Query 012404
Match_columns 464
No_of_seqs 367 out of 2503
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 08:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 6.5E-32 2.2E-36 268.2 21.7 271 185-459 46-337 (354)
2 3nmz_A APC variant protein; pr 100.0 9.9E-31 3.4E-35 267.3 20.8 267 188-458 165-452 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 5.1E-30 1.8E-34 264.4 24.4 278 173-459 3-363 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 2.3E-29 7.9E-34 262.9 25.5 280 171-459 47-387 (584)
5 3now_A UNC-45 protein, SD10334 100.0 1.7E-27 5.9E-32 256.6 28.2 280 169-457 418-738 (810)
6 3nmw_A APC variant protein; AR 100.0 1.5E-28 5.2E-33 244.0 17.1 250 163-420 64-341 (354)
7 1xm9_A Plakophilin 1; armadill 100.0 1.2E-27 4E-32 246.7 23.6 288 165-462 37-455 (457)
8 3nmz_A APC variant protein; pr 100.0 2E-27 6.8E-32 242.9 23.5 285 167-456 65-408 (458)
9 3l6x_A Catenin delta-1; cateni 99.9 1E-26 3.6E-31 242.8 21.7 288 163-460 81-480 (584)
10 3ul1_B Importin subunit alpha- 99.9 3.4E-26 1.2E-30 239.1 25.3 280 168-457 96-388 (510)
11 3tpo_A Importin subunit alpha- 99.9 1.5E-25 5.3E-30 235.2 27.1 280 168-457 115-407 (529)
12 3now_A UNC-45 protein, SD10334 99.9 4.2E-26 1.4E-30 245.9 21.2 280 168-457 491-783 (810)
13 3tpo_A Importin subunit alpha- 99.9 2.9E-25 9.9E-30 233.1 25.7 287 167-457 157-450 (529)
14 3ul1_B Importin subunit alpha- 99.9 2.1E-25 7.2E-30 233.1 21.9 289 165-457 136-431 (510)
15 4hxt_A De novo protein OR329; 99.9 7.9E-25 2.7E-29 206.0 23.7 239 214-461 2-246 (252)
16 4b8j_A Importin subunit alpha- 99.9 2.8E-24 9.6E-29 225.2 28.8 281 168-457 113-401 (528)
17 4hxt_A De novo protein OR329; 99.9 3.8E-24 1.3E-28 201.3 21.8 237 172-417 2-245 (252)
18 4db8_A Armadillo-repeat protei 99.9 2.4E-24 8.4E-29 203.4 19.6 235 213-456 11-251 (252)
19 4db8_A Armadillo-repeat protei 99.9 4.3E-24 1.5E-28 201.7 19.7 233 172-413 12-251 (252)
20 1wa5_B Importin alpha subunit; 99.9 3E-23 1E-27 217.6 28.0 279 169-457 127-413 (530)
21 4b8j_A Importin subunit alpha- 99.9 2.8E-23 9.5E-28 217.7 27.6 278 171-457 73-359 (528)
22 2jdq_A Importin alpha-1 subuni 99.9 3.5E-22 1.2E-26 204.2 30.0 275 172-457 64-348 (450)
23 2jdq_A Importin alpha-1 subuni 99.9 2.2E-22 7.5E-27 205.7 28.4 279 170-458 105-392 (450)
24 1wa5_B Importin alpha subunit; 99.9 1.7E-22 5.9E-27 211.9 28.1 278 171-457 86-371 (530)
25 1jdh_A Beta-catenin; beta-cate 99.9 3.4E-23 1.1E-27 216.4 21.2 276 170-457 15-296 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 4.9E-23 1.7E-27 221.2 22.8 276 170-457 12-293 (644)
27 3tt9_A Plakophilin-2; cell adh 99.9 1.3E-23 4.5E-28 195.2 13.2 193 214-414 8-230 (233)
28 2z6h_A Catenin beta-1, beta-ca 99.9 4.3E-22 1.5E-26 213.9 25.0 279 171-458 55-384 (644)
29 1jdh_A Beta-catenin; beta-cate 99.9 6.5E-22 2.2E-26 206.6 25.3 282 167-458 96-387 (529)
30 4db6_A Armadillo repeat protei 99.9 9.6E-22 3.3E-26 180.4 20.6 194 261-456 11-209 (210)
31 3tt9_A Plakophilin-2; cell adh 99.9 8.7E-23 3E-27 189.7 13.2 193 263-456 9-229 (233)
32 2z6g_A B-catenin; FULL-length, 99.9 8.3E-22 2.8E-26 215.8 22.6 276 171-458 149-430 (780)
33 2z6g_A B-catenin; FULL-length, 99.9 1.4E-21 4.8E-26 213.9 22.9 271 172-458 115-391 (780)
34 3opb_A SWI5-dependent HO expre 99.9 2.4E-21 8.2E-26 205.4 21.7 279 170-457 374-729 (778)
35 3m62_A Ubiquitin conjugation f 99.9 1E-22 3.4E-27 217.8 9.7 120 32-152 823-960 (968)
36 4db6_A Armadillo repeat protei 99.9 3.7E-21 1.3E-25 176.4 18.2 193 213-413 11-209 (210)
37 2kr4_A Ubiquitin conjugation f 99.8 1.1E-21 3.8E-26 153.1 6.5 76 75-151 6-81 (85)
38 1wgm_A Ubiquitin conjugation f 99.8 2.2E-21 7.6E-26 155.3 7.1 78 76-154 15-93 (98)
39 3opb_A SWI5-dependent HO expre 99.8 1.2E-19 4.1E-24 192.5 22.2 275 173-455 335-682 (778)
40 2kre_A Ubiquitin conjugation f 99.8 1.9E-21 6.6E-26 156.2 6.1 77 75-152 21-97 (100)
41 2f42_A STIP1 homology and U-bo 99.8 1.6E-20 5.3E-25 165.6 9.3 78 76-153 99-176 (179)
42 1xqr_A HSPBP1 protein; armadil 99.8 3.9E-19 1.3E-23 171.8 19.0 221 234-456 54-287 (296)
43 1xqr_A HSPBP1 protein; armadil 99.8 1.2E-18 4.2E-23 168.4 18.9 182 274-457 52-239 (296)
44 1t1h_A Gspef-atpub14, armadill 99.7 1.8E-18 6.1E-23 133.0 5.5 76 78-153 3-78 (78)
45 2yu4_A E3 SUMO-protein ligase 99.7 2.8E-18 9.7E-23 136.5 4.7 73 79-151 3-84 (94)
46 2c2l_A CHIP, carboxy terminus 99.7 7.9E-18 2.7E-22 161.9 8.4 78 76-153 201-278 (281)
47 2bay_A PRE-mRNA splicing facto 99.6 1.1E-16 3.6E-21 116.0 2.2 54 83-137 3-57 (61)
48 3grl_A General vesicular trans 99.6 1E-13 3.5E-18 143.7 21.3 278 171-457 20-343 (651)
49 3ztg_A E3 ubiquitin-protein li 99.5 1.8E-14 6.1E-19 114.2 8.5 78 76-153 6-86 (92)
50 3fl2_A E3 ubiquitin-protein li 99.4 1.6E-13 5.5E-18 115.0 4.7 69 80-148 49-118 (124)
51 3htk_C E3 SUMO-protein ligase 99.3 2.2E-13 7.4E-18 125.5 3.1 70 80-149 178-251 (267)
52 1z6u_A NP95-like ring finger p 99.3 4.2E-13 1.4E-17 116.0 4.7 69 80-148 75-144 (150)
53 3grl_A General vesicular trans 99.3 1E-10 3.6E-15 121.3 21.0 247 171-423 121-404 (651)
54 2y43_A E3 ubiquitin-protein li 99.3 2.1E-12 7.3E-17 103.6 5.0 70 80-150 19-89 (99)
55 3ltm_A Alpha-REP4; protein eng 99.2 3.9E-10 1.3E-14 102.8 18.8 190 213-462 18-209 (211)
56 2ckl_A Polycomb group ring fin 99.2 5.6E-12 1.9E-16 102.9 4.1 67 80-147 12-83 (108)
57 3lrq_A E3 ubiquitin-protein li 99.2 6.6E-12 2.3E-16 100.8 4.4 69 81-149 20-89 (100)
58 3hct_A TNF receptor-associated 99.2 5.5E-12 1.9E-16 104.6 4.1 69 78-146 13-81 (118)
59 2egp_A Tripartite motif-contai 99.2 5.7E-13 2E-17 102.2 -2.9 64 78-141 7-76 (79)
60 2csy_A Zinc finger protein 183 99.2 2.7E-11 9.2E-16 93.3 6.3 64 78-143 10-73 (81)
61 2ecy_A TNF receptor-associated 99.2 2E-11 6.8E-16 90.1 5.1 56 78-133 10-65 (66)
62 2ecw_A Tripartite motif-contai 99.2 3.3E-12 1.1E-16 99.3 0.6 64 78-141 14-82 (85)
63 2yur_A Retinoblastoma-binding 99.2 1.9E-11 6.3E-16 92.4 4.7 61 76-136 8-71 (74)
64 2djb_A Polycomb group ring fin 99.2 3.2E-11 1.1E-15 90.6 5.8 60 76-136 8-68 (72)
65 3l11_A E3 ubiquitin-protein li 99.2 5.3E-12 1.8E-16 104.2 1.5 69 79-147 11-86 (115)
66 1jm7_B BARD1, BRCA1-associated 99.2 9.3E-12 3.2E-16 103.0 2.7 67 81-150 20-87 (117)
67 2ckl_B Ubiquitin ligase protei 99.2 1.4E-11 4.6E-16 108.6 3.8 69 80-148 51-121 (165)
68 1oyz_A Hypothetical protein YI 99.1 2.3E-09 8E-14 102.1 19.4 195 171-412 22-220 (280)
69 2ecv_A Tripartite motif-contai 99.1 4.7E-12 1.6E-16 98.4 0.2 64 78-141 14-82 (85)
70 3ltj_A Alpharep-4; protein eng 99.1 3.5E-09 1.2E-13 95.6 18.9 184 213-456 13-198 (201)
71 3ltm_A Alpha-REP4; protein eng 99.1 3.8E-09 1.3E-13 96.2 18.6 187 171-417 18-207 (211)
72 4ayc_A E3 ubiquitin-protein li 99.1 2.5E-11 8.5E-16 103.5 3.6 62 82-146 52-113 (138)
73 1jm7_A BRCA1, breast cancer ty 99.1 2.5E-11 8.5E-16 99.6 3.3 66 82-147 20-87 (112)
74 1g25_A CDK-activating kinase a 99.1 1.1E-10 3.7E-15 85.8 4.7 55 82-136 2-61 (65)
75 3hcs_A TNF receptor-associated 99.1 6.7E-11 2.3E-15 104.6 4.1 68 78-145 13-80 (170)
76 2ysl_A Tripartite motif-contai 99.1 1.2E-10 4.1E-15 87.6 4.7 56 78-133 15-72 (73)
77 3ltj_A Alpharep-4; protein eng 99.0 1.1E-08 3.9E-13 92.2 18.5 182 171-412 13-197 (201)
78 1rmd_A RAG1; V(D)J recombinati 99.0 1.6E-10 5.4E-15 95.4 4.4 66 80-145 20-86 (116)
79 3knv_A TNF receptor-associated 99.0 5.6E-11 1.9E-15 101.4 1.6 67 79-145 27-102 (141)
80 4gmo_A Putative uncharacterize 99.0 2.3E-09 7.9E-14 115.4 12.6 191 263-455 36-257 (684)
81 3ng2_A RNF4, snurf, ring finge 99.0 2.4E-10 8.3E-15 85.4 3.4 57 79-136 6-69 (71)
82 2ysj_A Tripartite motif-contai 99.0 4.5E-10 1.6E-14 81.8 4.7 47 78-124 15-63 (63)
83 1oyz_A Hypothetical protein YI 99.0 2.1E-08 7.1E-13 95.4 17.6 196 213-455 22-220 (280)
84 4fdd_A Transportin-1; heat rep 98.9 1.7E-08 5.7E-13 111.5 18.5 273 172-457 128-430 (852)
85 2d8t_A Dactylidin, ring finger 98.9 2.4E-10 8.1E-15 85.5 1.1 52 79-131 11-62 (71)
86 2ct2_A Tripartite motif protei 98.9 1.4E-09 4.9E-14 84.8 5.6 56 76-131 8-69 (88)
87 4fdd_A Transportin-1; heat rep 98.9 1E-08 3.5E-13 113.2 14.5 270 172-457 174-472 (852)
88 2xeu_A Ring finger protein 4; 98.9 5.8E-10 2E-14 81.4 1.9 54 82-136 2-62 (64)
89 2ecj_A Tripartite motif-contai 98.8 2E-09 6.9E-14 76.9 4.5 47 78-124 10-58 (58)
90 4gmo_A Putative uncharacterize 98.8 7.3E-09 2.5E-13 111.5 10.3 191 215-413 35-258 (684)
91 2ea6_A Ring finger protein 4; 98.8 2E-09 6.8E-14 79.8 3.7 52 78-130 10-68 (69)
92 1e4u_A Transcriptional repress 98.8 5.2E-09 1.8E-13 79.4 5.1 55 79-133 7-65 (78)
93 2ect_A Ring finger protein 126 98.7 5.4E-09 1.8E-13 79.6 3.5 57 79-136 11-70 (78)
94 1ibr_B P95, importin beta-1 su 98.7 1.6E-07 5.4E-12 95.3 15.2 273 172-458 128-439 (462)
95 2vgl_B AP-2 complex subunit be 98.6 5.7E-07 2E-11 95.1 16.8 255 173-457 50-312 (591)
96 4ap4_A E3 ubiquitin ligase RNF 98.6 1E-08 3.6E-13 86.3 2.5 55 81-136 5-66 (133)
97 1chc_A Equine herpes virus-1 r 98.6 1.8E-08 6.3E-13 74.3 3.3 48 82-130 4-52 (68)
98 1b3u_A Protein (protein phosph 98.6 6.3E-07 2.1E-11 93.8 16.2 248 185-456 338-587 (588)
99 2ecm_A Ring finger and CHY zin 98.6 2.4E-08 8.3E-13 70.3 3.2 47 82-129 4-54 (55)
100 2kiz_A E3 ubiquitin-protein li 98.6 4.8E-08 1.6E-12 72.3 5.0 53 78-131 9-64 (69)
101 1b3u_A Protein (protein phosph 98.6 2E-06 6.7E-11 90.0 19.1 260 174-455 89-352 (588)
102 2ecn_A Ring finger protein 141 98.6 1E-08 3.5E-13 76.2 0.9 53 78-132 10-62 (70)
103 2ep4_A Ring finger protein 24; 98.6 5.7E-08 2E-12 73.0 5.1 52 78-130 10-64 (74)
104 1bor_A Transcription factor PM 98.6 1.1E-08 3.9E-13 72.4 0.9 47 81-131 4-50 (56)
105 2vgl_B AP-2 complex subunit be 98.5 2E-06 6.8E-11 90.9 17.3 262 173-455 122-418 (591)
106 2l0b_A E3 ubiquitin-protein li 98.5 5E-08 1.7E-12 76.5 3.7 51 79-130 36-89 (91)
107 1iym_A EL5; ring-H2 finger, ub 98.5 4.9E-08 1.7E-12 68.7 2.7 48 81-129 3-54 (55)
108 1x4j_A Ring finger protein 38; 98.5 6E-08 2.1E-12 73.1 2.8 51 80-131 20-73 (75)
109 1v87_A Deltex protein 2; ring- 98.5 1.3E-07 4.4E-12 77.5 5.0 53 78-130 20-94 (114)
110 4ic3_A E3 ubiquitin-protein li 98.4 3.8E-08 1.3E-12 74.0 0.9 44 82-130 23-67 (74)
111 1w63_A Adapter-related protein 98.4 1.6E-05 5.3E-10 84.5 21.4 253 174-457 72-380 (618)
112 2y1n_A E3 ubiquitin-protein li 98.4 1.1E-07 3.6E-12 93.4 3.2 50 83-132 332-381 (389)
113 2bpt_A Importin beta-1 subunit 98.3 5.9E-06 2E-10 90.6 15.6 258 184-457 382-669 (861)
114 2ecg_A Baculoviral IAP repeat- 98.3 2.6E-07 8.8E-12 69.6 2.5 44 82-130 24-68 (75)
115 4ap4_A E3 ubiquitin ligase RNF 98.3 1.9E-07 6.5E-12 78.5 1.5 56 80-136 69-131 (133)
116 1u6g_C TIP120 protein, CAND1; 98.2 4.2E-06 1.4E-10 95.9 12.4 270 172-457 6-285 (1230)
117 1w63_A Adapter-related protein 98.2 0.00024 8.3E-09 75.3 24.4 247 174-456 144-414 (618)
118 1qgr_A Protein (importin beta 98.2 3E-05 1E-09 85.1 17.7 268 173-457 173-480 (876)
119 1qgr_A Protein (importin beta 98.2 2.8E-05 9.7E-10 85.3 17.2 273 173-458 129-439 (876)
120 2vje_A E3 ubiquitin-protein li 98.2 8.2E-07 2.8E-11 64.5 2.9 48 81-129 6-56 (64)
121 2qk2_A LP04448P; mini spindles 98.2 3.4E-05 1.2E-09 71.5 14.8 184 265-458 18-207 (242)
122 2bpt_A Importin beta-1 subunit 98.1 4.6E-05 1.6E-09 83.4 17.3 268 174-457 413-712 (861)
123 1wim_A KIAA0161 protein; ring 98.1 6E-07 2E-11 70.7 1.5 50 82-131 4-67 (94)
124 2ecl_A Ring-box protein 2; RNF 98.1 7.9E-07 2.7E-11 67.9 1.9 49 82-131 14-77 (81)
125 2vje_B MDM4 protein; proto-onc 98.1 1.2E-06 3.9E-11 63.5 2.6 46 83-129 7-55 (63)
126 1ibr_B P95, importin beta-1 su 98.1 5.3E-05 1.8E-09 76.5 14.9 263 177-457 95-396 (462)
127 2yho_A E3 ubiquitin-protein li 98.0 1.2E-06 4.2E-11 66.5 0.3 44 82-130 17-61 (79)
128 3dpl_R Ring-box protein 1; ubi 97.9 6.8E-06 2.3E-10 66.0 3.7 46 83-129 37-100 (106)
129 2qk1_A Protein STU2; STU2P, XM 97.9 8.5E-05 2.9E-09 69.4 11.5 192 267-460 21-224 (249)
130 3t6p_A Baculoviral IAP repeat- 97.9 1.8E-06 6.2E-11 84.2 -0.1 45 81-130 293-338 (345)
131 3b2a_A TON_1937, putative unch 97.9 8.9E-05 3E-09 67.0 10.7 184 262-458 33-220 (265)
132 1te4_A Conserved protein MTH18 97.8 4.8E-06 1.6E-10 69.6 1.7 118 213-368 11-130 (131)
133 1u6g_C TIP120 protein, CAND1; 97.8 0.00015 5.3E-09 82.9 14.6 227 171-417 47-288 (1230)
134 2qk2_A LP04448P; mini spindles 97.8 0.00012 4.1E-09 67.7 11.2 179 177-371 20-205 (242)
