Query 012404
Match_columns 464
No_of_seqs 367 out of 2503
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2.4E-27 5.2E-32 268.5 30.0 278 171-456 12-312 (2102)
2 KOG4224 Armadillo repeat prote 99.9 1.6E-26 3.5E-31 217.3 18.0 283 164-456 118-405 (550)
3 PLN03200 cellulose synthase-in 99.9 1.9E-25 4.2E-30 253.2 30.0 283 167-459 441-767 (2102)
4 KOG0166 Karyopherin (importin) 99.9 3.8E-25 8.3E-30 221.5 24.6 279 171-457 108-394 (514)
5 KOG4224 Armadillo repeat prote 99.9 2E-24 4.4E-29 203.2 19.7 285 162-457 157-447 (550)
6 KOG0166 Karyopherin (importin) 99.9 1.4E-23 3.1E-28 210.3 19.6 286 167-459 147-439 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 1E-22 2.3E-27 190.3 17.0 278 169-456 111-398 (526)
8 PF04564 U-box: U-box domain; 99.9 4.9E-23 1.1E-27 156.5 5.2 72 80-151 1-72 (73)
9 COG5064 SRP1 Karyopherin (impo 99.9 5E-21 1.1E-25 179.1 15.4 279 168-456 153-443 (526)
10 PF05804 KAP: Kinesin-associat 99.8 8.9E-19 1.9E-23 184.9 24.1 284 170-460 121-483 (708)
11 PF05804 KAP: Kinesin-associat 99.8 6.4E-18 1.4E-22 178.5 25.6 254 185-456 263-520 (708)
12 KOG4199 Uncharacterized conser 99.7 1.5E-15 3.2E-20 142.5 21.8 279 173-460 146-448 (461)
13 KOG2122 Beta-catenin-binding p 99.7 1.9E-16 4.1E-21 169.9 16.3 265 190-458 317-603 (2195)
14 KOG4199 Uncharacterized conser 99.7 4.4E-15 9.6E-20 139.3 22.8 262 185-457 121-404 (461)
15 COG5113 UFD2 Ubiquitin fusion 99.7 5.1E-17 1.1E-21 162.1 10.0 139 12-151 756-922 (929)
16 KOG1048 Neural adherens juncti 99.7 6.5E-16 1.4E-20 160.0 16.7 279 173-460 234-599 (717)
17 smart00504 Ubox Modified RING 99.7 4E-17 8.7E-22 121.0 5.1 63 83-146 1-63 (63)
18 KOG2042 Ubiquitin fusion degra 99.7 2.4E-16 5.2E-21 167.3 9.7 140 11-151 771-938 (943)
19 PF04826 Arm_2: Armadillo-like 99.6 3.7E-13 8.1E-18 127.0 20.4 225 213-447 11-253 (254)
20 KOG1048 Neural adherens juncti 99.5 4.7E-13 1E-17 139.0 19.2 284 169-462 272-690 (717)
21 PF04826 Arm_2: Armadillo-like 99.5 8.8E-13 1.9E-17 124.5 19.0 190 170-372 10-206 (254)
22 KOG2122 Beta-catenin-binding p 99.3 2.7E-11 5.8E-16 131.2 14.7 226 186-418 366-606 (2195)
23 PF10508 Proteasom_PSMB: Prote 99.3 1.2E-09 2.5E-14 114.3 25.8 272 177-460 43-323 (503)
24 KOG1222 Kinesin associated pro 99.3 1.3E-10 2.8E-15 114.2 15.8 217 236-459 279-496 (791)
25 PF10508 Proteasom_PSMB: Prote 99.2 3.8E-09 8.2E-14 110.5 26.3 274 172-456 77-366 (503)
26 cd00020 ARM Armadillo/beta-cat 99.2 1.6E-10 3.5E-15 96.4 12.5 115 298-413 2-120 (120)
27 cd00020 ARM Armadillo/beta-cat 99.2 6.2E-10 1.3E-14 92.9 14.1 115 339-455 2-119 (120)
28 KOG4642 Chaperone-dependent E3 99.1 1.7E-10 3.7E-15 104.3 7.3 78 76-153 204-281 (284)
29 PF03224 V-ATPase_H_N: V-ATPas 99.1 4.4E-09 9.5E-14 103.6 17.4 232 214-450 55-308 (312)
30 KOG1222 Kinesin associated pro 99.1 9.1E-09 2E-13 101.4 18.5 266 172-455 260-533 (791)
31 KOG4500 Rho/Rac GTPase guanine 99.1 2.9E-08 6.3E-13 96.8 21.6 285 171-459 86-434 (604)
32 PLN03208 E3 ubiquitin-protein 99.0 2.8E-10 6.1E-15 100.6 3.2 62 76-137 11-87 (193)
33 PF15227 zf-C3HC4_4: zinc fing 98.9 4.8E-10 1.1E-14 75.0 2.7 39 86-124 1-42 (42)
34 PRK09687 putative lyase; Provi 98.9 1.5E-07 3.2E-12 90.9 19.4 117 304-453 160-279 (280)
35 TIGR00599 rad18 DNA repair pro 98.9 2.3E-09 4.9E-14 106.3 6.6 70 79-149 22-91 (397)
36 KOG4500 Rho/Rac GTPase guanine 98.9 1.9E-07 4.1E-12 91.2 19.3 278 175-454 226-517 (604)
37 KOG0946 ER-Golgi vesicle-tethe 98.8 1.7E-06 3.7E-11 90.2 24.1 275 171-454 21-344 (970)
38 cd00256 VATPase_H VATPase_H, r 98.7 4.3E-06 9.4E-11 84.4 23.2 272 175-454 104-423 (429)
39 PF11789 zf-Nse: Zinc-finger o 98.7 4.5E-09 9.8E-14 75.0 0.9 43 83-125 11-55 (57)
40 KOG2160 Armadillo/beta-catenin 98.7 1.4E-06 3.1E-11 84.0 18.0 177 275-452 96-278 (342)
41 PRK09687 putative lyase; Provi 98.7 8.9E-07 1.9E-11 85.5 16.2 89 345-456 160-250 (280)
42 PF03224 V-ATPase_H_N: V-ATPas 98.7 4E-07 8.6E-12 89.7 13.9 211 176-393 62-293 (312)
43 KOG2160 Armadillo/beta-catenin 98.6 1.8E-06 3.9E-11 83.3 16.1 183 231-415 94-284 (342)
44 PF13923 zf-C3HC4_2: Zinc fing 98.6 4E-08 8.7E-13 64.8 2.7 38 86-124 1-39 (39)
45 PF13445 zf-RING_UBOX: RING-ty 98.5 5.3E-08 1.2E-12 65.1 2.2 31 86-117 1-35 (43)
46 PRK13800 putative oxidoreducta 98.5 1.3E-05 2.8E-10 89.9 22.5 223 171-454 620-865 (897)
47 cd00256 VATPase_H VATPase_H, r 98.5 4.4E-05 9.6E-10 77.2 23.3 236 214-454 53-306 (429)
48 KOG0168 Putative ubiquitin fus 98.5 7.4E-06 1.6E-10 86.2 17.7 198 233-436 181-389 (1051)
49 KOG0168 Putative ubiquitin fus 98.4 2.6E-05 5.6E-10 82.2 20.6 256 172-439 167-438 (1051)
50 PRK13800 putative oxidoreducta 98.4 4E-05 8.8E-10 86.0 23.3 225 171-452 651-895 (897)
51 KOG0287 Postreplication repair 98.4 1.6E-07 3.5E-12 88.4 3.1 65 83-148 23-87 (442)
52 PF13920 zf-C3HC4_3: Zinc fing 98.4 2.4E-07 5.3E-12 64.7 2.7 47 82-129 1-48 (50)
53 KOG0946 ER-Golgi vesicle-tethe 98.3 2.3E-05 5E-10 82.0 17.6 212 215-436 23-263 (970)
54 PHA02929 N1R/p28-like protein; 98.3 4.4E-07 9.6E-12 84.1 4.2 52 77-129 168-227 (238)
55 KOG0289 mRNA splicing factor [ 98.3 1.3E-06 2.9E-11 85.1 6.5 51 84-135 1-52 (506)
56 KOG0823 Predicted E3 ubiquitin 98.3 4.5E-07 9.7E-12 81.9 2.5 56 82-137 46-103 (230)
57 PF00097 zf-C3HC4: Zinc finger 98.2 8.2E-07 1.8E-11 59.2 2.9 39 86-124 1-41 (41)
58 KOG0317 Predicted E3 ubiquitin 98.2 9.6E-07 2.1E-11 82.1 3.6 54 80-134 236-289 (293)
59 PF05536 Neurochondrin: Neuroc 98.2 8.4E-05 1.8E-09 78.3 17.9 189 263-454 6-211 (543)
60 PF14835 zf-RING_6: zf-RING of 98.1 6.1E-07 1.3E-11 64.2 0.6 58 83-143 7-65 (65)
61 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00022 4.8E-09 70.2 18.4 221 232-454 169-436 (442)
62 COG5432 RAD18 RING-finger-cont 98.1 1.5E-06 3.2E-11 80.3 2.9 65 83-148 25-89 (391)
63 KOG1293 Proteins containing ar 98.1 0.00042 9.2E-09 71.6 20.5 146 272-418 387-538 (678)
64 COG5222 Uncharacterized conser 98.1 4.4E-06 9.6E-11 77.4 5.5 113 35-150 228-343 (427)
65 KOG4646 Uncharacterized conser 98.1 9.3E-06 2E-10 67.5 6.8 131 215-351 17-148 (173)
66 PF05536 Neurochondrin: Neuroc 98.1 0.00021 4.5E-09 75.4 18.6 240 215-462 6-267 (543)
67 KOG4646 Uncharacterized conser 98.1 3.8E-05 8.1E-10 63.9 9.8 152 299-452 12-166 (173)
68 KOG1293 Proteins containing ar 98.1 7.3E-05 1.6E-09 77.1 14.1 141 315-456 389-533 (678)
69 PF01602 Adaptin_N: Adaptin N 98.1 0.00018 3.9E-09 76.1 17.9 277 134-456 53-333 (526)
70 PF13639 zf-RING_2: Ring finge 98.1 2.1E-06 4.5E-11 58.2 1.9 40 85-125 2-44 (44)
71 KOG2177 Predicted E3 ubiquitin 98.0 3.9E-06 8.6E-11 82.5 4.4 68 80-150 10-77 (386)
72 KOG2171 Karyopherin (importin) 98.0 0.00083 1.8E-08 73.7 22.1 256 189-459 224-507 (1075)
73 PF01602 Adaptin_N: Adaptin N 98.0 0.00033 7.1E-09 74.1 19.2 251 173-458 43-298 (526)
74 KOG2171 Karyopherin (importin) 98.0 0.0012 2.5E-08 72.5 22.2 264 185-455 263-548 (1075)
75 cd00162 RING RING-finger (Real 98.0 8.4E-06 1.8E-10 55.0 3.6 43 85-127 1-44 (45)
76 KOG2973 Uncharacterized conser 97.9 0.0019 4.2E-08 61.3 19.7 268 174-456 5-315 (353)
77 KOG2973 Uncharacterized conser 97.9 0.00019 4.2E-09 67.9 13.0 184 265-455 6-203 (353)
78 PHA02926 zinc finger-like prot 97.9 6.6E-06 1.4E-10 73.8 3.1 55 75-129 162-230 (242)
79 PF00514 Arm: Armadillo/beta-c 97.9 3.4E-05 7.4E-10 51.3 5.0 41 372-413 1-41 (41)
80 PF00514 Arm: Armadillo/beta-c 97.8 1.4E-05 3E-10 53.2 2.5 40 293-332 2-41 (41)
81 smart00184 RING Ring finger. E 97.8 1.9E-05 4.1E-10 51.3 3.1 39 86-124 1-39 (39)
82 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0032 6.9E-08 63.3 20.2 265 180-455 34-363 (371)
83 KOG3678 SARM protein (with ste 97.7 0.0015 3.3E-08 65.1 16.3 239 206-456 173-452 (832)
84 PTZ00429 beta-adaptin; Provisi 97.7 0.0078 1.7E-07 65.6 22.9 251 174-454 70-324 (746)
85 TIGR00570 cdk7 CDK-activating 97.7 6.2E-05 1.3E-09 72.0 5.7 51 82-132 2-57 (309)
86 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0058 1.3E-07 61.4 19.9 258 195-463 7-276 (371)
87 TIGR02270 conserved hypothetic 97.6 0.0081 1.8E-07 61.1 20.8 57 385-458 242-298 (410)
88 KOG0320 Predicted E3 ubiquitin 97.6 2.8E-05 6E-10 67.3 2.5 51 83-134 131-183 (187)
89 PTZ00429 beta-adaptin; Provisi 97.6 0.014 3.1E-07 63.6 22.4 251 171-455 31-284 (746)
90 KOG1789 Endocytosis protein RM 97.5 0.016 3.6E-07 63.1 21.6 241 185-438 1786-2141(2235)
91 PF13646 HEAT_2: HEAT repeats; 97.5 0.00049 1.1E-08 53.9 7.9 84 264-367 1-88 (88)
92 KOG3678 SARM protein (with ste 97.5 0.0029 6.3E-08 63.1 14.4 235 170-415 178-454 (832)
93 KOG0311 Predicted E3 ubiquitin 97.5 3.1E-05 6.8E-10 74.0 0.8 67 80-146 40-108 (381)
94 KOG2734 Uncharacterized conser 97.5 0.051 1.1E-06 54.2 22.4 244 170-415 123-402 (536)
95 COG5574 PEX10 RING-finger-cont 97.4 8.9E-05 1.9E-09 68.4 2.2 51 82-132 214-265 (271)
96 PF12678 zf-rbx1: RING-H2 zinc 97.3 0.00015 3.2E-09 54.9 2.8 47 77-125 14-73 (73)
97 PF14634 zf-RING_5: zinc-RING 97.3 0.00018 3.8E-09 48.7 2.7 40 86-126 2-44 (44)
98 KOG2759 Vacuolar H+-ATPase V1 97.3 0.03 6.4E-07 55.6 18.8 230 215-450 66-315 (442)
99 KOG1789 Endocytosis protein RM 97.3 0.0061 1.3E-07 66.2 14.6 137 278-414 1741-1884(2235)
100 KOG2734 Uncharacterized conser 97.3 0.11 2.4E-06 51.9 22.3 234 189-434 102-368 (536)
101 KOG2023 Nuclear transport rece 97.2 0.0075 1.6E-07 62.7 14.4 267 172-457 128-464 (885)
102 PF13646 HEAT_2: HEAT repeats; 97.2 0.0013 2.8E-08 51.4 7.1 85 305-409 1-88 (88)
103 COG5369 Uncharacterized conser 97.2 0.0032 6.8E-08 63.9 11.1 195 240-436 409-617 (743)
104 PF10165 Ric8: Guanine nucleot 97.2 0.026 5.7E-07 58.3 18.1 265 192-459 2-340 (446)
105 smart00185 ARM Armadillo/beta- 97.1 0.00054 1.2E-08 45.1 3.6 39 294-332 3-41 (41)
106 KOG4159 Predicted E3 ubiquitin 97.1 0.00043 9.3E-09 69.2 4.4 73 76-149 77-154 (398)
107 KOG0978 E3 ubiquitin ligase in 97.1 0.00024 5.3E-09 74.9 2.0 53 83-135 643-695 (698)
108 PF12348 CLASP_N: CLASP N term 97.1 0.017 3.6E-07 54.0 14.2 182 272-458 17-208 (228)
109 KOG0212 Uncharacterized conser 97.1 0.036 7.8E-07 56.8 16.9 258 185-457 181-445 (675)
110 KOG2660 Locus-specific chromos 97.0 0.00038 8.2E-09 66.4 2.8 65 79-144 11-80 (331)
111 PF11841 DUF3361: Domain of un 97.0 0.026 5.6E-07 49.1 13.3 121 296-417 4-135 (160)
112 PF10165 Ric8: Guanine nucleot 97.0 0.066 1.4E-06 55.4 18.6 237 185-427 46-348 (446)
113 KOG0297 TNF receptor-associate 96.9 0.0006 1.3E-08 69.0 3.4 66 80-146 18-85 (391)
114 KOG2164 Predicted E3 ubiquitin 96.9 0.00069 1.5E-08 68.3 3.4 72 80-151 183-262 (513)
115 KOG0212 Uncharacterized conser 96.9 0.058 1.3E-06 55.4 16.7 239 213-462 166-412 (675)
116 smart00185 ARM Armadillo/beta- 96.9 0.0025 5.4E-08 41.8 4.9 40 373-413 2-41 (41)
117 KOG4413 26S proteasome regulat 96.8 0.14 3E-06 49.3 17.9 258 189-456 100-377 (524)
118 KOG1242 Protein containing ada 96.8 0.042 9.1E-07 57.0 15.1 222 213-452 212-440 (569)
119 TIGR02270 conserved hypothetic 96.7 0.13 2.8E-06 52.4 18.1 198 173-414 87-297 (410)
120 COG1413 FOG: HEAT repeat [Ener 96.6 0.12 2.6E-06 51.3 17.0 160 215-415 44-211 (335)
121 PF12348 CLASP_N: CLASP N term 96.6 0.011 2.5E-07 55.2 8.9 188 231-423 18-216 (228)
122 COG5243 HRD1 HRD ubiquitin lig 96.5 0.0052 1.1E-07 59.3 6.3 48 80-128 284-344 (491)
123 PF13513 HEAT_EZ: HEAT-like re 96.5 0.003 6.5E-08 44.7 3.5 55 276-330 1-55 (55)
124 KOG0802 E3 ubiquitin ligase [P 96.4 0.0015 3.3E-08 69.2 1.9 48 80-128 288-340 (543)
125 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.0027 5.9E-08 60.7 3.3 53 80-134 110-166 (260)
126 PF04063 DUF383: Domain of unk 96.3 0.05 1.1E-06 49.3 10.8 105 317-423 9-141 (192)
127 PF09759 Atx10homo_assoc: Spin 96.2 0.032 6.9E-07 44.9 8.2 66 358-424 2-69 (102)
128 KOG4692 Predicted E3 ubiquitin 96.2 0.0065 1.4E-07 58.2 4.9 48 81-129 420-467 (489)
129 KOG0824 Predicted E3 ubiquitin 96.1 0.0027 5.8E-08 59.8 1.9 47 85-131 9-55 (324)
130 PF13513 HEAT_EZ: HEAT-like re 96.1 0.013 2.8E-07 41.4 5.1 55 398-454 1-55 (55)
131 KOG4413 26S proteasome regulat 96.1 0.57 1.2E-05 45.3 17.2 225 231-457 93-334 (524)
132 KOG3039 Uncharacterized conser 96.1 0.0048 1E-07 56.3 3.0 53 82-135 220-276 (303)
133 COG1413 FOG: HEAT repeat [Ener 96.0 0.86 1.9E-05 45.1 19.6 187 172-411 43-240 (335)
134 COG5240 SEC21 Vesicle coat com 96.0 2.3 5E-05 44.3 21.9 248 185-456 278-555 (898)
135 KOG1248 Uncharacterized conser 95.9 0.32 7E-06 54.2 16.7 216 231-456 665-898 (1176)
136 KOG2999 Regulator of Rac1, req 95.9 0.22 4.7E-06 51.2 14.1 153 264-417 85-246 (713)
137 PF12861 zf-Apc11: Anaphase-pr 95.9 0.0088 1.9E-07 46.0 3.3 46 84-129 33-82 (85)
138 KOG2979 Protein involved in DN 95.9 0.009 1.9E-07 55.2 3.9 63 83-145 176-244 (262)
139 KOG3036 Protein involved in ce 95.8 1.6 3.5E-05 40.6 18.1 238 173-413 27-291 (293)
140 PF11841 DUF3361: Domain of un 95.8 0.16 3.4E-06 44.3 11.1 116 338-454 5-129 (160)
141 KOG1241 Karyopherin (importin) 95.8 0.13 2.9E-06 54.6 12.4 207 214-424 319-541 (859)
142 KOG4628 Predicted E3 ubiquitin 95.8 0.0058 1.2E-07 59.7 2.4 46 84-129 230-278 (348)
143 KOG2023 Nuclear transport rece 95.7 0.076 1.6E-06 55.6 10.1 170 213-390 127-306 (885)
144 KOG3039 Uncharacterized conser 95.6 0.0067 1.5E-07 55.3 2.2 37 80-116 40-76 (303)
145 PF14668 RICTOR_V: Rapamycin-i 95.6 0.07 1.5E-06 40.1 7.2 64 320-383 4-70 (73)
146 KOG2259 Uncharacterized conser 95.6 0.07 1.5E-06 55.8 9.4 103 340-454 369-473 (823)
147 KOG1241 Karyopherin (importin) 95.6 0.7 1.5E-05 49.4 16.7 255 186-458 145-437 (859)
148 COG5369 Uncharacterized conser 95.4 0.077 1.7E-06 54.3 8.9 136 321-459 407-548 (743)
149 COG5231 VMA13 Vacuolar H+-ATPa 95.3 0.75 1.6E-05 44.4 14.6 221 234-455 163-427 (432)
150 COG5215 KAP95 Karyopherin (imp 95.3 1.5 3.2E-05 45.6 17.5 255 185-457 148-438 (858)
151 KOG1813 Predicted E3 ubiquitin 95.3 0.0092 2E-07 56.2 1.8 45 84-129 242-286 (313)
152 KOG2611 Neurochondrin/leucine- 95.2 0.86 1.9E-05 46.3 15.4 181 267-452 16-221 (698)
153 PF05004 IFRD: Interferon-rela 95.1 2.7 5.8E-05 41.3 18.6 186 267-457 48-258 (309)
154 KOG3036 Protein involved in ce 95.0 0.49 1.1E-05 44.0 12.1 150 190-342 98-257 (293)
155 KOG2817 Predicted E3 ubiquitin 95.0 0.016 3.4E-07 57.0 2.7 44 84-127 335-383 (394)
156 KOG1242 Protein containing ada 95.0 0.98 2.1E-05 47.2 15.6 222 215-458 97-326 (569)
157 COG5096 Vesicle coat complex, 95.0 0.32 6.9E-06 52.7 12.5 94 231-333 103-196 (757)
158 KOG1517 Guanine nucleotide bin 94.9 1.1 2.5E-05 49.6 16.2 158 171-333 511-672 (1387)
159 KOG0826 Predicted E3 ubiquitin 94.9 0.013 2.9E-07 55.8 1.7 52 80-132 297-349 (357)
160 PF04078 Rcd1: Cell differenti 94.8 0.72 1.6E-05 43.5 12.9 139 316-454 8-166 (262)
161 KOG4367 Predicted Zn-finger pr 94.7 0.011 2.4E-07 58.2 0.7 35 82-116 3-37 (699)
162 PF04063 DUF383: Domain of unk 94.6 0.24 5.1E-06 45.0 9.0 100 213-312 51-156 (192)
163 KOG1824 TATA-binding protein-i 94.6 3.4 7.3E-05 45.6 18.7 171 176-360 572-750 (1233)
164 KOG1059 Vesicle coat complex A 94.6 6.8 0.00015 42.0 20.4 121 304-436 300-422 (877)
165 KOG1002 Nucleotide excision re 94.4 0.023 5E-07 57.4 2.2 54 82-135 535-592 (791)
166 KOG3113 Uncharacterized conser 94.3 0.028 6E-07 51.6 2.4 51 81-134 109-163 (293)
167 KOG1061 Vesicle coat complex A 94.3 0.85 1.8E-05 48.9 13.5 240 173-440 50-293 (734)
168 COG5231 VMA13 Vacuolar H+-ATPa 94.1 1.9 4E-05 41.8 14.1 219 187-412 165-427 (432)
169 COG5181 HSH155 U2 snRNP splice 94.0 1.3 2.7E-05 46.5 13.6 151 174-331 606-758 (975)
170 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.46 1E-05 38.0 8.6 93 359-455 3-96 (97)
171 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.21 4.5E-06 40.0 6.6 68 302-371 26-96 (97)
172 COG5152 Uncharacterized conser 94.0 0.025 5.5E-07 49.9 1.3 45 84-129 197-241 (259)
173 PF04078 Rcd1: Cell differenti 93.8 1 2.2E-05 42.5 11.7 150 190-342 69-228 (262)
174 PF07814 WAPL: Wings apart-lik 93.7 1.1 2.5E-05 45.0 12.9 236 171-423 20-309 (361)
175 PF08045 CDC14: Cell division 93.7 0.61 1.3E-05 44.1 10.1 95 359-454 108-205 (257)
176 KOG4151 Myosin assembly protei 93.7 0.98 2.1E-05 48.6 12.7 194 254-454 497-697 (748)
177 PF09759 Atx10homo_assoc: Spin 93.6 0.21 4.7E-06 40.1 5.9 66 188-258 3-69 (102)
178 KOG1788 Uncharacterized conser 93.5 4.1 8.9E-05 45.4 16.8 250 193-457 664-983 (2799)
179 KOG2999 Regulator of Rac1, req 93.5 1.2 2.6E-05 46.1 12.2 152 303-455 83-241 (713)
180 KOG1517 Guanine nucleotide bin 93.5 3.2 6.9E-05 46.2 16.0 215 239-454 486-730 (1387)
181 KOG1062 Vesicle coat complex A 93.4 5.3 0.00012 43.3 17.3 249 183-457 306-582 (866)
182 PF14668 RICTOR_V: Rapamycin-i 93.3 0.48 1E-05 35.6 7.1 68 359-428 4-71 (73)
183 KOG1077 Vesicle coat complex A 93.3 6.9 0.00015 41.9 17.6 221 185-424 162-407 (938)
184 KOG0213 Splicing factor 3b, su 93.3 1.9 4.1E-05 46.2 13.6 139 184-331 812-953 (1172)
185 KOG1062 Vesicle coat complex A 93.2 1.8 3.9E-05 46.7 13.6 69 214-291 103-171 (866)
186 KOG2274 Predicted importin 9 [ 93.2 5 0.00011 44.0 16.8 181 234-419 505-695 (1005)
187 COG5540 RING-finger-containing 93.2 0.069 1.5E-06 50.5 2.8 47 84-130 324-373 (374)
188 COG5109 Uncharacterized conser 93.1 0.21 4.6E-06 47.5 5.9 43 84-126 337-384 (396)
189 KOG0883 Cyclophilin type, U bo 92.9 0.068 1.5E-06 52.2 2.5 52 83-135 40-91 (518)
190 KOG1078 Vesicle coat complex C 92.9 7.5 0.00016 42.1 17.5 245 185-456 259-532 (865)
191 KOG2611 Neurochondrin/leucine- 92.8 11 0.00023 38.8 17.5 177 234-414 25-226 (698)
192 PF08569 Mo25: Mo25-like; Int 92.7 11 0.00023 37.5 17.6 194 262-458 76-285 (335)
193 PF13764 E3_UbLigase_R4: E3 ub 92.6 16 0.00035 40.5 20.3 240 169-413 114-406 (802)
194 KOG0804 Cytoplasmic Zn-finger 92.6 0.045 9.7E-07 54.5 0.8 43 84-129 176-222 (493)
195 PF13764 E3_UbLigase_R4: E3 ub 92.4 21 0.00046 39.6 21.0 244 208-458 112-408 (802)
196 KOG2274 Predicted importin 9 [ 92.1 5.1 0.00011 44.0 15.2 217 232-456 462-689 (1005)
197 PF05004 IFRD: Interferon-rela 92.1 4.9 0.00011 39.4 14.4 178 234-414 57-258 (309)
198 KOG1077 Vesicle coat complex A 92.0 20 0.00044 38.5 19.5 220 215-455 330-586 (938)
199 PF02985 HEAT: HEAT repeat; I 91.9 0.26 5.6E-06 30.2 3.4 28 264-291 2-29 (31)
200 PF11698 V-ATPase_H_C: V-ATPas 91.9 0.33 7.1E-06 40.2 4.9 69 263-331 44-114 (119)
201 KOG1061 Vesicle coat complex A 91.9 2.3 4.9E-05 45.8 12.3 70 173-252 122-192 (734)
202 KOG1824 TATA-binding protein-i 91.9 13 0.00029 41.2 18.0 184 262-457 966-1187(1233)
203 KOG2879 Predicted E3 ubiquitin 91.8 0.13 2.7E-06 48.2 2.7 50 80-129 236-287 (298)
204 KOG1967 DNA repair/transcripti 91.7 1.1 2.4E-05 49.0 9.9 152 206-365 861-1018(1030)
205 KOG0213 Splicing factor 3b, su 91.6 1.7 3.8E-05 46.5 10.9 151 303-457 799-955 (1172)
206 COG5096 Vesicle coat complex, 91.5 9.4 0.0002 41.8 16.6 165 271-456 28-195 (757)
207 PF02891 zf-MIZ: MIZ/SP-RING z 91.1 0.18 4E-06 34.9 2.3 44 84-127 3-50 (50)
208 PF12031 DUF3518: Domain of un 91.1 0.69 1.5E-05 43.0 6.6 86 357-442 139-231 (257)
209 PF08045 CDC14: Cell division 91.0 1.3 2.7E-05 42.0 8.6 94 278-371 107-207 (257)
210 PF02985 HEAT: HEAT repeat; I 91.0 0.28 6.1E-06 30.0 2.9 29 304-332 1-29 (31)
211 PF08324 PUL: PUL domain; Int 91.0 3.9 8.5E-05 39.1 12.4 174 232-405 75-266 (268)
212 PF11701 UNC45-central: Myosin 90.8 1.4 3.1E-05 38.5 8.3 142 264-409 5-155 (157)
213 PF12719 Cnd3: Nuclear condens 90.6 5.4 0.00012 38.9 13.0 156 231-394 38-208 (298)
214 PF12031 DUF3518: Domain of un 90.3 0.83 1.8E-05 42.4 6.5 80 276-355 138-227 (257)
215 PF11698 V-ATPase_H_C: V-ATPas 90.3 1 2.2E-05 37.3 6.4 70 384-454 44-113 (119)
216 KOG1059 Vesicle coat complex A 90.3 30 0.00064 37.4 20.6 215 171-414 143-366 (877)
217 PF12717 Cnd1: non-SMC mitotic 90.3 1.6 3.6E-05 39.0 8.4 93 233-333 1-93 (178)
218 PF14447 Prok-RING_4: Prokaryo 89.9 0.15 3.2E-06 35.7 1.0 47 83-132 7-53 (55)
219 KOG1943 Beta-tubulin folding c 89.8 33 0.00072 38.7 18.9 237 172-441 341-596 (1133)
220 PF14570 zf-RING_4: RING/Ubox 89.6 0.3 6.5E-06 33.3 2.3 43 86-128 1-47 (48)
221 PF06416 DUF1076: Protein of u 89.6 0.2 4.3E-06 40.2 1.6 58 76-134 32-96 (113)
222 COG5181 HSH155 U2 snRNP splice 89.5 2 4.4E-05 45.0 9.1 144 264-413 606-759 (975)
223 KOG1039 Predicted E3 ubiquitin 89.4 0.24 5.2E-06 48.9 2.4 49 81-129 159-221 (344)
224 PF06371 Drf_GBD: Diaphanous G 89.3 2.9 6.2E-05 37.5 9.3 117 172-290 66-186 (187)
225 KOG1785 Tyrosine kinase negati 89.3 0.18 3.8E-06 49.5 1.3 47 85-131 371-418 (563)
226 KOG1734 Predicted RING-contain 89.0 0.097 2.1E-06 48.7 -0.6 51 83-133 224-285 (328)
227 COG5215 KAP95 Karyopherin (imp 88.6 8.4 0.00018 40.3 12.6 208 231-452 16-246 (858)
228 PF12460 MMS19_C: RNAPII trans 88.2 4.2 9.2E-05 41.7 10.7 138 185-334 244-396 (415)
229 PF10408 Ufd2P_core: Ubiquitin 87.8 0.38 8.2E-06 52.2 2.9 30 32-61 580-610 (629)
230 PF06025 DUF913: Domain of Unk 87.8 12 0.00026 37.9 13.4 125 257-381 101-243 (379)
231 KOG4535 HEAT and armadillo rep 87.8 0.76 1.6E-05 46.7 4.6 177 237-414 408-604 (728)
232 PF06371 Drf_GBD: Diaphanous G 87.7 2.1 4.5E-05 38.4 7.3 75 337-412 100-186 (187)
233 PF11701 UNC45-central: Myosin 87.7 3.4 7.4E-05 36.2 8.3 144 215-367 4-155 (157)
234 PF08167 RIX1: rRNA processing 87.5 2.6 5.6E-05 37.3 7.6 108 263-371 26-143 (165)
235 COG5627 MMS21 DNA repair prote 87.4 0.64 1.4E-05 42.5 3.6 57 83-139 189-249 (275)
236 PF08569 Mo25: Mo25-like; Int 87.3 12 0.00027 37.1 12.9 212 172-394 76-308 (335)
237 KOG1943 Beta-tubulin folding c 87.3 22 0.00049 40.0 15.7 197 254-458 335-575 (1133)
238 PF05918 API5: Apoptosis inhib 87.2 4.7 0.0001 42.5 10.3 103 173-293 24-127 (556)
239 KOG4172 Predicted E3 ubiquitin 87.2 0.22 4.7E-06 34.5 0.4 44 85-128 9-53 (62)
240 PF08324 PUL: PUL domain; Int 87.1 4.5 9.9E-05 38.6 9.7 161 186-349 78-249 (268)
241 KOG1240 Protein kinase contain 86.8 40 0.00086 38.7 17.3 250 185-457 437-726 (1431)
242 KOG0414 Chromosome condensatio 86.7 29 0.00062 39.6 16.2 127 215-356 920-1047(1251)
243 KOG1645 RING-finger-containing 86.3 0.46 1E-05 47.0 2.2 61 83-143 4-70 (463)
244 COG5175 MOT2 Transcriptional r 86.3 0.49 1.1E-05 45.5 2.3 46 86-131 17-66 (480)
245 PF12719 Cnd3: Nuclear condens 86.2 34 0.00074 33.2 15.7 158 183-355 39-208 (298)
246 PF12460 MMS19_C: RNAPII trans 86.1 31 0.00067 35.3 15.7 186 263-457 190-395 (415)
247 COG5240 SEC21 Vesicle coat com 86.0 31 0.00068 36.3 15.0 59 234-295 278-336 (898)
248 COG5209 RCD1 Uncharacterized p 85.9 2.1 4.6E-05 39.3 6.1 97 358-454 116-216 (315)
249 KOG1248 Uncharacterized conser 85.9 30 0.00064 39.5 15.8 217 184-416 667-901 (1176)
250 KOG0396 Uncharacterized conser 85.8 0.36 7.8E-06 47.2 1.2 48 84-131 331-381 (389)
251 KOG2032 Uncharacterized conser 85.6 43 0.00094 34.6 15.6 240 213-456 253-531 (533)
252 COG5209 RCD1 Uncharacterized p 85.3 4.9 0.00011 37.0 8.1 147 190-339 119-275 (315)
253 KOG4151 Myosin assembly protei 84.4 3.6 7.7E-05 44.5 7.9 156 188-350 559-718 (748)
254 KOG2259 Uncharacterized conser 83.8 0.67 1.5E-05 48.8 2.2 102 170-289 371-473 (823)
255 KOG1060 Vesicle coat complex A 83.7 65 0.0014 35.4 16.5 205 175-413 38-246 (968)
256 KOG3800 Predicted E3 ubiquitin 83.7 0.86 1.9E-05 43.2 2.6 47 85-131 2-53 (300)
257 COG5194 APC11 Component of SCF 83.4 0.98 2.1E-05 34.0 2.3 44 85-129 33-81 (88)
258 PF11793 FANCL_C: FANCL C-term 83.2 0.27 5.9E-06 36.7 -0.7 47 83-129 2-66 (70)
259 KOG4265 Predicted E3 ubiquitin 83.0 0.69 1.5E-05 45.2 1.8 46 84-130 291-337 (349)
260 KOG1967 DNA repair/transcripti 82.9 8 0.00017 42.6 9.7 149 254-407 861-1018(1030)
261 KOG1240 Protein kinase contain 82.9 52 0.0011 37.8 16.0 92 216-315 424-519 (1431)
262 PF04641 Rtf2: Rtf2 RING-finge 82.8 1.3 2.7E-05 42.4 3.5 36 82-117 33-69 (260)
263 PF12717 Cnd1: non-SMC mitotic 82.4 6 0.00013 35.3 7.6 92 185-292 2-93 (178)
264 KOG4535 HEAT and armadillo rep 82.3 0.94 2E-05 46.0 2.4 174 279-453 408-600 (728)
265 cd03568 VHS_STAM VHS domain fa 82.1 8.6 0.00019 33.1 8.1 72 384-456 38-110 (144)
266 KOG4653 Uncharacterized conser 81.2 37 0.0008 37.5 13.8 178 235-423 742-928 (982)
267 KOG0301 Phospholipase A2-activ 81.0 39 0.00084 36.2 13.6 160 185-355 558-727 (745)
268 KOG0828 Predicted E3 ubiquitin 80.5 1 2.2E-05 45.7 1.9 51 80-130 568-635 (636)
269 PF05918 API5: Apoptosis inhib 80.1 12 0.00027 39.5 9.8 120 137-288 36-159 (556)
270 KOG1060 Vesicle coat complex A 80.0 48 0.001 36.3 14.0 166 266-454 39-207 (968)
271 smart00744 RINGv The RING-vari 79.7 2.2 4.7E-05 29.4 2.8 40 86-125 2-49 (49)
272 PF06025 DUF913: Domain of Unk 79.4 75 0.0016 32.2 15.4 136 302-439 105-256 (379)
273 KOG1001 Helicase-like transcri 79.4 0.5 1.1E-05 51.2 -0.6 47 84-131 455-502 (674)
274 KOG1493 Anaphase-promoting com 79.3 0.74 1.6E-05 34.3 0.4 34 96-129 45-81 (84)
275 PF11865 DUF3385: Domain of un 79.1 21 0.00045 31.3 9.7 144 303-453 10-154 (160)
276 cd03569 VHS_Hrs_Vps27p VHS dom 78.6 13 0.00028 31.9 8.1 72 384-456 42-114 (142)
277 KOG2025 Chromosome condensatio 78.6 73 0.0016 34.6 14.7 114 171-300 84-199 (892)
278 PF11707 Npa1: Ribosome 60S bi 78.3 74 0.0016 31.5 17.3 153 216-374 58-240 (330)
279 KOG0825 PHD Zn-finger protein 77.5 0.89 1.9E-05 48.6 0.6 47 83-130 123-172 (1134)
280 cd03561 VHS VHS domain family; 77.1 16 0.00036 30.8 8.2 73 384-457 38-113 (133)
281 KOG0567 HEAT repeat-containing 77.0 69 0.0015 30.5 15.2 199 213-458 66-282 (289)
282 KOG0301 Phospholipase A2-activ 75.8 46 0.00099 35.7 12.3 156 233-395 557-728 (745)
283 KOG0567 HEAT repeat-containing 75.4 40 0.00088 32.0 10.7 121 172-331 154-279 (289)
284 KOG1991 Nuclear transport rece 75.3 1E+02 0.0022 34.7 15.2 238 213-455 409-670 (1010)
285 COG5219 Uncharacterized conser 75.2 1.9 4.2E-05 47.2 2.3 49 80-129 1466-1523(1525)
286 KOG1058 Vesicle coat complex C 75.2 1.2E+02 0.0027 33.2 15.3 31 304-334 318-348 (948)
287 smart00638 LPD_N Lipoprotein N 74.9 71 0.0015 34.2 14.4 181 214-418 311-514 (574)
288 KOG2062 26S proteasome regulat 74.9 55 0.0012 35.7 12.6 154 263-439 520-677 (929)
289 KOG1820 Microtubule-associated 74.8 68 0.0015 35.8 14.0 182 264-454 255-441 (815)
290 PF08167 RIX1: rRNA processing 74.8 9 0.00019 33.8 6.2 110 215-333 26-144 (165)
291 KOG4653 Uncharacterized conser 74.1 35 0.00075 37.7 11.2 174 272-456 737-918 (982)
292 cd03567 VHS_GGA VHS domain fam 73.7 21 0.00046 30.5 8.0 72 384-456 39-116 (139)
293 KOG4185 Predicted E3 ubiquitin 72.5 4.1 8.9E-05 39.7 3.8 62 85-146 5-77 (296)
294 KOG1991 Nuclear transport rece 71.3 1.9E+02 0.004 32.8 16.0 132 262-396 410-560 (1010)
295 PF04564 U-box: U-box domain; 71.1 2.6 5.7E-05 31.6 1.6 34 82-117 38-71 (73)
296 KOG2956 CLIP-associating prote 70.1 1.3E+02 0.0028 31.2 13.5 178 174-370 288-476 (516)
297 PF00790 VHS: VHS domain; Int 69.8 28 0.00062 29.6 8.0 71 385-456 44-118 (140)
298 PF14225 MOR2-PAG1_C: Cell mor 69.5 33 0.00071 32.8 9.1 57 234-291 76-144 (262)
299 KOG4275 Predicted E3 ubiquitin 69.3 1.1 2.4E-05 42.4 -0.9 41 83-128 300-341 (350)
300 KOG1571 Predicted E3 ubiquitin 69.0 2.2 4.7E-05 41.9 0.9 47 78-128 300-346 (355)
301 smart00504 Ubox Modified RING 68.8 2.1 4.5E-05 30.8 0.6 28 84-113 36-63 (63)
302 PF10367 Vps39_2: Vacuolar sor 68.0 5 0.00011 32.3 2.8 36 76-111 71-108 (109)
303 PF12530 DUF3730: Protein of u 67.1 1.1E+02 0.0024 28.6 13.0 137 305-457 2-152 (234)
304 KOG3161 Predicted E3 ubiquitin 66.7 4.1 8.9E-05 42.9 2.4 58 83-143 11-76 (861)
305 smart00288 VHS Domain present 66.5 36 0.00078 28.7 7.9 72 384-456 38-111 (133)
306 COG5098 Chromosome condensatio 65.4 39 0.00085 36.5 9.2 104 347-454 302-413 (1128)
307 KOG1078 Vesicle coat complex C 64.9 2.3E+02 0.0049 31.4 15.5 173 231-416 256-459 (865)
308 KOG2025 Chromosome condensatio 64.8 55 0.0012 35.5 10.1 104 302-409 84-189 (892)
309 PF08389 Xpo1: Exportin 1-like 64.1 38 0.00082 28.5 7.8 103 262-366 26-148 (148)
310 KOG2062 26S proteasome regulat 63.8 38 0.00083 36.8 8.8 83 233-330 568-651 (929)
311 PF11865 DUF3385: Domain of un 63.7 54 0.0012 28.7 8.7 140 262-411 10-155 (160)
312 KOG0827 Predicted E3 ubiquitin 63.4 5.1 0.00011 39.6 2.3 45 81-126 2-53 (465)
313 KOG1020 Sister chromatid cohes 62.8 79 0.0017 37.3 11.5 106 303-417 816-925 (1692)
314 PF04499 SAPS: SIT4 phosphatas 62.8 88 0.0019 32.7 11.4 112 344-457 21-150 (475)
315 PF05883 Baculo_RING: Baculovi 62.5 5.4 0.00012 33.6 2.0 44 83-127 26-78 (134)
316 KOG0211 Protein phosphatase 2A 61.9 2.6E+02 0.0057 31.1 15.2 203 231-452 448-660 (759)
317 PF14726 RTTN_N: Rotatin, an a 61.0 29 0.00064 27.7 5.9 65 263-327 31-95 (98)
318 cd03565 VHS_Tom1 VHS domain fa 60.7 61 0.0013 27.7 8.3 73 384-456 39-115 (141)
319 PF14500 MMS19_N: Dos2-interac 60.4 96 0.0021 29.6 10.4 137 267-413 4-153 (262)
320 KOG4464 Signaling protein RIC- 58.0 2.2E+02 0.0048 29.0 13.7 150 306-455 48-227 (532)
321 KOG3002 Zn finger protein [Gen 57.9 10 0.00022 37.0 3.2 59 80-145 45-104 (299)
322 PF13251 DUF4042: Domain of un 56.9 1.3E+02 0.0029 26.9 10.0 134 278-415 2-176 (182)
323 PF08216 CTNNBL: Catenin-beta- 56.0 24 0.00052 28.7 4.6 42 355-396 59-100 (108)
324 PRK11088 rrmA 23S rRNA methylt 56.0 4.6 9.9E-05 38.8 0.6 27 83-109 2-31 (272)
325 PF11707 Npa1: Ribosome 60S bi 55.9 2.1E+02 0.0046 28.2 17.8 162 174-335 58-240 (330)
326 KOG1820 Microtubule-associated 55.8 1.5E+02 0.0032 33.3 12.1 174 182-371 264-443 (815)
327 KOG3665 ZYG-1-like serine/thre 54.9 1.4E+02 0.003 33.0 11.7 191 194-408 494-692 (699)
328 COG5116 RPN2 26S proteasome re 54.3 83 0.0018 33.3 9.1 86 232-332 564-650 (926)
329 COG5634 Uncharacterized conser 52.9 20 0.00044 31.5 3.9 74 80-157 56-129 (223)
330 cd03569 VHS_Hrs_Vps27p VHS dom 51.8 65 0.0014 27.6 7.0 70 345-414 42-115 (142)
331 PF06012 DUF908: Domain of Unk 50.7 51 0.0011 32.6 7.0 76 277-352 237-324 (329)
332 cd03568 VHS_STAM VHS domain fa 50.3 69 0.0015 27.5 6.9 71 345-415 38-112 (144)
333 PF11864 DUF3384: Domain of un 50.2 2.4E+02 0.0051 29.4 12.2 20 275-294 42-61 (464)
334 PF12530 DUF3730: Protein of u 49.4 2.2E+02 0.0049 26.5 16.2 126 231-371 12-151 (234)
335 cd00730 rubredoxin Rubredoxin; 49.2 7.9 0.00017 26.7 0.7 13 79-91 30-42 (50)
336 KOG1086 Cytosolic sorting prot 49.1 2.8E+02 0.0061 28.4 11.5 162 108-296 7-207 (594)
337 KOG2930 SCF ubiquitin ligase, 48.8 14 0.0003 29.4 2.1 26 101-127 81-106 (114)
338 PF10363 DUF2435: Protein of u 48.3 43 0.00093 26.4 4.9 69 266-335 7-75 (92)
339 COG5218 YCG1 Chromosome conden 48.3 2E+02 0.0043 30.8 10.7 98 344-448 91-191 (885)
340 KOG2032 Uncharacterized conser 48.3 1.5E+02 0.0032 30.9 9.8 149 301-453 252-413 (533)
341 PF14663 RasGEF_N_2: Rapamycin 48.3 94 0.002 25.5 7.2 78 304-389 9-86 (115)
342 KOG1058 Vesicle coat complex C 47.8 4.3E+02 0.0093 29.3 19.0 172 185-372 148-347 (948)
343 KOG3665 ZYG-1-like serine/thre 47.8 4.3E+02 0.0092 29.3 16.4 90 365-454 494-585 (699)
344 KOG2933 Uncharacterized conser 47.7 2.1E+02 0.0046 28.0 10.2 132 305-450 90-228 (334)
345 COG5220 TFB3 Cdk activating ki 47.4 9.9 0.00021 35.1 1.3 42 83-124 10-57 (314)
346 KOG1941 Acetylcholine receptor 46.6 11 0.00024 37.3 1.5 43 83-125 365-412 (518)
347 PLN03205 ATR interacting prote 46.2 62 0.0014 32.6 6.6 111 303-413 323-446 (652)
348 KOG0211 Protein phosphatase 2A 46.0 3.2E+02 0.0069 30.5 12.6 94 357-457 533-626 (759)
349 PF14225 MOR2-PAG1_C: Cell mor 45.9 2.8E+02 0.006 26.5 16.3 140 303-455 60-216 (262)
350 PF00301 Rubredoxin: Rubredoxi 45.4 8.6 0.00019 26.2 0.4 13 79-91 30-42 (47)
351 cd03572 ENTH_epsin_related ENT 44.6 1.2E+02 0.0027 25.2 7.3 71 385-456 40-119 (122)
352 PF05290 Baculo_IE-1: Baculovi 44.1 95 0.0021 26.2 6.3 51 81-131 78-134 (140)
353 PF05605 zf-Di19: Drought indu 43.3 33 0.00071 23.9 3.2 33 82-126 1-39 (54)
354 KOG0414 Chromosome condensatio 43.3 1.4E+02 0.003 34.4 9.4 127 185-331 937-1063(1251)
355 PF10521 DUF2454: Protein of u 43.2 1.2E+02 0.0027 29.1 8.3 71 262-332 119-203 (282)
356 KOG1020 Sister chromatid cohes 43.1 2.6E+02 0.0057 33.3 11.6 140 264-415 818-962 (1692)
357 KOG4362 Transcriptional regula 42.4 11 0.00023 40.6 0.8 64 83-146 21-86 (684)
358 cd03567 VHS_GGA VHS domain fam 42.4 67 0.0014 27.5 5.6 69 263-331 39-115 (139)
359 cd03561 VHS VHS domain family; 42.3 1.3E+02 0.0028 25.3 7.3 72 345-416 38-115 (133)
360 PF13251 DUF4042: Domain of un 42.2 2.6E+02 0.0056 25.1 10.2 102 231-334 51-176 (182)
361 COG5116 RPN2 26S proteasome re 42.0 1.7E+02 0.0036 31.2 9.1 98 301-413 549-650 (926)
362 PF06012 DUF908: Domain of Unk 41.9 1E+02 0.0022 30.5 7.6 72 319-390 238-323 (329)
363 PF10363 DUF2435: Protein of u 41.8 1.2E+02 0.0026 23.8 6.5 69 347-417 6-76 (92)
364 KOG1814 Predicted E3 ubiquitin 40.9 34 0.00074 34.4 3.9 34 82-115 183-219 (445)
365 PF12726 SEN1_N: SEN1 N termin 40.9 2.8E+02 0.0062 30.7 11.7 150 306-457 444-609 (727)
366 PF10915 DUF2709: Protein of u 40.7 25 0.00055 31.3 2.7 38 83-129 87-124 (238)
367 COG5218 YCG1 Chromosome conden 40.1 5.1E+02 0.011 27.9 13.7 117 247-372 78-197 (885)
368 smart00288 VHS Domain present 40.0 1.3E+02 0.0028 25.4 7.0 69 345-413 38-111 (133)
369 KOG0298 DEAD box-containing he 39.9 12 0.00026 42.8 0.8 47 79-126 1149-1196(1394)
370 KOG0825 PHD Zn-finger protein 39.8 35 0.00076 37.2 4.0 49 76-124 89-149 (1134)
371 KOG2956 CLIP-associating prote 39.3 4.6E+02 0.01 27.2 11.9 186 215-414 284-478 (516)
372 smart00638 LPD_N Lipoprotein N 38.7 5.1E+02 0.011 27.6 16.3 241 24-329 286-542 (574)
373 KOG1940 Zn-finger protein [Gen 38.5 26 0.00055 33.6 2.6 43 83-126 158-204 (276)
374 PF03854 zf-P11: P-11 zinc fin 38.3 10 0.00022 25.6 -0.0 37 93-130 10-47 (50)
375 KOG2137 Protein kinase [Signal 38.3 92 0.002 33.8 6.8 117 231-356 400-520 (700)
376 KOG0915 Uncharacterized conser 38.2 8E+02 0.017 29.7 16.5 217 189-414 1015-1266(1702)
377 PF11791 Aconitase_B_N: Aconit 37.4 80 0.0017 27.3 5.1 26 385-411 96-121 (154)
378 PF07814 WAPL: Wings apart-lik 37.3 2.6E+02 0.0056 28.1 9.8 90 346-437 23-116 (361)
379 COG4530 Uncharacterized protei 37.2 24 0.00051 28.5 1.8 30 83-112 9-43 (129)
380 PF01347 Vitellogenin_N: Lipop 36.7 2.9E+02 0.0062 29.8 10.8 59 263-331 487-552 (618)
381 KOG4231 Intracellular membrane 35.7 49 0.0011 34.4 4.2 70 385-455 329-398 (763)
382 PF01347 Vitellogenin_N: Lipop 35.3 1.6E+02 0.0034 31.8 8.5 140 262-417 395-557 (618)
383 PF07539 DRIM: Down-regulated 34.7 2.9E+02 0.0063 23.6 8.3 89 296-393 10-98 (141)
384 PF12231 Rif1_N: Rap1-interact 34.3 5E+02 0.011 26.1 12.1 137 316-456 59-204 (372)
385 KOG4464 Signaling protein RIC- 34.2 5.3E+02 0.011 26.4 12.9 129 266-394 49-198 (532)
386 PF09538 FYDLN_acid: Protein o 34.2 22 0.00048 28.9 1.3 26 83-108 9-39 (108)
387 cd00197 VHS_ENTH_ANTH VHS, ENT 33.4 2.6E+02 0.0056 22.6 7.9 71 384-455 38-114 (115)
388 PF10272 Tmpp129: Putative tra 33.4 33 0.00071 34.3 2.5 38 96-133 301-355 (358)
389 PF14666 RICTOR_M: Rapamycin-i 33.3 4E+02 0.0088 24.8 14.8 129 316-456 77-225 (226)
390 PF00790 VHS: VHS domain; Int 32.6 1.3E+02 0.0029 25.5 6.0 71 345-415 43-120 (140)
391 PF08216 CTNNBL: Catenin-beta- 32.4 41 0.00088 27.4 2.5 37 186-224 61-97 (108)
392 COG5656 SXM1 Importin, protein 32.3 7.4E+02 0.016 27.5 16.0 234 213-454 407-668 (970)
393 KOG0915 Uncharacterized conser 30.4 6.8E+02 0.015 30.2 12.3 148 304-460 999-1164(1702)
394 PRK14707 hypothetical protein; 30.1 1.2E+03 0.027 29.5 20.5 260 177-449 126-396 (2710)
395 PF04499 SAPS: SIT4 phosphatas 30.1 2.6E+02 0.0057 29.3 8.6 72 260-331 60-147 (475)
396 KOG4337 Microsomal triglycerid 29.8 7.6E+02 0.017 26.9 15.1 149 258-414 355-524 (896)
397 PF04064 DUF384: Domain of unk 29.5 2.1E+02 0.0046 20.4 5.5 46 366-412 2-48 (58)
398 cd08050 TAF6 TATA Binding Prot 28.7 4.9E+02 0.011 25.9 10.1 107 263-369 211-338 (343)
399 PF11864 DUF3384: Domain of un 28.6 6.8E+02 0.015 26.0 18.8 90 347-442 216-316 (464)
400 KOG2073 SAP family cell cycle 28.5 3.1E+02 0.0066 30.9 9.1 65 375-439 182-251 (838)
401 KOG1832 HIV-1 Vpr-binding prot 28.4 2.2E+02 0.0048 32.0 7.7 88 232-323 365-459 (1516)
402 PF12463 DUF3689: Protein of u 28.3 5.7E+02 0.012 25.0 12.2 104 319-422 48-182 (303)
403 KOG0883 Cyclophilin type, U bo 28.1 28 0.0006 34.7 1.0 65 80-146 98-173 (518)
404 PLN02195 cellulose synthase A 28.1 44 0.00096 37.7 2.7 45 85-129 8-59 (977)
405 TIGR02300 FYDLN_acid conserved 27.4 33 0.00071 28.7 1.2 26 83-108 9-39 (129)
406 PF14353 CpXC: CpXC protein 27.3 35 0.00075 28.5 1.4 47 83-129 1-49 (128)
407 KOG2933 Uncharacterized conser 27.3 3E+02 0.0065 27.0 7.7 142 171-330 87-232 (334)
408 PF01603 B56: Protein phosphat 27.1 6.9E+02 0.015 25.5 12.3 89 283-371 111-204 (409)
409 KOG1992 Nuclear export recepto 27.0 9.3E+02 0.02 27.1 12.0 41 263-303 499-540 (960)
410 PLN02189 cellulose synthase 26.2 39 0.00085 38.4 1.9 46 84-129 35-87 (1040)
411 COG5656 SXM1 Importin, protein 25.9 5.9E+02 0.013 28.3 10.2 141 174-334 6-157 (970)
412 PF07800 DUF1644: Protein of u 25.9 18 0.0004 31.3 -0.5 20 82-101 1-20 (162)
413 PRK05776 DNA topoisomerase I; 25.4 1.8E+02 0.0039 31.9 6.8 79 19-99 532-613 (670)
414 PF14726 RTTN_N: Rotatin, an a 24.8 3.6E+02 0.0078 21.5 7.2 68 383-453 30-97 (98)
415 KOG2199 Signal transducing ada 24.3 3.6E+02 0.0079 27.3 7.8 72 384-456 46-118 (462)
416 COG1773 Rubredoxin [Energy pro 24.0 38 0.00081 23.9 0.8 14 78-91 31-44 (55)
417 PRK14707 hypothetical protein; 24.0 1.6E+03 0.034 28.6 19.8 264 174-451 165-440 (2710)
418 KOG3579 Predicted E3 ubiquitin 23.8 40 0.00087 32.1 1.2 41 83-123 268-316 (352)
419 PF14446 Prok-RING_1: Prokaryo 23.6 56 0.0012 23.0 1.6 28 83-110 5-36 (54)
420 cd08050 TAF6 TATA Binding Prot 23.4 5.4E+02 0.012 25.6 9.2 96 267-371 183-297 (343)
421 PF09324 DUF1981: Domain of un 23.3 2.8E+02 0.006 21.4 5.7 67 382-453 16-85 (86)
422 PF08506 Cse1: Cse1; InterPro 23.1 5.9E+02 0.013 25.7 9.5 132 186-327 226-370 (370)
423 PHA02862 5L protein; Provision 22.8 67 0.0015 27.5 2.2 45 85-130 4-54 (156)
424 KOG1566 Conserved protein Mo25 22.5 7.5E+02 0.016 24.4 14.8 213 172-394 79-311 (342)
425 PF00096 zf-C2H2: Zinc finger, 22.4 27 0.00059 19.1 -0.1 13 84-96 1-13 (23)
426 PF10274 ParcG: Parkin co-regu 22.4 2.6E+02 0.0056 25.1 6.0 73 263-335 39-112 (183)
427 PF07295 DUF1451: Protein of u 22.4 3.7E+02 0.0081 23.2 6.8 74 27-100 44-131 (146)
428 KOG1949 Uncharacterized conser 22.3 1.1E+03 0.024 26.2 11.4 142 264-413 176-331 (1005)
429 KOG2312 Predicted transcriptio 22.1 11 0.00024 40.1 -3.1 151 240-392 13-170 (847)
430 PLN03086 PRLI-interacting fact 22.0 1.1E+02 0.0023 32.8 4.0 51 79-129 449-515 (567)
431 PF03130 HEAT_PBS: PBS lyase H 21.7 71 0.0015 18.6 1.6 25 320-354 2-26 (27)
432 PHA02825 LAP/PHD finger-like p 21.7 1.1E+02 0.0024 26.6 3.4 47 83-130 8-60 (162)
433 PF08711 Med26: TFIIS helical 21.7 2.7E+02 0.0059 18.9 5.7 46 407-454 2-48 (53)
434 PF06844 DUF1244: Protein of u 21.3 61 0.0013 23.7 1.4 12 105-116 12-23 (68)
435 TIGR03504 FimV_Cterm FimV C-te 21.2 1.4E+02 0.0029 20.0 3.0 29 426-454 16-44 (44)
436 cd00183 TFIIS_I N-terminal dom 21.1 3.6E+02 0.0078 20.1 7.3 55 399-455 18-72 (76)
437 PF04388 Hamartin: Hamartin pr 20.3 1.2E+03 0.025 25.7 12.3 61 356-416 82-143 (668)
438 COG5236 Uncharacterized conser 20.1 74 0.0016 31.2 2.2 46 82-128 60-107 (493)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=2.4e-27 Score=268.53 Aligned_cols=278 Identities=18% Similarity=0.256 Sum_probs=241.7
Q ss_pred hhhHHHHHHhhcC---CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcc
Q 012404 171 RDHFLSLLKKMSA---TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 247 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~---~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 247 (464)
...+..+++.|.+ +.+.++.|+..|+.+++.++++|..|.+..|+||.|+.+|+ +.++.++++|+.+|.+|
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~------sg~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR------SGTLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc------CCCHHHHHHHHHHHHHH
Confidence 4578889999953 36889999999999999999999999876899999999998 45689999999999999
Q ss_pred ccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC---cch-hhhcccCchHHHHHhcccCC---HHHH
Q 012404 248 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD---SNK-EVIGKSGALKPLIDLLDEGH---QSAM 320 (464)
Q Consensus 248 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~---~~~-~~i~~~g~i~~Lv~lL~~~~---~~~~ 320 (464)
+.+++++..|+.. |++|.|+.+|++|+++.+++|+++|++|+.+. .++ ..++..|+||.|+.+|++++ ..++
T Consensus 86 S~~e~nk~~Iv~~-GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 86 CKEEDLRVKVLLG-GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred hcCHHHHHHHHHc-CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 9999999999974 79999999999999999999999999999864 344 34567999999999999873 2356
Q ss_pred HHHHHHHHHhccCchhhhH-HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccC
Q 012404 321 KDVASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIREST 396 (464)
Q Consensus 321 ~~al~aL~~L~~~~~~~~~-iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~ 396 (464)
+.++.+|+|||..++++.+ +++.|+||.|+++|.++ ..++.|+++|.+++.+ ++++..+++.|+|+.|+++|+++.
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~ 244 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN 244 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC
Confidence 7788999999999998865 57999999999999876 6789999999999876 779999999999999999998765
Q ss_pred ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCC---------HHHHHHHHHHHHHHhc
Q 012404 397 CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT---------ARAKRKATGILERLKR 456 (464)
Q Consensus 397 ~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~---------~~~k~~A~~~L~~l~~ 456 (464)
+..+|++|+++|++|+..+++..+.++ +.|+++.|++++...+ ...++.|.|+|.|+++
T Consensus 245 ~~~VRE~AA~AL~nLAs~s~e~r~~Iv-~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 245 EVSVRAEAAGALEALSSQSKEAKQAIA-DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHH-HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 578999999999999998876655555 6899999999987543 3469999999999886
No 2
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=217.32 Aligned_cols=283 Identities=16% Similarity=0.239 Sum_probs=253.5
Q ss_pred cccchhhhhhHHHHHHhh-cCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHH
Q 012404 164 EGITEADRDHFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVIT 242 (464)
Q Consensus 164 ~~~~~~~~~~i~~Lv~~L-s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~ 242 (464)
++..+.+.+++..|+..+ ....+.|..++++|.+|+. .+++|..|.. .|++..|..+-+ +.|..++.++..
T Consensus 118 nk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT-~d~nk~kiA~-sGaL~pltrLak------skdirvqrnatg 189 (550)
T KOG4224|consen 118 NKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLAT-FDSNKVKIAR-SGALEPLTRLAK------SKDIRVQRNATG 189 (550)
T ss_pred CceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhc-cccchhhhhh-ccchhhhHhhcc------cchhhHHHHHHH
Confidence 344456667777776655 5568899999999999999 5899999999 899999999655 567899999999
Q ss_pred HHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccC--chHHHHHhcccCCHHHH
Q 012404 243 TLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSG--ALKPLIDLLDEGHQSAM 320 (464)
Q Consensus 243 ~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~ 320 (464)
+|.|+....+|++.++.+| .+|.||.++++++..++..++.+|.+++....++..+.+.| .|+.||+|+++++++++
T Consensus 190 aLlnmThs~EnRr~LV~aG-~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvk 268 (550)
T KOG4224|consen 190 ALLNMTHSRENRRVLVHAG-GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVK 268 (550)
T ss_pred HHHHhhhhhhhhhhhhccC-CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHH
Confidence 9999999999999999875 79999999999999999999999999999999999999987 99999999999999999
Q ss_pred HHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCCh
Q 012404 321 KDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD 398 (464)
Q Consensus 321 ~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 398 (464)
..|..+|.||+...+-...+++.|.+|.++++|+++ ......+..+.|++.+|-+...+.++|.+..||.+|+.++++
T Consensus 269 cqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnE 348 (550)
T KOG4224|consen 269 CQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNE 348 (550)
T ss_pred HHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCch
Confidence 999999999999999999999999999999999987 567778889999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 399 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 399 ~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
+.|-+|+.+||+|+.......+.++ +.|+++.+..|+.+|...++..-...+..|+-
T Consensus 349 eiqchAvstLrnLAasse~n~~~i~-esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASSEHNVSVIR-ESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHh-hcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 9999999999999997765544444 79999999999999999999888888877754
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=1.9e-25 Score=253.18 Aligned_cols=283 Identities=19% Similarity=0.220 Sum_probs=243.3
Q ss_pred chhhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHH
Q 012404 167 TEADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 245 (464)
Q Consensus 167 ~~~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 245 (464)
.+...++++.|++.|+++ ...|+.|++.|++++..+++++..+.+ .|+||.|+.+|+ +.+..++++|+++|.
T Consensus 441 aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~------s~~~~iqeeAawAL~ 513 (2102)
T PLN03200 441 ALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA-AGGIPPLVQLLE------TGSQKAKEDSATVLW 513 (2102)
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 455678999999999754 678899999999999988889999999 999999999999 557899999999999
Q ss_pred ccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcch-----------------------------
Q 012404 246 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK----------------------------- 296 (464)
Q Consensus 246 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~----------------------------- 296 (464)
|++.++++...++...|++|.|+++|++++.+.+..|+++|++|+...++.
T Consensus 514 NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 514 NLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLS 593 (2102)
T ss_pred HHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Confidence 999988776666655579999999999999999999999999996432211
Q ss_pred ---------hhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHH
Q 012404 297 ---------EVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLA 364 (464)
Q Consensus 297 ---------~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~ 364 (464)
......|+++.|++||+++++..++.|+++|.+++... +.+..++..|+||+|+.+|.++ ..+..|++
T Consensus 594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred hcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence 01123689999999999999999999999999999865 6688889999999999999965 68899999
Q ss_pred HHHHhhCC--HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHH
Q 012404 365 ILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTAR 442 (464)
Q Consensus 365 ~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~ 442 (464)
+|.+|+.+ ++++..+++.|+|+.|++++... +...++.|+.+|.+|+..... ..++. ..|++++|++++++|+++
T Consensus 674 AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~~e~-~~ei~-~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 674 ALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSDPEV-AAEAL-AEDIILPLTRVLREGTLE 750 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcCchH-HHHHH-hcCcHHHHHHHHHhCChH
Confidence 99999964 55677889999999999999875 489999999999999998754 34555 478899999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 012404 443 AKRKATGILERLKRTVN 459 (464)
Q Consensus 443 ~k~~A~~~L~~l~~~~~ 459 (464)
.|+.|+++|-+|++...
T Consensus 751 ~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 751 GKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999998876543
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.8e-25 Score=221.48 Aligned_cols=279 Identities=15% Similarity=0.146 Sum_probs=240.7
Q ss_pred hhhHHHHHHhhcC--CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
.|.++.+|+.|+. ++..|.+|+++|.+++..+.+.-..+.+ .|++|.++.+|. +.+..+++.|+++|.|++
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~-agavp~fi~Ll~------s~~~~v~eQavWALgNIa 180 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD-AGAVPIFIQLLS------SPSADVREQAVWALGNIA 180 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc-CCchHHHHHHhc------CCcHHHHHHHHHHHhccc
Confidence 4889999999964 3788999999999999988888888888 899999999999 567899999999999999
Q ss_pred cCcchHHHHhcCCCChHHHHHHHhcCCH-HHHHHHHHHHHHhcccCcchhhhcc-cCchHHHHHhcccCCHHHHHHHHHH
Q 012404 249 IHDNNKKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASA 326 (464)
Q Consensus 249 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~a 326 (464)
.+...-+.++-..|+++.|+.++...+. ...++++|+|.||+...+....+.. ..++|.|..++.+.++++..+|+||
T Consensus 181 gds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WA 260 (514)
T KOG0166|consen 181 GDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWA 260 (514)
T ss_pred cCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9987554444445789999999988764 7899999999999997754444333 5789999999999999999999999
Q ss_pred HHHhccCchhhhH-HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHHHhccCChhHHH
Q 012404 327 IFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKE 402 (464)
Q Consensus 327 L~~L~~~~~~~~~-iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 402 (464)
|.+|+.....+.. +++.|++|.|+++|... .++--|+.++.|++.+.+ -.+.+++.|+++.|..++..+..+..+.
T Consensus 261 lsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk 340 (514)
T KOG0166|consen 261 LSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKK 340 (514)
T ss_pred HHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHH
Confidence 9999977655554 56899999999999865 677789999999999865 4567789999999999999654466889
Q ss_pred HHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 403 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 403 ~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
.|+|++.|++.++.++.+.++. +|+++.|+.+++.++.++|+.|+|++.|+...
T Consensus 341 EAcW~iSNItAG~~~qiqaVid-a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 341 EACWTISNITAGNQEQIQAVID-ANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHHHHHhhcCCHHHHHHHHH-cccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 9999999999999998888885 89999999999999999999999999998643
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-24 Score=203.23 Aligned_cols=285 Identities=17% Similarity=0.223 Sum_probs=253.2
Q ss_pred CccccchhhhhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHH
Q 012404 162 NEEGITEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDV 240 (464)
Q Consensus 162 ~~~~~~~~~~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A 240 (464)
+.++.-++..|++..+.+.-++ ....|..+..+|.++.. +.++|+.++. .|++|.|+++++ +.|++++..+
T Consensus 157 d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~-aG~lpvLVsll~------s~d~dvqyyc 228 (550)
T KOG4224|consen 157 DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVH-AGGLPVLVSLLK------SGDLDVQYYC 228 (550)
T ss_pred ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhc-cCCchhhhhhhc------cCChhHHHHH
Confidence 4456667778888888883333 36788999999999998 7899999999 999999999999 5689999999
Q ss_pred HHHHHccccCcchHHHHhcCC-CChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHH
Q 012404 241 ITTLLNLSIHDNNKKLVAETP-MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSA 319 (464)
Q Consensus 241 ~~~L~~Ls~~~~~~~~i~~~~-~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 319 (464)
..++.|++.+..+++.++..+ .++|.|++++.++++.++..|..+|.+|+...++...|+++|.+|.+++||+++....
T Consensus 229 ttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pl 308 (550)
T KOG4224|consen 229 TTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPL 308 (550)
T ss_pred HHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhH
Confidence 999999999998998888763 5899999999999999999999999999999999999999999999999999887778
Q ss_pred HHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhcc
Q 012404 320 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES 395 (464)
Q Consensus 320 ~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~ 395 (464)
....+.++.|++..+-|-..+++.|.+.+||++|.-+ ..+-+|..+|+||+.. ..++..|.+.|+|+.+..++..+
T Consensus 309 ilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~ 388 (550)
T KOG4224|consen 309 ILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG 388 (550)
T ss_pred HHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC
Confidence 8888999999999999999999999999999999844 5889999999999995 66899999999999999999976
Q ss_pred CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 396 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 396 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+-.+|+.-..++..|+.+...+ ..+.+.|.+++|+.+..+.+.+++..|+.+|-|++.-
T Consensus 389 -pvsvqseisac~a~Lal~d~~k--~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 389 -PVSVQSEISACIAQLALNDNDK--EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred -ChhHHHHHHHHHHHHHhccccH--HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 4888988888888888876543 5555799999999999999999999999999999753
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-23 Score=210.26 Aligned_cols=286 Identities=15% Similarity=0.163 Sum_probs=244.1
Q ss_pred chhhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHH
Q 012404 167 TEADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 245 (464)
Q Consensus 167 ~~~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 245 (464)
...+.|+++.++..+.++ ...+++|+++|.+++.+++.+|..+.+ .|+++.|+.++.... ......++.|+|.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~-~g~l~pLl~~l~~~~-----~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLS-CGALDPLLRLLNKSD-----KLSMLRNATWTLS 220 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHh-hcchHHHHHHhcccc-----chHHHHHHHHHHH
Confidence 345678999999999765 778999999999999999999999999 999999999998431 1367899999999
Q ss_pred ccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHH
Q 012404 246 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 324 (464)
Q Consensus 246 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al 324 (464)
||+.+......+..-..++|.|..+|.+.+.++...|+|+|.+|+... +.-..+++.|+++.|+++|...++.++..|+
T Consensus 221 Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaL 300 (514)
T KOG0166|consen 221 NLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPAL 300 (514)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHH
Confidence 999988533222222247999999999999999999999999999765 5556778999999999999999989999999
Q ss_pred HHHHHhccCchhhhHH-HhcCcHHHHHHHHcC-C--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChh
Q 012404 325 SAIFNLCITHENKARA-VRDGGVSVILKKIMD-G--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDR 399 (464)
Q Consensus 325 ~aL~~L~~~~~~~~~i-v~~g~v~~Lv~lL~~-~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 399 (464)
+++.|+....+...+. ++.|++|.|..++.. + ..+..|+|++.|++.+ .+..+++.++|.+|.|+.+|+++. -+
T Consensus 301 RaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~ 379 (514)
T KOG0166|consen 301 RAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FD 379 (514)
T ss_pred hhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hH
Confidence 9999999988777665 588999999999984 3 5788999999999986 678899999999999999999875 88
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcccc
Q 012404 400 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 400 ~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~ 459 (464)
.|..|+|++.|++.......-..+.+.|.+++|..|+...+.++-..+...|.++-++.+
T Consensus 380 ~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 380 IRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999987654433444468999999999988888899999999999977643
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.90 E-value=1e-22 Score=190.26 Aligned_cols=278 Identities=15% Similarity=0.127 Sum_probs=232.7
Q ss_pred hhhhhHHHHHHhhcCC--chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHc
Q 012404 169 ADRDHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 246 (464)
Q Consensus 169 ~~~~~i~~Lv~~Ls~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 246 (464)
.+.|.++.+++.+.+. .-.+.+|+++|.+++......-+.+.+ .|++|.++.+|. +.+.++++.++|+|.|
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd-~~AVPlfiqlL~------s~~~~V~eQavWALGN 183 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD-AGAVPLFIQLLS------STEDDVREQAVWALGN 183 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe-CCchHHHHHHHc------CchHHHHHHHHHHhcc
Confidence 3468899999999433 445789999999999966555566777 899999999999 5567999999999999
Q ss_pred cccCcch-HHHHhcCCCChHHHHHHHhcCC--HHHHHHHHHHHHHhcccCcchhhhc-ccCchHHHHHhcccCCHHHHHH
Q 012404 247 LSIHDNN-KKLVAETPMVIPLLMDALRSGT--IETRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDEGHQSAMKD 322 (464)
Q Consensus 247 Ls~~~~~-~~~i~~~~~~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~ 322 (464)
++.+.+. |..+... |++..++.+|.+.. ....+++.|+|.||+........-. -..++|.|.+|+.+.++++..+
T Consensus 184 iAGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvD 262 (526)
T COG5064 184 IAGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVD 262 (526)
T ss_pred ccCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 9998874 5555554 68888999998764 5789999999999998643221111 1356899999999999999999
Q ss_pred HHHHHHHhccCchhhhH-HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHH-HHHHhcCcHHHHHHHHhccCCh
Q 012404 323 VASAIFNLCITHENKAR-AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAV-EEIGDLGGVSCMLRIIRESTCD 398 (464)
Q Consensus 323 al~aL~~L~~~~~~~~~-iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~ 398 (464)
|+|||..|+..+..+.. +++.|..+.|+++|.++ .++.-|+....|+..+.+.+ +.++++|+++.+..+|.+.. +
T Consensus 263 A~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e 341 (526)
T COG5064 263 ACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-E 341 (526)
T ss_pred HHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-h
Confidence 99999999988765554 56889999999999976 56778999999999987654 56689999999999998765 7
Q ss_pred hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 399 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 399 ~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
..+..|+|.+.|++..+.++.+.++ ++..+++|++++..-+-.+|+.|+|++.|...
