BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012402
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YGH|A Chain A, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
pdb|1YGH|B Chain B, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
Length = 164
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/163 (59%), Positives = 123/163 (75%), Gaps = 1/163 (0%)
Query: 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNV-VVG 267
++F ++ND E+M+ L GLKNIF +QLP MPKEYI RLV DRSH S+ VIR + VVG
Sbjct: 2 IEFRVVNNDNTKENMMVLTGLKNIFQKQLPKMPKEYIARLVYDRSHLSMAVIRKPLTVVG 61
Query: 268 GITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVG 327
GITYRP+ ++F EI FCAI++ EQV+GYG LMNHLK + R+ + +FLTYADN A+G
Sbjct: 62 GITYRPFDKREFAEIVFCAISSTEQVRGYGAHLMNHLKDYVRNTSNIKYFLTYADNYAIG 121
Query: 328 YFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPYTD 370
YF KQGFTKEI L+K W GYIKDY+GG LM+C + P++ Y D
Sbjct: 122 YFKKQGFTKEITLDKSIWMGYIKDYEGGTLMQCSMLPRIRYLD 164
>pdb|5GCN|A Chain A, Catalytic Domain Of Tetrahymena Gcn5 Histone
Acetyltransferase In Complex With Coenzyme A
Length = 166
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/163 (57%), Positives = 120/163 (73%), Gaps = 2/163 (1%)
Query: 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRG-NVV 265
G L F L+NDG +M LI LKNIF+RQLP MPKEYIV+LV DR H+S+++++ V
Sbjct: 3 GLLDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKV 62
Query: 266 VGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNA 325
+GGI +R Y Q+F E+AF A+TA+EQV+GYGTRLMN K H + + + LTYADN A
Sbjct: 63 IGGICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQK-QNIEYLLTYADNFA 121
Query: 326 VGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPY 368
+GYF KQGFTKE + +++W+GYIKDYDGG LMEC I P + Y
Sbjct: 122 IGYFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 164
>pdb|1QST|A Chain A, Crystal Structure Of Tetrahymena Gcn5
Length = 160
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 119/161 (73%), Gaps = 2/161 (1%)
Query: 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRG-NVVVG 267
L F L+NDG +M LI LKNIF+RQLP MPKEYIV+LV DR H+S+++++ V+G
Sbjct: 1 LDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKVIG 60
Query: 268 GITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVG 327
GI +R Y Q+F E+AF A+TA+EQV+GYGTRLMN K H + + + LTYADN A+G
Sbjct: 61 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQK-QNIEYLLTYADNFAIG 119
Query: 328 YFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPY 368
YF KQGFTKE + +++W+GYIKDYDGG LMEC I P + Y
Sbjct: 120 YFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 160
>pdb|1QSN|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And Histone H3 Peptide
pdb|1QSR|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Acetyl-
Coenzyme A
pdb|1Q2C|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19- Residue Histone H4 Peptide
pdb|1Q2D|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue P53 Peptide
Length = 162
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 119/161 (73%), Gaps = 2/161 (1%)
Query: 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRG-NVVVG 267
L F L+NDG +M LI LKNIF+RQLP MPKEYIV+LV DR H+S+++++ V+G
Sbjct: 1 LDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKVIG 60
Query: 268 GITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVG 327
GI +R Y Q+F E+AF A+TA+EQV+GYGTRLMN K H + + + LTYADN A+G
Sbjct: 61 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQK-QNIEYLLTYADNFAIG 119
Query: 328 YFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPY 368
YF KQGFTKE + +++W+GYIKDYDGG LMEC I P + Y
Sbjct: 120 YFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 160
>pdb|1M1D|A Chain A, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|C Chain C, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1PU9|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue Histone H3 Peptide
pdb|1PUA|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A Phosphorylated, 19-Residue Histone H3 Peptide
Length = 163
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 119/161 (73%), Gaps = 2/161 (1%)
Query: 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRG-NVVVG 267
L F L+NDG +M LI LKNIF+RQLP MPKEYIV+LV DR H+S+++++ V+G
Sbjct: 2 LDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKLVFDRHHESMVILKNKQKVIG 61
Query: 268 GITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVG 327
GI +R Y Q+F E+AF A+TA+EQV+GYGTRLMN K H + + + LTYADN A+G