135 2vgl_A Adaptor protein complex 97.8 0.0014 4.9E-08 69.3 20.8 140 174-334 76-218 (621)
136 2ea5_A Cell growth regulator w 97.8 1.4E-05 4.7E-10 58.7 3.1 46 80-130 12-58 (68)
137 3b2a_A TON_1937, putative unch 97.7 0.0008 2.7E-08 60.8 14.9 184 171-373 32-220 (265)
138 3dad_A FH1/FH2 domain-containi 97.6 0.0021 7.1E-08 61.6 16.7 180 267-446 123-326 (339)
139 4a0k_B E3 ubiquitin-protein li 97.6 1.1E-05 3.8E-10 65.7 0.3 51 77-129 43-111 (117)
140 3dad_A FH1/FH2 domain-containi 97.6 0.0026 8.8E-08 60.9 16.6 146 308-454 123-284 (339)
141 1ho8_A Vacuolar ATP synthase s 97.5 0.0018 6.2E-08 65.0 15.9 219 234-454 182-474 (480)
142 2qk1_A Protein STU2; STU2P, XM 97.5 0.00058 2E-08 63.6 10.8 186 178-371 22-220 (249)
143 2d8s_A Cellular modulator of i 97.4 8.3E-05 2.8E-09 56.3 3.5 52 80-131 12-71 (80)
144 2iw3_A Elongation factor 3A; a 97.4 0.011 3.7E-07 65.1 21.5 263 172-457 54-325 (986)
145 1te4_A Conserved protein MTH18 97.4 0.00031 1.1E-08 58.4 7.3 118 173-330 13-131 (131)
146 2vgl_A Adaptor protein complex 97.3 0.0097 3.3E-07 62.9 19.5 249 174-455 148-432 (621)
147 4ady_A RPN2, 26S proteasome re 97.2 0.01 3.4E-07 64.8 18.1 198 215-455 473-675 (963)
148 1ho8_A Vacuolar ATP synthase s 97.2 0.069 2.3E-06 53.7 22.0 233 213-455 76-349 (480)
149 3tjz_B Coatomer subunit gamma; 96.9 0.019 6.6E-07 56.0 14.7 242 174-455 70-315 (355)
150 2db0_A 253AA long hypothetical 96.8 0.23 7.8E-06 43.3 19.1 213 170-414 30-247 (253)
151 2iw3_A Elongation factor 3A; a 96.6 0.043 1.5E-06 60.4 16.2 257 173-458 15-282 (986)
152 4ady_A RPN2, 26S proteasome re 96.5 0.19 6.5E-06 54.9 20.4 200 215-451 508-714 (963)
153 3tjz_B Coatomer subunit gamma; 96.4 0.19 6.3E-06 49.0 18.3 206 215-456 69-279 (355)
154 2db0_A 253AA long hypothetical 95.8 0.48 1.7E-05 41.3 15.5 65 263-332 33-99 (253)
155 2ct0_A Non-SMC element 1 homol 95.8 0.008 2.7E-07 44.4 3.9 47 84-130 16-64 (74)
156 3vk6_A E3 ubiquitin-protein li 95.7 0.0073 2.5E-07 46.7 3.3 45 85-129 3-48 (101)
157 1wa5_C Importin alpha RE-expor 95.6 0.15 5.2E-06 56.5 15.2 218 233-456 418-670 (960)
158 1vyx_A ORF K3, K3RING; zinc-bi 95.6 0.013 4.4E-07 41.4 4.2 48 82-129 5-58 (60)
159 2fv2_A RCD1 required for cell 95.0 0.73 2.5E-05 42.2 14.9 208 173-382 4-235 (268)
160 2fv2_A RCD1 required for cell 94.7 0.5 1.7E-05 43.3 13.0 139 316-454 14-172 (268)
161 3ebb_A Phospholipase A2-activa 94.3 0.87 3E-05 43.2 14.3 140 308-453 152-303 (304)
162 3k1l_B Fancl; UBC, ring, RWD, 94.2 0.007 2.4E-07 57.8 -0.5 48 83-130 308-373 (381)
163 3i2d_A E3 SUMO-protein ligase 94.0 0.04 1.4E-06 53.3 4.4 62 83-144 249-314 (371)
164 2x19_B Importin-13; nuclear tr 93.8 1.6 5.3E-05 48.2 17.4 174 272-454 459-644 (963)
165 3ebb_A Phospholipase A2-activa 93.6 0.7 2.4E-05 43.9 12.2 173 235-408 117-301 (304)
166 4ffb_C Protein STU2; tubulin f 93.5 1.6 5.5E-05 40.5 14.6 186 264-458 12-214 (278)
167 4ffb_C Protein STU2; tubulin f 93.5 0.72 2.5E-05 42.9 12.1 185 177-372 14-213 (278)
168 3oc3_A Helicase MOT1, MOT1; re 93.4 0.71 2.4E-05 47.2 12.0 245 174-452 176-432 (800)
169 4fo9_A E3 SUMO-protein ligase 92.6 0.092 3.2E-06 50.6 4.4 63 82-144 214-280 (360)
170 2x1g_F Cadmus; transport prote 92.4 3.7 0.00013 45.3 17.8 172 274-455 476-662 (971)
171 1wa5_C Importin alpha RE-expor 92.2 3.3 0.00011 45.7 17.0 172 236-414 377-583 (960)
172 2jun_A Midline-1; B-BOX, TRIM, 91.9 0.062 2.1E-06 42.1 1.9 33 82-114 2-37 (101)
173 2kkx_A Uncharacterized protein 91.7 0.11 3.7E-06 39.9 2.8 58 76-134 19-83 (102)
174 3eg5_B Protein diaphanous homo 91.6 1.5 5E-05 43.1 11.9 144 302-445 108-283 (383)
175 2f31_A Diaphanous protein homo 91.3 3.2 0.00011 37.6 13.0 82 213-294 42-128 (233)
176 2f31_A Diaphanous protein homo 91.1 1.7 5.8E-05 39.4 11.0 148 302-449 42-221 (233)
177 3u0r_A Apoptosis inhibitor 5; 90.3 1.8 6.1E-05 43.4 10.8 101 174-293 31-131 (507)
178 2of3_A ZYG-9; multifunctional 89.5 1.6 5.5E-05 40.5 9.4 171 182-371 57-236 (266)
179 3eg5_B Protein diaphanous homo 88.6 7.1 0.00024 38.2 13.9 142 213-355 108-275 (383)
180 2x19_B Importin-13; nuclear tr 88.1 12 0.00042 40.9 17.1 212 231-456 460-714 (963)
181 2bnx_A Diaphanous protein homo 87.3 5.2 0.00018 39.2 12.1 130 317-446 72-222 (386)
182 2bnx_A Diaphanous protein homo 87.1 9.3 0.00032 37.3 13.7 141 213-354 46-212 (386)
183 2x1g_F Cadmus; transport prote 87.0 8.4 0.00029 42.4 15.0 211 232-457 476-723 (971)
184 3oc3_A Helicase MOT1, MOT1; re 83.9 1.9 6.5E-05 44.2 6.8 158 185-370 242-403 (800)
185 2kre_A Ubiquitin conjugation f 83.6 0.47 1.6E-05 37.0 1.9 33 83-117 63-95 (100)
186 1upk_A MO25 protein; transfera 83.3 32 0.0011 32.7 16.9 196 262-458 78-285 (341)
187 3u0r_A Apoptosis inhibitor 5; 82.8 28 0.00095 34.9 14.6 119 272-410 38-160 (507)
188 2of3_A ZYG-9; multifunctional 81.8 25 0.00087 32.3 13.3 176 264-456 48-236 (266)
189 3m1i_C Exportin-1; heat repeat 80.8 10 0.00036 42.2 12.4 216 173-414 17-264 (1049)
190 4hat_C Exportin-1; heat repeat 78.7 28 0.00094 38.7 14.7 140 274-416 465-621 (1023)
191 1wgm_A Ubiquitin conjugation f 78.0 0.84 2.9E-05 35.4 1.6 33 83-117 57-89 (98)
192 3ldz_A STAM-1, signal transduc 77.6 8.2 0.00028 31.8 7.8 70 385-455 44-113 (140)
193 3c2g_A SYS-1 protein; beta-cat 76.7 38 0.0013 32.5 12.7 108 286-394 266-378 (619)
194 3ibv_A Exportin-T; karyopherin 76.6 62 0.0021 35.7 16.7 213 233-457 456-731 (980)
195 1lrv_A LRV, leucine-rich repea 76.3 2.7 9.3E-05 38.4 4.8 82 202-325 63-144 (244)
196 3c2g_A SYS-1 protein; beta-cat 76.0 25 0.00084 33.8 11.2 124 244-369 266-401 (619)
197 2kr4_A Ubiquitin conjugation f 75.9 0.92 3.2E-05 34.1 1.3 32 83-116 48-79 (85)
198 1x5b_A Signal transducing adap 74.1 13 0.00043 31.6 8.2 72 384-456 53-125 (163)
199 1upk_A MO25 protein; transfera 73.9 62 0.0021 30.7 15.4 156 298-454 73-236 (341)
200 3nw0_A Non-structural maintena 72.5 2.7 9.4E-05 38.2 3.8 49 83-131 180-230 (238)
201 3m1i_C Exportin-1; heat repeat 71.9 38 0.0013 37.6 13.8 162 234-415 30-226 (1049)
202 3mjh_B Early endosome antigen 71.3 0.62 2.1E-05 28.4 -0.6 17 83-99 5-21 (34)
203 1juq_A ADP-ribosylation factor 70.0 16 0.00055 31.2 8.0 71 385-456 52-128 (171)
204 1mhq_A ADP-ribosylation factor 69.9 15 0.0005 30.6 7.5 72 384-456 39-116 (148)
205 3g2s_A C-terminal fragment of 69.5 18 0.00062 30.1 8.0 72 384-456 49-126 (149)
206 1lsh_A Lipovitellin (LV-1N, LV 67.9 1.2E+02 0.0042 33.6 16.7 126 266-417 444-580 (1056)
207 3qml_C Protein SLS1, nucleotid 67.7 81 0.0028 29.5 13.6 147 304-456 23-189 (315)
208 4hat_C Exportin-1; heat repeat 67.6 23 0.00078 39.4 10.6 99 316-416 466-572 (1023)
209 3gjx_A Exportin-1; transport, 67.3 44 0.0015 37.2 12.8 216 171-415 27-277 (1073)
210 2jvx_A NF-kappa-B essential mo 66.1 1.7 5.7E-05 25.2 0.5 18 81-98 1-18 (28)
211 1t1h_A Gspef-atpub14, armadill 65.6 3.4 0.00012 30.0 2.4 33 83-117 43-75 (78)
212 3zyq_A Hepatocyte growth facto 63.1 18 0.0006 32.5 7.1 71 385-456 47-118 (226)
213 1dvp_A HRS, hepatocyte growth 59.8 28 0.00096 30.9 7.9 71 385-456 44-115 (220)
214 3gjx_A Exportin-1; transport, 58.6 1.6E+02 0.0055 32.7 15.2 203 233-455 41-274 (1073)
215 1lsh_A Lipovitellin (LV-1N, LV 57.8 48 0.0017 36.9 11.0 134 263-416 357-510 (1056)
216 2f42_A STIP1 homology and U-bo 57.5 3.6 0.00012 35.6 1.4 31 85-117 143-173 (179)
217 3a6p_A Exportin-5; exportin-5, 57.3 1.7E+02 0.0057 33.0 15.5 123 185-333 27-163 (1204)
218 6rxn_A Rubredoxin; electron tr 55.4 3.5 0.00012 27.0 0.7 13 79-91 26-38 (46)
219 1elk_A Target of MYB1; superhe 55.0 43 0.0015 28.0 7.8 73 384-456 54-130 (157)
220 3pst_A Protein DOA1; protein d 54.8 18 0.00063 35.6 6.1 99 233-334 275-391 (425)
221 3pwf_A Rubrerythrin; non heme 54.6 21 0.00071 30.4 5.8 17 78-94 133-149 (170)
222 3gae_A Protein DOA1; UFD3, CDC 51.7 12 0.00041 34.2 4.0 99 233-335 103-220 (253)
223 2yu4_A E3 SUMO-protein ligase 51.0 6.5 0.00022 29.8 1.8 33 83-117 48-83 (94)
224 3l9t_A Putative uncharacterize 51.0 1.1E+02 0.0037 27.5 10.0 143 263-424 72-218 (240)
225 3gs3_A Symplekin, LD45768P; he 50.9 28 0.00097 31.8 6.4 86 236-329 31-116 (257)
226 4rxn_A Rubredoxin; electron tr 50.5 4.7 0.00016 27.4 0.7 14 79-92 32-45 (54)
227 3l3f_X Protein DOA1, DOA1/UFD3 49.6 17 0.00058 35.1 4.8 99 233-334 212-328 (362)
228 1e8j_A Rubredoxin; iron-sulfur 49.6 5.7 0.00019 26.7 1.1 13 79-91 32-44 (52)
229 3l9t_A Putative uncharacterize 49.1 86 0.003 28.2 9.1 130 308-459 76-210 (240)
230 3ldz_A STAM-1, signal transduc 47.6 28 0.00096 28.5 5.3 70 263-332 43-114 (140)
231 3a6p_A Exportin-5; exportin-5, 47.5 3.5E+02 0.012 30.4 18.6 177 185-372 61-277 (1204)
232 2c2l_A CHIP, carboxy terminus 45.1 7.3 0.00025 35.8 1.5 32 84-117 244-275 (281)
233 3ibv_A Exportin-T; karyopherin 44.4 1.3E+02 0.0044 33.2 11.5 144 233-381 103-273 (980)
234 1yk4_A Rubredoxin, RD; electro 44.3 6.6 0.00023 26.4 0.7 13 79-91 31-43 (52)
235 2v3b_B Rubredoxin 2, rubredoxi 43.8 6.7 0.00023 26.7 0.7 14 79-92 32-45 (55)
236 2kn9_A Rubredoxin; metalloprot 43.7 7.6 0.00026 28.7 1.0 14 79-92 56-69 (81)
237 1dx8_A Rubredoxin; electron tr 40.6 8.1 0.00028 27.7 0.7 14 79-92 36-49 (70)
238 1x5b_A Signal transducing adap 38.8 47 0.0016 27.9 5.5 70 263-332 53-125 (163)
239 1mhq_A ADP-ribosylation factor 37.7 54 0.0019 27.1 5.6 70 263-332 39-116 (148)
240 3zyq_A Hepatocyte growth facto 36.7 55 0.0019 29.1 5.9 70 345-414 46-119 (226)
241 1s24_A Rubredoxin 2; electron 36.5 10 0.00036 28.4 0.8 14 79-92 64-77 (87)
242 3g2s_A C-terminal fragment of 35.2 67 0.0023 26.6 5.8 70 263-332 49-126 (149)
243 1juq_A ADP-ribosylation factor 33.9 67 0.0023 27.2 5.7 70 263-332 51-128 (171)
244 1lrv_A LRV, leucine-rich repea 33.3 22 0.00074 32.3 2.6 12 231-242 157-168 (244)
245 3gae_A Protein DOA1; UFD3, CDC 32.1 2.2E+02 0.0077 25.5 9.3 100 314-416 101-220 (253)
246 4dvg_B Diaphanous protein; cyt 30.6 2.6E+02 0.0089 24.1 11.1 153 306-462 69-256 (353)
247 1weo_A Cellulose synthase, cat 30.3 49 0.0017 24.7 3.5 47 83-129 16-69 (93)
248 1dvp_A HRS, hepatocyte growth 29.9 81 0.0028 27.8 5.8 69 345-413 43-115 (220)
249 1m3v_A FLIN4, fusion of the LI 29.6 16 0.00055 29.0 0.9 52 81-133 30-84 (122)
250 3o2t_A Symplekin; heat repeat, 28.7 93 0.0032 30.2 6.3 158 262-423 63-266 (386)
251 3rru_A TOM1L1 protein; structu 27.7 91 0.0031 25.8 5.3 73 384-456 54-130 (152)
252 2ko5_A Ring finger protein Z; 27.5 14 0.00047 28.0 0.2 46 83-131 28-74 (99)
253 1elk_A Target of MYB1; superhe 27.4 1.1E+02 0.0039 25.3 6.0 75 171-249 52-130 (157)
254 3m62_A Ubiquitin conjugation f 25.8 20 0.0007 39.0 1.2 31 84-116 927-957 (968)
255 3qml_C Protein SLS1, nucleotid 25.7 4.1E+02 0.014 24.8 11.4 134 187-331 44-188 (315)
256 1lko_A Rubrerythrin all-iron(I 22.5 65 0.0022 27.8 3.6 12 83-94 155-166 (191)
257 1vdy_A Hypothetical protein (R 22.5 1.6E+02 0.0056 23.9 5.8 72 385-459 51-133 (140)
258 3vhs_A ATPase wrnip1; zinc fin 20.8 23 0.00079 19.6 0.2 12 84-95 7-18 (29)
259 1yuz_A Nigerythrin; rubrythrin 20.5 1.6E+02 0.0054 25.6 5.7 16 79-94 167-182 (202)
260 2xjy_A Rhombotin-2; oncoprotei 20.4 49 0.0017 26.2 2.2 49 81-130 27-78 (131)
261 2eo2_A Adult MALE hypothalamus 20.2 35 0.0012 24.2 1.0 24 10-38 38-61 (71)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=6.5e-32 Score=268.18 Aligned_cols=271 Identities=18% Similarity=0.180 Sum_probs=235.6
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhccccc-----ccCCCChhhHHHHHHHHHccccCcc-hHHHHh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK-----CENGINPNLQEDVITTLLNLSIHDN-NKKLVA 258 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~ 258 (464)
...+..|+++|.+++. ++++|..|.+ .|+++.|+.+|.... .....++.++++|+++|.||+.+++ ++..+.
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456689999999999 5899999999 999999999996310 0001246789999999999998876 777776
Q ss_pred cCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc--CcchhhhcccCchHHHHHhc-ccCCHHHHHHHHHHHHHhcc-Cc
Q 012404 259 ETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCI-TH 334 (464)
Q Consensus 259 ~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~-~~ 334 (464)
..+|++|.|+.+|++++++++..|+++|.+|+.. ++++..+++.|+|+.|+++| +++++++++.|+.+|+||+. ++
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 6667899999999999999999999999999985 46889999999999999975 55688999999999999999 66