T Consensus 342 ~irKEaCWTiSNITAGnteqiqavi-d~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 342 NIRKEACWTISNITAGNTEQIQAVI-DANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred hhhhhhheeecccccCCHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8999999999999999999888888 48999999999999998999999999998754
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.87 E-value=4.9e-23 Score=156.54 Aligned_cols=72 Identities=47% Similarity=0.907 Sum_probs=63.5
Q ss_pred CCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcC
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQG 151 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~ 151 (464)
+|++|+||||+++|+|||++|+||+|||++|++|+..++.+||+|+++++..+++||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999877899999999999999999999999999999874
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=5e-21 Score=179.07 Aligned_cols=279 Identities=13% Similarity=0.120 Sum_probs=238.3
Q ss_pred hhhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHc
Q 012404 168 EADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 246 (464)
Q Consensus 168 ~~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 246 (464)
..+.+++|.+++.|+++ ..++++++++|.+++-+++.+|..+.+ .|+++.|+.+|.+. ..+.....++.|+|.|
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~-~galeplL~ll~ss----~~~ismlRn~TWtLSN 227 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQ-CGALEPLLGLLLSS----AIHISMLRNATWTLSN 227 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHh-cCchHHHHHHHHhc----cchHHHHHHhHHHHHH
Confidence 45678999999999776 677899999999999999999999999 99999999999843 2356788999999999
Q ss_pred cccCcch---HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHH
Q 012404 247 LSIHDNN---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKD 322 (464)
Q Consensus 247 Ls~~~~~---~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 322 (464)
|+.+... -..|. .++|.|.+++.+.++++...|+|+|..|+... +.-..+.+.|..+.|+++|..++..++.-
T Consensus 228 lcRGknP~P~w~~is---qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 228 LCRGKNPPPDWSNIS---QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred hhCCCCCCCchHHHH---HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 9987642 22332 26999999999999999999999999999876 44456778999999999999999999999
Q ss_pred HHHHHHHhccCchhhhHH-HhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCCh
Q 012404 323 VASAIFNLCITHENKARA-VRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCD 398 (464)
Q Consensus 323 al~aL~~L~~~~~~~~~i-v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~ 398 (464)
|++.+.|+....+.+..+ +++|+++.+-.+|+++ .++.+|||.+.|+..+ .+..+++.+++.+|.|+++|..-. -
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae-~ 383 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE-Y 383 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH-H
Confidence 999999999988777665 5889999999999876 7899999999999886 678889999999999999998653 7
Q ss_pred hHHHHHHHHHHHHhccC---hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 399 RNKENCIAILHTICLSD---RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 399 ~~~~~A~~~L~~L~~~~---~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
..+..|+|++.|.+.+. |+..+-++ +.|++.+|-.++...+.++-+-+...++|+-+
T Consensus 384 k~kKEACWAisNatsgg~~~PD~iryLv-~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 384 KIKKEACWAISNATSGGLNRPDIIRYLV-SQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHHHHHhhhccccCCchHHHHHH-HccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 88999999999998753 45555555 57999999999988888887788888887644
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=8.9e-19 Score=184.95 Aligned_cols=284 Identities=18% Similarity=0.201 Sum_probs=234.2
Q ss_pred hhhhHHHHHHhhcCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccc---------------------
Q 012404 170 DRDHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC--------------------- 228 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~--------------------- 228 (464)
+.+-+...++.|-.....+..+...|..|++ +++|-..+..+...+..|.+.|+....
T Consensus 121 ~~~~~d~yiE~lYe~~~ek~~~~~~il~La~-~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~ 199 (708)
T PF05804_consen 121 SINDLDEYIELLYEDIPEKIRGTSLILQLAR-NPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQ 199 (708)
T ss_pred CHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Confidence 3456778888887666778888899999999 777766666646677777777754221
Q ss_pred ------------------------------c------C-CCC---------------------hhhHHHHHHHHHccccC
Q 012404 229 ------------------------------E------N-GIN---------------------PNLQEDVITTLLNLSIH 250 (464)
Q Consensus 229 ------------------------------~------~-~~~---------------------~~~~~~A~~~L~~Ls~~ 250 (464)
+ . ... ......+..+|.||+.+
T Consensus 200 fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAed 279 (708)
T PF05804_consen 200 FHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAED 279 (708)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0 000 01223456679999999
Q ss_pred cchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHh
Q 012404 251 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 330 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 330 (464)
......+... |+++.|+++|++++.+....++++|.+||...+|+..+.+.|+|+.|++++.+++..++..++++|+||
T Consensus 280 ~~ve~kM~~~-~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL 358 (708)
T PF05804_consen 280 PRVELKMVNK-GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL 358 (708)
T ss_pred hHHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 9999998876 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHH
Q 012404 331 CITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 410 (464)
Q Consensus 331 ~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 410 (464)
|.+.++|..|++.|++|.|+.+|.++..+..|+.+|.+||..+++|..+...++++.+++++..+..+.+...+++++.|
T Consensus 359 Sfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 359 SFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred CcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999988776557777788999999
Q ss_pred HhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccccc
Q 012404 411 ICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 460 (464)
Q Consensus 411 L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~~ 460 (464)
|+.+.+ +++.+. +.++++.|++......... ...++||++.+++.
T Consensus 439 La~~~r-naqlm~-~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~ 483 (708)
T PF05804_consen 439 LALNKR-NAQLMC-EGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGP 483 (708)
T ss_pred HhcCHH-HHHHHH-hcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCch
Confidence 999765 445555 5678898888876654332 33589999988744
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=6.4e-18 Score=178.48 Aligned_cols=254 Identities=20% Similarity=0.230 Sum_probs=219.3
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCCh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 264 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i 264 (464)
.....-+...|.+++. +..+...+.+ .|+|+.|+.+|. ..+.+....++..|.+||...+|+..|.+. |++
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~-~~iV~~Lv~~Ld------r~n~ellil~v~fLkkLSi~~ENK~~m~~~-giV 333 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVN-KGIVSLLVKCLD------RENEELLILAVTFLKKLSIFKENKDEMAES-GIV 333 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHh-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCH
Confidence 3444567778999999 7888889998 999999999998 446899999999999999999999999987 599
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcC
Q 012404 265 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG 344 (464)
Q Consensus 265 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g 344 (464)
+.|++++.+++.+.+..+.++|+|||.+.+.+..+++.|++|.|+.+|.++ ..+..++.+|++||..+++|..+...+
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~Td 411 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTD 411 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999865 456779999999999999999988889
Q ss_pred cHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHH
Q 012404 345 GVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKA 421 (464)
Q Consensus 345 ~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 421 (464)
++|.|+++|..+ .+...+++++.||+.++.+.+.+.+.|+++.|++...+.. + .-...++.|++.+++. .+.
T Consensus 412 cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-D---~lLlKlIRNiS~h~~~-~k~ 486 (708)
T PF05804_consen 412 CIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-D---PLLLKLIRNISQHDGP-LKE 486 (708)
T ss_pred hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-c---HHHHHHHHHHHhcCch-HHH
Confidence 999999988643 4566789999999999999999999899999998776544 2 2355799999998854 345
Q ss_pred HHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 012404 422 MREEESTHGTISKLAQDG-TARAKRKATGILERLKR 456 (464)
Q Consensus 422 ~~~~~g~~~~L~~Ll~~g-~~~~k~~A~~~L~~l~~ 456 (464)
.+ .++++.|+.++..+ ++...-.+.++|.|+.-
T Consensus 487 ~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 487 LF--VDFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 55 37899999988776 66699999999999974
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.5e-15 Score=142.48 Aligned_cols=279 Identities=17% Similarity=0.237 Sum_probs=231.0
Q ss_pred hHHHHHHhhc---CCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 173 HFLSLLKKMS---ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 173 ~i~~Lv~~Ls---~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
+...+++.|. ++.+.....+..+...+..++.||+.+.+ .++.+.+...|.... ...+...+.++++.|..
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~-~~il~Li~~~l~~~g-----k~~~VRel~~a~r~l~~ 219 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFME-LKILELILQVLNREG-----KTRTVRELYDAIRALLT 219 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHH-hhHHHHHHHHHcccC-----ccHHHHHHHHHHHHhcC
Confidence 4556666663 33555667788888888889999999999 999999998887542 12678889999999987
Q ss_pred Ccch----------HHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC---
Q 012404 250 HDNN----------KKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--- 315 (464)
Q Consensus 250 ~~~~----------~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--- 315 (464)
+|+. .+.|+..+ .+..|++.|+.+ ++.....+..+|..|+..++.+..|.+.|++..|+.++.+.
T Consensus 220 dDDiRV~fg~ah~hAr~ia~e~-~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~ 298 (461)
T KOG4199|consen 220 DDDIRVVFGQAHGHARTIAKEG-ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQ 298 (461)
T ss_pred CCceeeecchhhHHHHHHHHhh-hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchh
Confidence 7763 34555543 678899999988 78999999999999999999999999999999999999874
Q ss_pred -CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc----CCchHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHH
Q 012404 316 -HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM----DGVHVDELLAILAMLST-NHRAVEEIGDLGGVSCML 389 (464)
Q Consensus 316 -~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~----~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv 389 (464)
+....+.++..|..|+.++.++..+|+.|+.+.++.++. ++.+.+.++.+++-||- .|++...+++.|+....|
T Consensus 299 ~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~av 378 (461)
T KOG4199|consen 299 GNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAV 378 (461)
T ss_pred hHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHH
Confidence 234567899999999999999999999999999999885 34688899999999997 488889999999999999
Q ss_pred HHHhcc-CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccccc
Q 012404 390 RIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 460 (464)
Q Consensus 390 ~ll~~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~~ 460 (464)
+.|+.. .-..+|.+|++++.|+..++.+.+..++ ..+++.|+.......+.....|..+||-|.-...+
T Consensus 379 qAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l--~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~l 448 (461)
T KOG4199|consen 379 QAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL--ANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYL 448 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH--hccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhh
Confidence 999863 2367889999999999999987766666 57888899988888888888899999988766554
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=1.9e-16 Score=169.94 Aligned_cols=265 Identities=19% Similarity=0.173 Sum_probs=223.1
Q ss_pred HHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccc------cCCCChhhHHHHHHHHHccccCcc-hHHHHhcCCC
Q 012404 190 EAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKC------ENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPM 262 (464)
Q Consensus 190 ~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~------~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~ 262 (464)
.|+..|..++. +++.|..+-+ .|++..+-.+|..... ....+..++..|..+|.||.+++. ||..+....|
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~E-LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 78888999999 8999999999 9999999888763211 001134688899999999999996 7788877779
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhccc-Ccc-hhhhcccCchHHHHHhc-ccCCHHHHHHHHHHHHHhccCc-hhhh
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSAL-DSN-KEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCITH-ENKA 338 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~-~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~~~-~~~~ 338 (464)
++..+|..|.+...+....-+.+|.||+.. |.| +..+.+.|-+..|+..- .......++..+.|||||+.+. +||.
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 999999999999999999999999999974 444 55566789999998764 4445678999999999999876 8999
Q ss_pred HHHhc-CcHHHHHHHHcCC------chHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHH
Q 012404 339 RAVRD-GGVSVILKKIMDG------VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 407 (464)
Q Consensus 339 ~iv~~-g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~ 407 (464)
.|... |++..||.+|.-. .+.+.|-+||.|+++ +++.|+.+.+++.+..|+..|++. +-.+..+++++
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGT 553 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNACGT 553 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecchhh
Confidence 99875 9999999999732 578999999999987 477889999999999999999964 47788999999
Q ss_pred HHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 408 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 408 L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
||||..++++. ++++...|+++.|..|+++....+-+-++.+|+|+--+.
T Consensus 554 LWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 554 LWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999876 566777999999999999999888899999999886554
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.4e-15 Score=139.33 Aligned_cols=262 Identities=18% Similarity=0.275 Sum_probs=210.5
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc-cCcchHHHHhcCCCC
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS-IHDNNKKLVAETPMV 263 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls-~~~~~~~~i~~~~~~ 263 (464)
...-.+++.+|..+....|+. .+ ..+...++.+|... .++.++.......+..-+ .++.||..+++. ++
T Consensus 121 ~~~l~ksL~al~~lt~~qpdl----~d-a~g~~vvv~lL~~~----~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~i 190 (461)
T KOG4199|consen 121 ESVLKKSLEAINSLTHKQPDL----FD-AEAMAVVLKLLALK----VESEEVTLLTLQWLQKACIMHEVNRQLFMEL-KI 190 (461)
T ss_pred hhHHHHHHHHHHHhhcCCcch----hc-cccHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hH
Confidence 445567788888777755554 44 67888899999754 335666666666666654 455689999987 58
Q ss_pred hHHHHHHHh-cCCHHHHHHHHHHHHHhcccCcchhhhc----------ccCchHHHHHhcccC-CHHHHHHHHHHHHHhc
Q 012404 264 IPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIG----------KSGALKPLIDLLDEG-HQSAMKDVASAIFNLC 331 (464)
Q Consensus 264 i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~----------~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~ 331 (464)
.|.+...|. .|...+.+.+.++++-|...++.|..++ ..|+...|++.+..+ +|.....+..+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 998886665 4556788889999999999888766555 367889999999887 8999999999999999
Q ss_pred cCchhhhHHHhcCcHHHHHHHHcCC------chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHh-ccCChhHHHHH
Q 012404 332 ITHENKARAVRDGGVSVILKKIMDG------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR-ESTCDRNKENC 404 (464)
Q Consensus 332 ~~~~~~~~iv~~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~A 404 (464)
..++.+..+++.|++..|++++.+. .+...++..|..|+.+.+++..|++.||.+.++.++. ..+++.+-+.+
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999999999863 3567799999999999999999999999999996554 46679999999
Q ss_pred HHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--CHHHHHHHHHHHHHHhcc
Q 012404 405 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGILERLKRT 457 (464)
Q Consensus 405 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g--~~~~k~~A~~~L~~l~~~ 457 (464)
+.++..||-+.|++...++ +.|+-...++-+... ...+|++|++++||+-..
T Consensus 351 ~a~i~~l~LR~pdhsa~~i-e~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAI-EAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHHhcCcchHHHHH-hcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999877777 477777666665444 445899999999999543
No 15
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.1e-17 Score=162.10 Aligned_cols=139 Identities=26% Similarity=0.325 Sum_probs=111.7
Q ss_pred CCccccCCCCCC-ChHHHHH----------HHHHHHHHHh-hCCCCCHHHHHHHHHHHHHhhh---h------hhhhh--
Q 012404 12 TGIFDSDPTVMP-KATELKK----------ELQKLVRLIV-DDVDYRTETIDQARDTLCALKE---L------KTKKR-- 68 (464)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~-- 68 (464)
+.+.-+||.--. ++.+|=+ +-.+|+.||+ |+|+|+.++|.+|.+|+.+..- . .+.++
T Consensus 756 ~~LkVkdP~~Y~FnaK~LL~~~~~VYinl~~es~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E 835 (929)
T COG5113 756 TDLKVKDPEQYGFNAKNLLRRMVMVYINLRSESKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLE 835 (929)
T ss_pred cceeecChhhcCCCHHHHHHHHHHHhhhhcchHHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 445667888776 4444422 2368999998 7899999999999999988431 1 11111
Q ss_pred --h--hhhhhccCCCCCCcccCccchhhccCcccCC-CCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHH
Q 012404 69 --S--LSLKLHETVSCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMI 143 (464)
Q Consensus 69 --~--~~~~~~~~~~~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i 143 (464)
+ ...+++|.+++|++|++|++..+|+|||++| +|.+.||++|..|+.+ +.++||+|.|++.++++||.+||+.|
T Consensus 836 ~~r~~ea~EeED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekI 914 (929)
T COG5113 836 KVRVIEAVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKI 914 (929)
T ss_pred HHHHHHhhhhhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHH
Confidence 1 1234568899999999999999999999999 7899999999999998 68999999999999999999999999
Q ss_pred HHHHHHcC
Q 012404 144 SQWCRSQG 151 (464)
Q Consensus 144 ~~~~~~~~ 151 (464)
-.|.+.++
T Consensus 915 n~f~k~k~ 922 (929)
T COG5113 915 NRFYKCKG 922 (929)
T ss_pred HHHHhccc
Confidence 99876554
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.68 E-value=6.5e-16 Score=159.98 Aligned_cols=279 Identities=22% Similarity=0.219 Sum_probs=220.1
Q ss_pred hHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
.+++.+..|.+. ...|..|...|..++..+.+.+..+.+ .|+|+.|+.+|. +.+.+++.+|+++|.||..+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq-lggI~kLv~Ll~------~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ-LGGIPKLVALLD------HRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-hccHHHHHHHhc------CCcHHHHHHHHHHHHhhhccc
Confidence 467788888654 778889999999999999999999999 999999999999 667899999999999998765
Q ss_pred ---chHHHHhcCCCChHHHHHHHhc-CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc--------C----
Q 012404 252 ---NNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE--------G---- 315 (464)
Q Consensus 252 ---~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--------~---- 315 (464)
+|+..|.+.+ .+|.++++|+. ++.++++..+.+|+||+..|..+..|+.. ++..|..-+-. +
T Consensus 307 ~~~~NKlai~~~~-Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 307 STDSNKLAIKELN-GVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CCcccchhhhhcC-ChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccc
Confidence 3788888775 59999999997 69999999999999999998888777654 34555443311 1
Q ss_pred --CHHHHHHHHHHHHHhcc-CchhhhHHHhc-CcHHHHHHHHcC--------CchHHHHHHHHHHhhCCHH---------
Q 012404 316 --HQSAMKDVASAIFNLCI-THENKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNHR--------- 374 (464)
Q Consensus 316 --~~~~~~~al~aL~~L~~-~~~~~~~iv~~-g~v~~Lv~lL~~--------~~~~~~a~~~L~~L~~~~~--------- 374 (464)
+..+..++..+|.|++. ..+.|.+|.++ |.|..|+-+++. ...+++|+.+|.||+..-+
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~ 464 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQ 464 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhh
Confidence 24678999999999998 56889999876 889999998862 2689999999999985311
Q ss_pred ------------------------HHH-------------H--------HHhcCcHHHHHHHHhccCChhHHHHHHHHHH
Q 012404 375 ------------------------AVE-------------E--------IGDLGGVSCMLRIIRESTCDRNKENCIAILH 409 (464)
Q Consensus 375 ------------------------~~~-------------~--------i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 409 (464)
.++ . +...-+|..-+.+|.....+.+.|+++.+|-
T Consensus 465 ~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQ 544 (717)
T KOG1048|consen 465 VLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQ 544 (717)
T ss_pred HhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHh
Confidence 000 0 0001123333455665556899999999999
Q ss_pred HHhccCh----hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccccc
Q 012404 410 TICLSDR----TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 460 (464)
Q Consensus 410 ~L~~~~~----~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~~ 460 (464)
||+.... ..+..++..+.+.++|++|++.+++.+.+.++.+|+||+....+
T Consensus 545 NltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn 599 (717)
T KOG1048|consen 545 NLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN 599 (717)
T ss_pred hhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh
Confidence 9998764 23334546678999999999999999999999999999876554
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.68 E-value=4e-17 Score=120.96 Aligned_cols=63 Identities=49% Similarity=0.887 Sum_probs=60.5
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHH
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQW 146 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~ 146 (464)
+|.||||+++|+|||++||||+|+|++|.+|+.. +.+||+|+++++.+++++|..+|+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999988 68999999999999999999999999988
No 18
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.4e-16 Score=167.30 Aligned_cols=140 Identities=26% Similarity=0.367 Sum_probs=110.0
Q ss_pred cCCccccCCCCCC--ChHHH--------HH-HHHHHHHHHh-hCCCCCHHHHHHHHHHHHH--hhhhh----hh---h--
Q 012404 11 RTGIFDSDPTVMP--KATEL--------KK-ELQKLVRLIV-DDVDYRTETIDQARDTLCA--LKELK----TK---K-- 67 (464)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~--------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~----~~---~-- 67 (464)
..-..-+||.--- |+..+ +- +...|++||+ |||+|++++|..|..++++ +++.. ++ +
T Consensus 771 ~~~Lkvkdp~~y~fePk~ll~~i~~iYlnl~~~~~F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~~Ie~~s~la~~~ 850 (943)
T KOG2042|consen 771 CSDLKVKDPEKYGFEPKQLLSQLSDIYLNLSSEPSFVEAVAKDGRSYSEELFNHAISILRKRILKSSRQIEEFSELAERV 850 (943)
T ss_pred ccccccCCccccCCChHHHHHHHHHHHHhhccchhHHHHHhccccccCHHHHhhhHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 3444555666554 44433 22 2778999998 7899999999999999944 22210 00 0
Q ss_pred ----hhhhhhhccCCCCCCcccCccchhhccCcccCC-CCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHH
Q 012404 68 ----RSLSLKLHETVSCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREM 142 (464)
Q Consensus 68 ----~~~~~~~~~~~~~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~ 142 (464)
.....++++..++|++|.+|++..+|+|||++| +|++.||+.|++|+.+ +.++||||+||+.+++.||.+||+.
T Consensus 851 ~~~~~~~~~eee~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~k 929 (943)
T KOG2042|consen 851 EATASIDAEEEEELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAK 929 (943)
T ss_pred HHHHHHHHHHHHHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHH
Confidence 112233457788999999999999999999999 8999999999999998 7899999999999999999999999
Q ss_pred HHHHHHHcC
Q 012404 143 ISQWCRSQG 151 (464)
Q Consensus 143 i~~~~~~~~ 151 (464)
|+.|..++.
T Consensus 930 I~~~~~ek~ 938 (943)
T KOG2042|consen 930 IRCWIKEKR 938 (943)
T ss_pred HHHHHHHhh
Confidence 999987653
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.56 E-value=3.7e-13 Score=127.00 Aligned_cols=225 Identities=19% Similarity=0.194 Sum_probs=182.8
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
.+-++.|+.+|.. +.|+.+++.|+.++.+.+..+.++..|.+. |+++.+..+|..+++.++..|+.+|.|++.+
T Consensus 11 ~~~l~~Ll~lL~~-----t~dp~i~e~al~al~n~aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 11 AQELQKLLCLLES-----TEDPFIQEKALIALGNSAAFPFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred HHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccChhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 5778899999985 558999999999999999999999999887 4799999999999999999999999999999
Q ss_pred CcchhhhcccCchHHHHHhcccC--CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHH
Q 012404 293 DSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 368 (464)
Q Consensus 293 ~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~ 368 (464)
.+|+..|-. .++.+++.+.+. +..++..++++|.||+..++.+..+. +.+|.++.+|..+ .++..++.+|.|
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999988744 467777655443 67889999999999998888776664 4799999999866 678899999999
Q ss_pred hhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhh-------------HHHHHHhhc-cHHHHHH
Q 012404 369 LSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK-------------WKAMREEES-THGTISK 434 (464)
Q Consensus 369 L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~-------------~~~~~~~~g-~~~~L~~ 434 (464)
|+.++.....++.+.+...++.++....+......++....||..+-... .-.++.+.+ ..+.|..
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 99999999999999999999999997656778888999999996543211 112232333 5556666
Q ss_pred HhhcCCHHHHHHH
Q 012404 435 LAQDGTARAKRKA 447 (464)
Q Consensus 435 Ll~~g~~~~k~~A 447 (464)
|..+.++++|++.
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 6666777777653
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.53 E-value=4.7e-13 Score=138.96 Aligned_cols=284 Identities=18% Similarity=0.180 Sum_probs=216.0
Q ss_pred hhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCch--hhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHH
Q 012404 169 ADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPS--FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 245 (464)
Q Consensus 169 ~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~--~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 245 (464)
-..+.|+.||..|.+. .+.|..|..+|+||...+.. |+-.|.+ .++|+.++++|+. ..|.++++.+..+|.
T Consensus 272 rqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~-~~Gv~~l~~~Lr~-----t~D~ev~e~iTg~LW 345 (717)
T KOG1048|consen 272 RQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE-LNGVPTLVRLLRH-----TQDDEVRELITGILW 345 (717)
T ss_pred HHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh-cCChHHHHHHHHh-----hcchHHHHHHHHHHh
Confidence 3467899999999654 78999999999999976665 8999999 9999999999995 457899999999999
Q ss_pred ccccCcchHHHHhcCCCChHHHHHHHhcC--------------CHHHHHHHHHHHHHhcc-cCcchhhhcc-cCchHHHH
Q 012404 246 NLSIHDNNKKLVAETPMVIPLLMDALRSG--------------TIETRSNAAAALFTLSA-LDSNKEVIGK-SGALKPLI 309 (464)
Q Consensus 246 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~--------------~~~~~~~aa~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv 309 (464)
||+..|.-+..|+.+ .++.|..-+-.+ ..++..+++.+|.|++. ..+.+..+.+ .|.|..|+
T Consensus 346 NLSS~D~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~ 423 (717)
T KOG1048|consen 346 NLSSNDALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALL 423 (717)
T ss_pred cccchhHHHHHHHHH--HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHH
Confidence 999998877777764 466555443111 13456677777777776 4455666655 46666666
Q ss_pred Hhccc------CC-------------------------------------------------------------------
Q 012404 310 DLLDE------GH------------------------------------------------------------------- 316 (464)
Q Consensus 310 ~lL~~------~~------------------------------------------------------------------- 316 (464)
..++. .+
T Consensus 424 ~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe 503 (717)
T KOG1048|consen 424 FSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPE 503 (717)
T ss_pred HHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcc
Confidence 55431 12
Q ss_pred -----------------------------HHHHHHHHHHHHHhccCch-----hhhHH-HhcCcHHHHHHHHcCC--chH
Q 012404 317 -----------------------------QSAMKDVASAIFNLCITHE-----NKARA-VRDGGVSVILKKIMDG--VHV 359 (464)
Q Consensus 317 -----------------------------~~~~~~al~aL~~L~~~~~-----~~~~i-v~~g~v~~Lv~lL~~~--~~~ 359 (464)
+.+.++++.+|-||+.... .+..+ .+..++|+|+++|..+ .++
T Consensus 504 ~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv 583 (717)
T KOG1048|consen 504 RATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVV 583 (717)
T ss_pred cccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHH
Confidence 3344445555555543321 22233 4567789999999854 789
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCC-----hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHH
Q 012404 360 DELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC-----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK 434 (464)
Q Consensus 360 ~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ 434 (464)
..++.+|.||+.+..++..|. .++++.||+.|..+.. +.+-..++.+|+++...+....+.++. .+.++.|+.
T Consensus 584 ~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~-~~g~~kL~~ 661 (717)
T KOG1048|consen 584 RSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLE-IKGIPKLRL 661 (717)
T ss_pred HHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHh-ccChHHHHH
Confidence 999999999999999999988 6789999999987543 778889999999999999888888885 789999999
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhccccccC
Q 012404 435 LAQDG-TARAKRKATGILERLKRTVNLTH 462 (464)
Q Consensus 435 Ll~~g-~~~~k~~A~~~L~~l~~~~~~~~ 462 (464)
|..+. +++.-+.|+.+|..|-.+..++|
T Consensus 662 I~~s~~S~k~~kaAs~vL~~lW~y~eLh~ 690 (717)
T KOG1048|consen 662 ISKSQHSPKEFKAASSVLDVLWQYKELHF 690 (717)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 87554 77899999999998877766654
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=8.8e-13 Score=124.48 Aligned_cols=190 Identities=19% Similarity=0.244 Sum_probs=166.5
Q ss_pred hhhhHHHHHHhhcCC--chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcc
Q 012404 170 DRDHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 247 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 247 (464)
+.+.++.|+..|+.+ +..++.++.++.+.+. .+.++..|.+ .|+++.+..+|. ++++.+++.|+.+|.|+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~-~Ggi~lI~~lL~------~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRD-LGGISLIGSLLN------DPNPSVREKALNALNNL 81 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHH-cCCHHHHHHHcC------CCChHHHHHHHHHHHhc
Confidence 466789999999643 7789999999999888 8899999999 999999999999 66899999999999999
Q ss_pred ccCcchHHHHhcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHH
Q 012404 248 SIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 325 (464)
Q Consensus 248 s~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 325 (464)
+.+.+|+..|-. .++.+.+.+.+. +.+.+..+.++|.+|+..+++...+. +.++.++.+|.+++..++..+++
T Consensus 82 s~~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 82 SVNDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred CCChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence 999999888753 577777765554 67899999999999999888777774 46999999999999999999999
Q ss_pred HHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCC
Q 012404 326 AIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN 372 (464)
Q Consensus 326 aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~ 372 (464)
+|.||+.++.+...++.+++++.++.++... .....++.++.||..+
T Consensus 157 ~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998754 5678899999999765
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.31 E-value=2.7e-11 Score=131.20 Aligned_cols=226 Identities=20% Similarity=0.155 Sum_probs=182.8
Q ss_pred hhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hHHHHhcCCCCh
Q 012404 186 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVI 264 (464)
Q Consensus 186 ~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i 264 (464)
..+..|..+|.||...+..|+..+....|++..+|..|.+ ...++..-.+.+|+||+=..+ |-+.+...-|-+
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s------~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsV 439 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS------APEELLQVYASVLRNLSWRADSNMKKVLRETGSV 439 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc------ChHHHHHHHHHHHHhccccccccHHHHHHhhhhH
Confidence 4577899999999998888888877658999999999983 345788888899999986654 544444333456
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHHhcccC-cchhhhcc-cCchHHHHHhcccC----CHHHHHHHHHHHHHhccC----
Q 012404 265 PLLMDA-LRSGTIETRSNAAAALFTLSALD-SNKEVIGK-SGALKPLIDLLDEG----HQSAMKDVASAIFNLCIT---- 333 (464)
Q Consensus 265 ~~Lv~l-L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~~----~~~~~~~al~aL~~L~~~---- 333 (464)
..|+.. |+.......+..+.+|+||+.+. +||..|.. .|++.+||.+|.-. .....+.|-.+|.|.++.
T Consensus 440 taLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~ 519 (2195)
T KOG2122|consen 440 TALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC 519 (2195)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence 666654 44556678888999999999974 89999987 69999999999753 457789999999988754
Q ss_pred chhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHH
Q 012404 334 HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 410 (464)
Q Consensus 334 ~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 410 (464)
..-|..+.++..+..|+..|.+. .++.++|++||||+. +++-++.+.+.|+|+.|..++++.+ ...-+-++.+|.|
T Consensus 520 E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh-kMIa~GSaaALrN 598 (2195)
T KOG2122|consen 520 EDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH-KMIAMGSAAALRN 598 (2195)
T ss_pred chHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-hhhhhhHHHHHHH
Confidence 34566667889999999999987 678999999999987 6889999999999999999999765 6777888999999
Q ss_pred HhccChhh
Q 012404 411 ICLSDRTK 418 (464)
Q Consensus 411 L~~~~~~~ 418 (464)
|-.+.+.+
T Consensus 599 Lln~RPAk 606 (2195)
T KOG2122|consen 599 LLNFRPAK 606 (2195)
T ss_pred HhcCCchh
Confidence 98877543
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.29 E-value=1.2e-09 Score=114.34 Aligned_cols=272 Identities=15% Similarity=0.155 Sum_probs=208.5
Q ss_pred HHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHH
Q 012404 177 LLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK 255 (464)
Q Consensus 177 Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 255 (464)
+...|..+ .+....+...|..+.. ....... . .+..+.|...|. ++++.++..++..|.++..+.+...
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~-~~~~~~l--~-~~~~~~L~~gL~------h~~~~Vr~l~l~~l~~~~~~~~~~~ 112 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLS-ALSPDSL--L-PQYQPFLQRGLT------HPSPKVRRLALKQLGRIARHSEGAA 112 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHh-ccCHHHH--H-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 55556544 3333444555555555 2222222 2 457778888888 5678999999999999988887766
Q ss_pred HHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-
Q 012404 256 LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH- 334 (464)
Q Consensus 256 ~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~- 334 (464)
.++...++++.++..|.+++..+...|+.+|.+|+........+...+.+..|..++...+..++..+..++.+++...
T Consensus 113 ~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence 7666678999999999999999999999999999998877777888888999999998878888999999999998766
Q ss_pred hhhhHHHhcCcHHHHHHHHcCCc--hHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChh-----HHHHHHHH
Q 012404 335 ENKARAVRDGGVSVILKKIMDGV--HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR-----NKENCIAI 407 (464)
Q Consensus 335 ~~~~~iv~~g~v~~Lv~lL~~~~--~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-----~~~~A~~~ 407 (464)
+....+.+.|.++.+++.|.+++ ++..|+.+|..|+..+.+...+.+.|+++.|+.++.....+. .--..+..
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 45555567899999999998764 688899999999999999999999999999999998643222 11223355
Q ss_pred HHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccccc
Q 012404 408 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 460 (464)
Q Consensus 408 L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~~ 460 (464)
..+++...+....... ..+++.|..+.+++++..+..|...+-.++.+.+.
T Consensus 273 ~g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred HHHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 5566665544433333 35666777788889999999999999998866543
No 24
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.3e-10 Score=114.16 Aligned_cols=217 Identities=18% Similarity=0.192 Sum_probs=176.4
Q ss_pred hHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC
Q 012404 236 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG 315 (464)
Q Consensus 236 ~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~ 315 (464)
....|+-.|.||+.+-.--..+... ..+.-||+.|...+.+........|..|+..++|+..+++.|.|+.|++++...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrk-niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRK-NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH-hHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 3445677788998877655566655 378889999998899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhcc
Q 012404 316 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES 395 (464)
Q Consensus 316 ~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~ 395 (464)
+++.+...+..|+||+....+|.+|+..|.+|.|..+|.+..-..-|+.+|..++.+.+.+..+....+|+.+.+.+-.+
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988878889999999999999999999999999999888776
Q ss_pred CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHHhcccc
Q 012404 396 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 396 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~-g~~~~k~~A~~~L~~l~~~~~ 459 (464)
...++...-++.-.|||.+..+. +++.+..++..|.+..-. .+... ..++||++.+.+
T Consensus 438 ~~~~vdl~lia~ciNl~lnkRNa--QlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg 496 (791)
T KOG1222|consen 438 TGSEVDLALIALCINLCLNKRNA--QLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEG 496 (791)
T ss_pred CCceecHHHHHHHHHHHhccccc--eEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccc
Confidence 55666666666667888866532 344455677777665433 23322 235666666554
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.24 E-value=3.8e-09 Score=110.49 Aligned_cols=274 Identities=14% Similarity=0.142 Sum_probs=206.6
Q ss_pred hhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 172 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
...+.|...|.++ ...+..+++.|.++...+......+.+ .+.++.++..|. ++|.++.+.|+.+|.+++.+
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~~i~~~L~------~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD-NELLPLIIQCLR------DPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHHHHHHHHc------CCcHHHHHHHHHHHHHHhCC
Confidence 3455666777544 678888999999999866666666777 899999999998 66889999999999999998
Q ss_pred cchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 251 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
+..-..+... +.++.|..++...+..+|..+..++.+++.. ++....+.+.|.++.++..|.++|.-++.+++.+|..
T Consensus 150 ~~~~~~l~~~-~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~ 228 (503)
T PF10508_consen 150 PEGLEQLFDS-NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSE 228 (503)
T ss_pred chhHHHHhCc-chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 8777677665 4688899999888888899999999999875 4666777789999999999999888899999999999
Q ss_pred hccCchhhhHHHhcCcHHHHHHHHcCC---c-----hHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhH
Q 012404 330 LCITHENKARAVRDGGVSVILKKIMDG---V-----HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN 400 (464)
Q Consensus 330 L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~-----~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 400 (464)
|+..+.+..-+.+.|+++.|+.++.+. . ..-..+....+++.. +....... -..+..|..++.+. +...
T Consensus 229 La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~ 306 (503)
T PF10508_consen 229 LAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTI 306 (503)
T ss_pred HHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhH
Confidence 999889999899999999999999743 2 223345666777763 32211111 12334455555544 4888
Q ss_pred HHHHHHHHHHHhccChhhHHHH-HHhhccHH----HHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 401 KENCIAILHTICLSDRTKWKAM-REEESTHG----TISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 401 ~~~A~~~L~~L~~~~~~~~~~~-~~~~g~~~----~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
+..|..+|..|+.....+ ..+ ....+.+. .+.....++..++|-++...|.++-.
T Consensus 307 ~~~A~dtlg~igst~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 307 REVAFDTLGQIGSTVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHHHHHhCCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 899999999999766443 223 22223333 33334566788899999999998843
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.23 E-value=1.6e-10 Score=96.43 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=103.0
Q ss_pred hhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccC-chhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH-
Q 012404 298 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH- 373 (464)
Q Consensus 298 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~-~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~- 373 (464)
.+.+.|+++.|+++|.+++..++..++.+|.+++.. ++.+..+++.|++|.|+++|.++ .++..|+++|.+|+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356789999999999999999999999999999988 67888888999999999999875 78999999999999985
Q ss_pred HHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 374 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 374 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
+.+..+.+.|+++.|++++... +..+++.|+++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 5667778889999999999976 48999999999999873
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.18 E-value=6.2e-10 Score=92.87 Aligned_cols=115 Identities=14% Similarity=0.260 Sum_probs=102.5
Q ss_pred HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccC
Q 012404 339 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 415 (464)
Q Consensus 339 ~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~ 415 (464)
.+++.|+++.|+++|.++ ..+..++.+|.+++.. ++.+..+.+.|+++.+++++.++ ++.++..|+++|++|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 467889999999999976 7889999999999998 88899999999999999999975 5999999999999999987
Q ss_pred hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 416 RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 416 ~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
+.....+. ..|+++.|.++++.++..+++.|.++|.++.
T Consensus 81 ~~~~~~~~-~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVL-EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHH-HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 65444444 5799999999999999999999999999986
No 28
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-10 Score=104.26 Aligned_cols=78 Identities=29% Similarity=0.431 Sum_probs=73.5
Q ss_pred cCCCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcCCC
Q 012404 76 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIE 153 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~~~ 153 (464)
...++|+..+|-|+.++|+|||+.|+|.||+|.-|.+|+..-+..+|+||.+++...++||..+|..|..|.+.+.+.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 557899999999999999999999999999999999999986778999999999999999999999999999988764
No 29
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.09 E-value=4.4e-09 Score=103.57 Aligned_cols=232 Identities=16% Similarity=0.124 Sum_probs=163.0
Q ss_pred CchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHH-HHhc-----CCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 012404 214 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK-LVAE-----TPMVIPLLMDALRSGTIETRSNAAAALF 287 (464)
Q Consensus 214 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~-~i~~-----~~~~i~~Lv~lL~~~~~~~~~~aa~~L~ 287 (464)
+....++.+|+.- +.+.++....+..+..+...+..+. .+.. .+.....+++++.+++..++..|+..|.
T Consensus 55 ~~~~~~l~lL~~~----~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 55 QYASLFLNLLNKL----SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp -------HHHHHH-------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3466677777643 1468889999999888866665433 2222 1124666888888999999999999999
Q ss_pred HhcccCcchhhhcccCchHHHHHhccc----CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHH------cCC-
Q 012404 288 TLSALDSNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI------MDG- 356 (464)
Q Consensus 288 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL------~~~- 356 (464)
.|....+....-...+.++.+++.|.+ .+.+.+..|+.+|.+|...++.|..+.+.|+++.|+.++ .+.
T Consensus 131 ~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 131 SLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp HHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCC
Confidence 998876554444335677888887765 345567999999999999999999999999999999999 222
Q ss_pred --chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh-hHHHHHHhhccHHHHH
Q 012404 357 --VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-KWKAMREEESTHGTIS 433 (464)
Q Consensus 357 --~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~~g~~~~L~ 433 (464)
.++-+++-++|.|+-+++....+...+.|+.|+++++....+++.+-++++|.|+....+. ....++ ..|+.+.+.
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv-~~~~l~~l~ 289 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMV-LCGLLKTLQ 289 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHH-HH-HHHHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHH-HccHHHHHH
Confidence 4677899999999999999999999999999999999876689999999999999998875 334455 567777777
Q ss_pred HHhhcC--CHHHHHHHHHH
Q 012404 434 KLAQDG--TARAKRKATGI 450 (464)
Q Consensus 434 ~Ll~~g--~~~~k~~A~~~ 450 (464)
.|.... ++++.+--..+
T Consensus 290 ~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 290 NLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHSS--SSHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH
Confidence 776543 77776654443
No 30
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=9.1e-09 Score=101.36 Aligned_cols=266 Identities=20% Similarity=0.223 Sum_probs=200.7
Q ss_pred hhHHHHHHhhcC----CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcc
Q 012404 172 DHFLSLLKKMSA----TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 247 (464)
Q Consensus 172 ~~i~~Lv~~Ls~----~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 247 (464)
..+..+-+.++. .....+-|+..|.+++. +-..-..+.. ...+..||..|.. .+.+...-.+..|..|
T Consensus 260 ~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrr-kniV~mLVKaLdr------~n~~Ll~lv~~FLkKL 331 (791)
T KOG1222|consen 260 EEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRR-KNIVAMLVKALDR------SNSSLLTLVIKFLKKL 331 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHH-HhHHHHHHHHHcc------cchHHHHHHHHHHHHh
Confidence 344555555543 23334456677888887 5555556666 7899999999984 3567888888999999
Q ss_pred ccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 248 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 248 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
|..++|+..+... |.+..|+++....+++.+......|+||+....++.++++.|.+|.|+.+|.+++ -...|+..|
T Consensus 332 SIf~eNK~~M~~~-~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~l 408 (791)
T KOG1222|consen 332 SIFDENKIVMEQN-GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNML 408 (791)
T ss_pred hhhccchHHHHhc-cHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhh
Confidence 9999999999876 5899999999999999999999999999999999999999999999999998764 345689999
Q ss_pred HHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHH
Q 012404 328 FNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 404 (464)
Q Consensus 328 ~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 404 (464)
|.++.++..+..+....+|+.+++.+.++ .+....++.--|||-+..+.+.+++-.++..|.+.--... +. .-
T Consensus 409 Yh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~-D~---lL 484 (791)
T KOG1222|consen 409 YHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR-DL---LL 484 (791)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc-ch---HH
Confidence 99999999999888889999999987654 3333333344689988888888888767888876554433 21 34
Q ss_pred HHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCH-HHHHHHHHHHHHHh
Q 012404 405 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA-RAKRKATGILERLK 455 (464)
Q Consensus 405 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~-~~k~~A~~~L~~l~ 455 (464)
..++.+++.+.... +.++ -..++-|..++...++ .---.+.++|.||.
T Consensus 485 mK~vRniSqHeg~t-qn~F--idyvgdLa~i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 485 MKVVRNISQHEGAT-QNMF--IDYVGDLAGIAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred HHHHHHhhhccchH-HHHH--HHHHHHHHHHhhcCchHHHHHHHHHHHhhcc
Confidence 56778888876543 3343 2677888887766543 44556667777664
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.07 E-value=2.9e-08 Score=96.76 Aligned_cols=285 Identities=12% Similarity=0.071 Sum_probs=204.0
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCC-CChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENG-INPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~~~~~~A~~~L~~Ls 248 (464)
.+.++.|.+..+|. .+...+.-++|.|.+.++.++|..+.+ .|+-..+++.|+....+.. .+.+...-+...|.|.+
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~-lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFN-LGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHh-cCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 45677777777665 567778899999999999999999999 9998888888876553111 12355566777888887
Q ss_pred cCcc-hHHHHhcCCCChHHHHHHHhcC--C--------------------------------------------HHHHHH
Q 012404 249 IHDN-NKKLVAETPMVIPLLMDALRSG--T--------------------------------------------IETRSN 281 (464)
Q Consensus 249 ~~~~-~~~~i~~~~~~i~~Lv~lL~~~--~--------------------------------------------~~~~~~ 281 (464)
.+.+ .+.+.++. |+++.|..++--+ + ++.++-
T Consensus 165 l~~~~l~aq~~~~-gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 165 LDSRELRAQVADA-GVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred CCcHHHHHHHHhc-ccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 7664 56777765 5888655444211 1 122222
Q ss_pred HHHHHHHhcccCcchhhhcccCchHHHHHhccc-CC-------HHHHHHHHHHHHHhccCchhhhHHHhcC-cHHHHHHH
Q 012404 282 AAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GH-------QSAMKDVASAIFNLCITHENKARAVRDG-GVSVILKK 352 (464)
Q Consensus 282 aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~-------~~~~~~al~aL~~L~~~~~~~~~iv~~g-~v~~Lv~l 352 (464)
....|...+.++.-+..+.+.|.++-++++++. .+ ....+.++....-|...++....+...+ .+..++.-
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 333444444555556677778999999999876 21 1233445555555666666666666555 67777777
Q ss_pred HcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhc----cCChhHHHHHHHHHHHHhccChhhHHHHHHhh
Q 012404 353 IMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTICLSDRTKWKAMREEE 426 (464)
Q Consensus 353 L~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~ 426 (464)
+.+. +..-.+.-++.|++...++...+++.|.+..|+.++.. +.+-+.+-.++++|+|+.---+++ ..+..+
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk--a~~~~a 401 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK--AHFAPA 401 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch--hhcccc
Confidence 7654 56677788899999999999999999999999987765 223566777999999998865554 334458
Q ss_pred ccHHHHHHHhhcCCHHHHHHHHHHHHHHhcccc
Q 012404 427 STHGTISKLAQDGTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 427 g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~ 459 (464)
|..+.+...+....|++..+-.+.||++...++
T Consensus 402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 999999999999999999999999999987665
No 32
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.97 E-value=2.8e-10 Score=100.60 Aligned_cols=62 Identities=29% Similarity=0.573 Sum_probs=53.9
Q ss_pred cCCCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHc---------------CCCCCCCCcccccCCCCcchH
Q 012404 76 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA---------------GNRTCPRTQQVLSHTILTPNH 137 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~---------------~~~~~P~~~~~l~~~~l~~n~ 137 (464)
...+..++|.||||.+.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+
T Consensus 11 ~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred eeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 44567788999999999999999999999999999999852 135799999999998888875
No 33
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.94 E-value=4.8e-10 Score=74.96 Aligned_cols=39 Identities=36% Similarity=0.807 Sum_probs=30.7
Q ss_pred CccchhhccCcccCCCCccccHHHHHHHHHcCC---CCCCCC
Q 012404 86 CPLSKELMRDPVILASGQTFDRPYIQRWLKAGN---RTCPRT 124 (464)
Q Consensus 86 CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~---~~~P~~ 124 (464)
|||+.++|+|||+++|||+|++++|++|+.... ..||.+
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998633 357764
No 34
>PRK09687 putative lyase; Provisional
Probab=98.90 E-value=1.5e-07 Score=90.89 Aligned_cols=117 Identities=17% Similarity=0.085 Sum_probs=67.7
Q ss_pred chHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHh
Q 012404 304 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD 381 (464)
Q Consensus 304 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~ 381 (464)
+++.|+.+|.++++.++..|+.+|..+.... ..+++.|+.+|.+. .++..|+..|..+- +
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----------~ 221 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRK----------D 221 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccC----------C
Confidence 4555555555555555555555555551111 12444555555543 44555555554421 2
Q ss_pred cCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 012404 382 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILER 453 (464)
Q Consensus 382 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~-~g~~~~k~~A~~~L~~ 453 (464)
.-+++.|++.++.+. .+..|+.+|..+.. ..+++.|..+++ +.+.+++++|.+.|..
T Consensus 222 ~~av~~Li~~L~~~~---~~~~a~~ALg~ig~------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 222 KRVLSVLIKELKKGT---VGDLIIEAAGELGD------------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hhHHHHHHHHHcCCc---hHHHHHHHHHhcCC------------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 245777777777532 45566666665544 135678888886 7788999999988763
No 35
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=2.3e-09 Score=106.30 Aligned_cols=70 Identities=21% Similarity=0.423 Sum_probs=63.7
Q ss_pred CCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHH
Q 012404 79 SCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRS 149 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~ 149 (464)
.+...|+||||.++|.+||++||||+||+.||..|+.. ...||.|+.++....+.+|..|.+.++.|...
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 35668999999999999999999999999999999987 56899999999888999999999999998653
No 36
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.89 E-value=1.9e-07 Score=91.20 Aligned_cols=278 Identities=14% Similarity=0.076 Sum_probs=195.8
Q ss_pred HHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhccccccc--CCCChhhHHHHHHHHHccccCc
Q 012404 175 LSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCE--NGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 175 ~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~--~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
..+++.+.+. .++..+-+-.+..-..+++..+-.+++ .|.+.-++++++..... .++.......++....-+..+|
T Consensus 226 ~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD 304 (604)
T KOG4500|consen 226 FMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD 304 (604)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence 4455656443 344445455555444557888888888 89999999999864321 1112233444555666667788
Q ss_pred chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc-----CCHHHHHHHHHH
Q 012404 252 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-----GHQSAMKDVASA 326 (464)
Q Consensus 252 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~al~a 326 (464)
+.-..+...|.++..+++.+.+.+......++-+|.|++..++++..+++.|.+..|+.+|.. ++.+.+.+++.|
T Consensus 305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA 384 (604)
T KOG4500|consen 305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA 384 (604)
T ss_pred hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 877777766668889999999999999999999999999999999999999999999999854 477889999999
Q ss_pred HHHhccCchhhhHHHhcCcHHHHHHHHcC--CchHHHHHHHHHHhhCCHH-HHHHHHhc-CcHHHHHHHHhccCChhHHH
Q 012404 327 IFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHR-AVEEIGDL-GGVSCMLRIIRESTCDRNKE 402 (464)
Q Consensus 327 L~~L~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~~~~-~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~ 402 (464)
|+||...-.||..+...|++..++..+.. +.++..-++.|..+--..+ ...++.+. ..+..||+--++.+...+.-
T Consensus 385 LRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~g 464 (604)
T KOG4500|consen 385 LRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAG 464 (604)
T ss_pred HHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhh
Confidence 99999999999999999999999998874 5788888888887776644 44455444 34666666666543333444
Q ss_pred HHHHHHHHHhccCh--hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 403 NCIAILHTICLSDR--TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 403 ~A~~~L~~L~~~~~--~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
...+.|.-+-.++. .-...+. ..|++..++.++....-..+..|.-+|..+
T Consensus 465 ESnRll~~lIkHs~~kdv~~tvp-ksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 465 ESNRLLLGLIKHSKYKDVILTVP-KSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred hhhHHHHHHHHhhHhhhhHhhcc-ccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 55556655555532 1112233 457777777776655555555555555443
No 37
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.7e-06 Score=90.21 Aligned_cols=275 Identities=14% Similarity=0.236 Sum_probs=205.5
Q ss_pred hhhHHHHHHhhcCC--chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
.++|+.|++.+.++ .++|+.|+..|-.+++ .+|..++. -+++.|+..|+.. ..|+++...++.++.++.
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga--~Gmk~li~vL~~D----~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA--QGMKPLIQVLQRD----YMDPEIIKYALDTLLILT 91 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH--cccHHHHHHHhhc----cCCHHHHHHHHHHHHHHH
Confidence 56899999999655 7899999999999998 47888776 5789999999865 458999999999999997
Q ss_pred cCcc-------h----------HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC--cchhh-hcccCchHHH
Q 012404 249 IHDN-------N----------KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEV-IGKSGALKPL 308 (464)
Q Consensus 249 ~~~~-------~----------~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~-i~~~g~i~~L 308 (464)
.+++ . ...+....+.|..|+..+...+..+|..+...|.+|.... +.+.. +...-+|..|
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 6653 1 2355566678999999999999999999999999987754 33444 4456789999
Q ss_pred HHhcccCCHHHHHHHHHHHHHhccCchhhhHHHh-cCcHHHHHHHHcCC------chHHHHHHHHHHhhCC-HHHHHHHH
Q 012404 309 IDLLDEGHQSAMKDVASAIFNLCITHENKARAVR-DGGVSVILKKIMDG------VHVDELLAILAMLSTN-HRAVEEIG 380 (464)
Q Consensus 309 v~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~-~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~-~~~~~~i~ 380 (464)
+.+|.+....++-.++..|..|......-.++|. .++...|+.++... -+.+.|+.+|-||-++ ..++.-+.
T Consensus 172 mdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 172 MDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR 251 (970)
T ss_pred HHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence 9999988777888999999999998876666664 68999999999732 4788999999999996 56888888
Q ss_pred hcCcHHHHHHHHhcc---C------ChhHHH---HHHHHHHHHhccC-----hhhHHHHHHhhccHHHHHHHh-hcCCH-
Q 012404 381 DLGGVSCMLRIIRES---T------CDRNKE---NCIAILHTICLSD-----RTKWKAMREEESTHGTISKLA-QDGTA- 441 (464)
Q Consensus 381 ~~g~i~~Lv~ll~~~---~------~~~~~~---~A~~~L~~L~~~~-----~~~~~~~~~~~g~~~~L~~Ll-~~g~~- 441 (464)
+.+.|+.|.++|... + ++.-.. .|+.++..+..-. ...++.++...+++..|..++ +.|-+
T Consensus 252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 888999999888642 1 011111 2444444443321 133334555678888888765 55533
Q ss_pred HHHHHHHHHHHHH
Q 012404 442 RAKRKATGILERL 454 (464)
Q Consensus 442 ~~k~~A~~~L~~l 454 (464)
.+..-+.-.+.++
T Consensus 332 dIltesiitvAev 344 (970)
T KOG0946|consen 332 DILTESIITVAEV 344 (970)
T ss_pred hHHHHHHHHHHHH
Confidence 3666555555544
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.71 E-value=4.3e-06 Score=84.40 Aligned_cols=272 Identities=12% Similarity=0.047 Sum_probs=186.4
Q ss_pred HHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcch
Q 012404 175 LSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 253 (464)
Q Consensus 175 ~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~ 253 (464)
..++..|..+ .-.+..+...|..+...+......... .-.++.|...|++. .+...+.-++..|..|-..+..
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l-~~~~~~l~~~l~~~-----~~~~~~~~~v~~L~~LL~~~~~ 177 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDL-DYYFNWLKEQLNNI-----TNNDYVQTAARCLQMLLRVDEY 177 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHH-HHHHHHHHHHhhcc-----CCcchHHHHHHHHHHHhCCchH
Confidence 3455555433 445666667676665422221110000 01223444555432 2467778888999999999999
Q ss_pred HHHHhcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC-CHHHHHHHHHHHHHh
Q 012404 254 KKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNL 330 (464)
Q Consensus 254 ~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L 330 (464)
|..+...+ +++.|+.+|+.. +.+.+-.++-+++-|+..++........+.|+.|+++++.. ..++.+-++.+|.||
T Consensus 178 R~~f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 178 RFAFVLAD-GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHHHHHcc-CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99998776 689999999864 56889999999999999887667777789999999999875 668999999999999
Q ss_pred ccCc-------hhhhHHHhcCcHHHHHHHHcCC----chHHH-------HHHHHHHhhCC--------------------
Q 012404 331 CITH-------ENKARAVRDGGVSVILKKIMDG----VHVDE-------LLAILAMLSTN-------------------- 372 (464)
Q Consensus 331 ~~~~-------~~~~~iv~~g~v~~Lv~lL~~~----~~~~~-------a~~~L~~L~~~-------------------- 372 (464)
.... .....|++.|+++.+-.+...+ ++.+. --.-+..+++.
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s 336 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS 336 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence 8753 2345567776655444433321 22211 11222223321
Q ss_pred ----HHHHHHHHhcC--cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHH
Q 012404 373 ----HRAVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK 446 (464)
Q Consensus 373 ----~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~ 446 (464)
.|+...+.+.+ .+..|+++|..++++.+..-|+.=+..++..-|.. +.++...|+-..+.+|+.+.++.++..
T Consensus 337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-r~i~~~lg~K~~vM~Lm~h~d~~Vr~e 415 (429)
T cd00256 337 EKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-KDVVEQLGGKQRVMRLLNHEDPNVRYE 415 (429)
T ss_pred chHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-HHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence 34445555554 37889999976656777788888899999887643 567777899999999999999999999
Q ss_pred HHHHHHHH
Q 012404 447 ATGILERL 454 (464)
Q Consensus 447 A~~~L~~l 454 (464)
|...++.+
T Consensus 416 AL~avQkl 423 (429)
T cd00256 416 ALLAVQKL 423 (429)
T ss_pred HHHHHHHH
Confidence 99988865
No 39
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.69 E-value=4.5e-09 Score=75.00 Aligned_cols=43 Identities=30% Similarity=0.757 Sum_probs=31.1
Q ss_pred cccCccchhhccCcccC-CCCccccHHHHHHHHHc-CCCCCCCCc
Q 012404 83 EFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKA-GNRTCPRTQ 125 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~-~~~~~P~~~ 125 (464)
.|+||||+..|+|||.- .|||+|+|+.|.+|+.. +...||+.+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 68999999999999985 69999999999999943 345799864
No 40
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-06 Score=84.05 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHH
Q 012404 275 TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKI 353 (464)
Q Consensus 275 ~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL 353 (464)
+.+-+..|..-|..++.+-+|...+...|+...|+..+.+.+..+++.|+++|...+.++ ..+..+.+.|+.+.|+..+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 678899999999999988899999999999999999999999999999999999999876 5677778999999999999
Q ss_pred cCC---chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhcc-CChhHHHHHHHHHHHHhccChhhHHHHHHhhcc
Q 012404 354 MDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEEST 428 (464)
Q Consensus 354 ~~~---~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~ 428 (464)
... ..+.+|+.+++.|-.+ +.+...+...+|...|..++++. .+.+.+..|+-.+..|........ .++...++
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~-d~~~~~~f 254 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE-DIASSLGF 254 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh-hHHHHhhh
Confidence 854 5678899999999986 67999999999999999999973 568999999999999998776553 35556888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 012404 429 HGTISKLAQDGTARAKRKATGILE 452 (464)
Q Consensus 429 ~~~L~~Ll~~g~~~~k~~A~~~L~ 452 (464)
...+..+....+..+++.|...+-
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l 278 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALL 278 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHH
Confidence 899999988888888777766543
No 41
>PRK09687 putative lyase; Provisional
Probab=98.66 E-value=8.9e-07 Score=85.49 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=49.4
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHH
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 422 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 422 (464)
+++.|+.+|.++ .++..|+.+|..+....+ .+++.|+.++... +..++..|+++|..+..
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~--------- 221 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDK-NEEIRIEAIIGLALRKD--------- 221 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCC-ChHHHHHHHHHHHccCC---------
Confidence 455566655543 455555555555522111 2345566666644 36677777777654211
Q ss_pred HHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 423 REEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 423 ~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
..+++.|++.++++. +...|..+|-.+..
T Consensus 222 ---~~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 222 ---KRVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred ---hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 245667777777766 44566666666543
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.66 E-value=4e-07 Score=89.71 Aligned_cols=211 Identities=20% Similarity=0.154 Sum_probs=151.5
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHhhcCchhhhhhhhcC-----CchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 176 SLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESH-----DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 176 ~Lv~~Ls~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~-----g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
.++..+++..+.....+..+..+..+++.....+.... .....++.++. ..|.-++..|+..|..+...
T Consensus 62 ~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~------~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 62 NLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD------RNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-------SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc------CCCHHHHHHHHHHHHHHHHc
Confidence 44444434466677788888888887775555444311 25677777777 45788999999999998666
Q ss_pred cchHHHHhcCCCChHHHHHHHhc----CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc------ccC-CHHH
Q 012404 251 DNNKKLVAETPMVIPLLMDALRS----GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL------DEG-HQSA 319 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL~~----~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL------~~~-~~~~ 319 (464)
.+.+..... .+.++.++++|++ .+.+.+..++.+|.+|...+..|..+.+.|+++.|+.+| ... +.+.
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 553332211 1367778888775 345567889999999999999999999999999999999 222 6688
Q ss_pred HHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHH--HHHHHHhcCcHHHHHHHHh
Q 012404 320 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHR--AVEEIGDLGGVSCMLRIIR 393 (464)
Q Consensus 320 ~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~ll~ 393 (464)
+-.++-++|.|+.+++....+...+.||.|+++++.. .+..-++++|.||...+. ....|+..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8999999999999999999999999999999999853 788899999999999755 8888888876555544444
No 43
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.8e-06 Score=83.34 Aligned_cols=183 Identities=17% Similarity=0.179 Sum_probs=147.5
Q ss_pred CCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHH
Q 012404 231 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLI 309 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv 309 (464)
+.+.+.++.|..-|..+..+=+|...+...||..+ ++..+++++..+|..|+++|...+.+. .....+.+.|+.+.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~-ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVP-LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHH-HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 44678888888888888777788888888765444 666999999999999999999999875 5677888999999999
Q ss_pred HhcccC-CHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC----chHHHHHHHHHHhhCCH-HHHHHHHhc
Q 012404 310 DLLDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTNH-RAVEEIGDL 382 (464)
Q Consensus 310 ~lL~~~-~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~~-~~~~~i~~~ 382 (464)
..|.++ +..++..|+.|+++|-.+. .+...+...++...|...|.++ ..+.+++..+..|.... .....+...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999876 5567799999999999877 5788888888899999999874 57888999999998863 444555566
Q ss_pred CcHHHHHHHHhccCChhHHHHHHHHHHHHhccC
Q 012404 383 GGVSCMLRIIRESTCDRNKENCIAILHTICLSD 415 (464)
Q Consensus 383 g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~ 415 (464)
|....++.+..... ....++|+.++..+...-
T Consensus 253 ~f~~~~~~l~~~l~-~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 253 GFQRVLENLISSLD-FEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhhHHHHHHhhccc-hhhhHHHHHHHHHHHHHH
Confidence 76666667766553 788899888887665543
No 44
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.57 E-value=4e-08 Score=64.82 Aligned_cols=38 Identities=34% Similarity=0.850 Sum_probs=33.2
Q ss_pred CccchhhccCc-ccCCCCccccHHHHHHHHHcCCCCCCCC
Q 012404 86 CPLSKELMRDP-VILASGQTFDRPYIQRWLKAGNRTCPRT 124 (464)
Q Consensus 86 CPi~~~~m~dP-v~~~~g~~~~r~~I~~~~~~~~~~~P~~ 124 (464)
|||+.+.+.|| +++++||+|++++|++|+.. +..||++
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 6889975
No 45
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.51 E-value=5.3e-08 Score=65.06 Aligned_cols=31 Identities=32% Similarity=0.738 Sum_probs=22.2
Q ss_pred CccchhhccC----cccCCCCccccHHHHHHHHHcC
Q 012404 86 CPLSKELMRD----PVILASGQTFDRPYIQRWLKAG 117 (464)
Q Consensus 86 CPi~~~~m~d----Pv~~~~g~~~~r~~I~~~~~~~ 117 (464)
||||.+ |.+ |++++|||+|+|.+|++++..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 999999 999 9999999999999999999864
No 46
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.51 E-value=1.3e-05 Score=89.94 Aligned_cols=223 Identities=17% Similarity=0.088 Sum_probs=130.3
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
...++.|++.|.+. +.+|..|+..|..+.. .++++.|+..|+ +.++.++..|+.+|..+..
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~------D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALG------DGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHc------CCCHHHHHHHHHHHHHHHh
Confidence 34566777777544 6677777777776542 467788888887 5678888888888866521
Q ss_pred CcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 250 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
.. ...+.|...|.+.++.+|..++.+|..+.. +....|+..|.+.++.++..|+.+|..
T Consensus 682 ~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~ 740 (897)
T PRK13800 682 VL----------PPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVS 740 (897)
T ss_pred cc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 11 123456667777777777777777666531 112344555555555566556555554
Q ss_pred hccC---------c--hhhhHHH---------hcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHH
Q 012404 330 LCIT---------H--ENKARAV---------RDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSC 387 (464)
Q Consensus 330 L~~~---------~--~~~~~iv---------~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~ 387 (464)
+-.. + +.|..++ ....++.|..++.++ .++..|+.+|..+...+ ..+..
T Consensus 741 ~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~ 811 (897)
T PRK13800 741 VDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAA 811 (897)
T ss_pred ccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHH
Confidence 3100 0 0111100 011245566666544 45555666655553221 11245
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 388 MLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 388 Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
++..+.+. +..++..|+.+|..+.. ...++.|..++.+.+..++..|...|..+
T Consensus 812 l~~aL~d~-d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 812 ATAALRAS-AWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHhcCC-ChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 66777654 47788888888876542 12336677777777777777777777665
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.49 E-value=4.4e-05 Score=77.17 Aligned_cols=236 Identities=15% Similarity=0.101 Sum_probs=166.1
Q ss_pred CchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHH-HHhcC----CCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 012404 214 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK-LVAET----PMVIPLLMDALRSGTIETRSNAAAALFT 288 (464)
Q Consensus 214 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~-~i~~~----~~~i~~Lv~lL~~~~~~~~~~aa~~L~~ 288 (464)
..+..++.+|+. ....++.+..+..+..|-..++.+. .+.+. +.....++.+|..++.-+...++..|..
T Consensus 53 ~y~~~~l~ll~~-----~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 53 QYVKTFVNLLSQ-----IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence 466677777774 3357788888888777766665433 33332 3455667788988888888889888888
Q ss_pred hcccCcch-hhhcccCchHHHHHhcccC-CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC----chHHHH
Q 012404 289 LSALDSNK-EVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDEL 362 (464)
Q Consensus 289 Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~----~~~~~a 362 (464)
|....... ......-.+.-|...|++. +...+..|+.+|..|...++.|..+.+.++++.|+.+|+.. ..+-++
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 87643221 1110011233455556554 46778889999999999999999999999999999999852 466779
Q ss_pred HHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh-----hhHHHHHHhhccHHHHHHHhh
Q 012404 363 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-----TKWKAMREEESTHGTISKLAQ 437 (464)
Q Consensus 363 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~-----~~~~~~~~~~g~~~~L~~Ll~ 437 (464)
+-++|.|+-+++....+...|.|+.|+++++...-+++.+-++.+|.||...+. ..+...+...|+...+..|..
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~ 287 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ 287 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence 999999999998888787889999999999986557888899999999998541 122233334577776666664
Q ss_pred cC--CHHHHHHHHHHHHHH
Q 012404 438 DG--TARAKRKATGILERL 454 (464)
Q Consensus 438 ~g--~~~~k~~A~~~L~~l 454 (464)
.. ++++.+--..+-..|
T Consensus 288 rk~~DedL~edl~~L~e~L 306 (429)
T cd00256 288 RKYDDEDLTDDLKFLTEEL 306 (429)
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 44 666655554444444
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.4e-06 Score=86.19 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=149.3
Q ss_pred ChhhHHHHHHHHHc-cccCcchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHH
Q 012404 233 NPNLQEDVITTLLN-LSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLI 309 (464)
Q Consensus 233 ~~~~~~~A~~~L~~-Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv 309 (464)
|+..+-+|+.-|.. |+.+.+.-...+....++|.|+.+|+.. +.++...|+++|.+|+.. +.....+++.++||.|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 55555555554443 3444432222222224899999999987 799999999999999974 67788889999999998
Q ss_pred Hhccc-CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc--CCchHHHHHHHHHHhhCC--HHHHHHHHhcCc
Q 012404 310 DLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM--DGVHVDELLAILAMLSTN--HRAVEEIGDLGG 384 (464)
Q Consensus 310 ~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~--~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~ 384 (464)
+-|.. .-.++.+.++.||..++..+. ..++++|++...+.+|. +-..+..|+++-.|+|.. ++.-..+.+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ea-- 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEA-- 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHH--
Confidence 76654 577899999999999987664 45788999999999886 337899999999999985 6666666654
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhcc---ChhhHHHHHHhhccHHHHHHHh
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLS---DRTKWKAMREEESTHGTISKLA 436 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~---~~~~~~~~~~~~g~~~~L~~Ll 436 (464)
+|.|..+|+..+ .+.-+.++-++..++.. .+++..++.. .|.+.-.++|+
T Consensus 337 lPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLl 389 (1051)
T KOG0168|consen 337 LPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLL 389 (1051)
T ss_pred HHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHH
Confidence 899999998754 78888888888888764 3456666663 67777666665
No 49
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.6e-05 Score=82.22 Aligned_cols=256 Identities=16% Similarity=0.175 Sum_probs=187.8
Q ss_pred hhHHHHHHhhcC--CchhHHHHHHHHHH-HhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 172 DHFLSLLKKMSA--TLPDQTEAAKELRL-LTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 172 ~~i~~Lv~~Ls~--~~~~~~~a~~~L~~-L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
+.+.+|++.|.. ++..|.+|+..|.. |+..+++.-..+.- .-.+|.|+.+|+.. .+.++.-.|+++|.+|.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~E-----~n~DIMl~AcRaltyl~ 240 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSHE-----HNFDIMLLACRALTYLC 240 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHH
Confidence 467788888843 46778888888875 44434433332222 46899999999842 36899999999999996
Q ss_pred cCc-chHHHHhcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHH
Q 012404 249 IHD-NNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 326 (464)
Q Consensus 249 ~~~-~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 326 (464)
.-= ..-..++.. ++||.|+.-|. -.-.++-+.++.+|-.|+.... ..+.++|++...+..|+=-+..+++.|+.+
T Consensus 241 evlP~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~Alai 317 (1051)
T KOG0168|consen 241 EVLPRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAI 317 (1051)
T ss_pred hhccchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 345555554 68999886554 4578899999999999997553 346688999988888876678899999999
Q ss_pred HHHhccC--chhhhHHHhcCcHHHHHHHHcC--CchHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHHHHHhccC--
Q 012404 327 IFNLCIT--HENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIREST-- 396 (464)
Q Consensus 327 L~~L~~~--~~~~~~iv~~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~-- 396 (464)
..|.|.. .+.-.-+++ ++|.|-.+|+. ....+.++-.+..++. .++--+.+..+|.|....+++....
T Consensus 318 aaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~ 395 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTI 395 (1051)
T ss_pred HHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccc
Confidence 9999965 233333444 89999999984 3677888777777776 3666788999999999888887531
Q ss_pred -ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC
Q 012404 397 -CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG 439 (464)
Q Consensus 397 -~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g 439 (464)
+..+....++.|..+|...+--+..+.+ .++...|..+++..
T Consensus 396 Ls~~~~~~vIrmls~msS~~pl~~~tl~k-~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 396 LSNGTYTGVIRMLSLMSSGSPLLFRTLLK-LDIADTLKRILQGY 438 (1051)
T ss_pred ccccchhHHHHHHHHHccCChHHHHHHHH-hhHHHHHHHHHhcc
Confidence 2455667888888888888766555554 68888888887544
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.41 E-value=4e-05 Score=86.03 Aligned_cols=225 Identities=16% Similarity=0.113 Sum_probs=136.2
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
...++.|+..|+++ ..++..|+..|..+.... ...+.|...|. +.++.++..|+.+|..+..
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----------~~~~~L~~~L~------~~d~~VR~~A~~aL~~~~~ 713 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----------PPAPALRDHLG------SPDPVVRAAALDVLRALRA 713 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----------CchHHHHHHhc------CCCHHHHHHHHHHHHhhcc
Confidence 44567788888654 667777877777664311 11223334444 2344555555544443321
Q ss_pred Ccc-------------hHH----HHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc
Q 012404 250 HDN-------------NKK----LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL 312 (464)
Q Consensus 250 ~~~-------------~~~----~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 312 (464)
.+. -+. .+... +..+.|..++.+.++++|..++.+|..+... ..+.++.|..++
T Consensus 714 ~~~~~l~~~L~D~d~~VR~~Av~aL~~~-~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll 784 (897)
T PRK13800 714 GDAALFAAALGDPDHRVRIEAVRALVSV-DDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALT 784 (897)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHhcc-cCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHh
Confidence 100 000 00000 0123344555555555666555555554331 123367888888
Q ss_pred ccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH
Q 012404 313 DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLR 390 (464)
Q Consensus 313 ~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 390 (464)
.++++.++..|+.+|..+.... .+++.|+..|.++ .++..|+.+|..+. ....++.|+.
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~ 845 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVE 845 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHH
Confidence 8888888888888888773321 1235677778765 57788888887654 2234688999
Q ss_pred HHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012404 391 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 452 (464)
Q Consensus 391 ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~ 452 (464)
+|... +..++..|+.+|..+. .+ ....+.|...+.+.+..+++.|..+|+
T Consensus 846 ~L~D~-~~~VR~~A~~aL~~~~-~~----------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 846 ALTDP-HLDVRKAAVLALTRWP-GD----------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HhcCC-CHHHHHHHHHHHhccC-CC----------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99865 5999999999998761 11 124567778889999999999999886
No 51
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.40 E-value=1.6e-07 Score=88.37 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=60.9
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHH
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCR 148 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~ 148 (464)
-+.|-||.+.|+-|+++|||||||--||..|+.. .+.||.|..++...+|..|+.+.+.|+.|-.