Sbjct: 62 GICFRQYKPQRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQK-QNIEYLLTYADNFAIG 120
Query: 328 YFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPY 368
YF KQGFTKE + +++W+GYIKDYDGG LMEC I P + Y
Sbjct: 121 YFKKQGFTKEHRMPQEKWKGYIKDYDGGTLMECYIHPYVDY 161
>pdb|1Z4R|A Chain A, Human Gcn5 Acetyltransferase
Length = 168
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 114/147 (77%), Gaps = 1/147 (0%)
Query: 223 MVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEI 282
++WL+GL+N+F+ QLP MPKEYI RLV D HK++ +I+ V+GGI +R + +Q F EI
Sbjct: 23 LLWLVGLQNVFSHQLPRMPKEYIARLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEI 82
Query: 283 AFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEK 342
FCA+T++EQVKGYGT LMNHLK++ + +FLTYAD A+GYF KQGF+K+I + K
Sbjct: 83 VFCAVTSNEQVKGYGTHLMNHLKEYHIK-HNILYFLTYADEYAIGYFKKQGFSKDIKVPK 141
Query: 343 DRWQGYIKDYDGGILMECKIDPKLPYT 369
R+ GYIKDY+G LMEC+++P++PYT
Sbjct: 142 SRYLGYIKDYEGATLMECELNPRIPYT 168
>pdb|1CM0|B Chain B, Crystal Structure Of The PcafCOENZYME-A Complex
pdb|1CM0|A Chain A, Crystal Structure Of The PcafCOENZYME-A Complex
Length = 168
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 83/148 (56%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Query: 223 MVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEI 282
++WL+GL+N+F+ QLP MPKEYI RLV D HK++ +I+ V+GGI +R + SQ F EI
Sbjct: 22 LMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPSQGFTEI 81
Query: 283 AFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEK 342
FCA+T++EQVKGYGT LMNHLK++ D + +FLTYAD A+GYF KQGF+KEI + K
Sbjct: 82 VFCAVTSNEQVKGYGTHLMNHLKEYHIKHD-ILNFLTYADEYAIGYFKKQGFSKEIKIPK 140
Query: 343 DRWQGYIKDYDGGILMECKIDPKLPYTD 370
++ GYIKDY+G LM C+++P++PYT+
Sbjct: 141 TKYVGYIKDYEGATLMGCELNPRIPYTE 168
>pdb|2R98|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase (Selenomet
Substituted) From Neisseria Gonorrhoeae
Length = 456
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 253 SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVD 312
S S++ GN+ G + + GEIA A++ Q GYG RL+ H+ AR +
Sbjct: 346 SEFSILEHDGNLY-GCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKARGI- 403
Query: 313 GLTHFLTYADNNAVGYFIKQGF 334
G++ + N +F ++GF
Sbjct: 404 GISRLFALSTNTGE-WFAERGF 424
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 253 SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVD 312
S S++ GN+ G + + GEIA A++ Q GYG RL+ H+ AR +
Sbjct: 346 SEFSILEHDGNLY-GCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKARGI- 403
Query: 313 GLTHFLTYADNNAVGYFIKQGF 334
G++ + N +F ++GF
Sbjct: 404 GISRLFALSTNTGE-WFAERGF 424
>pdb|1BTM|A Chain A, Triosephosphate Isomerase (Tim) Complexed With 2-
Phosphoglycolic Acid
pdb|1BTM|B Chain B, Triosephosphate Isomerase (Tim) Complexed With 2-
Phosphoglycolic Acid
Length = 252
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 421 LREAGWTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLL 460
L++ G T GHS R + A TD N+K L AF R L+
Sbjct: 82 LKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121
>pdb|2BTM|A Chain A, Does The His12-Lys13 Pair Play A Role In The Adaptation Of
Thermophilic Tims To High Temperatures?
pdb|2BTM|B Chain B, Does The His12-Lys13 Pair Play A Role In The Adaptation Of
Thermophilic Tims To High Temperatures?
Length = 252
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 421 LREAGWTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLL 460
L++ G T GHS R + A TD N+K L AF R L+
Sbjct: 82 LKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121
>pdb|3EK2|A Chain A, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|B Chain B, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|C Chain C, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|D Chain D, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
Length = 271
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 276 SQKFG-EIAF-CAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQG 333
+ +FG E+ F C + D Q+ L LK H +DGL H + +A A+ G
Sbjct: 60 AAEFGSELVFPCDVADDAQIDA----LFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDG 115
Query: 334 FTKE 337
T+E
Sbjct: 116 LTRE 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,283,374
Number of Sequences: 62578
Number of extensions: 416485
Number of successful extensions: 874
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 12
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)