Q ss_pred hhhhHHH-hcCcHHHHHHHHcCC------chHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHHHHHhccCChhHHHH
Q 012404 335 ENKARAV-RDGGVSVILKKIMDG------VHVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 403 (464)
Q Consensus 335 ~~~~~iv-~~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 403 (464)
+++..++ ..|++|.|+++|.++ .+++.|+++|.||+. +++++..+.++|+++.|+.+|+++ +..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 8898888 689999999999854 278999999999995 789999999999999999999976 4899999
Q ss_pred HHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcccc
Q 012404 404 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 404 A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~ 459 (464)
|+++|++|+..+++..+.++ +.|++++|++|++++++++++.|+++|++|.....
T Consensus 283 A~~aL~nLa~~~~~~~~~i~-~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALW-DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHH-HTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999987776655565 58999999999999999999999999999987644
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=9.9e-31 Score=267.30 Aligned_cols=267 Identities=18% Similarity=0.189 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhccccc-----ccCCCChhhHHHHHHHHHccccCcc-hHHHHhcCC
Q 012404 188 QTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESK-----CENGINPNLQEDVITTLLNLSIHDN-NKKLVAETP 261 (464)
Q Consensus 188 ~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~ 261 (464)
+.+|+++|.+++. ++++|..|.+ .|+++.|+.+|.... .....++.++++|+++|.||+.+++ ++..+...+
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 242 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHH-CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC
Confidence 3489999999988 6999999999 999999999995210 0001246789999999999999886 666665566
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhccc--CcchhhhcccCchHHHHHhc-ccCCHHHHHHHHHHHHHhcc-Cchhh
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSAL--DSNKEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCI-THENK 337 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~-~~~~~ 337 (464)
|++|.|+.+|++++++++..|+++|.+|+.. ++++..|++.|+|+.|+++| +.+++.+++.|+.+|+||+. +++++
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 7899999999999999999999999999985 46889999999999999975 55688999999999999999 67899
Q ss_pred hHHH-hcCcHHHHHHHHcCC--c----hHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHH
Q 012404 338 ARAV-RDGGVSVILKKIMDG--V----HVDELLAILAMLST----NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIA 406 (464)
Q Consensus 338 ~~iv-~~g~v~~Lv~lL~~~--~----~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~ 406 (464)
..++ ..|++|.|+++|.++ . +++.|+++|.||+. +++++..+.++|+++.|+.+|++++ ..++++|++
T Consensus 323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~ 401 (458)
T 3nmz_A 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACG 401 (458)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHH
Confidence 9998 789999999999854 2 78999999999995 7899999999999999999999764 899999999
Q ss_pred HHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 407 ILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 407 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
+|++|+..+++....++ +.|++++|+.|++++++.+++.|+++|+||...+
T Consensus 402 aL~nLa~~~~~~~~~i~-~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 402 TLWNLSARNPKDQEALW-DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHSSCHHHHHHHH-HHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999987777655565 5899999999999999999999999999998765
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=5.1e-30 Score=264.38 Aligned_cols=278 Identities=19% Similarity=0.193 Sum_probs=239.4
Q ss_pred hHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC-
Q 012404 173 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH- 250 (464)
Q Consensus 173 ~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~- 250 (464)
.++.++..|++ +...|..|+..|++++..++.++..+.+ .|+|+.|+.+|+ +.++++++.|+++|.||+.+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~------s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLR------SPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTT------SSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCC
Confidence 47889999965 4788999999999999877788888888 899999999999 55789999999999999987
Q ss_pred cchHHHHhcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcc--------cC------
Q 012404 251 DNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD--------EG------ 315 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--------~~------ 315 (464)
++++..+++. |++|.|+++|+ ++++++++.++++|++|+..++++..+++ |+++.|+.+|. ++
T Consensus 76 ~~~k~~i~~~-G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 76 TTNKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHHHc-CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 7799999887 58999999999 88999999999999999999899999999 99999999993 22
Q ss_pred --CHHHHHHHHHHHHHhccCchhhhHHHhc-CcHHHHHHHHcC--------CchHHHHHHHHHHhhCCH-----------
Q 012404 316 --HQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNH----------- 373 (464)
Q Consensus 316 --~~~~~~~al~aL~~L~~~~~~~~~iv~~-g~v~~Lv~lL~~--------~~~~~~a~~~L~~L~~~~----------- 373 (464)
++.+.+.|+++|+|||..++++..+++. |++|.|+.+|.+ ...++.|+.+|.+|+...
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 3566779999999999998899999998 999999999974 268899999999998421
Q ss_pred ----------------------------------------HHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 374 ----------------------------------------RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 374 ----------------------------------------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
++.+.+.+.|+++.|+.+|+++.++..++.|+++|++|+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 1223455667899999999987679999999999999998
Q ss_pred cChhh---H-HHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcccc
Q 012404 414 SDRTK---W-KAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 414 ~~~~~---~-~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~ 459 (464)
.+... . +.++.+.|+++.|++|++++++++++.|+++|+|++...+
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 65432 2 3456568999999999999999999999999999987654
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=2.3e-29 Score=262.89 Aligned_cols=280 Identities=19% Similarity=0.212 Sum_probs=237.6
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
.+.++.||+.|.++ ...|.+|+..|.+++..++.+|..+.+ .|+|+.|+.+|+ +.++++++.|+++|.||+.
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~------s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLD------HPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGG------CSSHHHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHC------CCCHHHHHHHHHHHHHHHc
Confidence 35689999999654 678899999999999888999999999 999999999999 5678999999999999998
Q ss_pred C--cchHHHHhcCCCChHHHHHHHhc-CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcc-------------
Q 012404 250 H--DNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLD------------- 313 (464)
Q Consensus 250 ~--~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~------------- 313 (464)
+ ++++..|++. |++|.|+.+|++ ++.+++++++++|++|+..++++..|++ |+++.|+.+|.
T Consensus 120 ~~~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 120 GRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp SSCHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred cCCHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 5 6799999987 589999999998 4789999999999999999999999985 67999999872
Q ss_pred -----cCCHHHHHHHHHHHHHhccCch-hhhHHHhc-CcHHHHHHHHcC--------CchHHHHHHHHHHhhCCHH----
Q 012404 314 -----EGHQSAMKDVASAIFNLCITHE-NKARAVRD-GGVSVILKKIMD--------GVHVDELLAILAMLSTNHR---- 374 (464)
Q Consensus 314 -----~~~~~~~~~al~aL~~L~~~~~-~~~~iv~~-g~v~~Lv~lL~~--------~~~~~~a~~~L~~L~~~~~---- 374 (464)
..++.++++|+++|.||+...+ +|..+++. |+++.|+.+|.+ ...++.|+++|.||+..-+
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence 1257899999999999999875 58888886 668899999963 2578999999999997621
Q ss_pred ----------------------HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh---hhHHHHHHhhccH
Q 012404 375 ----------------------AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR---TKWKAMREEESTH 429 (464)
Q Consensus 375 ----------------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~---~~~~~~~~~~g~~ 429 (464)
+.+.+.+.++++.|+.+|+.+.++.++++|+++|++||.... ...+.++.+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~gl 357 (584)
T 3l6x_A 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKAL 357 (584)
T ss_dssp TCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHH
T ss_pred chhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcH
Confidence 122233445677889999876569999999999999998652 2334466678999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcccc
Q 012404 430 GTISKLAQDGTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 430 ~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~ 459 (464)
+.|++|+.++++.+++.|.++|+||+....
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999999998654
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=1.7e-27 Score=256.65 Aligned_cols=280 Identities=13% Similarity=0.122 Sum_probs=243.4
Q ss_pred hhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCc-----------------------------hhh---hhhhhcCCc
Q 012404 169 ADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMP-----------------------------SFR---ALFGESHDA 215 (464)
Q Consensus 169 ~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~-----------------------------~~r---~~i~~~~g~ 215 (464)
.+.+.++.|++.|++. ...+..|++.|.|++...+ .++ +.+.+ .|+
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve-aGa 496 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN-EGI 496 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH-TTH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH-CcC
Confidence 3568999999999754 6789999999999998442 122 56778 899
Q ss_pred hhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcc
Q 012404 216 IPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN 295 (464)
Q Consensus 216 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~ 295 (464)
++.|+.+|+ +.++.++++|+++|.|++.+++++..++.. |++|.|+.+|+++++..++.|+++|.+|+.+.+.
T Consensus 497 Vp~LV~LL~------s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~-Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 497 TTALCALAK------TESHNSQELIARVLNAVCGLKELRGKVVQE-GGVKALLRMALEGTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHHHHHHT------CCCHHHHHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence 999999999 557899999999999999888899999987 5899999999999999999999999999986554
Q ss_pred hhhhcc---cCchHHHHHhcccC-CHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHH
Q 012404 296 KEVIGK---SGALKPLIDLLDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 368 (464)
Q Consensus 296 ~~~i~~---~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~ 368 (464)
...+.. .|++++|+.+|..+ +...+..|+++|.||+..+ +++..+++.|++|.|+.+|.++ .++..|+++|+|
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 443322 57999999999865 4455678999999999875 7889999999999999999865 789999999999
Q ss_pred hhCCHHHHHHHHh-cCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHH
Q 012404 369 LSTNHRAVEEIGD-LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA 447 (464)
Q Consensus 369 L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A 447 (464)
|+.+++.+..+.+ .|+++.|+.++.+. +..+++.|+++|.+|+..++...+.++...|++++|+.|+.+++..+|+.|
T Consensus 650 La~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A 728 (810)
T 3now_A 650 LVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728 (810)
T ss_dssp HTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHH
Confidence 9999999988885 68999999999975 489999999999999998777777888547999999999999999999999
Q ss_pred HHHHHHHhcc
Q 012404 448 TGILERLKRT 457 (464)
Q Consensus 448 ~~~L~~l~~~ 457 (464)
.++|.|+...