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 4789999999999999999999999999999997 7899999999999999999999999998754
No 52
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.37 E-value=2.4e-07 Score=64.73 Aligned_cols=47 Identities=34% Similarity=0.604 Sum_probs=41.1
Q ss_pred CcccCccchhhccCcccCCCCcc-ccHHHHHHHHHcCCCCCCCCccccc
Q 012404 82 EEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
+++.|+|+++.+.+++++||||. |+..++.+|+.. ...||++|++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 36789999999999999999999 999999999995 789999999875
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=2.3e-05 Score=82.01 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=166.5
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHhccc
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSAL 292 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~ 292 (464)
-|+.|++.+.+ +.=.+-+..|+..|..+|. .+|..++.. ++++|+..|+.. +++....+..++.++...
T Consensus 23 TI~kLcDRves-----sTL~eDRR~A~rgLKa~sr--kYR~~Vga~--Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 23 TIEKLCDRVES-----STLLEDRRDAVRGLKAFSR--KYREEVGAQ--GMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred HHHHHHHHHhh-----ccchhhHHHHHHHHHHHHH--HHHHHHHHc--ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 56677777654 3346788999999988765 567777665 377799999865 799999999999999886
Q ss_pred Cc------c-h----------hh-hcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc--hhhhHHHh-cCcHHHHHH
Q 012404 293 DS------N-K----------EV-IGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH--ENKARAVR-DGGVSVILK 351 (464)
Q Consensus 293 ~~------~-~----------~~-i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~--~~~~~iv~-~g~v~~Lv~ 351 (464)
++ + + .. |-..+-|..|+..+...+-.++..+...|.+|-.+. +.+..+.. .-+|..|+.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 63 1 1 11 223688999999999889999999999999986654 56665554 478999999
Q ss_pred HHcCC--chHHHHHHHHHHhhCCH-HHHHHHHhcCcHHHHHHHHhc-c--CChhHHHHHHHHHHHHhccChhhHHHHHHh
Q 012404 352 KIMDG--VHVDELLAILAMLSTNH-RAVEEIGDLGGVSCMLRIIRE-S--TCDRNKENCIAILHTICLSDRTKWKAMREE 425 (464)
Q Consensus 352 lL~~~--~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~-~--~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~ 425 (464)
+|.+. .++..++-.|..|+.+. ..++.+.-.++...|..++.. | +..-+-+-|+.+|.||-.++..+ +.+++|
T Consensus 174 lL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN-Q~~FrE 252 (970)
T KOG0946|consen 174 LLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN-QNFFRE 252 (970)
T ss_pred HHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch-hhHHhc
Confidence 99875 78888999999999975 455555666889999999986 2 22467889999999999988766 567778
Q ss_pred hccHHHHHHHh
Q 012404 426 ESTHGTISKLA 436 (464)
Q Consensus 426 ~g~~~~L~~Ll 436 (464)
.+.++.|.+|+
T Consensus 253 ~~~i~rL~klL 263 (970)
T KOG0946|consen 253 GSYIPRLLKLL 263 (970)
T ss_pred cccHHHHHhhc
Confidence 99999999875
No 54
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.33 E-value=4.4e-07 Score=84.08 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=43.6
Q ss_pred CCCCCCcccCccchhhccCc--------ccCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 77 TVSCPEEFKCPLSKELMRDP--------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 77 ~~~~p~~f~CPi~~~~m~dP--------v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
..+..++..||||++.+.+| ++.+|||.||+.||.+|+.. ..+||+||.++.
T Consensus 168 ~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 168 LYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred hhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 34456788999999987764 56789999999999999986 689999999865
No 55
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.28 E-value=1.3e-06 Score=85.09 Aligned_cols=51 Identities=27% Similarity=0.514 Sum_probs=47.8
Q ss_pred ccCccchhhccCcccCC-CCccccHHHHHHHHHcCCCCCCCCcccccCCCCcc
Q 012404 84 FKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTP 135 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~ 135 (464)
+.|.|++++-++||+-| +||.|+|+.|+++..+ +++||++++|++.++++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 57999999999999999 9999999999999998 689999999999988876
No 56
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.5e-07 Score=81.88 Aligned_cols=56 Identities=27% Similarity=0.615 Sum_probs=50.8
Q ss_pred CcccCccchhhccCcccCCCCccccHHHHHHHHHc--CCCCCCCCcccccCCCCcchH
Q 012404 82 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA--GNRTCPRTQQVLSHTILTPNH 137 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~--~~~~~P~~~~~l~~~~l~~n~ 137 (464)
..|.|-||.+.-+|||++.|||-||=-||.+|+.. +...||+|+..++.+.++|-+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 47999999999999999999999999999999984 346799999999999999865
No 57
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.24 E-value=8.2e-07 Score=59.25 Aligned_cols=39 Identities=38% Similarity=0.958 Sum_probs=35.2
Q ss_pred CccchhhccCcc-cCCCCccccHHHHHHHHH-cCCCCCCCC
Q 012404 86 CPLSKELMRDPV-ILASGQTFDRPYIQRWLK-AGNRTCPRT 124 (464)
Q Consensus 86 CPi~~~~m~dPv-~~~~g~~~~r~~I~~~~~-~~~~~~P~~ 124 (464)
|||+.+.+.+|+ ++++||+|++.+|.+|+. .+...||.+
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 445678874
No 58
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=9.6e-07 Score=82.11 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=48.2
Q ss_pred CCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCc
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 134 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 134 (464)
.+..+.|-||.+-++||--+||||.||=+||..|+.+ ...||.||+++.+.+++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 3445999999999999999999999999999999998 56799999999887654
No 59
>PF05536 Neurochondrin: Neurochondrin
Probab=98.18 E-value=8.4e-05 Score=78.30 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=134.6
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcc----hhhhcccCchHHHHHhcccC-------CHHHHHHHHHHHHHhc
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDSN----KEVIGKSGALKPLIDLLDEG-------HQSAMKDVASAIFNLC 331 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~----~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~al~aL~~L~ 331 (464)
.+...+.+|+..+.+-|-.+...+.++...++. +..+.++=+++.|-.||+++ ....+.-|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 456678889888877777777788888875532 33455665579999999873 2456778999999999
Q ss_pred cCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHH
Q 012404 332 ITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 408 (464)
Q Consensus 332 ~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L 408 (464)
..++....---.+.||.|++.+... .+...|+.+|..++.+++|++.+.+.|+++.|++++.+ .+...+.|+.+|
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHH
Confidence 9776542222235899999999753 67899999999999999999999999999999999986 378899999999
Q ss_pred HHHhccChhhHHHHHHhh---ccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 409 HTICLSDRTKWKAMREEE---STHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 409 ~~L~~~~~~~~~~~~~~~---g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
.+++.......-. -... ..+..|...........|-.+..+|..+
T Consensus 164 ~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 164 LNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 9998865422111 0011 2334444444443444455555555544
No 60
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.14 E-value=6.1e-07 Score=64.15 Aligned_cols=58 Identities=19% Similarity=0.411 Sum_probs=32.8
Q ss_pred cccCccchhhccCcccC-CCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHH
Q 012404 83 EFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMI 143 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i 143 (464)
-+.|++|.++|++||.+ .|.|+|++.||.+.+.. .||+|..|....++..|..|..+|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 46799999999999965 59999999999886654 399999999999999999888765
No 61
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.14 E-value=0.00022 Score=70.21 Aligned_cols=221 Identities=13% Similarity=0.070 Sum_probs=166.1
Q ss_pred CChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhc--CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHH
Q 012404 232 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS--GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 309 (464)
Q Consensus 232 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv 309 (464)
.+++....|+..|.-+...++.|..++...| +..++..+.+ .+.+.+-...-+++-|+.++.....+...+.|+.|+
T Consensus 169 ~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg-~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~ 247 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLRVDEYRYAFVIADG-VSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLS 247 (442)
T ss_pred CCCchHHHHHHHHHHHhcCcchhheeeecCc-chhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHH
Confidence 4567788889999999999999999998765 5667777733 378899999999999999888788887789999999
Q ss_pred HhcccC-CHHHHHHHHHHHHHhccCc-------hhhhHHHhcCcHHHHHHHHcCC----chH-------HHHHHHHHHhh
Q 012404 310 DLLDEG-HQSAMKDVASAIFNLCITH-------ENKARAVRDGGVSVILKKIMDG----VHV-------DELLAILAMLS 370 (464)
Q Consensus 310 ~lL~~~-~~~~~~~al~aL~~L~~~~-------~~~~~iv~~g~v~~Lv~lL~~~----~~~-------~~a~~~L~~L~ 370 (464)
++++.. ...+.+-.+.++.||+... +....|+..++.+.+-.+.... ++. +.--.-...|+
T Consensus 248 ~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~Ls 327 (442)
T KOG2759|consen 248 DIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLS 327 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 999886 6678899999999999776 2345566666655554444321 222 22222222333
Q ss_pred CC------------------------HHHHHHHHhcC--cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHH
Q 012404 371 TN------------------------HRAVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE 424 (464)
Q Consensus 371 ~~------------------------~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~ 424 (464)
+. .++...+.+.+ .+..|+++|+.+.++..-.-|+.=+......-|+ .+.++.
T Consensus 328 SFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~vv~ 406 (442)
T KOG2759|consen 328 SFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAVVE 406 (442)
T ss_pred cHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHHHH
Confidence 22 23334444333 5788999999877688888888888888888775 367888
Q ss_pred hhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 425 EESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 425 ~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
.-|+-+.+.+|+.+.+++++-.|..+++.+
T Consensus 407 k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 407 KYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 899999999999999999999999988865
No 62
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.12 E-value=1.5e-06 Score=80.25 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=59.2
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHH
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCR 148 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~ 148 (464)
-..|-||.+.++-|++++|||+||--||.+|+.. ++.||+|+.+.....+.-+..++..++.+..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 3689999999999999999999999999999998 7999999999988888888888888888754
No 63
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.11 E-value=0.00042 Score=71.64 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=112.5
Q ss_pred hcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHH
Q 012404 272 RSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVI 349 (464)
Q Consensus 272 ~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~L 349 (464)
...+...+.+|+-.+.+++.. +..+..+-...++.+||+++..++..+...++.+|.||...- .-|..+++.|+|..|
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 344667777777777777653 334444556788999999999888899999999999999754 679999999999999
Q ss_pred HHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHhcCc-HHHHHHHHhccCChhHHHHHHHHHHHHhccChhh
Q 012404 350 LKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGG-VSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 418 (464)
Q Consensus 350 v~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~g~-i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~ 418 (464)
.+++.+. ..+..++++|.++.-+.+ .++....... ...++.+.... +..++|.+..+|+||..+..+-
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcHHH
Confidence 9999865 789999999999998744 3333333333 44456666644 5999999999999999986543
No 64
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.10 E-value=4.4e-06 Score=77.44 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=79.5
Q ss_pred HHHHHhhCCCCCHHHHHH-HHHHHHHhhhhhhhhhhhhhhhccCCCCCCcccCccchhhccCcccCC-CCccccHHHHHH
Q 012404 35 LVRLIVDDVDYRTETIDQ-ARDTLCALKELKTKKRSLSLKLHETVSCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQR 112 (464)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~ 112 (464)
-..||.+++.|....-|. .|+..++-+.....+... ..-...-++| +.||+|+.++++|+-+| |||+||..||+.
T Consensus 228 a~imit~EG~yVv~qpdvqsWe~Yq~r~~a~~~~~Dq-v~k~~~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~eci~~ 304 (427)
T COG5222 228 AAIMITPEGGYVVAQPDVQSWEKYQQRTKAVAEIPDQ-VYKMQPPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDECIGT 304 (427)
T ss_pred cceEEcCCCCeEEeccchHHHHHHHHHHHhhhhCchh-hhccCCCCcc--ccCcchhhhhhCcccCccccchHHHHHHhh
Confidence 344667778886655544 677666544332221111 0011222344 89999999999999986 899999999999
Q ss_pred HHHcCCCCCCCCcc-cccCCCCcchHHHHHHHHHHHHHc
Q 012404 113 WLKAGNRTCPRTQQ-VLSHTILTPNHLIREMISQWCRSQ 150 (464)
Q Consensus 113 ~~~~~~~~~P~~~~-~l~~~~l~~n~~lk~~i~~~~~~~ 150 (464)
.+...+..||.|.. .+-.+.|.|+...+..++.+.+.+
T Consensus 305 al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 305 ALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred hhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 88876889999854 455678999999999999987744
No 65
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.09 E-value=9.3e-06 Score=67.48 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=108.9
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS 294 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 294 (464)
-+..||+-.+. ..+.+.++..++-|.|.+.++-|-..+... .++..++..|...+....+.+.+.|+|+|....
T Consensus 17 Ylq~LV~efq~-----tt~~eakeqv~ANLANFAYDP~Nys~Lrql-~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~ 90 (173)
T KOG4646|consen 17 YLQHLVDEFQT-----TTNIEAKEQVTANLANFAYDPINYSHLRQL-DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT 90 (173)
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHhhccCcchHHHHHHh-hHHHHHHHHhhcccHHHHHHhHHHHHhhccChH
Confidence 34455555543 557899999999999999999887777765 589999999999999999999999999999999
Q ss_pred chhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHH
Q 012404 295 NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILK 351 (464)
Q Consensus 295 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~ 351 (464)
|+..|.++++++.++..++++...+...|+.+|..|+..+ ..+..+....++..+.+
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 9999999999999999999999999999999999999766 45666655444444433
No 66
>PF05536 Neurochondrin: Neurochondrin
Probab=98.09 E-value=0.00021 Score=75.39 Aligned_cols=240 Identities=14% Similarity=0.106 Sum_probs=155.0
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc----hHHHHhcCCCChHHHHHHHhcC-------CHHHHHHHH
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN----NKKLVAETPMVIPLLMDALRSG-------TIETRSNAA 283 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~----~~~~i~~~~~~i~~Lv~lL~~~-------~~~~~~~aa 283 (464)
.+..-+.+|+ +.+.+-+-.++..+.++..+++ .++.+.++=| .+.|-++|+.+ ....+.-|+
T Consensus 6 ~l~~c~~lL~------~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 6 SLEKCLSLLK------SADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred HHHHHHHHhc------cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 3455667777 3343444555666666665544 2334555543 67788888873 355677788
Q ss_pred HHHHHhcccCcchhhhcccCchHHHHHhcccCCH-HHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC-chHHH
Q 012404 284 AALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ-SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDE 361 (464)
Q Consensus 284 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~-~~~~~ 361 (464)
..|..++..++.+..---.+-||.|++.+.+.+. ++...|+.+|..++..++++..+++.|+++.|.+.+.++ ...+.
T Consensus 79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~ 158 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEI 158 (543)
T ss_pred HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHH
Confidence 8888898866544322224669999999988766 999999999999999999999999999999999999875 67899
Q ss_pred HHHHHHHhhCCHHHHHHHHhc----CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhcc----HHHHH
Q 012404 362 LLAILAMLSTNHRAVEEIGDL----GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEEST----HGTIS 433 (464)
Q Consensus 362 a~~~L~~L~~~~~~~~~i~~~----g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~----~~~L~ 433 (464)
|+.+|.+++........--.. ..++.|-..+.... ...+-.++..|..+-...+...........+ ..-|.
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~ 237 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR 237 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence 999999998753321111111 12344444444332 4556677777777766553110011112233 34555
Q ss_pred HHhhcC-CHHHHHHHHHHHHHHhccccccC
Q 012404 434 KLAQDG-TARAKRKATGILERLKRTVNLTH 462 (464)
Q Consensus 434 ~Ll~~g-~~~~k~~A~~~L~~l~~~~~~~~ 462 (464)
.++++. ++.-+..|..+...|-+.-+..|
T Consensus 238 ~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 238 DILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 567776 55566666666666665544333
No 67
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.07 E-value=3.8e-05 Score=63.95 Aligned_cols=152 Identities=13% Similarity=0.180 Sum_probs=117.1
Q ss_pred hcccCchHHHHHhcccC-CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHH
Q 012404 299 IGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRA 375 (464)
Q Consensus 299 i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~ 375 (464)
+.+.|.+..||.=.... +.+.++....-|.|.+-++-|-..+.+..++...++-|... .+++.+++.|+|+|-++.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 33455667777766654 88999999999999999999999999999999999999865 6889999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012404 376 VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 452 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~ 452 (464)
.+.|.++++++.++..+.+. ...+--.|+..|..|+..+.....++.. ..++..+.+...+.+.+.+--|...|.
T Consensus 92 ~~~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~-p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS-PAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHHHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc-HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999988754 3677777999999999887765555553 445555555543433334444444443
No 68
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.06 E-value=7.3e-05 Score=77.11 Aligned_cols=141 Identities=10% Similarity=0.089 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHH
Q 012404 315 GHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLR 390 (464)
Q Consensus 315 ~~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ 390 (464)
.+.....+|+.++.+++..- .-+...-+..+..+||+++.++ .+...++++|+|+.-. ..-+..+.+.|+|..+..
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 36677888888888877543 3455555668899999999877 5677799999999975 788999999999999999
Q ss_pred HHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 391 IIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 391 ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
++.+. +...+..++|+|+++..+..+..+.....--....+..+..+.+..+++.+-.+|||+-.
T Consensus 469 ~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 469 MLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 99865 488999999999999998876654444323445566777788899999999999999954
No 69
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.06 E-value=0.00018 Score=76.10 Aligned_cols=277 Identities=17% Similarity=0.139 Sum_probs=161.7
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCCcccCCccccchhhhhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhc
Q 012404 134 TPNHLIREMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGES 212 (464)
Q Consensus 134 ~~n~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~ 212 (464)
..++.+|+..--++..-...-+. ...-.+..+.+.+.+ ++..+..|++.|.++.. ++.. +
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~------------~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~----~- 113 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPE------------LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMA----E- 113 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHH------------HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHH----H-
T ss_pred CCCHHHHHHHHHHHHHHhhcchh------------HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchh----h-
Confidence 56667777766555543211100 011234556666654 46677788888888774 2222 2
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHh-cc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL-SA 291 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~L-s~ 291 (464)
..++.+..++. +.++-++..|+.++..+...+++ .+... +++.+..+|.+.++.++.+|+.++..+ ..
T Consensus 114 -~l~~~v~~ll~------~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 182 (526)
T PF01602_consen 114 -PLIPDVIKLLS------DPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCN 182 (526)
T ss_dssp -HHHHHHHHHHH------SSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCT
T ss_pred -HHHHHHHHHhc------CCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccC
Confidence 24556777777 55788899999888887654322 11222 477788888888889999998888888 11
Q ss_pred cCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHh
Q 012404 292 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAML 369 (464)
Q Consensus 292 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L 369 (464)
.+... . .-...+..|..++...++-.+...+..|..++........- ...++.+..++.+. .+.-.|+.++..+
T Consensus 183 ~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 183 DDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp HHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 11111 1 11234455555556667777888888888777654322210 34556666666543 5666677777777
Q ss_pred hCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHH
Q 012404 370 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 449 (464)
Q Consensus 370 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~ 449 (464)
...+. .-..+++.|+.++.+. ++..+-.++..|..++...+. .+. .....+..+..+.+..+|.++..
T Consensus 259 ~~~~~-----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~----~v~--~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 259 SPSPE-----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPP----AVF--NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SSSHH-----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHH----HHG--THHHHHHHHHCSSSHHHHHHHHH
T ss_pred hcchH-----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccch----hhh--hhhhhhheecCCCChhHHHHHHH
Confidence 66655 2223466777777743 366777777777777776522 221 11222223333556667777777
Q ss_pred HHHHHhc
Q 012404 450 ILERLKR 456 (464)
Q Consensus 450 ~L~~l~~ 456 (464)
+|..+..
T Consensus 327 lL~~l~~ 333 (526)
T PF01602_consen 327 LLYKLAN 333 (526)
T ss_dssp HHHHH--
T ss_pred HHhhccc
Confidence 7776653
No 70
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.06 E-value=2.1e-06 Score=58.23 Aligned_cols=40 Identities=38% Similarity=0.821 Sum_probs=33.9
Q ss_pred cCccchhhcc---CcccCCCCccccHHHHHHHHHcCCCCCCCCc
Q 012404 85 KCPLSKELMR---DPVILASGQTFDRPYIQRWLKAGNRTCPRTQ 125 (464)
Q Consensus 85 ~CPi~~~~m~---dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~ 125 (464)
.|||+++-|. .++.++|||.|.+++|.+|+.. +.+||++|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999884 4567899999999999999998 57999986
No 71
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.9e-06 Score=82.49 Aligned_cols=68 Identities=31% Similarity=0.619 Sum_probs=57.7
Q ss_pred CCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHc
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQ 150 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~ 150 (464)
..+++.||||.+.|++|+++||||+|||.||..++. ....||.|+. ... .+.+|..+...++.+...+
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 446899999999999999999999999999999998 5678999996 322 7779999998888876544
No 72
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00083 Score=73.67 Aligned_cols=256 Identities=14% Similarity=0.128 Sum_probs=162.8
Q ss_pred HHHHHHHHHHhhcCchh-hhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcch--HHHHhcCCCChH
Q 012404 189 TEAAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN--KKLVAETPMVIP 265 (464)
Q Consensus 189 ~~a~~~L~~L~~~~~~~-r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~--~~~i~~~~~~i~ 265 (464)
..++..|..+....+.. +..+.+ .|..-+.+..+. .-+..++..|+..|..++..... |+.---.+..++
T Consensus 224 ~~~l~~l~El~e~~pk~l~~~l~~---ii~~~l~Ia~n~----~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~ 296 (1075)
T KOG2171|consen 224 KSALEALIELLESEPKLLRPHLSQ---IIQFSLEIAKNK----ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVP 296 (1075)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHH---HHHHHHHHhhcc----cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHH
Confidence 45666777777655553 333332 455555555533 33678999999999998877432 221111123555
Q ss_pred HHHHHHhcCCHH----------------HHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 266 LLMDALRSGTIE----------------TRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 266 ~Lv~lL~~~~~~----------------~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
.++.++.....+ ....|..+|-.|+..-..+..+ .-.++.+-.+|.+.+..-+++|+.+|..
T Consensus 297 ~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 297 VLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL--PPLFEALEAMLQSTEWKERHAALLALSV 374 (1075)
T ss_pred HHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 555555322111 2334445555555432222211 2235556667788888999999999998
Q ss_pred hccCchhhhHHHh---cCcHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHHHHHHhccCChhHHH
Q 012404 330 LCITHENKARAVR---DGGVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKE 402 (464)
Q Consensus 330 L~~~~~~~~~iv~---~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 402 (464)
++... .+... ..+++.++..|.++ .++-.|+.++..++.+ ++..+...+ -.++.|+..+.+..+++++.
T Consensus 375 i~EGc---~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e-~l~~aL~~~ld~~~~~rV~a 450 (1075)
T KOG2171|consen 375 IAEGC---SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE-RLPPALIALLDSTQNVRVQA 450 (1075)
T ss_pred HHccc---HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH-hccHHHHHHhcccCchHHHH
Confidence 87543 22222 14677777777776 6888899999999996 555555443 35778888888876789999
Q ss_pred HHHHHHHHHhccChhh-HHHHHHhhccHH-HHHHHhhcCCHHHHHHHHHHHHHHhcccc
Q 012404 403 NCIAILHTICLSDRTK-WKAMREEESTHG-TISKLAQDGTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 403 ~A~~~L~~L~~~~~~~-~~~~~~~~g~~~-~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~ 459 (464)
+|+.+|.|++...+.. ...-+ .+++. .|..|.+++++.+|+.+...+.-.+...+
T Consensus 451 hAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 451 HAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 9999999999877533 11122 24444 45556799999999999999987766544
No 73
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.03 E-value=0.00033 Score=74.13 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=169.7
Q ss_pred hHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
.....++.++++ ...++-+--.+..+...+++.-.. ++..+..=|. ++++.++..|+.+|.++...+
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l------~~n~l~kdl~------~~n~~~~~lAL~~l~~i~~~~ 110 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL------IINSLQKDLN------SPNPYIRGLALRTLSNIRTPE 110 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH------HHHHHHHHHC------SSSHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH------HHHHHHHhhc------CCCHHHHHHHHhhhhhhcccc
Confidence 355666666543 555555555556666644442211 2334444455 568899999999999987322
Q ss_pred chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHh-
Q 012404 252 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL- 330 (464)
Q Consensus 252 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L- 330 (464)
+.. .+++.+.++|.++++.+|+.|+.++..+...++. .+... .++.|..+|.+.++.++..|+.++..+
T Consensus 111 -----~~~--~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~ 180 (526)
T PF01602_consen 111 -----MAE--PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIK 180 (526)
T ss_dssp -----HHH--HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHH
T ss_pred -----hhh--HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHc
Confidence 222 2577889999999999999999999999875432 22222 689999999989999999999999999
Q ss_pred ccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHH
Q 012404 331 CITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 407 (464)
Q Consensus 331 ~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~ 407 (464)
+..+... . .-...++.|.+++... -.+..++.+|..++.... .... ...++.+..++++. ++.+.-.|+.+
T Consensus 181 ~~~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~ 254 (526)
T PF01602_consen 181 CNDDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRL 254 (526)
T ss_dssp CTHHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cCcchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHH
Confidence 1111111 1 1123344555554443 356778888888887533 2211 44577888888865 47888888888
Q ss_pred HHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 408 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 408 L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
+..+....+ .. ..+++.|.+++.+.++.++--+...|..+....
T Consensus 255 i~~l~~~~~-----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 255 IIKLSPSPE-----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHSSSHH-----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHhhcchH-----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 887666432 33 478889999999889889999999999887654
No 74
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0012 Score=72.54 Aligned_cols=264 Identities=16% Similarity=0.142 Sum_probs=162.1
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhc-CCchhhhhhhccccccc----C----C-CC-hhhHHHHHHHHHccccCcch
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGES-HDAIPQLLSPLSESKCE----N----G-IN-PNLQEDVITTLLNLSIHDNN 253 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~-~g~i~~Lv~lL~~~~~~----~----~-~~-~~~~~~A~~~L~~Ls~~~~~ 253 (464)
...|..|+..|..+++.-+...+..... .-.++.++.++.....+ + + ++ ..--..|..+|-.++.+=..
T Consensus 263 ~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g 342 (1075)
T KOG2171|consen 263 NSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG 342 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh
Confidence 4456677777777777433322222210 23555666665543321 0 0 00 11223455555555544332
Q ss_pred HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc-cCchHHHHHhcccCCHHHHHHHHHHHHHhcc
Q 012404 254 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 254 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 332 (464)
+...- -+.+.+-.+|.+.+..-|.++..+|..++.... +..++. ..+++..+..|.+++|.++..|+.+|..++.
T Consensus 343 ~~v~p---~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 343 KQVLP---PLFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred hhehH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 22111 145566677888899999999888887776431 222322 3577888888999999999999999999998
Q ss_pred Cc-hhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHH--HHHHHHhcCcHHHHHHHHhccCChhHHHHHHH
Q 012404 333 TH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHR--AVEEIGDLGGVSCMLRIIRESTCDRNKENCIA 406 (464)
Q Consensus 333 ~~-~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~ 406 (464)
+- ..-.+-...-++|.|+..+.+. .++.+|+.+|.|.+..-. .-....+ +.+..++.+|..+.++.+++.++.
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHH
Confidence 64 2333333445677888888764 678889999998887522 2222222 445545545544456999999999
Q ss_pred HHHHHhccChhhHHHHHHhhccHHHHHHHhhcCC-HH---HHHHHHHHHHHHh
Q 012404 407 ILHTICLSDRTKWKAMREEESTHGTISKLAQDGT-AR---AKRKATGILERLK 455 (464)
Q Consensus 407 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~-~~---~k~~A~~~L~~l~ 455 (464)
+|..++....+....-. .-.++.|.+.+++.+ .. ++.|...-+..+.
T Consensus 498 aIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 498 AIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 99999987766554444 367888889888775 33 3444444444433
No 75
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.96 E-value=8.4e-06 Score=55.05 Aligned_cols=43 Identities=42% Similarity=0.933 Sum_probs=38.1
Q ss_pred cCccchhhccCcccCC-CCccccHHHHHHHHHcCCCCCCCCccc
Q 012404 85 KCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQV 127 (464)
Q Consensus 85 ~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~ 127 (464)
.|||+.+.+.+|+.++ |||.|++.++..|+..+...||.++.+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998898776 999999999999998766789999875
No 76
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0019 Score=61.30 Aligned_cols=268 Identities=16% Similarity=0.194 Sum_probs=178.3
Q ss_pred HHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 174 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 174 i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
...++..+.+ ++..+..|+..+..++.. ..+.....+...++.+..++.. .++ .+.|+.+|.|++....
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~------~~~--~~~a~~alVnlsq~~~ 74 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD------LDP--AEPAATALVNLSQKEE 74 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC------ccc--ccHHHHHHHHHHhhHH
Confidence 3467777765 467788888888888874 4454444435567778888873 223 6789999999999998
Q ss_pred hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhc---c----cCchHHHHHhcccC-CH-HHHHHH
Q 012404 253 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIG---K----SGALKPLIDLLDEG-HQ-SAMKDV 323 (464)
Q Consensus 253 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~---~----~g~i~~Lv~lL~~~-~~-~~~~~a 323 (464)
-++.+... ++..+++.+.+.....-...+.+|.||+..++....+. . .|.+.......+.+ +. .-....
T Consensus 75 l~~~ll~~--~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~yl 152 (353)
T KOG2973|consen 75 LRKKLLQD--LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYL 152 (353)
T ss_pred HHHHHHHH--HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHH
Confidence 77777765 78888888888766666777889999998875443322 1 56666666666554 32 234566
Q ss_pred HHHHHHhccCchhhhHHHhcCcHHH--HHHHHcCC-ch-HHHHHHHHHHhhCCHHHHHHHHhcC--cHHHHH--------
Q 012404 324 ASAIFNLCITHENKARAVRDGGVSV--ILKKIMDG-VH-VDELLAILAMLSTNHRAVEEIGDLG--GVSCML-------- 389 (464)
Q Consensus 324 l~aL~~L~~~~~~~~~iv~~g~v~~--Lv~lL~~~-~~-~~~a~~~L~~L~~~~~~~~~i~~~g--~i~~Lv-------- 389 (464)
+-.+.||+....+|.-+.....+|. |..+=..+ .+ +...+++|.|.|-.......+...+ ..+.|+
T Consensus 153 A~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 153 APVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccc
Confidence 7788899999999988876654332 22222212 23 3448899999998877777766532 233322
Q ss_pred -------------HHHh----ccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--CHHHHHHHHHH
Q 012404 390 -------------RIIR----ESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGI 450 (464)
Q Consensus 390 -------------~ll~----~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g--~~~~k~~A~~~ 450 (464)
+.+. ...++..+..-+.+|..||...+.+ +.++.-|+.+++..+ +.+ ++.+.+.+-.+
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR--e~lR~kgvYpilREl-hk~e~ded~~~ace~v 309 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR--EVLRSKGVYPILREL-HKWEEDEDIREACEQV 309 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH--HHHHhcCchHHHHHH-hcCCCcHHHHHHHHHH
Confidence 1222 1235778889999999999876544 666655665555554 443 66688887777
Q ss_pred HHHHhc
Q 012404 451 LERLKR 456 (464)
Q Consensus 451 L~~l~~ 456 (464)
...+-+
T Consensus 310 vq~Lv~ 315 (353)
T KOG2973|consen 310 VQMLVR 315 (353)
T ss_pred HHHHHh
Confidence 776654
No 77
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00019 Score=67.89 Aligned_cols=184 Identities=17% Similarity=0.168 Sum_probs=127.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhh-cccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhc
Q 012404 265 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVI-GKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD 343 (464)
Q Consensus 265 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~ 343 (464)
-.++++|.+.++.++..|+.-+.+|+.. ..+... .+.-.++.|.+|+....+ .+.|+.+|.|++...+.+..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 3488999999999999999999998876 223322 234578889999876555 778999999999999999988877
Q ss_pred CcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHH---h----cCcHHHHHHHHhccCChhHH-HHHHHHHHHHhc
Q 012404 344 GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIG---D----LGGVSCMLRIIRESTCDRNK-ENCIAILHTICL 413 (464)
Q Consensus 344 g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~---~----~g~i~~Lv~ll~~~~~~~~~-~~A~~~L~~L~~ 413 (464)
.+..++..+.++ .+.+..+.+|.||++.+....++. . .|.+...+.....+.+...+ ..-+-++.+|+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 788888888876 688889999999999877665542 2 24444444555544333333 446777888888
Q ss_pred cChhhHHHHHHhhccHHHHHHHh---hcCCHHHHHHHHHHHHHHh
Q 012404 414 SDRTKWKAMREEESTHGTISKLA---QDGTARAKRKATGILERLK 455 (464)
Q Consensus 414 ~~~~~~~~~~~~~g~~~~L~~Ll---~~g~~~~k~~A~~~L~~l~ 455 (464)
....+ ..+.+.. .-+..+++ +.++.--+...+++|+|++
T Consensus 162 ~~~gR--~l~~~~k-~~p~~kll~ft~~~s~vRr~GvagtlkN~c 203 (353)
T KOG2973|consen 162 FEAGR--KLLLEPK-RFPDQKLLPFTSEDSQVRRGGVAGTLKNCC 203 (353)
T ss_pred hhhhh--hHhcchh-hhhHhhhhcccccchhhhccchHHHHHhhh
Confidence 76543 3433333 33444443 3233335666788888864
No 78
>PHA02926 zinc finger-like protein; Provisional
Probab=97.92 E-value=6.6e-06 Score=73.80 Aligned_cols=55 Identities=15% Similarity=0.359 Sum_probs=44.2
Q ss_pred ccCCCCCCcccCccchhhccC---------cccCCCCccccHHHHHHHHHcC-----CCCCCCCccccc
Q 012404 75 HETVSCPEEFKCPLSKELMRD---------PVILASGQTFDRPYIQRWLKAG-----NRTCPRTQQVLS 129 (464)
Q Consensus 75 ~~~~~~p~~f~CPi~~~~m~d---------Pv~~~~g~~~~r~~I~~~~~~~-----~~~~P~~~~~l~ 129 (464)
++....+.+..|+||++...+ +++.+|+|+||..||.+|.... ...||+||+++.
T Consensus 162 e~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 162 EDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 355567788999999998754 4677899999999999999752 235999999875
No 79
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.85 E-value=3.4e-05 Score=51.33 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=37.2
Q ss_pred CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 372 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
+++++..+++.|+++.|+.+|.+. ++.++++|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 468899999999999999999965 59999999999999974
No 80
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.81 E-value=1.4e-05 Score=53.21 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=36.8
Q ss_pred CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhcc
Q 012404 293 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 293 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 332 (464)
++++..+++.|+++.|+.+|+++++++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4578889999999999999999999999999999999973
No 81
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.80 E-value=1.9e-05 Score=51.31 Aligned_cols=39 Identities=51% Similarity=1.094 Sum_probs=35.0
Q ss_pred CccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCC
Q 012404 86 CPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRT 124 (464)
Q Consensus 86 CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~ 124 (464)
|||+++..++|+++++||.|+..++..|+..+...||++
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 799999999999999999999999999998556679874
No 82
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.79 E-value=0.0032 Score=63.25 Aligned_cols=265 Identities=14% Similarity=0.133 Sum_probs=171.8
Q ss_pred hhcCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhc
Q 012404 180 KMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAE 259 (464)
Q Consensus 180 ~Ls~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~ 259 (464)
.|.++.+.+..+.+.++.+.. ++..-..+.+ .+.--.++.-|... ..+...+++|+..++.+...++....+-
T Consensus 34 lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~-l~id~~ii~SL~~~----~~~~~ER~QALkliR~~l~~~~~~~~~~- 106 (371)
T PF14664_consen 34 LLSDSKEVRAAGYRILRYLIS-DEESLQILLK-LHIDIFIIRSLDRD----NKNDVEREQALKLIRAFLEIKKGPKEIP- 106 (371)
T ss_pred HCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHH-cCCchhhHhhhccc----CCChHHHHHHHHHHHHHHHhcCCcccCC-
Confidence 345567788888888998888 5555555655 45444455555533 2346678899999888765543333332
Q ss_pred CCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhH
Q 012404 260 TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKAR 339 (464)
Q Consensus 260 ~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~ 339 (464)
.+++..++.+.++.+...+..|..+|..|+..+ -..+...|++..|++.+-++..+..+..+.++..+-..+..|.-
T Consensus 107 -~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~y 183 (371)
T PF14664_consen 107 -RGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKY 183 (371)
T ss_pred -HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhh
Confidence 257888999999999999999999999999865 35666889999999999887667888899999999888887775
Q ss_pred HHhcCcHHHHHHHHcCC--------c---hHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHHHhccCChhHHHHHHH
Q 012404 340 AVRDGGVSVILKKIMDG--------V---HVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIA 406 (464)
Q Consensus 340 iv~~g~v~~Lv~lL~~~--------~---~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~ 406 (464)
+...--+..++.-..+. . ....+..++..+-.+=.|--.+... .++..|+..|+... +.+++..+.
T Consensus 184 l~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ild 262 (371)
T PF14664_consen 184 LRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILD 262 (371)
T ss_pred hcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHH
Confidence 44322244554444321 1 2223444444444332222222222 24566666666442 556666665
Q ss_pred HHHHHhccCh-----------------------------------------------hhH----HHHHHhhccHHHHHHH
Q 012404 407 ILHTICLSDR-----------------------------------------------TKW----KAMREEESTHGTISKL 435 (464)
Q Consensus 407 ~L~~L~~~~~-----------------------------------------------~~~----~~~~~~~g~~~~L~~L 435 (464)
++..+-.-.+ +++ -.++.+.|.++.|+.+
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l 342 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL 342 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 5555431000 011 1233378999999999
Q ss_pred hhcC-CHHHHHHHHHHHHHHh
Q 012404 436 AQDG-TARAKRKATGILERLK 455 (464)
Q Consensus 436 l~~g-~~~~k~~A~~~L~~l~ 455 (464)
.... ++.+.+||.-+|..+-
T Consensus 343 i~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 343 IESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HhcCCCchHHHHHHHHHHHHH
Confidence 8887 7789999999988653
No 83
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.73 E-value=0.0015 Score=65.05 Aligned_cols=239 Identities=13% Similarity=0.171 Sum_probs=161.3
Q ss_pred hhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHH
Q 012404 206 RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAA 284 (464)
Q Consensus 206 r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~ 284 (464)
...|.. .|+++.|+.++..... ...++-++...|-.+. ..+|+..++..+ ...++.+-+.. .++.....+.
T Consensus 173 CD~iR~-~~~lD~Llrmf~aPn~----et~vRve~~rlLEq~~-~aeN~d~va~~~--~~~Il~lAK~~e~~e~aR~~~~ 244 (832)
T KOG3678|consen 173 CDAIRL-DGGLDLLLRMFQAPNL----ETSVRVEAARLLEQIL-VAENRDRVARIG--LGVILNLAKEREPVELARSVAG 244 (832)
T ss_pred hhHhhc-cchHHHHHHHHhCCch----hHHHHHHHHHHHHHHH-hhhhhhHHhhcc--chhhhhhhhhcCcHHHHHHHHH
Confidence 345566 7999999999984321 2244677777776643 345677777653 44445555443 6888888999
Q ss_pred HHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc--hhhhHHHhcCcHHHHHHHHcCC--chH
Q 012404 285 ALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH--ENKARAVRDGGVSVILKKIMDG--VHV 359 (464)
Q Consensus 285 ~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~--~~~~~iv~~g~v~~Lv~lL~~~--~~~ 359 (464)
.|.++-.+. +....++..|++..++--.+..+|.....++.+|.|.+.+. +.+.+|++..+..-|+-+-.+. -.+
T Consensus 245 il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R 324 (832)
T KOG3678|consen 245 ILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLR 324 (832)
T ss_pred HHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHH
Confidence 999998754 66788899999999988888788999999999999988654 7889999887777777766644 467
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCc-------------------------------HHHHHHHHhccCChhHHHHHHHHH
Q 012404 360 DELLAILAMLSTNHRAVEEIGDLGG-------------------------------VSCMLRIIRESTCDRNKENCIAIL 408 (464)
Q Consensus 360 ~~a~~~L~~L~~~~~~~~~i~~~g~-------------------------------i~~Lv~ll~~~~~~~~~~~A~~~L 408 (464)
-+|+-+.+.|+++.|.-.++...|. +..||-+|++ .+.-..++.+.
T Consensus 325 ~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS---~R~EAq~i~AF 401 (832)
T KOG3678|consen 325 LHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDS---NRLEAQCIGAF 401 (832)
T ss_pred HHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhc---chhhhhhhHHH
Confidence 7788888999887665555544442 3334444432 22223334443
Q ss_pred HHHhccCh----hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 409 HTICLSDR----TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 409 ~~L~~~~~----~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
+ +|.... ..--.++.+-|+++.|-++..+.+.-.-.-|..+|+.+.+
T Consensus 402 ~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 402 Y-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred H-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 3 222111 1112355567888888888876666666778888887754
No 84
>PTZ00429 beta-adaptin; Provisional
Probab=97.71 E-value=0.0078 Score=65.61 Aligned_cols=251 Identities=14% Similarity=0.104 Sum_probs=151.9
Q ss_pred HHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 174 FLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 174 i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
+...++.++++ .+.+.-..-.|.+.++.+++.-- =++..|..=+. +.++.++..|+++|.++-..
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal------LaINtl~KDl~------d~Np~IRaLALRtLs~Ir~~-- 135 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL------LAVNTFLQDTT------NSSPVVRALAVRTMMCIRVS-- 135 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH------HHHHHHHHHcC------CCCHHHHHHHHHHHHcCCcH--
Confidence 44555555443 44444444445555553333211 12344544444 66889999999999876432
Q ss_pred hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhcc
Q 012404 253 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 253 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 332 (464)
.+.+ .+++.+.+.|.+.++-+|+.|+-++..+-..+. ..+...|.++.|.++|.+.++.++.+|+.+|..+..
T Consensus 136 ---~i~e--~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 136 ---SVLE--YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred ---HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 2332 246667888889999999999999999876443 345567899999999999999999999999999986
Q ss_pred CchhhhHHHhcCcHHHHHHHHcCC-c-hHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHH
Q 012404 333 THENKARAVRDGGVSVILKKIMDG-V-HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 410 (464)
Q Consensus 333 ~~~~~~~iv~~g~v~~Lv~lL~~~-~-~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 410 (464)
....... ...+.+..|+..|.+. . .+-..+.+|... .|...... ...+..+...+++. ++.+.-.|+.++..
T Consensus 209 ~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~ 282 (746)
T PTZ00429 209 YGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVAN 282 (746)
T ss_pred hCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 5433322 2234555666666532 2 233444444332 12222221 13466677777765 47888888888888
Q ss_pred HhccC-hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 411 ICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 411 L~~~~-~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
+.... ++..+.+. .....+++.|+ ++++.+|--+..-+..+
T Consensus 283 l~~~~~~~~~~~~~--~rl~~pLv~L~-ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 283 LASRCSQELIERCT--VRVNTALLTLS-RRDAETQYIVCKNIHAL 324 (746)
T ss_pred hcCcCCHHHHHHHH--HHHHHHHHHhh-CCCccHHHHHHHHHHHH
Confidence 87643 22222222 12335566663 45566666666555444
No 85
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.68 E-value=6.2e-05 Score=72.00 Aligned_cols=51 Identities=22% Similarity=0.502 Sum_probs=41.9
Q ss_pred CcccCccchhh-ccCcc---cC-CCCccccHHHHHHHHHcCCCCCCCCcccccCCC
Q 012404 82 EEFKCPLSKEL-MRDPV---IL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 132 (464)
Q Consensus 82 ~~f~CPi~~~~-m~dPv---~~-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 132 (464)
++..||+|+.- ...|- ++ +|||+||++||.++|..+...||.|+.++....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 56789999973 55664 33 699999999999998877789999999987665
No 86
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.67 E-value=0.0058 Score=61.39 Aligned_cols=258 Identities=13% Similarity=0.111 Sum_probs=171.9
Q ss_pred HHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcC
Q 012404 195 LRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG 274 (464)
Q Consensus 195 L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~ 274 (464)
|..+-+.++..+..+.- ....+.+..++- +++.+++..+.++++.+..+.+.-..+...+ .--.++.-|...
T Consensus 7 Lv~l~~~~p~l~~~~~~-~~~~~~i~~~lL------~~~~~vraa~yRilRy~i~d~~~l~~~~~l~-id~~ii~SL~~~ 78 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVL-SFFGERIQCMLL------SDSKEVRAAGYRILRYLISDEESLQILLKLH-IDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHhCchhhhhhhH-HHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcC-CchhhHhhhccc
Confidence 44444445544444332 223344443332 2347899999999999988888777777654 333445555443
Q ss_pred --CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHH
Q 012404 275 --TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKK 352 (464)
Q Consensus 275 --~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~l 352 (464)
+..-|++|...+..+.....+...+ ..|++..++.+....++..+..|+.+|..|+..+. ..++.+|++..|++.
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRA 155 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHH
Confidence 5778999999999888765433333 56889999999998888999999999999987643 234578999999999
Q ss_pred HcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhcc------CCh--hHHHHHHHHHHHHhccChhhHHHH
Q 012404 353 IMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES------TCD--RNKENCIAILHTICLSDRTKWKAM 422 (464)
Q Consensus 353 L~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~------~~~--~~~~~A~~~L~~L~~~~~~~~~~~ 422 (464)
+.++ ...+..+.++..+-.+|..|+.+...--+..++.-+... ... ..-..+..++..+-...+.-.--.
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 9876 677788999999999999998775432245554433321 111 123445555555555554321111
Q ss_pred HHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccccccCC
Q 012404 423 REEESTHGTISKLAQDGTARAKRKATGILERLKRTVNLTHT 463 (464)
Q Consensus 423 ~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~~~~~ 463 (464)
......+..|+..++...+++++....++--+-+.+...|.
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~ 276 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWT 276 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcc
Confidence 11124667788888888888999888888877777666654
No 87
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.65 E-value=0.0081 Score=61.10 Aligned_cols=57 Identities=4% Similarity=-0.010 Sum_probs=31.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
+..|..+++. +.++..++.+|..+.. ...++.|+.++.. +.+++.|...++.+...+
T Consensus 242 ~~~L~~ll~d---~~vr~~a~~AlG~lg~------------p~av~~L~~~l~d--~~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 242 QAWLRELLQA---AATRREALRAVGLVGD------------VEAAPWCLEAMRE--PPWARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHhcC---hhhHHHHHHHHHHcCC------------cchHHHHHHHhcC--cHHHHHHHHHHHHhhCCC
Confidence 4444455542 2356666666654322 2345555555543 338888888888776543
No 88
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.8e-05 Score=67.34 Aligned_cols=51 Identities=24% Similarity=0.538 Sum_probs=42.8
Q ss_pred cccCccchhhccCc--ccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCc
Q 012404 83 EFKCPLSKELMRDP--VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 134 (464)
Q Consensus 83 ~f~CPi~~~~m~dP--v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 134 (464)
-|.||||++-...- |-+.|||.||+.||+..+.. ...||.|+..++..++.
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence 38999999998764 45679999999999999998 57899999877766544
No 89
>PTZ00429 beta-adaptin; Provisional
Probab=97.57 E-value=0.014 Score=63.60 Aligned_cols=251 Identities=11% Similarity=0.054 Sum_probs=157.3
Q ss_pred hhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
+|-+.+|-..|.+ +...+.++++.+..........- ...+-.+.++. +.|.+.+.-....|.+.+.
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS-------~LF~dVvk~~~------S~d~elKKLvYLYL~~ya~ 97 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS-------YLFVDVVKLAP------STDLELKKLVYLYVLSTAR 97 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHhC------CCCHHHHHHHHHHHHHHcc
Confidence 3445667777754 35667788886655443233332 23344556666 5577888877777777765
Q ss_pred CcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 250 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
.......+ ++..+.+=+.+.++..|..|.++|.++-... +. .-.++.+.+.|.+.++-+++.|+.++..
T Consensus 98 ~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~-e~l~~~lkk~L~D~~pYVRKtAalai~K 166 (746)
T PTZ00429 98 LQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VL-EYTLEPLRRAVADPDPYVRKTAAMGLGK 166 (746)
T ss_pred cChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44332222 3566777788889999999988888765421 11 1235667778888899999999999999
Q ss_pred hccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHH
Q 012404 330 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 407 (464)
Q Consensus 330 L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~ 407 (464)
|-.... ..+.+.|.++.|.++|.+. .+..+|+.+|..++...... .-...+.+..|+..+.. .++..|-..+.+
T Consensus 167 ly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e-~~EW~Qi~IL~l 242 (746)
T PTZ00429 167 LFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPE-CNEWGQLYILEL 242 (746)
T ss_pred HHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhc-CChHHHHHHHHH
Confidence 865433 2234567889999999865 78899999999998643222 11233446667777764 347777766666
Q ss_pred HHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 408 LHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 408 L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
|.. ..|..-... ...+..+...+++.++.+.-.|..++-.+.
T Consensus 243 L~~---y~P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 243 LAA---QRPSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HHh---cCCCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 643 323211111 134445555566666666666666555443
No 90
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.016 Score=63.08 Aligned_cols=241 Identities=15% Similarity=0.160 Sum_probs=154.5
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCCh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 264 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i 264 (464)
...|.-|+..+..+.. +..+-.-+.. .|.+..|+.+|.+. |..++.++.+|..|+...+..+...+.||.+
T Consensus 1786 ~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~-~~vL~~LL~lLHS~-------PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~ 1856 (2235)
T KOG1789|consen 1786 PKLQILALQVILLATA-NKECVTDLAT-CNVLTTLLTLLHSQ-------PSMRARVLDVLYALSSNGQIGKEALEHGGLM 1856 (2235)
T ss_pred chHHHHHHHHHHHHhc-ccHHHHHHHh-hhHHHHHHHHHhcC-------hHHHHHHHHHHHHHhcCcHHHHHHHhcCchh
Confidence 4566677777777766 5666667777 78889999999853 6789999999999999988777777776544
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhcccC--cchhhhc--c--------------------------------------
Q 012404 265 PLLMDAL-RSGTIETRSNAAAALFTLSALD--SNKEVIG--K-------------------------------------- 301 (464)
Q Consensus 265 ~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~--~-------------------------------------- 301 (464)
- +.+++ .+.+++.|.+++..+..|.... ..+..|. +
T Consensus 1857 y-il~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~ 1935 (2235)
T KOG1789|consen 1857 Y-ILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQ 1935 (2235)
T ss_pred h-hhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHH
Confidence 3 44444 3446777777887777775532 1111110 0
Q ss_pred ------------------------------------------------------------------cCchHHHHHhcccC
Q 012404 302 ------------------------------------------------------------------SGALKPLIDLLDEG 315 (464)
Q Consensus 302 ------------------------------------------------------------------~g~i~~Lv~lL~~~ 315 (464)
.|.++.++.++...
T Consensus 1936 kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~ 2015 (2235)
T KOG1789|consen 1936 KVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRP 2015 (2235)
T ss_pred HHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCC
Confidence 01111111122221
Q ss_pred CH--HHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHc--CCchHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH
Q 012404 316 HQ--SAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIM--DGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLR 390 (464)
Q Consensus 316 ~~--~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 390 (464)
++ .....-..++..|...+ ....++-..|.+|.++..+. +...-..|+.+|..|+.+.-..+++.....+..++.
T Consensus 2016 ~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~ 2095 (2235)
T KOG1789|consen 2016 TPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMK 2095 (2235)
T ss_pred CcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHH
Confidence 11 11111122222333322 22333444578888888775 235567899999999999999999988888888888
Q ss_pred HHhccCChhHHHHHHHHHHHHhccChhhH-HHHHHhhccHHHHHHHhhc
Q 012404 391 IIRESTCDRNKENCIAILHTICLSDRTKW-KAMREEESTHGTISKLAQD 438 (464)
Q Consensus 391 ll~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~~g~~~~L~~Ll~~ 438 (464)
.|+.. ...---|+.+|..+...+.... .+.+ ..|.++.|.+|+..
T Consensus 2096 ~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~L-K~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2096 SMKKQ--PSLMGLAAEALKRLMKRNTGELVAQML-KCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcHHHHHHHhcc
Confidence 88753 3445588999999888765443 3344 48999999999744
No 91
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.52 E-value=0.00049 Score=53.85 Aligned_cols=84 Identities=26% Similarity=0.358 Sum_probs=66.8
Q ss_pred hHHHHHHH-hcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHh
Q 012404 264 IPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR 342 (464)
Q Consensus 264 i~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~ 342 (464)
+|.|++.| +++++.+|..++.+|..+ ....+++.|+.+++++++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57889988 777999999999988822 23356999999999899999999999999872 3
Q ss_pred cCcHHHHHHHHcCC---chHHHHHHHHH
Q 012404 343 DGGVSVILKKIMDG---VHVDELLAILA 367 (464)
Q Consensus 343 ~g~v~~Lv~lL~~~---~~~~~a~~~L~ 367 (464)
..+++.|.+++.++ .++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45899999999864 34677777764
No 92
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.49 E-value=0.0029 Score=63.10 Aligned_cols=235 Identities=12% Similarity=0.064 Sum_probs=154.7
Q ss_pred hhhhHHHHHHhhcCC---chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHc
Q 012404 170 DRDHFLSLLKKMSAT---LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 246 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~~---~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 246 (464)
..+.+..|++++.+. ..++.++.+.|-.+.. .+|++.+.. .| ...++.+-+. .+.++.+...+.+|.+
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~-~~-~~~Il~lAK~-----~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVAR-IG-LGVILNLAKE-----REPVELARSVAGILEH 248 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhh-cc-chhhhhhhhh-----cCcHHHHHHHHHHHHH
Confidence 356777888888543 3457788888777654 568888887 45 4444444332 3457888889999999
Q ss_pred cccCcc-hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC--cchhhhcccCchHHHHHhcccCCHHHHHHH
Q 012404 247 LSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAMKDV 323 (464)
Q Consensus 247 Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 323 (464)
+-++.+ ....++..+ ++..++-..+..++....+++-+|.|.+.+. ..+..+++..+-+-|..|-.+.+.-.+-.|
T Consensus 249 mFKHSeet~~~Lvaa~-~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAG-GLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HhhhhHHHHHHHHhhc-ccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 988876 345556554 6777777777778999999999999998865 556777777666777777666666677888
Q ss_pred HHHHHHhccCchhhhHHHhcCc---HHHH----------------------------HHHHcCCchHHHHHHHHHHhhC-
Q 012404 324 ASAIFNLCITHENKARAVRDGG---VSVI----------------------------LKKIMDGVHVDELLAILAMLST- 371 (464)
Q Consensus 324 l~aL~~L~~~~~~~~~iv~~g~---v~~L----------------------------v~lL~~~~~~~~a~~~L~~L~~- 371 (464)
+.+...|+.+.+.-..+-+.|. |.++ +-+|.+......+++++...+.
T Consensus 328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EA 407 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEA 407 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHH
Confidence 8888888888765444444433 3333 3333333333334555443332
Q ss_pred ---CHHHHHHH-HhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccC
Q 012404 372 ---NHRAVEEI-GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 415 (464)
Q Consensus 372 ---~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~ 415 (464)
...++..+ .+-|+|+.|-++..+. +.....-|..+|..|...-
T Consensus 408 aIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 408 AIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEEV 454 (832)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcccc
Confidence 23344444 4559999999988743 3555556778888776543
No 93
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=3.1e-05 Score=73.97 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=57.2
Q ss_pred CCCcccCccchhhccCcccCC-CCccccHHHHHHHHHcCCCCCCCCccccc-CCCCcchHHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLS-HTILTPNHLIREMISQW 146 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~-~~~l~~n~~lk~~i~~~ 146 (464)
+-.+|.||||.++++-..+++ |+|.||+.||-.-+..++..||.||+.+. ...|.+...+-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 455899999999999999998 99999999999999988899999999874 56777776667777653
No 94
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.051 Score=54.25 Aligned_cols=244 Identities=13% Similarity=0.176 Sum_probs=162.8
Q ss_pred hhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcC-----ch----hhhhhhhcCCchhhhhhhcccccccCCCChhhHHH
Q 012404 170 DRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRM-----PS----FRALFGESHDAIPQLLSPLSESKCENGINPNLQED 239 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~-----~~----~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~ 239 (464)
+.++++.|+..|... ...-...+..|..|+..+ .+ .-..+++ .+.++.|+.-+.+.....-+......+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqnveRLdEsvkeea~gv~~ 201 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQNVERLDESVKEEADGVHN 201 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 456788899999754 344444555566666532 11 2344556 678888887776543111122345567
Q ss_pred HHHHHHccccCcc-hHHHHhcCCCChHHHHHHHhcC-C-HHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhccc-
Q 012404 240 VITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSG-T-IETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDE- 314 (464)
Q Consensus 240 A~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~-~-~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~- 314 (464)
++..+-|+...++ ....+++. |.+.-|+.-+... . ..-+..|...|.-+..+. +++...+...+|..|+.-+.-
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y 280 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence 7888888866554 55666665 5555444433322 2 345667777777777654 588899999999999887632
Q ss_pred --C------CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhhCCHH---HHHHHHhc
Q 012404 315 --G------HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTNHR---AVEEIGDL 382 (464)
Q Consensus 315 --~------~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~~~---~~~~i~~~ 382 (464)
. ..+..++-..+|+.+....+||.+++...++....-+++.. ..+..++.+|..+..+++ +...+++.
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~ 360 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEI 360 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 1 23567888888888888999999999988887766666654 567779999999998754 66778888
Q ss_pred CcHHHHHH-HHhc--------cCChhHHHHHHHHHHHHhccC
Q 012404 383 GGVSCMLR-IIRE--------STCDRNKENCIAILHTICLSD 415 (464)
Q Consensus 383 g~i~~Lv~-ll~~--------~~~~~~~~~A~~~L~~L~~~~ 415 (464)
+|...+.. +++. .+.+..-++.+++|+.+-.+.
T Consensus 361 lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 361 LGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 87777664 4422 222456678888888876644
No 95
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=8.9e-05 Score=68.37 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=45.0
Q ss_pred CcccCccchhhccCcccCCCCccccHHHHHH-HHHcCCCCCCCCcccccCCC
Q 012404 82 EEFKCPLSKELMRDPVILASGQTFDRPYIQR-WLKAGNRTCPRTQQVLSHTI 132 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~-~~~~~~~~~P~~~~~l~~~~ 132 (464)
.+|.|+||.+.+.+|+-+||||.||=.||-. |..+....||.||+...+..
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 5899999999999999999999999999988 88876677999998765543
No 96
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.34 E-value=0.00015 Score=54.91 Aligned_cols=47 Identities=32% Similarity=0.666 Sum_probs=36.2
Q ss_pred CCCCCCcccCccchhhccCc-------------ccCCCCccccHHHHHHHHHcCCCCCCCCc
Q 012404 77 TVSCPEEFKCPLSKELMRDP-------------VILASGQTFDRPYIQRWLKAGNRTCPRTQ 125 (464)
Q Consensus 77 ~~~~p~~f~CPi~~~~m~dP-------------v~~~~g~~~~r~~I~~~~~~~~~~~P~~~ 125 (464)
.+++.++- |+||++.|.|| ++.+|||.|-..||++|+.. +.+||++|
T Consensus 14 ~~~~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 14 SWDIADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp EESSCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred eecCcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 34555554 99999999544 23479999999999999987 56999986
No 97
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.32 E-value=0.00018 Score=48.66 Aligned_cols=40 Identities=20% Similarity=0.470 Sum_probs=33.8
Q ss_pred Cccchhhc---cCcccCCCCccccHHHHHHHHHcCCCCCCCCcc
Q 012404 86 CPLSKELM---RDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQ 126 (464)
Q Consensus 86 CPi~~~~m---~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~ 126 (464)
||++.+.+ ..|++++|||+|+..+|.++. .....||++++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88888888 347899999999999999999 43678999874
No 98
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.31 E-value=0.03 Score=55.59 Aligned_cols=230 Identities=13% Similarity=0.086 Sum_probs=157.8
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcC------CCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET------PMVIPLLMDALRSGTIETRSNAAAALFT 288 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~------~~~i~~Lv~lL~~~~~~~~~~aa~~L~~ 288 (464)
.+..++.+++.- ..++....++..+-.+-..+..+..+... ....+..+.+|..++.-....+.+.|..
T Consensus 66 ~v~~fi~LlS~~-----~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~ 140 (442)
T KOG2759|consen 66 YVKTFINLLSHI-----DKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSK 140 (442)
T ss_pred HHHHHHHHhchh-----hhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHH
Confidence 455666666631 13455555666555554444433333211 1125567888888887777778888888
Q ss_pred hcccCcchhhhcccC-chHHHHHhccc-CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc-CC---chHHHH
Q 012404 289 LSALDSNKEVIGKSG-ALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM-DG---VHVDEL 362 (464)
Q Consensus 289 Ls~~~~~~~~i~~~g-~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~-~~---~~~~~a 362 (464)
++.....+...++.. ....|-..+.+ .+.+...-|+++|-.+...++-|..++...++..|+..+. +. .++-..
T Consensus 141 la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs 220 (442)
T KOG2759|consen 141 LACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQS 220 (442)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence 887665444333322 22334445554 4667888899999999999999999999999999999994 32 567789
Q ss_pred HHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh------hhHHHHHHhhccHHHHHHHh
Q 012404 363 LAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR------TKWKAMREEESTHGTISKLA 436 (464)
Q Consensus 363 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~------~~~~~~~~~~g~~~~L~~Ll 436 (464)
+-+++.|+-++...+.+...+.|+.|.++++.+.-+++.+-.++++.|+....+ ..+..++. .++...+..|.
T Consensus 221 ifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~ 299 (442)
T KOG2759|consen 221 IFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLE 299 (442)
T ss_pred HHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHH
Confidence 999999999998888887778999999999976557777889999999998774 33344553 56666776676
Q ss_pred hcC--CHHHHHHHHHH
Q 012404 437 QDG--TARAKRKATGI 450 (464)
Q Consensus 437 ~~g--~~~~k~~A~~~ 450 (464)
+.+ ++.+..--..+
T Consensus 300 ~rkysDEDL~~di~~L 315 (442)
T KOG2759|consen 300 ERKYSDEDLVDDIEFL 315 (442)
T ss_pred hcCCCcHHHHHHHHHH
Confidence 555 44444433333
No 99
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0061 Score=66.21 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhcc-cCcchhhhcc----cCchHHHHHhccc-CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHH
Q 012404 278 TRSNAAAALFTLSA-LDSNKEVIGK----SGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILK 351 (464)
Q Consensus 278 ~~~~aa~~L~~Ls~-~~~~~~~i~~----~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~ 351 (464)
-..-+..+|.||.. +++....++. -|.++.+...|.. ++++++.-|+.++.-+..+.+.-..++..|++..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34557788999876 4566666664 4788888888876 4889999999999999999998889999999999999
Q ss_pred HHcC-CchHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 352 KIMD-GVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 352 lL~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
+|.+ +..++.++.+|..|+++++...+..++|++.-+..++-...++..+.+|+.+|..|...
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 9986 48999999999999999998888889999999998888777788889999999988764
No 100
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.11 Score=51.89 Aligned_cols=234 Identities=19% Similarity=0.219 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc------h----HHHHh
Q 012404 189 TEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN------N----KKLVA 258 (464)
Q Consensus 189 ~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~------~----~~~i~ 258 (464)
...++.+.-++. .|.....+.+ .++++.|+.+|. .++.++....+..|..|.-.|- . ...++
T Consensus 102 hd~IQ~mhvlAt-~PdLYp~lve-ln~V~slL~LLg------HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv 173 (536)
T KOG2734|consen 102 HDIIQEMHVLAT-MPDLYPILVE-LNAVQSLLELLG------HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV 173 (536)
T ss_pred HHHHHHHHhhhc-ChHHHHHHHH-hccHHHHHHHhc------CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH
Confidence 345666666666 7888878888 899999999999 6677888888888888854331 1 22334
Q ss_pred cCCCChHHHHHHHhcCC------HHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccC--CHHHHHHHHHHHHH
Q 012404 259 ETPMVIPLLMDALRSGT------IETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFN 329 (464)
Q Consensus 259 ~~~~~i~~Lv~lL~~~~------~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL~~ 329 (464)
. +++++.|++-++.=+ .....+....+-|+...+ +....+++.|.+.-|+.-+... -..-+..|...|.-
T Consensus 174 d-g~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLai 252 (536)
T KOG2734|consen 174 D-GQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAI 252 (536)
T ss_pred h-ccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHH
Confidence 3 568888887765322 335566677778887754 5666777777777666644322 22346677777777
Q ss_pred hccCc-hhhhHHHhcCcHHHHHHHHc-----CC------chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCC
Q 012404 330 LCITH-ENKARAVRDGGVSVILKKIM-----DG------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC 397 (464)
Q Consensus 330 L~~~~-~~~~~iv~~g~v~~Lv~lL~-----~~------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 397 (464)
+-.+. +++.......++..|++-+. ++ .+-++-...|+.+...++++..+....|+.-..-+++..
T Consensus 253 llq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K-- 330 (536)
T KOG2734|consen 253 LLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK-- 330 (536)
T ss_pred HhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--
Confidence 76655 58888788899999998774 22 345556666777777899999999888887777777752
Q ss_pred hhHHHHHHHHHHHHhccCh--hhHHHHHHhhccHHHHHH
Q 012404 398 DRNKENCIAILHTICLSDR--TKWKAMREEESTHGTISK 434 (464)
Q Consensus 398 ~~~~~~A~~~L~~L~~~~~--~~~~~~~~~~g~~~~L~~ 434 (464)
...+-.|..+|-....+.+ ..|...+. .++...+.-
T Consensus 331 k~sr~SalkvLd~am~g~~gt~~C~kfVe-~lGLrtiF~ 368 (536)
T KOG2734|consen 331 KVSRGSALKVLDHAMFGPEGTPNCNKFVE-ILGLRTIFP 368 (536)
T ss_pred HHhhhhHHHHHHHHHhCCCchHHHHHHHH-HHhHHHHHH
Confidence 5677789999998888766 56666775 444443333
No 101
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0075 Score=62.74 Aligned_cols=267 Identities=13% Similarity=0.097 Sum_probs=173.5
Q ss_pred hhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhh-----hhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHH
Q 012404 172 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRAL-----FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 245 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~-----i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 245 (464)
..++.|.+.|.+. ...++-|..+|..++.++.+.-.. -.+ -.+|.++.+.+ +.++.++..|+..+-
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~--~mipkfl~f~~------h~spkiRs~A~~cvN 199 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN--IMIPKFLQFFK------HPSPKIRSHAVGCVN 199 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH--HhHHHHHHHHh------CCChhHHHHHHhhhh
Confidence 4577888888665 456778888999988866543221 111 36788888888 567899999998876
Q ss_pred ccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHH
Q 012404 246 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 325 (464)
Q Consensus 246 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 325 (464)
...... +...+..-..++..+-.+-...++++|++.+.+|..|......+..=--.++|+-.+...++.+.++.-.|+.
T Consensus 200 q~i~~~-~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACE 278 (885)
T KOG2023|consen 200 QFIIIQ-TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACE 278 (885)
T ss_pred heeecC-cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHH
Confidence 543332 2222322223666666666677899999999999998876543332222577888888888888889999999
Q ss_pred HHHHhccCchhhhHHHhc--CcHHHHHHHHc-CC----------------------------------------------
Q 012404 326 AIFNLCITHENKARAVRD--GGVSVILKKIM-DG---------------------------------------------- 356 (464)
Q Consensus 326 aL~~L~~~~~~~~~iv~~--g~v~~Lv~lL~-~~---------------------------------------------- 356 (464)
....++..+-.+..+... ..||.|++-|. ++
T Consensus 279 Fwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD 358 (885)
T KOG2023|consen 279 FWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD 358 (885)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence 999999988434333332 56777775432 00
Q ss_pred -----------chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhc---cCChhHHHHHHHHHHHHhccChhhHHHH
Q 012404 357 -----------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE---STCDRNKENCIAILHTICLSDRTKWKAM 422 (464)
Q Consensus 357 -----------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 422 (464)
+++..++++|..|+ .+.....++.++-+++. ...=.+||.++-+|..++.+.- +-+
T Consensus 359 e~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~ 428 (885)
T KOG2023|consen 359 EDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGF 428 (885)
T ss_pred ccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhc
Confidence 11222233333332 22333344454444443 1225788999999999887542 234
Q ss_pred HHhh-ccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 423 REEE-STHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 423 ~~~~-g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+... ..++.|+.++.+..+.++.-.+|.|.+++..
T Consensus 429 ~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 429 VPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred ccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 3211 2677888888998999999999999988764
No 102
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.22 E-value=0.0013 Score=51.40 Aligned_cols=85 Identities=13% Similarity=0.265 Sum_probs=66.4
Q ss_pred hHHHHHhc-ccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHh
Q 012404 305 LKPLIDLL-DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD 381 (464)
Q Consensus 305 i~~Lv~lL-~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~ 381 (464)
|+.|++.| .++++.++..++.+|..+- ...++|.|++++.++ .++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 58899999 6679999999999999441 225699999999866 67888999998772 3
Q ss_pred cCcHHHHHHHHhccCChhHHHHHHHHHH
Q 012404 382 LGGVSCMLRIIRESTCDRNKENCIAILH 409 (464)
Q Consensus 382 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 409 (464)
..+++.|.++++++.+..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4478999999987655667888888873
No 103
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0032 Score=63.92 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=139.9
Q ss_pred HHHHHHccccCcc-hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcc-cCcchhhhcccCchHHHHHhcccCCH
Q 012404 240 VITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQ 317 (464)
Q Consensus 240 A~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~ 317 (464)
++..|..++..-. -|.-+... .+...|+++|+.+...+.--+...++|+.. ....+..+.+.|.|..|+.++.+.+.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~-~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDY-PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHhhHHHHHHHhhcccc-chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3334444444332 24444444 478889999998877777778888999876 45667788899999999999998888
Q ss_pred HHHHHHHHHHHHhccCch--hhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH----HHHHHHHhcC----cH
Q 012404 318 SAMKDVASAIFNLCITHE--NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH----RAVEEIGDLG----GV 385 (464)
Q Consensus 318 ~~~~~al~aL~~L~~~~~--~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~----~~~~~i~~~g----~i 385 (464)
..+.+..|.|++|.-+.. .+.+.+..-++..++++..++ .+++.++.+|.|+..+. +.+..+.... ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 899999999999987653 466667777888999998877 78999999999998842 2233222221 34
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh
Q 012404 386 SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA 436 (464)
Q Consensus 386 ~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll 436 (464)
..|++.++... +-..+..+.+|.+++..+.+....+......+..+..++
T Consensus 568 k~l~~k~e~~n-p~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 568 KRLIDKYEENN-PMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHhcC-chhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 55677777554 666667789999998888766555665555666555554
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.18 E-value=0.026 Score=58.32 Aligned_cols=265 Identities=13% Similarity=0.201 Sum_probs=164.7
Q ss_pred HHHHHHHhhcCchhhhhhhhcCCchhhhhhhcc--c--ccccCCCChhhHHHHHHHHHccccCcc-hHHHHhcCCCChHH
Q 012404 192 AKELRLLTKRMPSFRALFGESHDAIPQLLSPLS--E--SKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 266 (464)
Q Consensus 192 ~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~--~--~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i~~ 266 (464)
+..|+.+++ ++.+...+.. ..++..|+..-. . .......+..+..+|++.|.|+..... .+..++.. +..+.
T Consensus 2 L~~LRiLsR-d~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~ 78 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDL-GLAEK 78 (446)
T ss_pred HHHHHHHcc-Ccccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHc-CcHHH
Confidence 456677777 5555555555 455666655541 0 000114578899999999999988876 45555554 57888
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHHhccc-Ccchhhhcc-cCchHHHHHhccc-----------------CCHHHHHH
Q 012404 267 LMDALRSG-----TIETRSNAAAALFTLSAL-DSNKEVIGK-SGALKPLIDLLDE-----------------GHQSAMKD 322 (464)
Q Consensus 267 Lv~lL~~~-----~~~~~~~aa~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~lL~~-----------------~~~~~~~~ 322 (464)
++..|+.. +.+..-...+.|+-++.. .+.+..+.+ .+++..|+..|.. .+......
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 99999887 788888899999888764 355555554 5788887776531 13355788
Q ss_pred HHHHHHHhccCchhhhHHHhcCcHHHHHHHHc-------CC----chHHHHHHHHHHhhCC-HHH-------HHHH----
Q 012404 323 VASAIFNLCITHENKARAVRDGGVSVILKKIM-------DG----VHVDELLAILAMLSTN-HRA-------VEEI---- 379 (464)
Q Consensus 323 al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~-------~~----~~~~~a~~~L~~L~~~-~~~-------~~~i---- 379 (464)
++++++|+.........--..+.++.|+.++. .. ....+++.+|.|+--. .+. ...+
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 89999999766543322122344555554432 11 4567788888888432 111 1111
Q ss_pred HhcCcHHHHHHHHhcc----CC---hhHHHHHHHHHHHHhccChhhHHHHHH---------------hhccHHHHHHHhh
Q 012404 380 GDLGGVSCMLRIIRES----TC---DRNKENCIAILHTICLSDRTKWKAMRE---------------EESTHGTISKLAQ 437 (464)
Q Consensus 380 ~~~g~i~~Lv~ll~~~----~~---~~~~~~A~~~L~~L~~~~~~~~~~~~~---------------~~g~~~~L~~Ll~ 437 (464)
.....+..|+.+|... .. +..-.--+.+|..++..+...++.+.. ....-..|++|+.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 1223577788777652 11 123344566777777765433333322 2235568888888
Q ss_pred cCCHHHHHHHHHHHHHHhcccc
Q 012404 438 DGTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 438 ~g~~~~k~~A~~~L~~l~~~~~ 459 (464)
+-.+.+|..++.+|-.|++-+.
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhhH
Confidence 8778899999999998886543
No 105
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.15 E-value=0.00054 Score=45.14 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=35.6
Q ss_pred cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhcc
Q 012404 294 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 294 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 332 (464)
+++..+.+.|+++.|+++|.++++++++.++++|+||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467788899999999999998899999999999999973
No 106
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00043 Score=69.22 Aligned_cols=73 Identities=22% Similarity=0.434 Sum_probs=58.7
Q ss_pred cCCCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCC-----CCcchHHHHHHHHHHHHH
Q 012404 76 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT-----ILTPNHLIREMISQWCRS 149 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~-----~l~~n~~lk~~i~~~~~~ 149 (464)
....++.+|-|-||...+.+||++||||+||+.||.+-++. ...||.|+.++... ...+|+.+++.|..|+..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 33457999999999999999999999999999999997765 67899998887532 233477777888877653
No 107
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00024 Score=74.89 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=48.8
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcc
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTP 135 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~ 135 (464)
-++||+|.+-.+|-|++-|||.||-.||+..+......||.|+.+|.+.++.+
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 47999999999999999999999999999999877889999999999887765
No 108
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.06 E-value=0.017 Score=54.05 Aligned_cols=182 Identities=15% Similarity=0.080 Sum_probs=112.6
Q ss_pred hcCCHHHHHHHHHHHHHhcccC---cchhhhcc--cCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcH
Q 012404 272 RSGTIETRSNAAAALFTLSALD---SNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGV 346 (464)
Q Consensus 272 ~~~~~~~~~~aa~~L~~Ls~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v 346 (464)
.+.+-+.|..+...|..+.... +....+.. ...+..++..+.+....+...|+.++..|+..-.....-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4557889999999999888755 23333322 245567777777767789999999999998765444333334578
Q ss_pred HHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh---hhHHH
Q 012404 347 SVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR---TKWKA 421 (464)
Q Consensus 347 ~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~---~~~~~ 421 (464)
|.|++.+.++ .+++.|..+|..++..-.....+. +..+...+.+ .++.++..++..|..+....+ .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 9999998876 567888889998887533111110 2334444444 458999999999988877665 22111
Q ss_pred HHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 422 MREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 422 ~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
-..-..+++.+.+.+.++++.+++.|...+..+.+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 1101357788888999999999999999999886653
No 109
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.036 Score=56.84 Aligned_cols=258 Identities=13% Similarity=0.111 Sum_probs=161.2
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCCh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 264 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i 264 (464)
+..+.--+..|.-+-. -+ ..+.+.--....+.|..+|+ +.+.+++..+-.+|.++-..=.+....+..+..+
T Consensus 181 ~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~Ls------D~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i 252 (675)
T KOG0212|consen 181 PMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNMLS------DSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMI 252 (675)
T ss_pred chHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHHHhcCccccCcccch
Confidence 4445444555554433 12 23333322356667777777 4456776555554444321111222233445678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHH-HHHHHHH---HHHHhccCchhhhHH
Q 012404 265 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQS-AMKDVAS---AIFNLCITHENKARA 340 (464)
Q Consensus 265 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~al~---aL~~L~~~~~~~~~i 340 (464)
+.++.-+.++.+..+..|..-|.............--+|.+..++..+.+..+. .++.+.. .|..+++....+..
T Consensus 253 ~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~- 331 (675)
T KOG0212|consen 253 NVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE- 331 (675)
T ss_pred hhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-
Confidence 888888999999999999888888877665555555678888888888765432 3333322 34555555554444
Q ss_pred Hhc-CcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh
Q 012404 341 VRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 341 v~~-g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
++. ..+..|.+.+.++ ..+-.++.-+..|-....++--.......+.|++-|... ++.+-..++.+|.++|.....
T Consensus 332 id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 332 IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCccc
Confidence 444 3477788888765 455556666655555444444444446678888888754 599999999999999997653
Q ss_pred hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 418 KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 418 ~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
. .. -.++..|.++......-.+.++.-|+|.|+-.
T Consensus 411 ~--~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 411 P--NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred c--cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 2 11 23455666666666667888899999888743
No 110
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.05 E-value=0.00038 Score=66.37 Aligned_cols=65 Identities=17% Similarity=0.415 Sum_probs=51.8
Q ss_pred CCCCcccCccchhhccCcccCC-CCccccHHHHHHHHHcCCCCCCCCcccccCC----CCcchHHHHHHHH
Q 012404 79 SCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT----ILTPNHLIREMIS 144 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~----~l~~n~~lk~~i~ 144 (464)
++=.+.+|++|+..|.|+.++. |=|||||+||-+|+.. ..+||.|+..+... .+.+...|+..+.
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVy 80 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVY 80 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHH
Confidence 3555889999999999999877 9999999999999998 78999998776543 3455555655443
No 111
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.99 E-value=0.026 Score=49.11 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=96.7
Q ss_pred hhhhcccCchHHHHHhcccCC------HHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC----chHHHHHHH
Q 012404 296 KEVIGKSGALKPLIDLLDEGH------QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAI 365 (464)
Q Consensus 296 ~~~i~~~g~i~~Lv~lL~~~~------~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~----~~~~~a~~~ 365 (464)
...+.+.|++..|++++.++. .+....++.++..|-.++-.-...++...|..++.++... .+...|+++
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 345677899999999998875 3677889999999888776556677777788888888643 678899999
Q ss_pred HHHhhCCHHH-HHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh
Q 012404 366 LAMLSTNHRA-VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 366 L~~L~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
|.+++.++.. ...+.+.=-++.|+..|+.+ ++..+.+|..++..|....++
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCh
Confidence 9999998766 44444544589999999975 599999999999999887664
No 112
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.95 E-value=0.066 Score=55.39 Aligned_cols=237 Identities=17% Similarity=0.149 Sum_probs=153.8
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC-cchHHHHhcCCCC
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH-DNNKKLVAETPMV 263 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~~~ 263 (464)
.....+|+++|.|+...++..|..+.+ .|..+.++..|+.+... ..+.+..--..++|+-++.. .+.+..+....+.
T Consensus 46 ~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l~~~Lk~~~~~-~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 46 PDVSREALKCLCNALFLSPSARQIFVD-LGLAEKLCERLKNYSDS-SQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG 123 (446)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence 566789999999999999999999999 89999999999865320 12566777778888777644 4567677766566
Q ss_pred hHHHHHHHhc-----------------CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc---------CCH
Q 012404 264 IPLLMDALRS-----------------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE---------GHQ 317 (464)
Q Consensus 264 i~~Lv~lL~~-----------------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---------~~~ 317 (464)
+..++..|.. ...+.......+++|+.........-...+.++.|+.+|.. +..
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~ 203 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLD 203 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence 7767666531 12345666778899998765333221223455555555431 133
Q ss_pred HHHHHHHHHHHHhccCc-hh-------hh----HHHhcCcHHHHHHHHcCC-------c---hHHHHHHHHHHhhCC-HH
Q 012404 318 SAMKDVASAIFNLCITH-EN-------KA----RAVRDGGVSVILKKIMDG-------V---HVDELLAILAMLSTN-HR 374 (464)
Q Consensus 318 ~~~~~al~aL~~L~~~~-~~-------~~----~iv~~g~v~~Lv~lL~~~-------~---~~~~a~~~L~~L~~~-~~ 374 (464)
.....++.+|.|+-... .. .. .-.....+..|+.+|... . ...-.+.+|..++.. ..
T Consensus 204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~ 283 (446)
T PF10165_consen 204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE 283 (446)
T ss_pred hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence 56778888888883221 11 00 112224577888877521 2 233366777777775 44
Q ss_pred HHHHHHh---------------c-CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhc
Q 012404 375 AVEEIGD---------------L-GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEES 427 (464)
Q Consensus 375 ~~~~i~~---------------~-g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g 427 (464)
.|+.+.. . ..-..|++++.+.. +.++..+...|+.||..+.++ +++.-|
T Consensus 284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~d~~~---~v~~~G 348 (446)
T PF10165_consen 284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKEDASR---FVKYVG 348 (446)
T ss_pred HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhhhHHH---HHHHcC
Confidence 5555433 1 23567999998765 899999999999999977654 554444
No 113
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.94 E-value=0.0006 Score=68.97 Aligned_cols=66 Identities=24% Similarity=0.466 Sum_probs=55.0
Q ss_pred CCCcccCccchhhccCcccC-CCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcc-hHHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTP-NHLIREMISQW 146 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~-n~~lk~~i~~~ 146 (464)
+.+++.||+|..++.||+.. .|||.||+.||..|+.. +..||.+++++......+ ...+++.+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 66779999999999999994 89999999999999998 789999998887665554 34566666655
No 114
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00069 Score=68.28 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=55.2
Q ss_pred CCCcccCccchhhccCcccCCCCccccHHHHHHHHHcC----CCCCCCCcccccCCCCcchHH----HHHHHHHHHHHcC
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG----NRTCPRTQQVLSHTILTPNHL----IREMISQWCRSQG 151 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~----~~~~P~~~~~l~~~~l~~n~~----lk~~i~~~~~~~~ 151 (464)
.+.+..||||.+--.=|+++.|||.||=.||-++|..+ ...||.|+..+...+|.|-+- -++.++..+..+|
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 34489999999999999999999999999999988743 357999999988877665432 2333555555555
No 115
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.058 Score=55.38 Aligned_cols=239 Identities=15% Similarity=0.145 Sum_probs=159.8
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
.+.||.|-.-+. ..++.++...+..|.-|-..++ ...+.--+.+.+.|..+|...+.++|..+=.+|.++-..
T Consensus 166 ~~~ipLL~eriy------~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 166 PEFIPLLRERIY------VINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred HHHHHHHHHHHh------cCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 456666666666 5578899998888887754443 222222234778899999999999998777777665543
Q ss_pred Ccchhhhcc-cCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHH---HH
Q 012404 293 DSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELL---AI 365 (464)
Q Consensus 293 ~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~---~~ 365 (464)
-.+.....+ ...++.|+.-+.++.+..+..|+.-|.....-........-.|.+..++..+.+. ..++.+. ..
T Consensus 239 I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 239 IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 333333323 3467889999999999999999888887766544333333346666666666654 2333333 23
Q ss_pred HHHhhCCHHHHHHHHhcCc-HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHH
Q 012404 366 LAMLSTNHRAVEEIGDLGG-VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAK 444 (464)
Q Consensus 366 L~~L~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k 444 (464)
|..+++.+...++ ++.|. +..|.+.+..+ ...++-.++.-+..|-...|.+ -.+-....-..|.+-+.+.++.+.
T Consensus 319 l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~q--l~~h~~~if~tLL~tLsd~sd~vv 394 (675)
T KOG0212|consen 319 LLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQ--LLVHNDSIFLTLLKTLSDRSDEVV 394 (675)
T ss_pred HHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcch--hhhhccHHHHHHHHhhcCchhHHH
Confidence 4555665555555 55554 66777777765 4889999998888888888765 233223455566666677788899
Q ss_pred HHHHHHHHHHhccccccC
Q 012404 445 RKATGILERLKRTVNLTH 462 (464)
Q Consensus 445 ~~A~~~L~~l~~~~~~~~ 462 (464)
.++..+|.+++......|
T Consensus 395 l~~L~lla~i~~s~~~~~ 412 (675)
T KOG0212|consen 395 LLALSLLASICSSSNSPN 412 (675)
T ss_pred HHHHHHHHHHhcCccccc
Confidence 999999999988776544
No 116
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.87 E-value=0.0025 Score=41.83 Aligned_cols=40 Identities=10% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 373 HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
++++..+.+.|+++.|+++++++ ++..++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 45778889999999999999955 59999999999999873
No 117
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.14 Score=49.35 Aligned_cols=258 Identities=11% Similarity=0.104 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhhcCchhh----hhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCCh
Q 012404 189 TEAAKELRLLTKRMPSFR----ALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 264 (464)
Q Consensus 189 ~~a~~~L~~L~~~~~~~r----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i 264 (464)
.-+++.+..+..+++.|- ..+.+ .|..+.++..+. ++|.++...|...|..++..+..-..+..+.-.=
T Consensus 100 iLackqigcilEdcDtnaVseillvvN-aeilklildcIg------geddeVAkAAiesikrialfpaaleaiFeSellD 172 (524)
T KOG4413|consen 100 ILACKQIGCILEDCDTNAVSEILLVVN-AEILKLILDCIG------GEDDEVAKAAIESIKRIALFPAALEAIFESELLD 172 (524)
T ss_pred hhhHhhhhHHHhcCchhhHHHHHHHhh-hhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCC
Confidence 334444444444444221 12335 788899999887 5677888999999999998887777776654211
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhccc-CCHHHHHHHHHHHHHhccCchhhhHHH
Q 012404 265 P-LLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAV 341 (464)
Q Consensus 265 ~-~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~iv 341 (464)
+ .+..+--.-+.-+|......+..+... .......-.+|.+..|..=|+. .+.-+..+++...+.|...+-++.-+.
T Consensus 173 dlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla 252 (524)
T KOG4413|consen 173 DLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA 252 (524)
T ss_pred hHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc
Confidence 1 123332233445666666667666553 4555566678888888777765 466678889999999999888888888
Q ss_pred hcCcHHHHHHHHcCC---ch-HHHHHHHHHHhhCC----HHHHHHHHhc--CcHHHHHHHHhccCChhHHHHHHHHHHHH
Q 012404 342 RDGGVSVILKKIMDG---VH-VDELLAILAMLSTN----HRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTI 411 (464)
Q Consensus 342 ~~g~v~~Lv~lL~~~---~~-~~~a~~~L~~L~~~----~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L 411 (464)
+.|.|..+-.++... .. .-.++.....+-+. .-.-+++++. -+|....+++... ++..++.|+.+|..+
T Consensus 253 QeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGil 331 (524)
T KOG4413|consen 253 QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGIL 331 (524)
T ss_pred hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhc
Confidence 899999998888632 22 22244443333332 1122233332 2355566777654 489999999999999
Q ss_pred hccChhhHHHHHHhhcc---HHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 412 CLSDRTKWKAMREEEST---HGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~g~---~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
.++.... .++...|- -..+....+.+...-++.+...|.+++.
T Consensus 332 GSnteGa--dlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 332 GSNTEGA--DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred cCCcchh--HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 8876543 55543332 1223333343444455666666666653
No 118
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.042 Score=57.04 Aligned_cols=222 Identities=13% Similarity=0.126 Sum_probs=144.7
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC-cchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH-DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 291 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~ 291 (464)
++.++.+-.+|.... +....+++.|..+...+... +.... ..++|.++.-+.......+.+++..|..++.
T Consensus 212 Pyiv~~lp~il~~~~---d~~~~Vr~Aa~~a~kai~~~~~~~aV-----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 212 PYIVPILPSILTNFG---DKINKVREAAVEAAKAIMRCLSAYAV-----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred chHHhhHHHHHHHhh---ccchhhhHHHHHHHHHHHHhcCcchh-----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567777777776543 33456666555554433211 11111 1234445544444467888999999998887
Q ss_pred cCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCc-hHHHHHHHHHHhh
Q 012404 292 LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV-HVDELLAILAMLS 370 (464)
Q Consensus 292 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~-~~~~a~~~L~~L~ 370 (464)
..+......-..+||.|.+.|.+..+++++.+..+|..++.--+|.. |. -.+|.|++-+.++. -..+++..|..-.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~--~~ip~Lld~l~dp~~~~~e~~~~L~~tt 360 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQ--KIIPTLLDALADPSCYTPECLDSLGATT 360 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HH--HHHHHHHHHhcCcccchHHHHHhhccee
Confidence 76666666678899999999999999999999999999988766655 22 36889999998875 5666666655433
Q ss_pred CCHHHHHHHHhcCcHHHHHHHHhcc---CChhHHHHHHHHHHHHhccChh--hHHHHHHhhccHHHHHHHhhcCCHHHHH
Q 012404 371 TNHRAVEEIGDLGGVSCMLRIIRES---TCDRNKENCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGTARAKR 445 (464)
Q Consensus 371 ~~~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~A~~~L~~L~~~~~~--~~~~~~~~~g~~~~L~~Ll~~g~~~~k~ 445 (464)
--.+ ++.-.+..++.+++++ .+...+..++.+.+|+|.--++ .....+ ...++-|...+..-.|++|.
T Consensus 361 FV~~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR~ 433 (569)
T KOG1242|consen 361 FVAE-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVRA 433 (569)
T ss_pred eeee-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHHH
Confidence 2111 2223344555555542 3467789999999999986532 222222 23555555566666788888
Q ss_pred HHHHHHH
Q 012404 446 KATGILE 452 (464)
Q Consensus 446 ~A~~~L~ 452 (464)
-|+.+|.
T Consensus 434 vaarAL~ 440 (569)
T KOG1242|consen 434 VAARALG 440 (569)
T ss_pred HHHHHHH
Confidence 8888883
No 119
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.70 E-value=0.13 Score=52.41 Aligned_cols=198 Identities=19% Similarity=0.042 Sum_probs=122.6
Q ss_pred hHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
.+..|+..|.+. ...+..++..|..+-. .++.+.|+.+|. +.++.++..++.++...
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~------~~~p~vR~aal~al~~r---- 144 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLA------ASEPPGRAIGLAALGAH---- 144 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhc------CCChHHHHHHHHHHHhh----
Confidence 377888888665 4477777777764333 567788888887 55778887777666541
Q ss_pred chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 252 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 252 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
.....+.+..+|++.++.++..|+.+|..+- ...+++.|...+.+.++.++..|+.++..+-
T Consensus 145 --------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 145 --------RHDPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred --------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 1124567888898889999999999888754 3345677888888889999999998887663
Q ss_pred cCch--hhhHHH-hcCc-H-HHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHH-------HhcCcHHHHHHHHhccCChh
Q 012404 332 ITHE--NKARAV-RDGG-V-SVILKKIMDGVHVDELLAILAMLSTNHRAVEEI-------GDLGGVSCMLRIIRESTCDR 399 (464)
Q Consensus 332 ~~~~--~~~~iv-~~g~-v-~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i-------~~~g~i~~Lv~ll~~~~~~~ 399 (464)
.... ....+. +.|. . ..+...+... -...++.-|..+...+..+... .+..+++.|+..+.. +.
T Consensus 207 ~~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d~~vr~~a~~AlG~lg~p~av~~L~~~l~d---~~ 282 (410)
T TIGR02270 207 SRLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGPDAQAWLRELLQAAATRREALRAVGLVGDVEAAPWCLEAMRE---PP 282 (410)
T ss_pred CHhHHHHHHHHHhccCccHHHHHHHHHHhC-CchhHHHHHHHHhcChhhHHHHHHHHHHcCCcchHHHHHHHhcC---cH
Confidence 3211 011111 1111 0 0111111110 0114444455555554433222 233467888888863 45
Q ss_pred HHHHHHHHHHHHhcc
Q 012404 400 NKENCIAILHTICLS 414 (464)
Q Consensus 400 ~~~~A~~~L~~L~~~ 414 (464)
....|..++..|+.-
T Consensus 283 ~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 283 WARLAGEAFSLITGM 297 (410)
T ss_pred HHHHHHHHHHHhhCC
Confidence 888999999998864
No 120
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.60 E-value=0.12 Score=51.27 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=91.7
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS 294 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 294 (464)
.++.++..+. +.+..++..|...+..+. ...++|.+..+|...++.+|..++.+|..
T Consensus 44 ~~~~~~~~l~------~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~------ 100 (335)
T COG1413 44 AADELLKLLE------DEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGE------ 100 (335)
T ss_pred hHHHHHHHHc------CCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHc------
Confidence 5666667766 345666666666643321 12367778888888888888777764432
Q ss_pred chhhhcccCchHHHHHhccc-CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCH
Q 012404 295 NKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNH 373 (464)
Q Consensus 295 ~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~ 373 (464)
++...+++.|+++|.. ++..++..++.+|..+-.. .++..|+..+.+..... +...+. ...-
T Consensus 101 ----~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~-a~~~~~--~~~~ 163 (335)
T COG1413 101 ----LGDPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS-AAAALD--AALL 163 (335)
T ss_pred ----cCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh-hhhhcc--chHH
Confidence 2334567888888874 6777888888888766322 23666777676542111 221110 0000
Q ss_pred HHHH-------HHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccC
Q 012404 374 RAVE-------EIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 415 (464)
Q Consensus 374 ~~~~-------~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~ 415 (464)
..|. .+.+.-.++.+...+... ...++..|..+|..+...+
T Consensus 164 ~~r~~a~~~l~~~~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 164 DVRAAAAEALGELGDPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch
Confidence 1111 112223466666666644 3667777777777666653
No 121
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.57 E-value=0.011 Score=55.16 Aligned_cols=188 Identities=10% Similarity=0.055 Sum_probs=107.6
Q ss_pred CCChhhHHHHHHHHHccccCc---chHHHHhcC-CCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchH
Q 012404 231 GINPNLQEDVITTLLNLSIHD---NNKKLVAET-PMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALK 306 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~---~~~~~i~~~-~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~ 306 (464)
+.+.+.+.+|+.-|..+..+. .....+... ..++..+...+.+....+...|+.++..|+..-.....-.-...++
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 457788999999988886655 233333221 0234556666666667788888888888886533322212345789
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHh--
Q 012404 307 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGD-- 381 (464)
Q Consensus 307 ~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~-- 381 (464)
.|++.+.+.+.-+...|..+|..++..-..-..+ .++.+...+.+. .++..++..|..+...-. ....+..
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 9999998888888999999999987754411111 134444455544 577888888888876422 2222211
Q ss_pred --cCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHH
Q 012404 382 --LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR 423 (464)
Q Consensus 382 --~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~ 423 (464)
...++.+...+... ++.+++.|..+++.+....++....++
T Consensus 174 ~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred hHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 12456677777755 599999999999999887776644444
No 122
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0052 Score=59.31 Aligned_cols=48 Identities=21% Similarity=0.514 Sum_probs=41.7
Q ss_pred CCCcccCccchhhccCc-------------ccCCCCccccHHHHHHHHHcCCCCCCCCcccc
Q 012404 80 CPEEFKCPLSKELMRDP-------------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 128 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dP-------------v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l 128 (464)
.-++-+|-||++-|-.| --+||||.+--+|+..|++. +.+||.||.|+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 56788999999875443 57999999999999999998 78999999995
No 123
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.51 E-value=0.003 Score=44.73 Aligned_cols=55 Identities=29% Similarity=0.106 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHh
Q 012404 276 IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 330 (464)
Q Consensus 276 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 330 (464)
+.+|..|+++|.+++........-....+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999876654444444567899999999988889999999999875
No 124
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0015 Score=69.20 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=43.0
Q ss_pred CCCcccCccchhhccC-----cccCCCCccccHHHHHHHHHcCCCCCCCCcccc
Q 012404 80 CPEEFKCPLSKELMRD-----PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 128 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~d-----Pv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l 128 (464)
...+-.|+||.+.|.. |-.+||||.|...|+++|+.. ..+||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 4456789999999999 789999999999999999998 78999999843
No 125
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.36 E-value=0.0027 Score=60.66 Aligned_cols=53 Identities=15% Similarity=0.364 Sum_probs=43.5
Q ss_pred CCCcccCccchhhccC---cc-cCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCc
Q 012404 80 CPEEFKCPLSKELMRD---PV-ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 134 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~d---Pv-~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 134 (464)
-...|.||||+..|.. -| +.||||.|...+|++-- ....||.|+.+++..+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4668999999999954 23 45899999999999884 256799999999987765
No 126
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.29 E-value=0.05 Score=49.34 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhccCchhhhHHHhc----------------CcHHHHHHHHcCC--------chHHHHHHHHHHhhCC
Q 012404 317 QSAMKDVASAIFNLCITHENKARAVRD----------------GGVSVILKKIMDG--------VHVDELLAILAMLSTN 372 (464)
Q Consensus 317 ~~~~~~al~aL~~L~~~~~~~~~iv~~----------------g~v~~Lv~lL~~~--------~~~~~a~~~L~~L~~~ 372 (464)
......++.+|.||+...+++..+++. ..+..|++.+..+ .--++.+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 345667888999999988887766532 2467777776541 4567899999999999
Q ss_pred HHHHHHHHhc--Cc--HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHH
Q 012404 373 HRAVEEIGDL--GG--VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR 423 (464)
Q Consensus 373 ~~~~~~i~~~--g~--i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~ 423 (464)
+++|..+.+. +. +..|+-++.+. +..-+.-++++|.|+|.....+ ..++
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL 141 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLL 141 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhc
Confidence 9999999755 44 77888888765 5778888999999999987655 3444
No 127
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.23 E-value=0.032 Score=44.88 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhc-cCChhHHHHHHHHHHHHhccChhhHHHHHH
Q 012404 358 HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICLSDRTKWKAMRE 424 (464)
Q Consensus 358 ~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~ 424 (464)
.+...+.+|+|||.. +.++..+.+.|+++.++....- ..+|-.+|.|+.++.+|+..+++. ++++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN-Q~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN-QEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH-HHHHH
Confidence 456788999999985 7899999999999999976553 456999999999999999999876 44443
No 128
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0065 Score=58.23 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=41.9
Q ss_pred CCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 81 PEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
.++-+||||.-=--..|+.||||.-|..||.+|+.+ .+.|-||+....
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 468899999977778899999999999999999998 688999987543
No 129
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0027 Score=59.79 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=42.1
Q ss_pred cCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 85 KCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 85 ~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
.||||..-|.-||.++|+|.||.-||+--..++..+||+||.|++..
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999876666677899999998764
No 130
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.13 E-value=0.013 Score=41.38 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 398 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 398 ~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
+.++..|+++|.+++...+...+... ..+++.|..++++.++.++..|++.|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 35789999999998888877666655 58999999999999999999999999765
No 131
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.57 Score=45.31 Aligned_cols=225 Identities=12% Similarity=0.091 Sum_probs=149.0
Q ss_pred CCChhhHHHHHHHHHccccCcc-h---HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchH
Q 012404 231 GINPNLQEDVITTLLNLSIHDN-N---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALK 306 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~-~---~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~ 306 (464)
.+|..++.-++..+..+-.+-+ | -...+-..+.++.++..+-..+.++-.+|...|..++..++.-..+..+....
T Consensus 93 addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellD 172 (524)
T KOG4413|consen 93 ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLD 172 (524)
T ss_pred CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCC
Confidence 3344555556665554433322 2 22222234689999999988899999999999999999988888887776655
Q ss_pred H--HHHhcccCCHHHHHHHHHHHHHhccC-chhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHH
Q 012404 307 P--LIDLLDEGHQSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIG 380 (464)
Q Consensus 307 ~--Lv~lL~~~~~~~~~~al~aL~~L~~~-~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~ 380 (464)
. ++++-...+.-++...+..+..+.+- ++.....-..|.+..|..-|... -+...++.....|+....+++-+.
T Consensus 173 dlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla 252 (524)
T KOG4413|consen 173 DLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA 252 (524)
T ss_pred hHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc
Confidence 4 34444445556677777777777654 45555555678888888877752 467778999999999999999999
Q ss_pred hcCcHHHHHHHHhc-cCChhHHHHHHHHHHHHhccC------hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 012404 381 DLGGVSCMLRIIRE-STCDRNKENCIAILHTICLSD------RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILER 453 (464)
Q Consensus 381 ~~g~i~~Lv~ll~~-~~~~~~~~~A~~~L~~L~~~~------~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~ 453 (464)
+.|.|..+..++.. ++++-.+-.+......+.... ++...+.. -.+++-..++....++...+.|...|-.
T Consensus 253 QeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceal--iiaidgsfEmiEmnDpdaieaAiDalGi 330 (524)
T KOG4413|consen 253 QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEAL--IIAIDGSFEMIEMNDPDAIEAAIDALGI 330 (524)
T ss_pred hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHH--HHHHHhhHHhhhcCCchHHHHHHHHHHh
Confidence 99999999999874 333555554555444433321 11111111 1234445556677788888888888877
Q ss_pred Hhcc
Q 012404 454 LKRT 457 (464)
Q Consensus 454 l~~~ 457 (464)
|...
T Consensus 331 lGSn 334 (524)
T KOG4413|consen 331 LGSN 334 (524)
T ss_pred ccCC
Confidence 7543
No 132
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.0048 Score=56.29 Aligned_cols=53 Identities=13% Similarity=0.427 Sum_probs=46.8
Q ss_pred CcccCccchhhccCcc----cCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcc
Q 012404 82 EEFKCPLSKELMRDPV----ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTP 135 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv----~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~ 135 (464)
.-|.||+|.+.+++.+ +-||||.++..|.++.... +..||+|..|++.+++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 4699999999998854 5689999999999999886 789999999999988876
No 133
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.05 E-value=0.86 Score=45.13 Aligned_cols=187 Identities=21% Similarity=0.273 Sum_probs=114.4
Q ss_pred hhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 172 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
..+..+++.+.+. ...+..+...+..+.. ..+++.|..+|. +.++.++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~------d~~~~vr~~a~~aLg~~~-- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLS------DEDPRVRDAAADALGELG-- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhc------CCCHHHHHHHHHHHHccC--
Confidence 3566777777654 5556666655443332 457888889998 567788888888776542
Q ss_pred cchHHHHhcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 251 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
.+..++.|+.+|+ +.+..+|..++.+|..+-.. .++..|+.++......+ ++..+
T Consensus 103 ---------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~---a~~~~-- 158 (335)
T COG1413 103 ---------DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS---AAAAL-- 158 (335)
T ss_pred ---------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh---hhhhc--
Confidence 2347888999999 47899999999999876542 23777888887654323 11111
Q ss_pred hccCchhhhH-------HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhH
Q 012404 330 LCITHENKAR-------AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN 400 (464)
Q Consensus 330 L~~~~~~~~~-------iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 400 (464)
.......|.. +...-.++.+++++.+. .++..|..+|..+.... ..+...+...+... +..+
T Consensus 159 ~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~-~~~v 229 (335)
T COG1413 159 DAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE-SLEV 229 (335)
T ss_pred cchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC-CHHH
Confidence 0000011211 12234678888888865 57888888888887765 22234444444433 2455
Q ss_pred HHHHHHHHHHH
Q 012404 401 KENCIAILHTI 411 (464)
Q Consensus 401 ~~~A~~~L~~L 411 (464)
+..++.+|..+
T Consensus 230 r~~~~~~l~~~ 240 (335)
T COG1413 230 RKAALLALGEI 240 (335)
T ss_pred HHHHHHHhccc
Confidence 55555544443
No 134
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.01 E-value=2.3 Score=44.29 Aligned_cols=248 Identities=17% Similarity=0.165 Sum_probs=125.8
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHH-------
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLV------- 257 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i------- 257 (464)
.-++.++++.+..++.++ .-..+.+ ..|..|-.+|+ +.....+-.|+++|..|+.....+...
T Consensus 278 emV~lE~Ar~v~~~~~~n--v~~~~~~--~~vs~L~~fL~------s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEs 347 (898)
T COG5240 278 EMVFLEAARAVCALSEEN--VGSQFVD--QTVSSLRTFLK------STRVVLRFSAMRILNQLAMKYPQKVSVCNKEVES 347 (898)
T ss_pred hhhhHHHHHHHHHHHHhc--cCHHHHH--HHHHHHHHHHh------cchHHHHHHHHHHHHHHHhhCCceeeecChhHHH
Confidence 556778888888888754 1222222 35566666776 456788889999998887654332221
Q ss_pred --hcCCCCh--HHHHHHHhcCCHHHHHHHHHHHHHhccc--CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 258 --AETPMVI--PLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 258 --~~~~~~i--~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
...+.-| =++..+|+.|+.+........+-+...+ +..+..+++ ++..|--+.. .-+..-+..|.+.-
T Consensus 348 LIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~id--a~rsLsl~Fp----~k~~s~l~FL~~~L 421 (898)
T COG5240 348 LISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAID--ALRSLSLLFP----SKKLSYLDFLGSSL 421 (898)
T ss_pred HhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHH--HHHHHHhhCc----HHHHHHHHHHHHHH
Confidence 1111111 1345556666655555555544444332 222222211 2222222111 11222222222221
Q ss_pred cCchhhhHHHhcCcHHHHHHHHcC-CchHHHHHHHHHHhhCC---HHHH----HHHHhcC--------cHHHHH-HHHhc
Q 012404 332 ITHENKARAVRDGGVSVILKKIMD-GVHVDELLAILAMLSTN---HRAV----EEIGDLG--------GVSCML-RIIRE 394 (464)
Q Consensus 332 ~~~~~~~~iv~~g~v~~Lv~lL~~-~~~~~~a~~~L~~L~~~---~~~~----~~i~~~g--------~i~~Lv-~ll~~ 394 (464)
.+ ++-.++-+ -.|..+.+++.. +..++.|+..|+..-.+ ++.. ..+.+.| .|..+. .++-.
T Consensus 422 ~~-eGg~eFK~-~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE 499 (898)
T COG5240 422 LQ-EGGLEFKK-YMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILE 499 (898)
T ss_pred Hh-cccchHHH-HHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh
Confidence 11 11111111 134455555553 36677776665555433 2211 1122332 133333 23322
Q ss_pred cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 395 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 395 ~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
+..++..|+.+|..++.+..+. .. ...+...|.+.+.+.++++++.|+.+|++|..
T Consensus 500 --N~ivRsaAv~aLskf~ln~~d~---~~-~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 500 --NNIVRSAAVQALSKFALNISDV---VS-PQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred --hhHHHHHHHHHHHHhccCcccc---cc-HHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 2678888999987766654322 22 12344566677888899999999999999974
No 135
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.32 Score=54.25 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=127.7
Q ss_pred CCChhhHHHHHHHHHccccCcchHHHHhcCC--CChHHHHHHHhcCCHHHHHHHHHHHHHhcccC--cchhhhcccCchH
Q 012404 231 GINPNLQEDVITTLLNLSIHDNNKKLVAETP--MVIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALK 306 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~--~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~ 306 (464)
+.+..+|..+-.+|..++..+.... .+... .+...|.+.+++-....+.....+|..|-... +....+. ..|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~-~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEG-LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 4468899999999999887743221 12111 13334445555555566666666776665433 2233332 2345
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhcc-----Cc-hhhhHHHhcCcHHHHHHHHcC----CchHHHHHHHHHHhhCCHHHH
Q 012404 307 PLIDLLDEGHQSAMKDVASAIFNLCI-----TH-ENKARAVRDGGVSVILKKIMD----GVHVDELLAILAMLSTNHRAV 376 (464)
Q Consensus 307 ~Lv~lL~~~~~~~~~~al~aL~~L~~-----~~-~~~~~iv~~g~v~~Lv~lL~~----~~~~~~a~~~L~~L~~~~~~~ 376 (464)
.++=.++..+...++.|..+|..++. .. +++ ....|...+..+.. ......|.. |..+..--...
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP----ASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHH
Confidence 55545566688899999999998873 11 122 01134444444442 222222332 33333221222
Q ss_pred HHHHhcCcHHHH----HHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012404 377 EEIGDLGGVSCM----LRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 452 (464)
Q Consensus 377 ~~i~~~g~i~~L----v~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~ 452 (464)
..+.+.+.+..+ ...|. +.++.....|++.+..++...|+.+-.-.. ..+++.+..|++.++...+.+..-+|+
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 223333334444 44454 446999999999999999888765433332 458888889999999999999999999
Q ss_pred HHhc
Q 012404 453 RLKR 456 (464)
Q Consensus 453 ~l~~ 456 (464)
.|-+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 7754
No 136
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.88 E-value=0.22 Score=51.22 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=114.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCH----HHHHHHHHHHHHhccCchhhhH
Q 012404 264 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQ----SAMKDVASAIFNLCITHENKAR 339 (464)
Q Consensus 264 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~al~aL~~L~~~~~~~~~ 339 (464)
...+.+++.+|+...+..+...|.+++........+....++..|..++.+++. ......+.++..|-...-.-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 345778889999999999999999999988888888888899999999988743 5566666666666544433333
Q ss_pred HHhcCcHHHHHHHHcC----CchHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 340 AVRDGGVSVILKKIMD----GVHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 340 iv~~g~v~~Lv~lL~~----~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
.+...+|.....+..- ..+...|+..|.++..+.. -+..+.+.--+..|+..++.++ ...+..|...+..+...
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFRK 243 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHhh
Confidence 3444445555555532 2678889999999998865 6667777777999999999764 88888899999988876
Q ss_pred Chh
Q 012404 415 DRT 417 (464)
Q Consensus 415 ~~~ 417 (464)
.++
T Consensus 244 a~~ 246 (713)
T KOG2999|consen 244 APD 246 (713)
T ss_pred CCh
Confidence 653
No 137
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.87 E-value=0.0088 Score=45.96 Aligned_cols=46 Identities=26% Similarity=0.477 Sum_probs=34.0
Q ss_pred ccCccchhhccC-cccC-CCCccccHHHHHHHHHc--CCCCCCCCccccc
Q 012404 84 FKCPLSKELMRD-PVIL-ASGQTFDRPYIQRWLKA--GNRTCPRTQQVLS 129 (464)
Q Consensus 84 f~CPi~~~~m~d-Pv~~-~~g~~~~r~~I~~~~~~--~~~~~P~~~~~l~ 129 (464)
-+||.+...=.| |++. .|||.|-..||.+|+.. ..+.||.+|++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 345555544334 6555 59999999999999985 3578999999864
No 138
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.85 E-value=0.009 Score=55.24 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=46.0
Q ss_pred cccCccchhhccCcccCC-CCccccHHHHHHHHHcC-CCCCCCCccc--c--cCCCCcchHHHHHHHHH
Q 012404 83 EFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG-NRTCPRTQQV--L--SHTILTPNHLIREMISQ 145 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~-~~~~P~~~~~--l--~~~~l~~n~~lk~~i~~ 145 (464)
.++|||+.....+||+-. |||.|||..|+..+... .-.||+-+-+ . ....+.+...+++.|++
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 389999999999999865 99999999999998742 3469996554 2 22344454455555544
No 139
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.80 E-value=1.6 Score=40.61 Aligned_cols=238 Identities=12% Similarity=0.165 Sum_probs=138.9
Q ss_pred hHHHHHHhhcCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhh-hcccccc-----cCCCChhhHHHHHHHHHc
Q 012404 173 HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKC-----ENGINPNLQEDVITTLLN 246 (464)
Q Consensus 173 ~i~~Lv~~Ls~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~-lL~~~~~-----~~~~~~~~~~~A~~~L~~ 246 (464)
.+.+++-.+.+. ..++.|+.+|..--+..+.....+-.+-|.+..|+. .+.-+.. -....+.-..+|+..|.-
T Consensus 27 k~~~~i~~l~~~-p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQc 105 (293)
T KOG3036|consen 27 KAYQLILSLVSP-PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQC 105 (293)
T ss_pred chhhHHHHhhCC-chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHH
Confidence 355666666543 455556555544333333333233222333333321 1111100 001134556788999999
Q ss_pred cccCcchHHHHhcCC---CChHHHHHHHhcCC-HHHHHHHHHHHHHhcccCcch--hhhcccCchHHHHHhcccCCHHHH
Q 012404 247 LSIHDNNKKLVAETP---MVIPLLMDALRSGT-IETRSNAAAALFTLSALDSNK--EVIGKSGALKPLIDLLDEGHQSAM 320 (464)
Q Consensus 247 Ls~~~~~~~~i~~~~---~~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~ 320 (464)
++.+++.+..+..+. ...|.|....++.+ .-.|..+.++|..|..+++.- ..+...++||..+..+..|+...+
T Consensus 106 vASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSK 185 (293)
T KOG3036|consen 106 VASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSK 185 (293)
T ss_pred HhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHH
Confidence 999999999998874 12233333333333 457889999999999876532 234468999999999999998888
Q ss_pred HHHHHHHHHhccCchhhhHH----HhcCcHHH----HHHHHc-CC--chHHHHHHHHHHhhCCHHHHHHHHhc--CcH--
Q 012404 321 KDVASAIFNLCITHENKARA----VRDGGVSV----ILKKIM-DG--VHVDELLAILAMLSTNHRAVEEIGDL--GGV-- 385 (464)
Q Consensus 321 ~~al~aL~~L~~~~~~~~~i----v~~g~v~~----Lv~lL~-~~--~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i-- 385 (464)
.-|...+.-+-.++.+-.-+ -+--+|.. ++.-+. .+ .+..+++.+..+|+.++..|.++... ..+
T Consensus 186 tvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lrd 265 (293)
T KOG3036|consen 186 TVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLRD 265 (293)
T ss_pred HHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhcc
Confidence 88888887776666543222 22223332 222222 23 67888999999999999999888655 111
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 386 SCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 386 ~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
...-.+++++ ...+.--...+.+++.
T Consensus 266 ~tfs~~l~~D--~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 266 GTFSLLLKDD--PETKQWLQQLLKNLCT 291 (293)
T ss_pred chHHHHHhcC--hhHHHHHHHHHHHhcc
Confidence 1233455532 4455444455555543
No 140
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.80 E-value=0.16 Score=44.32 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=88.4
Q ss_pred hHHHhcCcHHHHHHHHcCCc--------hHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccC-ChhHHHHHHHHH
Q 012404 338 ARAVRDGGVSVILKKIMDGV--------HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAIL 408 (464)
Q Consensus 338 ~~iv~~g~v~~Lv~lL~~~~--------~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~A~~~L 408 (464)
..+++.||+..|++++.++. ....++.++..|-.+.-.-=...+...|.+++..+.... +..+.+.|+.+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45778899999999998652 344577777777766432223455557888888887533 478889999999
Q ss_pred HHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 409 HTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 409 ~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
.++..+++..+..+. ++--++.|+..++..+..++.+|..++--|
T Consensus 85 Es~Vl~S~~ly~~V~-~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVE-QEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHhCCHHHHHHHh-ccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999998887555554 578999999999999999999999988755
No 141
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.13 Score=54.59 Aligned_cols=207 Identities=13% Similarity=0.111 Sum_probs=130.7
Q ss_pred Cchhhhhhhcccccc-cCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 214 DAIPQLLSPLSESKC-ENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 214 g~i~~Lv~lL~~~~~-~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
+.+|.|+++|..... ...++......|-..|.-++..- +..|+. .++|.+-.-+++++..-++.++-++.++-..
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~--~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVP--HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchh--hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 678888888875321 11122233333333333222211 112333 2677666677888999999999999988876
Q ss_pred C-cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCch-hhhH-HHhcCcHHHHHHHHcCC-chHHHHHHHHHH
Q 012404 293 D-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKAR-AVRDGGVSVILKKIMDG-VHVDELLAILAM 368 (464)
Q Consensus 293 ~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~-iv~~g~v~~Lv~lL~~~-~~~~~a~~~L~~ 368 (464)
. ..+..-.-.+++|.++.++.+.+.-++..++|+|+.++..-. -+.- ..-.+.++.++.-|.+. .+..+++|++.+
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~ 474 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFIS 474 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHH
Confidence 5 334444456889999999997788888999999999986543 2221 22346778888877764 888999999999
Q ss_pred hhCC-HH-HHHH----HHh---cCcHHHHHHHHhc--cCChhHHHHHHHHHHHHhccChhhHHHHHH
Q 012404 369 LSTN-HR-AVEE----IGD---LGGVSCMLRIIRE--STCDRNKENCIAILHTICLSDRTKWKAMRE 424 (464)
Q Consensus 369 L~~~-~~-~~~~----i~~---~g~i~~Lv~ll~~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~ 424 (464)
|+.. ++ .+.. ... ...|..|++.-.. +.....+..|-.+|..|-.+++..+..++.
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~ 541 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ 541 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9953 11 1111 111 0123444444433 233577888999999999988876666653
No 142
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0058 Score=59.72 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=40.0
Q ss_pred ccCccchhhccCcc---cCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 84 FKCPLSKELMRDPV---ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 84 f~CPi~~~~m~dPv---~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
++|-||.|-+.+=. ++||+|.|=..||..|+......||+|+++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 79999999987643 68999999999999999986667999998653
No 143
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.076 Score=55.60 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=114.1
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHH--HhcCC--CChHHHHHHHhcCCHHHHHHHHHHHHH
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKL--VAETP--MVIPLLMDALRSGTIETRSNAAAALFT 288 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~--i~~~~--~~i~~Lv~lL~~~~~~~~~~aa~~L~~ 288 (464)
+..+|.|..+|. +++...+|-|..+|..+..+...... ....+ -.+|.++.+.++.++..|..|..++-.
T Consensus 127 pelLp~L~~~L~------s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq 200 (885)
T KOG2023|consen 127 PELLPQLCELLD------SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQ 200 (885)
T ss_pred hhHHHHHHHHhc------CCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhh
Confidence 356788888888 55667888888888888766532111 11111 368999999999999999999988866
Q ss_pred hcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHh--cCcHHHHHHHHcCC--chHHHHHH
Q 012404 289 LSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMDG--VHVDELLA 364 (464)
Q Consensus 289 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~--~g~v~~Lv~lL~~~--~~~~~a~~ 364 (464)
........-.+.-...++.|..+-.+++++++++.+.+|..|-.....| ++- .++|..++..-++. ++.-+|+.
T Consensus 201 ~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~tqd~dE~VALEACE 278 (885)
T KOG2023|consen 201 FIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRTQDVDENVALEACE 278 (885)
T ss_pred eeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHccCcchhHHHHHHH
Confidence 5543321111111345667777777779999999999999887554333 222 14455555555543 68888999
Q ss_pred HHHHhhCCHHHHHHHHhc--CcHHHHHH
Q 012404 365 ILAMLSTNHRAVEEIGDL--GGVSCMLR 390 (464)
Q Consensus 365 ~L~~L~~~~~~~~~i~~~--g~i~~Lv~ 390 (464)
....+|..+-.+..+... ..||.|+.
T Consensus 279 Fwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 279 FWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 999999988666555444 45666664
No 144
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.0067 Score=55.33 Aligned_cols=37 Identities=35% Similarity=0.466 Sum_probs=33.0
Q ss_pred CCCcccCccchhhccCcccCCCCccccHHHHHHHHHc
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 116 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~ 116 (464)
|-+.-+|.+|.+..+|||+.|.||.|||.+|-+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 4445689999999999999999999999999998874
No 145
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.60 E-value=0.07 Score=40.14 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhcC
Q 012404 320 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLG 383 (464)
Q Consensus 320 ~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g 383 (464)
++.|++++.++++.+.+-.-+-+.++++.++++.... .++-.|..+|..+++..++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 6789999999999888777677789999999998854 788899999999999999999887766
No 146
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.07 Score=55.77 Aligned_cols=103 Identities=13% Similarity=0.180 Sum_probs=65.5
Q ss_pred HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh
Q 012404 340 AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 340 iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
++..|+=..+|.-|.++ +++..|+..|+.|+.+..+-. ..++.-||+++... .+.++..|..+|..|+.+-.
T Consensus 369 iI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE-~~~VRL~ai~aL~~Is~~l~- 442 (823)
T KOG2259|consen 369 IIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDE-IEVVRLKAIFALTMISVHLA- 442 (823)
T ss_pred cccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHhe-
Confidence 34445555666666555 788999999999987633211 12356788999855 48899999999999887621
Q ss_pred hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 418 KWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 418 ~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
+ .+..++.+..-+.+.++.+++....+|.+.
T Consensus 443 -----i-~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 443 -----I-REEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred -----e-cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 1 123444555555555555555555555543
No 147
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.7 Score=49.38 Aligned_cols=255 Identities=15% Similarity=0.127 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hHHHHhcCCCCh
Q 012404 186 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVI 264 (464)
Q Consensus 186 ~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i 264 (464)
-.++.++.+|..++. +-........+..++..++.-.+.. .++..++-.|..+|.|--.... |-..=.+.+.++
T Consensus 145 ~~k~~slealGyice-~i~pevl~~~sN~iLtaIv~gmrk~----e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iM 219 (859)
T KOG1241|consen 145 MVKESSLEALGYICE-DIDPEVLEQQSNDILTAIVQGMRKE----ETSAAVRLAALNALYNSLEFTKANFNNEMERNYIM 219 (859)
T ss_pred HHHHHHHHHHHHHHc-cCCHHHHHHHHhHHHHHHHhhcccc----CCchhHHHHHHHHHHHHHHHHHHhhccHhhhceee
Confidence 356778888988887 3333333333235555666555432 3467788889999987533221 221112223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchh-------
Q 012404 265 PLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHEN------- 336 (464)
Q Consensus 265 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~------- 336 (464)
....+.-.+++.+++.+|..+|..+.... +.-..-.....+..-+.-++++++++.-.+...=.++|...-.
T Consensus 220 qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e 299 (859)
T KOG1241|consen 220 QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE 299 (859)
T ss_pred eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667788999999999998887632 2222222233445555666777888887787777777654311
Q ss_pred -----h----hHHHh---cCcHHHHHHHHcC--C-------chHHH---HHHHHHHhhCCHHHHHHHHhcCcHHHHHHH-
Q 012404 337 -----K----ARAVR---DGGVSVILKKIMD--G-------VHVDE---LLAILAMLSTNHRAVEEIGDLGGVSCMLRI- 391 (464)
Q Consensus 337 -----~----~~iv~---~g~v~~Lv~lL~~--~-------~~~~~---a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~l- 391 (464)
. ..+.+ .+++|.|+++|.. + +.... ++..+..++.+ ..++.++.+
T Consensus 300 ~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D----------~Iv~~Vl~Fi 369 (859)
T KOG1241|consen 300 AVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD----------DIVPHVLPFI 369 (859)
T ss_pred HhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc----------cchhhhHHHH
Confidence 1 11111 1678899998862 1 22333 33333333322 233444444
Q ss_pred ---HhccCChhHHHHHHHHHHHHhccCh-hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 392 ---IRESTCDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 392 ---l~~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
+++. +-+.++.|+.++..+-.... .+...++ .++++.++.++.+.+--+|+.++|.|-.+.++-
T Consensus 370 ee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 370 EENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred HHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 4433 36788889999988877654 3333444 589999999998777778999999999888764
No 148
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.077 Score=54.26 Aligned_cols=136 Identities=6% Similarity=0.001 Sum_probs=102.9
Q ss_pred HHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCCc--hHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccC
Q 012404 321 KDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGV--HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIREST 396 (464)
Q Consensus 321 ~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~~--~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~ 396 (464)
.+++..|..++.+- -.|..+.+..++..|+++|++++ +.--+...++|...- +.-+.-+.+.|.|..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 34444555555443 46777888899999999999873 344477777777764 56677788999999999999865
Q ss_pred ChhHHHHHHHHHHHHhccChhh--HHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcccc
Q 012404 397 CDRNKENCIAILHTICLSDRTK--WKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 397 ~~~~~~~A~~~L~~L~~~~~~~--~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~ 459 (464)
++..|.+..|+|..+..+..+. .+-+. -.++..++.+..+.+-.+++....+|||+..-.+
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~La--kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLA--KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHH--hcCHHHHHHHhcCcccccHHHHHHHHHhcccccc
Confidence 4789999999999998876533 22233 4678888899999999999999999999965433
No 149
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.30 E-value=0.75 Score=44.39 Aligned_cols=221 Identities=11% Similarity=0.071 Sum_probs=148.3
Q ss_pred hhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHhcccCcchhhhcc-cCchHHHHH
Q 012404 234 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLID 310 (464)
Q Consensus 234 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ 310 (464)
+-++-.|+..+.++....+.|..+-....+-..++.++++. ..+.+-++.-.++-|+.+......|-. ...|.-|++
T Consensus 163 ~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~ 242 (432)
T COG5231 163 FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIA 242 (432)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999988888877665555666788888764 578999999999999887765544433 356778888
Q ss_pred hcccC-CHHHHHHHHHHHHHhcc-Cc-hhhhHHHhcCcHHHHHHHHcCC-----chHH---HHHHHHHH----hh-----
Q 012404 311 LLDEG-HQSAMKDVASAIFNLCI-TH-ENKARAVRDGGVSVILKKIMDG-----VHVD---ELLAILAM----LS----- 370 (464)
Q Consensus 311 lL~~~-~~~~~~~al~aL~~L~~-~~-~~~~~iv~~g~v~~Lv~lL~~~-----~~~~---~a~~~L~~----L~----- 370 (464)
+++.. ...+.+-++..+.|++. .+ ..-..+.-.|-+..-+++|... +++. ..-..|.+ +|
T Consensus 243 iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y 322 (432)
T COG5231 243 IVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNY 322 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 88775 56788889999999987 32 3333444445455555555422 1111 11111111 11
Q ss_pred ----------CC---------HHHHHHHHhcC--cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccH
Q 012404 371 ----------TN---------HRAVEEIGDLG--GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTH 429 (464)
Q Consensus 371 ----------~~---------~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~ 429 (464)
-+ +.+...+.+.+ .+..|.++++.......-.-|+.=+..+....|+- ..++..-|+-
T Consensus 323 ~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~k 401 (432)
T COG5231 323 LNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-NAVLSKYGVK 401 (432)
T ss_pred HHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-HHHHHHhhhH
Confidence 11 23344454433 47888899996542224455777788888877765 4555568999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 430 GTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 430 ~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
+.+..|+.+.++++|-.|..+++.+-
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999998653
No 150
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.28 E-value=1.5 Score=45.59 Aligned_cols=255 Identities=11% Similarity=0.071 Sum_probs=149.3
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhh-hcccccccCCCChhhHHHHHHHHHc-cccCcchHHHHhcCCC
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKCENGINPNLQEDVITTLLN-LSIHDNNKKLVAETPM 262 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~~~~~A~~~L~~-Ls~~~~~~~~i~~~~~ 262 (464)
...+.+++..+.+.+. +......+..+..++-.++. .++. .++..++-.|+.+|.+ |..-..|-..-.+.+.
T Consensus 148 ~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~-----et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy 221 (858)
T COG5215 148 VSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKN-----ETTSAVRLAALKALMDSLMFVQGNFCYEEERNY 221 (858)
T ss_pred hHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhccc-----CchHHHHHHHHHHHHHHHHHHHHhhcchhhhch
Confidence 4567788888888886 44444444442233333332 2232 3456777888888877 4333332222222334
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhh--
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKA-- 338 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~-- 338 (464)
++...++.-+.++.+.+.++..+|..+.... ..-....+.-....+...+++.+.++...|...-..+|... ++-.
T Consensus 222 ~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~ 301 (858)
T COG5215 222 FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMED 301 (858)
T ss_pred hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4555666667778899999999998876532 22223333333344455667778888877777666666543 1111
Q ss_pred --------------HHHhcCcHHHHHHHHcC--C-------chHHHH---HHHHHHhhCCHHHHHHHHhcCcHHHHHHH-
Q 012404 339 --------------RAVRDGGVSVILKKIMD--G-------VHVDEL---LAILAMLSTNHRAVEEIGDLGGVSCMLRI- 391 (464)
Q Consensus 339 --------------~iv~~g~v~~Lv~lL~~--~-------~~~~~a---~~~L~~L~~~~~~~~~i~~~g~i~~Lv~l- 391 (464)
+..-.+++|.|+.+|.. + +....| +.....++.+. .+..++.+
T Consensus 302 ~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~----------i~~pVl~Fv 371 (858)
T COG5215 302 KYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK----------IMRPVLGFV 371 (858)
T ss_pred hhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH----------hHHHHHHHH
Confidence 11122478999999963 1 233333 33334444332 12222232
Q ss_pred ---HhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 392 ---IRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 392 ---l~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+++ .+-..++.|+.++..+-......+..-+. ..+++.+..+..+.+--+|..++|.+-.++++
T Consensus 372 Eqni~~-~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 372 EQNIRS-ESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHhccC-chhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 333 34677899999999888766544333333 57778888877766666999999998888765
No 151
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.0092 Score=56.15 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=41.0
Q ss_pred ccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 84 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
|-|-||.+.+.+||++.|||+||..|-.+.+.. +..|++|.+...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 789999999999999999999999999999887 578999988654
No 152
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.24 E-value=0.86 Score=46.28 Aligned_cols=181 Identities=14% Similarity=0.164 Sum_probs=117.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccCc----chhhhcccCchHHHHHhcccC------CHH-HHHHHHHHHHHhccCch
Q 012404 267 LMDALRSGTIETRSNAAAALFTLSALDS----NKEVIGKSGALKPLIDLLDEG------HQS-AMKDVASAIFNLCITHE 335 (464)
Q Consensus 267 Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~------~~~-~~~~al~aL~~L~~~~~ 335 (464)
+..+++..+.+-+-+|.-....++.+++ +|..+.++=+++.+=.||.+. .+. -+.-++..|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4455555577777777777777877653 566677887889999999753 122 35667888888999887
Q ss_pred h--hhHHHhcCcHHHHHHHHcCC---------chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHH
Q 012404 336 N--KARAVRDGGVSVILKKIMDG---------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 404 (464)
Q Consensus 336 ~--~~~iv~~g~v~~Lv~lL~~~---------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 404 (464)
. -..|++ .||.|.+.+..+ .+.+.+-..|..+++.+.+...++..|+++++.++-.-.+......-|
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4 344544 799999999732 278889999999999999999999999999999765533223444455
Q ss_pred HHHHHHHhccChhhHHHHHHhhccHHHHHHH---hhcCCHHHHHHHHHHHH
Q 012404 405 IAILHTICLSDRTKWKAMREEESTHGTISKL---AQDGTARAKRKATGILE 452 (464)
Q Consensus 405 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~L---l~~g~~~~k~~A~~~L~ 452 (464)
+.++..+...- ...++-. ..+...+..+ ++......|-.+..+|.
T Consensus 174 l~Vlll~~~~~-~cw~e~~--~~flali~~va~df~~~~~a~KfElc~lL~ 221 (698)
T KOG2611|consen 174 LKVLLLLVSKL-DCWSETI--ERFLALIAAVARDFAVLHNALKFELCHLLS 221 (698)
T ss_pred HHHHHHHHHhc-ccCcCCH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55555443321 1111111 1222223322 34445556766777666
No 153
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.10 E-value=2.7 Score=41.30 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=113.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc--cCchHHHHHhcccCCHHHHHHHHHHHHHhccC---chhhhHHH
Q 012404 267 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT---HENKARAV 341 (464)
Q Consensus 267 Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~---~~~~~~iv 341 (464)
.+..+...+...|+.+...|..+....-....+.. .-+++.+...++.+..+-+..|+.++.-|+.. .+....++
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 45556667789999999999888765433333322 34677888888888767777788888777755 24445555
Q ss_pred hcCcHHHHHHHHcCC----chHHHHHHHHHHhh---CC-HHHHHHHHhcCcHHHHH--HHHhcc---------CChhHHH
Q 012404 342 RDGGVSVILKKIMDG----VHVDELLAILAMLS---TN-HRAVEEIGDLGGVSCML--RIIRES---------TCDRNKE 402 (464)
Q Consensus 342 ~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~---~~-~~~~~~i~~~g~i~~Lv--~ll~~~---------~~~~~~~ 402 (464)
+ ...|.|.+.+.++ ..+..++.+|+.++ .. ++......+. +..+. ..++.+ .++.+..
T Consensus 128 ~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~--le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 128 E-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMES--LESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred H-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHH--HHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 4 4788899988865 23344554555544 32 2222211111 22111 112211 1234556
Q ss_pred HHHHHHHHHhccCh-hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 403 NCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 403 ~A~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
.|+.+-..|...-+ ....... ...++.|..++++.+..++-.|...|..+-+.
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 66555555554433 2334443 35789999999999999999999999887543
No 154
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.04 E-value=0.49 Score=43.95 Aligned_cols=150 Identities=17% Similarity=0.112 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hHHHHhcCCCChHHHH
Q 012404 190 EAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLM 268 (464)
Q Consensus 190 ~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv 268 (464)
.|+..+..++. +++.|..+.+ +.+--.|-.+|..... +...+-.+-.++.+|..|.+.++ ....+....+++|..+
T Consensus 98 naL~LlQcvAS-HpdTr~~FL~-A~iPlylYpfL~Tt~~-~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 98 NALALLQCVAS-HPDTRRAFLR-AHIPLYLYPFLNTTSK-SRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHhc-CcchHHHHHH-ccChhhhHHhhhcccc-CCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 44444444554 8899888887 5544445566653321 12345677889999999988776 3333344457999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc----cCch----H-HHHHhcccCCHHHHHHHHHHHHHhccCchhhhH
Q 012404 269 DALRSGTIETRSNAAAALFTLSALDSNKEVIGK----SGAL----K-PLIDLLDEGHQSAMKDVASAIFNLCITHENKAR 339 (464)
Q Consensus 269 ~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~----~g~i----~-~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~ 339 (464)
+.++.|+...+..|+..+..+..+|..-..+.. -.+| . .+..+.+.+++...+.++++..+|+.++..|..
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999888887766544433 1122 2 223344557999999999999999999887765
Q ss_pred HHh
Q 012404 340 AVR 342 (464)
Q Consensus 340 iv~ 342 (464)
+..
T Consensus 255 L~~ 257 (293)
T KOG3036|consen 255 LRS 257 (293)
T ss_pred HHh
Confidence 543
No 155
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.016 Score=57.00 Aligned_cols=44 Identities=32% Similarity=0.628 Sum_probs=38.9
Q ss_pred ccCccchhhccC---cccCCCCccccHHHHHHHHHcCC--CCCCCCccc
Q 012404 84 FKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGN--RTCPRTQQV 127 (464)
Q Consensus 84 f~CPi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~--~~~P~~~~~ 127 (464)
|.|||..+--.| |+.++|||...|.+|-+-..+|. ..||.|...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 799999999877 89999999999999999998876 569998554
No 156
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.98 Score=47.21 Aligned_cols=222 Identities=17% Similarity=0.110 Sum_probs=139.4
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS 294 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 294 (464)
.+..|+.-+. +.++.+++.....|..+....+.... ..+.+.+.+++..+....+..++..+..+....
T Consensus 97 ~~~~~~~~~~------tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~- 165 (569)
T KOG1242|consen 97 IIEILLEELD------TPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL- 165 (569)
T ss_pred HHHHHHHhcC------CCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-
Confidence 4555666665 55677777776666655433322111 125677888888888888989988888887643
Q ss_pred chhhhcccCchHHHHHhcccCCH-HHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc---CC--chHHHHHHHHHH
Q 012404 295 NKEVIGKSGALKPLIDLLDEGHQ-SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM---DG--VHVDELLAILAM 368 (464)
Q Consensus 295 ~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~---~~--~~~~~a~~~L~~ 368 (464)
.-..+.+.+.+..|-..+.+... ..++.++-+.-.++..-. ...+...+|.+..++. +. .+++.|..+...
T Consensus 166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ka 242 (569)
T KOG1242|consen 166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKA 242 (569)
T ss_pred HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHH
Confidence 23445566778888887766422 233333333332322211 3344556666666654 32 566666666665
Q ss_pred hhCC--HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHH
Q 012404 369 LSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK 446 (464)
Q Consensus 369 L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~ 446 (464)
+..+ +.+.+.+ ++.++.-+... .=+.+.+++..|..++...+....... ..+++.+.+.+.+-.+++++.
T Consensus 243 i~~~~~~~aVK~l-----lpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~l--p~iiP~lsevl~DT~~evr~a 314 (569)
T KOG1242|consen 243 IMRCLSAYAVKLL-----LPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCL--PDLIPVLSEVLWDTKPEVRKA 314 (569)
T ss_pred HHHhcCcchhhHh-----hhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHH--hHhhHHHHHHHccCCHHHHHH
Confidence 5442 2222222 23333333222 236789999999999998886654444 589999999999999999999
Q ss_pred HHHHHHHHhccc
Q 012404 447 ATGILERLKRTV 458 (464)
Q Consensus 447 A~~~L~~l~~~~ 458 (464)
+...|..+..+-
T Consensus 315 ~~~~l~~~~svi 326 (569)
T KOG1242|consen 315 GIETLLKFGSVI 326 (569)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 157
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.96 E-value=0.32 Score=52.74 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=77.2
Q ss_pred CCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHH
Q 012404 231 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 310 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 310 (464)
+.++.++..|++++..+-. ..+.+ .+++.+.+.+.++++.+|+.|+-++.++=..+ +....+.|.+..+..
T Consensus 103 d~N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~ 173 (757)
T COG5096 103 DPNEEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKE 173 (757)
T ss_pred CCCHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHH
Confidence 6789999999999876522 22332 36888999999999999999999999887543 456667899999999
Q ss_pred hcccCCHHHHHHHHHHHHHhccC
Q 012404 311 LLDEGHQSAMKDVASAIFNLCIT 333 (464)
Q Consensus 311 lL~~~~~~~~~~al~aL~~L~~~ 333 (464)
++.+.+|.+..+|+.+|..+...
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999999988755
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.91 E-value=1.1 Score=49.55 Aligned_cols=158 Identities=16% Similarity=0.071 Sum_probs=111.3
Q ss_pred hhhHHHHHHhhcCCchhHHHHHHHH-H-HHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSATLPDQTEAAKEL-R-LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~~~~~~~a~~~L-~-~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
-|.+|..++.|.++..+.+..+.-| . -|+. ++.++.-+.+ .++-...+..|..+. .-+++-+..|+-+|..+.
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvK-e~g~~YF~~vL~~~~---~~~~EqrtmaAFVLAviv 585 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVK-ENGYKYFLQVLDPSQ---AIPPEQRTMAAFVLAVIV 585 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHh-ccCceeEEEEecCcC---CCCHHHHHHHHHHHHHHH
Confidence 4677888999977744443333332 2 3455 5777777777 678888888888532 223455555555666555
Q ss_pred cCcchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcccCCHHHHHHHHHH
Q 012404 249 IHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 326 (464)
Q Consensus 249 ~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 326 (464)
.+-...+.-.-.++.+......|.++ .+-.+.=.+-+|..|-.+ +.++..=.+.++.+.|+.+|+++.++++.+|+-|
T Consensus 586 ~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA 665 (1387)
T KOG1517|consen 586 RNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA 665 (1387)
T ss_pred cccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence 54332222233446777778888886 467788888899999875 5666666678999999999999999999999999
Q ss_pred HHHhccC
Q 012404 327 IFNLCIT 333 (464)
Q Consensus 327 L~~L~~~ 333 (464)
|..+..+
T Consensus 666 Lgtfl~~ 672 (1387)
T KOG1517|consen 666 LGTFLSN 672 (1387)
T ss_pred HHHHhcc
Confidence 9998774
No 159
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.013 Score=55.81 Aligned_cols=52 Identities=27% Similarity=0.432 Sum_probs=44.2
Q ss_pred CCCcccCccchhhccCcccCC-CCccccHHHHHHHHHcCCCCCCCCcccccCCC
Q 012404 80 CPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 132 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 132 (464)
.|+.-.||+|..--.+|..+. +|..||-.||-++..+ .++||+|+-|.+-++
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~ 349 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDH 349 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHH
Confidence 456678999999988887776 7999999999999996 789999998876543
No 160
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.79 E-value=0.72 Score=43.48 Aligned_cols=139 Identities=10% Similarity=0.096 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHhccC-chhhhHHH-hcCcHHHHHHHHcC-------C-------chHHHHHHHHHHhhCCHHHHHHH
Q 012404 316 HQSAMKDVASAIFNLCIT-HENKARAV-RDGGVSVILKKIMD-------G-------VHVDELLAILAMLSTNHRAVEEI 379 (464)
Q Consensus 316 ~~~~~~~al~aL~~L~~~-~~~~~~iv-~~g~v~~Lv~lL~~-------~-------~~~~~a~~~L~~L~~~~~~~~~i 379 (464)
+++.++.|+.-|+.--.. ++-...+- ..|.+..|++-+-+ + +-.-.|+++|..++++|+.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 566777777666543322 23333333 34888887764432 1 22345888888999999999999
Q ss_pred HhcCcHHHHHHHHhccC----ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 380 GDLGGVSCMLRIIREST----CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 380 ~~~g~i~~Lv~ll~~~~----~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
.++...--|.-+|.... .+..+-..++++..|...+....-..+.+...++...+.++.|++..|.-|..|+..+
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99986555555665421 2566677899999999877665556666789999999999999999999999999865
No 161
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.72 E-value=0.011 Score=58.17 Aligned_cols=35 Identities=29% Similarity=0.613 Sum_probs=31.4
Q ss_pred CcccCccchhhccCcccCCCCccccHHHHHHHHHc
Q 012404 82 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 116 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~ 116 (464)
+++.||||+..++||+++||||+.||.|-...+..
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 58899999999999999999999999998766553
No 162
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.61 E-value=0.24 Score=44.97 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=71.4
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCC-CC--hHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP-MV--IPLLMDALRSGTIETRSNAAAALFTL 289 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~-~~--i~~Lv~lL~~~~~~~~~~aa~~L~~L 289 (464)
...+..|+..+..|.........-....+.++.|+|..++.|..+.... +. +..|+.++++.+..-|..++.+|.|+
T Consensus 51 ~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 51 GFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence 3467888888876432112235567788999999999999999888654 33 56677777788888899999999999
Q ss_pred cccCcchhhhccc---CchHHHHHhc
Q 012404 290 SALDSNKEVIGKS---GALKPLIDLL 312 (464)
Q Consensus 290 s~~~~~~~~i~~~---g~i~~Lv~lL 312 (464)
|...+....+... ++++.|+--|
T Consensus 131 cFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 131 CFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred hccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9987666665553 4445444433
No 163
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.60 E-value=3.4 Score=45.56 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=107.1
Q ss_pred HHHHhhcC---CchhHHHHHHHHHHHhhcCchh-hhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 176 SLLKKMSA---TLPDQTEAAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 176 ~Lv~~Ls~---~~~~~~~a~~~L~~L~~~~~~~-r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
..++.|.. +.++++.|+.++..+....-++ +..+ ...++.|++-|+ +..++-.|+.++..++...
T Consensus 572 ~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL---~~~L~il~eRl~--------nEiTRl~AvkAlt~Ia~S~ 640 (1233)
T KOG1824|consen 572 CTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL---PRTLPILLERLG--------NEITRLTAVKALTLIAMSP 640 (1233)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHh--------chhHHHHHHHHHHHHHhcc
Confidence 34555543 2566777777777655422111 1111 235666777776 3567778888887775544
Q ss_pred c--hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc--chhhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 252 N--NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 252 ~--~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
- +...+.. .+++.+...++......+.....++-.|..+.. ...... .-++..+-.|+...+..+...|+..|
T Consensus 641 l~i~l~~~l~--~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L 717 (1233)
T KOG1824|consen 641 LDIDLSPVLT--EILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFL 717 (1233)
T ss_pred ceeehhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 2 3333332 368888999988777777777777777765431 111111 22445556667767888999999999
Q ss_pred HHhccCchhhhHHHhcCcHHHHHHHHcCCchHH
Q 012404 328 FNLCITHENKARAVRDGGVSVILKKIMDGVHVD 360 (464)
Q Consensus 328 ~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~ 360 (464)
..+........--+..-.++.++.+++++-++-
T Consensus 718 ~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg 750 (1233)
T KOG1824|consen 718 TTLAIIQPSSLLKISNPILDEIIRLLRSPLLQG 750 (1233)
T ss_pred HHHHhcccHHHHHHhhhhHHHHHHHhhCccccc
Confidence 999887765555556677888888888874333
No 164
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=6.8 Score=42.02 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=68.3
Q ss_pred chHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHh
Q 012404 304 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD 381 (464)
Q Consensus 304 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~ 381 (464)
++..|-.++.+.++..+--++.|++-+...+.- .|++ --..+++.|.+. .++-.|+..|.-+......+ +|
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~-eI-- 372 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKKNLM-EI-- 372 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHH-HH--
Confidence 456666777777888888888888888765431 2211 123566777754 78899999998887543322 22
Q ss_pred cCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh
Q 012404 382 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA 436 (464)
Q Consensus 382 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll 436 (464)
+..|+.-+........+..-+.-+-.+|+.+. +..+..-+=.+..|+.|.
T Consensus 373 ---Vk~LM~~~~~ae~t~yrdell~~II~iCS~sn--Y~~ItdFEWYlsVlveLa 422 (877)
T KOG1059|consen 373 ---VKTLMKHVEKAEGTNYRDELLTRIISICSQSN--YQYITDFEWYLSVLVELA 422 (877)
T ss_pred ---HHHHHHHHHhccchhHHHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHHH
Confidence 23344222222223445444444445666543 334443334455666654
No 165
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.39 E-value=0.023 Score=57.37 Aligned_cols=54 Identities=26% Similarity=0.419 Sum_probs=45.4
Q ss_pred CcccCccchhhccCcccCCCCccccHHHHHHHHH----cCCCCCCCCcccccCCCCcc
Q 012404 82 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLK----AGNRTCPRTQQVLSHTILTP 135 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~----~~~~~~P~~~~~l~~~~l~~ 135 (464)
++..|.+|.+.-.||+...|.|+|||-||.+|.. +.+-+||.|-.+++.+.-.|
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 4578999999999999999999999999988875 23568999999888764433
No 166
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.028 Score=51.65 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=41.9
Q ss_pred CCcccCccchhhccCcc----cCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCc
Q 012404 81 PEEFKCPLSKELMRDPV----ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 134 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv----~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 134 (464)
-..|.|||++-.|.+-. +-+|||.|.-+.+++.-. .+|++|++++..++++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeE
Confidence 34699999999998864 568999998888877653 4799999999887754
No 167
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=0.85 Score=48.88 Aligned_cols=240 Identities=15% Similarity=0.157 Sum_probs=133.3
Q ss_pred hHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
-++.+++.+.. +.+.+.-.-..|.+.++..+... .+++..++.=.. ++++.++..|++.+..+-.+.
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~------d~np~iR~lAlrtm~~l~v~~ 117 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCE------DPNPLIRALALRTMGCLRVDK 117 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH------HhhhhhhhccCC------CCCHHHHHHHhhceeeEeehH
Confidence 34555555532 23333333334555555433321 244444444433 667889888888876654322
Q ss_pred chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 252 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 252 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
+.+ .....|.+.++++++.+|..++..+.++= +.+.......|.++.|-+++.+.++.+..+|+.+|..+.