T Consensus 729 ~~aL~NL~~~ 738 (810)
T 3now_A 729 IVIILNMINA 738 (810)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999999764
No 6
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.5e-28 Score=243.95 Aligned_cols=250 Identities=21% Similarity=0.217 Sum_probs=217.2
Q ss_pred ccccchhhhhhHHHHHHhhcC------------CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccC
Q 012404 163 EEGITEADRDHFLSLLKKMSA------------TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCEN 230 (464)
Q Consensus 163 ~~~~~~~~~~~i~~Lv~~Ls~------------~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~ 230 (464)
+++..+.+.|+++.|+..|.+ +...|.+|++.|.+++..++.+|..+....|+||.|+.+|+
T Consensus 64 e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~------ 137 (354)
T 3nmw_A 64 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK------ 137 (354)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG------
T ss_pred HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC------
Confidence 455567788999999999842 24578999999999999777788888652567999999999
Q ss_pred CCChhhHHHHHHHHHccccC--cchHHHHhcCCCChHHHHHHH-hcCCHHHHHHHHHHHHHhcc-cCcchhhhc-ccCch
Q 012404 231 GINPNLQEDVITTLLNLSIH--DNNKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSA-LDSNKEVIG-KSGAL 305 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~-~~g~i 305 (464)
+.++++++.|+++|.||+.+ ++++..+.+. |++|.|+++| ++++.+.++.++.+|++|+. .++++..++ ..|++
T Consensus 138 s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai 216 (354)
T 3nmw_A 138 SESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 216 (354)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcH
Confidence 55789999999999999985 4578888876 5899999975 66789999999999999998 567888888 78999
Q ss_pred HHHHHhcccCCH----HHHHHHHHHHHHhcc----CchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHH
Q 012404 306 KPLIDLLDEGHQ----SAMKDVASAIFNLCI----THENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHR 374 (464)
Q Consensus 306 ~~Lv~lL~~~~~----~~~~~al~aL~~L~~----~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~ 374 (464)
+.|+.+|..+++ ++++.|+++|+||+. .++++..+++.|++|.|+++|.++ .+++.|+++|+||+. +++
T Consensus 217 ~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 296 (354)
T 3nmw_A 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 296 (354)
T ss_dssp HHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH
Confidence 999999987644 589999999999996 678899999999999999999876 679999999999995 689
Q ss_pred HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHH
Q 012404 375 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWK 420 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~ 420 (464)
++..+.+.|+++.|++++++++ +.+++.|+++|.+|+.+.+.+++
T Consensus 297 ~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 297 DQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999999999999999999764 89999999999999999887644
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=1.2e-27 Score=246.71 Aligned_cols=288 Identities=18% Similarity=0.188 Sum_probs=239.3
Q ss_pred ccchhhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHH
Q 012404 165 GITEADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITT 243 (464)
Q Consensus 165 ~~~~~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~ 243 (464)
+......|+++.|++.|+++ ...|..|+++|++++..++++|..|.+ .|+|+.|+.+|+. +.++++++.|+++
T Consensus 37 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~-~G~i~~Lv~lL~~-----~~~~~~~~~a~~a 110 (457)
T 1xm9_A 37 KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR-QNGIREAVSLLRR-----TGNAEIQKQLTGL 110 (457)
T ss_dssp HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHHHTT-----CCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhh-----CCCHHHHHHHHHH
Confidence 33456789999999999754 678999999999999977999999999 8999999999983 2368999999999
Q ss_pred HHccccCcchHHHHhcCCCChHHHHHHHh--------cC--------CHHHHHHHHHHHHHhcccCcchhhhccc-CchH
Q 012404 244 LLNLSIHDNNKKLVAETPMVIPLLMDALR--------SG--------TIETRSNAAAALFTLSALDSNKEVIGKS-GALK 306 (464)
Q Consensus 244 L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~--------~~--------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~ 306 (464)
|.||+.+++++..++. |++|.|+.+|. ++ +..++.+|+++|+||+..++++..+.+. |+++
T Consensus 111 L~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~ 188 (457)
T 1xm9_A 111 LWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLID 188 (457)
T ss_dssp HHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHH
T ss_pred HHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHH
Confidence 9999999889998887 58999999993 22 3456669999999999988888899987 9999
Q ss_pred HHHHhcccC-----------------------------------------------------------------------
Q 012404 307 PLIDLLDEG----------------------------------------------------------------------- 315 (464)
Q Consensus 307 ~Lv~lL~~~----------------------------------------------------------------------- 315 (464)
.|+.+|.++
T Consensus 189 ~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
T 1xm9_A 189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268 (457)
T ss_dssp HHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCC
T ss_pred HHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccc
Confidence 999888630
Q ss_pred ----------------------------CHHHHHHHHHHHHHhccCchh------hhHHHhcCcHHHHHHHHcCC--chH
Q 012404 316 ----------------------------HQSAMKDVASAIFNLCITHEN------KARAVRDGGVSVILKKIMDG--VHV 359 (464)
Q Consensus 316 ----------------------------~~~~~~~al~aL~~L~~~~~~------~~~iv~~g~v~~Lv~lL~~~--~~~ 359 (464)
++.+++.|+++|.||+..... +..+.+.|++|.|+++|.++ .++
T Consensus 269 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~ 348 (457)
T 1xm9_A 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVV 348 (457)
T ss_dssp CCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHH
T ss_pred cccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHH
Confidence 245566788999999875422 22233689999999999976 789
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCC-----hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHH
Q 012404 360 DELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTC-----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISK 434 (464)
Q Consensus 360 ~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ 434 (464)
..|+++|.||+.+++++..+. .|+++.|+++|..+++ +.+...++++|.++...+++..+.+ .+.|+++.|+.
T Consensus 349 ~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i-~~~g~l~~L~~ 426 (457)
T 1xm9_A 349 RSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQY-FSSSMLNNIIN 426 (457)
T ss_dssp HHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHH-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHH-HHcCCHHHHHH
Confidence 999999999999988887665 4789999999997532 3577799999999998887654444 47899999999
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhccccccC
Q 012404 435 LAQDG-TARAKRKATGILERLKRTVNLTH 462 (464)
Q Consensus 435 Ll~~g-~~~~k~~A~~~L~~l~~~~~~~~ 462 (464)
|+.++ +++++++|.++|.++..+..++.
T Consensus 427 L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 427 LCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 99999 99999999999999988777654
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=242.90 Aligned_cols=285 Identities=16% Similarity=0.186 Sum_probs=233.3
Q ss_pred chhhhhhHHHHHHhhcCC-------------chhHHHHHHHHHHHhhcCchhhhhhhhcCCch----------hhhhhhc
Q 012404 167 TEADRDHFLSLLKKMSAT-------------LPDQTEAAKELRLLTKRMPSFRALFGESHDAI----------PQLLSPL 223 (464)
Q Consensus 167 ~~~~~~~i~~Lv~~Ls~~-------------~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i----------~~Lv~lL 223 (464)
.....|.+|.|++.|..+ .+.+.+|+++|.+++...++......+ .|++ +.++.++
T Consensus 65 ~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 143 (458)
T 3nmz_A 65 SMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRRE-IRVLHLLEQIRAYCETCWEWQ 143 (458)
T ss_dssp HHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHH-HHHHHHHHHhhhhhHHHHHHH
Confidence 346789999999999642 477899999999999988776666555 5666 5566666
Q ss_pred ccccccCCCC---hhhHH-------HHHHHHHccccCcchHHHHhcCCCChHHHHHHHhc-----------CCHHHHHHH
Q 012404 224 SESKCENGIN---PNLQE-------DVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-----------GTIETRSNA 282 (464)
Q Consensus 224 ~~~~~~~~~~---~~~~~-------~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~-----------~~~~~~~~a 282 (464)
..... +.+ ..+.+ +|+++|.|++.++++|..+.+. |+++.|+.+|.. .++..+.+|
T Consensus 144 ~~~~~--~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~A 220 (458)
T 3nmz_A 144 EAHEP--GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYA 220 (458)
T ss_dssp TTTSS--SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred Hhhcc--ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHhhhhcccccccCCCCHHHHHHH
Confidence 64320 001 01333 8999999999999999999987 589999999952 246789999
Q ss_pred HHHHHHhcccCc-chhhhc-ccCchHHHHHhcccCCHHHHHHHHHHHHHhccC--chhhhHHHhcCcHHHHHHHHcC-C-
Q 012404 283 AAALFTLSALDS-NKEVIG-KSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT--HENKARAVRDGGVSVILKKIMD-G- 356 (464)
Q Consensus 283 a~~L~~Ls~~~~-~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~--~~~~~~iv~~g~v~~Lv~lL~~-~- 356 (464)
+++|.+|+..++ ++..+. ..|+|+.|+.+|.++++++++.|+++|+||+.. +++|..+++.|+||.|+++|.. +
T Consensus 221 a~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~ 300 (458)
T 3nmz_A 221 GMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300 (458)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC
Confidence 999999998765 666665 457799999999999999999999999999985 4688999999999999998653 3
Q ss_pred -chHHHHHHHHHHhhC-CHHHHHHHH-hcCcHHHHHHHHhccCCh---hHHHHHHHHHHHHhc---cChhhHHHHHHhhc
Q 012404 357 -VHVDELLAILAMLST-NHRAVEEIG-DLGGVSCMLRIIRESTCD---RNKENCIAILHTICL---SDRTKWKAMREEES 427 (464)
Q Consensus 357 -~~~~~a~~~L~~L~~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~---~~~~~A~~~L~~L~~---~~~~~~~~~~~~~g 427 (464)
.+++.|+.+|+||+. +++++..+. ..|+++.|+.+|..+.+. .+++.|+++|++|+. .+++..+.++ +.|
T Consensus 301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G 379 (458)
T 3nmz_A 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENN 379 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-Hcc
Confidence 678899999999999 788898887 789999999999975422 489999999999997 5666544444 689
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 428 THGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 428 ~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
+++.|+.++.+++..+++.|+++|.|++.
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999984
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=1e-26 Score=242.84 Aligned_cols=288 Identities=17% Similarity=0.192 Sum_probs=232.0
Q ss_pred ccccchhhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhc-CchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHH
Q 012404 163 EEGITEADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDV 240 (464)
Q Consensus 163 ~~~~~~~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~-~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A 240 (464)
.++..+.+.|+|+.||+.|++. ...|+.|+.+|++++.. ++.+|..|.+ .|+|+.|+.+|+++ .+.+++++|
T Consensus 81 ~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~-~GaIp~LV~LL~s~-----~~~~~~e~a 154 (584)
T 3l6x_A 81 KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN-CDGVPALVRLLRKA-----RDMDLTEVI 154 (584)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH-TTHHHHHHHHHHHC-----CSHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-cCCHHHHHHHHcCC-----CCHHHHHHH
Confidence 3455567789999999999754 78899999999999984 6899999999 99999999999952 357899999
Q ss_pred HHHHHccccCcchHHHHhcCCCChHHHHHHHh------------------cCCHHHHHHHHHHHHHhcccCc-chhhhcc
Q 012404 241 ITTLLNLSIHDNNKKLVAETPMVIPLLMDALR------------------SGTIETRSNAAAALFTLSALDS-NKEVIGK 301 (464)
Q Consensus 241 ~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~------------------~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~ 301 (464)
+.+|.|||.+++++..|+. + ++|.|+++|. ..+..++++|+++|+||+..++ ++..+++
T Consensus 155 a~aL~nLS~~~~~k~~I~~-~-alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~ 232 (584)
T 3l6x_A 155 TGTLWNLSSHDSIKMEIVD-H-ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE 232 (584)
T ss_dssp HHHHHHHTTSGGGHHHHHH-H-THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHhCCchhhHHHHh-c-cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999995 3 5999999872 1247899999999999998763 4666665
Q ss_pred c-CchHHHHHhccc------------------------------------------------------------------
Q 012404 302 S-GALKPLIDLLDE------------------------------------------------------------------ 314 (464)
Q Consensus 302 ~-g~i~~Lv~lL~~------------------------------------------------------------------ 314 (464)
. |+++.||.+|+.
T Consensus 233 ~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~ 312 (584)
T 3l6x_A 233 CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRI 312 (584)
T ss_dssp STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHH
T ss_pred cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHH
Confidence 3 455566665532
Q ss_pred --------CCHHHHHHHHHHHHHhccCc-----hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHH
Q 012404 315 --------GHQSAMKDVASAIFNLCITH-----ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEI 379 (464)
Q Consensus 315 --------~~~~~~~~al~aL~~L~~~~-----~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i 379 (464)
.++.++++|+++|.|||... .++..+.+.|++|.|+++|.++ .+++.|+++|.||+.++.++..|
T Consensus 313 Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I 392 (584)
T 3l6x_A 313 YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI 392 (584)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH
Confidence 23455666777777776543 2233334568999999999875 78899999999999998888766
Q ss_pred HhcCcHHHHHHHHhccC-------ChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--CHHHHHHHHHH
Q 012404 380 GDLGGVSCMLRIIREST-------CDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARAKRKATGI 450 (464)
Q Consensus 380 ~~~g~i~~Lv~ll~~~~-------~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g--~~~~k~~A~~~ 450 (464)
..|+++.||.+|.++. ++.+...|+++|.||+..+++..+.++ +.|+++.|+.|+.++ .+.+++.|+++
T Consensus 393 -~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~-~~g~I~~Lv~LL~s~~~~~~v~k~Aa~v 470 (584)
T 3l6x_A 393 -GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR-ETQGIEKLVLINKSGNRSEKEVRAAALV 470 (584)
T ss_dssp -HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHTCSSSCHHHHHHHHHH
T ss_pred -HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHhCCCCChHHHHHHHHH
Confidence 6789999999998752 357788999999999998888766666 589999999999987 88999999999
Q ss_pred HHHHhccccc
Q 012404 451 LERLKRTVNL 460 (464)
Q Consensus 451 L~~l~~~~~~ 460 (464)
|.+|..+..+
T Consensus 471 L~nl~~~~el 480 (584)
T 3l6x_A 471 LQTIWGYKEL 480 (584)
T ss_dssp HHHHHTSHHH
T ss_pred HHHHHcCHHH
Confidence 9999765543
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=3.4e-26 Score=239.06 Aligned_cols=280 Identities=15% Similarity=0.140 Sum_probs=241.6
Q ss_pred hhhhhhHHHHHHhhcCC--chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHH
Q 012404 168 EADRDHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 245 (464)
Q Consensus 168 ~~~~~~i~~Lv~~Ls~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 245 (464)
..+.|.||.|++.|+++ ...|.+|+++|.+++..+++++..+.+ .|+||.|+.+|+ +.++++++.|+++|.
T Consensus 96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~-~GaIp~Lv~lL~------s~~~~v~e~A~~aL~ 168 (510)
T 3ul1_B 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA------SPHAHISEQAVWALG 168 (510)
T ss_dssp HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 45678999999999643 678999999999999988899999999 999999999999 567899999999999
Q ss_pred ccccCcc-hHHHHhcCCCChHHHHHHHhcCC-----HHHHHHHHHHHHHhcccCcchhhhc-ccCchHHHHHhcccCCHH
Q 012404 246 NLSIHDN-NKKLVAETPMVIPLLMDALRSGT-----IETRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDEGHQS 318 (464)
Q Consensus 246 ~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~ 318 (464)
|++.+.+ .+..+... |+++.|+.+|...+ ...+..++++|.+++........+. ..|+++.|+.+|.+++++
T Consensus 169 nLa~d~~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~ 247 (510)
T 3ul1_B 169 NIAGDGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247 (510)
T ss_dssp HHHTTCHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHhCCHHHHHHHHHc-CChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHH
Confidence 9998765 56666666 58999999997654 4578899999999998765555443 468999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhh-HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhc
Q 012404 319 AMKDVASAIFNLCITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE 394 (464)
Q Consensus 319 ~~~~al~aL~~L~~~~~~~~-~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~ 394 (464)
++..|+++|.+|+....++. .+++.|++|.|+++|.++ .++..|+.+|.|++.. ++.+..+.+.|+++.|+.++.+
T Consensus 248 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 327 (510)
T 3ul1_B 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327 (510)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence 99999999999998876554 456789999999999876 6788999999999886 5677888999999999999987
Q ss_pred cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 395 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 395 ~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+ ++.+++.|+++|.+|+..++.....++ +.|+++.|+.++.+++..+|+.|+++|.|+...
T Consensus 328 ~-~~~v~~~A~~aL~nl~a~~~~~~~~v~-~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 328 P-KTNIQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp S-SHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHcCcHHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 6 489999999999999998887655566 589999999999999999999999999999753
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=1.5e-25 Score=235.18 Aligned_cols=280 Identities=14% Similarity=0.133 Sum_probs=242.4
Q ss_pred hhhhhhHHHHHHhhcC--CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHH
Q 012404 168 EADRDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 245 (464)
Q Consensus 168 ~~~~~~i~~Lv~~Ls~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 245 (464)
....|.++.|++.|+. +...|.+|+++|.+++..++..+..+.+ .|+|+.|+.+|. +.++++++.|+++|.