T Consensus 118 -----i~e--y~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 118 -----ITE--YLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred -----HHH--HHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 222 24555888999999999998876666554 455677778999999999999889999999999999998
Q ss_pred cCchhh-hHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCC-H-HHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHH
Q 012404 332 ITHENK-ARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN-H-RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 408 (464)
Q Consensus 332 ~~~~~~-~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L 408 (464)
..+.+. .--+..-.+..++..+.. -....-+.+|..++.. + +.+++. ..+..+...+++.. ..+.-.++.++
T Consensus 189 e~~~~~~~~~l~~~~~~~lL~al~e-c~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n-~avvlsavKv~ 263 (734)
T KOG1061|consen 189 ESHPSVNLLELNPQLINKLLEALNE-CTEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHAN-SAVVLSAVKVI 263 (734)
T ss_pred HhCCCCCcccccHHHHHHHHHHHHH-hhhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCC-cceEeehHHHH
Confidence 765431 111111122233332221 1222334455555543 1 111111 11334445555443 55666666666
Q ss_pred HHHhccChhhHHHHHHhhccHHHHHHHhhcCC
Q 012404 409 HTICLSDRTKWKAMREEESTHGTISKLAQDGT 440 (464)
Q Consensus 409 ~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~ 440 (464)
..+...-......+. ....++|+.++....
T Consensus 264 l~~~~~~~~~~~~~~--~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 264 LQLVKYLKQVNELLF--KKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHHHHHHHHHH--HHhcccceeeecccc
Confidence 666655443211222 244555555554443
No 168
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.14 E-value=1.9 Score=41.78 Aligned_cols=219 Identities=13% Similarity=0.072 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHH
Q 012404 187 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPL 266 (464)
Q Consensus 187 ~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~ 266 (464)
.+.-|++.+.++.. .++.|..+-....+-..++.+++++. .+.+.|-+.+-.+.-|+..+.....+-.....+.-
T Consensus 165 Trlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~v----g~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 165 TRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYV----GVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhh----hhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45567778888877 56666655442556677888888653 35678888888888888888766555444345677
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHhcccCcchhhhcc---cCchHHHHHhcccC---CHHHHHHHHH---H----------
Q 012404 267 LMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGK---SGALKPLIDLLDEG---HQSAMKDVAS---A---------- 326 (464)
Q Consensus 267 Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~---~g~i~~Lv~lL~~~---~~~~~~~al~---a---------- 326 (464)
|+.+.+... ..+.+-+++.+.+++. ...+..|.. .|-+..-+++|... +.+.+..--. .
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 788887763 5566777788888876 223344433 45566667777553 3222211100 0
Q ss_pred ----HH-----HhccCc---------hhhhHHHhc--CcHHHHHHHHcCC--c-hHHHHHHHHHHhhC-CHHHHHHHHhc
Q 012404 327 ----IF-----NLCITH---------ENKARAVRD--GGVSVILKKIMDG--V-HVDELLAILAMLST-NHRAVEEIGDL 382 (464)
Q Consensus 327 ----L~-----~L~~~~---------~~~~~iv~~--g~v~~Lv~lL~~~--~-~~~~a~~~L~~L~~-~~~~~~~i~~~ 382 (464)
+. -|+.++ .|-.++.+. ..+..|.++++.. + ....|+.=+..+.. .||++..+...
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky 398 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY 398 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence 00 112111 133334432 4688999999854 2 44456666666665 59999999999
Q ss_pred CcHHHHHHHHhccCChhHHHHHHHHHHHHh
Q 012404 383 GGVSCMLRIIRESTCDRNKENCIAILHTIC 412 (464)
Q Consensus 383 g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~ 412 (464)
|+=..+.+++.+++ ++++-.|+.++..+-
T Consensus 399 g~k~~im~L~nh~d-~~VkfeAl~a~q~~i 427 (432)
T COG5231 399 GVKEIIMNLINHDD-DDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHhcCCC-chhhHHHHHHHHHHH
Confidence 99999999999765 999999999987653
No 169
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.04 E-value=1.3 Score=46.48 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=87.3
Q ss_pred HHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 174 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 174 i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
+..++..|.+ ++..+..|+.....+++- -.+ .++ ...+..|-.+|-.... ..++++.-..+.++..+-....
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~v-lk~---c~e-~~~l~klg~iLyE~lg--e~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKV-LKA---CGE-TKELAKLGNILYENLG--EDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHh---cch-HHHHHHHhHHHHHhcC--cccHHHHHHHHHHHHHHhhhhc
Confidence 4445556654 366777777776666651 110 011 1111222222222111 4567777776666665532222
Q ss_pred hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc-cCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 253 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 253 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
.+..---..+.+|.|..+|++....+..+....+..++.......-..+ --.--.|+++|.+-+.+.+.+|..++..++
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 1111011236899999999999999999999989888876533211111 112235788888888999999988888765
No 170
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.01 E-value=0.46 Score=37.98 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh
Q 012404 359 VDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 437 (464)
Q Consensus 359 ~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~ 437 (464)
+..++..|..++.. +.......+ -.++.++..+... +.+++..|+.+|.+++....+..-.-+ ..+...|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc
Confidence 34456666666653 222222222 2477778888754 599999999999999987654422222 356778888888
Q ss_pred cCCHHHHHHHHHHHHHHh
Q 012404 438 DGTARAKRKATGILERLK 455 (464)
Q Consensus 438 ~g~~~~k~~A~~~L~~l~ 455 (464)
+.++.+|..|..+-+.|+
T Consensus 79 D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAAELLDRLLK 96 (97)
T ss_pred CCchhHHHHHHHHHHHhc
Confidence 888888888876666654
No 171
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.01 E-value=0.21 Score=39.98 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=51.3
Q ss_pred cCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHh--cCcHHHHHHHHcCC-chHHHHHHHHHHhhC
Q 012404 302 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMDG-VHVDELLAILAMLST 371 (464)
Q Consensus 302 ~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~--~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~ 371 (464)
.-.+++++..+.+.+.+++..|+.+|+|++....+ .++. ......|.+++.+. .-...++..|.+|-+
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 35689999999999999999999999999865433 3332 35777888888876 456667788777653
No 172
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.97 E-value=0.025 Score=49.90 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=39.5
Q ss_pred ccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 84 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
|.|-||..-++.||++.|||.||-.|..+-... ...|-+|+....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 999999999999999999999999998887776 578988877543
No 173
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.83 E-value=1 Score=42.51 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hHHHHhcCCCChHHHH
Q 012404 190 EAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLM 268 (464)
Q Consensus 190 ~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv 268 (464)
.|+..+..++. +++.|..+.+ +...--|..+|+.... ...-+..+-..+.++..|.+.++ ....+.-..+++|..+
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~-a~iplyLyPfL~tt~k-~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLK-AHIPLYLYPFLNTTSK-TRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHH-TTGGGGGHHHHH-----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHH-cCchhhehhhhhcccc-ccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 45555566666 8999999999 7777777888864321 00013456677888888887654 3344444557999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc--------cCchHHHHH-hcccCCHHHHHHHHHHHHHhccCchhhhH
Q 012404 269 DALRSGTIETRSNAAAALFTLSALDSNKEVIGK--------SGALKPLID-LLDEGHQSAMKDVASAIFNLCITHENKAR 339 (464)
Q Consensus 269 ~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~~~~~~ 339 (464)
+.++.|+.-.+..|.-.+..+-.++..-..+.+ ..++..+|. +...++++..+...++-..|+.++..|..
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a 225 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA 225 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999988887765555543 122233332 33446889999999999999999988776
Q ss_pred HHh
Q 012404 340 AVR 342 (464)
Q Consensus 340 iv~ 342 (464)
+.+
T Consensus 226 L~~ 228 (262)
T PF04078_consen 226 LRQ 228 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 174
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.74 E-value=1.1 Score=44.95 Aligned_cols=236 Identities=17% Similarity=0.175 Sum_probs=128.4
Q ss_pred hhhHHHHHHhhcC--CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHH-HHcc
Q 012404 171 RDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITT-LLNL 247 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~-L~~L 247 (464)
.+-+..+++.+++ +...|..++-.|..-+. ++..|..+.. .|.+..++..+.... .++ ...-+..+ ++-+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra-~g~~~~l~~~l~~~~----~d~-~~~l~~a~i~~~l 92 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRA-HGLVKRLFKALSDAP----DDD-ILALATAAILYVL 92 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHH-cCcHHHHHHHhcccc----chH-HHHHHHHHHHHHH
Confidence 3457778888863 36678888888888888 7899999999 899999999996432 222 33333333 4444
Q ss_pred ccCcchHHHHhcCCCChHHHHHHHh--cC-CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcc---------cC
Q 012404 248 SIHDNNKKLVAETPMVIPLLMDALR--SG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD---------EG 315 (464)
Q Consensus 248 s~~~~~~~~i~~~~~~i~~Lv~lL~--~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---------~~ 315 (464)
+.+..+-..+ ...+....++.++. .. +...... .....+-.++. .+.+.....++. ..
T Consensus 93 ~~d~~~~~l~-~~~~~~~ll~~Ll~~~~~~~~~~~~~--------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (361)
T PF07814_consen 93 SRDGLNMHLL-LDRDSLRLLLKLLKVDKSLDVPSDSD--------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPP 162 (361)
T ss_pred ccCCcchhhh-hchhHHHHHHHHhccccccccccchh--------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCc
Confidence 4444333332 33345666677776 11 0000000 00000000000 011111111110 01
Q ss_pred CHHHHHHHHHHHHHhc--------c------C-chhhhHHHhcCcHHHHHHHHcC----C--------------chHHHH
Q 012404 316 HQSAMKDVASAIFNLC--------I------T-HENKARAVRDGGVSVILKKIMD----G--------------VHVDEL 362 (464)
Q Consensus 316 ~~~~~~~al~aL~~L~--------~------~-~~~~~~iv~~g~v~~Lv~lL~~----~--------------~~~~~a 362 (464)
...-+.-|+.+|..++ . . +.-+.++.+.|++..+++++.+ . ...+.+
T Consensus 163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~c 242 (361)
T PF07814_consen 163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERC 242 (361)
T ss_pred ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHH
Confidence 1223444555555553 0 0 1125556677899999998751 0 135668
Q ss_pred HHHHHHhhCC-HHHHHHHHhc--CcHHHHH-HHHhcc--CChhHHHHHHHHHHHHhccChhhHHHHH
Q 012404 363 LAILAMLSTN-HRAVEEIGDL--GGVSCML-RIIRES--TCDRNKENCIAILHTICLSDRTKWKAMR 423 (464)
Q Consensus 363 ~~~L~~L~~~-~~~~~~i~~~--g~i~~Lv-~ll~~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~~ 423 (464)
+.+|.+.+.. ++++..+... +....+. .+++.. ........+++++.|++.+++..+.++.
T Consensus 243 l~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~ 309 (361)
T PF07814_consen 243 LSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA 309 (361)
T ss_pred HHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh
Confidence 8999998875 4566666544 3333333 333321 1133457899999999999987665554
No 175
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.71 E-value=0.61 Score=44.14 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh
Q 012404 359 VDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 437 (464)
Q Consensus 359 ~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~ 437 (464)
...|+.+|.-+|- +|..+..+.+..++..|+.++....++.++.+++.+|..+...++.+.+ .+++.+++..+..++.
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r-~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR-DFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH-HHHHhCCHHHHHHHHc
Confidence 3446677777776 6889999999999999999996555689999999999999998887754 6667899999999986
Q ss_pred cC--CHHHHHHHHHHHHHH
Q 012404 438 DG--TARAKRKATGILERL 454 (464)
Q Consensus 438 ~g--~~~~k~~A~~~L~~l 454 (464)
+. +..+|-|....|--+
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 65 556899998888644
No 176
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.71 E-value=0.98 Score=48.60 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=132.8
Q ss_pred HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHH-hcccCcchhhhcccCchHHHHHhcccC-CHHHHHHHHHHHHHhc
Q 012404 254 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFT-LSALDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLC 331 (464)
Q Consensus 254 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~ 331 (464)
+...+. .|+...|+.+......+++.....+|.. +..... + ....++++...+... ..-....++.++.||+
T Consensus 497 ~~~~Ik-~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 497 RAKKIK-PGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred cCcccc-ccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 334443 3578888888888888888888887772 111111 0 134566666666554 2233567899999999
Q ss_pred cCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHH-Hhc-CcHHHHHHHHhccCChhHHHHHHH
Q 012404 332 ITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI-GDL-GGVSCMLRIIRESTCDRNKENCIA 406 (464)
Q Consensus 332 ~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i-~~~-g~i~~Lv~ll~~~~~~~~~~~A~~ 406 (464)
+.. ..|.++++.-+++.+-.++... ..+..++..+.||..++..-+.. ++. ...+-....+.. ..++....+++
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-hhhHHhhhccc
Confidence 866 5788888887777666666543 57888999999999998865554 443 345555555554 33777778888
Q ss_pred HHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 407 ILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 407 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
++..++.....++..+..-..+...+..+.++++..+|.....+..|+
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL 697 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence 888787777666654444456888899999999999888877766654
No 177
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=93.61 E-value=0.21 Score=40.13 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hHHHHh
Q 012404 188 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVA 258 (464)
Q Consensus 188 ~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~ 258 (464)
+...+..|.+++..++.++..+.+ .|+|+.+++...-. ..+|-++|-|+.+|+||..+.. |+..|.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD----~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNID----DHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCC----cccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 456788899999999999999999 89999999987643 5589999999999999987764 555554
No 178
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=4.1 Score=45.41 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=149.4
Q ss_pred HHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh
Q 012404 193 KELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR 272 (464)
Q Consensus 193 ~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~ 272 (464)
..|..+-+.+.+|...+.+ ..++..++.++-+ .+-+...+.++.-|...+..+.. +.-+-.+|+.|+
T Consensus 664 DcLisllKnnteNqklFre-anGvklilpflin--------dehRSslLrivscLitvdpkqvh----hqelmalVdtLk 730 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFRE-ANGVKLILPFLIN--------DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLK 730 (2799)
T ss_pred HHHHHHHhccchhhHHHHh-hcCceEEEEeeec--------hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHH
Confidence 3466677778899999998 8888888888863 23344455555555443322110 012445788887
Q ss_pred cCCH------------HHHHHHHHHHHHhcc-cCcchhhhcccCchHHHHHhccc----------CCHHHHHHHHHHHH-
Q 012404 273 SGTI------------ETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDE----------GHQSAMKDVASAIF- 328 (464)
Q Consensus 273 ~~~~------------~~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~al~aL~- 328 (464)
+|-. .......++++.+.. +...+..++++|++..|...|.. ++.-+-..-...|+
T Consensus 731 sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFr 810 (2799)
T KOG1788|consen 731 SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFR 810 (2799)
T ss_pred hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHH
Confidence 7521 345556667777764 44667788899999998887742 12222222333333
Q ss_pred --H--hccCchhhhHHH-------------hcC---------cHHHHHHHH----cCCchHH--HHHHHHHHhhC-----
Q 012404 329 --N--LCITHENKARAV-------------RDG---------GVSVILKKI----MDGVHVD--ELLAILAMLST----- 371 (464)
Q Consensus 329 --~--L~~~~~~~~~iv-------------~~g---------~v~~Lv~lL----~~~~~~~--~a~~~L~~L~~----- 371 (464)
. +|.+..|+..+- ..| +|..|.++- ..+.+.. .|+.-+-.+-.
T Consensus 811 lfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifav 890 (2799)
T KOG1788|consen 811 LFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAV 890 (2799)
T ss_pred HHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeee
Confidence 2 344455655421 112 122222211 0111111 12222222211
Q ss_pred ----C--HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh---hcCCHH
Q 012404 372 ----N--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA---QDGTAR 442 (464)
Q Consensus 372 ----~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll---~~g~~~ 442 (464)
+ ...++.+..+|++..|...+-.. +++.+-.-+.+|..++..++.. ++.....|.++.|.++. .+|+..
T Consensus 891 ntPsGqfnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfn-aelltS~gcvellleIiypflsgssp 968 (2799)
T KOG1788|consen 891 NTPSGQFNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFN-AELLTSAGCVELLLEIIYPFLSGSSP 968 (2799)
T ss_pred ccCCCCcCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCc-hhhhhcccHHHHHHHHhhhhhcCCch
Confidence 1 23456788899999999776643 5999999999999999988765 45565678888888874 677777
Q ss_pred HHHHHHHHHHHHhcc
Q 012404 443 AKRKATGILERLKRT 457 (464)
Q Consensus 443 ~k~~A~~~L~~l~~~ 457 (464)
.-..|..|+..|+-.
T Consensus 969 fLshalkIvemLgay 983 (2799)
T KOG1788|consen 969 FLSHALKIVEMLGAY 983 (2799)
T ss_pred HhhccHHHHHHHhhc
Confidence 777888888877644
No 179
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.48 E-value=1.2 Score=46.06 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=106.3
Q ss_pred CchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCc------hHHHHHHHHHHhhCCHHHH
Q 012404 303 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV------HVDELLAILAMLSTNHRAV 376 (464)
Q Consensus 303 g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~------~~~~a~~~L~~L~~~~~~~ 376 (464)
.....+.+++.+++...+..|+.-|..|+........+++..++..|..++.++. +...++.++..+-.+.-..
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 3456678889899888888899999999999998999999999999999998763 2333444444443321100
Q ss_pred HHHHhcCcHHHHHHHHhc-cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 377 EEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~ll~~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
=..+...+|.....++.. -....+-..|+..|-++...+.... ..+.++--++.|+..++.++.+++.+|..++..|-
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~-~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLR-QLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHH-HHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 001112233333333321 1125667889999999998887553 45556789999999999999999999888887553
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.46 E-value=3.2 Score=46.24 Aligned_cols=215 Identities=12% Similarity=0.082 Sum_probs=140.5
Q ss_pred HHHHHHHccccCcch---HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHh-cccCcchhhhcccCchHHHHHhccc
Q 012404 239 DVITTLLNLSIHDNN---KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL-SALDSNKEVIGKSGALKPLIDLLDE 314 (464)
Q Consensus 239 ~A~~~L~~Ls~~~~~---~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~L-s~~~~~~~~i~~~g~i~~Lv~lL~~ 314 (464)
+-+++|.-|+..-+- ...+.-+=|+.|-++++|++...+.|---+-.=..+ +.++..+..+++.++-.-.+..|..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 344555555544331 222222337899999999999888887665444444 4445556677776666666666665
Q ss_pred -C--CHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHH-HhcCcHH
Q 012404 315 -G--HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEI-GDLGGVS 386 (464)
Q Consensus 315 -~--~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i-~~~g~i~ 386 (464)
. +++-+..|+-+|..++.+- -++....+.+.+..-++.|.++ -++.=++-.|..|=.+-+..+.. .+.++..
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 2 5677778888888888765 4666677888899888888874 23444677777776664433344 5668899
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHhccC----hhhHHHH-----------HHhhccH---HHHHHHhhcCCHHHHHHHH
Q 012404 387 CMLRIIRESTCDRNKENCIAILHTICLSD----RTKWKAM-----------REEESTH---GTISKLAQDGTARAKRKAT 448 (464)
Q Consensus 387 ~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~----~~~~~~~-----------~~~~g~~---~~L~~Ll~~g~~~~k~~A~ 448 (464)
+|..+|... .++++..|+-+|..+-.+. ++....+ ..|.... -.++.+++.|++-++....
T Consensus 646 kL~~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 646 KLILLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 999999854 5999999999999987752 2221111 1111111 2566677888888777766
Q ss_pred HHHHHH
Q 012404 449 GILERL 454 (464)
Q Consensus 449 ~~L~~l 454 (464)
..|..+
T Consensus 725 v~ls~~ 730 (1387)
T KOG1517|consen 725 VALSHF 730 (1387)
T ss_pred HHHHHH
Confidence 666544
No 181
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=5.3 Score=43.26 Aligned_cols=249 Identities=11% Similarity=0.093 Sum_probs=121.3
Q ss_pred CCchhHHHHHHHHHHHhhcCchhhhhhhh---------cCCch----hhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 183 ATLPDQTEAAKELRLLTKRMPSFRALFGE---------SHDAI----PQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 183 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~---------~~g~i----~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
++...++.|+..|..+....+.|-+.++= ...++ ..+++.|+ +.|..++..|+..++.|.
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~------DpD~SIkrralELs~~lv- 378 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLK------DPDVSIKRRALELSYALV- 378 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHh-
Confidence 34566677777777666644444322210 01111 12334444 556677777777666553
Q ss_pred CcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcc--cCcchhhhcccCchHHHHHhcccC----CHHHHHHH
Q 012404 250 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA--LDSNKEVIGKSGALKPLIDLLDEG----HQSAMKDV 323 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~a 323 (464)
++.|...|+. .|+.+|.+.+.+.+...+.-+..++. .+++++.| ..+..+|... ++++..+-
T Consensus 379 n~~Nv~~mv~------eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~i------dtml~Vl~~aG~~V~~dv~~nl 446 (866)
T KOG1062|consen 379 NESNVRVMVK------ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHI------DTMLKVLKTAGDFVNDDVVNNL 446 (866)
T ss_pred ccccHHHHHH------HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHH------HHHHHHHHhcccccchhhHHHH
Confidence 3334444443 36777777777888888877777775 34555554 3344444332 22222222
Q ss_pred HHHHHHhccCchhhhHHHhc-CcHHHH-HHHHcCCchHHHHHHHHHHhhC---C---HHHHHHHHhcCcHHHHHHHHhc-
Q 012404 324 ASAIFNLCITHENKARAVRD-GGVSVI-LKKIMDGVHVDELLAILAMLST---N---HRAVEEIGDLGGVSCMLRIIRE- 394 (464)
Q Consensus 324 l~aL~~L~~~~~~~~~iv~~-g~v~~L-v~lL~~~~~~~~a~~~L~~L~~---~---~~~~~~i~~~g~i~~Lv~ll~~- 394 (464)
+..|.+=.... ......+. -++... ...+....+...|.|+|..-.. + .+.-..+-+..++..|.+++.+
T Consensus 447 l~LIa~~~~e~-~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~ 525 (866)
T KOG1062|consen 447 LRLIANAFQEL-HEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH 525 (866)
T ss_pred HHHHhcCCcch-hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc
Confidence 22222211100 00000000 000000 0011122445556666654331 1 1111112233456777777775
Q ss_pred cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 395 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 395 ~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
..+..++..|+.+|.-|+.+......++ -..+.....+-+-.+|++|.+.=..+.+.
T Consensus 526 ~s~~~tk~yal~Al~KLSsr~~s~~~ri------~~lI~~~~~s~~~elQQRa~E~~~l~~~~ 582 (866)
T KOG1062|consen 526 SSDSTTKGYALTALLKLSSRFHSSSERI------KQLISSYKSSLDTELQQRAVEYNALFAKD 582 (866)
T ss_pred cchHHHHHHHHHHHHHHHhhccccHHHH------HHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 2347888899999999998776431111 12233333444667888887766665443
No 182
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.35 E-value=0.48 Score=35.62 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhcc
Q 012404 359 VDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEEST 428 (464)
Q Consensus 359 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~ 428 (464)
...|++++.++++.+.+...+.+.+.++.++++........+|--|..+|..++..... .+++.+.|+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G--~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG--AEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH--HHHHHHcCC
Confidence 45699999999999999998888899999999999866688888999999988875532 356655554
No 183
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=6.9 Score=41.88 Aligned_cols=221 Identities=10% Similarity=0.066 Sum_probs=118.4
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc--hHHHHhcCCC
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN--NKKLVAETPM 262 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~--~~~~i~~~~~ 262 (464)
...+..|+-+|..|-+.+++.. -. .+....++.+|. +.+..+...+...+..+++..+ .+..+..
T Consensus 162 ~~vkqkaALclL~L~r~spDl~---~~-~~W~~riv~LL~------D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--- 228 (938)
T KOG1077|consen 162 DYVKQKAALCLLRLFRKSPDLV---NP-GEWAQRIVHLLD------DQHMGVVTAATSLIEALVKKNPESYKTCLPL--- 228 (938)
T ss_pred HHHHHHHHHHHHHHHhcCcccc---Ch-hhHHHHHHHHhC------ccccceeeehHHHHHHHHHcCCHHHhhhHHH---
Confidence 4556666667766666565542 22 467888899988 4455565566666655554332 2222111
Q ss_pred ChHHHHHHHhc-------------CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC--CHHHH-----HH
Q 012404 263 VIPLLMDALRS-------------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--HQSAM-----KD 322 (464)
Q Consensus 263 ~i~~Lv~lL~~-------------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~-----~~ 322 (464)
++..|..+... +.|=.+...+++|..+-..+++-....-..+.+.++...+++ +..++ ..
T Consensus 229 avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~na 308 (938)
T KOG1077|consen 229 AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNA 308 (938)
T ss_pred HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHH
Confidence 12222222211 122344455555555422222211111112233333333321 11111 11
Q ss_pred HHHHHHHhccC-chhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChh
Q 012404 323 VASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR 399 (464)
Q Consensus 323 al~aL~~L~~~-~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 399 (464)
.+--.-+|+.. +.....+.+ ++..|-++|.+. +++--|+..++.|+++.....++..+ ...++..|+...+..
T Consensus 309 VLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 11111233322 222222322 456677777754 77888999999999987777777766 677888888655688
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHH
Q 012404 400 NKENCIAILHTICLSDRTKWKAMRE 424 (464)
Q Consensus 400 ~~~~A~~~L~~L~~~~~~~~~~~~~ 424 (464)
++..|+.+|+.+|..+. .+.++.
T Consensus 385 irrravDLLY~mcD~~N--ak~IV~ 407 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVSN--AKQIVA 407 (938)
T ss_pred HHHHHHHHHHHHhchhh--HHHHHH
Confidence 99999999999998653 446664
No 184
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.27 E-value=1.9 Score=46.22 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=81.0
Q ss_pred CchhHHHHHHHHHHHhhcCchh--hhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCC
Q 012404 184 TLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETP 261 (464)
Q Consensus 184 ~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~ 261 (464)
+...+.+|+..+..++.--..+ -+.++. .|. .|-.-|. .+.+++.-..+.+|..+...-.--+..--..
T Consensus 812 sa~vRqqaadlis~la~Vlktc~ee~~m~~-lGv--vLyEylg------eeypEvLgsILgAikaI~nvigm~km~pPi~ 882 (1172)
T KOG0213|consen 812 SAKVRQQAADLISSLAKVLKTCGEEKLMGH-LGV--VLYEYLG------EEYPEVLGSILGAIKAIVNVIGMTKMTPPIK 882 (1172)
T ss_pred ChhHHHHHHHHHHHHHHHHHhccHHHHHHH-hhH--HHHHhcC------cccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence 3566777777776666511111 011222 222 2333333 4567776665555554421111000111122
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc-cCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
+.+|.|..+|++....+++++...+..++..........+ --.--.|+++|.+-+.+.+.+|..++..++
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 5899999999999999999999999999875432211111 112335788888888889999998888764
No 185
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=1.8 Score=46.70 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=49.1
Q ss_pred CchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012404 214 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 291 (464)
Q Consensus 214 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~ 291 (464)
+.+-.++..|++... +.+.-++--|+.+|.+++..+ +. ..+.|-+.++|++.++-+|+.|+-+...+-.
T Consensus 103 dvllLltNslknDL~--s~nq~vVglAL~alg~i~s~E-----ma--rdlapeVe~Ll~~~~~~irKKA~Lca~r~ir 171 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLN--SSNQYVVGLALCALGNICSPE-----MA--RDLAPEVERLLQHRDPYIRKKAALCAVRFIR 171 (866)
T ss_pred HHHHHHHHHHHhhcc--CCCeeehHHHHHHhhccCCHH-----Hh--HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444555566654332 556677888999998887644 22 2467888899999999999999888777654
No 186
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.17 E-value=5 Score=44.03 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcc
Q 012404 234 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD 313 (464)
Q Consensus 234 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~ 313 (464)
+-++..|++++....+. +...--.++++..|..+....+.++......+|...+..+.....-.+.-..|..+.+..
T Consensus 505 ~~~ki~a~~~~~~~~~~---~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYCKV---KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred CchhHHHHHHHHhccCc---eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 44555566655544311 111111234566677776667788888888999999888766666666777888877765
Q ss_pred c--CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC------chHHHHHHHHHHhhCC--HHHHHHHHhcC
Q 012404 314 E--GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG------VHVDELLAILAMLSTN--HRAVEEIGDLG 383 (464)
Q Consensus 314 ~--~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~--~~~~~~i~~~g 383 (464)
+ ++|.+...+-.++..|+....+..-+ ..-.+|.|+..|..+ ....-|+.+|..+..+ ++--..+...
T Consensus 582 k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~- 659 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQIAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY- 659 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-
Confidence 4 58888888888888888754443333 335799999999843 4566788888877664 2222333322
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhH
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW 419 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~ 419 (464)
+.+++.+..-++++..+-.+|-.+|..+-....+..
T Consensus 660 ~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~ 695 (1005)
T KOG2274|consen 660 AFPAVAKITLHSDDHETLQNATECLRALISVTLEQL 695 (1005)
T ss_pred HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHH
Confidence 467777666555557777888888888877665543
No 187
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.069 Score=50.45 Aligned_cols=47 Identities=17% Similarity=0.512 Sum_probs=37.8
Q ss_pred ccCccchhhc--cCcc-cCCCCccccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 84 FKCPLSKELM--RDPV-ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 84 f~CPi~~~~m--~dPv-~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
.-|-||+.-+ .|-+ .+||.|.|-+.||.+|+..-...||+||.++.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 5699998655 3443 689999999999999998545679999998754
No 188
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.10 E-value=0.21 Score=47.45 Aligned_cols=43 Identities=33% Similarity=0.651 Sum_probs=36.9
Q ss_pred ccCccchhhccC---cccCCCCccccHHHHHHHHHcCC--CCCCCCcc
Q 012404 84 FKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGN--RTCPRTQQ 126 (464)
Q Consensus 84 f~CPi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~--~~~P~~~~ 126 (464)
|+||+..+.-.| ||++.|||..-+.+..+--.+|. ..||.|..
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 899999999877 89999999999999988887764 35888854
No 189
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.068 Score=52.16 Aligned_cols=52 Identities=35% Similarity=0.436 Sum_probs=46.5
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcc
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTP 135 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~ 135 (464)
...|.+++..|.|||-++.|..||-..|--|+.. .++-|.++++++..+|++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence 3469999999999999999999999999999998 678899999988887764
No 190
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=7.5 Score=42.09 Aligned_cols=245 Identities=17% Similarity=0.163 Sum_probs=136.6
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcch---------HH
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN---------KK 255 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~---------~~ 255 (464)
.-...+|++++..+...+.+ .+. -++..|-.+++ +..+..+-.|+++|..++..... -.
T Consensus 259 emV~~EaArai~~l~~~~~r---~l~---pavs~Lq~fls------sp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 259 EMVIYEAARAIVSLPNTNSR---ELA---PAVSVLQLFLS------SPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHHHHHHHHHhhccccCHh---hcc---hHHHHHHHHhc------CcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 33456777777777653221 111 25556666666 44577888999999887653322 11
Q ss_pred HHhcCCC--ChHHHHHHHhcCCHHHHHHHHHHHHHhcc--cCcchhhhcc-------------cCchHHHHHhccc-CCH
Q 012404 256 LVAETPM--VIPLLMDALRSGTIETRSNAAAALFTLSA--LDSNKEVIGK-------------SGALKPLIDLLDE-GHQ 317 (464)
Q Consensus 256 ~i~~~~~--~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~--~~~~~~~i~~-------------~g~i~~Lv~lL~~-~~~ 317 (464)
.|...+. .-+.+..+|+.|+..........+.+... +++++..+++ .+.+..|..+|+. +.-
T Consensus 327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~ 406 (865)
T KOG1078|consen 327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGF 406 (865)
T ss_pred hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCc
Confidence 2222222 23456778888876666655555555443 2455544433 3445555555544 244
Q ss_pred HHHHHHHHHHHHhcc-CchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhcc
Q 012404 318 SAMKDVASAIFNLCI-THENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES 395 (464)
Q Consensus 318 ~~~~~al~aL~~L~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~ 395 (464)
+.+.....+|..... .++.|.. ++..|.+.+.+.....-+..+|..|-.. |.. ..-...+..+...+.=
T Consensus 407 e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~EgP~a---~~Pskyir~iyNRviL- 477 (865)
T KOG1078|consen 407 EFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGKEGPKA---PNPSKYIRFIYNRVIL- 477 (865)
T ss_pred hHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhccCCCC---CCcchhhHHHhhhhhh-
Confidence 555555555555443 2233322 4556666666666666677777666542 100 0001122233222211
Q ss_pred CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 396 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 396 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
.+..++..|+.+|..+....+.-. ..+.-.|.+-+.+.++.+++.|...|+++..
T Consensus 478 En~ivRaaAv~alaKfg~~~~~l~------~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFGAQDVVLL------PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCcc------ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 136788899999999885544221 2233345555677788999999999999873
No 191
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.83 E-value=11 Score=38.78 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHHccccCcc----hHHHHhcCCCChHHHHHHHhcCC------H-HHHHHHHHHHHHhcccCcchhhhccc
Q 012404 234 PNLQEDVITTLLNLSIHDN----NKKLVAETPMVIPLLMDALRSGT------I-ETRSNAAAALFTLSALDSNKEVIGKS 302 (464)
Q Consensus 234 ~~~~~~A~~~L~~Ls~~~~----~~~~i~~~~~~i~~Lv~lL~~~~------~-~~~~~aa~~L~~Ls~~~~~~~~i~~~ 302 (464)
.+-+-.|+-.+..+.++++ +|+.+.++- ..+.+-++|..++ + .-+.-+...|.-.+..++....----
T Consensus 25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAV-Gf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v 103 (698)
T KOG2611|consen 25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAV-GFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV 103 (698)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhHHHHh-ccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH
Confidence 3445556666666666665 577777764 3677778886432 2 34455566666667766543321112
Q ss_pred CchHHHHHhcccC-CHH------HHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCC
Q 012404 303 GALKPLIDLLDEG-HQS------AMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN 372 (464)
Q Consensus 303 g~i~~Lv~lL~~~-~~~------~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~ 372 (464)
..||.|...++.+ +++ +..++-.+|+..++.+.+...++..|+++.+-++-.-+ .-..-|+.++..+...
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~ 183 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSK 183 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHh
Confidence 4689999999764 333 88999999999999998999999999999998765433 2233344444444432
Q ss_pred ----HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 373 ----HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 373 ----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
++.-..+... |..+..=++..+ ...+-..+.+|..+-..
T Consensus 184 ~~cw~e~~~~flal--i~~va~df~~~~-~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 184 LDCWSETIERFLAL--IAAVARDFAVLH-NALKFELCHLLSAVLSS 226 (698)
T ss_pred cccCcCCHHHHHHH--HHHHHHHHHHhh-hHHHHHHHHHHHHHHhC
Confidence 3333333322 444444444333 56677778887755443
No 192
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.70 E-value=11 Score=37.50 Aligned_cols=194 Identities=11% Similarity=0.071 Sum_probs=133.5
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchh-----hhcccCchHHHHHhccc-CCHHHHHHHHHHHHHhccCc
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKE-----VIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITH 334 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~-----~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~ 334 (464)
+.+..|+..|..-+.++|+.++....++.... +++. .+.. ..-+.|..|+.. ++++..-.+-..|...+..+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 57888888888899999999999888887643 2222 2222 112333333332 26677777888888888887
Q ss_pred hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHh-hCCHHHHHHHHhcC---cHHHHHHHHhccCChhHHHHHHHHH
Q 012404 335 ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAML-STNHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAIL 408 (464)
Q Consensus 335 ~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L-~~~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~A~~~L 408 (464)
.....+.....+-.+.+.+..+ ++...|..++..| ..++....++...+ .+...-.+|.++ +--++.+++.+|
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL 233 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHH
Confidence 7777777877888899988866 6778888888875 55677777776664 366777888866 599999999999
Q ss_pred HHHhccChhhHHH---HHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 409 HTICLSDRTKWKA---MREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 409 ~~L~~~~~~~~~~---~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
..|-..... ..- -+.+..-+..+..|+.+.+..++-.|--+.+.+-..|
T Consensus 234 ~ellldr~n-~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 234 GELLLDRSN-FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHSGGG-HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHchhH-HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 999875542 222 2334556778888889888889999988887765444
No 193
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.63 E-value=16 Score=40.50 Aligned_cols=240 Identities=17% Similarity=0.155 Sum_probs=128.8
Q ss_pred hhhhhHHHHHHhhcCC------chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhccccccc--CCCChhhHHHH
Q 012404 169 ADRDHFLSLLKKMSAT------LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCE--NGINPNLQEDV 240 (464)
Q Consensus 169 ~~~~~i~~Lv~~Ls~~------~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~--~~~~~~~~~~A 240 (464)
.+.+++..+++.+.+. .......++.|+..++ -..||+.+.+ .|+++.|+..|...... +....++.+..
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~-~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLE-LNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHH-cCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 4567888888888432 2223345555666666 7899999999 99999999998632210 01125666666
Q ss_pred HHHHHccccCcchH-H----HHhc-------CCCChHHHHHHHhcC----CHHHHHHHHHHHHHhcccCcchh-hhcccC
Q 012404 241 ITTLLNLSIHDNNK-K----LVAE-------TPMVIPLLMDALRSG----TIETRSNAAAALFTLSALDSNKE-VIGKSG 303 (464)
Q Consensus 241 ~~~L~~Ls~~~~~~-~----~i~~-------~~~~i~~Lv~lL~~~----~~~~~~~aa~~L~~Ls~~~~~~~-~i~~~g 303 (464)
+.++..+....... . .... ...-+..|++.+.+. ++......++.|-.|+..+..+. .+++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 66655542222110 0 0000 111245555555543 57788888888888887654332 22221
Q ss_pred chHHHHHhc--cc---CCHHHHHH-HHHHHHHhccCc---hhhhHHHhcCcHHHHHHHHcCC------------------
Q 012404 304 ALKPLIDLL--DE---GHQSAMKD-VASAIFNLCITH---ENKARAVRDGGVSVILKKIMDG------------------ 356 (464)
Q Consensus 304 ~i~~Lv~lL--~~---~~~~~~~~-al~aL~~L~~~~---~~~~~iv~~g~v~~Lv~lL~~~------------------ 356 (464)
+.+.+++= .. ++....-+ -+.+..++-.+. ..|..+++.|.+...+++|...
T Consensus 271 -F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred -HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 11111110 10 11222222 222222332222 3577788999999999988531
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhc-cCChhHHHHHHHHHHHHhc
Q 012404 357 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTICL 413 (464)
Q Consensus 357 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~A~~~L~~L~~ 413 (464)
.....++.+|.-||.+....+.+...+++ .+++-|.. .+...+=.-|=-+|-.|+.
T Consensus 350 psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 23456788888888876544455556666 44444443 2222333334444444444
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.62 E-value=0.045 Score=54.52 Aligned_cols=43 Identities=21% Similarity=0.535 Sum_probs=35.9
Q ss_pred ccCccchhhccCcc----cCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 84 FKCPLSKELMRDPV----ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 84 f~CPi~~~~m~dPv----~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
=+||+|.+-|.+-| .+.|.|+|--+|+++|+.. +||+||--.+
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 48999999998876 4569999999999999876 5899876544
No 195
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.39 E-value=21 Score=39.64 Aligned_cols=244 Identities=16% Similarity=0.132 Sum_probs=144.3
Q ss_pred hhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh----cCC----HHHH
Q 012404 208 LFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR----SGT----IETR 279 (464)
Q Consensus 208 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~----~~~----~~~~ 279 (464)
.+.+ .|++..|+.++..-.. ...+.+.....+..|...++-..||..+... ++++.|++.|. .+. .+.-
T Consensus 112 v~~~-~gGL~~ll~~l~~~~~-~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 112 VLAE-CGGLEVLLSRLDSIRD-FSRGRELLQVLLKLLRYCCKVKVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred Hhhc-CCCHHHHHHHHHhhcc-ccCcHHHHHHHHHHHHHHHhhHHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHH
Confidence 3445 7999999999874321 0223556667778888888888999999986 58999888874 333 4555
Q ss_pred HHHHHHHHHhcccCc---chhhh--c--------ccCchHHHHHhcccC----CHHHHHHHHHHHHHhccCchhhhHH-H
Q 012404 280 SNAAAALFTLSALDS---NKEVI--G--------KSGALKPLIDLLDEG----HQSAMKDVASAIFNLCITHENKARA-V 341 (464)
Q Consensus 280 ~~aa~~L~~Ls~~~~---~~~~i--~--------~~g~i~~Lv~lL~~~----~~~~~~~al~aL~~L~~~~~~~~~i-v 341 (464)
+.....+..|..... ..... . ...-+..|++.+.+. ++.+....+++|-.|+..++....+ +
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv 268 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV 268 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence 555555544433211 11100 1 112366666666553 6788999999999999887655543 2
Q ss_pred hcCcHHHHHHHHc-C-C--chHHHHHHHHHHhhC----C---HHHHHHHHhcCcHHHHHHHHhccC-------ChhH---
Q 012404 342 RDGGVSVILKKIM-D-G--VHVDELLAILAMLST----N---HRAVEEIGDLGGVSCMLRIIREST-------CDRN--- 400 (464)
Q Consensus 342 ~~g~v~~Lv~lL~-~-~--~~~~~a~~~L~~L~~----~---~~~~~~i~~~g~i~~Lv~ll~~~~-------~~~~--- 400 (464)
+. . .+.+++=. + . .--..-+..++.++. + ..-|+.+++.|.+...++.|...- ++.-
T Consensus 269 ~~-F-~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~ 346 (802)
T PF13764_consen 269 EH-F-KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF 346 (802)
T ss_pred HH-H-HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence 21 1 11112111 1 1 111223444455543 2 346788899999998888776532 1222
Q ss_pred -----HHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHhccc
Q 012404 401 -----KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRTV 458 (464)
Q Consensus 401 -----~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g-~~~~k~~A~~~L~~l~~~~ 458 (464)
-..++.+|.-|+...... +.++. ...++.+..|-+.. +..+=.-|--+|..++..+
T Consensus 347 l~~psLp~iL~lL~GLa~gh~~t-Q~~~~-~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 347 LSRPSLPYILRLLRGLARGHEPT-QLLIA-EQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred hcCCcHHHHHHHHHHHHhcCHHH-HHHHH-hhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 245788888888876543 34443 56777777776555 3345556666666665543
No 196
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.12 E-value=5.1 Score=43.99 Aligned_cols=217 Identities=11% Similarity=0.080 Sum_probs=139.9
Q ss_pred CChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHhcccCcchhhhc--ccCchHHH
Q 012404 232 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIG--KSGALKPL 308 (464)
Q Consensus 232 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~L 308 (464)
+.|...-.|.+++...+........+... ++...+..+. +..+..+..|++++...+. ...+. ..+.++.|
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDGL 535 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHHH
Confidence 34555556666665444332222222211 2333344443 3356677777777776662 11111 25788899
Q ss_pred HHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc----CCchHHHHHHHHHHhhCCHHHHHHHHhcCc
Q 012404 309 IDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM----DGVHVDELLAILAMLSTNHRAVEEIGDLGG 384 (464)
Q Consensus 309 v~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~ 384 (464)
.++....+.++....+.+|...+..+.......+....|..+.+.. ++-+...+-.++..|+....+...+.+ -.
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~ 614 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RL 614 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HH
Confidence 9999888889999999999999988876666677777888777654 234566677777777765555555543 36
Q ss_pred HHHHHHHHhccC---ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHH-hhcCCHHHHHHHHHHHHHHhc
Q 012404 385 VSCMLRIIREST---CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL-AQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 385 i~~Lv~ll~~~~---~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~L-l~~g~~~~k~~A~~~L~~l~~ 456 (464)
||.|+.+|+... +.....-|+.+|-.+-.+.+......+. .-+.+++.+. +++++..+-..|...|+.+-.
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 999999998632 2455566788888777766644444443 3566677775 688899999999999997643
No 197
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.10 E-value=4.9 Score=39.45 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=93.5
Q ss_pred hhhHHHHHHHHHccccCcchHHHHhc-CCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc---CcchhhhcccCchHHHH
Q 012404 234 PNLQEDVITTLLNLSIHDNNKKLVAE-TPMVIPLLMDALRSGTIETRSNAAAALFTLSAL---DSNKEVIGKSGALKPLI 309 (464)
Q Consensus 234 ~~~~~~A~~~L~~Ls~~~~~~~~i~~-~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~---~~~~~~i~~~g~i~~Lv 309 (464)
...++.++..|.++-...-....+.. ...++..+.+.++.|..+-+..|+.++.-|+.. .+....+.+ ...|.|.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~ 135 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHH
Confidence 45555666555554322211111111 112466678888888777777777766666553 233333333 4678888
Q ss_pred HhcccC--CHHHHHHHHHHHHHhccCch-hhhHHHh-cCcHHHHHHH--Hc-CC-----------chHHHHHHHHHHhhC
Q 012404 310 DLLDEG--HQSAMKDVASAIFNLCITHE-NKARAVR-DGGVSVILKK--IM-DG-----------VHVDELLAILAMLST 371 (464)
Q Consensus 310 ~lL~~~--~~~~~~~al~aL~~L~~~~~-~~~~iv~-~g~v~~Lv~l--L~-~~-----------~~~~~a~~~L~~L~~ 371 (464)
..+.++ ++.++..++.+|.-++.... .-..+.. ...+..+... +. ++ .+...|+..-..|..
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh
Confidence 888765 34555566666665543211 1111110 0122212111 11 11 245556655555554
Q ss_pred C-HHH-HHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 372 N-HRA-VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 372 ~-~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
. +.. ..... ...++.|+.+|.+. +..+|..|-.+|..|...
T Consensus 216 ~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 216 TLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYEL 258 (309)
T ss_pred cCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 3 332 22222 23589999999976 488999888888777543
No 198
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=20 Score=38.54 Aligned_cols=220 Identities=13% Similarity=0.115 Sum_probs=119.7
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHhcccC
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALD 293 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~ 293 (464)
++..|..+|+ +....++--|+..+..|+........+ ..+ ...++..|+ ..+..+|+.|+..|+.+|...
T Consensus 330 ~~~~Lg~fls------~rE~NiRYLaLEsm~~L~ss~~s~dav-K~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 330 AVNQLGQFLS------HRETNIRYLALESMCKLASSEFSIDAV-KKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHHhh------cccccchhhhHHHHHHHHhccchHHHH-HHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 5556666665 334555555666665555443322222 221 556777888 568899999999999998755
Q ss_pred cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccC---c-----hh-------hhHHHhcCcHHHHHHHHcC-Cc
Q 012404 294 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT---H-----EN-------KARAVRDGGVSVILKKIMD-GV 357 (464)
Q Consensus 294 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~---~-----~~-------~~~iv~~g~v~~Lv~lL~~-~~ 357 (464)
|...| |..|++-|...+...++.-..=..-|+.- + +. ....++.++...+++.+.+ ++
T Consensus 401 -Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNned 474 (938)
T KOG1077|consen 401 -NAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNED 474 (938)
T ss_pred -hHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchh
Confidence 44444 34566666665555555443322222211 0 00 0123344555566665554 37
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCc--HHHHHHHHhc------------------cCChhHHHHHHHHHHHHhccChh
Q 012404 358 HVDELLAILAMLSTNHRAVEEIGDLGG--VSCMLRIIRE------------------STCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 358 ~~~~a~~~L~~L~~~~~~~~~i~~~g~--i~~Lv~ll~~------------------~~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
++..|+.-+...-..+...+.|+..|| +.-.-.++.. .+++.++.--+.+..-++...|+
T Consensus 475 lq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PE 554 (938)
T KOG1077|consen 475 LQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPE 554 (938)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChh
Confidence 888888777777666666666666653 2222223321 22344444444444444444443
Q ss_pred hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 418 KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 418 ~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
.. ..+...+..-.+.-+.++|.+|.+-|....
T Consensus 555 i~------~~v~~vFq~~~n~~D~ElQqRa~EYLql~k 586 (938)
T KOG1077|consen 555 IK------SNVQKVFQLYSNLIDVELQQRAVEYLQLSK 586 (938)
T ss_pred hh------HHHHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 21 122233333344457789999988887654
No 199
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.95 E-value=0.26 Score=30.23 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=24.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012404 264 IPLLMDALRSGTIETRSNAAAALFTLSA 291 (464)
Q Consensus 264 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~ 291 (464)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999998874
No 200
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.92 E-value=0.33 Score=40.19 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=55.2
Q ss_pred ChHHHHHHHh-cCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 263 VIPLLMDALR-SGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 263 ~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
++..|+++|. +.++.+..-|+.=|..++.. +..+..+.+.|+-..++.|+..++++++..|+.++..|-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5667889994 44677777788888888875 566777777899999999999999999999999997664
No 201
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=2.3 Score=45.75 Aligned_cols=70 Identities=19% Similarity=0.100 Sum_probs=49.8
Q ss_pred hHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
...++.+.+.+. +..+..++-.+..+-.. ..+...+ .|.++.|.+++. +.++.+..+|+.+|..+...+
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~-~gl~~~L~~ll~------D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVED-SGLVDALKDLLS------DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcC---Chhhccc-cchhHHHHHHhc------CCCchHHHHHHHHHHHHHHhC
Confidence 445666666554 66676666666655543 3444555 799999999999 668999999999999886544
Q ss_pred c
Q 012404 252 N 252 (464)
Q Consensus 252 ~ 252 (464)
.
T Consensus 192 ~ 192 (734)
T KOG1061|consen 192 P 192 (734)
T ss_pred C
Confidence 3
No 202
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=91.87 E-value=13 Score=41.18 Aligned_cols=184 Identities=14% Similarity=0.041 Sum_probs=113.4
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHH
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAV 341 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv 341 (464)
..+|.|-..+.++.+..|..++.++.-....+..+.......-|...+.++++++.++++.|+.++..-+.+..+..+
T Consensus 966 sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIr-- 1043 (1233)
T KOG1824|consen 966 SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIR-- 1043 (1233)
T ss_pred HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHH--
Confidence 367888888888888888888777654444333333333345567788899999999999999999877766543322
Q ss_pred hcCcHHHHHHHHc-----------------------CC-chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhcc--
Q 012404 342 RDGGVSVILKKIM-----------------------DG-VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-- 395 (464)
Q Consensus 342 ~~g~v~~Lv~lL~-----------------------~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-- 395 (464)
+.+|.|+..|- ++ +.+..|...+..|-.....+-.+ ..++..+..|
T Consensus 1044 --DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~di------t~Fl~~~~~GL~ 1115 (1233)
T KOG1824|consen 1044 --DLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDI------TEFLNHVEDGLE 1115 (1233)
T ss_pred --HHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccH------HHHHHHHHhhcc
Confidence 34444443331 11 45666777777776554433222 2222233322
Q ss_pred CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc------------CCHHHHHHHHHHHHHHhcc
Q 012404 396 TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------------GTARAKRKATGILERLKRT 457 (464)
Q Consensus 396 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~------------g~~~~k~~A~~~L~~l~~~ 457 (464)
+-...+.-...+|..|+.-.|...-+.+ -.++++|-+.... .-.+.|+.|..++..|-+-
T Consensus 1116 DhydiKmlt~l~l~rLa~lcPs~Vlqrl--D~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~i 1187 (1233)
T KOG1824|consen 1116 DHYDIKMLTFLMLARLADLCPSAVLQRL--DRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTI 1187 (1233)
T ss_pred hhhHHHHHHHHHHHHHHhhCcHHHHHHH--HHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcc
Confidence 1156677777888888888886654444 2566777665311 1235788888888877443
No 203
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.13 Score=48.17 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=40.8
Q ss_pred CCCcccCccchhhccCcccC-CCCccccHHHHHHHHHcC-CCCCCCCccccc
Q 012404 80 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAG-NRTCPRTQQVLS 129 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~ 129 (464)
-...-+||+|++.-..|.++ +|||.||.-||..-+... ..+||.|+++..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567899999999999765 599999999998876642 468999998764
No 204
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.74 E-value=1.1 Score=48.97 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=99.2
Q ss_pred hhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHH
Q 012404 206 RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAA 285 (464)
Q Consensus 206 r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~ 285 (464)
|+++.. ..+|.|++... +.+...+.+-+.+|.+.-.+-.....+-.-+...|.|++-|.-++..+|..+..+
T Consensus 861 kQRfF~--~ivP~l~~~~~------t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~ 932 (1030)
T KOG1967|consen 861 KQRFFC--DIVPILVSKFE------TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRT 932 (1030)
T ss_pred HHHHHH--hhHHHHHHHhc------cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhh
Confidence 444443 67888888887 2234455556666666544443333333344578888888888899999888888
Q ss_pred HHHhcccCcchhhhcccCchHHHHHhcccCC---HHHHHHHHHHHHHhcc-CchhhhHHHhcCcHHHHHHHHcCC--chH
Q 012404 286 LFTLSALDSNKEVIGKSGALKPLIDLLDEGH---QSAMKDVASAIFNLCI-THENKARAVRDGGVSVILKKIMDG--VHV 359 (464)
Q Consensus 286 L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~al~aL~~L~~-~~~~~~~iv~~g~v~~Lv~lL~~~--~~~ 359 (464)
|.-+......-..---.-.||.++.+=++.+ ..+++.|+.+|..|.. .+-..-.-.+..++..|++.|.++ -++
T Consensus 933 i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR 1012 (1030)
T KOG1967|consen 933 IPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVR 1012 (1030)
T ss_pred hhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHH
Confidence 8776543321111111345777777766653 5788999999999998 454444445567888999999886 456
Q ss_pred HHHHHH
Q 012404 360 DELLAI 365 (464)
Q Consensus 360 ~~a~~~ 365 (464)
..|+.+
T Consensus 1013 ~eAv~t 1018 (1030)
T KOG1967|consen 1013 KEAVDT 1018 (1030)
T ss_pred HHHHHH
Confidence 667654
No 205
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=91.63 E-value=1.7 Score=46.47 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=98.0
Q ss_pred CchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhH---HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHH
Q 012404 303 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKAR---AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVE 377 (464)
Q Consensus 303 g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~---iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~ 377 (464)
..+..++..|.+.++.++..|+.++..|+..-..|.. +...|+ .|.+.|... .+.-..+.+|..++..-.--+
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 3456677888888999999999999988755444422 223343 467777654 454444555554443210000
Q ss_pred HH-HhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 378 EI-GDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 378 ~i-~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
.. --.|.+|.|.-+|++.+ .+++++++.++..+|.+.++... ..+=+.+.--|+.++.+....+++.|...+-.+++
T Consensus 877 m~pPi~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~-aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVS-AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cCCChhhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 00 01256899999999876 99999999999999999886422 22112333456667777777888888877766655
Q ss_pred c
Q 012404 457 T 457 (464)
Q Consensus 457 ~ 457 (464)
.
T Consensus 955 a 955 (1172)
T KOG0213|consen 955 A 955 (1172)
T ss_pred h
Confidence 4
No 206
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.49 E-value=9.4 Score=41.76 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=96.1
Q ss_pred HhcCCHHHHHHHHH-HHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHH
Q 012404 271 LRSGTIETRSNAAA-ALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVI 349 (464)
Q Consensus 271 L~~~~~~~~~~aa~-~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~L 349 (464)
|.+++...|..|+. +|..++..++ - .-.++-+++.+.+.+.++++-.-.-|.+.+........+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m-----ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M-----SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 45555656666654 4445555444 1 122455555555667777776666666666555422222 45555
Q ss_pred HHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhc
Q 012404 350 LKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEES 427 (464)
Q Consensus 350 v~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g 427 (464)
.+=++++ .++--|+.+|.-|=. .++.. ..++.+.+.+.+.+ +.++..|+-++..+...++ .++.+.|
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~-----~el~~-~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld~----~l~~~~g 166 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRV-----KELLG-NIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLDK----DLYHELG 166 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcCh-----HHHHH-HHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcCH----hhhhccc
Confidence 5555554 345555555544321 11111 23556666676553 7788888888877776664 3444567
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 428 THGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 428 ~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
....+..|+.+.++.+...|...|..+..
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 77777777777788888888777776654
No 207
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.14 E-value=0.18 Score=34.87 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=23.9
Q ss_pred ccCccchhhccCcccC-CCCcc--ccHHHH-HHHHHcCCCCCCCCccc
Q 012404 84 FKCPLSKELMRDPVIL-ASGQT--FDRPYI-QRWLKAGNRTCPRTQQV 127 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~-~~g~~--~~r~~I-~~~~~~~~~~~P~~~~~ 127 (464)
+.|||+++.|.-||-- .|.|. ||-... +.....+.-.||+|++|
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6899999999999964 47664 776444 44444444579999874
No 208
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.05 E-value=0.69 Score=42.98 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHhcCc-------HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccH
Q 012404 357 VHVDELLAILAMLSTNHRAVEEIGDLGG-------VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTH 429 (464)
Q Consensus 357 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~-------i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~ 429 (464)
..+..|+.+|+.||..+.|...+...+- +..|++++....+...+|.|+.+|.+|+..+...+..+..+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4688999999999998888877776653 445566666555689999999999999999887777777778899
Q ss_pred HHHHHHhhcCCHH
Q 012404 430 GTISKLAQDGTAR 442 (464)
Q Consensus 430 ~~L~~Ll~~g~~~ 442 (464)
+.|+..+..+...
T Consensus 219 ~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 219 SHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776443
No 209
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.04 E-value=1.3 Score=42.01 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcc-cCcchhhhcccCchHHHHHhccc-CCHHHHHHHHHHHHHhcc-CchhhhHHHhcCcHHHHHHHHc
Q 012404 278 TRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCI-THENKARAVRDGGVSVILKKIM 354 (464)
Q Consensus 278 ~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~-~~~~~~~iv~~g~v~~Lv~lL~ 354 (464)
....|+..|..++. +++.+..+.+...+..|+++|+. ..+.++.+++.+|..+.. ++.|...+-+.+|+..+++++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567788888886 56778889999999999999954 478889999999877665 5578888888899999999998
Q ss_pred CC----chHHHHHHHHHHhhC
Q 012404 355 DG----VHVDELLAILAMLST 371 (464)
Q Consensus 355 ~~----~~~~~a~~~L~~L~~ 371 (464)
+. .++-+++..|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 65 567778877776654
No 210
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.03 E-value=0.28 Score=30.05 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=25.3
Q ss_pred chHHHHHhcccCCHHHHHHHHHHHHHhcc
Q 012404 304 ALKPLIDLLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 304 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 332 (464)
.+|.+++++.+++++++..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999998864
No 211
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.02 E-value=3.9 Score=39.08 Aligned_cols=174 Identities=17% Similarity=0.187 Sum_probs=105.9
Q ss_pred CChhhHHHHHHHHHccccCcchHHHHhcCCC-ChHHHHHHHhc----CCHHHHHHHHHHHHHhcccCcchhhhccc-C-c
Q 012404 232 INPNLQEDVITTLLNLSIHDNNKKLVAETPM-VIPLLMDALRS----GTIETRSNAAAALFTLSALDSNKEVIGKS-G-A 304 (464)
Q Consensus 232 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~-~i~~Lv~lL~~----~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~-g-~ 304 (464)
..++.+--++..++-+..+......+...++ ....+..++.. .++..+.-+++++.|+-.+...+..+... + .
T Consensus 75 Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~ 154 (268)
T PF08324_consen 75 WPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSS 154 (268)
T ss_dssp S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTC
T ss_pred CCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccch
Confidence 3445566667777766666665555544332 24445555543 35778888999999999888888776654 3 3
Q ss_pred hHHHHHhcccC----CHHHHHHHHHHHHHhccCc-hhh-hHHHhcCcHHHHHHHHc----CCchHHHHHHHHHHhhCCHH
Q 012404 305 LKPLIDLLDEG----HQSAMKDVASAIFNLCITH-ENK-ARAVRDGGVSVILKKIM----DGVHVDELLAILAMLSTNHR 374 (464)
Q Consensus 305 i~~Lv~lL~~~----~~~~~~~al~aL~~L~~~~-~~~-~~iv~~g~v~~Lv~lL~----~~~~~~~a~~~L~~L~~~~~ 374 (464)
+...+..+... +..++..++.+++|++... ..+ ..-.+...+..+++.+. +++..-.++.+|++|...+.
T Consensus 155 i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 155 ILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 44444444443 6788899999999998654 222 11122234566666433 23677889999999998776
Q ss_pred HHHHHHh-cCcHHHHHHHHhccCChhHHHHHH
Q 012404 375 AVEEIGD-LGGVSCMLRIIRESTCDRNKENCI 405 (464)
Q Consensus 375 ~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~A~ 405 (464)
......+ .|+-..+-.....+..++.++.+.
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 235 SAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 6666655 354444444443344466666543
No 212
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.84 E-value=1.4 Score=38.55 Aligned_cols=142 Identities=20% Similarity=0.154 Sum_probs=91.6
Q ss_pred hHHHHHHHhc--CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhhHH
Q 012404 264 IPLLMDALRS--GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARA 340 (464)
Q Consensus 264 i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~i 340 (464)
+..++..|.. .+.++|..+.-++..+- +..+... ..-.-+.+-.++..++.+....+..+|..|-... +....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 3344545543 46678888877777763 2222222 1112233334444444456777888888887654 556666
Q ss_pred H-hcCcHHHHHHHHc--CC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChh-HHHHHHHHHH
Q 012404 341 V-RDGGVSVILKKIM--DG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDR-NKENCIAILH 409 (464)
Q Consensus 341 v-~~g~v~~Lv~lL~--~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~A~~~L~ 409 (464)
. ..|..+.++.++. .. ..+..++.+|..-|.+...|..+.+.| ++.|-++.+.+.++. .+..|+-.|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHh
Confidence 5 6799999999998 33 567778888888888888888887765 888888887554455 5666665554
No 213
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.62 E-value=5.4 Score=38.90 Aligned_cols=156 Identities=16% Similarity=0.152 Sum_probs=105.0
Q ss_pred CCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc--chh-------hhcc
Q 012404 231 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKE-------VIGK 301 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~-------~i~~ 301 (464)
+.++.+++.|+..|.-.+.-+. .++. ..++.+...++.++.+++..|+.+|+.+..... .-. ....
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~---~~a~--~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDK---ELAK--EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS 112 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhCh---HHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence 5678999999999988877664 2222 247778888888899999999999999876321 111 1223
Q ss_pred cCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC------chHHHHHHHHHHhhCCHHH
Q 012404 302 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG------VHVDELLAILAMLSTNHRA 375 (464)
Q Consensus 302 ~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~~~~ 375 (464)
...+..+.+.+.+.+++++..|+..+.-|-..+.... ...++..|+-+-.++ .++..-...+-..|.....
T Consensus 113 ~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 113 KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 4677888888888899999999999998876654333 123455555555444 2344444555666766544
Q ss_pred HHHHHhcCcHHHHHHHHhc
Q 012404 376 VEEIGDLGGVSCMLRIIRE 394 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~ll~~ 394 (464)
.+.......++.+-.+...
T Consensus 190 ~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 190 NQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4455555677777777765
No 214
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.34 E-value=0.83 Score=42.43 Aligned_cols=80 Identities=24% Similarity=0.253 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcccCcchhhhcccCc-------hHHHHHhccc-CCHHHHHHHHHHHHHhccCchhh--hHHHhcCc
Q 012404 276 IETRSNAAAALFTLSALDSNKEVIGKSGA-------LKPLIDLLDE-GHQSAMKDVASAIFNLCITHENK--ARAVRDGG 345 (464)
Q Consensus 276 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~-------i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~--~~iv~~g~ 345 (464)
..-|..|..+|..|+..+.|...|...+- +..|+.+|.. +++-.++-|+..|.+|+..++.- ....+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35689999999999999999888877543 3445555544 37788999999999999988643 33346689
Q ss_pred HHHHHHHHcC
Q 012404 346 VSVILKKIMD 355 (464)
Q Consensus 346 v~~Lv~lL~~ 355 (464)
|..|+.++.+
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 215
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.33 E-value=1 Score=37.26 Aligned_cols=70 Identities=7% Similarity=0.059 Sum_probs=55.9
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
.+..|+++|..+.++.+..-|+.=|..++..-|. .+.++...|+-..+..|+.+.++.+|..|...++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4888999996554467777788888888888875 467777889999999999999999999999988855
No 216
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.33 E-value=30 Score=37.44 Aligned_cols=215 Identities=13% Similarity=0.187 Sum_probs=136.2
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
++-.+.++..|+++ +..+..|+..+..+....++. +. .++|.|+.-|. ++|+.++..|+.++..|+.
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr---~~FprL~EkLe------DpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR---PCFPRLVEKLE------DPDPSVVSAAVSVICELAR 210 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh---hhHHHHHHhcc------CCCchHHHHHHHHHHHHHh
Confidence 44556778888776 778889998888877644433 32 47888999998 7799999999999999987
Q ss_pred Ccc-hHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCC-HHHHHHHHHH
Q 012404 250 HDN-NKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGH-QSAMKDVASA 326 (464)
Q Consensus 250 ~~~-~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~al~a 326 (464)
... |-.. .-|.+-++|... +.=+...-.....+|+..+. .++ ..++++|.+++.+.. ..+.-.+..+
T Consensus 211 KnPknyL~------LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNT 280 (877)
T KOG1059|consen 211 KNPQNYLQ------LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNT 280 (877)
T ss_pred hCCccccc------ccHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 653 3221 346667777544 32234444555566665442 121 246899999997753 2344555554
Q ss_pred HH--HhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHH
Q 012404 327 IF--NLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNK 401 (464)
Q Consensus 327 L~--~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 401 (464)
+- +++....+....++. ++..|-.++.+. +++--++-++.-+... +....+-. ..+++.|... ++..+
T Consensus 281 VVa~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~Dk-D~SIR 353 (877)
T KOG1059|consen 281 VVAVSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDK-DESIR 353 (877)
T ss_pred heeehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccC-CchhH
Confidence 43 333333233333322 455555555543 7777788888888864 54433322 3466777644 58899
Q ss_pred HHHHHHHHHHhcc
Q 012404 402 ENCIAILHTICLS 414 (464)
Q Consensus 402 ~~A~~~L~~L~~~ 414 (464)
-.|+.+|.-+...
T Consensus 354 lrALdLl~gmVsk 366 (877)
T KOG1059|consen 354 LRALDLLYGMVSK 366 (877)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999977763
No 217
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.29 E-value=1.6 Score=38.99 Aligned_cols=93 Identities=22% Similarity=0.192 Sum_probs=71.6
Q ss_pred ChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc
Q 012404 233 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL 312 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 312 (464)
++.++.+++.++..|+..-+ .+++ ..+|.+...|+++++.+|+.|+.+|..|...+--+.. ...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 36788899998888765432 3333 2688899999999999999999999999876533322 12346777888
Q ss_pred ccCCHHHHHHHHHHHHHhccC
Q 012404 313 DEGHQSAMKDVASAIFNLCIT 333 (464)
Q Consensus 313 ~~~~~~~~~~al~aL~~L~~~ 333 (464)
.+++++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999988766
No 218
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.93 E-value=0.15 Score=35.65 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=33.2
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCC
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 132 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 132 (464)
+..|=.++..=...+++||||..++.+-.- ++..-||+|+.|+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence 334555555556688999999999988432 33445999999987543
No 219
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=33 Score=38.71 Aligned_cols=237 Identities=16% Similarity=0.112 Sum_probs=130.2
Q ss_pred hhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 172 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
..+..|++.+++. ...+=.|++.+..++...| + .+++ ..|...++++.. .++...-..|+.+|..|+..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~Lad--~vi~svid~~~p-----~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELAD--QVIGSVIDLFNP-----AEDDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHHH--HHHHHHHHhcCc-----CCchhHHHHHHHHHHHHHhc
Confidence 3444555555543 5567789999999988666 2 3333 466677776653 22455666888888888765
Q ss_pred cchHHHHhcCCCChHHHHHHHh----c----CCHHHHHHHHHHHHHhcccCcch--hhhcccCchHH-HHHhcccCCHHH
Q 012404 251 DNNKKLVAETPMVIPLLMDALR----S----GTIETRSNAAAALFTLSALDSNK--EVIGKSGALKP-LIDLLDEGHQSA 319 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL~----~----~~~~~~~~aa~~L~~Ls~~~~~~--~~i~~~g~i~~-Lv~lL~~~~~~~ 319 (464)
.-....... .++|.+++-|. . ....+|.+|+-+++.++...+.. ..+.. ...+. |...+=+....+
T Consensus 411 GlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 411 GLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNC 487 (1133)
T ss_pred CCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhH
Confidence 533333332 36676666653 1 23568889998888888643221 11111 11222 222233345678
Q ss_pred HHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC-----chHHHHHHHHH-HhhCCHHHHHHHHhcCcHHHHH-HHH
Q 012404 320 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG-----VHVDELLAILA-MLSTNHRAVEEIGDLGGVSCML-RII 392 (464)
Q Consensus 320 ~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~-----~~~~~a~~~L~-~L~~~~~~~~~i~~~g~i~~Lv-~ll 392 (464)
+..|..|+....+.+.|.. .=+++++.- ..+.++-..|+ -++..+..++-+.+ .|+ +-+
T Consensus 488 RRAAsAAlqE~VGR~~n~p---------~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv 553 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFP---------HGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKV 553 (1133)
T ss_pred hHHHHHHHHHHhccCCCCC---------CchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhccc
Confidence 8888888887765544432 112222211 11222222221 12223333444433 333 225
Q ss_pred hccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCH
Q 012404 393 RESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA 441 (464)
Q Consensus 393 ~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~ 441 (464)
.+.+ ...++.|+++|..|+...++. +. .+.+++|+.-..+++.
T Consensus 554 ~HWd-~~irelaa~aL~~Ls~~~pk~---~a--~~~L~~lld~~ls~~~ 596 (1133)
T KOG1943|consen 554 CHWD-VKIRELAAYALHKLSLTEPKY---LA--DYVLPPLLDSTLSKDA 596 (1133)
T ss_pred cccc-HHHHHHHHHHHHHHHHhhHHh---hc--ccchhhhhhhhcCCCh
Confidence 5564 899999999999998876643 22 3556666665544433
No 220
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.59 E-value=0.3 Score=33.30 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=22.4
Q ss_pred Cccchhhc--cCcccCC--CCccccHHHHHHHHHcCCCCCCCCcccc
Q 012404 86 CPLSKELM--RDPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVL 128 (464)
Q Consensus 86 CPi~~~~m--~dPv~~~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l 128 (464)
||++.+.| +|-.+.| ||+.++|-+-.+.....+..||-+|++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 3444666 6888899998887765578999999875
No 221
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=89.57 E-value=0.2 Score=40.23 Aligned_cols=58 Identities=17% Similarity=0.535 Sum_probs=35.3
Q ss_pred cCCCCCC-cccCccchhhccCcccCCCC------ccccHHHHHHHHHcCCCCCCCCcccccCCCCc
Q 012404 76 ETVSCPE-EFKCPLSKELMRDPVILASG------QTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 134 (464)
Q Consensus 76 ~~~~~p~-~f~CPi~~~~m~dPv~~~~g------~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 134 (464)
+.+.-|+ +++||||.++-..-|++.++ .-||..++.+-... +..=|.+|+|++.++.+
T Consensus 32 ~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~-~~~HPLSREpit~sMIv 96 (113)
T PF06416_consen 32 EEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVRE-GAPHPLSREPITPSMIV 96 (113)
T ss_dssp CCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHC-T---TTT-----TTTEE
T ss_pred hhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHc-CCCCCCccCCCChhhEe
Confidence 4455444 57899999999999987642 24899999999887 45669999999887654
No 222
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.51 E-value=2 Score=45.00 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=102.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhh---hcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHH
Q 012404 264 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEV---IGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARA 340 (464)
Q Consensus 264 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~---i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i 340 (464)
+..++.+|++.++.+|..|+.+..+|+..-.++.. +...|. .|.+-|....+++...-+.|++.+.+...-+..-
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 45567888999999999999998888764333322 222342 3566677778999999899988887665543211
Q ss_pred -HhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HH---HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 341 -VRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HR---AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 341 -v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~---~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
=-.|.+|.|.-+|.+. .++.+.++.+..+|.. |+ .|+++.=+ --|+++|.+.. ...+.+|...+.-++.
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc---feLvd~Lks~n-KeiRR~A~~tfG~Is~ 759 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC---FELVDSLKSWN-KEIRRNATETFGCISR 759 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH---HHHHHHHHHhh-HHHHHhhhhhhhhHHh
Confidence 1248899999999875 7888899999999985 33 56666422 34777787654 7888888888777665
No 223
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.38 E-value=0.24 Score=48.85 Aligned_cols=49 Identities=22% Similarity=0.486 Sum_probs=40.2
Q ss_pred CCcccCccchhhccCcc-----c--CC-CCccccHHHHHHHHHcC------CCCCCCCccccc
Q 012404 81 PEEFKCPLSKELMRDPV-----I--LA-SGQTFDRPYIQRWLKAG------NRTCPRTQQVLS 129 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv-----~--~~-~g~~~~r~~I~~~~~~~------~~~~P~~~~~l~ 129 (464)
-.+..|-||++...+++ . +| |-|.||-.||..|-... ...||+||.+.+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 55899999999999988 3 45 99999999999998532 257999998743
No 224
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.33 E-value=2.9 Score=37.46 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=76.7
Q ss_pred hhHHHHHHhhcCCchhHHHHHHHHHHHhhcCc-hhhhhhhhcCCchhhhhhhcccccc---cCCCChhhHHHHHHHHHcc
Q 012404 172 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKC---ENGINPNLQEDVITTLLNL 247 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~~g~i~~Lv~lL~~~~~---~~~~~~~~~~~A~~~L~~L 247 (464)
.....+++.+.+..... +.+..|.-.-+..+ .--..+.+ .||+..|+.+|..... ....+......++..|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~-~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS-KILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH-HHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH-HHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34556777775542221 34444443333222 23344556 6999999998864321 1123556778889999988
Q ss_pred ccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 012404 248 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 290 (464)
Q Consensus 248 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls 290 (464)
.........+...++++..|+..|.+.+..++..++..|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8888777888888889999999999999999999999888775
No 225
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.27 E-value=0.18 Score=49.49 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=40.1
Q ss_pred cCccchhhccCcccCCCCccccHHHHHHHHHcC-CCCCCCCcccccCC
Q 012404 85 KCPLSKELMRDPVILASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSHT 131 (464)
Q Consensus 85 ~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~ 131 (464)
+|-||.+-=+|--+=||||..|-.|+..|-.+. ..+|||||-.+...