T Consensus 115 ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~-~Gaip~Lv~LL~------s~~~~v~e~A~~aL~ 187 (529)
T 3tpo_A 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA------SPHAHISEQAVWALG 187 (529)
T ss_dssp HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 3567899999999953 3678999999999999988888888999 899999999999 667899999999999
Q ss_pred ccccCc-chHHHHhcCCCChHHHHHHHhcCC-----HHHHHHHHHHHHHhcccCcchhhh-cccCchHHHHHhcccCCHH
Q 012404 246 NLSIHD-NNKKLVAETPMVIPLLMDALRSGT-----IETRSNAAAALFTLSALDSNKEVI-GKSGALKPLIDLLDEGHQS 318 (464)
Q Consensus 246 ~Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~ 318 (464)
|++.+. .++..+... |+++.|+.+|..++ ...+..++++|.+++.+......+ ...|+++.|+.+|.+++++
T Consensus 188 nLa~~~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~ 266 (529)
T 3tpo_A 188 NIAGAGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 266 (529)
T ss_dssp HHHTTCHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHhccCHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHH
Confidence 999876 467777776 58999999997653 457889999999999876555444 3468999999999999999
Q ss_pred HHHHHHHHHHHhccCchhh-hHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhc
Q 012404 319 AMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE 394 (464)
Q Consensus 319 ~~~~al~aL~~L~~~~~~~-~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~ 394 (464)
++..|+++|.+|+....++ ..+++.|++|.|+++|.++ .++..|+.+|.||+.+ ++.+..+.+.|+++.|+.++.+
T Consensus 267 v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 346 (529)
T 3tpo_A 267 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 346 (529)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC
Confidence 9999999999999887654 4556889999999999876 6788999999999886 5678888999999999999997
Q ss_pred cCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 395 STCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 395 ~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+ ++.+++.|+++|.+|+.+++.....++ +.|+++.|+.++.+++..+++.|+++|.|+...
T Consensus 347 ~-~~~i~~~a~~aL~nl~~~~~~~~~~v~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 347 P-KTNIQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp S-SHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHhcccHHHHHHHH-hcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 6 489999999999999998887655566 589999999999999999999999999999753
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=4.2e-26 Score=245.87 Aligned_cols=280 Identities=18% Similarity=0.136 Sum_probs=240.6
Q ss_pred hhhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHc
Q 012404 168 EADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 246 (464)
Q Consensus 168 ~~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 246 (464)
..+.|.++.|+..++++ ...|++|+++|.+++. ++.+|..+.+ .|+++.|+.+|++ .++..++.|+++|.+
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~-~Gaip~Lv~LL~s------~~~~~k~~Aa~AL~n 562 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQ-EGGVKALLRMALE------GTEKGKRHATQALAR 562 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHH-TTHHHHHHHHHHS------SCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHH-CCCHHHHHHHHcc------CCHHHHHHHHHHHHH
Confidence 34568999999999754 7889999999999997 6789999999 9999999999984 467899999999999
Q ss_pred cccCcchHHHHhc--CCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHH
Q 012404 247 LSIHDNNKKLVAE--TPMVIPLLMDALRSG-TIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKD 322 (464)
Q Consensus 247 Ls~~~~~~~~i~~--~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 322 (464)
|+.+.+....+.. ..+++|.|+.+|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.+|.++++.+++.
T Consensus 563 L~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~ 642 (810)
T 3now_A 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRA 642 (810)
T ss_dssp HHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHH
T ss_pred HhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHH
Confidence 9876544332211 114799999999876 4566678999999999874 77889999999999999999999999999
Q ss_pred HHHHHHHhccCchhhhHHHh-cCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHh-cCcHHHHHHHHhccCC
Q 012404 323 VASAIFNLCITHENKARAVR-DGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGD-LGGVSCMLRIIRESTC 397 (464)
Q Consensus 323 al~aL~~L~~~~~~~~~iv~-~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~-~g~i~~Lv~ll~~~~~ 397 (464)
|+++|.||+.+++.+..++. .|+++.|+.++.++ .++..|+++|++|+. +++..+.+++ .|+++.|+.+++++ +
T Consensus 643 A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d 721 (810)
T 3now_A 643 AAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-S 721 (810)
T ss_dssp HHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-S
T ss_pred HHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-C
Confidence 99999999999998888885 69999999999865 788999999999999 6888888888 89999999999976 4
Q ss_pred hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC---CHHHHHHHHHHHHHHhcc
Q 012404 398 DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG---TARAKRKATGILERLKRT 457 (464)
Q Consensus 398 ~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g---~~~~k~~A~~~L~~l~~~ 457 (464)
..++..|+++|.|++..+++..+.++ +.|++++|..|++.. +.++.+.|..+|+++-+.
T Consensus 722 ~~vq~~A~~aL~NL~~~s~e~~~~l~-e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 722 PAVQHRGIVIILNMINAGEEIAKKLF-ETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH-TSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHH-HCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 99999999999999987766554555 689999999998654 678999999999998653
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=2.9e-25 Score=233.10 Aligned_cols=287 Identities=14% Similarity=0.163 Sum_probs=244.3
Q ss_pred chhhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHH
Q 012404 167 TEADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 245 (464)
Q Consensus 167 ~~~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 245 (464)
...+.|+++.|+..|.++ ...++.|+++|.+++.+++.+|..+.+ .|+++.|+.+|..... .......+..++++|.
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK-HGAIDPLLALLAVPDL-STLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHTTCSSCG-GGSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-cCCcHHHHHHHhccch-hHhHHHHHHHHHHHHH
Confidence 456678999999999654 788999999999999988999999999 9999999999985321 0113456789999999
Q ss_pred ccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc-chhhhcccCchHHHHHhcccCCHHHHHHHH
Q 012404 246 NLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-NKEVIGKSGALKPLIDLLDEGHQSAMKDVA 324 (464)
Q Consensus 246 ~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al 324 (464)
+++.+......+....+++|.|+.+|.+++++++..++++|.+|+...+ ....+...|+++.|+.+|.++++.++..|+
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 9998876544333333589999999999999999999999999998764 455677899999999999999999999999
Q ss_pred HHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhH
Q 012404 325 SAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN 400 (464)
Q Consensus 325 ~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 400 (464)
.+|.||+... +.+..+++.|+++.|+.+|.++ .++..|+++|.||+.+ ++.+..+.+.|+++.|+.++.++. ..+
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v 393 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKT 393 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHH
Confidence 9999998765 5677788999999999999876 6889999999999986 667788899999999999999764 899
Q ss_pred HHHHHHHHHHHhccC-hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 401 KENCIAILHTICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 401 ~~~A~~~L~~L~~~~-~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+..|+++|.+++... ++....++ +.|++++|+.|+...++.+...+.++|.++.+.
T Consensus 394 ~~~A~~aL~nl~~~~~~~~~~~l~-~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 394 QKAAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-HCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999864 44444455 689999999999999999999999999998654
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.93 E-value=2.1e-25 Score=233.06 Aligned_cols=289 Identities=13% Similarity=0.163 Sum_probs=244.0
Q ss_pred ccchhhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHH
Q 012404 165 GITEADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITT 243 (464)
Q Consensus 165 ~~~~~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~ 243 (464)
+....+.|+++.|++.|+++ ...++.|+++|.+++.+++.+|..+.+ .|+++.|+.+|..... .......+..++++
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~-~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDL-STLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCG-GGSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccc-hhhhHHHHHHHHHH
Confidence 33456788999999999754 788999999999999988999999999 8999999999985321 01134567899999
Q ss_pred HHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcc-hhhhcccCchHHHHHhcccCCHHHHHH
Q 012404 244 LLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDEGHQSAMKD 322 (464)
Q Consensus 244 L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 322 (464)
|.+++.+......+....+++|.|+.+|.+++.+++..++++|.+|+...++ ...+...|+++.|+.+|.+++..++..
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 9999988765443333335899999999999999999999999999987644 456778999999999999999999999
Q ss_pred HHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCCh
Q 012404 323 VASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCD 398 (464)
Q Consensus 323 al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~ 398 (464)
++++|.||+... ..+..+++.|+++.|+.+|.++ .++..|+++|.||+.+ ++.+..+.+.|+++.|+.++++++ .
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~ 372 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-F 372 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-H
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-H
Confidence 999999998766 5667778999999999999876 6889999999999985 667888899999999999999764 9
Q ss_pred hHHHHHHHHHHHHhccCh-hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 399 RNKENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 399 ~~~~~A~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
.++..|+++|.|++.... +....++ +.|++++|..|+...++.+...+.++|.++-+.
T Consensus 373 ~v~~~Aa~aL~Nl~~~~~~~~~~~L~-~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 373 KTQKEAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHH-HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999998654 4444455 689999999999999999999999999998654
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=7.9e-25 Score=206.00 Aligned_cols=239 Identities=21% Similarity=0.291 Sum_probs=214.8
Q ss_pred CchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 214 DAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 214 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
|.++.|+.+|+ +.+++++..|+.+|.+++.++. ++..+... |+++.|+.+|++++.+++..++++|.+|+..
T Consensus 2 ~~i~~L~~~L~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLT------STDSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 67899999998 5568999999999999988775 77788876 5899999999999999999999999999997
Q ss_pred -CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhc-cCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHH
Q 012404 293 -DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC-ITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 368 (464)
Q Consensus 293 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~-~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~ 368 (464)
++++..+.+.|+++.|+.+|.++++.++..|+++|.+|+ ..++++..+++.|+++.|+++|.++ .++..|+++|.+
T Consensus 75 ~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 75 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 688889999999999999999999999999999999999 4567888899999999999999875 688999999999
Q ss_pred hhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHH
Q 012404 369 LSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKA 447 (464)
Q Consensus 369 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A 447 (464)
|+.. ++.+..+.+.|+++.|+.++.++ ++.++..|+++|.+|+..++...+.+. +.|+++.|+++++++++.+++.|
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a 232 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKEA 232 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHCCCcHHHHHHH
Confidence 9985 56668889999999999999965 489999999999999997776655555 58999999999999999999999
Q ss_pred HHHHHHHhcccccc
Q 012404 448 TGILERLKRTVNLT 461 (464)
Q Consensus 448 ~~~L~~l~~~~~~~ 461 (464)
.++|.++.......
T Consensus 233 ~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 233 QRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHTCBCC
T ss_pred HHHHHHHHcCCCcc
Confidence 99999999876554
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=2.8e-24 Score=225.24 Aligned_cols=281 Identities=15% Similarity=0.167 Sum_probs=246.1
Q ss_pred hhhhhhHHHHHHhhcCC--chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHH
Q 012404 168 EADRDHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 245 (464)
Q Consensus 168 ~~~~~~i~~Lv~~Ls~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 245 (464)
....+.++.|++.|.++ ...+..|++.|.+++..++.++..+.+ .|+++.|+.+|. +.++.+++.|+++|.
T Consensus 113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~------~~~~~v~~~a~~aL~ 185 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLG------SSSDDVREQAVWALG 185 (528)
T ss_dssp HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-CCcHHHHHHHhc------CCCHHHHHHHHHHHH
Confidence 34568899999999753 678999999999999987899999999 899999999999 557899999999999
Q ss_pred ccccCcc-hHHHHhcCCCChHHHHHHH-hcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHH
Q 012404 246 NLSIHDN-NKKLVAETPMVIPLLMDAL-RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDV 323 (464)
Q Consensus 246 ~Ls~~~~-~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 323 (464)
+++.+.. ++..+... |+++.|+.+| .+.+..++..++++|.+|+............|+++.|+.+|.++++.++..|
T Consensus 186 ~l~~~~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 264 (528)
T 4b8j_A 186 NVAGDSPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDA 264 (528)
T ss_dssp HHHHTCHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9997754 56777765 6899999999 5668999999999999999876555555668999999999999999999999
Q ss_pred HHHHHHhccCchhh-hHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChh
Q 012404 324 ASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDR 399 (464)
Q Consensus 324 l~aL~~L~~~~~~~-~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 399 (464)
+++|.+|+...+.+ ..+++.|+++.|+.+|.++ .++..|+++|.+|+.+ ++....+.+.|+++.|+.+|.++.++.
T Consensus 265 ~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 344 (528)
T 4b8j_A 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKS 344 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHH
Confidence 99999999887655 4567889999999999876 6889999999999985 667888899999999999999763599
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 400 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 400 ~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
++..|+++|.+|+..++.....++ +.|+++.|+.+++++++.+++.|.++|.++...
T Consensus 345 v~~~A~~~L~nl~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 345 IKKEACWTISNITAGNKDQIQAVI-NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999999999998776656666 479999999999999999999999999999865
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=3.8e-24 Score=201.32 Aligned_cols=237 Identities=22% Similarity=0.286 Sum_probs=212.2
Q ss_pred hhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 172 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
+.++.|++.|.++ .+.+..|+..|.+++..++.++..+.+ .|+++.|+.+|+ +.+++++..|+++|.+++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD-AGGVEVLVKLLT------STDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHh------CCCHHHHHHHHHHHHHHHcC
Confidence 4688999999654 778999999999999977789999999 899999999999 55789999999999999998
Q ss_pred -cchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcc-cCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHH
Q 012404 251 -DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 328 (464)
Q Consensus 251 -~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 328 (464)
++++..+... |+++.|+.+|++++++++..++++|.+|+. .++++..+.+.|+++.|+++|.++++.++..|+++|.
T Consensus 75 ~~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 75 PDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp CHHHHHHHHHT-THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5677777776 589999999999999999999999999995 5678888999999999999999999999999999999
Q ss_pred HhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHH
Q 012404 329 NLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 404 (464)
Q Consensus 329 ~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 404 (464)
+|+... +.+..+++.|+++.|+++|.++ .++..|+++|.+|+. +++.+..+.+.|+++.|+++++++ ++.+++.|
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a 232 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEA 232 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHH
Confidence 999866 4557788999999999999865 688999999999998 477888899999999999999976 48999999
Q ss_pred HHHHHHHhccChh
Q 012404 405 IAILHTICLSDRT 417 (464)
Q Consensus 405 ~~~L~~L~~~~~~ 417 (464)
+++|.+|+...+.
T Consensus 233 ~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 233 QRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHTCBC
T ss_pred HHHHHHHHcCCCc
Confidence 9999999987653
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=2.4e-24 Score=203.39 Aligned_cols=235 Identities=15% Similarity=0.261 Sum_probs=209.4
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHcc-ccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL-SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 291 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L-s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~ 291 (464)
....+.++..|+ +++++++..|+.+|.++ +.+++++..+... |++|.|+.+|++++++++..|+++|.+|+.
T Consensus 11 ~~~~~~~~~~L~------s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 11 GSELPQMTQQLN------SDDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp TCSHHHHHHHHH------SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHc------CCCHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 356888999998 56789999999999765 4455677778876 589999999999999999999999999998
Q ss_pred -cCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhh-hHHHhcCcHHHHHHHHcCC--chHHHHHHHHH
Q 012404 292 -LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILA 367 (464)
Q Consensus 292 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~-~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~ 367 (464)
.++++..+.+.|+++.|+.+|.++++.+++.|+++|.+|+...+++ ..+++.|++|.|+++|.++ .++..|+++|.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4688889999999999999999999999999999999999999888 7888999999999999876 68899999999
Q ss_pred HhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHH
Q 012404 368 MLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRK 446 (464)
Q Consensus 368 ~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~ 446 (464)
+|+.+ ++.+..+.+.|+++.|+.++.++ ++.+++.|+++|.+|+..++.....++ +.|+++.|+.+++++++.+++.
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~ 241 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKE 241 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTTTTCSSSHHHHT
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhCCCCHHHHHH
Confidence 99985 67778888999999999999976 599999999999999988876655555 5899999999999999999999
Q ss_pred HHHHHHHHhc
Q 012404 447 ATGILERLKR 456 (464)
Q Consensus 447 A~~~L~~l~~ 456 (464)
|.++|.++.+
T Consensus 242 A~~~L~~l~~ 251 (252)
T 4db8_A 242 AQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=4.3e-24 Score=201.67 Aligned_cols=233 Identities=14% Similarity=0.233 Sum_probs=206.2
Q ss_pred hhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 172 DHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 172 ~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
..++.++..|.+ +.+.+..|+..|+++...++.++..+.+ .|+++.|+.+|+ +.+++++..|+++|.+++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLS------SPNEQILQEALWALSNIASG 84 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGG------CSCHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHc------CCCHHHHHHHHHHHHHHhcC
Confidence 457888999965 4788999999997655546778888888 899999999999 55689999999999999985
Q ss_pred -cchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcch-hhhcccCchHHHHHhcccCCHHHHHHHHHHHH
Q 012404 251 -DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 328 (464)
Q Consensus 251 -~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 328 (464)
++++..+... |++|.|+.+|+++++.++..|+++|.+|+..++++ ..+.+.|+++.|+.+|.++++.++..|+++|.
T Consensus 85 ~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 85 GNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp CHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5677788776 58999999999999999999999999999988888 78889999999999999999999999999999
Q ss_pred HhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHH
Q 012404 329 NLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 404 (464)
Q Consensus 329 ~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 404 (464)
+|+... +++..+++.|++|.|+++|.++ .++..|+++|.+|+. +++.+..+.+.|+++.|+.+++++ ++.+++.|
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A 242 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEA 242 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHH
Confidence 999865 5667778899999999999875 688999999999996 577888999999999999999976 48999999
Q ss_pred HHHHHHHhc
Q 012404 405 IAILHTICL 413 (464)
Q Consensus 405 ~~~L~~L~~ 413 (464)
+++|.+|+.
T Consensus 243 ~~~L~~l~~ 251 (252)
T 4db8_A 243 QEALEKLQS 251 (252)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999999875
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=3e-23 Score=217.60 Aligned_cols=279 Identities=14% Similarity=0.094 Sum_probs=244.7
Q ss_pred hhhhhHHHHHHhhcC--CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHc
Q 012404 169 ADRDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLN 246 (464)
Q Consensus 169 ~~~~~i~~Lv~~Ls~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 246 (464)
...+.++.|++.|.+ +...+..|++.|.+++..++..+..+.+ .|+++.|+.+|+ +.++.+++.|+++|.+
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~------~~~~~vr~~A~~aL~~ 199 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLY------TGSVEVKEQAIWALGN 199 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHH------HCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence 456789999999965 4678999999999999977888888888 899999999999 4578999999999999
Q ss_pred cccCc-chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHH
Q 012404 247 LSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVA 324 (464)
Q Consensus 247 Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al 324 (464)
++.+. .++..+... |+++.|+.+|.+.+..++..++++|.+|+... .........|+++.|+.+|.++++.++..|+
T Consensus 200 l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~ 278 (530)
T 1wa5_B 200 VAGDSTDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 278 (530)
T ss_dssp HHTTCHHHHHHHHHT-TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCCCccchHHHHHc-CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHH
Confidence 99875 466666665 68999999999999999999999999999875 5555666689999999999999999999999
Q ss_pred HHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhH
Q 012404 325 SAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRN 400 (464)
Q Consensus 325 ~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 400 (464)
++|.+|+... +....+++.|++|.|+.+|.++ .++..|+.+|.+|+.+ ++....+.+.|+++.|+.+|.++ +..+
T Consensus 279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v 357 (530)
T 1wa5_B 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENI 357 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHH
T ss_pred HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHH
Confidence 9999999765 5567778889999999999865 6789999999999986 56777888899999999999976 4899
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 401 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 401 ~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+..|+++|.+|+..++...+.++ +.|+++.|+.+++++++.+++.|.++|.++...
T Consensus 358 r~~A~~aL~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 358 KKEACWTISNITAGNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999998877666666 579999999999999999999999999999764
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=2.8e-23 Score=217.69 Aligned_cols=278 Identities=15% Similarity=0.193 Sum_probs=237.6
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCc-hhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~-~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
...++.+++.|.++ ...+..|+..|+++..... .....+.+ .|+++.|+.+|.+. .++.++..|+++|.+++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~-~g~v~~Lv~lL~~~-----~~~~v~~~A~~~L~~l~ 146 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ-SGVVPRFVQFLTRE-----DFPQLQFEAAWALTNIA 146 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHH-TTCHHHHHHHHTCT-----TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH-CCCHHHHHHHhCCC-----CCHHHHHHHHHHHHHHh
Confidence 34689999999654 7788999999999866443 56677777 89999999999832 23899999999999999
Q ss_pred cC-cchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhc-ccCCHHHHHHHHH
Q 012404 249 IH-DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLL-DEGHQSAMKDVAS 325 (464)
Q Consensus 249 ~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~ 325 (464)
.+ ++++..++.. |++|.|+.+|.++++.++..|+++|.+|+... .++..+...|+++.|+.+| ...++.++..|++
T Consensus 147 ~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~ 225 (528)
T 4b8j_A 147 SGTSENTKVVIDH-GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 225 (528)
T ss_dssp TSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHhC-CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHH
Confidence 87 4577777776 68999999999999999999999999999764 5678888899999999999 5568999999999
Q ss_pred HHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHHHhccCChhHHH
Q 012404 326 AIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKE 402 (464)
Q Consensus 326 aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 402 (464)
+|.+|+............|++|.|+++|.++ .++..|+++|.+|+..++ ....+.+.|+++.|+.+|.++ ++.++.
T Consensus 226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~ 304 (528)
T 4b8j_A 226 TLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLI 304 (528)
T ss_dssp HHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHH
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHH
Confidence 9999998865555566689999999999865 688999999999998755 456778899999999999976 489999
Q ss_pred HHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHhcc
Q 012404 403 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKRT 457 (464)
Q Consensus 403 ~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g-~~~~k~~A~~~L~~l~~~ 457 (464)
.|+++|.+|+..++...+.++ +.|+++.|+.+++++ ++.+++.|+++|.++...
T Consensus 305 ~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 305 PALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 999999999998876655566 589999999999999 999999999999999853
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=3.5e-22 Score=204.18 Aligned_cols=275 Identities=15% Similarity=0.145 Sum_probs=237.2
Q ss_pred hhHHHHHHhhcCC--chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 172 DHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
+.++.|++.|.++ ...+..|+..|.+++..++.....+.+ .|+++.|+.+|+ +.++.+++.|+++|.+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~------~~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLS------SEFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTHHHHHHHHTT------CSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-CCCHHHHHHHHc------CCCHHHHHHHHHHHHHHcc
Confidence 7899999999654 678999999999999877777777777 899999999999 5578999999999999998
Q ss_pred Ccc-hHHHHhcCCCChHHHHHHHhc-CCHHHHHHHHHHHHHhcccC--cchhhhcccCchHHHHHhcccCCHHHHHHHHH
Q 012404 250 HDN-NKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 325 (464)
Q Consensus 250 ~~~-~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 325 (464)
+.. .+..+... |+++.|+.+|++ .+..++..++++|.+|+... ..+..+. .|+++.|+.++.++++.++..+++
T Consensus 137 ~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 137 DSTMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACW 214 (450)
T ss_dssp TCHHHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHH
Confidence 764 66666665 589999999996 68999999999999999764 2333333 799999999999999999999999
Q ss_pred HHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHH
Q 012404 326 AIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNK 401 (464)
Q Consensus 326 aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 401 (464)
+|.+|+... +++..++..|++|.|+++|.++ .++..|+++|.+|+.+ ++....+.+.|+++.|+.++.++ ++.++
T Consensus 215 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr 293 (450)
T 2jdq_A 215 ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIK 293 (450)
T ss_dssp HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHH
T ss_pred HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHH
Confidence 999999865 5667777889999999999865 6789999999999987 45567788889999999999975 48999
Q ss_pred HHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 402 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 402 ~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
..|+++|.+|+..++...+.++ +.|+++.|+.++.++++.+++.|+++|.++...
T Consensus 294 ~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 294 KEACWTISNITAGNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999999999988776666666 479999999999999999999999999999753
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=2.2e-22 Score=205.73 Aligned_cols=279 Identities=14% Similarity=0.103 Sum_probs=240.4
Q ss_pred hhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 170 DRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
..+.++.|++.++++ ...+..|+..|.+++..++.++..+.+ .|+++.|+.+|.+ +.+..++..|+++|.+++
T Consensus 105 ~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 105 QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-CNILPPLLQLFSK-----QNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHh
Confidence 357899999999754 778999999999999988889998888 8999999999983 246899999999999999
Q ss_pred cCc-c-hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHH
Q 012404 249 IHD-N-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 325 (464)
Q Consensus 249 ~~~-~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 325 (464)
.+. . .+..+. .+++|.|+.+|++++..++..++++|.+|+... ++...+...|+++.|+.+|.++++.++..|++
T Consensus 179 ~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 179 RGKSPPPEFAKV--SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CCSSSCCCGGGT--GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCCHHHH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 765 2 333333 368999999999999999999999999999864 55667778899999999999889999999999
Q ss_pred HHHHhccCchh-hhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHHHhccCChhHH
Q 012404 326 AIFNLCITHEN-KARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNK 401 (464)
Q Consensus 326 aL~~L~~~~~~-~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 401 (464)
+|.+|+...+. +..+++.|+++.|+++|.++ .++..|+++|.+++. +++....+.+.|+++.|+.++.++ ++.++
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~ 335 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTR 335 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHH
Confidence 99999987654 45567889999999999876 688999999999997 567788888899999999999976 48999
Q ss_pred HHHHHHHHHHhcc-ChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 402 ENCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 402 ~~A~~~L~~L~~~-~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
..|+++|.+++.. +++..+.++ +.|+++.|+.+++.+++.+++.|.++|.++....
T Consensus 336 ~~a~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 336 KEAAWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999986 555555566 5799999999999999999999999999987643
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=1.7e-22 Score=211.86 Aligned_cols=278 Identities=14% Similarity=0.228 Sum_probs=237.7
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhc-CchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKR-MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~-~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
.+.++.+++.|.++ ...+..|+..|+.+... ....+..+.+ .|+++.|+.+|.+. .++.++..|+++|.+++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~-~g~i~~Lv~~L~~~-----~~~~v~~~A~~~L~~l~ 159 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQ-AGVVPRLVEFMREN-----QPEMLQLEAAWALTNIA 159 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHH-TTCHHHHHHTTSTT-----SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHH-CCCHHHHHHHhCCC-----CCHHHHHHHHHHHHHHh
Confidence 34688999999654 67889999999998653 2345566777 79999999999832 26899999999999999
Q ss_pred cCcc-hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHHH
Q 012404 249 IHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 326 (464)
Q Consensus 249 ~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 326 (464)
.+.. .+..++.. |++|.|+.+|+++++.++..|+++|.+|+... .++..+...|+++.|+.+|.+.++.++..|+++
T Consensus 160 ~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 238 (530)
T 1wa5_B 160 SGTSAQTKVVVDA-DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238 (530)
T ss_dssp TSCHHHHHHHHHT-TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHH
Confidence 8764 56666655 68999999999999999999999999999864 677888889999999999998899999999999
Q ss_pred HHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHH
Q 012404 327 IFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKE 402 (464)
Q Consensus 327 L~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 402 (464)
|.+|+... .........|++|.|+.+|.++ .++..|+++|.+|+.. ++....+.+.|+++.|+.++.+. +..++.
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~ 317 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQT 317 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHH
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHH
Confidence 99999876 5555666789999999999865 6788999999999986 56788888999999999999865 489999
Q ss_pred HHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 403 NCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 403 ~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
.|+++|.+|+...+...+.++ +.|+++.|+.+++++++.+++.|.++|.++...
T Consensus 318 ~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 318 PALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999998876655555 479999999999999999999999999999853
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=3.4e-23 Score=216.36 Aligned_cols=276 Identities=18% Similarity=0.180 Sum_probs=241.6
Q ss_pred hhhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 170 DRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
..+.++.|+..|++ +...+..|+..|.+++. ++.++..+....|+++.|+.+|.+ +.+++++..|+.+|.+|+
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~-----~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHNLS 88 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHT
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhc-----CCCHHHHHHHHHHHHHHH
Confidence 45789999999964 47789999999999998 566777666535899999999974 336889999999999999
Q ss_pred cCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 249 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 249 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
.+++++..+... |++|.|+.+|+++++.++..++++|.+|+..+ ..+..+.+.|+++.|+++|.+++++++..++.+|
T Consensus 89 ~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 89 HHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp TSHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred cCchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 998899999887 68999999999999999999999999999874 5677788899999999999999999999999999
Q ss_pred HHhccC-chhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHH
Q 012404 328 FNLCIT-HENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 403 (464)
Q Consensus 328 ~~L~~~-~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 403 (464)
.+|+.. ++++..+++.|+++.|+++|.++ .....++.+|.+|+.+++++..+.+.|+++.|+.++.++ ++..++.
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~ 246 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQN 246 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHH
Confidence 999975 57888899999999999999854 466779999999999999999999999999999999876 5899999
Q ss_pred HHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 404 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 404 A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
|+++|.+|+...+.. .. ..++++.|++++.++++.+++.|.++|.+++..
T Consensus 247 a~~~L~~l~~~~~~~--~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 247 CLWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHHHHHHHHTTCTTC--SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCChhh--HH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 999999999876532 11 248899999999999999999999999999774
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=4.9e-23 Score=221.18 Aligned_cols=276 Identities=18% Similarity=0.187 Sum_probs=242.8
Q ss_pred hhhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 170 DRDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
..+.++.|+..|++ +...+..|+..|.+++.. ..++..+....|+++.|+.+|.+ +.+++++..|+.+|.+|+
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-~~~~~~i~~~~~~i~~Lv~~L~~-----~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHNLS 85 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-TTHHHHHTTCHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHT
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-ChhHHHHHhccChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHh
Confidence 45789999999974 478899999999999994 55777776535899999999984 236899999999999999
Q ss_pred cCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 249 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 249 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
.+++++..+... |++|.|+.+|+++++.++..|+++|.+|+... ..+..+.+.|+++.|+.+|++++++++..++.+|
T Consensus 86 ~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 86 HHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp TSHHHHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred cChhhHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 998899888887 68999999999999999999999999999874 5677788899999999999999999999999999
Q ss_pred HHhcc-CchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHH
Q 012404 328 FNLCI-THENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKEN 403 (464)
Q Consensus 328 ~~L~~-~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 403 (464)
.+|+. .++++..+++.|+++.|+++|.+. ..++.++.+|.+|+.+++++..+.+.|+++.|+.++..+ +...++.
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~ 243 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQN 243 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHH
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHH
Confidence 99996 568999999999999999999865 467889999999999999999999999999999999976 5999999
Q ss_pred HHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 404 CIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 404 A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
|+++|.+|+...+.. .. ..++++.|++++.++++.+++.|+++|.+|+..
T Consensus 244 a~~~L~nL~~~~~~~--~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHHGGGCTTC--CS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcchhh--hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999876532 12 247899999999999999999999999999864
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=195.20 Aligned_cols=193 Identities=17% Similarity=0.234 Sum_probs=168.5
Q ss_pred CchhhhhhhcccccccCCCCh--hhHHHHHHHHHccccCc-chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 012404 214 DAIPQLLSPLSESKCENGINP--NLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLS 290 (464)
Q Consensus 214 g~i~~Lv~lL~~~~~~~~~~~--~~~~~A~~~L~~Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls 290 (464)
-.++.|+.+|++ .++ +++..|++.|.+|+.++ +++..+... |++|.|+.+|+++++++++.|+++|.+|+
T Consensus 8 ~~i~~lV~lL~s------~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 8 MTLERAVSMLEA------DHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CCHHHHHHTCCS------SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCC------CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 368999999994 455 88899999999999754 588888887 57999999999999999999999999999
Q ss_pred c-cCcchhhhcccCchHHHHHhccc-CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc--------------
Q 012404 291 A-LDSNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM-------------- 354 (464)
Q Consensus 291 ~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~-------------- 354 (464)
. +++|+..|.+.|+|+.|+++|++ ++.++++.|+.+|+||+..+++|..+++. ++|+|++++.