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 699999988887788999999999999999653 67999999876543
No 226
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=0.097 Score=48.65 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=40.2
Q ss_pred cccCccchhhccCcc----------cCCCCccccHHHHHHHHHcC-CCCCCCCcccccCCCC
Q 012404 83 EFKCPLSKELMRDPV----------ILASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSHTIL 133 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv----------~~~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~~l 133 (464)
+-.|-+|++-+-+-| .++|+|.|---||.-|+.-| .++||.|++..+...+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence 567999987766554 68999999999999999854 5799999887654433
No 227
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=88.59 E-value=8.4 Score=40.31 Aligned_cols=208 Identities=14% Similarity=0.106 Sum_probs=110.6
Q ss_pred CCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhc--CCHHHHHHHHHHHHHh-cccCcchhh-hcc--cC-
Q 012404 231 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS--GTIETRSNAAAALFTL-SALDSNKEV-IGK--SG- 303 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~--~~~~~~~~aa~~L~~L-s~~~~~~~~-i~~--~g- 303 (464)
++|+.++-.|-.-|.+++.++=. .++..+++.|-+ .+++.|..|.-+|.|- ...++.+.. ..+ .|
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~--------qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~ 87 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFE--------QFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGM 87 (858)
T ss_pred CCCCCccccHHHHHHHhccccHH--------HHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccC
Confidence 45778888888888888776611 134445666643 3578888888888773 333432221 111 01
Q ss_pred ------ch-HHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc----CC---chHHHHHHHHHHh
Q 012404 304 ------AL-KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM----DG---VHVDELLAILAML 369 (464)
Q Consensus 304 ------~i-~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~----~~---~~~~~a~~~L~~L 369 (464)
-| .....-|.+..|+.-..|+.+|..++.-+ +-.|.-|-|++.|. ++ ..+.+++.++.+.
T Consensus 88 ~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ 161 (858)
T COG5215 88 RHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYH 161 (858)
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHH
Confidence 01 11223344445555555555555543221 12355566655553 32 6788899999999
Q ss_pred hCCHHHHHHHHhcCc-HHHHH-HHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHH
Q 012404 370 STNHRAVEEIGDLGG-VSCML-RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA 447 (464)
Q Consensus 370 ~~~~~~~~~i~~~g~-i~~Lv-~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A 447 (464)
|....-...+...++ +-.+| ..++++.+..++-.|+.+|..=+..-.+....--+..=++....+.-|..+.+++.+|
T Consensus 162 ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aa 241 (858)
T COG5215 162 CESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAA 241 (858)
T ss_pred hhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHH
Confidence 986433333333332 33344 4556666688889999999872221111100000001133334444566666677666
Q ss_pred HHHHH
Q 012404 448 TGILE 452 (464)
Q Consensus 448 ~~~L~ 452 (464)
-.-|.
T Consensus 242 fgCl~ 246 (858)
T COG5215 242 FGCLN 246 (858)
T ss_pred HHHHH
Confidence 65544
No 228
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.22 E-value=4.2 Score=41.70 Aligned_cols=138 Identities=19% Similarity=0.163 Sum_probs=90.9
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC-cc-----------
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH-DN----------- 252 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~-~~----------- 252 (464)
...+..++..+.+++|. --.|..=.. ...+..|+.+|. ++++...|+..+.-+..+ ++
T Consensus 244 ~~~~~~~~~~~~Wi~Ka-Lv~R~~~~~-~~~~~~L~~lL~--------~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vk 313 (415)
T PF12460_consen 244 SELRPQALEILIWITKA-LVMRGHPLA-TELLDKLLELLS--------SPELGQQAAKAFGILLSDSDDVLNKENHANVK 313 (415)
T ss_pred cchhHHHHHHHHHHHHH-HHHcCCchH-HHHHHHHHHHhC--------ChhhHHHHHHHHhhHhcCcHHhcCccccchhh
Confidence 44455666666555551 000100001 235666777777 356677777777766555 22
Q ss_pred --hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc-cCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 253 --NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK-SGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 253 --~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
+|+.+... ++|.|++-.+..+.+.+.+-..+|..+..+-+......+ ...+|.|++-|+.++.+++..++.+|..
T Consensus 314 lLykQR~F~~--~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 314 LLYKQRFFTQ--VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hHHhHHHHHH--HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 14444432 678888888887777888888899988876554444444 3588999999988899999999999999
Q ss_pred hccCc
Q 012404 330 LCITH 334 (464)
Q Consensus 330 L~~~~ 334 (464)
+....
T Consensus 392 ~l~~~ 396 (415)
T PF12460_consen 392 ILEEA 396 (415)
T ss_pred HHHcC
Confidence 88766
No 229
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=87.79 E-value=0.38 Score=52.19 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=23.8
Q ss_pred HHHHHHHHh-hCCCCCHHHHHHHHHHHHHhh
Q 012404 32 LQKLVRLIV-DDVDYRTETIDQARDTLCALK 61 (464)
Q Consensus 32 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 61 (464)
.++|++||+ |||||++++|++|.+++++.+
T Consensus 580 ~~~F~~ava~D~Rsy~~~lf~~a~~~l~~~~ 610 (629)
T PF10408_consen 580 SDKFVQAVANDGRSYSPELFEKAVRILRRIG 610 (629)
T ss_dssp -HHHHHHHHH-TTT--HHHHHHHHHHHTTST
T ss_pred chHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 456999997 789999999999999999876
No 230
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=87.78 E-value=12 Score=37.85 Aligned_cols=125 Identities=10% Similarity=0.181 Sum_probs=90.7
Q ss_pred HhcCCCChHHHHHHHhcCC---HHHHHHHHHHHHHhcccCcc-hhhhcccCchHHHHHhcc-cC---CHHHHHHHHHHHH
Q 012404 257 VAETPMVIPLLMDALRSGT---IETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLD-EG---HQSAMKDVASAIF 328 (464)
Q Consensus 257 i~~~~~~i~~Lv~lL~~~~---~~~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~-~~---~~~~~~~al~aL~ 328 (464)
+.+.+.....|..++++.. +.+-..|+..+..+..++.. -..+.+.|.++.+++.+. .+ +.++...--.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 3332346667777887763 67777888888888877654 455667899999999888 43 6788888889999
Q ss_pred HhccCchhhhHHHhcCcHHHHHHHHcCC---------chHHHHHHHHHHhhCC-HHHHHHHHh
Q 012404 329 NLCITHENKARAVRDGGVSVILKKIMDG---------VHVDELLAILAMLSTN-HRAVEEIGD 381 (464)
Q Consensus 329 ~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---------~~~~~a~~~L~~L~~~-~~~~~~i~~ 381 (464)
.||.+..+...+.+.+.++.+++++.++ +.....-..+..|..+ |.-|..+.+
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999999998764 1222233455566665 455544443
No 231
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=87.77 E-value=0.76 Score=46.70 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=101.3
Q ss_pred HHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc----Ccc----hhhhcccCchHHH
Q 012404 237 QEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL----DSN----KEVIGKSGALKPL 308 (464)
Q Consensus 237 ~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~----~~~----~~~i~~~g~i~~L 308 (464)
...|.+++.-+..|+..+....--..+...+...|.+..-..|..+++++.+++.. -.+ ...+.. -.+..+
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~ 486 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKM 486 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHH
Confidence 34455555555555554332221112455566677776778899999999998741 122 111111 122223
Q ss_pred HHhc---ccCCHHHHHHHHHHHHHhccCch----hhhHHHhcCcHHHHHHHHc-CC--chHHHHHHHHHHhhCCHHHH-H
Q 012404 309 IDLL---DEGHQSAMKDVASAIFNLCITHE----NKARAVRDGGVSVILKKIM-DG--VHVDELLAILAMLSTNHRAV-E 377 (464)
Q Consensus 309 v~lL---~~~~~~~~~~al~aL~~L~~~~~----~~~~iv~~g~v~~Lv~lL~-~~--~~~~~a~~~L~~L~~~~~~~-~ 377 (464)
+.+- ...+.++..+|.++|.|+..--. --......|.+..++.-.. .+ .++.+|+.+|.||-+++... +
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 3222 22366889999999999875322 0111111222322222111 12 78999999999999987642 2
Q ss_pred HHHhcC-cHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 378 EIGDLG-GVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 378 ~i~~~g-~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
.+--+| +.+.|..++....+-+++.+|+++|..-...
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 222222 4678888888755688999999999866543
No 232
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=87.67 E-value=2.1 Score=38.37 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=59.2
Q ss_pred hhHHHhcCcHHHHHHHHcC-------C----chHHHHHHHHHHhhCCHHHHHHHHhc-CcHHHHHHHHhccCChhHHHHH
Q 012404 337 KARAVRDGGVSVILKKIMD-------G----VHVDELLAILAMLSTNHRAVEEIGDL-GGVSCMLRIIRESTCDRNKENC 404 (464)
Q Consensus 337 ~~~iv~~g~v~~Lv~lL~~-------~----~~~~~a~~~L~~L~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~A 404 (464)
-..+++.||+..|+++|.. . .....++.+|..|..+..|...+... +++..|+..|.+. +..++..|
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~ 178 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLA 178 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHH
Confidence 3467788999999998852 1 35666999999999999999988865 7799999888865 48999999
Q ss_pred HHHHHHHh
Q 012404 405 IAILHTIC 412 (464)
Q Consensus 405 ~~~L~~L~ 412 (464)
+.+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 233
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.65 E-value=3.4 Score=36.16 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=89.5
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD- 293 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~- 293 (464)
.++.++..|... ...++++-.|.-++..+- +..+....+. +-..+-..+..+..+....+..++..|-...
T Consensus 4 ~l~~lL~~L~~~----~~~~~~r~~a~v~l~k~l--~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 4 ELDTLLTSLDML----RQPEEVRSHALVILSKLL--DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp CCCHHHHHHHCT----TTSCCHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHHhccc----CCCHhHHHHHHHHHHHHH--HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCH
Confidence 344555555421 124567777777666652 3334433321 3344445555555557777777777776543
Q ss_pred -cchhhhcccCchHHHHHhcc--cCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCc----hHHHHHHHH
Q 012404 294 -SNKEVIGKSGALKPLIDLLD--EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGV----HVDELLAIL 366 (464)
Q Consensus 294 -~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~----~~~~a~~~L 366 (464)
-....+...|.++.++.++. ..+..+...++.+|..=|.....|..+ ...+++.|-+++.... ++..|+-+|
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 23445667899999999998 668888999999998777776655544 4457888888886432 556666555
Q ss_pred H
Q 012404 367 A 367 (464)
Q Consensus 367 ~ 367 (464)
.
T Consensus 155 ~ 155 (157)
T PF11701_consen 155 C 155 (157)
T ss_dssp H
T ss_pred h
Confidence 4
No 234
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.52 E-value=2.6 Score=37.26 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=72.6
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhccc--CchHHHHHhcccC-CHHHHHHHHHHHHHhccCchhhhH
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKS--GALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKAR 339 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~ 339 (464)
.+..+..+|+++++..|-.++..+..++.... ...+.+. -.+..|+.+|+.. ++.+.+.++.+|..|...-.+...
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45668888999999999988888877776543 3444343 3778899999876 567788888888877654333333
Q ss_pred HHhc-------CcHHHHHHHHcCCchHHHHHHHHHHhhC
Q 012404 340 AVRD-------GGVSVILKKIMDGVHVDELLAILAMLST 371 (464)
Q Consensus 340 iv~~-------g~v~~Lv~lL~~~~~~~~a~~~L~~L~~ 371 (464)
+.+. +.++.+++++.+....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3322 3455555555554667777777777765
No 235
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=87.44 E-value=0.64 Score=42.48 Aligned_cols=57 Identities=19% Similarity=0.358 Sum_probs=43.4
Q ss_pred cccCccchhhccCcccCC-CCccccHHHHHHHHHc-CCCCCCC--CcccccCCCCcchHHH
Q 012404 83 EFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKA-GNRTCPR--TQQVLSHTILTPNHLI 139 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~-~~~~~P~--~~~~l~~~~l~~n~~l 139 (464)
+.+||||.+...-|++-. |.|.|+|..|...+.- ....||. |.+.+..+.+...+.|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 368999999999998765 9999999999999983 2345887 5566666666655544
No 236
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.31 E-value=12 Score=37.08 Aligned_cols=212 Identities=13% Similarity=0.153 Sum_probs=138.0
Q ss_pred hhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhh-----hhhhc-CCchhhhhhhcccccccCCCChhhHHHHHHHH
Q 012404 172 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRA-----LFGES-HDAIPQLLSPLSESKCENGINPNLQEDVITTL 244 (464)
Q Consensus 172 ~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~-----~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L 244 (464)
+.+..|+..|.. .-+.+..+.....++.+.....+. .+... ...+..|+.-- +++++.-.+-..|
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--------~~~dial~~g~ml 147 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--------ENPDIALNCGDML 147 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--------GSTTTHHHHHHHH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--------cCccccchHHHHH
Confidence 445566666643 345666666666666665444332 33332 22333333222 2577888888899
Q ss_pred HccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc-Ccchhhhcc---cCchHHHHHhcccCCHHHH
Q 012404 245 LNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGK---SGALKPLIDLLDEGHQSAM 320 (464)
Q Consensus 245 ~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~ 320 (464)
+.+..++.-...+...+ .+-.+.+....++-++-..|..++..|-.. ......... ...+...-.||.+++=-++
T Consensus 148 Rec~k~e~l~~~iL~~~-~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKHESLAKIILYSE-CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTSHHHHHHHHTSG-GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhhHHHHHHHhCcH-HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 99999988777777765 555588889999999999999999986553 332222222 2456778889999999999
Q ss_pred HHHHHHHHHhccCchhhhHHHh---c-CcHHHHHHHHcCC--chHHHHHHHHHHhhCCH----HHHHHHHhcCcHHHHHH
Q 012404 321 KDVASAIFNLCITHENKARAVR---D-GGVSVILKKIMDG--VHVDELLAILAMLSTNH----RAVEEIGDLGGVSCMLR 390 (464)
Q Consensus 321 ~~al~aL~~L~~~~~~~~~iv~---~-g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~----~~~~~i~~~g~i~~Lv~ 390 (464)
..++..|..|-.+..|-.-|.+ . .-+..++.+|++. .++-.|..++.....+| +.+..+... =..|+.
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N--r~kLl~ 304 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN--REKLLR 304 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT--HHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH--HHHHHH
Confidence 9999999999998887665443 2 4588888888876 78999999998887763 333433333 245566
Q ss_pred HHhc
Q 012404 391 IIRE 394 (464)
Q Consensus 391 ll~~ 394 (464)
.+..
T Consensus 305 fl~~ 308 (335)
T PF08569_consen 305 FLKD 308 (335)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5554
No 237
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=22 Score=40.00 Aligned_cols=197 Identities=16% Similarity=0.114 Sum_probs=122.1
Q ss_pred HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC-CHHHHHHHHHHHHHhcc
Q 012404 254 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCI 332 (464)
Q Consensus 254 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~ 332 (464)
...+++ .++..|...|++.+..++-.||.-+..+..-.+ ..+ ...+|...++++.-. ++.....|+.+|..|+.
T Consensus 335 v~eivE--~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 335 VPEIVE--FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred cHHHHH--HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 445554 367778888888899999999999999887544 111 234566677766543 57788889999999987
Q ss_pred CchhhhHHHhcCcHHHHHHHHc---------CC-chHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHH-HHHHhccCChh
Q 012404 333 THENKARAVRDGGVSVILKKIM---------DG-VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCM-LRIIRESTCDR 399 (464)
Q Consensus 333 ~~~~~~~iv~~g~v~~Lv~lL~---------~~-~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~L-v~ll~~~~~~~ 399 (464)
.+=.....+. .++|.+++-|. .+ .+++.|+.+.|.++.. +..-+-+++. ....| ...+... .-.
T Consensus 410 rGlLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDr-evn 486 (1133)
T KOG1943|consen 410 RGLLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDR-EVN 486 (1133)
T ss_pred cCCcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCc-hhh
Confidence 6543332222 47788777664 11 6899999999999875 3222333332 22233 2344432 356
Q ss_pred HHHHHHHHHHHHhccChh--------------------h-----HHHHHHhhccHHHHHH-Hh----hcCCHHHHHHHHH
Q 012404 400 NKENCIAILHTICLSDRT--------------------K-----WKAMREEESTHGTISK-LA----QDGTARAKRKATG 449 (464)
Q Consensus 400 ~~~~A~~~L~~L~~~~~~--------------------~-----~~~~~~~~g~~~~L~~-Ll----~~g~~~~k~~A~~ 449 (464)
.+..|..++.....+.++ + +..+..-.|...++.+ |+ .+-+..+++.|++
T Consensus 487 cRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 677777777665544211 1 1112222344444443 43 3458899999999
Q ss_pred HHHHHhccc
Q 012404 450 ILERLKRTV 458 (464)
Q Consensus 450 ~L~~l~~~~ 458 (464)
.|..++...
T Consensus 567 aL~~Ls~~~ 575 (1133)
T KOG1943|consen 567 ALHKLSLTE 575 (1133)
T ss_pred HHHHHHHhh
Confidence 999987653
No 238
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.19 E-value=4.7 Score=42.53 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=67.3
Q ss_pred hHHHHHHhhcCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc-
Q 012404 173 HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD- 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~- 251 (464)
....++...+++...+.-|+.-|....+..|+..+ .+|..++++.. ++|..++..|+..|-.++.+.
T Consensus 24 ~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcE------Ded~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 24 DYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCE------DEDVQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-------SSHHHHHHHHHHGGGG--T--
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHh------cccHHHHHHHHHhHHHHHHhHH
Confidence 45566666677777888888889888887777753 46778999998 678899999999999998874
Q ss_pred chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC
Q 012404 252 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 293 (464)
Q Consensus 252 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~ 293 (464)
+....+ ...|+++|.+.++.....+-.+|..|...+
T Consensus 92 ~~v~kv------aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d 127 (556)
T PF05918_consen 92 EHVSKV------ADVLVQLLQTDDPVELDAVKNSLMSLLKQD 127 (556)
T ss_dssp T-HHHH------HHHHHHHTT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHhHH------HHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 233333 445788888877666666656666555433
No 239
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=0.22 Score=34.50 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=36.3
Q ss_pred cCccchhhccCcccCCCCccc-cHHHHHHHHHcCCCCCCCCcccc
Q 012404 85 KCPLSKELMRDPVILASGQTF-DRPYIQRWLKAGNRTCPRTQQVL 128 (464)
Q Consensus 85 ~CPi~~~~m~dPv~~~~g~~~-~r~~I~~~~~~~~~~~P~~~~~l 128 (464)
-|.||.+--.|-|+--|||-. |..|=.+-+...+..||.||.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 499999988899999999975 88887666665678999999875
No 240
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.15 E-value=4.5 Score=38.62 Aligned_cols=161 Identities=22% Similarity=0.203 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHhhcCchhhhhhhhcCC-chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCC-C
Q 012404 186 PDQTEAAKELRLLTKRMPSFRALFGESHD-AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM-V 263 (464)
Q Consensus 186 ~~~~~a~~~L~~L~~~~~~~r~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~-~ 263 (464)
+.+.-++-.+|.+.. ++..-..+....+ ....+..++..+.. ...+..+--+++++.|+-.+...+..+..... .
T Consensus 78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~ 154 (268)
T PF08324_consen 78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSS--SSPPANQMLALRLLANLFSHPPGRQLLLSHFDSS 154 (268)
T ss_dssp CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTT--TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTC
T ss_pred ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccC--CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccch
Confidence 445556666766666 5555445544122 24555555554332 23566777789999999888888887776543 2
Q ss_pred hHHHHHHHhcC----CHHHHHHHHHHHHHhcccC-cch-hhhcccCchHHHHHhccc--CCHHHHHHHHHHHHHhccCch
Q 012404 264 IPLLMDALRSG----TIETRSNAAAALFTLSALD-SNK-EVIGKSGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHE 335 (464)
Q Consensus 264 i~~Lv~lL~~~----~~~~~~~aa~~L~~Ls~~~-~~~-~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~ 335 (464)
+...+..+... +...+..++..++|++..- ..+ ..-.....+..+++.+.. .++++...++.||++|...+.
T Consensus 155 i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 155 ILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 33333333333 5788999999999998642 122 111122346666774433 489999999999999998776
Q ss_pred hhhHHHh-cCcHHHH
Q 012404 336 NKARAVR-DGGVSVI 349 (464)
Q Consensus 336 ~~~~iv~-~g~v~~L 349 (464)
......+ .|+-..+
T Consensus 235 ~~~~~~~~l~~~~~~ 249 (268)
T PF08324_consen 235 SAKQLAKSLDVKSVL 249 (268)
T ss_dssp HHHHHCCCCTHHHHH
T ss_pred hHHHHHHHcChHHHH
Confidence 6665554 3444333
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=86.84 E-value=40 Score=38.70 Aligned_cols=250 Identities=14% Similarity=0.125 Sum_probs=137.4
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc-----cCcchHHHHhc
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS-----IHDNNKKLVAE 259 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls-----~~~~~~~~i~~ 259 (464)
.+.+.+|+..|..++.-. ..-..+ .-.+|-++.++. +....++..|+.+|..+- ....+...+.+
T Consensus 437 ~~tK~~ALeLl~~lS~~i-~de~~L---DRVlPY~v~l~~------Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e 506 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYI-DDEVKL---DRVLPYFVHLLM------DSEADVRATALETLTELLALVRDIPPSDANIFPE 506 (1431)
T ss_pred chhHHHHHHHHHHHhhhc-chHHHH---hhhHHHHHHHhc------CchHHHHHHHHHHHHHHHhhccCCCcccchhhHh
Confidence 456778888888888622 111122 257889999998 556788888888877652 12224445554
Q ss_pred CCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcc------------------cCcchhhhcc-----------cCchHHHH
Q 012404 260 TPMVIPLLMDALRSG-TIETRSNAAAALFTLSA------------------LDSNKEVIGK-----------SGALKPLI 309 (464)
Q Consensus 260 ~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~------------------~~~~~~~i~~-----------~g~i~~Lv 309 (464)
..+|.|-.++.+. ..-+|..=|..|..|+. ++.+-....+ .++=...+
T Consensus 507 --YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~ 584 (1431)
T KOG1240|consen 507 --YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVS 584 (1431)
T ss_pred --hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHH
Confidence 5789888888774 33344443444433321 1111111111 11112334
Q ss_pred HhcccCCHHHHHHHHHHHHHhccCchhhhHHHhc----CcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHH-HhcCc
Q 012404 310 DLLDEGHQSAMKDVASAIFNLCITHENKARAVRD----GGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEI-GDLGG 384 (464)
Q Consensus 310 ~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~----g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i-~~~g~ 384 (464)
.||.++.+-++..-+..|.-||.- +.+. =.++.|+.+|.+.+..-.++ ....++.-.--...- ++.+.
T Consensus 585 sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~a-FfdsI~gvsi~VG~rs~seyl 657 (1431)
T KOG1240|consen 585 SLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGA-FFDSIVGVSIFVGWRSVSEYL 657 (1431)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHH-HHhhccceEEEEeeeeHHHHH
Confidence 455555667777777777777642 2222 24788888888764433322 223333211100011 23445
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+|.|.+-|..+. +.+-..|+.+|..|+...-=+ +..+. .+++-..=++-..+.=+++.+.+++.-..+.
T Consensus 658 lPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~ll~-K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 658 LPLLQQGLTDGE-EAVIVSALGSLSILIKLGLLR-KPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHhccCcc-hhhHHHHHHHHHHHHHhcccc-hHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 666667776554 888899999999888865311 12221 2233333344444556888888877655443
No 242
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.67 E-value=29 Score=39.59 Aligned_cols=127 Identities=21% Similarity=0.153 Sum_probs=91.1
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHhcccC
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALD 293 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~ 293 (464)
+.|.++...+.... ..+|+++..|.-+|..+..-+. .+.+. .+|.|..++. ++++.+|.+++.+++.|+.--
T Consensus 920 f~piv~e~c~n~~~--~sdp~Lq~AAtLaL~klM~iSa---~fces--~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL--FSDPELQAAATLALGKLMCISA---EFCES--HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHhcCCCc--CCCHHHHHHHHHHHHHHhhhhH---HHHHH--HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 56777777765544 5579999999999888754331 23333 4788999997 668999999999998887643
Q ss_pred cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC
Q 012404 294 SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG 356 (464)
Q Consensus 294 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~ 356 (464)
+|-.. -.-+.|...|.+.++.+++.|+.+|.+|-..+..|.+ |.++-+...|.++
T Consensus 993 pnlie----~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK----Gql~eMA~cl~D~ 1047 (1251)
T KOG0414|consen 993 PNLIE----PWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK----GQLSEMALCLEDP 1047 (1251)
T ss_pred ccccc----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc----ccHHHHHHHhcCC
Confidence 32211 1235677888888999999999999999877654433 6777777777766
No 243
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.30 E-value=0.46 Score=46.98 Aligned_cols=61 Identities=20% Similarity=0.418 Sum_probs=47.2
Q ss_pred cccCccchhhccCcc-----cCCCCccccHHHHHHHHHcC-CCCCCCCcccccCCCCcchHHHHHHH
Q 012404 83 EFKCPLSKELMRDPV-----ILASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSHTILTPNHLIREMI 143 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv-----~~~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~~l~~n~~lk~~i 143 (464)
-.+||||.+-..-|+ .+.|||-|--.||++|+-+. ...||.|.-.-...++.+...+|..-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 468999998877775 45699999999999999531 24699998777777787777776543
No 244
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.28 E-value=0.49 Score=45.47 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=33.2
Q ss_pred Cccchhhcc--CcccCC--CCccccHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 86 CPLSKELMR--DPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 86 CPi~~~~m~--dPv~~~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
||+|.+.|. |--+.| ||...||-|.-..-..-++.||-||...+.+
T Consensus 17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 999999984 544555 7887788775544443357899999876654
No 245
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.23 E-value=34 Score=33.24 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=98.2
Q ss_pred CCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC--cchHHHHh--
Q 012404 183 ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH--DNNKKLVA-- 258 (464)
Q Consensus 183 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~-- 258 (464)
.+...|+.|++.|...+--+.+. +. ..++.+...++ .++..++..|+.+|..+... .+......
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~~~----a~--~~l~l~~~~~~------~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDKEL----AK--EHLPLFLQALQ------KDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhChHH----HH--HHHHHHHHHHH------hCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 34688999999999888744322 22 34566777775 34688999999999887332 11111111
Q ss_pred ----cCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc----CCHHHHHHHHHHHHHh
Q 012404 259 ----ETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNL 330 (464)
Q Consensus 259 ----~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~al~aL~~L 330 (464)
....++..+.+.|.+.+++++..++..+..|-..+.... ...++..|+-+--+ ++...+..-...+-..
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 112366778888889999999999999999887553322 13344444443322 2344444444445566
Q ss_pred ccCchhhhHHHhcCcHHHHHHHHcC
Q 012404 331 CITHENKARAVRDGGVSVILKKIMD 355 (464)
Q Consensus 331 ~~~~~~~~~iv~~g~v~~Lv~lL~~ 355 (464)
|.........+....+|.+-.+...
T Consensus 184 ~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 184 ASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 6666544555666777887777654
No 246
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.07 E-value=31 Score=35.34 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=113.1
Q ss_pred ChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc-ccC----CHHHHHHHHHHHHHhccCchh
Q 012404 263 VIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL-DEG----HQSAMKDVASAIFNLCITHEN 336 (464)
Q Consensus 263 ~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~----~~~~~~~al~aL~~L~~~~~~ 336 (464)
.+..++.+..+. +...+..++..+..|.---..-..+ ...+..+..-+ ... .+...+..+|....|.....-
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 455566665544 5777878888777776321000100 12333333333 111 334555556666666544321
Q ss_pred hhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCC-HHH--------HHHHHhc----CcHHHHHHHHhccCChhHHHH
Q 012404 337 KARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN-HRA--------VEEIGDL----GGVSCMLRIIRESTCDRNKEN 403 (464)
Q Consensus 337 ~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~-~~~--------~~~i~~~----g~i~~Lv~ll~~~~~~~~~~~ 403 (464)
.. ...+..|++++.++.....|+..+.-|... ++. .+-+.+. -.+|.|++-.+..+ +..+.+
T Consensus 268 ~~----~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-~~~k~~ 342 (415)
T PF12460_consen 268 LA----TELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-DEIKSN 342 (415)
T ss_pred hH----HHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-hhhHHH
Confidence 11 135678888888888888888888888876 332 1222222 24677777777543 558889
Q ss_pred HHHHHHHHhccChhhHHHHHHh-hccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 404 CIAILHTICLSDRTKWKAMREE-ESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 404 A~~~L~~L~~~~~~~~~~~~~~-~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
.+.+|..+-.+-|.. .+..+ ...++.|++-+...+..++..+..+|..+-..
T Consensus 343 yL~ALs~ll~~vP~~--vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 343 YLTALSHLLKNVPKS--VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 999999999987743 22222 34777777777888888999999998876543
No 247
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=85.98 E-value=31 Score=36.32 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcc
Q 012404 234 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 295 (464)
Q Consensus 234 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~ 295 (464)
..+.-++++++..++... -....+.. .+..|-.+|++.....|-.|.+.|..|+...+.
T Consensus 278 emV~lE~Ar~v~~~~~~n-v~~~~~~~--~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 278 EMVFLEAARAVCALSEEN-VGSQFVDQ--TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred hhhhHHHHHHHHHHHHhc-cCHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 456667777776665432 12223322 567788888899999999999999999875543
No 248
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.95 E-value=2.1 Score=39.29 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhc----cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHH
Q 012404 358 HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTIS 433 (464)
Q Consensus 358 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~ 433 (464)
-.-.|+.+|.-++++|+.+..++++..---|...+.. ..-+..+-.+++++..|..+.....-.......+++.+.
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3456888999999999999999988643333333332 222566778999999999988765555555678999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHH
Q 012404 434 KLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 434 ~Ll~~g~~~~k~~A~~~L~~l 454 (464)
+++..|++.-|.-|..|+..+
T Consensus 196 rIme~gSElSktvaifI~qki 216 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999888765
No 249
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.87 E-value=30 Score=39.45 Aligned_cols=217 Identities=16% Similarity=0.193 Sum_probs=117.3
Q ss_pred CchhHHHHHHHHHHHhhcCchhhhhhhhc-CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC--cchHHHHhcC
Q 012404 184 TLPDQTEAAKELRLLTKRMPSFRALFGES-HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH--DNNKKLVAET 260 (464)
Q Consensus 184 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~ 260 (464)
+...|..+-..|..++.. +.......+. ......|.+-++ +.+.-++..++.+|..+-.. .+....+..
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~q------s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k- 738 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQ------SSSSPAQASRLKCLKRLLKLLSAEHCDLIPK- 738 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHh------ccchHHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence 356777777777777763 3322221110 123334444444 23345556666655554222 123333332
Q ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHhcc----cCcchhhhcccCchHHHHHhcccC--C--HHHHHHHHHHHHHhcc
Q 012404 261 PMVIPLLMDALRSGTIETRSNAAAALFTLSA----LDSNKEVIGKSGALKPLIDLLDEG--H--QSAMKDVASAIFNLCI 332 (464)
Q Consensus 261 ~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~--~--~~~~~~al~aL~~L~~ 332 (464)
.||-++-.++.-+...+.++..+|..+.. .++.... ....|...+.++..+ . .......+-++..+..
T Consensus 739 --~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 739 --LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred --HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 35555555577789999999999998883 1111111 112455555555543 2 2222222444444433
Q ss_pred CchhhhHHHhcCcHHHHHHHH----cCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHH
Q 012404 333 THENKARAVRDGGVSVILKKI----MDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 405 (464)
Q Consensus 333 ~~~~~~~iv~~g~v~~Lv~lL----~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~ 405 (464)
.. ..+.+.+.++.+++.+ .+. .+...|++.+..++.. |+..-.-...-.++.+..+++.. ....+....
T Consensus 815 e~---~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr 890 (1176)
T KOG1248|consen 815 EF---KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVR 890 (1176)
T ss_pred HH---hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 32 2233344455555544 433 6788899999998875 66443333333577888877754 377888888
Q ss_pred HHHHHHhccCh
Q 012404 406 AILHTICLSDR 416 (464)
Q Consensus 406 ~~L~~L~~~~~ 416 (464)
.+|-.|.....
T Consensus 891 ~LlekLirkfg 901 (1176)
T KOG1248|consen 891 LLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHhC
Confidence 88887776543
No 250
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.76 E-value=0.36 Score=47.20 Aligned_cols=48 Identities=25% Similarity=0.478 Sum_probs=40.9
Q ss_pred ccCccchhhccC---cccCCCCccccHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 84 FKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 84 f~CPi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
..|-|++++|.| |.+.|+|++|-...|++|-..++-.||.++..+...
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 578899999977 899999999999999999876457899998776544
No 251
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.57 E-value=43 Score=34.60 Aligned_cols=240 Identities=12% Similarity=0.020 Sum_probs=128.1
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchH-HHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK-KLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLS 290 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~-~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls 290 (464)
.|....++..+....+ +++...+..|+..|.|++.+-..+ ..... -.+..++.=|-++ +.++...+..+|..+.
T Consensus 253 ~~lL~s~~~~la~ka~--dp~a~~r~~a~r~L~~~as~~P~kv~th~~--~~ldaii~gL~D~~~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKAT--DPSAKSRGMACRGLGNTASGAPDKVRTHKT--TQLDAIIRGLYDDLNEEVQLEAMKCLTMVL 328 (533)
T ss_pred cccHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHhccCcHHHHHhHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 5665555555543333 455678889999999998873322 22221 1344455545444 6778888877777665
Q ss_pred ccCcchhhh-cccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhH--HHhc--CcHHHHHHHHcCC-chHHHHHH
Q 012404 291 ALDSNKEVI-GKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKAR--AVRD--GGVSVILKKIMDG-VHVDELLA 364 (464)
Q Consensus 291 ~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~--iv~~--g~v~~Lv~lL~~~-~~~~~a~~ 364 (464)
..-.+...- .-..+.-.+..+..+.+++++.+|..+...|+.....+.+ +++. +...+++-.|.++ .-...|+.
T Consensus 329 ~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr 408 (533)
T KOG2032|consen 329 EKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACR 408 (533)
T ss_pred HhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence 433222211 0123345567778888899999998888888765433332 2321 2223333345555 34566888
Q ss_pred HHHHhhCCHHHHHHHH---h---cCcH------------------HHHHHHHhc-------cCChhHHHHHHHHHHHHhc
Q 012404 365 ILAMLSTNHRAVEEIG---D---LGGV------------------SCMLRIIRE-------STCDRNKENCIAILHTICL 413 (464)
Q Consensus 365 ~L~~L~~~~~~~~~i~---~---~g~i------------------~~Lv~ll~~-------~~~~~~~~~A~~~L~~L~~ 413 (464)
.....|.-.-++++.. + .+-. +-+..++.+ .+-+.+++.|...-.++..
T Consensus 409 ~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd 488 (533)
T KOG2032|consen 409 SELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVD 488 (533)
T ss_pred HHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHH
Confidence 8777776432222221 1 0000 111111111 1113444444444444443
Q ss_pred cChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 414 SDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 414 ~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
+-.+....-.........+..+.+...+++++.|.++|..+.+
T Consensus 489 ~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 489 SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 3332222222222344456666777889999999999987754
No 252
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.30 E-value=4.9 Score=36.99 Aligned_cols=147 Identities=17% Similarity=0.155 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hHHHHhcCCCChHHHH
Q 012404 190 EAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLM 268 (464)
Q Consensus 190 ~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv 268 (464)
.|+..|.-++. +++.|..+.+ +.+--.|-..|...+. ++.-.-.+-.++.++..|..+++ ....+.....++|.++
T Consensus 119 naL~lLQclaS-hPetk~~Fl~-AhiplflypfLntss~-~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 119 NALNLLQCLAS-HPETKKVFLD-AHIPLFLYPFLNTSSS-NSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHhc-Ccchheeeee-cccceeeHhhhhcccc-CCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 45555555665 8999988887 4433333444542211 12234566788999999888875 4444444557999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc----cCchH----HHH-HhcccCCHHHHHHHHHHHHHhccCchhhhH
Q 012404 269 DALRSGTIETRSNAAAALFTLSALDSNKEVIGK----SGALK----PLI-DLLDEGHQSAMKDVASAIFNLCITHENKAR 339 (464)
Q Consensus 269 ~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~----~g~i~----~Lv-~lL~~~~~~~~~~al~aL~~L~~~~~~~~~ 339 (464)
++++.|+.-.+..|+-.+..+..++..-..+.+ --+|. .++ ++.+.++.+..+.++++-..||..+..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 999999988888888777777666655444433 11222 222 223345666777777777777776665554
No 253
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.41 E-value=3.6 Score=44.48 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hHHHHhcCCCChHH
Q 012404 188 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPL 266 (464)
Q Consensus 188 ~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i~~ 266 (464)
..+++.+++||+..++..|+.|.. .-+++.+-..+. .+++..+..++..+.||..++. ....+++...-++.
T Consensus 559 n~E~L~altnLas~s~s~r~~i~k-e~~~~~ie~~~~------ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~ 631 (748)
T KOG4151|consen 559 NFEALEALTNLASISESDRQKILK-EKALGKIEELMT------EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKL 631 (748)
T ss_pred HHHHHHHhhcccCcchhhHHHHHH-HhcchhhHHHhh------cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchH
Confidence 457888999999888888888776 555555544554 5578899999999999988886 55666664456776
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccCcc-hh-hhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhc
Q 012404 267 LMDALRSGTIETRSNAAAALFTLSALDSN-KE-VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRD 343 (464)
Q Consensus 267 Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~-~~-~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~ 343 (464)
....+.........++++++-.+.....| +. ..........++.++.+++.+++...+..+.|+.... +....+...
T Consensus 632 w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~ 711 (748)
T KOG4151|consen 632 WNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFET 711 (748)
T ss_pred HHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccc
Confidence 66666666667777777777756555433 33 2233567888999999999999999999888865433 344444444
Q ss_pred CcHHHHH
Q 012404 344 GGVSVIL 350 (464)
Q Consensus 344 g~v~~Lv 350 (464)
...+.+.
T Consensus 712 ~~~~~l~ 718 (748)
T KOG4151|consen 712 EVMELLS 718 (748)
T ss_pred hHHHHHH
Confidence 4444433
No 254
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.85 E-value=0.67 Score=48.78 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=71.2
Q ss_pred hhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 170 DRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
..|+=-.+|..|... -+++..|+..+..|+..++..-. .++..|+++++ ++...++..|+.+|..++
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~------~aldfLvDMfN------DE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV------RALDFLVDMFN------DEIEVVRLKAIFALTMIS 438 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHhc------cHHHHHHHHHHHHHHHHH
Confidence 334444556666544 57788999999999987666532 46778999999 666789999999998887
Q ss_pred cCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012404 249 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTL 289 (464)
Q Consensus 249 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~L 289 (464)
.+-. |-+ .-++.+...|...++++|++.-..|.+.
T Consensus 439 ~~l~----i~e--eql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 439 VHLA----IRE--EQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHhe----ecH--HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6622 222 2466677778888888877765555543
No 255
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.70 E-value=65 Score=35.39 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=124.4
Q ss_pred HHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcch
Q 012404 175 LSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 253 (464)
Q Consensus 175 ~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~ 253 (464)
..|.++|.++ ...+.+|++.|..+-...... ....|..|.-.. +.+.+++.-.---|..-+...++
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVa------skn~EVKkLVyvYLlrYAEeqpd 104 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVA------SKNIEVKKLVYVYLLRYAEEQPD 104 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhh------ccCHHHHHHHHHHHHHHhhcCCC
Confidence 4677778554 677889998877655533332 234555666666 55788887666656555554433
Q ss_pred HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccC
Q 012404 254 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 333 (464)
Q Consensus 254 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~ 333 (464)
-..+ .|..+-+-|+.+|+.+|..|.++|..+-. .++..=.+-++-+...+.++-+++.|+.||-.|-.-
T Consensus 105 LALL-----SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 105 LALL-----SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred ceee-----eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 2221 25567778899999999888777765432 222211222333445566899999999999888665
Q ss_pred c-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHH
Q 012404 334 H-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 410 (464)
Q Consensus 334 ~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 410 (464)
+ +-+.+++ ..+=.||.+. .+.-.|+.+...+|- +.-+.+. +-...|+.++..- ++..|--.+..|..
T Consensus 174 d~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCP--erldLIH--knyrklC~ll~dv-deWgQvvlI~mL~R 243 (968)
T KOG1060|consen 174 DPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLIH--KNYRKLCRLLPDV-DEWGQVVLINMLTR 243 (968)
T ss_pred ChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHhh--HHHHHHHhhccch-hhhhHHHHHHHHHH
Confidence 4 4444333 3444556554 567778888887774 3333332 2255666666543 25666666666655
Q ss_pred Hhc
Q 012404 411 ICL 413 (464)
Q Consensus 411 L~~ 413 (464)
-|.
T Consensus 244 YAR 246 (968)
T KOG1060|consen 244 YAR 246 (968)
T ss_pred HHH
Confidence 543
No 256
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.67 E-value=0.86 Score=43.16 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=38.9
Q ss_pred cCccch-hhccCccc----CCCCccccHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 85 KCPLSK-ELMRDPVI----LASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 85 ~CPi~~-~~m~dPv~----~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
.||+|+ +...+|-+ -||||+.|-+|.-+.+..|...||.|+.++...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 489997 55777753 379999999999999999899999999887543
No 257
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=83.36 E-value=0.98 Score=33.99 Aligned_cols=44 Identities=30% Similarity=0.609 Sum_probs=31.5
Q ss_pred cCccchhhccC----cccCC-CCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 85 KCPLSKELMRD----PVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 85 ~CPi~~~~m~d----Pv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
+||=|+-=|.. ||..- |.|.|--.||.+|+.. ...||..+++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 45555544411 34433 7899999999999998 678999998753
No 258
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=83.17 E-value=0.27 Score=36.68 Aligned_cols=47 Identities=21% Similarity=0.551 Sum_probs=22.8
Q ss_pred cccCccchhhcc-C---cccC----CCCccccHHHHHHHHHc--CC--------CCCCCCccccc
Q 012404 83 EFKCPLSKELMR-D---PVIL----ASGQTFDRPYIQRWLKA--GN--------RTCPRTQQVLS 129 (464)
Q Consensus 83 ~f~CPi~~~~m~-d---Pv~~----~~g~~~~r~~I~~~~~~--~~--------~~~P~~~~~l~ 129 (464)
+..|+||+.... + |+++ .||++|=+.|+.+||.. +. ++||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999997654 2 5543 37889999999999973 11 35999998875
No 259
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.03 E-value=0.69 Score=45.16 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=37.7
Q ss_pred ccCccchhhccCcccCCCCccc-cHHHHHHHHHcCCCCCCCCcccccC
Q 012404 84 FKCPLSKELMRDPVILASGQTF-DRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~~~g~~~-~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
-.|=||+.--+|-+++||-|.. |..|-+.---. ...||+||+++..
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEE 337 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHh
Confidence 5699999999999999999987 88887665433 3569999998754
No 260
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=82.89 E-value=8 Score=42.65 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=92.1
Q ss_pred HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc--cCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 254 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 254 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
|+.+.. .++|.|++.....+...+.+-..+|.++-.+-+ +..+.. ...+|.|++-|+-++..++-.++.+|.-+.
T Consensus 861 kQRfF~--~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 861 KQRFFC--DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHHHH--hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH
Confidence 344443 368888888875555666666667776655333 344433 467888899998889999889999888765
Q ss_pred cCch-hhhHHHhcCcHHHHHHHHcCC-----chHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHH
Q 012404 332 ITHE-NKARAVRDGGVSVILKKIMDG-----VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 404 (464)
Q Consensus 332 ~~~~-~~~~iv~~g~v~~Lv~lL~~~-----~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 404 (464)
...+ ....-+ .-.||.+..+=.+. .+++.|+..|..|.. -|-..-.-.+-.++.+|.+.|.+.. ..+++.|
T Consensus 938 ~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~eA 1015 (1030)
T KOG1967|consen 938 TESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRKEA 1015 (1030)
T ss_pred HhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHHHH
Confidence 4332 222211 13466666554433 367889999999998 3443322233345667777776432 4556666
Q ss_pred HHH
Q 012404 405 IAI 407 (464)
Q Consensus 405 ~~~ 407 (464)
+++
T Consensus 1016 v~t 1018 (1030)
T KOG1967|consen 1016 VDT 1018 (1030)
T ss_pred HHH
Confidence 554
No 261
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=82.85 E-value=52 Score=37.82 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=63.1
Q ss_pred hhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc---
Q 012404 216 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL--- 292 (464)
Q Consensus 216 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--- 292 (464)
++.+.+.++.- ...+.+.+|+..|..||..-+.-..+- .++|-++.++......+|..|..+|..+...
T Consensus 424 vs~lts~IR~l-----k~~~tK~~ALeLl~~lS~~i~de~~LD---RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 424 VSVLTSCIRAL-----KTIQTKLAALELLQELSTYIDDEVKLD---RVLPYFVHLLMDSEADVRATALETLTELLALVRD 495 (1431)
T ss_pred HHHHHHHHHhh-----hcchhHHHHHHHHHHHhhhcchHHHHh---hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC
Confidence 44555555432 136788899999999987654332221 4899999999999999999999998886542
Q ss_pred -CcchhhhcccCchHHHHHhcccC
Q 012404 293 -DSNKEVIGKSGALKPLIDLLDEG 315 (464)
Q Consensus 293 -~~~~~~i~~~g~i~~Lv~lL~~~ 315 (464)
...-..|.-.-.+|.|-.|+.+.
T Consensus 496 ~~~~daniF~eYlfP~L~~l~~d~ 519 (1431)
T KOG1240|consen 496 IPPSDANIFPEYLFPHLNHLLNDS 519 (1431)
T ss_pred CCcccchhhHhhhhhhhHhhhccC
Confidence 12233344455788888888763
No 262
>PF04641 Rtf2: Rtf2 RING-finger
Probab=82.84 E-value=1.3 Score=42.43 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=32.1
Q ss_pred CcccCccchhhccCcccCC-CCccccHHHHHHHHHcC
Q 012404 82 EEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG 117 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~ 117 (464)
..++|+|+++.+.+||+.. -|+.|.+..|-.|+...
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 3678999999999999764 79999999999999874
No 263
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=82.37 E-value=6 Score=35.32 Aligned_cols=92 Identities=22% Similarity=0.202 Sum_probs=69.2
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCCh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 264 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i 264 (464)
+..+..++..+..++...+.. .+ ..++.+...|+ ++++.++..|+.+|..|...+--+. .+..+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~----ve--~~~~~l~~~L~------D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~ 65 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL----VE--PYLPNLYKCLR------DEDPLVRKTALLVLSHLILEDMIKV----KGQLF 65 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH----HH--hHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHcCceee----hhhhh
Confidence 356778888888888855433 23 46778888888 6789999999999999977653222 12233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 265 PLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 265 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
..++.++...+++++..|...+..+...
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 5677888888999999999999998875
No 264
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=82.28 E-value=0.94 Score=46.04 Aligned_cols=174 Identities=10% Similarity=0.059 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcccCcchhhhc-ccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc----hh-hhHHHhc-Cc-HHHHH
Q 012404 279 RSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH----EN-KARAVRD-GG-VSVIL 350 (464)
Q Consensus 279 ~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~----~~-~~~iv~~-g~-v~~Lv 350 (464)
+..|.+++.-+..++..+...+ -..+...+...|.+..-..++.+++++.|++..- .+ +...-+. |. +-.++
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~ 487 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKML 487 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 3344444444444554444332 2344455555555555678889999999886421 11 1111111 11 22233
Q ss_pred HHHc-----CCchHHHHHHHHHHhhCCHH-----HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHH
Q 012404 351 KKIM-----DGVHVDELLAILAMLSTNHR-----AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK 420 (464)
Q Consensus 351 ~lL~-----~~~~~~~a~~~L~~L~~~~~-----~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~ 420 (464)
..-. ...++.+|+.+|.|+...-+ +-.++ ..|.+.++..-.-.....+++-+|+.++.||..+..-..+
T Consensus 488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~-~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEI-IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHH-HHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 3221 12688889999999986321 11222 2234445443322233488999999999999987653222
Q ss_pred HHHHhhccHHHHHHHh-hcCCHHHHHHHHHHHHH
Q 012404 421 AMREEESTHGTISKLA-QDGTARAKRKATGILER 453 (464)
Q Consensus 421 ~~~~~~g~~~~L~~Ll-~~g~~~~k~~A~~~L~~ 453 (464)
.+-....+...|..|+ +..+.+++-+|+.+|..
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 3222223444555555 55577788888888754
No 265
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=82.08 E-value=8.6 Score=33.13 Aligned_cols=72 Identities=8% Similarity=0.142 Sum_probs=58.7
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~-g~~~~k~~A~~~L~~l~~ 456 (464)
++..|.+-|++. ++.++..|+.+|-.+..+.......-+....++..|.+++.. ..+.+|++...++...+.
T Consensus 38 a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 466777777765 499999999999999998887666555567899999999877 677899999999987753
No 266
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.20 E-value=37 Score=37.47 Aligned_cols=178 Identities=13% Similarity=0.101 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHh-cc
Q 012404 235 NLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDL-LD 313 (464)
Q Consensus 235 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l-L~ 313 (464)
.++-.++..|..+.........+... +++......|++.++-+--+|...+..||... ....+|-|.+- .+
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~e-kvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-------~e~il~dL~e~Y~s 813 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGE-KVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-------PEDILPDLSEEYLS 813 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHH-HHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-------chhhHHHHHHHHHh
Confidence 34455555555555443323333322 35666666666666666666666555555431 12334444442 11
Q ss_pred cC---CHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH--HHHHHHhcCcH
Q 012404 314 EG---HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR--AVEEIGDLGGV 385 (464)
Q Consensus 314 ~~---~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i 385 (464)
.. .++.+-..-.++.++.... +...+..+ -.+...+..+.++ ..+..++++|++||.--. +...+.+ .+
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e--v~ 890 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE--VL 890 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH--HH
Confidence 11 1222222235555554332 22222211 2344455555554 568889999999997432 2234443 36
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHH
Q 012404 386 SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR 423 (464)
Q Consensus 386 ~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~ 423 (464)
..++.+.+.+.+.-+++.|+.++..+-.+.....-.+.
T Consensus 891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 891 QLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred HHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 67778888777899999999999988776654433333
No 267
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=80.98 E-value=39 Score=36.20 Aligned_cols=160 Identities=18% Similarity=0.142 Sum_probs=91.6
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhh--cCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCC
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGE--SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPM 262 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~ 262 (464)
.+.+.-|+-.||.+.+....+-..+-. ....+..++..++ .++.-+--+++.|.|+-.+...+..+.....
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-------~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-------ADPANQLLVVRCLANLFSNPAGRELFMSRLE 630 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-------cchhHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344556777777777744433222221 0123344444444 2466777889999999888666665554311
Q ss_pred ChHHHHHHHhcC-CHHHHHHHHHHHHHhcc--cCcchhhhcccCchHHHHHhccc-----CCHHHHHHHHHHHHHhccCc
Q 012404 263 VIPLLMDALRSG-TIETRSNAAAALFTLSA--LDSNKEVIGKSGALKPLIDLLDE-----GHQSAMKDVASAIFNLCITH 334 (464)
Q Consensus 263 ~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~al~aL~~L~~~~ 334 (464)
.+-..+.-.+++ +...+.+.+....|++. ...+.. .|..+.|..++.. .+-++.-.++.||.+|+..+
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 111111122333 35667777777777664 222222 3444544444432 24456777889999999999
Q ss_pred hhhhHHHhcCcHHHHHHHHcC
Q 012404 335 ENKARAVRDGGVSVILKKIMD 355 (464)
Q Consensus 335 ~~~~~iv~~g~v~~Lv~lL~~ 355 (464)
.+..++.+.-.|..+++-+.+
T Consensus 707 ~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 888877776667777776653
No 268
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=1 Score=45.71 Aligned_cols=51 Identities=16% Similarity=0.380 Sum_probs=38.0
Q ss_pred CCCcccCccchhhc-----------------cCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 80 CPEEFKCPLSKELM-----------------RDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 80 ~p~~f~CPi~~~~m-----------------~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
+-...-|+||++.. ++=.++||.|.|-|.|+++|.+.-.-.||.||.|+.+
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44456699987532 1123569999999999999999534589999998864
No 269
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.10 E-value=12 Score=39.48 Aligned_cols=120 Identities=19% Similarity=0.182 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcccCCccccchhhhhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCc
Q 012404 137 HLIREMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDA 215 (464)
Q Consensus 137 ~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~ 215 (464)
...|++..++..+-....|.. ...++..+++.... +..+|..|++.|-.+|+++++.-..++
T Consensus 36 ~k~K~Laaq~I~kffk~FP~l------------~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva----- 98 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPDL------------QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA----- 98 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GGG------------HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----
T ss_pred HHHHHHHHHHHHHHHhhChhh------------HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----
Confidence 445666666666554444433 24567788888864 477888999999999997655554444
Q ss_pred hhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh---cCCHHHHHHHHHHHHH
Q 012404 216 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR---SGTIETRSNAAAALFT 288 (464)
Q Consensus 216 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~---~~~~~~~~~aa~~L~~ 288 (464)
..|+.+|+ ++++.....+-.+|..|-..+. + +.+..|..-+. +++..+|+.+...|..
T Consensus 99 -DvL~QlL~------tdd~~E~~~v~~sL~~ll~~d~-k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 99 -DVLVQLLQ------TDDPVELDAVKNSLMSLLKQDP-K-------GTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp -HHHHHHTT---------HHHHHHHHHHHHHHHHH-H-H-------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred -HHHHHHHh------cccHHHHHHHHHHHHHHHhcCc-H-------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 46888888 4454444444444444332221 1 12333444443 5677788888877754
No 270
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.02 E-value=48 Score=36.34 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=102.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCc
Q 012404 266 LLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGG 345 (464)
Q Consensus 266 ~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~ 345 (464)
-|..+|.+.....+..|..-|..+...+.+. ...+|..|+.+.+.+.++++-.---|..-+..+.+-.. =-
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LS 109 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LS 109 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----ee
Confidence 4788888887777777776666666555443 23578899999888999888766655555544433222 13
Q ss_pred HHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCc-HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHH
Q 012404 346 VSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGG-VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 422 (464)
Q Consensus 346 v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 422 (464)
|..+-+-|.++ -++..|+.+|..+=. .++. +. +-++-+... +.++.++..|+.++--|..-.++...
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRv------p~Ia-PI~llAIk~~~~-D~s~yVRk~AA~AIpKLYsLd~e~k~-- 179 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRV------PMIA-PIMLLAIKKAVT-DPSPYVRKTAAHAIPKLYSLDPEQKD-- 179 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHH-HHHHHHHHHHhc-CCcHHHHHHHHHhhHHHhcCChhhHH--
Confidence 56677777776 345556666554311 1110 00 111122232 44688888888888888887765522
Q ss_pred HHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 423 REEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 423 ~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
..++.+-+|+.+.++.+.-.|..+..-+
T Consensus 180 ----qL~e~I~~LLaD~splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 180 ----QLEEVIKKLLADRSPLVVGSAVMAFEEV 207 (968)
T ss_pred ----HHHHHHHHHhcCCCCcchhHHHHHHHHh
Confidence 3445667777777777777777665544
No 271
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=79.65 E-value=2.2 Score=29.37 Aligned_cols=40 Identities=20% Similarity=0.591 Sum_probs=28.8
Q ss_pred Cccchh--hccCcccCCCC-----ccccHHHHHHHHHcC-CCCCCCCc
Q 012404 86 CPLSKE--LMRDPVILASG-----QTFDRPYIQRWLKAG-NRTCPRTQ 125 (464)
Q Consensus 86 CPi~~~--~m~dPv~~~~g-----~~~~r~~I~~~~~~~-~~~~P~~~ 125 (464)
|-|+.+ --.+|.+.||. +.+=+.++++|+... ..+||+++
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 566664 34667788863 457999999999753 45799874
No 272
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=79.44 E-value=75 Score=32.18 Aligned_cols=136 Identities=13% Similarity=0.176 Sum_probs=90.6
Q ss_pred cCchHHHHHhcccC---CHHHHHHHHHHHHHhccCchhhhHH-HhcCcHHHHHHHHc-CC-----chHHHHHHHHHHhhC
Q 012404 302 SGALKPLIDLLDEG---HQSAMKDVASAIFNLCITHENKARA-VRDGGVSVILKKIM-DG-----VHVDELLAILAMLST 371 (464)
Q Consensus 302 ~g~i~~Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~i-v~~g~v~~Lv~lL~-~~-----~~~~~a~~~L~~L~~ 371 (464)
......|..+++.. .+.+...|+..+..+..++.....+ .+.|.++.+++.+. .+ ++....-.+|..||-
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 44556666777654 6778899999999998877655555 56799999999888 44 334445578888999
Q ss_pred CHHHHHHHHhcCcHHHHHHHHhccCCh------hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC
Q 012404 372 NHRAVEEIGDLGGVSCMLRIIRESTCD------RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG 439 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~------~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g 439 (464)
+.++.+.+.+.+.+..+++++.+...- ..-..--..+-.|.++.|.-...++ ..++..+.++..-|
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~--~~ii~~l~~l~~~g 256 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII--DAIIKILDRLVELG 256 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH--HHHHHHHHHHHHHh
Confidence 999999999999999999998753111 1122223344555666664422333 24555555554443
No 273
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=79.41 E-value=0.5 Score=51.15 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=38.5
Q ss_pred ccCccchhhccCcccCCCCccccHHHHHHHHHcC-CCCCCCCcccccCC
Q 012404 84 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSHT 131 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~ 131 (464)
+.|++|.+ ..+|++++|||.+|+.|+...+... ...||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 89999999 8888999999999999999987642 33588887765443
No 274
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.28 E-value=0.74 Score=34.33 Aligned_cols=34 Identities=24% Similarity=0.593 Sum_probs=26.7
Q ss_pred cccCC-CCccccHHHHHHHHHc--CCCCCCCCccccc
Q 012404 96 PVILA-SGQTFDRPYIQRWLKA--GNRTCPRTQQVLS 129 (464)
Q Consensus 96 Pv~~~-~g~~~~r~~I~~~~~~--~~~~~P~~~~~l~ 129 (464)
|.++- |.|.|-+.||.+|+.. +...||.+||...
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 55554 7889999999999974 3467999999653
No 275
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.12 E-value=21 Score=31.33 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=83.2
Q ss_pred CchHHHHHhcccC-CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHh
Q 012404 303 GALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGD 381 (464)
Q Consensus 303 g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 381 (464)
..++.|+++|+.+ +..++..++++|..|-.-+.-+.+....+.-... ..-.........+. ...... .-++..-
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~---~~ee~y~ 84 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-SENSNDESTDISLP-MMGISP---SSEEYYP 84 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-cccccccchhhHHh-hccCCC---chHHHHH
Confidence 4567788888876 7889999999999997766656554332111000 00000112222221 111111 2223333
Q ss_pred cCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 012404 382 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILER 453 (464)
Q Consensus 382 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~ 453 (464)
..++..|+.+|+..+-..-...++.++..+......++...+ ..+++.++..++..++..++--..-|..
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788899888643344455778888877765554544444 4788999999987777766664444443
No 276
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.64 E-value=13 Score=31.89 Aligned_cols=72 Identities=6% Similarity=0.084 Sum_probs=57.9
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g-~~~~k~~A~~~L~~l~~ 456 (464)
++..|.+-|+++ ++.++-.|+.+|-.+..+........+...+++..|.+++... .+.+|+++..++..-+.
T Consensus 42 a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 466777777765 4999999999999999887665656555678999999998754 66799999999987764
No 277
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.57 E-value=73 Score=34.60 Aligned_cols=114 Identities=21% Similarity=0.202 Sum_probs=71.3
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
.+.+..+++...+. -.++...+..|..+.......-+-+.+ +....|...|. +..+.++.+|+.+|..+-.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~------Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLK------DREPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHh------ccCchHHHHHHHHHHHHhc
Confidence 34555666666543 567778888888877633333333333 55566666665 5568999999999988753
Q ss_pred CcchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhc
Q 012404 250 HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIG 300 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~ 300 (464)
++.+- .-.++..++.++++. ++++|+.+ |.+++.+......|+
T Consensus 156 d~~de-----e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 156 DPKDE-----ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIV 199 (892)
T ss_pred CCCCC-----cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHH
Confidence 33211 112556677778765 78888875 667776655554444
No 278
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=78.27 E-value=74 Score=31.47 Aligned_cols=153 Identities=12% Similarity=0.124 Sum_probs=101.7
Q ss_pred hhhhhhhcccccccCCCChhhHHHHHHHHHcccc-Cc-chHHHHhcCCC-ChHHHHHHHhcC----C---------HHHH
Q 012404 216 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSI-HD-NNKKLVAETPM-VIPLLMDALRSG----T---------IETR 279 (464)
Q Consensus 216 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~-~~-~~~~~i~~~~~-~i~~Lv~lL~~~----~---------~~~~ 279 (464)
+..+-+.|+ +........++..|..+.. +. .....+...-+ -.+.+.+++... . +.+|
T Consensus 58 ~k~lyr~L~------~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 58 LKLLYRSLS------SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHhC------cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 444555565 3345666778888888876 33 23444443322 345666666321 1 2788
Q ss_pred HHHHHHHHHhcccCc--c-hhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH-hccCch----hhhHHHhcCcHHHHHH
Q 012404 280 SNAAAALFTLSALDS--N-KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN-LCITHE----NKARAVRDGGVSVILK 351 (464)
Q Consensus 280 ~~aa~~L~~Ls~~~~--~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~-L~~~~~----~~~~iv~~g~v~~Lv~ 351 (464)
.+....+..+....+ . +..+.+.+.+..+.+-|..+++++....+.+|.. +..+.. .|..+.....+..|..
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 888887777766442 2 3345566788999999998899999999999984 444332 4566667778889998
Q ss_pred HHcC--C----chHHHHHHHHHHhhCCHH
Q 012404 352 KIMD--G----VHVDELLAILAMLSTNHR 374 (464)
Q Consensus 352 lL~~--~----~~~~~a~~~L~~L~~~~~ 374 (464)
+-.. + .+.+.+-..|..+|+++.
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 6653 2 568889999999998643
No 279
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.54 E-value=0.89 Score=48.60 Aligned_cols=47 Identities=19% Similarity=0.421 Sum_probs=34.9
Q ss_pred cccCccchhhccCccc---CCCCccccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 83 EFKCPLSKELMRDPVI---LASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~---~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
+-.||+|..-+.|-.+ .+|+|-||..||..|... -.+||++|..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 4567888777777654 358888888888888876 5789988876643
No 280
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.05 E-value=16 Score=30.80 Aligned_cols=73 Identities=8% Similarity=0.108 Sum_probs=57.1
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc---CCHHHHHHHHHHHHHHhcc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD---GTARAKRKATGILERLKRT 457 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~---g~~~~k~~A~~~L~~l~~~ 457 (464)
++..|-+-|+++ ++.++..|+.+|-.+..+....+...+....++..|.+++.. ..+.+|+++..++......
T Consensus 38 a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 356777777766 599999999999999998876565555545777779998865 3667999999999987643
No 281
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=77.04 E-value=69 Score=30.50 Aligned_cols=199 Identities=13% Similarity=0.183 Sum_probs=113.2
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
..+++.|+..|... +..+.++-.|..+|.++- . +..++.+-++.+.+..++++.+..+|..+-..
T Consensus 66 ~~Av~~l~~vl~de----sq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDE----SQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred chhhHHHHHHhccc----ccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence 56899999998843 346778888888887653 1 23566666666566677777777777766432
Q ss_pred Cc-----chhhhc--------ccCchHHHHHhcccCCH-HH-HHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC-
Q 012404 293 DS-----NKEVIG--------KSGALKPLIDLLDEGHQ-SA-MKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG- 356 (464)
Q Consensus 293 ~~-----~~~~i~--------~~g~i~~Lv~lL~~~~~-~~-~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~- 356 (464)
+. +..... ..+-|..|-..|.+.+. .. +..|+-.|.|+-. ..+|..|++-+..+
T Consensus 131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~S 200 (289)
T KOG0567|consen 131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDS 200 (289)
T ss_pred hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccch
Confidence 21 111111 12234444444433322 11 1223333332211 12345555555543
Q ss_pred -chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhcc-CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHH
Q 012404 357 -VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK 434 (464)
Q Consensus 357 -~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ 434 (464)
-.+..++.+|..|- .--+|+.|.+.|... ..+-++-.|+.+|..++.. ..+.+|.+
T Consensus 201 alfrhEvAfVfGQl~----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------~~~~vL~e 258 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQ----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------DCVEVLKE 258 (289)
T ss_pred HHHHHHHHHHHhhcc----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------HHHHHHHH
Confidence 34555666666553 223577777776642 2366777788888876651 23456677
Q ss_pred HhhcCCHHHHHHHHHHHHHHhccc
Q 012404 435 LAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 435 Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
.+.+.++.+++.+..+|..+-.-+
T Consensus 259 ~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHhc
Confidence 777777778888888887765433
No 282
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=75.85 E-value=46 Score=35.71 Aligned_cols=156 Identities=16% Similarity=0.210 Sum_probs=89.3
Q ss_pred ChhhHHHHHHHHHccccCcchHHHHhc---CCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHH
Q 012404 233 NPNLQEDVITTLLNLSIHDNNKKLVAE---TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 309 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~---~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv 309 (464)
.++.+.-|+.+|+-+..+......+.. ...++..++..+. +.+.-+.-++++|.|+-.+..++..+... .+.+.
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESIL 633 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHh
Confidence 456666777777776666543322222 1123444444444 56778888899999998887666655442 22222
Q ss_pred Hhc---cc-CCHHHHHHHHHHHHHhccC--chhhhHHHhcCcHHHHHHHHcC---C----chHHHHHHHHHHhhCCHHHH
Q 012404 310 DLL---DE-GHQSAMKDVASAIFNLCIT--HENKARAVRDGGVSVILKKIMD---G----VHVDELLAILAMLSTNHRAV 376 (464)
Q Consensus 310 ~lL---~~-~~~~~~~~al~aL~~L~~~--~~~~~~iv~~g~v~~Lv~lL~~---~----~~~~~a~~~L~~L~~~~~~~ 376 (464)
..+ +. .+..++..-+....|++.. ..+-. .|+.+.|..++.. + ...-.++.+|.+|+..+...
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 222 22 2344444444444454432 22111 4556666655542 1 23445788899999988877
Q ss_pred HHHHhcCcHHHHHHHHhcc
Q 012404 377 EEIGDLGGVSCMLRIIRES 395 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~ll~~~ 395 (464)
..+...-.+..+++-++..
T Consensus 710 ~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHhcCHHHHHHHHHHh
Confidence 7776655688888887763
No 283
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=75.45 E-value=40 Score=32.01 Aligned_cols=121 Identities=21% Similarity=0.231 Sum_probs=77.2
Q ss_pred hhHHHHHHhhc-CC--chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 172 DHFLSLLKKMS-AT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 172 ~~i~~Lv~~Ls-~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
..+..+-..|- .+ .-.+..|...|++.-. ..+|..|++-+. .++.-.+..++-++..|-
T Consensus 154 ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~------------EeaI~al~~~l~------~~SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 154 SSVHELRAELLDETKPLFERYRAMFYLRNIGT------------EEAINALIDGLA------DDSALFRHEVAFVFGQLQ 215 (289)
T ss_pred ccHHHHHHHHHhcchhHHHHHhhhhHhhccCc------------HHHHHHHHHhcc------cchHHHHHHHHHHHhhcc
Confidence 34555555442 22 3345566666666543 245556666665 345667777777776542
Q ss_pred cCcchHHHHhcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHH
Q 012404 249 IHDNNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 326 (464)
Q Consensus 249 ~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 326 (464)
++..+|.|.+.|... ++-+|..|+.+|..++. ..+++.|.+.+.++.+-+.+.+.-+
T Consensus 216 -----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~va 274 (289)
T KOG0567|consen 216 -----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVA 274 (289)
T ss_pred -----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 335788888888654 67889999998886653 3457778888877777777777777
Q ss_pred HHHhc
Q 012404 327 IFNLC 331 (464)
Q Consensus 327 L~~L~ 331 (464)
|..+-
T Consensus 275 ldm~e 279 (289)
T KOG0567|consen 275 LDMLE 279 (289)
T ss_pred HHHHH
Confidence 76543
No 284
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.32 E-value=1e+02 Score=34.72 Aligned_cols=238 Identities=14% Similarity=0.144 Sum_probs=125.6
Q ss_pred CCchhhhhhhccccccc--CCCChhhHHHHHHHHHccc----cCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHH
Q 012404 213 HDAIPQLLSPLSESKCE--NGINPNLQEDVITTLLNLS----IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAAL 286 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~--~~~~~~~~~~A~~~L~~Ls----~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L 286 (464)
.|.++.++++|.+.... +..++.-.+-|+.++.+|+ +.+..+..+-.- .++.+...++++.--.|..|++++
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f--lv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF--LVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH--HHHHhhHhhcCchhHHHHHHHHHH
Confidence 36778888888744321 1224555666777777764 222222222111 233344455666677899999999
Q ss_pred HHhcccC-cchhhhcccCchHHHHHhcc-cCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc--CCchHHHH
Q 012404 287 FTLSALD-SNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM--DGVHVDEL 362 (464)
Q Consensus 287 ~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~--~~~~~~~a 362 (464)
...+..+ .+...+ ..+++.....|. +.+..++..|+-||..+-.+.+--..-++.-+.|.+-++|. +.--.+.-
T Consensus 487 ~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~L 564 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDL 564 (1010)
T ss_pred HHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHH
Confidence 9998543 222222 234566666666 55667999999999998877653333233323333333332 11111222
Q ss_pred HHHHHHhh-CCHHHH----HHHHhcCcHHHHHHHHhc--c---CChhHHHHHHHHHHHHhccC--hhhHHHHHH--hhcc
Q 012404 363 LAILAMLS-TNHRAV----EEIGDLGGVSCMLRIIRE--S---TCDRNKENCIAILHTICLSD--RTKWKAMRE--EEST 428 (464)
Q Consensus 363 ~~~L~~L~-~~~~~~----~~i~~~g~i~~Lv~ll~~--~---~~~~~~~~A~~~L~~L~~~~--~~~~~~~~~--~~g~ 428 (464)
..++..+. ..++-- ..+.+ ......+++++. + .++.-+..|.++|..+..-- -+....+.+ +...
T Consensus 565 t~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~ 643 (1010)
T KOG1991|consen 565 TNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIV 643 (1010)
T ss_pred HHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 23333332 223222 12222 245667788874 1 12344455666666654310 011122222 2456
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 429 HGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 429 ~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
.+++..++++.-...-+.+..++..+.
T Consensus 644 l~vi~~iL~~~i~dfyeE~~ei~~~~t 670 (1010)
T KOG1991|consen 644 LPVIGFILKNDITDFYEELLEIVSSLT 670 (1010)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 667777787777777777777766553
No 285
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=75.16 E-value=1.9 Score=47.17 Aligned_cols=49 Identities=14% Similarity=0.462 Sum_probs=36.2
Q ss_pred CCCcccCccchhhcc--CcccCC------CCccccHHHHHHHHHc-CCCCCCCCccccc
Q 012404 80 CPEEFKCPLSKELMR--DPVILA------SGQTFDRPYIQRWLKA-GNRTCPRTQQVLS 129 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~--dPv~~~------~g~~~~r~~I~~~~~~-~~~~~P~~~~~l~ 129 (464)
..++--|+||..++. |- .+| |.|.|--+|+.+|+.. ++.+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr-~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDR-SLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhc-cCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 455567999999864 43 233 5577888999999975 5678999997553
No 286
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.16 E-value=1.2e+02 Score=33.21 Aligned_cols=31 Identities=6% Similarity=0.144 Sum_probs=18.7
Q ss_pred chHHHHHhcccCCHHHHHHHHHHHHHhccCc
Q 012404 304 ALKPLIDLLDEGHQSAMKDVASAIFNLCITH 334 (464)
Q Consensus 304 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~ 334 (464)
.+--++.+|++++.+++..++....-|+...
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 3334455666666677777777666665544
No 287
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=74.87 E-value=71 Score=34.19 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=89.0
Q ss_pred CchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcch----HHHHh--cCCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 012404 214 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN----KKLVA--ETPMVIPLLMDALRSGTIETRSNAAAALF 287 (464)
Q Consensus 214 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~----~~~i~--~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~ 287 (464)
..+-.|+.+|+. .+.+..+....-+.. .. ... ...+. ..+.++..+.+.++++...... ++.++.
T Consensus 311 ~~f~~lv~~lR~------~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~e-a~~~~~ 381 (574)
T smart00638 311 AKFLRLVRLLRT------LSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLE-AAQLLA 381 (574)
T ss_pred HHHHHHHHHHHh------CCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHH
Confidence 456667777773 234444444444433 11 111 11222 2234566677777776433222 222222
Q ss_pred Hhccc-CcchhhhcccCchHHHHHhcccC----CHHHHHHHHHHHHHhc----cCchhhhHHHhcCcHHHHHHHHcCC--
Q 012404 288 TLSAL-DSNKEVIGKSGALKPLIDLLDEG----HQSAMKDVASAIFNLC----ITHENKARAVRDGGVSVILKKIMDG-- 356 (464)
Q Consensus 288 ~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~al~aL~~L~----~~~~~~~~iv~~g~v~~Lv~lL~~~-- 356 (464)
.+... .... ...+..+..|+.++ .+.+...|+.++++|. ...+.+...+....++.|.+.|...