T Consensus 81 ~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 81 FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccc
Confidence 8 46899999999999999999985 68999999999999999999999999874 7999998663
Q ss_pred ----CCchHHHHHHHHHHhhC-CHHHHHHHHhc-CcHHHHHHHHhcc-----CChhHHHHHHHHHHHHhcc
Q 012404 355 ----DGVHVDELLAILAMLST-NHRAVEEIGDL-GGVSCMLRIIRES-----TCDRNKENCIAILHTICLS 414 (464)
Q Consensus 355 ----~~~~~~~a~~~L~~L~~-~~~~~~~i~~~-g~i~~Lv~ll~~~-----~~~~~~~~A~~~L~~L~~~ 414 (464)
+..++++|..+|.||++ ++++|+.|.++ |+|+.||.+++.+ .+++.+|+|+.+|+||+.+
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 11578999999999998 57999999987 5689999999863 2468899999999999975
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=4.3e-22 Score=213.86 Aligned_cols=279 Identities=17% Similarity=0.171 Sum_probs=235.9
Q ss_pred hhhHHHHHHhhcC--CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
.+.++.|++.|.+ +...+..|+..|.+++. ++.++..+.+ .|+++.|+.+|+ +.++.++..|+.+|.+++
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~lL~------~~~~~v~~~A~~aL~nL~ 126 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFK-SGGIPALVKMLG------SPVDSVLFYAITTLHNLL 126 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHT-TTHHHHHHHHTT------CSSHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHH-cCCHHHHHHHHh------CCCHHHHHHHHHHHHHHH
Confidence 4789999999964 46788999999999999 5679999999 899999999998 557899999999999999
Q ss_pred cCcc-hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcc-cCcchhhhcccCchHHHHHhcccC-CHHHHHHHHH
Q 012404 249 IHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA-LDSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVAS 325 (464)
Q Consensus 249 ~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~ 325 (464)
.+.+ .+..+... |++|.|+.+|+++++..+..++.+|.+|+. +++++..+.+.|+++.|+.+|++. ....++.++.
T Consensus 127 ~~~~~~~~~v~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~ 205 (644)
T 2z6h_A 127 LHQEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 205 (644)
T ss_dssp HHSTTHHHHHHHT-THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hCcchhHHHHHHC-CChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHH
Confidence 8754 55566655 689999999999999999999999999997 568899999999999999999876 4677899999
Q ss_pred HHHHhccCchhhhHHHhcCcHHHHHHHHcC---------------------------------------C--chHHHHHH
Q 012404 326 AIFNLCITHENKARAVRDGGVSVILKKIMD---------------------------------------G--VHVDELLA 364 (464)
Q Consensus 326 aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~---------------------------------------~--~~~~~a~~ 364 (464)
+|++|+.+.+++..+++.|+++.|++++.+ + .+++.|++
T Consensus 206 ~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~ 285 (644)
T 2z6h_A 206 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 285 (644)
T ss_dssp HHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999998888887765543 2 45677888
Q ss_pred HHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccC-ChhHHHHHHHHHHHHhccChh--hHHHHHHhhccHHHHHHHhhcCC
Q 012404 365 ILAMLSTN-HRAVEEIGDLGGVSCMLRIIREST-CDRNKENCIAILHTICLSDRT--KWKAMREEESTHGTISKLAQDGT 440 (464)
Q Consensus 365 ~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~A~~~L~~L~~~~~~--~~~~~~~~~g~~~~L~~Ll~~g~ 440 (464)
+|.+|+.. ++++..+.+.|+++.|+.++.+.. .+.+++.|+++|.+|+...++ ..+..+...|+++.|++++.+++
T Consensus 286 aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~ 365 (644)
T 2z6h_A 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccC
Confidence 88888886 578889999999999999998743 268999999999999986542 23343445899999999998875
Q ss_pred -HHHHHHHHHHHHHHhccc
Q 012404 441 -ARAKRKATGILERLKRTV 458 (464)
Q Consensus 441 -~~~k~~A~~~L~~l~~~~ 458 (464)
+.+++.|.++|.|+...+
T Consensus 366 ~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 366 HWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSG
T ss_pred chHHHHHHHHHHHHHccCH
Confidence 689999999999998654
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=6.5e-22 Score=206.57 Aligned_cols=282 Identities=15% Similarity=0.121 Sum_probs=239.3
Q ss_pred chhhhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHH
Q 012404 167 TEADRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLL 245 (464)
Q Consensus 167 ~~~~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 245 (464)
...+.+.++.|++.++++ ...+..|+..|.+++..++..+..+.+ .|+++.|+.+|. +.++.++..++.+|.
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~------~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLN------KTNVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGG------CCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHh------cCCHHHHHHHHHHHH
Confidence 344568899999999754 678899999999999977788888888 899999999999 456788999999999
Q ss_pred ccccC-cchHHHHhcCCCChHHHHHHHhcCC-HHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHH
Q 012404 246 NLSIH-DNNKKLVAETPMVIPLLMDALRSGT-IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDV 323 (464)
Q Consensus 246 ~Ls~~-~~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 323 (464)
+++.+ ++++..+... |+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.++++.++..+
T Consensus 169 ~la~~~~~~~~~i~~~-~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a 247 (529)
T 1jdh_A 169 ILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247 (529)
T ss_dssp HHHTTCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHC-CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHH
Confidence 99886 4677888876 57999999999875 567777889999999998999999999999999999999999999999
Q ss_pred HHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhcc-CChh
Q 012404 324 ASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES-TCDR 399 (464)
Q Consensus 324 l~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~-~~~~ 399 (464)
+++|.+|+....... ...|++|.|+++|.++ .++..|+++|.+|+.+ ++++..+.+.|+++.|++++.+. .++.
T Consensus 248 ~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 248 LWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 999999998764322 2348899999999865 6889999999999986 67999999999999999999863 3378
Q ss_pred HHHHHHHHHHHHhccChhh--HHHHHHhhccHHHHHHHhhcCC-HHHHHHHHHHHHHHhccc
Q 012404 400 NKENCIAILHTICLSDRTK--WKAMREEESTHGTISKLAQDGT-ARAKRKATGILERLKRTV 458 (464)
Q Consensus 400 ~~~~A~~~L~~L~~~~~~~--~~~~~~~~g~~~~L~~Ll~~g~-~~~k~~A~~~L~~l~~~~ 458 (464)
+++.|+++|++|+..+++. .+..+.+.|+++.|..+++++. +.+++.|.++|.|+...+
T Consensus 326 v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence 9999999999999875432 2334446899999999998886 589999999999998643
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=9.6e-22 Score=180.37 Aligned_cols=194 Identities=15% Similarity=0.281 Sum_probs=174.1
Q ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhcc-Cchhhh
Q 012404 261 PMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI-THENKA 338 (464)
Q Consensus 261 ~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~-~~~~~~ 338 (464)
.+..|.|+.+|++++++.+..|+++|.+|+.. ++++..+.+.|+++.|+.+|.++++.++..|+++|.+|+. .++++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 35789999999999999999999999999964 5778889999999999999999999999999999999996 457888
Q ss_pred HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccC
Q 012404 339 RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSD 415 (464)
Q Consensus 339 ~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~ 415 (464)
.+++.|++|.|+++|.++ .++..|+++|.+|+.+ ++.+..+.+.|+++.|+++++++ ++.+++.|+++|.+|+..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence 899999999999999876 6889999999999975 66778889999999999999976 5999999999999999987
Q ss_pred hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 416 RTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 416 ~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
++....+. +.|+++.|+++++++++.++++|.++|+++++
T Consensus 170 ~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 76654555 58999999999999999999999999999975
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=8.7e-23 Score=189.66 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=169.1
Q ss_pred ChHHHHHHHhcCCH--HHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccC-chhhh
Q 012404 263 VIPLLMDALRSGTI--ETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCIT-HENKA 338 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~--~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~-~~~~~ 338 (464)
.+|.||++|+++++ +.+..|+++|.+|+.. ++++..|.+.|+||.||++|+++++++++.|+++|.||+.. ++|+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999987 8999999999999974 57899999999999999999999999999999999999984 68999
Q ss_pred HHHhcCcHHHHHHHHc-CC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHh---cc------------CChhH
Q 012404 339 RAVRDGGVSVILKKIM-DG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIR---ES------------TCDRN 400 (464)
Q Consensus 339 ~iv~~g~v~~Lv~lL~-~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~---~~------------~~~~~ 400 (464)
.+++.|+||.|+++|. .+ .+++.|+.+|++|+..++++..+.+. +++.|++++. ++ .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999997 33 68999999999999999999999874 6999997653 12 13589
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC------CHHHHHHHHHHHHHHhc
Q 012404 401 KENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG------TARAKRKATGILERLKR 456 (464)
Q Consensus 401 ~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g------~~~~k~~A~~~L~~l~~ 456 (464)
+++|..+|+||+..+++..+.+....|+++.|+.+++.+ +...++.|..+|+||+.
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 999999999999987776677776668899999998663 55799999999999975
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=8.3e-22 Score=215.76 Aligned_cols=276 Identities=18% Similarity=0.182 Sum_probs=241.7
Q ss_pred hhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
.+.++.|+..|++ +...|..|+..|.+++. +..++..+....|+++.|+.+|++ +.+++++..|+.+|.+|+.
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~-----~~d~~vr~~Aa~aL~~Ls~ 222 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTSGTLHNLSH 222 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhC
Confidence 6789999999965 47789999999999998 566777777535899999999984 2378999999999999999
Q ss_pred CcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHH
Q 012404 250 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 328 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 328 (464)
.++++..+... |++|.|+.+|+++++.++..|+++|.+|+... +.+..+.+.|+++.|+.+|.+++..++..++.+|.
T Consensus 223 ~~~~~~~i~~~-g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 223 HREGLLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp SHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 98888888876 68999999999999999999999999999874 56667778999999999999989999999999999
Q ss_pred HhccC-chhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHH
Q 012404 329 NLCIT-HENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 404 (464)
Q Consensus 329 ~L~~~-~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 404 (464)
+|+.. .+++..+++.|+++.|+++|.++ ...+.++.+|.+|+.+++++..+++.|+++.|+.++.++ +...++.|
T Consensus 302 ~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a 380 (780)
T 2z6g_A 302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNC 380 (780)
T ss_dssp HHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHH
T ss_pred HHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC-chHHHHHH
Confidence 99974 58899999999999999999865 356779999999999999999999999999999999876 48899999
Q ss_pred HHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 405 IAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 405 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
+++|.+|+...+.. .. ..++++.|++++.+.++.+++.|+++|.+|+...
T Consensus 381 ~~~L~~L~~~~~~~--~~--~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 381 LWTLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp HHHHHHHHTTCTTC--SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhccchhh--hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999876432 11 2578999999999999999999999999998753
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=1.4e-21 Score=213.95 Aligned_cols=271 Identities=15% Similarity=0.200 Sum_probs=222.5
Q ss_pred hhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 172 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
.+++.+++.|.+. ...+..++..|+.. .+..+. .|+++.|+.+|. +.++.+++.|+.+|.+|+.+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~--~g~ip~Lv~lL~------~~d~~vr~~A~~~L~~L~~~ 180 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA--TRAIPELTKLLN------DEDQVVVNKAAVMVHQLSKK 180 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH--hCCHHHHHHHHC------CCCHHHHHHHHHHHHHHhCC
Confidence 3578899999765 55566666666533 233444 599999999998 55789999999999999999
Q ss_pred cchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 251 DNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
+.++..+...+++++.|+.+|+++ +++++..|+.+|.+|+...+++..+++.|+|+.|+.+|+++++.++..|+++|.+
T Consensus 181 ~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888886667999999999876 8999999999999999988888899999999999999999999999999999999
Q ss_pred hccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHH
Q 012404 330 LCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 405 (464)
Q Consensus 330 L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~ 405 (464)
|+... +.+..+++.|+++.|+++|.++ .++..++.+|.+++. +++++..+.+.|+++.|+.+++.+.....++.|+
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~ 340 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 340 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 99875 5566666899999999999875 567889999999997 5889999999999999999999876677788999
Q ss_pred HHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 406 AILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 406 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
.+|++|+.... ....++ +.|+++.|+.++.++++.+++.|.++|.++++..
T Consensus 341 ~aL~~Ls~~~~-~~~~i~-~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 341 RVLKVLSVCSS-NKPAIV-EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHHHHHHTSTT-HHHHHH-HTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcChH-HHHHHH-HhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 99999997543 334455 5899999999999999999999999999998654
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.4e-21 Score=205.37 Aligned_cols=279 Identities=13% Similarity=0.101 Sum_probs=227.4
Q ss_pred hhhhHHHHHHhhcC--CchhHHHHHHHHHHHhhcCc-------------------------------------h-hhhhh
Q 012404 170 DRDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRMP-------------------------------------S-FRALF 209 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~--~~~~~~~a~~~L~~L~~~~~-------------------------------------~-~r~~i 209 (464)
+.+.++.|++.++. .......++..|.|++...+ . ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 45567888888863 34566677777777776222 1 46677
Q ss_pred hhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHH---HHHHHHHHH
Q 012404 210 GESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIE---TRSNAAAAL 286 (464)
Q Consensus 210 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~---~~~~aa~~L 286 (464)
.+ .|+|+.|+.+++ +.++.+++.|+++|.|++.++++|..++.. |+++.|+.+|.+++.. .+..|+.+|
T Consensus 454 ~e-aGvIp~Lv~Ll~------S~s~~~re~A~~aL~nLS~d~~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~AA~AL 525 (778)
T 3opb_A 454 LR-TELISFLKREMH------NLSPNCKQQVVRIIYNITRSKNFIPQLAQQ-GAVKIILEYLANKQDIGEPIRILGCRAL 525 (778)
T ss_dssp TT-TTHHHHHHHHGG------GSCHHHHHHHHHHHHHHHTSGGGHHHHHHT-THHHHHHHHTTCC---CCHHHHHHHHHH
T ss_pred HH-CcCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 88 899999999998 457899999999999999999999999987 5799999999998654 899999999
Q ss_pred HHhcccCcchhhhcc---cCchHHHHHhccc--CCH------------HHHHHHHHHHHHhccCc-----hhhhHHHhc-
Q 012404 287 FTLSALDSNKEVIGK---SGALKPLIDLLDE--GHQ------------SAMKDVASAIFNLCITH-----ENKARAVRD- 343 (464)
Q Consensus 287 ~~Ls~~~~~~~~i~~---~g~i~~Lv~lL~~--~~~------------~~~~~al~aL~~L~~~~-----~~~~~iv~~- 343 (464)
.+|....+....+.. .|+|++|+.||.. +.. -.+..|+.||.||+..+ +.|.++++.
T Consensus 526 ArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ 605 (778)
T 3opb_A 526 TRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTK 605 (778)
T ss_dssp HHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSH
T ss_pred HHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc
Confidence 999987666655532 4999999999983 211 12779999999999986 348889985
Q ss_pred CcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHH-HHHHhcC------cHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 344 GGVSVILKKIMDG--VHVDELLAILAMLSTNHRAV-EEIGDLG------GVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 344 g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~-~~i~~~g------~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
|++|.|..+|.++ .++..|+++++||+.+++++ +.+...+ .++.||.+++.+ +..+++.|+++|.+++..
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCC
Confidence 9999999999865 68899999999999999875 3554322 478899999875 599999999999999887
Q ss_pred ChhhHHHHHHhhccHHHHHHHhhc--CCHHHHHHHHHHHHHHhcc
Q 012404 415 DRTKWKAMREEESTHGTISKLAQD--GTARAKRKATGILERLKRT 457 (464)
Q Consensus 415 ~~~~~~~~~~~~g~~~~L~~Ll~~--g~~~~k~~A~~~L~~l~~~ 457 (464)
.+..++.++...++++.++.+++. +++.++.++..++.||...