T Consensus 382 ~~~~~~~~Pt-----~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~ 456 (574)
T smart00638 382 VLPHTARYPT-----EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVS 456 (574)
T ss_pred HHHHhhhcCC-----HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHh
Confidence 22211 1111 22356677777653 4456666666666664 3333332223234666666666431
Q ss_pred ----chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHh--ccCChhHHHHHHHHHHHHhccChhh
Q 012404 357 ----VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR--ESTCDRNKENCIAILHTICLSDRTK 418 (464)
Q Consensus 357 ----~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~--~~~~~~~~~~A~~~L~~L~~~~~~~ 418 (464)
.-+..++.+|.|+..- ..+..|..++. ...+...+..|+++|..++...+..
T Consensus 457 ~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~ 514 (574)
T smart00638 457 KGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK 514 (574)
T ss_pred cCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH
Confidence 1122355555555421 12344444444 1234678899999999888766543
No 288
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.86 E-value=55 Score=35.66 Aligned_cols=154 Identities=12% Similarity=0.143 Sum_probs=84.6
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHh-cccCCHHHHHHHHHHHHHhccCchhhhHHH
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDL-LDEGHQSAMKDVASAIFNLCITHENKARAV 341 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~al~aL~~L~~~~~~~~~iv 341 (464)
+-+.+-+++.+.++-.|...+-++.. +-.. -++.++|..|+.. +++.+.++++.|..+|.-++..+.
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~al-Ay~G-----Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------ 587 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLAL-AYVG-----TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------ 587 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHH-HHhc-----cCchhhHHHhhcccccccchHHHHHHHHHheeeEecCh------
Confidence 44545555656666666655443321 1111 1234677778777 455688999999999986665442
Q ss_pred hcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhh
Q 012404 342 RDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 418 (464)
Q Consensus 342 ~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~ 418 (464)
...|..|.+|... -++-.++.+|.--|.+.-.+.++ .|++-|-.+...-+++.|+-++..+.....+.
T Consensus 588 --~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi-------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 588 --EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI-------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred --hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH-------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 2345667777643 56777888888888765544443 12222222323556666666665554433222
Q ss_pred HHHHHHhhccHHHHHHHhhcC
Q 012404 419 WKAMREEESTHGTISKLAQDG 439 (464)
Q Consensus 419 ~~~~~~~~g~~~~L~~Ll~~g 439 (464)
...-+ .++...+.++..+.
T Consensus 659 ~~pkv--~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 659 LCPKV--NGFRKQLEKVINDK 677 (929)
T ss_pred cCchH--HHHHHHHHHHhhhh
Confidence 11222 24455555554443
No 289
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=74.80 E-value=68 Score=35.82 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=105.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC-CHHHHHHHHHHHHHhccCchhhhHHHh
Q 012404 264 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVR 342 (464)
Q Consensus 264 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~iv~ 342 (464)
-+.+-.-+.+....-|..|+..+................|.+..++.....+ +..+...|+..|..++..-..-..=..
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 3444444556666777777776666555433112223346666666665544 778888888888888764322222233
Q ss_pred cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh--hh
Q 012404 343 DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR--TK 418 (464)
Q Consensus 343 ~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~--~~ 418 (464)
.++.|.|++-+.+. .+++.++.++...+... .-...++.+..+++++. +..+......+........ ..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKN-PQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHhhcCCcCc
Confidence 46788888888764 66777776666665410 01122455666677654 7777665555554444332 11
Q ss_pred HHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 419 WKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 419 ~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
.+..+ .+.++.++....+-+..++..|..++--+
T Consensus 408 ~~~t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 408 EKETV--KTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred chhhH--HHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 12223 25666666666666777777777666543
No 290
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=74.80 E-value=9 Score=33.80 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=64.7
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcC-CCChHHHHHHHhcC-CHHHHHHHHHHHHHhccc
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAET-PMVIPLLMDALRSG-TIETRSNAAAALFTLSAL 292 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~-~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~ 292 (464)
.+..+..+|+ +.++..+-.++..+.-.....+ ...+... +..+..|+.+|+.. ++.+++.++.+|..|-..
T Consensus 26 l~~ri~~LL~------s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 26 LVTRINSLLQ------SKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHhC------CCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4455666776 4456666666666655544332 2223222 23677888999876 567788888887776543
Q ss_pred C----cchhhhcc---cCchHHHHHhcccCCHHHHHHHHHHHHHhccC
Q 012404 293 D----SNKEVIGK---SGALKPLIDLLDEGHQSAMKDVASAIFNLCIT 333 (464)
Q Consensus 293 ~----~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~ 333 (464)
- +....+.- .+.++.+++++++ ......++.+|..|-..
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 2 22223322 3566666777664 45667777777776543
No 291
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.15 E-value=35 Score=37.70 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=102.8
Q ss_pred hcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHH
Q 012404 272 RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILK 351 (464)
Q Consensus 272 ~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~ 351 (464)
.++-+.++.++...|..+......+..+...+++...++.|++.++=+--+|...+..||.- .....+|-|.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 34445678888888888887666677777789999999999988777777777777777643 33456677766
Q ss_pred -HHcCC-----chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHH
Q 012404 352 -KIMDG-----VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE 424 (464)
Q Consensus 352 -lL~~~-----~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~ 424 (464)
+.... +.+-..-.++.++... .+-.....+ -.+...+..++.. +..-+..+++.|.++|....-.....+
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~- 886 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF- 886 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH-
Confidence 33321 2222222344444321 111111111 1234445555533 355678888888888876553333433
Q ss_pred hhccHHHHHHHhh-cCCHHHHHHHHHHHHHHhc
Q 012404 425 EESTHGTISKLAQ-DGTARAKRKATGILERLKR 456 (464)
Q Consensus 425 ~~g~~~~L~~Ll~-~g~~~~k~~A~~~L~~l~~ 456 (464)
......++.+.+ +|..-+||.|.-++..+-.
T Consensus 887 -~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 887 -HEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred -HHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 233444444443 4566788888888876644
No 292
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=73.74 E-value=21 Score=30.48 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=56.7
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc------CCHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~------g~~~~k~~A~~~L~~l~~ 456 (464)
++..|.+-|++.+ +.++-.|+.+|-.+..+....+...+....++.-|++++.. ....+|++...++..-+.
T Consensus 39 a~rai~krl~~~n-~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQ-EKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4667777787664 99999999999999998876666655567899899999853 356799999999987653
No 293
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.54 E-value=4.1 Score=39.65 Aligned_cols=62 Identities=19% Similarity=0.340 Sum_probs=46.1
Q ss_pred cCccchhhccC------cccCCCCccccHHHHHHHHHcCCCCCCCCccccc-----CCCCcchHHHHHHHHHH
Q 012404 85 KCPLSKELMRD------PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS-----HTILTPNHLIREMISQW 146 (464)
Q Consensus 85 ~CPi~~~~m~d------Pv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~-----~~~l~~n~~lk~~i~~~ 146 (464)
.|-||.+.+.+ |-++-|||++|..++...+..+...|||+|.+.. ...+..|+.+-+.++..
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 35555554433 5566699999999999999887778999999842 23577888888888765
No 294
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.32 E-value=1.9e+02 Score=32.79 Aligned_cols=132 Identities=10% Similarity=0.085 Sum_probs=77.8
Q ss_pred CChHHHHHHHh------cC--CHHHHHHHHHHHHHhcccC----cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 262 MVIPLLMDALR------SG--TIETRSNAAAALFTLSALD----SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 262 ~~i~~Lv~lL~------~~--~~~~~~~aa~~L~~Ls~~~----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
+.++.++++|. .. ++.-+..|..++.+|+..- ..+..+ +.=.+..+...++++..-.+..|++.+..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 46777888886 22 4667777888888887421 122222 22234455556666666788899999999
Q ss_pred hccCc-hhhhHHHhcCcHHHHHHHHc-CC--chHHHHHHHHHHhhCCHH-HHHHHHhc--CcHHHHHHHHhccC
Q 012404 330 LCITH-ENKARAVRDGGVSVILKKIM-DG--VHVDELLAILAMLSTNHR-AVEEIGDL--GGVSCMLRIIREST 396 (464)
Q Consensus 330 L~~~~-~~~~~iv~~g~v~~Lv~lL~-~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~--g~i~~Lv~ll~~~~ 396 (464)
.|.-+ .+...+. .++......|. +. .++-.|+-+|.-+-.+.+ ....+..+ +.+..|+++.+...
T Consensus 489 ~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 98433 3322222 24444555555 33 677777777777776543 33434333 44666777776543
No 295
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=71.12 E-value=2.6 Score=31.62 Aligned_cols=34 Identities=9% Similarity=0.274 Sum_probs=25.5
Q ss_pred CcccCccchhhccCcccCCCCccccHHHHHHHHHcC
Q 012404 82 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG 117 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~ 117 (464)
...+||+|++.+..-.++|+ .-.|..|++|+.++
T Consensus 38 ~~~~~P~t~~~l~~~~l~pn--~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 38 NGGTDPFTRQPLSESDLIPN--RALKSAIEEWCAEN 71 (73)
T ss_dssp TSSB-TTT-SB-SGGGSEE---HHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCcCCcccceEC--HHHHHHHHHHHHHc
Confidence 47889999999887778886 56999999999874
No 296
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=70.14 E-value=1.3e+02 Score=31.16 Aligned_cols=178 Identities=13% Similarity=0.074 Sum_probs=96.5
Q ss_pred HHHHHHhhcCC--chhHHHHHHHHHHHhh-cCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 174 FLSLLKKMSAT--LPDQTEAAKELRLLTK-RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 174 i~~Lv~~Ls~~--~~~~~~a~~~L~~L~~-~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
+..++..++++ .+.+..|+..|..+.. .+-..++.... ..+..+++.|+. +.+...+..|+++|..+..+
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d-----~~~~~~k~laLrvL~~ml~~ 360 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSD-----SEDEIIKKLALRVLREMLTN 360 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHcc-----chhhHHHHHHHHHHHHHHHh
Confidence 44455555544 5667788887765544 34445555444 356677788874 35677888999999888765
Q ss_pred cchHHHHhcCCCChHHHHHHH---hcCCHHHHHHHHHH-HHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHH
Q 012404 251 DNNKKLVAETPMVIPLLMDAL---RSGTIETRSNAAAA-LFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 326 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL---~~~~~~~~~~aa~~-L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 326 (464)
... .+... .--.+.++| +....++...|... +.-++.....+. |..+..++...+......++..
T Consensus 361 Q~~--~l~Ds--tE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm 429 (516)
T KOG2956|consen 361 QPA--RLFDS--TEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKM 429 (516)
T ss_pred chH--hhhch--HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHH
Confidence 532 22221 222334444 44445555555543 444555443322 2223333333444444445555
Q ss_pred HHHhccCch--hhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012404 327 IFNLCITHE--NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 370 (464)
Q Consensus 327 L~~L~~~~~--~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 370 (464)
+..|+..-. .-..+ =....|.+++.-.+. .++..|+..|..+.
T Consensus 430 ~Tkl~e~l~~EeL~~l-l~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 430 LTKLFERLSAEELLNL-LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHhhcCHHHHHHh-hhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 555554321 11111 125778888877654 56777777766665
No 297
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=69.75 E-value=28 Score=29.62 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=55.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHH---HHHHHHHHHHHHhc
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TAR---AKRKATGILERLKR 456 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g-~~~---~k~~A~~~L~~l~~ 456 (464)
+..|.+-|+++ ++.++..|+.+|-.+..+....+...+....++..|.+++... ... +|+++..+|.....
T Consensus 44 ~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 55677777765 4999999999999999988766666665667999999987654 443 89999999987653
No 298
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=69.55 E-value=33 Score=32.79 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHccccCcch--------HHHHhcCCCChHHHHHHHhcCC----HHHHHHHHHHHHHhcc
Q 012404 234 PNLQEDVITTLLNLSIHDNN--------KKLVAETPMVIPLLMDALRSGT----IETRSNAAAALFTLSA 291 (464)
Q Consensus 234 ~~~~~~A~~~L~~Ls~~~~~--------~~~i~~~~~~i~~Lv~lL~~~~----~~~~~~aa~~L~~Ls~ 291 (464)
+...+.++..|..|....++ +-.+.-- +.+|.++.-+.+++ .......|..|..++.
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~l-a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~ 144 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLL-ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE 144 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHH-HHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence 45667777777777554332 2211111 24566666666666 1344566677777774
No 299
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.30 E-value=1.1 Score=42.35 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=32.6
Q ss_pred cccCccchhhccCcccCCCCccc-cHHHHHHHHHcCCCCCCCCcccc
Q 012404 83 EFKCPLSKELMRDPVILASGQTF-DRPYIQRWLKAGNRTCPRTQQVL 128 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~-~r~~I~~~~~~~~~~~P~~~~~l 128 (464)
+.+|-||++.-+|=|+++|||.. |-+|=.+ -..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence 78999999999999999999976 7776111 13699998843
No 300
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.00 E-value=2.2 Score=41.86 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccc
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVL 128 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l 128 (464)
.+.|..-.|-||.+-.++-+.+||||+.| |+.-.. ..+.||+||+..
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI 346 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI 346 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence 45666778999999999999999999988 432222 134599998864
No 301
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=68.81 E-value=2.1 Score=30.77 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.8
Q ss_pred ccCccchhhccCcccCCCCccccHHHHHHH
Q 012404 84 FKCPLSKELMRDPVILASGQTFDRPYIQRW 113 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~ 113 (464)
.+||+|++.+....++|+ ...|+.|++|
T Consensus 36 ~~cP~~~~~~~~~~l~~~--~~l~~~i~~~ 63 (63)
T smart00504 36 GTDPVTGQPLTHEDLIPN--LALKSAIQEW 63 (63)
T ss_pred CCCCCCcCCCChhhceeC--HHHHHHHHhC
Confidence 479999999977778886 7799999987
No 302
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=67.97 E-value=5 Score=32.29 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=29.1
Q ss_pred cCCCCCCcccCccchhhccCcc--cCCCCccccHHHHH
Q 012404 76 ETVSCPEEFKCPLSKELMRDPV--ILASGQTFDRPYIQ 111 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv--~~~~g~~~~r~~I~ 111 (464)
..+.+.++-.|++|++.+.+++ +-||||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 5566888889999999988776 45999988777764
No 303
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=67.14 E-value=1.1e+02 Score=28.57 Aligned_cols=137 Identities=16% Similarity=0.045 Sum_probs=79.9
Q ss_pred hHHHHH-hcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCCchH--HHHHHHHHHhhCCHHHHHHHH
Q 012404 305 LKPLID-LLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDGVHV--DELLAILAMLSTNHRAVEEIG 380 (464)
Q Consensus 305 i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~--~~a~~~L~~L~~~~~~~~~i~ 380 (464)
++.|+. +-+..+++.+...+.+|..++.++ .+... ++..|..+...+... .-+...+..+-...+..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 344444 334458899999999999999888 44443 334555555554333 345666666655422111
Q ss_pred hcCcHHHHHHH--Hh-----ccC--ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh-hcCCHHHHHHHHHH
Q 012404 381 DLGGVSCMLRI--IR-----EST--CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA-QDGTARAKRKATGI 450 (464)
Q Consensus 381 ~~g~i~~Lv~l--l~-----~~~--~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll-~~g~~~~k~~A~~~ 450 (464)
+.+..++.. ++ .+. ..+..-.....+..+|...|++. ...+..|..++ +.+++.++.-|..+
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g------~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG------VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH------HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 233333333 11 111 11222223457777888777642 23556677777 77788889999988
Q ss_pred HHHHhcc
Q 012404 451 LERLKRT 457 (464)
Q Consensus 451 L~~l~~~ 457 (464)
|+-+++.
T Consensus 146 l~~Lc~~ 152 (234)
T PF12530_consen 146 LAPLCEA 152 (234)
T ss_pred HHHHHHH
Confidence 8888754
No 304
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.67 E-value=4.1 Score=42.85 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=38.5
Q ss_pred cccCccchhhc----cCcccCCCCccccHHHHHHHHHcCCCCCC--CCccc--ccCCCCcchHHHHHHH
Q 012404 83 EFKCPLSKELM----RDPVILASGQTFDRPYIQRWLKAGNRTCP--RTQQV--LSHTILTPNHLIREMI 143 (464)
Q Consensus 83 ~f~CPi~~~~m----~dPv~~~~g~~~~r~~I~~~~~~~~~~~P--~~~~~--l~~~~l~~n~~lk~~i 143 (464)
-++|+||..++ ..||.+-||||.||.|.+.-... +|| +..-. .+.+..--|++|-+.+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhh
Confidence 46899997665 35999999999999999987765 466 32111 1223444556555544
No 305
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=66.54 E-value=36 Score=28.74 Aligned_cols=72 Identities=8% Similarity=0.097 Sum_probs=55.3
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CH-HHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TA-RAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g-~~-~~k~~A~~~L~~l~~ 456 (464)
++..|-+-|+++ ++.++..|+.+|-.+..+....+...+....++..|.+++... +. .+++++..++.....
T Consensus 38 a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 355677777765 4999999999999999987766655555678999999987554 33 399999999987654
No 306
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.40 E-value=39 Score=36.45 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=64.1
Q ss_pred HHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhc------CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhh
Q 012404 347 SVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDL------GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 418 (464)
Q Consensus 347 ~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~------g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~ 418 (464)
..++++|.+. .++-..+.+.+|+..+-.....+.++ ..+..|++-+. +.++.++..|+.++.-++..+...
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~-D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLS-DTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHhCcccc
Confidence 4677778766 44555667777777642211122221 12444455455 346999999999999998866421
Q ss_pred HHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 419 WKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 419 ~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
......+......-+|+.+.-++++|..++..|
T Consensus 381 ---~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 381 ---VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred ---cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 111123444555567888888999999988744
No 307
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.94 E-value=2.3e+02 Score=31.36 Aligned_cols=173 Identities=15% Similarity=0.170 Sum_probs=90.2
Q ss_pred CCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc---------
Q 012404 231 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--------- 301 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--------- 301 (464)
+....+.-+|+.++.+|.... ...+. + ++..|--++++..+..|-+|.++|..++.....+....+
T Consensus 256 ~K~emV~~EaArai~~l~~~~--~r~l~--p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd 330 (865)
T KOG1078|consen 256 HKSEMVIYEAARAIVSLPNTN--SRELA--P-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITD 330 (865)
T ss_pred chhHHHHHHHHHHHhhccccC--Hhhcc--h-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcc
Confidence 345677778888888775432 22222 1 567677778888899999999999999875543322221
Q ss_pred c---CchHHHHHhcccCCHHHHHHHHHHHHHhccC--chhhhHHH-------------hcCcHHHHHHHHcCC---chHH
Q 012404 302 S---GALKPLIDLLDEGHQSAMKDVASAIFNLCIT--HENKARAV-------------RDGGVSVILKKIMDG---VHVD 360 (464)
Q Consensus 302 ~---g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~--~~~~~~iv-------------~~g~v~~Lv~lL~~~---~~~~ 360 (464)
. =+-.++..+|+.++......-..-+.+...+ ++++.-++ ..+.+..|..+|.+. ..+.
T Consensus 331 ~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~ 410 (865)
T KOG1078|consen 331 SNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKR 410 (865)
T ss_pred cccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHH
Confidence 1 1223344455555443333333333332211 12111111 113445555555532 4455
Q ss_pred HHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh
Q 012404 361 ELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 416 (464)
Q Consensus 361 ~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~ 416 (464)
..+.++..+.. .++.++. +...|+..+.. -....-+..+|..|....|
T Consensus 411 aivd~Ii~iie~~pdsKe~-----~L~~LCefIED---ce~~~i~~rILhlLG~EgP 459 (865)
T KOG1078|consen 411 AIVDAIIDIIEENPDSKER-----GLEHLCEFIED---CEFTQIAVRILHLLGKEGP 459 (865)
T ss_pred HHHHHHHHHHHhCcchhhH-----HHHHHHHHHHh---ccchHHHHHHHHHHhccCC
Confidence 55555555554 3444432 24456666653 2344556666666665433
No 308
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.83 E-value=55 Score=35.48 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=71.3
Q ss_pred cCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcC--CchHHHHHHHHHHhhCCHHHHHHH
Q 012404 302 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTNHRAVEEI 379 (464)
Q Consensus 302 ~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~~~~~~~~i 379 (464)
.|.+..|+.-..+.+..++...+..|.-|.........-+-.+....|..-+.+ +.++..|+.+|+.+=..+..
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD---- 159 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----
Confidence 466677777777778899999999999888754444444444555555444444 37889999999988753211
Q ss_pred HhcCcHHHHHHHHhccCChhHHHHHHHHHH
Q 012404 380 GDLGGVSCMLRIIRESTCDRNKENCIAILH 409 (464)
Q Consensus 380 ~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 409 (464)
-+..++..++.+++.+.+++++..|+..+.
T Consensus 160 ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 022456778888998777888887765543
No 309
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=64.12 E-value=38 Score=28.49 Aligned_cols=103 Identities=11% Similarity=0.059 Sum_probs=65.8
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-c--------ch-hh----hcc--cCchHHHHHhcccCC----HHHHH
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-S--------NK-EV----IGK--SGALKPLIDLLDEGH----QSAMK 321 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~--------~~-~~----i~~--~g~i~~Lv~lL~~~~----~~~~~ 321 (464)
.+++-++.++++ ++.........|..+...- + .+ .. +.+ ..++..+.+++.... .+...
T Consensus 26 ~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 104 (148)
T PF08389_consen 26 DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVK 104 (148)
T ss_dssp THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHH
T ss_pred hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 466667777766 4555656666666654311 1 01 11 111 344555555555432 78889
Q ss_pred HHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHH
Q 012404 322 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAIL 366 (464)
Q Consensus 322 ~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L 366 (464)
.++.++......-+ -..+.+.+.++.+.++|.++..++.|+.+|
T Consensus 105 ~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWISWIP-IELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 99999998887443 344566779999999998888899988775
No 310
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.82 E-value=38 Score=36.75 Aligned_cols=83 Identities=22% Similarity=0.172 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHh
Q 012404 233 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDL 311 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l 311 (464)
+.+++..|+.+|.-....+ +...|..|.+|... |+.+|..++-+|.--|....++..| ..|=.|
T Consensus 568 nDDVrRaAVialGFVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl 632 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPL 632 (929)
T ss_pred chHHHHHHHHHheeeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhh
Confidence 3445555555554433322 23456667777654 6777777777777666554444433 222233
Q ss_pred cccCCHHHHHHHHHHHHHh
Q 012404 312 LDEGHQSAMKDVASAIFNL 330 (464)
Q Consensus 312 L~~~~~~~~~~al~aL~~L 330 (464)
.++...=++.-|+.++.-+
T Consensus 633 ~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 633 TSDPVDFVRQGALIALAMI 651 (929)
T ss_pred hcChHHHHHHHHHHHHHHH
Confidence 3333333555565555543
No 311
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=63.65 E-value=54 Score=28.71 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=76.0
Q ss_pred CChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHH
Q 012404 262 MVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARA 340 (464)
Q Consensus 262 ~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~i 340 (464)
..++.|.++|+.+ +...|..+.++|+.|-..|..+.+....+.= .- .-...+.......+ ...+.+.. -...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~--~~~~~~~~~~~~~l-~~~~~~~~---~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SK--SSENSNDESTDISL-PMMGISPS---SEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-cc--ccccccccchhhHH-hhccCCCc---hHHH
Confidence 3567788888877 6899999999999999988777664332111 00 00011111111111 11122111 1222
Q ss_pred HhcCcHHHHHHHHcCCc---hHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHH
Q 012404 341 VRDGGVSVILKKIMDGV---HVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTI 411 (464)
Q Consensus 341 v~~g~v~~Lv~lL~~~~---~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L 411 (464)
.-.-++..|++.|+++. -...++.++.++... ..... +.. -.+|.++..++... +..+|.-..-|..|
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~-~L~-~viP~~l~~i~~~~-~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVP-YLP-QVIPIFLRVIRTCP-DSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchh-HHH-HHhHHHHHHHHhCC-HHHHHHHHHHHHHH
Confidence 33347788999888763 233456666555533 12221 121 25788888888643 56666655555443
No 312
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.45 E-value=5.1 Score=39.62 Aligned_cols=45 Identities=22% Similarity=0.494 Sum_probs=32.1
Q ss_pred CCcccCccchhhccCcc----cCC-CCccccHHHHHHHHHcC--CCCCCCCcc
Q 012404 81 PEEFKCPLSKELMRDPV----ILA-SGQTFDRPYIQRWLKAG--NRTCPRTQQ 126 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv----~~~-~g~~~~r~~I~~~~~~~--~~~~P~~~~ 126 (464)
|..-.|.||-+.. +-+ -+. |||+|.-.|+++|+.-. +.+||.|+-
T Consensus 2 pi~A~C~Ic~d~~-p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 2 PIMAECHICIDGR-PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred CccceeeEeccCC-ccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 4556799994443 222 233 99999999999999843 247999983
No 313
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.80 E-value=79 Score=37.32 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=69.2
Q ss_pred CchHHHHHhcccCCHHHHHHHHHHHHHhccCch--hhhHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhh-CCHHHHHH
Q 012404 303 GALKPLIDLLDEGHQSAMKDVASAIFNLCITHE--NKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLS-TNHRAVEE 378 (464)
Q Consensus 303 g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~--~~~~iv~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~-~~~~~~~~ 378 (464)
+.+..++..|.++.+.++..|+++|.++...+. -....++.|+...+. .+. .+++.|+..++.-. +.++....
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~---DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN---DSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc---cchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 456677778887788999999999999987664 233445555444432 233 68899998888544 34554433
Q ss_pred HHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh
Q 012404 379 IGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 379 i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
+.+ .+..=+. +.+-.++.+++++|.-+|...|+
T Consensus 893 yY~-----~i~erIl-DtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 893 YYD-----QIIERIL-DTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HHH-----HHHhhcC-CCchhHHHHHHHHHHHHHHhCCC
Confidence 332 2332222 23367888899999999887764
No 314
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=62.75 E-value=88 Score=32.73 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=70.8
Q ss_pred CcHHHHHHHHcCCchHHHHHHHHHHhhCC----HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh---
Q 012404 344 GGVSVILKKIMDGVHVDELLAILAMLSTN----HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR--- 416 (464)
Q Consensus 344 g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~--- 416 (464)
+.|+.+++.+..+.+.+--+.++. +.. ....+++.+.+.|+.|+.+|....+...+.+|+.+|..|..-+.
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~ 98 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAP 98 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 666777776665555554444444 221 23456677889999999999876678899999988888754321
Q ss_pred ---------hhHHHHHHhhccHHHHHHHhh--cCCHHHHHHHHHHHHHHhcc
Q 012404 417 ---------TKWKAMREEESTHGTISKLAQ--DGTARAKRKATGILERLKRT 457 (464)
Q Consensus 417 ---------~~~~~~~~~~g~~~~L~~Ll~--~g~~~~k~~A~~~L~~l~~~ 457 (464)
...-..+.....+..|+..+- .+...+.-...-++..+++.
T Consensus 99 ~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 99 QNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred cccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 222223334566666666543 44555666666677777654
No 315
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=62.45 E-value=5.4 Score=33.60 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=33.8
Q ss_pred cccCccchhhccC--cc-cCCCCcc------ccHHHHHHHHHcCCCCCCCCccc
Q 012404 83 EFKCPLSKELMRD--PV-ILASGQT------FDRPYIQRWLKAGNRTCPRTQQV 127 (464)
Q Consensus 83 ~f~CPi~~~~m~d--Pv-~~~~g~~------~~r~~I~~~~~~~~~~~P~~~~~ 127 (464)
..-|.||.+-..+ -| .+++|.+ |+..|+++|-.+ ...+|+.|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccce
Confidence 4559999988877 54 4667654 789999999654 6789999874
No 316
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=61.90 E-value=2.6e+02 Score=31.10 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=107.3
Q ss_pred CCChhhHHHHHHHHHccccCcc-hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHH
Q 012404 231 GINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 309 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv 309 (464)
+.+++++.+....+..+-...+ ........ ..+|.++.+-......++.+....+.-++.... ..+.. +.+.
T Consensus 448 de~~~V~lnli~~ls~~~~v~~v~g~~~~s~-slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~----~~~~ 520 (759)
T KOG0211|consen 448 DEDPIVRLNLIDKLSLLEEVNDVIGISTVSN-SLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFD----EKLA 520 (759)
T ss_pred hhhHHHHHhhHHHHHHHHhccCcccchhhhh-hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhh----HHHH
Confidence 5567777777765544422222 22222322 367878777666666777777777766665332 12222 1233
Q ss_pred Hhccc----CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--c---hHHHHHHHHHHhhCCHHHHHHHH
Q 012404 310 DLLDE----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--V---HVDELLAILAMLSTNHRAVEEIG 380 (464)
Q Consensus 310 ~lL~~----~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~---~~~~a~~~L~~L~~~~~~~~~i~ 380 (464)
.++.. ..-.+++.|+..+..|+..-. ..-.....+|.++.+..++ . ..-.++..|..+.+.+-..+.
T Consensus 521 ~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~-- 596 (759)
T KOG0211|consen 521 ELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCED-- 596 (759)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHH--
Confidence 33333 234577777777777764433 1112223566666655543 2 233355555555554443333
Q ss_pred hcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012404 381 DLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 452 (464)
Q Consensus 381 ~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~ 452 (464)
.++.+..+.... .+.++-+++..|..+-..-.. ... +.-+.+.+..|.++.+..++-.|..+..
T Consensus 597 ---Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~---~~~-~~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 597 ---LLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE---SVR-DEEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred ---HhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch---HHH-HHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 345666666543 478888888888776654321 222 2345566666665554445555444443
No 317
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=61.03 E-value=29 Score=27.69 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=48.7
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
.+..|+......++.....+...|..|..++.....+.+-|++..|-++=..-++..+...-..+
T Consensus 31 Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 31 LLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45556666677777788888999999999998888999999999987776555665555444443
No 318
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=60.68 E-value=61 Score=27.72 Aligned_cols=73 Identities=8% Similarity=0.148 Sum_probs=54.2
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHH-HHHHhhc-C--CHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT-ISKLAQD-G--TARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~-L~~Ll~~-g--~~~~k~~A~~~L~~l~~ 456 (464)
++..|-+-|+.+.++.++..|+.+|-.+..+.......-+....++.- |++++.. . ...+|.+...+++..+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 355666666544458888999999999998887666555555688886 8998853 2 34799999999988764
No 319
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=60.44 E-value=96 Score=29.62 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=82.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhccc--CCHHHHHHHHHHHHHhccCchhhhHHHhc
Q 012404 267 LMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDE--GHQSAMKDVASAIFNLCITHENKARAVRD 343 (464)
Q Consensus 267 Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~al~aL~~L~~~~~~~~~iv~~ 343 (464)
|=..|.+.++..|..|...|..+... +... ....-+..|++...+ .+......++.+|..|..... ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~~ 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FSP 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CCh
Confidence 34567788899999999888876653 2211 222235556655543 356667777888877764332 111
Q ss_pred CcHHHHHHHHcC----C----chHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 344 GGVSVILKKIMD----G----VHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 344 g~v~~Lv~lL~~----~----~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
+.+..+++.+.. . ..+..+..+|..|..+. +..+.+. +.+..+++.+....+|+.-..+..++..+..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 223333333321 1 45666888888887652 2233333 3577788888866668888777777777753
No 320
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=58.04 E-value=2.2e+02 Score=29.01 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=96.3
Q ss_pred HHHHHhcccCC-HHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc---CC---------chHHHHHHHHHHhhCC
Q 012404 306 KPLIDLLDEGH-QSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM---DG---------VHVDELLAILAMLSTN 372 (464)
Q Consensus 306 ~~Lv~lL~~~~-~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~---~~---------~~~~~a~~~L~~L~~~ 372 (464)
..++++|..+- ...+..++.++.-|+.....-.-+.....+..|+.+-. +. .+...|+..|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 44666776663 34556678888888776654433333333444444432 11 4577899999999987
Q ss_pred -HHHHHHHHhcCcHHHHHHHHhcc----CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--------
Q 012404 373 -HRAVEEIGDLGGVSCMLRIIRES----TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-------- 439 (464)
Q Consensus 373 -~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g-------- 439 (464)
+..+..+.+......+++.+... .....+-.=+++|.-|+.-.+....+++.+.++++.+.+++.+.
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 45777777777777777665431 11234445677788888777777778888899999999987432
Q ss_pred -CH---HHHHHHHHHHHHHh
Q 012404 440 -TA---RAKRKATGILERLK 455 (464)
Q Consensus 440 -~~---~~k~~A~~~L~~l~ 455 (464)
.+ .--..|..+|+.+-
T Consensus 208 ~~~l~pqe~n~a~EaLK~~F 227 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFF 227 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 11 34556777777664
No 321
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=57.95 E-value=10 Score=36.97 Aligned_cols=59 Identities=10% Similarity=0.252 Sum_probs=42.5
Q ss_pred CCCcccCccchhhccCcccCC-CCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQ 145 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~ 145 (464)
..+-+.||+|.+.|.-|+.=. +||..|-+|=. +-...||+|+.++... -+.++.+.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~~---R~~amEkV~e~ 104 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGNI---RCRAMEKVAEA 104 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCccccccccH---HHHHHHHHHHh
Confidence 555688999999999998754 89998777633 2245799999988732 34455555554
No 322
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=56.87 E-value=1.3e+02 Score=26.94 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcccCcchhhhc------------cc-CchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhc-
Q 012404 278 TRSNAAAALFTLSALDSNKEVIG------------KS-GALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD- 343 (464)
Q Consensus 278 ~~~~aa~~L~~Ls~~~~~~~~i~------------~~-g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~- 343 (464)
+|.+|..+|..++..-+.|...+ .. .-...+.-++.+++++++..|+.+|..|-.....-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 45666666766666533332222 12 23333444556679999999999999876553211111110
Q ss_pred --------------C-----cHHHHHHHHcCC---chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHH----HHHhccC
Q 012404 344 --------------G-----GVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCML----RIIREST 396 (464)
Q Consensus 344 --------------g-----~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv----~ll~~~~ 396 (464)
| .-..|+..|..+ ...-..+.+|..|... |-.|- +.|.++.++ .++.+ .
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~-~ 157 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRH-R 157 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhc-C
Confidence 0 113344445433 4566788888888875 44442 335544444 44444 3
Q ss_pred ChhHHHHHHHHHHHHhccC
Q 012404 397 CDRNKENCIAILHTICLSD 415 (464)
Q Consensus 397 ~~~~~~~A~~~L~~L~~~~ 415 (464)
+..++..++.++..+....
T Consensus 158 d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCcHHHHHHHHHHHHHcCC
Confidence 4788888888888776644
No 323
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=56.05 E-value=24 Score=28.65 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccC
Q 012404 355 DGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIREST 396 (464)
Q Consensus 355 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 396 (464)
+.--....+..|..|+..|+--..+++.|+++.|+.+|.+.+
T Consensus 59 SE~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN 100 (108)
T PF08216_consen 59 SEVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHEN 100 (108)
T ss_pred hHHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCC
Confidence 333456678888899999998889999999999999998654
No 324
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=56.05 E-value=4.6 Score=38.77 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=20.0
Q ss_pred cccCccchhhcc--Cc-ccCCCCccccHHH
Q 012404 83 EFKCPLSKELMR--DP-VILASGQTFDRPY 109 (464)
Q Consensus 83 ~f~CPi~~~~m~--dP-v~~~~g~~~~r~~ 109 (464)
.|.||+|++.|. +. ..-++||+||..-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999985 33 3345799998765
No 325
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=55.91 E-value=2.1e+02 Score=28.19 Aligned_cols=162 Identities=19% Similarity=0.170 Sum_probs=104.3
Q ss_pred HHHHHHhhcCC-chhHHHHHHHHHHHhh-cCchhhhhhhhcCC-chhhhhhhcccccccCCC-----C--hhhHHHHHHH
Q 012404 174 FLSLLKKMSAT-LPDQTEAAKELRLLTK-RMPSFRALFGESHD-AIPQLLSPLSESKCENGI-----N--PNLQEDVITT 243 (464)
Q Consensus 174 i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~-~~~~~r~~i~~~~g-~i~~Lv~lL~~~~~~~~~-----~--~~~~~~A~~~ 243 (464)
++.+-+.|+++ ......+++.|..++. .+......+.+.-+ -.+.|..++.....+... . +.++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 45556666554 3455567777777776 44343333332133 233445554321100000 0 2778888886
Q ss_pred HHcccc-Cc-chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-----cchhhhcccCchHHHHHhcccCC
Q 012404 244 LLNLSI-HD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-----SNKEVIGKSGALKPLIDLLDEGH 316 (464)
Q Consensus 244 L~~Ls~-~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-----~~~~~i~~~g~i~~Lv~lL~~~~ 316 (464)
+..+-. .+ ..+..+....+.+..+.+-|...++++......+|..=...+ ..|..+.+...+..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 665533 33 367777877778888888898888999999988888643332 34566777889999999887766
Q ss_pred H----HHHHHHHHHHHHhccCch
Q 012404 317 Q----SAMKDVASAIFNLCITHE 335 (464)
Q Consensus 317 ~----~~~~~al~aL~~L~~~~~ 335 (464)
+ .+...+-..|..+|.++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 6 788888899999998765
No 326
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=55.80 E-value=1.5e+02 Score=33.25 Aligned_cols=174 Identities=17% Similarity=0.060 Sum_probs=100.0
Q ss_pred cCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc--chHHHHhc
Q 012404 182 SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD--NNKKLVAE 259 (464)
Q Consensus 182 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~--~~~~~i~~ 259 (464)
++...++.+|+..+.....+ +. . .+ . .+....+.-++..-.. +.+..+...|+..|..++..- ..+....
T Consensus 264 s~~WK~R~Eale~l~~~l~e-~~-~-~~-~-~~~~~ll~~~~ki~~k--DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~- 335 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEE-AK-K-EI-V-KGYTGLLGILLKIRLK--DANINVVMLAAQILELIAKKLRPLFRKYAK- 335 (815)
T ss_pred ccchHHHHHHHHHHHHHHhc-cc-c-cc-c-cCcchHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHhcchhhHHHHH-
Confidence 44578899999988887773 22 1 11 1 2333333333321111 345666667777766664432 2222221
Q ss_pred CCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCch--hh
Q 012404 260 TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE--NK 337 (464)
Q Consensus 260 ~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~--~~ 337 (464)
++.|.+..-+.......+.....++-..+... ...-.++.+...++.++|..+..+...+.-....-+ ..
T Consensus 336 --~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 336 --NVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred --hhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 36777888887776667766666555444311 112346777888998999988887666654443222 22
Q ss_pred hHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC
Q 012404 338 ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST 371 (464)
Q Consensus 338 ~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~ 371 (464)
..-.-.+++|.++....+. +++..|..++..+-.
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2222235777887777654 677777777766653
No 327
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=54.88 E-value=1.4e+02 Score=32.98 Aligned_cols=191 Identities=17% Similarity=0.098 Sum_probs=110.7
Q ss_pred HHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChH--HHHHHH
Q 012404 194 ELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIP--LLMDAL 271 (464)
Q Consensus 194 ~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~--~Lv~lL 271 (464)
.|.+...+++.+.+.+.+ .|++..+...+... ...+.+..++..+.|++...+++....... .+. .+-.++
T Consensus 494 ~l~~~t~~~~~~C~~~l~-~~g~~~~~~~l~~f-----~~~~~~~~il~~l~n~~~~~~~~~~~~~~~-~~~~~~f~~~~ 566 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLD-NGGMKLLFKCLESF-----DNEELHRKILGLLGNLAEVLELRELLMIFE-FIDFSVFKVLL 566 (699)
T ss_pred HHHhhhcCCHHHHHHHHh-cccHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHH
Confidence 677888888888888999 89999999999864 256889999999999988776544333221 121 222344
Q ss_pred hcCCH-HHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHH-H
Q 012404 272 RSGTI-ETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSV-I 349 (464)
Q Consensus 272 ~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~-L 349 (464)
...+. +.-..++..|..+....+. -...+. .+.+.+.-..++... .....++.......+ +
T Consensus 567 ~~w~~~ersY~~~siLa~ll~~~~~---~~~~~~-----------r~~~~~~l~e~i~~~---~~~~~~~~~~~~f~~~~ 629 (699)
T KOG3665|consen 567 NKWDSIERSYNAASILALLLSDSEK---TTECVF-----------RNSVNELLVEAISRW---LTSEIRVINDRSFFPRI 629 (699)
T ss_pred hhcchhhHHHHHHHHHHHHHhCCCc---Cccccc-----------hHHHHHHHHHHhhcc---CccceeehhhhhcchhH
Confidence 44444 6666777777777665443 111110 111111112222222 222222222222222 4
Q ss_pred HHHHc---CCchHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHH
Q 012404 350 LKKIM---DGVHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAIL 408 (464)
Q Consensus 350 v~lL~---~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L 408 (464)
.+++. .+..+--|++++.+++.. +++...+.+.|+++.+.++-........++.+...+
T Consensus 630 ~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 630 LRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 34443 336677788888888875 667777778888887776544322344555555444
No 328
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.33 E-value=83 Score=33.31 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=50.2
Q ss_pred CChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHH
Q 012404 232 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID 310 (464)
Q Consensus 232 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 310 (464)
.+.+++..|+-+|.-.+..| ...++..+++|... ++.+|...+.+|.--+.....+. ++..|-.
T Consensus 564 ~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~ 628 (926)
T COG5116 564 GNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEA 628 (926)
T ss_pred CchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHH
Confidence 34556666666665555444 23556677777654 67777777777765555432222 2344555
Q ss_pred hcccCCHHHHHHHHHHHHHhcc
Q 012404 311 LLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 311 lL~~~~~~~~~~al~aL~~L~~ 332 (464)
|+.+.+.=++..|+.++..+..
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHh
Confidence 5555555667777777765543
No 329
>COG5634 Uncharacterized conserved protein [Function unknown]
Probab=52.86 E-value=20 Score=31.52 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=54.0
Q ss_pred CCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcCCCCCCC
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIELPNS 157 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~~~~~~~ 157 (464)
+-..|+.|||.++..=|.=++. +.+-| .--|+.. .-.+|.-..|+...+--|+..|...|+.+.+......+++
T Consensus 56 ~d~nft~plt~~l~ql~~gl~~-q~~~~--~~~~~~~-~lldpr~MkPlPy~~~Gp~nDlNd~ie~yl~~a~~~~~t~ 129 (223)
T COG5634 56 ADLNFTDPLTEKLGQLPYGLQT-QDFPR--LDYWQDR-SLLDPRRMKPLPYADEGPRNDLNDIIEEYLSIATTQPPTS 129 (223)
T ss_pred eecccCchhHHHHhcCCcCccc-Cccch--hHHhccc-cccCHhHcCCCCcCCCCCcccHHHHHHHHHHHhccCCCce
Confidence 5568999999999998876663 13333 2335544 5668888889988888999999999999988764433443
No 330
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=51.80 E-value=65 Score=27.57 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=54.7
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
++..|.+-|..+ ..+-.|+.+|..+..+ ..-..++.+.+.+..|++++....++.+++.++.++..-+..
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 556666666654 6778899999999886 456677888889999999998655689999999999877654
No 331
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=50.73 E-value=51 Score=32.64 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcccCcchhhhcccC--chHHHHHhcccC---CHHHHHHHHHHHHHhccCchhhhHHH-------hcC
Q 012404 277 ETRSNAAAALFTLSALDSNKEVIGKSG--ALKPLIDLLDEG---HQSAMKDVASAIFNLCITHENKARAV-------RDG 344 (464)
Q Consensus 277 ~~~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~iv-------~~g 344 (464)
.+|..|...+..+.........+...+ .+..|+++++.+ ...++..|+.+|..++....-...++ .+|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 345556556655555555566666555 999999999864 56789999999999998654333332 346
Q ss_pred cHHHHHHH
Q 012404 345 GVSVILKK 352 (464)
Q Consensus 345 ~v~~Lv~l 352 (464)
.++.+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 67776664
No 332
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=50.30 E-value=69 Score=27.53 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=55.2
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccC
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 415 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~ 415 (464)
++..|.+-|.++ .++-.|+.+|..+..+ ..-..++.+...+..|++++.......+++..+.++...+...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 455666666654 6777899999999985 4567788888899999999987445899999999998876543
No 333
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=50.24 E-value=2.4e+02 Score=29.43 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHhcccCc
Q 012404 275 TIETRSNAAAALFTLSALDS 294 (464)
Q Consensus 275 ~~~~~~~aa~~L~~Ls~~~~ 294 (464)
+.++|..+...|..+...++
T Consensus 42 p~e~R~~~~~ll~~~i~~~~ 61 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQD 61 (464)
T ss_pred CHHHHHHHHHHHHHHHHccc
Confidence 34555555555555554443
No 334
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=49.37 E-value=2.2e+02 Score=26.48 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=78.0
Q ss_pred CCChhhHHHHHHHHHccccCc-chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHH
Q 012404 231 GINPNLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 309 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv 309 (464)
..+++.+...+.+|-.++.++ .+... ++..|..+.+.+..+.+.-+.+.+..+...++ +.. +.+..++
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~------v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f----~~L~~~L 80 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPP------VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF----PFLQPLL 80 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhH------HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH----HHHHHHH
Confidence 457888899999999998887 33332 34446666667766665555666666655432 221 3344444
Q ss_pred Hhc--------ccC--CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHH-cCC--chHHHHHHHHHHhhC
Q 012404 310 DLL--------DEG--HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKI-MDG--VHVDELLAILAMLST 371 (464)
Q Consensus 310 ~lL--------~~~--~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL-~~~--~~~~~a~~~L~~L~~ 371 (464)
..+ .++ ..+.....+.++..+|....+ -....++.+...| ... ..+..++.+|..||.
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 441 111 234445556788888877665 1123578888888 543 567779999999993
No 335
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=49.20 E-value=7.9 Score=26.73 Aligned_cols=13 Identities=23% Similarity=0.866 Sum_probs=11.4
Q ss_pred CCCCcccCccchh
Q 012404 79 SCPEEFKCPLSKE 91 (464)
Q Consensus 79 ~~p~~f~CPi~~~ 91 (464)
++|++|.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999974
No 336
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.12 E-value=2.8e+02 Score=28.39 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcCCCCCCCcccCCccccchhhhhhHHHHHHhhcCC-ch
Q 012404 108 PYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIELPNSVQYINEEGITEADRDHFLSLLKKMSAT-LP 186 (464)
Q Consensus 108 ~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~Ls~~-~~ 186 (464)
+.|+.|+.. .|+|+.++ .+ -+.|.-||++-..+...|. -++..|...+++. ..
T Consensus 7 ~sle~wlnr--ATdp~~~e----ed-------w~ai~~fceqinkdp~gp~-------------lAv~LlaHKiqSPqe~ 60 (594)
T KOG1086|consen 7 ESLEYWLNR--ATDPSNDE----ED-------WKAIDGFCEQINKDPEGPL-------------LAVRLLAHKIQSPQEW 60 (594)
T ss_pred ccHHHHHHh--ccCccchH----HH-------HHHHHHHHHHHhcCCCCch-------------hHHHHHHhhcCChhHH
Confidence 467888875 57888643 11 3457778887655443221 1233344444443 22
Q ss_pred hHHHHHHHHHHHhhcC-chhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc--cCcc----hHHHHhc
Q 012404 187 DQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS--IHDN----NKKLVAE 259 (464)
Q Consensus 187 ~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls--~~~~----~~~~i~~ 259 (464)
+-..|+..|-.+.+.. +.....++. -.++.-|+.+++......-.+..++...+..|+... .-++ ...++..
T Consensus 61 EAl~altvLe~cmkncGekfH~evgk-frFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lpe~~KikdaYqmLK 139 (594)
T KOG1086|consen 61 EALQALTVLEYCMKNCGEKFHEEVGK-FRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLPEEPKIKDAYQMLK 139 (594)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCcccchHHHHHHHHH
Confidence 2223344444444421 223444444 446666777665211100123455666666666542 1111 1112222
Q ss_pred CCCCh-------------------------------HHHHHHHhcCCHHHHHHHHHHHHHhcccCcch
Q 012404 260 TPMVI-------------------------------PLLMDALRSGTIETRSNAAAALFTLSALDSNK 296 (464)
Q Consensus 260 ~~~~i-------------------------------~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~ 296 (464)
..|+| ..|..+|++.+++-.+.|-..|.+|...++.|
T Consensus 140 kqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn~PeDLqaANkLIK~lVkeee~k 207 (594)
T KOG1086|consen 140 KQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEEEHK 207 (594)
T ss_pred hcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 22222 23788899999999999999999999877544
No 337
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=48.79 E-value=14 Score=29.44 Aligned_cols=26 Identities=31% Similarity=0.687 Sum_probs=22.4
Q ss_pred CCccccHHHHHHHHHcCCCCCCCCccc
Q 012404 101 SGQTFDRPYIQRWLKAGNRTCPRTQQV 127 (464)
Q Consensus 101 ~g~~~~r~~I~~~~~~~~~~~P~~~~~ 127 (464)
|.|.|--.||.+|+.. ...||...++
T Consensus 81 CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 81 CNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred cchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 6788999999999998 5789998764
No 338
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=48.30 E-value=43 Score=26.36 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCch
Q 012404 266 LLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE 335 (464)
Q Consensus 266 ~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~ 335 (464)
..+..|.++.+.+|..+...|..|....+ ...+-..+++..+...|+++++=+--+|...|..|+....
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 34566677788899999999999988665 2222235677788888888888888889999998876543
No 339
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=48.30 E-value=2e+02 Score=30.81 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=61.0
Q ss_pred CcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHH
Q 012404 344 GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKA 421 (464)
Q Consensus 344 g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 421 (464)
|.+..+++-+.++ .++..++.+|+.+..+-.-..+.+-.|.+..|.+-+... .+.++..|+.+|..+-....+.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~ne--- 166 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNE--- 166 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCCh---
Confidence 4555555555544 678889999888886644444555567777777655533 3788888998888776543322
Q ss_pred HHHhhccHHHHHHHhhcC-CHHHHHHHH
Q 012404 422 MREEESTHGTISKLAQDG-TARAKRKAT 448 (464)
Q Consensus 422 ~~~~~g~~~~L~~Ll~~g-~~~~k~~A~ 448 (464)
+-...-.|..++|.+ +.++++.|.
T Consensus 167 ---en~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 167 ---ENRIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred ---HHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 111223666677776 445666554
No 340
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.28 E-value=1.5e+02 Score=30.85 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=81.2
Q ss_pred ccCchHHHHHhc----ccCCHHHHHHHHHHHHHhccC-chhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCC
Q 012404 301 KSGALKPLIDLL----DEGHQSAMKDVASAIFNLCIT-HENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN 372 (464)
Q Consensus 301 ~~g~i~~Lv~lL----~~~~~~~~~~al~aL~~L~~~-~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~ 372 (464)
..|.+.-++..+ .+++...+..|++.|.|.+.. +.-+..... -.+..++.-|.++ ++.-.++..|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 345555554444 345667889999999999887 443333322 2455666666554 4555555555555443
Q ss_pred HHHHHHHHhcCc---HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHh--hccHHHHHHHhhcCCHHHHHHH
Q 012404 373 HRAVEEIGDLGG---VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREE--ESTHGTISKLAQDGTARAKRKA 447 (464)
Q Consensus 373 ~~~~~~i~~~g~---i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~--~g~~~~L~~Ll~~g~~~~k~~A 447 (464)
-.+.. ++.+. .-.+-.+..+. .+..+-+|..+...|+......++..+.+ -+...+|.-.+++.++.+-+.+
T Consensus 331 ~~~~~--l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 331 ASNDD--LESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred hhhcc--hhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 22221 22222 33344555544 48889898888888877655444444432 1122234444566666555555
Q ss_pred HHHHHH
Q 012404 448 TGILER 453 (464)
Q Consensus 448 ~~~L~~ 453 (464)
...++.
T Consensus 408 r~~~~~ 413 (533)
T KOG2032|consen 408 RSELRT 413 (533)
T ss_pred HHHHHh
Confidence 444443
No 341
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=48.26 E-value=94 Score=25.49 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=47.7
Q ss_pred chHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhcC
Q 012404 304 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLG 383 (464)
Q Consensus 304 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g 383 (464)
+|+.|+.-|.+.++++...|+.+|...|..+..-..++... |.| ..|. +...-+|..+-+.+.|-.-+-+.|
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~--p~l-~~L~-----~~g~~Ll~~~lS~~~Gf~~L~~~~ 80 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLR--PSL-DHLG-----DIGSPLLLRFLSTPSGFRYLNEIG 80 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcC--cHH-HHHH-----HcCHHHHHHHHcchHHHHHhcchh
Confidence 57888999988899999999999999998885444444432 222 1121 122334445555555555444445
Q ss_pred cHHHHH
Q 012404 384 GVSCML 389 (464)
Q Consensus 384 ~i~~Lv 389 (464)
.|..-+
T Consensus 81 ~v~~El 86 (115)
T PF14663_consen 81 YVEKEL 86 (115)
T ss_pred HHHHHH
Confidence 554443
No 342
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.84 E-value=4.3e+02 Score=29.29 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=84.5
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc------hHHHHh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN------NKKLVA 258 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~------~~~~i~ 258 (464)
..+++.|+-++..+-+.++ .+. .++-+.+-++|.. ..|+..+.+|...|........ +-.++.
T Consensus 148 sYVRrNAilaifsIyk~~~----~L~--pDapeLi~~fL~~-----e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~ 216 (948)
T KOG1058|consen 148 SYVRRNAILAIFSIYKNFE----HLI--PDAPELIESFLLT-----EQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIP 216 (948)
T ss_pred hhhhhhhheeehhHHhhhh----hhc--CChHHHHHHHHHh-----ccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhcc
Confidence 4567777777666555211 111 2455555566653 3367777777766654321110 111111
Q ss_pred cCCC-ChHHHHHHHh---cCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccC-
Q 012404 259 ETPM-VIPLLMDALR---SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT- 333 (464)
Q Consensus 259 ~~~~-~i~~Lv~lL~---~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~- 333 (464)
.-+. ..-.++++++ ..++..+..=..+|.+|....+....+-.+|.+-. | +.+|.+.+.|+.++..|...
T Consensus 217 ~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~---l--S~~p~alk~Aa~~~i~l~~ke 291 (948)
T KOG1058|consen 217 SFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVT---L--SNDPTALKAAASTYIDLLVKE 291 (948)
T ss_pred CccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEE---c--cCCHHHHHHHHHHHHHHHHhc
Confidence 1100 1122344443 23566666666777777665555555544443322 1 24677777777777766543
Q ss_pred chhhhHHHhc---------------CcHHHHHHHHcCC--chHHHHHHHHHHhhCC
Q 012404 334 HENKARAVRD---------------GGVSVILKKIMDG--VHVDELLAILAMLSTN 372 (464)
Q Consensus 334 ~~~~~~iv~~---------------g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~ 372 (464)
.+|..+++-. |.+--++++|..+ +++.+++.+..-|+++
T Consensus 292 sdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 292 SDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred cCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 2444333211 1122222333333 5666666666666554
No 343
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=47.83 E-value=4.3e+02 Score=29.26 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=60.1
Q ss_pred HHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCH-H
Q 012404 365 ILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTA-R 442 (464)
Q Consensus 365 ~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~-~ 442 (464)
+|+++... ++....+.+.||+..+.+.+..-.....+..+.+.|.+++...+..-..+..+.--...+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 88899885 889999999999999999999755688999999999999987643211111111111233334433333 4
Q ss_pred HHHHHHHHHHHH
Q 012404 443 AKRKATGILERL 454 (464)
Q Consensus 443 ~k~~A~~~L~~l 454 (464)
.-..|..+|..+
T Consensus 574 rsY~~~siLa~l 585 (699)
T KOG3665|consen 574 RSYNAASILALL 585 (699)
T ss_pred HHHHHHHHHHHH
Confidence 555566666544
No 344
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.68 E-value=2.1e+02 Score=27.96 Aligned_cols=132 Identities=12% Similarity=0.112 Sum_probs=77.1
Q ss_pred hHHHHHhcccCCHHHHHHHHHHHHHhccCch-hhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHH-HHHHH
Q 012404 305 LKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRA-VEEIG 380 (464)
Q Consensus 305 i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~-~~~i~ 380 (464)
+...+..|.+.+=.....++..|..|+..+. ....+.. .++..+++-+.+. .+...|+.++..|.+.-.. ...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4445666666666778888888888887653 3222222 3566667767665 5667788888888764221 111
Q ss_pred hcCcHHHHH-HHHhcc--CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHH
Q 012404 381 DLGGVSCML-RIIRES--TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI 450 (464)
Q Consensus 381 ~~g~i~~Lv-~ll~~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~ 450 (464)
....++ .++..+ +..-+++.|-.+|..+..+-... .++..|+-.+++..++++.+++.-
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhcc
Confidence 122333 333332 22556888888888877754321 223344444666666766666543
No 345
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=47.38 E-value=9.9 Score=35.08 Aligned_cols=42 Identities=21% Similarity=0.472 Sum_probs=34.2
Q ss_pred cccCccch-hhccCccc----CC-CCccccHHHHHHHHHcCCCCCCCC
Q 012404 83 EFKCPLSK-ELMRDPVI----LA-SGQTFDRPYIQRWLKAGNRTCPRT 124 (464)
Q Consensus 83 ~f~CPi~~-~~m~dPv~----~~-~g~~~~r~~I~~~~~~~~~~~P~~ 124 (464)
+-.||+|. +..-+|.+ -| |=|.+|-+|+-+.|..|...||..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~ 57 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYK 57 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 56899997 56777752 36 888899999999999988889953
No 346
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=46.57 E-value=11 Score=37.35 Aligned_cols=43 Identities=26% Similarity=0.526 Sum_probs=35.1
Q ss_pred cccCccchhhc--cCcc--cCCCCccccHHHHHHHHHcC-CCCCCCCc
Q 012404 83 EFKCPLSKELM--RDPV--ILASGQTFDRPYIQRWLKAG-NRTCPRTQ 125 (464)
Q Consensus 83 ~f~CPi~~~~m--~dPv--~~~~g~~~~r~~I~~~~~~~-~~~~P~~~ 125 (464)
++.|-.|++.+ +|-- -+||.|.|--+|.+.++.++ ..+||.||
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 67899999985 4433 48999999999999999754 56899998
No 347
>PLN03205 ATR interacting protein; Provisional
Probab=46.15 E-value=62 Score=32.59 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=70.9
Q ss_pred CchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhc-Cc-HHHHHHHHc-------CCchHHHHHHHHHHhhC-
Q 012404 303 GALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRD-GG-VSVILKKIM-------DGVHVDELLAILAMLST- 371 (464)
Q Consensus 303 g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~-g~-v~~Lv~lL~-------~~~~~~~a~~~L~~L~~- 371 (464)
..+++|++|..-++..+...+++.|..+-.+- .++.++-.. ++ .-.|++++. .+.++-.|+.++-.+..
T Consensus 323 tLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 323 SLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 34677888887777778888888777654432 233333211 11 334555543 12566667776665554
Q ss_pred -CHH-HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 372 -NHR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 372 -~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
++. .|+.+....++..+-++|+....-.+|..|+.+|+.|-.
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 433 566777777888899999975558899999998886643
No 348
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=46.02 E-value=3.2e+02 Score=30.49 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh
Q 012404 357 VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA 436 (464)
Q Consensus 357 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll 436 (464)
.+++.|+..|..++..-. .++... -.++.++.+...+ +-..+...+..+..|+.--. +++.. ..+++.+..+.
T Consensus 533 ~Ir~~aa~~l~~l~~~~G-~~w~~~-~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g---~ei~~-~~Llp~~~~l~ 605 (759)
T KOG0211|consen 533 SIREAAARNLPALVETFG-SEWARL-EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLG---QEITC-EDLLPVFLDLV 605 (759)
T ss_pred HHHHHHHHHhHHHHHHhC-cchhHH-HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhc---cHHHH-HHHhHHHHHhc
Confidence 456666666666654211 112211 2355555555433 24455555555554444322 23443 57888888999
Q ss_pred hcCCHHHHHHHHHHHHHHhcc
Q 012404 437 QDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 437 ~~g~~~~k~~A~~~L~~l~~~ 457 (464)
.+..+.++-+++..|..+-+.
T Consensus 606 ~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 606 KDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred cCCchhhhhhHHHHHHHHHhh
Confidence 998989999999888766543
No 349
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=45.89 E-value=2.8e+02 Score=26.52 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=70.6
Q ss_pred CchHHHHHhcccC--CHHHHHHHHHHHHHhccCchh--------hhHHHhcCcHHHHHHHHcCCc------hHHHHHHHH
Q 012404 303 GALKPLIDLLDEG--HQSAMKDVASAIFNLCITHEN--------KARAVRDGGVSVILKKIMDGV------HVDELLAIL 366 (464)
Q Consensus 303 g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~~~~~~--------~~~iv~~g~v~~Lv~lL~~~~------~~~~a~~~L 366 (464)
|.++.|..++-.| +....+.++..|..|.....+ |..+.=.+.+|.++.-+.++. ....++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 5666666666665 566778888888887765432 222222245566666665544 235566777
Q ss_pred HHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccC-hhhHHHHHHhhccHHHHHHHhhcCCHHHHH
Q 012404 367 AMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKR 445 (464)
Q Consensus 367 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~-~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~ 445 (464)
+.+|.. ...+.+..+......+.....++-...+...|+..- |+. +...+..|..++.+|.+-.|.
T Consensus 140 a~~a~~-------~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~------~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEA-------QGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH------EFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHh-------CCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhCCcHHHHH
Confidence 777721 111223333333222222112222222222222211 221 123444566666777767777
Q ss_pred HHHHHHHHHh
Q 012404 446 KATGILERLK 455 (464)
Q Consensus 446 ~A~~~L~~l~ 455 (464)
+...+|+.+=
T Consensus 207 ~~L~iL~~ll 216 (262)
T PF14225_consen 207 KTLQILKVLL 216 (262)
T ss_pred HHHHHHHHHh
Confidence 7777776553
No 350
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=45.45 E-value=8.6 Score=26.17 Aligned_cols=13 Identities=23% Similarity=0.866 Sum_probs=8.3
Q ss_pred CCCCcccCccchh
Q 012404 79 SCPEEFKCPLSKE 91 (464)
Q Consensus 79 ~~p~~f~CPi~~~ 91 (464)
++|+++.||+|+-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999963
No 351
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=44.58 E-value=1.2e+02 Score=25.22 Aligned_cols=71 Identities=11% Similarity=0.309 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHH-HHhhccHHHHHHHhh-----cC---CHHHHHHHHHHHHHHh
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM-REEESTHGTISKLAQ-----DG---TARAKRKATGILERLK 455 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~-~~~~g~~~~L~~Ll~-----~g---~~~~k~~A~~~L~~l~ 455 (464)
+..|.+-|++. ++.++..|+.+|..||...++.+..- ....-.+..+...-. .| ...++..|..++..+.
T Consensus 40 ~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 40 LEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 44566667754 59999999999999999887655443 333334444444432 33 3358999999998775
Q ss_pred c
Q 012404 456 R 456 (464)
Q Consensus 456 ~ 456 (464)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 352
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=44.05 E-value=95 Score=26.20 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=40.3
Q ss_pred CCcccCccchhhccCcccC-C---CCccccHHHHHHHHHc--CCCCCCCCcccccCC
Q 012404 81 PEEFKCPLSKELMRDPVIL-A---SGQTFDRPYIQRWLKA--GNRTCPRTQQVLSHT 131 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv~~-~---~g~~~~r~~I~~~~~~--~~~~~P~~~~~l~~~ 131 (464)
|.-+.|-||++.-.|.-++ | ||...|-.|-..-|.. -.+.||+|+..+..+
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4668899999999999876 4 7999999888775542 367899999887654
No 353
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=43.27 E-value=33 Score=23.87 Aligned_cols=33 Identities=21% Similarity=0.528 Sum_probs=19.6
Q ss_pred CcccCccchhhccCcccCCCCccccHHHHHHHHHc------CCCCCCCCcc
Q 012404 82 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA------GNRTCPRTQQ 126 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~------~~~~~P~~~~ 126 (464)
+.|.||.|++ .|+...+.+++.. ....||+|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 4688888665 3344444455432 2346999975
No 354
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.26 E-value=1.4e+02 Score=34.44 Aligned_cols=127 Identities=21% Similarity=0.195 Sum_probs=88.9
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCCh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 264 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i 264 (464)
++.|..|.-+|..+.--+.+.. + -..+.|...+.. ++++-++.+++.++..|+..-.|- ++ ..-
T Consensus 937 p~Lq~AAtLaL~klM~iSa~fc----e--s~l~llftimek-----sp~p~IRsN~VvalgDlav~fpnl---ie--~~T 1000 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCISAEFC----E--SHLPLLFTIMEK-----SPSPRIRSNLVVALGDLAVRFPNL---IE--PWT 1000 (1251)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH----H--HHHHHHHHHHhc-----CCCceeeecchheccchhhhcccc---cc--hhh
Confidence 5667777777776665343332 2 357888888875 567899999999998887654332 21 134
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 265 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 265 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
+.|-..|...++.+|+.|.-+|.+|-..+- |--.|-+..++.+|.++++++..-|=.....|+
T Consensus 1001 ~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1001 EHLYRRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 557777888999999999999999987653 223578888899998888877766654444443
No 355
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=43.18 E-value=1.2e+02 Score=29.13 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=49.5
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchh--hhcccCchHHHHH----hcc--------cCCHHHHHHHHHHH
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKE--VIGKSGALKPLID----LLD--------EGHQSAMKDVASAI 327 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~----lL~--------~~~~~~~~~al~aL 327 (464)
-++|.++.++.+.+++.|..++.+|..+...-.... .+.+.|..+.+-+ .|. ..+......|.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 378999999999999999999999999987543222 2455665554433 333 23556777777777
Q ss_pred HHhcc
Q 012404 328 FNLCI 332 (464)
Q Consensus 328 ~~L~~ 332 (464)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77744
No 356
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.13 E-value=2.6e+02 Score=33.34 Aligned_cols=140 Identities=14% Similarity=0.206 Sum_probs=80.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccC-chhhhHHHh
Q 012404 264 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT-HENKARAVR 342 (464)
Q Consensus 264 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~-~~~~~~iv~ 342 (464)
+..++.+|..+.+..|..|..+|.++...+.. .+....+-..+-.-+-+.+..|+++|+..+...... ++.-.+..+
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~ 895 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYD 895 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 44567777777789999999999999876632 111111222222333345778999999999854432 333333222
Q ss_pred cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCC-hh-HHHHHHHHHHHHhccC
Q 012404 343 DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC-DR-NKENCIAILHTICLSD 415 (464)
Q Consensus 343 ~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~-~~~~A~~~L~~L~~~~ 415 (464)
.+++-+.+. .++..++.+|.-+|...+.-..+. ...+++++..++ +. +++-+..++..++...
T Consensus 896 -----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 896 -----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred -----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 333333333 688999999999997533332222 234445544221 22 5666666666666543
No 357
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=42.44 E-value=11 Score=40.64 Aligned_cols=64 Identities=14% Similarity=0.383 Sum_probs=45.8
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHH--cCCCCCCCCcccccCCCCcchHHHHHHHHHH
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLK--AGNRTCPRTQQVLSHTILTPNHLIREMISQW 146 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~--~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~ 146 (464)
...||||.+...+|+.+.|-|.|++.|+-.-|. .+...||+|+...............+++++.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 456999999999999999999999999876443 4456799998665544433333444555543
No 358
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=42.44 E-value=67 Score=27.46 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=54.4
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccC--cchhhhcccCchHHHHHhccc------CCHHHHHHHHHHHHHhc
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDE------GHQSAMKDVASAIFNLC 331 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~al~aL~~L~ 331 (464)
++..|.+-|.++++..+..|+.+|-.+..+- .....|...+.+..|+.++.. .++.++...+..|..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4666788888999999999999888888754 345677778888999999963 36788888888887654
No 359
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=42.29 E-value=1.3e+02 Score=25.31 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=53.5
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHHHHHHhc--cCChhHHHHHHHHHHHHhccCh
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRE--STCDRNKENCIAILHTICLSDR 416 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~--~~~~~~~~~A~~~L~~L~~~~~ 416 (464)
++..|-+-|..+ ..+..|+.+|..+..+ +.-..++.....+..|++++.. ..+..++..++.++...+...+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 455666667654 6778899999999986 3456777776778789999975 3457899999999987766443
No 360
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=42.15 E-value=2.6e+02 Score=25.11 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=62.5
Q ss_pred CCChhhHHHHHHHHHccccCcchHHHHhc-----CCCCh--------------HHHHHHHhcC-CHHHHHHHHHHHHHhc
Q 012404 231 GINPNLQEDVITTLLNLSIHDNNKKLVAE-----TPMVI--------------PLLMDALRSG-TIETRSNAAAALFTLS 290 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~-----~~~~i--------------~~Lv~lL~~~-~~~~~~~aa~~L~~Ls 290 (464)
+.++.++..|+.+|..|-.+...--..++ .+.+. ..|+..|+.. +.........+|..|.
T Consensus 51 Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv 130 (182)
T PF13251_consen 51 DPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLV 130 (182)
T ss_pred CCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 56788999999988887555432222221 11122 2355666655 5677777888888887
Q ss_pred ccCcchhhhcccCchHHHHH----hcccCCHHHHHHHHHHHHHhccCc
Q 012404 291 ALDSNKEVIGKSGALKPLID----LLDEGHQSAMKDVASAIFNLCITH 334 (464)
Q Consensus 291 ~~~~~~~~i~~~g~i~~Lv~----lL~~~~~~~~~~al~aL~~L~~~~ 334 (464)
..-.+... ..|.++.++. ++.+.+..++..++.++..|....
T Consensus 131 ~~tPY~rL--~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 131 QATPYHRL--PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred ccCChhhc--CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 75432211 2355555544 455568888999998888886654
No 361
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.05 E-value=1.7e+02 Score=31.21 Aligned_cols=98 Identities=9% Similarity=0.155 Sum_probs=56.0
Q ss_pred ccCchHHHHHh-cccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHH
Q 012404 301 KSGALKPLIDL-LDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAV 376 (464)
Q Consensus 301 ~~g~i~~Lv~l-L~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~ 376 (464)
+.|+|..|+.. +++++.+++++|+.||.-.|..+. ..++..+++|.+. -++...+-+|.--|.+.-.+
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 35677777777 566788999999999987776543 3556667777643 34444455555555432211
Q ss_pred HHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 377 EEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
.+ +..|-.++. +..+-+++.|+-++..+..
T Consensus 621 ~a------~diL~~L~~-D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 621 VA------TDILEALMY-DTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred HH------HHHHHHHhh-CcHHHHHHHHHHHHHHHHh
Confidence 11 122223333 2235566666665555544
No 362
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=41.89 E-value=1e+02 Score=30.48 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhccCchhhhHHHhcC--cHHHHHHHHcCC-----chHHHHHHHHHHhhCCH----HHHHHH---HhcCc
Q 012404 319 AMKDVASAIFNLCITHENKARAVRDG--GVSVILKKIMDG-----VHVDELLAILAMLSTNH----RAVEEI---GDLGG 384 (464)
Q Consensus 319 ~~~~al~aL~~L~~~~~~~~~iv~~g--~v~~Lv~lL~~~-----~~~~~a~~~L~~L~~~~----~~~~~i---~~~g~ 384 (464)
++-.|+..|..+...+..-.+++..+ .+..|++++.-+ .++..|+.+|..++... +...++ +.+|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 44556666666666667777887765 899999999843 67888999999999863 333333 34466
Q ss_pred HHHHHH
Q 012404 385 VSCMLR 390 (464)
Q Consensus 385 i~~Lv~ 390 (464)
+..+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 666654
No 363
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=41.85 E-value=1.2e+02 Score=23.83 Aligned_cols=69 Identities=14% Similarity=0.017 Sum_probs=49.6
Q ss_pred HHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh
Q 012404 347 SVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 347 ~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
...+..|.++ .++.+++..|..|..... ...+.-.+.+..+...+++. ++-+--+|+..|..|+...++
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence 4455666666 789999999999998766 11112224456666777755 488999999999999998775
No 364
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.92 E-value=34 Score=34.38 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=27.9
Q ss_pred CcccCccchhhc-c--CcccCCCCccccHHHHHHHHH
Q 012404 82 EEFKCPLSKELM-R--DPVILASGQTFDRPYIQRWLK 115 (464)
Q Consensus 82 ~~f~CPi~~~~m-~--dPv~~~~g~~~~r~~I~~~~~ 115 (464)
.-|.|-||++-. - +-+.+||+|.|||+|...++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 358899998663 2 346899999999999999986
No 365
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=40.91 E-value=2.8e+02 Score=30.73 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=87.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcC--CchHHHHHHHHHHhhCC-HHHHHHHH-h
Q 012404 306 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD--GVHVDELLAILAMLSTN-HRAVEEIG-D 381 (464)
Q Consensus 306 ~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~~~a~~~L~~L~~~-~~~~~~i~-~ 381 (464)
..+...+..+++......+.++.+++.-..-..+-.... ++.-..-... +...+....+|..++.. ++....+. +
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~-~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d 522 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDE-LDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSD 522 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccC-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcC
Confidence 445555666677788888888888876553221111111 1111111111 14667788888888885 56666654 5
Q ss_pred cCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh--hhHHHHHHh------hccHHHHHHHhhc----CCHHHHHHHHH
Q 012404 382 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR--TKWKAMREE------ESTHGTISKLAQD----GTARAKRKATG 449 (464)
Q Consensus 382 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~--~~~~~~~~~------~g~~~~L~~Ll~~----g~~~~k~~A~~ 449 (464)
.+++..++.++-++. +...+.|..+|........ +..++++.. .|+...|.++... ..+++-+-...
T Consensus 523 ~~~~~~i~s~lfsp~-~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~~D 601 (727)
T PF12726_consen 523 PDAAQAIWSLLFSPD-DDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCLMD 601 (727)
T ss_pred cchhhHHHhheeCCC-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Confidence 688999999998764 8899999999999886432 222223320 1233333333322 24556666666
Q ss_pred HHHHHhcc
Q 012404 450 ILERLKRT 457 (464)
Q Consensus 450 ~L~~l~~~ 457 (464)
+|+-|++.
T Consensus 602 Ii~~Lcdp 609 (727)
T PF12726_consen 602 IIEVLCDP 609 (727)
T ss_pred HHHHHcCC
Confidence 67666654
No 366
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=40.65 E-value=25 Score=31.35 Aligned_cols=38 Identities=18% Similarity=0.540 Sum_probs=29.4
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
-+.||.|+.+|-|-+ |---+.+|..|+.+ ||.+.....
T Consensus 87 IYICPFTGKVF~DNt-----~~nPQDAIYDWvSk----CPeN~ER~~ 124 (238)
T PF10915_consen 87 IYICPFTGKVFGDNT-----HPNPQDAIYDWVSK----CPENTERQG 124 (238)
T ss_pred EEEcCCcCccccCCC-----CCChHHHHHHHHhh----CCccchhcc
Confidence 389999999998863 22357899999987 898876543
No 367
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.06 E-value=5.1e+02 Score=27.92 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=70.6
Q ss_pred cccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHH
Q 012404 247 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 326 (464)
Q Consensus 247 Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 326 (464)
...+++....++. +.+..++.-+.+.+..+|..++..|.-++..-..-......|.+..|.+-+-+..+.++..|+.+
T Consensus 78 ~~~~dpeg~~~V~--~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~ 155 (885)
T COG5218 78 DMPDDPEGEELVA--GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKV 155 (885)
T ss_pred cCCCChhhhHHHH--HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334433345553 35555666667778889999998888777543222233445777777776666677889999999
Q ss_pred HHHhcc---CchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCC
Q 012404 327 IFNLCI---THENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTN 372 (464)
Q Consensus 327 L~~L~~---~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~ 372 (464)
|..+-. +++|+. +..|+.+++++...+.=-.+|.|+..+
T Consensus 156 L~~~Qe~~~neen~~-------~n~l~~~vqnDPS~EVRr~allni~vd 197 (885)
T COG5218 156 LCYYQEMELNEENRI-------VNLLKDIVQNDPSDEVRRLALLNISVD 197 (885)
T ss_pred HHHHHhccCChHHHH-------HHHHHHHHhcCcHHHHHHHHHHHeeeC
Confidence 886643 333332 236667777653333333445666543
No 368
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=40.04 E-value=1.3e+02 Score=25.36 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=51.2
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHHHHHHhccCChh-HHHHHHHHHHHHhc
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDR-NKENCIAILHTICL 413 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~A~~~L~~L~~ 413 (464)
++..|-+-|.++ ..+..|+.+|..+..+ ..-..++.+.+.+..|+.++....... +++.++.++..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 444566666654 6778899999999886 456678888888999999988643333 88888888877655
No 369
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=39.85 E-value=12 Score=42.84 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=39.8
Q ss_pred CCCCcccCccchhhccCc-ccCCCCccccHHHHHHHHHcCCCCCCCCcc
Q 012404 79 SCPEEFKCPLSKELMRDP-VILASGQTFDRPYIQRWLKAGNRTCPRTQQ 126 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~dP-v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~ 126 (464)
...+++.|+||.++|+.- -+.-|||-||-.|+.-|+.. +..||.+..
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 366778999999999955 45669999999999999997 678999863
No 370
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=39.82 E-value=35 Score=37.16 Aligned_cols=49 Identities=8% Similarity=-0.056 Sum_probs=38.4
Q ss_pred cCCCCCCcccCccchhhccCcc----cCC---CCccccHHHHHHHHHc-----CCCCCCCC
Q 012404 76 ETVSCPEEFKCPLSKELMRDPV----ILA---SGQTFDRPYIQRWLKA-----GNRTCPRT 124 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv----~~~---~g~~~~r~~I~~~~~~-----~~~~~P~~ 124 (464)
.....++.-+|++|..-+.+|| +.| +++.+|-.||+.|.+. ....|+||
T Consensus 89 ~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC 149 (1134)
T KOG0825|consen 89 VDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC 149 (1134)
T ss_pred cCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH
Confidence 3345788899999999999977 456 7999999999999873 12357776
No 371
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=39.27 E-value=4.6e+02 Score=27.25 Aligned_cols=186 Identities=11% Similarity=0.109 Sum_probs=93.9
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hHH--HHhcCCCChHHHHHHHhc-CCHHHHHHHHHHHHHhc
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKK--LVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLS 290 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~--~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls 290 (464)
.++...++|..... ++..+-++.|+.-|..+..... ..- .+. ..+-.++++|.. .+.-.+.-|.+.|..++
T Consensus 284 ~~~~v~~~l~~~~g--~e~a~~~k~alsel~~m~~e~sfsvWeq~f~---~iL~~l~EvL~d~~~~~~k~laLrvL~~ml 358 (516)
T KOG2956|consen 284 QSALVADLLKEISG--SERASERKEALSELPKMLCEGSFSVWEQHFA---EILLLLLEVLSDSEDEIIKKLALRVLREML 358 (516)
T ss_pred hhHHHHHHHHhccC--ccchhHHHHHHHHHHHHHHccchhHHHHHHH---HHHHHHHHHHccchhhHHHHHHHHHHHHHH
Confidence 34444455543221 2334555666665555443331 110 111 134457788877 57778888999999998
Q ss_pred ccCcchhhhcccCchHHHHHhcccCCHHHHHHHHH-HHHHhccCchhhhHHHhcCcHHHHHHHHcC-C-chHHHHHHHHH
Q 012404 291 ALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS-AIFNLCITHENKARAVRDGGVSVILKKIMD-G-VHVDELLAILA 367 (464)
Q Consensus 291 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~-aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~-~-~~~~~a~~~L~ 367 (464)
.+...+-.=...=+|..+++.-.+..+++...|.. ++..|++....+.. ..+..++.. + ...-.++..+.
T Consensus 359 ~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I-------~~i~~~Ilt~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 359 TNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI-------VNISPLILTADEPRAVAVIKMLT 431 (516)
T ss_pred HhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH-------HHHhhHHhcCcchHHHHHHHHHH
Confidence 76533221111224555555555555555554444 34445544432221 112222222 1 22222333444
Q ss_pred HhhCCHHHHHHHHh--cCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 368 MLSTNHRAVEEIGD--LGGVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 368 ~L~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
.|+..= .++++.. ...+|.+++--.+. +..++..|+.+|..+...
T Consensus 432 kl~e~l-~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 432 KLFERL-SAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHhhc-CHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHHH
Confidence 454431 1122211 14677888877754 588999999999877654
No 372
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.75 E-value=5.1e+02 Score=27.61 Aligned_cols=241 Identities=17% Similarity=0.143 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCCcccCccchhhccCcccCCCC
Q 012404 24 KATELKKELQKLVRLIVDD-VDYRTETIDQARDTLCALKELKTKKRSLSLKLHETVSCPEEFKCPLSKELMRDPVILASG 102 (464)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CPi~~~~m~dPv~~~~g 102 (464)
...++.+.+..++..+.++ .+..+..|.+.++.|+.+....+..- .... . . .++....++.|-+. -+|
T Consensus 286 ~~~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~e~l~~l--~~~~-~------~-~~~~~r~~~~Dal~-~~G 354 (574)
T smart00638 286 NEVQIVEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLSEEQLEQL--WRQL-Y------E-KKKKARRIFLDAVA-QAG 354 (574)
T ss_pred chhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCHHHHHHH--HHHH-H------h-CCHHHHHHHHHHHH-hcC
Confidence 3445666677777777654 55688899999999988765443310 0000 0 0 11445566666632 244
Q ss_pred ccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHH-cCCCCCCCcccCCccccchhhhhhHHHHHHhh
Q 012404 103 QTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRS-QGIELPNSVQYINEEGITEADRDHFLSLLKKM 181 (464)
Q Consensus 103 ~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L 181 (464)
..=.=..|.+|+.++. .-+ . ...+.|... +....|+ ...+..+...+
T Consensus 355 T~~a~~~i~~~i~~~~-~~~--------------~---ea~~~~~~~~~~~~~Pt--------------~~~l~~l~~l~ 402 (574)
T smart00638 355 TPPALKFIKQWIKNKK-ITP--------------L---EAAQLLAVLPHTARYPT--------------EEILKALFELA 402 (574)
T ss_pred CHHHHHHHHHHHHcCC-CCH--------------H---HHHHHHHHHHHhhhcCC--------------HHHHHHHHHHh
Confidence 4456667777877632 111 0 111111111 1111121 23344555544
Q ss_pred cCC-----chhHHHHHHHHHHHhh----cCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 182 SAT-----LPDQTEAAKELRLLTK----RMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 182 s~~-----~~~~~~a~~~L~~L~~----~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
.+. ...+..|+-.+..+.. ..+.....+.+ ..++.|...|..... ..+.+.+.-.+.+|.|+-..
T Consensus 403 ~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~--~~~~~l~~~l~~~~~--~~~~~~~~~~LkaLGN~g~~-- 476 (574)
T smart00638 403 ESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE--ELLKYLHELLQQAVS--KGDEEEIQLYLKALGNAGHP-- 476 (574)
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH--HHHHHHHHHHHHHHh--cCCchheeeHHHhhhccCCh--
Confidence 321 2233344444443333 11111112222 356666666654321 22344455567777775332
Q ss_pred hHHHHhcCCCChHHHHHHHh-c--CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC--CHHHHHHHHHHH
Q 012404 253 NKKLVAETPMVIPLLMDALR-S--GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAI 327 (464)
Q Consensus 253 ~~~~i~~~~~~i~~Lv~lL~-~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL 327 (464)
..++.|..++. . .+...|..|+++|..++..... .+-+.|+.+..+. +.+++..|+.+|
T Consensus 477 ---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 477 ---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred ---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 24555555555 1 2467899999999988753321 2335566766553 677777777666
Q ss_pred HH
Q 012404 328 FN 329 (464)
Q Consensus 328 ~~ 329 (464)
..
T Consensus 541 m~ 542 (574)
T smart00638 541 ME 542 (574)
T ss_pred Hh
Confidence 53
No 373
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=38.48 E-value=26 Score=33.61 Aligned_cols=43 Identities=30% Similarity=0.663 Sum_probs=33.7
Q ss_pred cccCccchhhc----cCcccCCCCccccHHHHHHHHHcCCCCCCCCcc
Q 012404 83 EFKCPLSKELM----RDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQ 126 (464)
Q Consensus 83 ~f~CPi~~~~m----~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~ 126 (464)
++-|||+.+-+ .+|..++|||+.-.++.+.....+ .+||.+..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 34599998765 457789999988777777777775 89999865
No 374
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=38.33 E-value=10 Score=25.65 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=23.2
Q ss_pred ccCcccCCCCccc-cHHHHHHHHHcCCCCCCCCcccccC
Q 012404 93 MRDPVILASGQTF-DRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 93 m~dPv~~~~g~~~-~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
|.+--++.|+..| |..|+..-+.. +..||+|+.++..
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 4455566666666 99999988876 6789999998753
No 375
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=38.28 E-value=92 Score=33.82 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=72.0
Q ss_pred CCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHH-hcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHH
Q 012404 231 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI 309 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv 309 (464)
+.+..+|+.++..+-..+..-+ ...+.. -++|.|..+- +..+..++.+++.++..+... +-...+++.+.
T Consensus 400 ~~~~~iQ~~~L~~lptv~e~iD--~~~vk~-~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~------lD~~~v~d~~l 470 (700)
T KOG2137|consen 400 DSDVQIQELALQILPTVAESID--VPFVKQ-AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR------LDKAAVLDELL 470 (700)
T ss_pred CcchhhHHHHHHhhhHHHHhcc--HHHHHH-HHHHHhhcchhcccchHHHHHHHHHHHHHHHH------HHHHHhHHHHH
Confidence 5677888888887776654333 222222 2566665553 344678888888888888721 11223344444
Q ss_pred Hhc---ccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC
Q 012404 310 DLL---DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG 356 (464)
Q Consensus 310 ~lL---~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~ 356 (464)
.++ +..++..+-..+.+..++....-++..+.-+.++|.++-+...+
T Consensus 471 pi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 471 PILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 444 44577777777777777776665444455567888888877655
No 376
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.25 E-value=8e+02 Score=29.67 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhhcCch-hhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHH
Q 012404 189 TEAAKELRLLTKRMPS-FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLL 267 (464)
Q Consensus 189 ~~a~~~L~~L~~~~~~-~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~L 267 (464)
..|...|.+.-..++. .-..... .+..-|+.-|. +....++|.++.+|..|-.+.++-...-.-+..+..+
T Consensus 1015 q~aM~sIW~~Li~D~k~~vd~y~n--eIl~eLL~~lt------~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~ 1086 (1702)
T KOG0915|consen 1015 QDAMTSIWNALITDSKKVVDEYLN--EILDELLVNLT------SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAA 1086 (1702)
T ss_pred HHHHHHHHHHhccChHHHHHHHHH--HHHHHHHHhcc------chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 3556666654432322 2222222 34444555555 3345899999999999987765432221111233333
Q ss_pred HHHHhcCCHHHHHH---HHHHHHHhccc--Cc---chhhhcccCchHHHHH--hcccCCHHHHHHHHHHHHHhccCchhh
Q 012404 268 MDALRSGTIETRSN---AAAALFTLSAL--DS---NKEVIGKSGALKPLID--LLDEGHQSAMKDVASAIFNLCITHENK 337 (464)
Q Consensus 268 v~lL~~~~~~~~~~---aa~~L~~Ls~~--~~---~~~~i~~~g~i~~Lv~--lL~~~~~~~~~~al~aL~~L~~~~~~~ 337 (464)
.+....=...+|++ ++.+|..|+.- +. .+..-.-..++|.|++ ++ +.-++++..++.++.-|+......
T Consensus 1087 fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1087 FRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhh
Confidence 33332222334444 45666666541 11 1111111234444443 23 335688999999999998765432
Q ss_pred hHHHhcCcHHHHHHHHcC--C-----------chHHHHHHHHHH-hhCCHHHHHHH---Hh-------cCcHHHHHHHHh
Q 012404 338 ARAVRDGGVSVILKKIMD--G-----------VHVDELLAILAM-LSTNHRAVEEI---GD-------LGGVSCMLRIIR 393 (464)
Q Consensus 338 ~~iv~~g~v~~Lv~lL~~--~-----------~~~~~a~~~L~~-L~~~~~~~~~i---~~-------~g~i~~Lv~ll~ 393 (464)
.+---...+|.|++..+. + ....+|+..+.. .+++..--+.+ +. ...+|.+.++++
T Consensus 1166 lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R 1245 (1702)
T KOG0915|consen 1166 LKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVR 1245 (1702)
T ss_pred hcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 221223467777776653 1 111223322221 22221111111 11 124788889998
Q ss_pred ccCChhHHHHHHHHHHHHhcc
Q 012404 394 ESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 394 ~~~~~~~~~~A~~~L~~L~~~ 414 (464)
.+-.-.++-.++..+..|+.+
T Consensus 1246 ~sVgl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1246 GSVGLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred ccCCCCcchhHHHHHHHHHHH
Confidence 765566777777777777664
No 377
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=37.38 E-value=80 Score=27.35 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=15.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHH
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTI 411 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L 411 (464)
|..|+++|.+++ +.....|+.+|.+.
T Consensus 96 V~~LI~~L~~~d-~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDD-EELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G--TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCc-HHHHHHHHHHHHhh
Confidence 777777776543 66677777777653
No 378
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=37.25 E-value=2.6e+02 Score=28.07 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=58.8
Q ss_pred HHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCCh-hHHHHHHHHHHHHhccChhhHHH
Q 012404 346 VSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCD-RNKENCIAILHTICLSDRTKWKA 421 (464)
Q Consensus 346 v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~~A~~~L~~L~~~~~~~~~~ 421 (464)
|..+++=|... .++..++.-|+.-|.+++-+..+..+|.+..+++.+.....+ ...-.++.+++.++..... ..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~--~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN--MH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc--hh
Confidence 44555545422 567778888888888999999999999999999999643223 3333445555555554432 24
Q ss_pred HHHhhccHHHHHHHhh
Q 012404 422 MREEESTHGTISKLAQ 437 (464)
Q Consensus 422 ~~~~~g~~~~L~~Ll~ 437 (464)
+.........+.+|+.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 4444567777777765
No 379
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.18 E-value=24 Score=28.46 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=22.5
Q ss_pred cccCccchhh----ccCcccCC-CCccccHHHHHH
Q 012404 83 EFKCPLSKEL----MRDPVILA-SGQTFDRPYIQR 112 (464)
Q Consensus 83 ~f~CPi~~~~----m~dPv~~~-~g~~~~r~~I~~ 112 (464)
..+||=|+.- =+||++.| ||.+|-|+..+.
T Consensus 9 KridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 9 KRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 4578888754 46799998 899998777554
No 380
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=36.66 E-value=2.9e+02 Score=29.79 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=33.6
Q ss_pred ChHHHHHHHh----cCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC---CHHHHHHHHHHHHHhc
Q 012404 263 VIPLLMDALR----SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG---HQSAMKDVASAIFNLC 331 (464)
Q Consensus 263 ~i~~Lv~lL~----~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~al~aL~~L~ 331 (464)
+++.|...|. .++.+.+..++.+|.|+-. ...++.|...+... +..++..|+.+|..+.
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~ 552 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA 552 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHh
Confidence 4455555544 3455666777777777643 23456666666554 4556667777776653
No 381
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=35.69 E-value=49 Score=34.35 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=44.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
+..+++.+..+..++.++.|..++.+++.....+. ..+.....-..+++++-...+++-+.|..++..+.
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~-~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRR-ILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccc-cccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 44555555555569999999999999998865542 23333445556666666666666555555555443
No 382
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=35.27 E-value=1.6e+02 Score=31.79 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=70.9
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhccc----CCHHHHHHHHHHHHHhcc----
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNLCI---- 332 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~al~aL~~L~~---- 332 (464)
.++..+.+++.++.....+ ++.+|..|.... ... ...+..+..|+.. .++.+...|+.+++.|..
T Consensus 395 ~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 3556677777775433333 344455554322 111 2234556666654 356677777777776643
Q ss_pred Cc------hhhhHHHhcCcHHHHHHHHcC----C--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhcc--CCh
Q 012404 333 TH------ENKARAVRDGGVSVILKKIMD----G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES--TCD 398 (464)
Q Consensus 333 ~~------~~~~~iv~~g~v~~Lv~lL~~----~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~ 398 (464)
.. ..+...+....++.|...+.. + .-+..++.+|.|+-. ...++.|..++... .+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 21 111222333466667666652 1 334446777777642 13466666666543 246
Q ss_pred hHHHHHHHHHHHHhccChh
Q 012404 399 RNKENCIAILHTICLSDRT 417 (464)
Q Consensus 399 ~~~~~A~~~L~~L~~~~~~ 417 (464)
..+..|+++|..+....++
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~ 557 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPE 557 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HH
T ss_pred HHHHHHHHHHHHHhhcCcH
Confidence 7777888888877665553
No 383
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=34.66 E-value=2.9e+02 Score=23.58 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=51.8
Q ss_pred hhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHH
Q 012404 296 KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRA 375 (464)
Q Consensus 296 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~ 375 (464)
+........-..+..+|..+++++++.|+.+|..--.. .+.. .-..|-.++.+...+++-.... +......
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~-----~l~p--Y~d~L~~Lldd~~frdeL~~f~--~~~~~~~ 80 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKDP-----YLTP--YKDNLENLLDDKTFRDELTTFN--LSDESSV 80 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----HHHh--HHHHHHHHcCcchHHHHHHhhc--ccCCcCC
Confidence 33344455667788999999999999999999864211 1111 1245666676666776654432 3332222
Q ss_pred HHHHHhcCcHHHHHHHHh
Q 012404 376 VEEIGDLGGVSCMLRIIR 393 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~ll~ 393 (464)
.+.-.+.+.+|.++.+|-
T Consensus 81 I~~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 81 IEEEHRPELMPVVLRILY 98 (141)
T ss_pred CCHHHHhHHHHHHHHHHH
Confidence 222334455666666554
No 384
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=34.31 E-value=5e+02 Score=26.12 Aligned_cols=137 Identities=10% Similarity=-0.013 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHhccCchhhhHHHhc---CcHHHHHHHHcCC-chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHH
Q 012404 316 HQSAMKDVASAIFNLCITHENKARAVRD---GGVSVILKKIMDG-VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRI 391 (464)
Q Consensus 316 ~~~~~~~al~aL~~L~~~~~~~~~iv~~---g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~l 391 (464)
+.++...|+++|..+-.+++.-..+-+. -.+...+..+.++ ..+.-+...|+-|+...-... +.....+..++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~-~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK-IMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc-ccchhhHHHHHHH
Confidence 4577889999999888877655444322 2466677777665 344555556666665321111 2222333444433
Q ss_pred Hhc----cCChhHHHHHHHHHHHHhccChhhHHHHHHhhc-cHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 392 IRE----STCDRNKENCIAILHTICLSDRTKWKAMREEES-THGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 392 l~~----~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g-~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
+.. -.+..+...++.++.+|....|.. +..... +.+.+...+-+....++.+|..++..+..
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~---M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~ 204 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQ---MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKK 204 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 332 234667778899999999988765 444344 88888887777777788888888877753
No 385
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=34.21 E-value=5.3e+02 Score=26.43 Aligned_cols=129 Identities=12% Similarity=0.192 Sum_probs=82.3
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc---cc-------CCHHHHHHHHHHHHHhccCc
Q 012404 266 LLMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL---DE-------GHQSAMKDVASAIFNLCITH 334 (464)
Q Consensus 266 ~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~~-------~~~~~~~~al~aL~~L~~~~ 334 (464)
.+.++|..|- ...+.....++.-|+...+.-..+.....+..|+.+- .. .+..+...++.+|.|+..+.
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 3777888874 5666777888888887665544444433344444332 11 13478899999999998765
Q ss_pred -hhhhHHHhcCcHHHHHHHHcCC-------chHHHHHHHHHHhhC-CHHHHHHH-HhcCcHHHHHHHHhc
Q 012404 335 -ENKARAVRDGGVSVILKKIMDG-------VHVDELLAILAMLST-NHRAVEEI-GDLGGVSCMLRIIRE 394 (464)
Q Consensus 335 -~~~~~iv~~g~v~~Lv~lL~~~-------~~~~~a~~~L~~L~~-~~~~~~~i-~~~g~i~~Lv~ll~~ 394 (464)
..+....+...+..+.+.+... +..-.=+..|--|.. ..+.|..+ .+.+|++-+-+.+..
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 5666667776666666655321 344445555555554 35777666 566888888887764
No 386
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=34.16 E-value=22 Score=28.95 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=15.0
Q ss_pred cccCccchhhccC----cccCC-CCccccHH
Q 012404 83 EFKCPLSKELMRD----PVILA-SGQTFDRP 108 (464)
Q Consensus 83 ~f~CPi~~~~m~d----Pv~~~-~g~~~~r~ 108 (464)
-++||-|+.-|+| |++-| ||..|...
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 4678888755543 55555 55555443
No 387
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=33.39 E-value=2.6e+02 Score=22.55 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=48.4
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHH---hhcC---CHHHHHHHHHHHHHHh
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL---AQDG---TARAKRKATGILERLK 455 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~L---l~~g---~~~~k~~A~~~L~~l~ 455 (464)
++..|.+-|.+. ++..+-.|+.+|-.+..+..+.+..-+....+...++++ -..| +..+|+++..++...+
T Consensus 38 ~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 355666666655 599999999999999998876665555444455555443 1122 5579999999887653
No 388
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=33.39 E-value=33 Score=34.27 Aligned_cols=38 Identities=16% Similarity=0.361 Sum_probs=26.9
Q ss_pred cccCCCCccccH-----HHHHHHHHcC------------CCCCCCCcccccCCCC
Q 012404 96 PVILASGQTFDR-----PYIQRWLKAG------------NRTCPRTQQVLSHTIL 133 (464)
Q Consensus 96 Pv~~~~g~~~~r-----~~I~~~~~~~------------~~~~P~~~~~l~~~~l 133 (464)
|..-+|++-||| +|+-+||... .-+||.||.++...|+
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 444567777765 6789998742 2359999999876554
No 389
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=33.26 E-value=4e+02 Score=24.78 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcC-----C---------------chHHHHHHHHHHhhCCHHH
Q 012404 316 HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-----G---------------VHVDELLAILAMLSTNHRA 375 (464)
Q Consensus 316 ~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~-----~---------------~~~~~a~~~L~~L~~~~~~ 375 (464)
+..-...++..+..|...+++.......+.++.+.+.|.. + .+...=...|..|++++.|
T Consensus 77 ~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred chHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 3566777888888888888776666677888888777641 1 1223345788999999999
Q ss_pred HHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 376 VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
.+.+-+.|....+.+++...+ + ..-..-+|.+|=..... ..-..|.+.+.+|+..++-.|...|+.+-
T Consensus 157 l~lLe~~~if~~l~~i~~~~~--~-~~l~klil~~LDY~~~~---------~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSS--R-DDLLKLILSSLDYSVDG---------HPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCc--h-HHHHHHHHhhCCCCCcc---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998642 1 22222233333221111 12235677889999999999999998764
Q ss_pred c
Q 012404 456 R 456 (464)
Q Consensus 456 ~ 456 (464)
+
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 3
No 390
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=32.62 E-value=1.3e+02 Score=25.45 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=52.5
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHHHHHHhccCChh---HHHHHHHHHHHHhccC
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDR---NKENCIAILHTICLSD 415 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~---~~~~A~~~L~~L~~~~ 415 (464)
++..|.+-|..+ ..+..|+.+|..+..+ +.-+.++.+...+..|++++....... +++.+..+|...+...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 455666666654 6788899999999985 456777777788999999888654344 7888888887665543
No 391
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=32.42 E-value=41 Score=27.36 Aligned_cols=37 Identities=35% Similarity=0.449 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcc
Q 012404 186 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLS 224 (464)
Q Consensus 186 ~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~ 224 (464)
-+..+.++.+..++. .|+....+.+ .|+++.|+.+|.
T Consensus 61 ~dLd~~Ik~l~~La~-~P~LYp~lv~-l~~v~sL~~LL~ 97 (108)
T PF08216_consen 61 VDLDEEIKKLSVLAT-APELYPELVE-LGAVPSLLGLLS 97 (108)
T ss_pred HHHHHHHHHHHHccC-ChhHHHHHHH-cCCHHHHHHHHC
Confidence 344567788888888 7888888888 899999999998
No 392
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=32.27 E-value=7.4e+02 Score=27.54 Aligned_cols=234 Identities=20% Similarity=0.158 Sum_probs=119.3
Q ss_pred CCchhhhhhhcccccccC-C-CChhhHHHHHHHHHcccc--Ccc-hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 012404 213 HDAIPQLLSPLSESKCEN-G-INPNLQEDVITTLLNLSI--HDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF 287 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~-~-~~~~~~~~A~~~L~~Ls~--~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~ 287 (464)
.|.++-+++.|......+ + .++--.+-|++.+.++.. ... ....+.+. =+++.++..+++..--.+..|+..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~-fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEY-FIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHH-HHHHHhhHhhcCcccchHHHHHHHHH
Confidence 478889999995433211 1 123334556666666543 211 12222222 13455555667766678888898888
Q ss_pred HhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc-CCch-HHHHHHH
Q 012404 288 TLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM-DGVH-VDELLAI 365 (464)
Q Consensus 288 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~-~~~~-~~~a~~~ 365 (464)
.++. +-+..-.-..+.+.....+.+++..++..|+.||.-+-.+.+.-.++ .+-+.+.+-++|+ +... .+.--.+
T Consensus 486 ~~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~-sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 486 TIEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKF-SAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHH-HhhhhHHHHHHHHhcccccchHHHHH
Confidence 8843 33333333455667777787777788889999998887776543333 3333334444443 2211 1111122
Q ss_pred HHHhhC-CHH-----HHHHHHhcCcHHHHHHHHhc----c-----CChhHHHHHHHHHHHHhc-----cC-hhhHHHHHH
Q 012404 366 LAMLST-NHR-----AVEEIGDLGGVSCMLRIIRE----S-----TCDRNKENCIAILHTICL-----SD-RTKWKAMRE 424 (464)
Q Consensus 366 L~~L~~-~~~-----~~~~i~~~g~i~~Lv~ll~~----~-----~~~~~~~~A~~~L~~L~~-----~~-~~~~~~~~~ 424 (464)
+..+.. .++ +.+.+. ..+...+++.++ + ..+.-+..|.++|..+.. .+ +.-.+.+
T Consensus 563 Me~fVe~fseELspfa~eLa~--~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~l-- 638 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAG--SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYL-- 638 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHH--HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHH--
Confidence 222222 111 221111 123444444432 1 124455667777776543 12 2222222
Q ss_pred hhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 425 EESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 425 ~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
+....+.+--++.+.-...-+.|..+|.++
T Consensus 639 e~slypvi~Filkn~i~dfy~Ea~dildg~ 668 (970)
T COG5656 639 EVSLYPVISFILKNEISDFYQEALDILDGY 668 (970)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 235556666666666556666666666554
No 393
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.43 E-value=6.8e+02 Score=30.20 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=76.2
Q ss_pred chHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhc---CcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHH
Q 012404 304 ALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD---GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEE 378 (464)
Q Consensus 304 ~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~---g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~ 378 (464)
.||.|..-=-++++. ...|+.-||+--..+ ...+++. ..+.-|+.-|.+. .+++.++-+|.-|-.+++.-+.
T Consensus 999 LIPrLyRY~yDP~~~-Vq~aM~sIW~~Li~D--~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKK-VQDAMTSIWNALITD--SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred hhHHHhhhccCCcHH-HHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 344444443444554 455666777654433 1223332 4455565556555 7899999999999887443222
Q ss_pred HHhcCcHHHHHHHHhccC---ChhHHH---HHHHHHHHHhccCh-----hhHHHHHHhhccHHHHHH--HhhcCCHHHHH
Q 012404 379 IGDLGGVSCMLRIIREST---CDRNKE---NCIAILHTICLSDR-----TKWKAMREEESTHGTISK--LAQDGTARAKR 445 (464)
Q Consensus 379 i~~~g~i~~Lv~ll~~~~---~~~~~~---~A~~~L~~L~~~~~-----~~~~~~~~~~g~~~~L~~--Ll~~g~~~~k~ 445 (464)
.+. ++.+...+.+.. -+.+++ .++.+|..||.+.- ...++++ ..++|.|.. ++ +.-+++++
T Consensus 1076 -~e~--lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~v~evr~ 1149 (1702)
T KOG0915|consen 1076 -KEK--LPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SKVNEVRR 1149 (1702)
T ss_pred -HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cchHHHHH
Confidence 222 334443332211 133443 35666666655321 2223333 233333322 12 33456888
Q ss_pred HHHHHHHHHhccccc
Q 012404 446 KATGILERLKRTVNL 460 (464)
Q Consensus 446 ~A~~~L~~l~~~~~~ 460 (464)
-+...+--|.++.++
T Consensus 1150 ~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HHHHHHHHHHHhchh
Confidence 888888888877654
No 394
>PRK14707 hypothetical protein; Provisional
Probab=30.13 E-value=1.2e+03 Score=29.47 Aligned_cols=260 Identities=15% Similarity=0.116 Sum_probs=125.5
Q ss_pred HHHhhcCC--chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchH
Q 012404 177 LLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK 254 (464)
Q Consensus 177 Lv~~Ls~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~ 254 (464)
|...++.+ ...-++|+..|..-.......+..+.. --|..|+..++.- .++...+..+......++.++..+
T Consensus 126 ~~n~~sk~~~~~~c~~a~a~i~~~~~~~~~~~~~l~~--~~~~lllNafSKw----~~~~~c~~aa~~la~~~~~~d~~~ 199 (2710)
T PRK14707 126 FLNAFSKNLDSGRCERAVARLARHLRREDKARQTLNA--QNISLALNAFSKW----SDNPDCQAVAPRFAALVASDDRLR 199 (2710)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccccchhhhhcc--ccHHHHHHHhhcC----CCCchHHHHHHHHHHHhcCChhhh
Confidence 34445433 233344555554433323333333332 3566677776643 345566665555556666766555
Q ss_pred HHHhcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc-CCHHHHHHHHHHHH-Hh
Q 012404 255 KLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIF-NL 330 (464)
Q Consensus 255 ~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~-~L 330 (464)
..+-. ..|..+++-++.- ++..+..+...-..|+..+..+..+ ....+-..++.|++ ++..+...++.+|. .|
T Consensus 200 ~~~~~--q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl 276 (2710)
T PRK14707 200 SAMDA--QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERL 276 (2710)
T ss_pred cccch--HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 55533 2455566666643 5666655554444455544433333 34444555555544 44445555555554 45
Q ss_pred ccCchhhhHHHhcCcHHHHHHHHc-CC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhH-HHHHH
Q 012404 331 CITHENKARAVRDGGVSVILKKIM-DG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRN-KENCI 405 (464)
Q Consensus 331 ~~~~~~~~~iv~~g~v~~Lv~lL~-~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~-~~~A~ 405 (464)
.....-+..+ ..-.|.-.+.-|+ .+ ..+..|..+-..|...++-++.+--. .+...+.-|....+... .+.|.
T Consensus 277 ~~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~ 354 (2710)
T PRK14707 277 VDDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVS 354 (2710)
T ss_pred hhhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHH
Confidence 5444443333 3323334444443 22 34555666666777767766555332 35666676766433333 34444
Q ss_pred HHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHH
Q 012404 406 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 449 (464)
Q Consensus 406 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~ 449 (464)
.+...|+. .++.++.+- ..|+-..|-.|..=.+..+-+.|+.
T Consensus 355 ~LA~rl~~-d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~ 396 (2710)
T PRK14707 355 ALAERLVA-DPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAAS 396 (2710)
T ss_pred HHHHHhcc-CHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHH
Confidence 44444444 333333332 2344444444443333333333333
No 395
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=30.10 E-value=2.6e+02 Score=29.27 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=45.1
Q ss_pred CCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcc--------------hhhhcccCchHHHHHhccc-CCHHHHHHH
Q 012404 260 TPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSN--------------KEVIGKSGALKPLIDLLDE-GHQSAMKDV 323 (464)
Q Consensus 260 ~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~--------------~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a 323 (464)
..++++.|+.+|... +.+.+.+|+.+|..+.....+ ...+.....|..|++.+-. .......++
T Consensus 60 ~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~ 139 (475)
T PF04499_consen 60 EQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNG 139 (475)
T ss_pred HhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHH
Confidence 457999999999744 688999999888777432211 1233445566666665432 234456666
Q ss_pred HHHHHHhc
Q 012404 324 ASAIFNLC 331 (464)
Q Consensus 324 l~aL~~L~ 331 (464)
+.++..|.
T Consensus 140 v~IlieLI 147 (475)
T PF04499_consen 140 VSILIELI 147 (475)
T ss_pred HHHHHHHH
Confidence 66666554
No 396
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.84 E-value=7.6e+02 Score=26.92 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=83.7
Q ss_pred hcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc---ccCCHHHHHHHHHHHHHhccC
Q 012404 258 AETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL---DEGHQSAMKDVASAIFNLCIT 333 (464)
Q Consensus 258 ~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~al~aL~~L~~~ 333 (464)
.+...++|.|++.|-.- +.+...++...|+..+....+...+ .+.++.-| +.++.+..+..+.-+..-+..
T Consensus 355 ~En~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~l-----~e~~ly~lg~a~hp~ee~i~~l~~k~~~~Si~ 429 (896)
T KOG4337|consen 355 YENDEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEKL-----HEQLLYWLGSADHPSEETIATLLNKRCEASIS 429 (896)
T ss_pred hhhhhHHHHHHHHhccccchhhHHHHHHHHhccccccchhHHH-----HHHHHHHhhccCCCcHHHHHHHHHHHhhhhhh
Confidence 35557999999999654 6778888888898888876655444 23333333 234444333333222221111
Q ss_pred chhhhHHHhcC---cHHHHHHHHcCCchHHHHHHHHHHhhC-----C------HHHHHHHHhc---CcHHHHHHHHhccC
Q 012404 334 HENKARAVRDG---GVSVILKKIMDGVHVDELLAILAMLST-----N------HRAVEEIGDL---GGVSCMLRIIREST 396 (464)
Q Consensus 334 ~~~~~~iv~~g---~v~~Lv~lL~~~~~~~~a~~~L~~L~~-----~------~~~~~~i~~~---g~i~~Lv~ll~~~~ 396 (464)
.-+ -++.| .+..|++.++.+.+...++.-+.++-- - .....++... .+|+.|++--.++.
T Consensus 430 s~~---~~re~v~~iv~tlir~~~~~gve~~~l~e~~~~ilgglt~aek~~~s~~y~~Al~N~~lPa~i~~Lle~a~sGe 506 (896)
T KOG4337|consen 430 SLN---SCREGVETIVNTLIRDLTAGGVEVRVLEELENIILGGLTFAEKFIESEDYQKALLNVILPAAIKNLLETAVSGE 506 (896)
T ss_pred hhH---HHhhhHHHHHHHHHHHhhCCCcccHHHHHHHHHHhccchhcccccchHHHHHHHHhccChhhHHHHHHHHhccC
Confidence 111 12222 355677766665555555555555532 1 1233333322 46888888888776
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 012404 397 CDRNKENCIAILHTICLS 414 (464)
Q Consensus 397 ~~~~~~~A~~~L~~L~~~ 414 (464)
.+.....|..+|...-..
T Consensus 507 ~p~~s~~atsAl~~f~l~ 524 (896)
T KOG4337|consen 507 KPEQSMRATSALAEFFLR 524 (896)
T ss_pred CcchhHHHHHHHHhcCch
Confidence 566677777777665443
No 397
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=29.51 E-value=2.1e+02 Score=20.39 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=28.2
Q ss_pred HHHhhCCHHHHHHHHhcCcHHHHHHHHhc-cCChhHHHHHHHHHHHHh
Q 012404 366 LAMLSTNHRAVEEIGDLGGVSCMLRIIRE-STCDRNKENCIAILHTIC 412 (464)
Q Consensus 366 L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~A~~~L~~L~ 412 (464)
|..||....+|+.+.+.|+- .++.-+.. ..++.+++..-.+...|-
T Consensus 2 LllL~~T~~GR~~lR~~~vY-~IlRe~h~~E~d~~V~e~~erlV~iLi 48 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVY-PILRELHKWEEDEEVQEACERLVQILI 48 (58)
T ss_pred HhHHhccHHHHHHHHHcCch-HHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 56788899999999888754 44444443 233555555555444433
No 398
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=28.66 E-value=4.9e+02 Score=25.86 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=60.8
Q ss_pred ChHHHHHHHhcC-------CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc----------CCHHHHHHHHH
Q 012404 263 VIPLLMDALRSG-------TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE----------GHQSAMKDVAS 325 (464)
Q Consensus 263 ~i~~Lv~lL~~~-------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~al~ 325 (464)
.+|-++.++..+ +.........++..|..+.......--+-.++.++..+-. +.-..+..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 566666666443 4455666666777777665433222224467777766532 12367888999
Q ss_pred HHHHhccCchhhhHHHhcCcHHHHHHHHcCC----chHHHHHHHHHHh
Q 012404 326 AIFNLCITHENKARAVRDGGVSVILKKIMDG----VHVDELLAILAML 369 (464)
Q Consensus 326 aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L 369 (464)
.|..+|..-.....-+...+...|.+.+.++ ...--|+..|..|
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999986543333223333444666666654 2234466655555
No 399
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=28.62 E-value=6.8e+02 Score=25.98 Aligned_cols=90 Identities=8% Similarity=0.022 Sum_probs=50.3
Q ss_pred HHHHHHHcC----CchHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhcc-----CChhHHHHHHHHHHHHhccChh
Q 012404 347 SVILKKIMD----GVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRES-----TCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 347 ~~Lv~lL~~----~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
+.++..|.+ .+....+-.++.||++.+-+... +..|..+|... .+...-.-|+..|..+....++
T Consensus 216 ~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~------i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~ 289 (464)
T PF11864_consen 216 SPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSA------IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGE 289 (464)
T ss_pred HHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHH------HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcccc
Confidence 345555542 25666777788888876655433 45677777321 1234445677777777666532
Q ss_pred hHHHHHHhhc--cHHHHHHHhhcCCHH
Q 012404 418 KWKAMREEES--THGTISKLAQDGTAR 442 (464)
Q Consensus 418 ~~~~~~~~~g--~~~~L~~Ll~~g~~~ 442 (464)
+....+.-.- +++.|...++.+++.
T Consensus 290 ~~~~~l~~~~~~vl~sl~~al~~~~~~ 316 (464)
T PF11864_consen 290 QGYPSLPFSPSSVLPSLLNALKSNSPR 316 (464)
T ss_pred CCcceecccHHHHHHHHHHHHhCCCCe
Confidence 2112221222 666677767666554
No 400
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.54 E-value=3.1e+02 Score=30.91 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=47.9
Q ss_pred HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc-----ChhhHHHHHHhhccHHHHHHHhhcC
Q 012404 375 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS-----DRTKWKAMREEESTHGTISKLAQDG 439 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~-----~~~~~~~~~~~~g~~~~L~~Ll~~g 439 (464)
..+.+.+...+++++.++....++..+.+|...|..+... .|.....-+.....+..|+...-.+
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~ 251 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLED 251 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccC
Confidence 4455667788999999999877789999999999999988 5554444444566777777654333
No 401
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.38 E-value=2.2e+02 Score=32.00 Aligned_cols=88 Identities=23% Similarity=0.266 Sum_probs=52.2
Q ss_pred CChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCC-HHHHHHHHHHHHHhcccCcchhhhcc------cCc
Q 012404 232 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGK------SGA 304 (464)
Q Consensus 232 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~------~g~ 304 (464)
.|.-..-.++..|..|..+......+++.+|+ .++|.-+. .+.-.....+|+.|+.....-..+.. +.+
T Consensus 365 ~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi----~kll~vpr~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~v 440 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAHRKFAAMFVERRGI----LKLLAVPRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQV 440 (1516)
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHHhhhh----HHHhcCCCchhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHH
Confidence 35566778888899999998888899988763 34555443 33333444567777665443333222 344
Q ss_pred hHHHHHhcccCCHHHHHHH
Q 012404 305 LKPLIDLLDEGHQSAMKDV 323 (464)
Q Consensus 305 i~~Lv~lL~~~~~~~~~~a 323 (464)
+..-++||........+++
T Consensus 441 v~~~~~l~~cs~~~~~~~~ 459 (1516)
T KOG1832|consen 441 VKLAIELLDCSQDQARKNS 459 (1516)
T ss_pred HHHHHHHHhcchhhccchH
Confidence 5555566655433344443
No 402
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=28.31 E-value=5.7e+02 Score=24.99 Aligned_cols=104 Identities=10% Similarity=0.110 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhccCchhhh--------------------HH--HhcCcHHHHHHHHcCC----chH---HHHHHHHHHh
Q 012404 319 AMKDVASAIFNLCITHENKA--------------------RA--VRDGGVSVILKKIMDG----VHV---DELLAILAML 369 (464)
Q Consensus 319 ~~~~al~aL~~L~~~~~~~~--------------------~i--v~~g~v~~Lv~lL~~~----~~~---~~a~~~L~~L 369 (464)
.+..=++.+.++|..+.++. .. -+.|.+..+++.+... ..+ ..|+.+...-
T Consensus 48 lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg 127 (303)
T PF12463_consen 48 LKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRG 127 (303)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcC
Confidence 55667888888887443222 11 1236777888877643 222 3344444333
Q ss_pred hCCHHHHHHHHhcCcHHHHHHHHhccC--ChhHHHHHHHHHHHHhccChhhHHHH
Q 012404 370 STNHRAVEEIGDLGGVSCMLRIIREST--CDRNKENCIAILHTICLSDRTKWKAM 422 (464)
Q Consensus 370 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~A~~~L~~L~~~~~~~~~~~ 422 (464)
+....-+.-+.+.|.++.|+..+-++. +....+.+-.+|..|..++....+..
T Consensus 128 ~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~f~~l 182 (303)
T PF12463_consen 128 ATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDAFQRL 182 (303)
T ss_pred CCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 333344556678899999997666543 24577889999999999988654443
No 403
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.09 E-value=28 Score=34.67 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=40.5
Q ss_pred CCCcccCccchhhccCc---ccC-CCCccccHHHHHHHHHc-C-----CCCCCCCccccc-CCCCcchHHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDP---VIL-ASGQTFDRPYIQRWLKA-G-----NRTCPRTQQVLS-HTILTPNHLIREMISQW 146 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dP---v~~-~~g~~~~r~~I~~~~~~-~-----~~~~P~~~~~l~-~~~l~~n~~lk~~i~~~ 146 (464)
.-++|.||+++.+|.+- |-+ .+|..|+-.+|++-=.. . -.--||+|+.+- .. .||..-+.-+..|
T Consensus 98 s~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQ--dP~~lek~~~~~F 173 (518)
T KOG0883|consen 98 SEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQ--DPNNLEKFNMSDF 173 (518)
T ss_pred CCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeec--CcchhhccchhhH
Confidence 45689999999999874 323 47999999999864211 1 123588877642 11 2444444445554
No 404
>PLN02195 cellulose synthase A
Probab=28.08 E-value=44 Score=37.67 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=35.2
Q ss_pred cCccchh-----hccCcccCC--CCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 85 KCPLSKE-----LMRDPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 85 ~CPi~~~-----~m~dPv~~~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
.|-||++ .+-+|-+.. ||.-.||.|.+-=-.+|++.||.|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5888886 355665544 67778999997777788899999999887
No 405
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.39 E-value=33 Score=28.66 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=17.0
Q ss_pred cccCccchhhcc----CcccCC-CCccccHH
Q 012404 83 EFKCPLSKELMR----DPVILA-SGQTFDRP 108 (464)
Q Consensus 83 ~f~CPi~~~~m~----dPv~~~-~g~~~~r~ 108 (464)
.++||-|+.-|+ +|++-| ||..|...
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 467888886664 466666 66666544
No 406
>PF14353 CpXC: CpXC protein
Probab=27.30 E-value=35 Score=28.52 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=30.1
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcC--CCCCCCCccccc
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG--NRTCPRTQQVLS 129 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~--~~~~P~~~~~l~ 129 (464)
+.+||-|+..+.-.+-..=.-..+....++-+... ..+||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 46899999988776643311135666666666421 347999988643
No 407
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.27 E-value=3e+02 Score=26.96 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=81.9
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
..++.+.+..|++. .+....++..|+.|+.-+++...-... ..|-.++.-++ +....+-..|+.++..+..
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslK------NlRS~VsraA~~t~~difs 158 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLK------NLRSAVSRAACMTLADIFS 158 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhc------ChHHHHHHHHHHHHHHHHH
Confidence 44677788888654 788889999999998865544332222 25555666666 3345667777777766533
Q ss_pred CcchHHHHhcCCCChHHHHHHHhcC---CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHH
Q 012404 250 HDNNKKLVAETPMVIPLLMDALRSG---TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 326 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv~lL~~~---~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 326 (464)
.-.+...-. .-..+..+|..+ +.-+++.|-.+|..+..+-... -+++.|+..+...++.++..++..
T Consensus 159 ~ln~~i~~~----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 159 SLNNSIDQE----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred HHHHHHHHH----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhcc
Confidence 222211111 112233344333 3457788888888777543211 234556666666677777666655
Q ss_pred HHHh
Q 012404 327 IFNL 330 (464)
Q Consensus 327 L~~L 330 (464)
..+.
T Consensus 229 ~~~~ 232 (334)
T KOG2933|consen 229 FSRC 232 (334)
T ss_pred cccc
Confidence 5444
No 408
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=27.08 E-value=6.9e+02 Score=25.51 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=55.9
Q ss_pred HHHHHHhcccCcc--hhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---c
Q 012404 283 AAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---V 357 (464)
Q Consensus 283 a~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~ 357 (464)
-..|..+..+.+. .........+..|+.++.++|++-+...-..|..+-..-.+....+.......+.+.+.+. .
T Consensus 111 Y~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~ 190 (409)
T PF01603_consen 111 YEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHN 190 (409)
T ss_dssp HHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccccc
Confidence 3344444443221 3445567788999999999999999999888888766544444444444555666666532 4
Q ss_pred hHHHHHHHHHHhhC
Q 012404 358 HVDELLAILAMLST 371 (464)
Q Consensus 358 ~~~~a~~~L~~L~~ 371 (464)
.....+.+|..+-.
T Consensus 191 gI~elLeil~sii~ 204 (409)
T PF01603_consen 191 GIAELLEILGSIIN 204 (409)
T ss_dssp THHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 56666666666655
No 409
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=9.3e+02 Score=27.07 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=31.3
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcc-hhhhcccC
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSG 303 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~g 303 (464)
.+|.++..|+.++..+-.+||.++-.+-...++ ...+..++
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~ 540 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAE 540 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchh
Confidence 578899999999999999999999887665433 44454443
No 410
>PLN02189 cellulose synthase
Probab=26.22 E-value=39 Score=38.35 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=34.6
Q ss_pred ccCccchhh-----ccCcccCC--CCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 84 FKCPLSKEL-----MRDPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 84 f~CPi~~~~-----m~dPv~~~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
-.|.||++- +-+|-+.. ||.-.||.|.+.=..++++.||.|+++..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 489999865 33454432 66667999997777788899999998765
No 411
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=25.88 E-value=5.9e+02 Score=28.28 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=90.1
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc-----
Q 012404 174 FLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS----- 248 (464)
Q Consensus 174 i~~Lv~~Ls~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls----- 248 (464)
++...+.+..+...+..|-..|.++.+. +|.+-.++.++... ..++.++..|+--+.|-.
T Consensus 6 lqcf~qTldada~~rt~AE~~Lk~leKq-----------PgFv~all~i~s~d----e~~lnvklsAaIYfKNkI~rsWs 70 (970)
T COG5656 6 LQCFLQTLDADAGKRTIAEAMLKDLEKQ-----------PGFVMALLHICSKD----EGDLNVKLSAAIYFKNKIIRSWS 70 (970)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHhhcC-----------CcHHHHHHHHHhhc----cCCchhhHHHHHHHhhhhhhhhh
Confidence 3445556667777788887778887773 78999999998853 235777877777776641
Q ss_pred c-Ccc-----hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHH
Q 012404 249 I-HDN-----NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKD 322 (464)
Q Consensus 249 ~-~~~-----~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 322 (464)
. .++ .+..+-+ ..+..++.++..++...|..-...|.++-..+ .-... -|..|...++|++++....-.
T Consensus 71 s~~d~~i~~Dek~e~K~--~lienil~v~l~sp~~tr~~l~ail~~I~seD-~ps~~--wgl~p~~~nll~s~ea~~vy~ 145 (970)
T COG5656 71 SKRDDGIKADEKSEAKK--YLIENILDVFLYSPEVTRTALNAILVNIFSED-KPSDL--WGLFPKAANLLRSSEANHVYT 145 (970)
T ss_pred hcccCCCCCcccHHHHH--HHHHHHHHHHhcCCchHHHHHHHHHHHhcccc-Cchhh--cccchHHHHhhcccchhHHHH
Confidence 1 111 1222211 25666788877776555544444444443333 22111 257788889999888888888
Q ss_pred HHHHHHHhccCc
Q 012404 323 VASAIFNLCITH 334 (464)
Q Consensus 323 al~aL~~L~~~~ 334 (464)
++.++..|+...
T Consensus 146 gLlcl~elfkay 157 (970)
T COG5656 146 GLLCLEELFKAY 157 (970)
T ss_pred HHHHHHHHHHHH
Confidence 999999888643
No 412
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=25.87 E-value=18 Score=31.32 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=17.2
Q ss_pred CcccCccchhhccCcccCCC
Q 012404 82 EEFKCPLSKELMRDPVILAS 101 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~ 101 (464)
++.+||||++.-.+.|+|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999998754
No 413
>PRK05776 DNA topoisomerase I; Provisional
Probab=25.40 E-value=1.8e+02 Score=31.95 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=47.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhhhhhhh-hhhhhccC-CCCCCcccCccchhhc-cC
Q 012404 19 PTVMPKATELKKELQKLVRLIVDDVDYRTETIDQARDTLCALKELKTKKRS-LSLKLHET-VSCPEEFKCPLSKELM-RD 95 (464)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~p~~f~CPi~~~~m-~d 95 (464)
|.++.+ +++.+++.-+..|+.|..-..+++++.+..++..-+....+.. ........ ........||.|+..| .+
T Consensus 532 ~~l~~~--~~Ta~~E~~Ld~I~~G~~~~~~vl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~Cp~Cg~~l~~~ 609 (670)
T PRK05776 532 PDIVSV--ELTRDFEEKLEMIRTGKATREEVIEEAKETLNKLLEEFKKNKDEIGEELAKALGLIKPVGKCKICGREAYKD 609 (670)
T ss_pred cccCCH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCcCCCCCCccccC
Confidence 444443 7888999999999999887788888888777664322111110 00000011 1122246899999666 66
Q ss_pred cccC
Q 012404 96 PVIL 99 (464)
Q Consensus 96 Pv~~ 99 (464)
||+-
T Consensus 610 ~~~~ 613 (670)
T PRK05776 610 GLCK 613 (670)
T ss_pred ceEE
Confidence 7654
No 414
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=24.82 E-value=3.6e+02 Score=21.49 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=51.0
Q ss_pred CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 012404 383 GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILER 453 (464)
Q Consensus 383 g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~ 453 (464)
+.+..|+.-..... ...++.++..|..+..+.... .++.+-|.+..|.++-..-++..+...-.++..
T Consensus 30 ~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~~~a~--~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 30 LLLKQLLEWFNFPP-VPMKEEVLALLLRLLKSPYAA--QILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHhCCCC-CccHHHHHHHHHHHHhCcHHH--HHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 44566666665443 558899999999999877543 667678999999999877788888877777754
No 415
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.27 E-value=3.6e+02 Score=27.29 Aligned_cols=72 Identities=4% Similarity=0.117 Sum_probs=56.1
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh-cCCHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ-DGTARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~-~g~~~~k~~A~~~L~~l~~ 456 (464)
++..|.+-|.+. ++.+...|+.+|..++.+....+..-+....+...|..|+. ..-+.++++-..++...++
T Consensus 46 ~lk~i~KRln~~-dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHK-DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCC-CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 466677777655 49999999999999998877665555556788889999988 5677789988888877654
No 416
>COG1773 Rubredoxin [Energy production and conversion]
Probab=24.00 E-value=38 Score=23.89 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=12.0
Q ss_pred CCCCCcccCccchh
Q 012404 78 VSCPEEFKCPLSKE 91 (464)
Q Consensus 78 ~~~p~~f~CPi~~~ 91 (464)
.++|+++.||.|+-
T Consensus 31 edlPd~w~CP~Cg~ 44 (55)
T COG1773 31 EDLPDDWVCPECGV 44 (55)
T ss_pred hhCCCccCCCCCCC
Confidence 35999999999984
No 417
>PRK14707 hypothetical protein; Provisional
Probab=24.00 E-value=1.6e+03 Score=28.65 Aligned_cols=264 Identities=16% Similarity=0.139 Sum_probs=126.8
Q ss_pred HHHHHHhhcCC--chhHHHHHHHHH-HHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHc-ccc
Q 012404 174 FLSLLKKMSAT--LPDQTEAAKELR-LLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN-LSI 249 (464)
Q Consensus 174 i~~Lv~~Ls~~--~~~~~~a~~~L~-~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~-Ls~ 249 (464)
+..++..+|.- ...-+.++..|. .++. .+..+..+- ..+|..++..++.= .+++. ..+|+..|.. ++.
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~--~q~ia~~lNa~sKW----p~~~~-c~~aa~~la~~l~~ 236 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMD--AQGVATVLNALCKW----PDTPD-CGNAVSALAERLAD 236 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhcccc--hHHHHHHHHHHhcC----CCChh-HHHHHHHHHHHHcC
Confidence 44556666542 233344555554 4444 556665553 35677777777642 22344 4445555544 444
Q ss_pred CcchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHH-HHhcccCcchhhhcccCchHHHHHhccc-CCHHHHHHHHHH
Q 012404 250 HDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAAL-FTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASA 326 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~a 326 (464)
++.-+..+- ..+ +-..++.|..- +...-.+++.+| ..|+.....+..+ ..-.+.-.++-|++ ++..+...|+..
T Consensus 237 ~~~l~~~~~-~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~ 313 (2710)
T PRK14707 237 ESRLRNELK-PQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIA 313 (2710)
T ss_pred cHHHHHhCC-hHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHH
Confidence 433333332 223 33345555543 333333444444 3444333333333 33333444444443 444454444444
Q ss_pred H-HHhccCchhhhHHHhcCcHHHHHHHHc-CC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHH
Q 012404 327 I-FNLCITHENKARAVRDGGVSVILKKIM-DG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 401 (464)
Q Consensus 327 L-~~L~~~~~~~~~iv~~g~v~~Lv~lL~-~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 401 (464)
| ..|....+-+.. .+.-.+..++.-|+ .+ .....|..+-..|+.+++-++.+--. ++..++.-+.........
T Consensus 314 la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c 391 (2710)
T PRK14707 314 LAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVC 391 (2710)
T ss_pred HHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCchHH
Confidence 4 455555454433 33334455555554 22 44555666666777777777666433 466677777665444555
Q ss_pred HHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHH
Q 012404 402 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGIL 451 (464)
Q Consensus 402 ~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L 451 (464)
..|+..|..=....++..+.+- ..|+--.|-.|..=.+..+-..|+..|
T Consensus 392 ~~aa~~LA~~l~~d~~l~~~~~-~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 392 AAAASALAEHVVDDLELRKGLD-PQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred HHHHHHHHHHhccChhhhhhcc-hhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 5555555544444444433332 234433444444333444444444443
No 418
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.79 E-value=40 Score=32.09 Aligned_cols=41 Identities=24% Similarity=0.456 Sum_probs=29.4
Q ss_pred cccCccchhhccCcccCCC----Ccccc----HHHHHHHHHcCCCCCCC
Q 012404 83 EFKCPLSKELMRDPVILAS----GQTFD----RPYIQRWLKAGNRTCPR 123 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~----g~~~~----r~~I~~~~~~~~~~~P~ 123 (464)
-++|.+|.+-+.|.-++.| +|.|| |+.|.+....+.-.||-
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 3899999999999876643 68775 66776665554444554
No 419
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=23.58 E-value=56 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.564 Sum_probs=22.3
Q ss_pred cccCccchhhc--cCcccC-C-CCccccHHHH
Q 012404 83 EFKCPLSKELM--RDPVIL-A-SGQTFDRPYI 110 (464)
Q Consensus 83 ~f~CPi~~~~m--~dPv~~-~-~g~~~~r~~I 110 (464)
.-.||+|++.+ .|.+++ | ||-.|=|.|-
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 34699999999 677665 4 8999999883
No 420
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=23.37 E-value=5.4e+02 Score=25.60 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=58.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC-------CHHHHHHHHHHHHHhccCchhhhH
Q 012404 267 LMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-------HQSAMKDVASAIFNLCITHENKAR 339 (464)
Q Consensus 267 Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~al~aL~~L~~~~~~~~~ 339 (464)
+++.+...+...+..| |.+|..+... ...+|-++..+.+. +.......+.++..|..++.....
T Consensus 183 It~a~~~~~~~~r~~a---L~sL~tD~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le 253 (343)
T cd08050 183 ITEALVGSNEEKRREA---LQSLRTDPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLE 253 (343)
T ss_pred HHHHHhCCCHHHHHHH---HHHhccCCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchH
Confidence 3444444455555544 4455544322 22345566655432 456677788888888888876555
Q ss_pred HHhcCcHHHHHHHHcCC------------chHHHHHHHHHHhhC
Q 012404 340 AVRDGGVSVILKKIMDG------------VHVDELLAILAMLST 371 (464)
Q Consensus 340 iv~~g~v~~Lv~lL~~~------------~~~~~a~~~L~~L~~ 371 (464)
..=+-.+|.++..+... .+++.|+.+|..+|.
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 54445788888766311 568889999999885
No 421
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.30 E-value=2.8e+02 Score=21.36 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=48.1
Q ss_pred cCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHH---hhcCCHHHHHHHHHHHHH
Q 012404 382 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKL---AQDGTARAKRKATGILER 453 (464)
Q Consensus 382 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~L---l~~g~~~~k~~A~~~L~~ 453 (464)
...+.++..++.+..+..+|+..+.++..+.....+. +. .|+-..+.-+ ...+++.+.+.|-.+++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~---i~--SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN---IK--SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH---HH--hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 3456788888776667899999999999998865432 32 6776655554 455577788888777654
No 422
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=23.09 E-value=5.9e+02 Score=25.67 Aligned_cols=132 Identities=19% Similarity=0.127 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHH----------
Q 012404 186 PDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKK---------- 255 (464)
Q Consensus 186 ~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~---------- 255 (464)
.-+..|...|+.+++..++.-..+.. +.|..++.-.... ++.+...++.|+..+..++.......
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~---~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASN---PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhC---CcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 34556677778888743222111111 2333333322221 14467778888888888865543211
Q ss_pred ---HHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 256 ---LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 256 ---~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
.+... .++|-|. --.+..+-.+..|+..+......- .+..+ .++++.|+..|.+++.-+...|+.++
T Consensus 301 ~v~~Ff~~-~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQ-HVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHH-HTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHH-HhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 11111 1222221 000224556666666666554421 12222 35799999999998887877777764
No 423
>PHA02862 5L protein; Provisional
Probab=22.79 E-value=67 Score=27.47 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=29.4
Q ss_pred cCccchhhccCcccCCCCc-----cccHHHHHHHHHc-CCCCCCCCcccccC
Q 012404 85 KCPLSKELMRDPVILASGQ-----TFDRPYIQRWLKA-GNRTCPRTQQVLSH 130 (464)
Q Consensus 85 ~CPi~~~~m~dPv~~~~g~-----~~~r~~I~~~~~~-~~~~~P~~~~~l~~ 130 (464)
.|=||.+-=.+. .-||.. -.-++|+++|+.. +...||.|+.++..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 355665543333 456532 2379999999974 35689999998754
No 424
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=22.50 E-value=7.5e+02 Score=24.37 Aligned_cols=213 Identities=11% Similarity=0.127 Sum_probs=129.3
Q ss_pred hhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhh----hhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHc
Q 012404 172 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRAL----FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 246 (464)
Q Consensus 172 ~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~----i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 246 (464)
+.++.+++.+-. .-+.+..++....++-+.+-..|.. +......+..|+.- . ...+++.-..-..|..
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~----~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---Y----ENTPEIALTCGNMLRE 151 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---h----ccchHHHHHHHHHHHH
Confidence 344555555532 2344555555555554433333322 22212333333332 1 1125555555566777
Q ss_pred cccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc-c-hhhhcc-c-CchHH-HHHhcccCCHHHHH
Q 012404 247 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-N-KEVIGK-S-GALKP-LIDLLDEGHQSAMK 321 (464)
Q Consensus 247 Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~-~~~i~~-~-g~i~~-Lv~lL~~~~~~~~~ 321 (464)
...++.-.+.|..+. -....-...+.++-++-..|..+...+..... . .+.+.. . ..++. --.|+.+++--.+.
T Consensus 152 cirhe~LakiiL~s~-~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 152 CIRHEFLAKIILEST-NFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHhhHHHHHHHHcch-hHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 778877777777765 45556677788888888888888877765431 1 111211 1 12233 55677888888899
Q ss_pred HHHHHHHHhccCchhhhHHHhc----CcHHHHHHHHcCC--chHHHHHHHHHHhhCCH----HHHHHHHhcCcHHHHHHH
Q 012404 322 DVASAIFNLCITHENKARAVRD----GGVSVILKKIMDG--VHVDELLAILAMLSTNH----RAVEEIGDLGGVSCMLRI 391 (464)
Q Consensus 322 ~al~aL~~L~~~~~~~~~iv~~----g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~----~~~~~i~~~g~i~~Lv~l 391 (464)
.++.+|..+-....|...|.+. ..+..++.+|+++ ..+-.|..+.+....++ +.+..+++.. +.|+++
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~ 308 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLEL 308 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHH
Confidence 9999999998888777666542 5688899999876 78999999999888863 3555555543 556666
Q ss_pred Hhc
Q 012404 392 IRE 394 (464)
Q Consensus 392 l~~ 394 (464)
+..
T Consensus 309 l~~ 311 (342)
T KOG1566|consen 309 LHD 311 (342)
T ss_pred HHH
Confidence 554
No 425
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=22.44 E-value=27 Score=19.11 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=7.3
Q ss_pred ccCccchhhccCc
Q 012404 84 FKCPLSKELMRDP 96 (464)
Q Consensus 84 f~CPi~~~~m~dP 96 (464)
|.||+|+..+.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4566666555544
No 426
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.42 E-value=2.6e+02 Score=25.15 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=49.5
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCch
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE 335 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~ 335 (464)
.+|.+.+=|+.....-+-.|...+..|... ...+..=+-...|.+|-.-|.+.++++...++.+|..|+...+
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 566666666666555666666667666655 2223222234667777778888899999999999999966543
No 427
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=22.40 E-value=3.7e+02 Score=23.16 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhh---CCCCCHHHHHH-HHHHHHHhhhhhhhhh-hhhhhh-------ccCCCCCCcccCccchhh--
Q 012404 27 ELKKELQKLVRLIVD---DVDYRTETIDQ-ARDTLCALKELKTKKR-SLSLKL-------HETVSCPEEFKCPLSKEL-- 92 (464)
Q Consensus 27 ~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~p~~f~CPi~~~~-- 92 (464)
-++++++.|.....+ -.++...++++ .|..|..+.+...-.+ +..... ...+.-|+.|.|--|+..
T Consensus 44 ylkRDl~~~a~~~~~~~~~~~~~~~lie~slw~~L~~ItDkTqvEw~el~~d~~h~g~Y~sGE~~g~G~l~C~~Cg~~~~ 123 (146)
T PF07295_consen 44 YLKRDLEEFARYYEELREWLSPDLQLIEESLWDELSSITDKTQVEWAELAQDLEHHGVYHSGEVVGPGTLVCENCGHEVE 123 (146)
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCeecCcEecCceEecccCCCEEE
Confidence 346667777766655 24455555555 6666666654422211 111111 122346889999999865
Q ss_pred ccCcccCC
Q 012404 93 MRDPVILA 100 (464)
Q Consensus 93 m~dPv~~~ 100 (464)
+..|..||
T Consensus 124 ~~~~~~l~ 131 (146)
T PF07295_consen 124 LTHPERLP 131 (146)
T ss_pred ecCCCcCC
Confidence 46676654
No 428
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.26 E-value=1.1e+03 Score=26.15 Aligned_cols=142 Identities=18% Similarity=0.192 Sum_probs=77.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhccc-Ccc-----hhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHh-ccCchh
Q 012404 264 IPLLMDALRSGTIETRSNAAAALFTLSAL-DSN-----KEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL-CITHEN 336 (464)
Q Consensus 264 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~-----~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L-~~~~~~ 336 (464)
-|.|-.-|+..|..+|.+|+..+.++--- +++ ...+.+ .-+..|..||+++-|.++..|..-+... +..-+
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe- 253 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE- 253 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-
Confidence 35566778888999999999999987542 222 222332 2357788999988777776665433322 11111
Q ss_pred hhHHHhcCcHHHHHHHHcCC-------chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHH
Q 012404 337 KARAVRDGGVSVILKKIMDG-------VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 409 (464)
Q Consensus 337 ~~~iv~~g~v~~Lv~lL~~~-------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 409 (464)
++=...+.-|+..+.+. +++-....-|-.+..+|.....+ +. ++++|-..|+. .+.+++-.++.+|.
T Consensus 254 ---~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e~-~Lpal~~~l~D-~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 254 ---MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-EQ-LLPALRYSLHD-NSEKVRVAFVDMLL 327 (1005)
T ss_pred ---HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-HH-HHHhcchhhhc-cchhHHHHHHHHHH
Confidence 11112222233322221 33444444455555555433322 22 24455555553 45888888888887
Q ss_pred HHhc
Q 012404 410 TICL 413 (464)
Q Consensus 410 ~L~~ 413 (464)
.|-.
T Consensus 328 ~ik~ 331 (1005)
T KOG1949|consen 328 KIKA 331 (1005)
T ss_pred HHHh
Confidence 6654
No 429
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=22.12 E-value=11 Score=40.15 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=88.5
Q ss_pred HHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHH
Q 012404 240 VITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSA 319 (464)
Q Consensus 240 A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 319 (464)
...++++||++..|+..++...-....||..-...=......|..++.||+.- .-..+.....+..+.+-+.+.+..+
T Consensus 13 ~~tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqp--t~~e~S~~~~L~t~t~Gi~S~drfl 90 (847)
T KOG2312|consen 13 PPTVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQP--TSGESSLIKQLLTPTRGISSPDRFL 90 (847)
T ss_pred cceeeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCc--chhhhhHHHHHhhhccCCCCCCcee
Confidence 34567789999999998887654444444433333356777888888888871 1111111111122222233345567
Q ss_pred HHHHHHHHHHhccCchhhhHHHh---cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHhc-CcHHHHHHHH
Q 012404 320 MKDVASAIFNLCITHENKARAVR---DGGVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDL-GGVSCMLRII 392 (464)
Q Consensus 320 ~~~al~aL~~L~~~~~~~~~iv~---~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~-g~i~~Lv~ll 392 (464)
.-.++..|.+||....|-..+.+ .......+..+.-. .+.-..+..|..|+...+ ....|.+. +.|..||.+.
T Consensus 91 imr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 91 IMRALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred EeeccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 78899999999998877665544 35566666666532 455556666776665433 22233222 5566666554
No 430
>PLN03086 PRLI-interacting factor K; Provisional
Probab=21.99 E-value=1.1e+02 Score=32.76 Aligned_cols=51 Identities=10% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCCCcccCccchhhcc------------CcccCCCCccccHHHHHHHHHc----CCCCCCCCccccc
Q 012404 79 SCPEEFKCPLSKELMR------------DPVILASGQTFDRPYIQRWLKA----GNRTCPRTQQVLS 129 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~------------dPv~~~~g~~~~r~~I~~~~~~----~~~~~P~~~~~l~ 129 (464)
+.+.++.||.|+..|. -|+.-|||..+.|..+.+|... ....|+||...+.
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 3456677777766543 2444446776777777777542 1235777766553
No 431
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=21.72 E-value=71 Score=18.56 Aligned_cols=25 Identities=8% Similarity=0.140 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc
Q 012404 320 MKDVASAIFNLCITHENKARAVRDGGVSVILKKIM 354 (464)
Q Consensus 320 ~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~ 354 (464)
+..|+.+|.++.. .-++|.|++.|.
T Consensus 2 R~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 2 RRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 4455555555433 235566666553
No 432
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=21.71 E-value=1.1e+02 Score=26.64 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=32.5
Q ss_pred cccCccchhhccCcccCCCCc-----cccHHHHHHHHHc-CCCCCCCCcccccC
Q 012404 83 EFKCPLSKELMRDPVILASGQ-----TFDRPYIQRWLKA-GNRTCPRTQQVLSH 130 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~-----~~~r~~I~~~~~~-~~~~~P~~~~~l~~ 130 (464)
+..|=||.+--. +..-||.. ..=++|+++|+.. +...||.|++++..
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 456777776643 44557532 2389999999985 35689999998754
No 433
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=21.69 E-value=2.7e+02 Score=18.94 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=30.4
Q ss_pred HHHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHH
Q 012404 407 ILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERL 454 (464)
Q Consensus 407 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~-g~~~~k~~A~~~L~~l 454 (464)
+|..|...+... +.+.+.++-..+..|..+ .++.+++.|..++..=
T Consensus 2 iL~~L~~l~it~--~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 2 ILKVLEKLPITV--ELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHCSS-SH--HHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCH--HHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344455544332 566567777777778777 7889999999988753
No 434
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=21.32 E-value=61 Score=23.67 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=9.1
Q ss_pred ccHHHHHHHHHc
Q 012404 105 FDRPYIQRWLKA 116 (464)
Q Consensus 105 ~~r~~I~~~~~~ 116 (464)
|||.|+.+|+..
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 435
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=21.23 E-value=1.4e+02 Score=19.99 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=22.8
Q ss_pred hccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 426 ESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 426 ~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
.++-..|..++..|++..|..|..+|..+
T Consensus 16 e~Ar~lL~evl~~~~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 16 EGARELLEEVIEEGDEAQRQEARALLAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 35566777788889999999999988753
No 436
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=21.15 E-value=3.6e+02 Score=20.12 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 399 RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 399 ~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
...+..+.+|..|-..+... +++.+.++-..+-.|-.+.++.++..|..++..=.
T Consensus 18 ~~~~~~~~~L~~L~~~~it~--~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 18 EEVSRLLDLLRLLKKLPLTV--EILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred CCHHHHHHHHHHHhcCCCCH--HHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 34556778888887766543 56655555555666667778889999998887543
No 437
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.31 E-value=1.2e+03 Score=25.73 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh
Q 012404 356 GVHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR 416 (464)
Q Consensus 356 ~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~ 416 (464)
+..+-.++.+|+.+... +.....|.+...+..|++.|+.+.+..+-..|+.+|..|-=.-+
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 35677788888888875 67778889999999999999987767777778887776654444
No 438
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=20.10 E-value=74 Score=31.21 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=36.3
Q ss_pred CcccCccchhhccCcccCCCCccccHHHHHHH--HHcCCCCCCCCcccc
Q 012404 82 EEFKCPLSKELMRDPVILASGQTFDRPYIQRW--LKAGNRTCPRTQQVL 128 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~--~~~~~~~~P~~~~~l 128 (464)
++..|-||.+-.+---++||||.+|-.|--+. +-. ...||+|+...
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE~ 107 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-QKGCPLCRTET 107 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-ccCCCcccccc
Confidence 46889999988887889999999998887543 333 56799998764
Done!