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 777777888766899999999988 8999999999999999864
No 35
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.87 E-value=1e-22 Score=217.84 Aligned_cols=120 Identities=25% Similarity=0.315 Sum_probs=100.0
Q ss_pred HHHHHHHHh-hCCCCCHHHHHHHHHHHHHh-h--hh----hh---hh-----h-hhhhhhccCCCCCCcccCccchhhcc
Q 012404 32 LQKLVRLIV-DDVDYRTETIDQARDTLCAL-K--EL----KT---KK-----R-SLSLKLHETVSCPEEFKCPLSKELMR 94 (464)
Q Consensus 32 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~--~~----~~---~~-----~-~~~~~~~~~~~~p~~f~CPi~~~~m~ 94 (464)
..+|++||+ |||||++++|++|.++|++. + .. ++ .. + ....++.+..++|++|+||||+++|+
T Consensus 823 ~~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~ 902 (968)
T 3m62_A 823 QSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMK 902 (968)
T ss_dssp CHHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCS
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHh
Confidence 468999997 78999999999999999653 2 11 01 00 1 11122345689999999999999999
Q ss_pred CcccCCCC-ccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcCC
Q 012404 95 DPVILASG-QTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGI 152 (464)
Q Consensus 95 dPv~~~~g-~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~~ 152 (464)
|||++|+| +||||++|++|+.+ +.+||+||+|++..+++||++||+.|++||.++..
T Consensus 903 DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 903 DPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp SEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 99999997 79999999999998 68999999999999999999999999999998753
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=3.7e-21 Score=176.42 Aligned_cols=193 Identities=14% Similarity=0.235 Sum_probs=172.4
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc-chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD-NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSA 291 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~ 291 (464)
.|..+.|+.+|+ +.+++++..|+++|.+++.++ +++..+.+. |++|.|+.+|++++++++..|+++|.+|+.
T Consensus 11 ~~~~~~l~~LL~------s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 11 GSELPQMVQQLN------SPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp --CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHhc------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 588999999998 668999999999999999655 567777776 589999999999999999999999999996
Q ss_pred -cCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHH
Q 012404 292 -LDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILA 367 (464)
Q Consensus 292 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~ 367 (464)
.++++..+.+.|+++.|+.+|+++++.++..|+++|.||+... +.+..+++.|++|.|+++|.++ .++..|+++|.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4577888999999999999999999999999999999999765 5566788999999999999865 68999999999
Q ss_pred HhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 368 MLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 368 ~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
+|+.. ++.+..+.+.|+++.|++++.++ ++.+++.|+++|.+|+.
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 99997 78889999999999999999965 59999999999999975
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.84 E-value=1.1e-21 Score=153.10 Aligned_cols=76 Identities=37% Similarity=0.609 Sum_probs=71.0
Q ss_pred ccCCCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcC
Q 012404 75 HETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQG 151 (464)
Q Consensus 75 ~~~~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~ 151 (464)
.+..++|++|+||||+++|+|||++||||+|||.+|++|+.. +.+||+|+++++..+++||..|++.|+.|+.+++
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 355679999999999999999999999999999999999996 6899999999999999999999999999998764
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.84 E-value=2.2e-21 Score=155.28 Aligned_cols=78 Identities=31% Similarity=0.468 Sum_probs=72.5
Q ss_pred cCCCCCCcccCccchhhccCcccCCCC-ccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcCCCC
Q 012404 76 ETVSCPEEFKCPLSKELMRDPVILASG-QTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIEL 154 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv~~~~g-~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~~~~ 154 (464)
...++|++|+||||+++|+|||++||| |+|||.+|++||.. +.+||+|+++++..+++||..||+.|+.|+.++++..
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~ 93 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQS 93 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCS
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhh
Confidence 456799999999999999999999999 99999999999987 6799999999999999999999999999999886553
No 39
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.2e-19 Score=192.45 Aligned_cols=275 Identities=12% Similarity=0.123 Sum_probs=219.4
Q ss_pred hHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
-.+.+++.|..+ ...+..|+..|..++. ++..|+.+++..|++..|+.+++. ..+..+.-.++.+|.||+...
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~-----~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKS-----QKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTT-----TCCTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHhcCCC
Confidence 445566666553 4558899999999999 789999998867889999999984 135677888889999986532
Q ss_pred c---------------------------------------hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 252 N---------------------------------------NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 252 ~---------------------------------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
+ ++..+.+. |++|.|+.+++++++..+..++++|.+|+.+
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea-GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT-ELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT-THHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 2 23455554 7999999999999999999999999999999
Q ss_pred CcchhhhcccCchHHHHHhcccCCHH---HHHHHHHHHHHhccCchhhhHHH--h-cCcHHHHHHHHcC-Cc--------
Q 012404 293 DSNKEVIGKSGALKPLIDLLDEGHQS---AMKDVASAIFNLCITHENKARAV--R-DGGVSVILKKIMD-GV-------- 357 (464)
Q Consensus 293 ~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~al~aL~~L~~~~~~~~~iv--~-~g~v~~Lv~lL~~-~~-------- 357 (464)
.++|..+++.|+++.|+.+|.+++.. ++..|+.+|.+|....+....+- . .|+||+|+++|.. +.
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~ 567 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence 99999999999999999999887543 79999999999986554333331 1 3899999999982 21
Q ss_pred ------h-HHHHHHHHHHhhCCH-----HHHHHHHhc-CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHH
Q 012404 358 ------H-VDELLAILAMLSTNH-----RAVEEIGDL-GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE 424 (464)
Q Consensus 358 ------~-~~~a~~~L~~L~~~~-----~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~ 424 (464)
. +..|+.+|.||++.+ +.|..++++ |+++.|..+|.++ +..+++.|++++.||+.......+.+..
T Consensus 568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~ 646 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFN 646 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSC
T ss_pred cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 1 668999999999975 457888885 9999999999976 4899999999999999855321123331
Q ss_pred -----hhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 425 -----EESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 425 -----~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
..+.++.|+.|++.++.++|+.|+++|.|+.
T Consensus 647 ~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 647 LENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp CSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 1234789999999999999999999999995
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.84 E-value=1.9e-21 Score=156.23 Aligned_cols=77 Identities=36% Similarity=0.580 Sum_probs=71.6
Q ss_pred ccCCCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcCC
Q 012404 75 HETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGI 152 (464)
Q Consensus 75 ~~~~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~~ 152 (464)
.+..++|++|+||||+++|+|||++||||+|||.+|++||.. +.+||+|+++++..+++||..|++.|+.|+.+++.
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 355679999999999999999999999999999999999986 68999999999999999999999999999988753
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.82 E-value=1.6e-20 Score=165.58 Aligned_cols=78 Identities=31% Similarity=0.446 Sum_probs=72.7
Q ss_pred cCCCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcCCC
Q 012404 76 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIE 153 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~~~ 153 (464)
...++|++|+||||+++|+|||++||||+|||.+|++|+..++.+||+|+++++..+++||..|++.|+.|+..+++.
T Consensus 99 ~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 99 KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 456799999999999999999999999999999999999875457999999999999999999999999999998764
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.82 E-value=3.9e-19 Score=171.85 Aligned_cols=221 Identities=18% Similarity=0.152 Sum_probs=182.0
Q ss_pred hhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHH-HHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHh
Q 012404 234 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMD-ALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDL 311 (464)
Q Consensus 234 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~-lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~l 311 (464)
.+.+..|+..|.++..+.+++..+... |++|.|+. +|+++++.++..|+++|.+++.++ ..+..+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~-G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQL-SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHc-CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 467888999999999988888888876 47899999 999999999999999999999865 578889999999999999
Q ss_pred cccC-CHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHH
Q 012404 312 LDEG-HQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVS 386 (464)
Q Consensus 312 L~~~-~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~ 386 (464)
|+++ ++.+++.|+++|.||+.+. .....+++.|++|.|+.+|.++ .++..|+++|.+|+.+ ++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9975 8899999999999999765 5566788899999999999875 7889999999999875 77899999999999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHh-hccHHHH---HHHhh-cC-CHHHHHHHHHHHHHHhc
Q 012404 387 CMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREE-ESTHGTI---SKLAQ-DG-TARAKRKATGILERLKR 456 (464)
Q Consensus 387 ~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~-~g~~~~L---~~Ll~-~g-~~~~k~~A~~~L~~l~~ 456 (464)
.|+.+|.+. +..+++.|+.+|.+|....+......... ..+...| .+-++ .. +....++|..++.++..
T Consensus 213 ~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCC-ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 999999976 48999999999999999865432222211 1111222 22234 33 56789999999998864
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.80 E-value=1.2e-18 Score=168.36 Aligned_cols=182 Identities=13% Similarity=0.130 Sum_probs=163.3
Q ss_pred CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHH-hcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHHH
Q 012404 274 GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCITH-ENKARAVRDGGVSVILK 351 (464)
Q Consensus 274 ~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~ 351 (464)
++.+.+..|+..|.+++...+++..+...|+++.|+. +|.++++.++..|+++|.+++.++ ..+..+++.|++|.|++
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3457888999999999998889999999999999999 999999999999999999999876 57788889999999999
Q ss_pred HHcCC---chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhc
Q 012404 352 KIMDG---VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEES 427 (464)
Q Consensus 352 lL~~~---~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g 427 (464)
+|.++ .+++.|+++|++|+.+ ++....+.+.|+++.|+.+|+++ +..++..|+++|.+|+..+++....++ +.|
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv-~~g 209 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC-SMG 209 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHH-HTT
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHH-HcC
Confidence 99842 6789999999999975 67788899999999999999976 599999999999999998777655666 589
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 428 THGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 428 ~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+++.|+.|+.+++..+++.|..+|.++.+.
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999765
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.73 E-value=1.8e-18 Score=133.03 Aligned_cols=76 Identities=53% Similarity=1.083 Sum_probs=71.2
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcCCC
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIE 153 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~~~ 153 (464)
.++|++|.||||+++|.|||++||||+|+|.||.+|+..+..+||.||+++...++.||..|++.|+.|..+++++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999999999876789999999999999999999999999999988753
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=136.54 Aligned_cols=73 Identities=25% Similarity=0.482 Sum_probs=64.8
Q ss_pred CCCCcccCccchhhccCcccCC-CCccccHHHHHHHHHcC-----CCCCCCCccc---ccCCCCcchHHHHHHHHHHHHH
Q 012404 79 SCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG-----NRTCPRTQQV---LSHTILTPNHLIREMISQWCRS 149 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~-----~~~~P~~~~~---l~~~~l~~n~~lk~~i~~~~~~ 149 (464)
..+++|+||||+++|+|||++| |||+|||.+|++||..+ ..+||+++.+ ++..+|+||..|++.|+.|+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999997 99999999999999863 3589996655 8889999999999999999877
Q ss_pred cC
Q 012404 150 QG 151 (464)
Q Consensus 150 ~~ 151 (464)
++
T Consensus 83 ~~ 84 (94)
T 2yu4_A 83 RH 84 (94)
T ss_dssp CC
T ss_pred hc
Confidence 64
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=7.9e-18 Score=161.88 Aligned_cols=78 Identities=31% Similarity=0.446 Sum_probs=72.8
Q ss_pred cCCCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHcCCC
Q 012404 76 ETVSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQGIE 153 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~~~~ 153 (464)
...++|++|+||||+++|+|||++||||+|||.||++|+..+..+||+|+++++..+++||..|++.|+.|+.++++.
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 456799999999999999999999999999999999999976667999999999999999999999999999988764
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.61 E-value=1.1e-16 Score=115.98 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=49.9
Q ss_pred cccCccchhhccCcccC-CCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchH
Q 012404 83 EFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNH 137 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~ 137 (464)
+|.||||+++|+|||++ ++||+|||++|++|+.. +.+||+|+++++.++|+||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 69999999999999999 89999999999999987 46799999999999999875
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.58 E-value=1e-13 Score=143.67 Aligned_cols=278 Identities=15% Similarity=0.190 Sum_probs=217.4
Q ss_pred hhhHHHHHHhhcCC--chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSAT--LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
.++|+.|+..++++ .++|+.|+..|+.++++ ++..++. ++++.|+..|+.. ..|.++...++.+|.++.
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d----~~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTD----RSDSEIIGYALDTLYNII 90 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSC----TTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcc----cccHHHHHHHHHHHHHHh
Confidence 56899999999654 78999999999999874 5666665 7899999999865 458899999999998864
Q ss_pred cCcc------------------hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc--chhhhc-ccCchHH
Q 012404 249 IHDN------------------NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIG-KSGALKP 307 (464)
Q Consensus 249 ~~~~------------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~-~~g~i~~ 307 (464)
..++ +...+....+.++.|+.+|++.+...|.+++..|..|+.... .+..|. ..++|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~ 170 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSR 170 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHH
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHH
Confidence 3322 122455556789999999999999999999999999998653 466666 4699999
Q ss_pred HHHhcccCCHHHHHHHHHHHHHhccCchhhhHHH-hcCcHHHHHHHHcCC------chHHHHHHHHHHhhCC-HHHHHHH
Q 012404 308 LIDLLDEGHQSAMKDVASAIFNLCITHENKARAV-RDGGVSVILKKIMDG------VHVDELLAILAMLSTN-HRAVEEI 379 (464)
Q Consensus 308 Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv-~~g~v~~Lv~lL~~~------~~~~~a~~~L~~L~~~-~~~~~~i 379 (464)
|+.+|++....++..|+.+|.+|+.++.+.++++ -+|+++.|+.++..+ .+.+.|+.+|.||... +.++..|
T Consensus 171 Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~F 250 (651)
T 3grl_A 171 LMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFF 250 (651)
T ss_dssp HHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999888899999999999999887666665 469999999999742 4688899999999986 6799999
Q ss_pred HhcCcHHHHHHHHhccCC-----hhHHHH---HHHHHHHHhccCh-----hhHHHHHHhhccHHHHHHHhhcC--CHHHH
Q 012404 380 GDLGGVSCMLRIIRESTC-----DRNKEN---CIAILHTICLSDR-----TKWKAMREEESTHGTISKLAQDG--TARAK 444 (464)
Q Consensus 380 ~~~g~i~~Lv~ll~~~~~-----~~~~~~---A~~~L~~L~~~~~-----~~~~~~~~~~g~~~~L~~Ll~~g--~~~~k 444 (464)
.+.|+++.|..++..+.. +....+ ++.++..|...+. ...+..+.+.|++..|++++-.. ...++
T Consensus 251 rEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~ 330 (651)
T 3grl_A 251 KEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330 (651)
T ss_dssp HHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred HHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence 999999999999875321 112233 6666666666421 12344555689999999987654 55688
Q ss_pred HHHHHHHHHHhcc
Q 012404 445 RKATGILERLKRT 457 (464)
Q Consensus 445 ~~A~~~L~~l~~~ 457 (464)
..|..++..+.+-
T Consensus 331 ~~Al~tla~~irg 343 (651)
T 3grl_A 331 TETINTVSEVIRG 343 (651)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 8888888776543
No 49
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=114.22 Aligned_cols=78 Identities=26% Similarity=0.503 Sum_probs=68.9
Q ss_pred cCCCCCCcccCccchhhccCcccCC-CCccccHHHHHHHHHcC-CCCCCCCcccc-cCCCCcchHHHHHHHHHHHHHcCC
Q 012404 76 ETVSCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG-NRTCPRTQQVL-SHTILTPNHLIREMISQWCRSQGI 152 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~-~~~~P~~~~~l-~~~~l~~n~~lk~~i~~~~~~~~~ 152 (464)
+..+++++|.||||.++|.|||++| |||+||+.||.+|+... ...||.||+++ ....+.+|..+++.++.|...++.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 3456889999999999999999999 99999999999999753 46899999997 577899999999999999887654
Q ss_pred C
Q 012404 153 E 153 (464)
Q Consensus 153 ~ 153 (464)
.
T Consensus 86 ~ 86 (92)
T 3ztg_A 86 T 86 (92)
T ss_dssp C
T ss_pred H
Confidence 3
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.39 E-value=1.6e-13 Score=115.01 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=62.7
Q ss_pred CCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccC-CCCcchHHHHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH-TILTPNHLIREMISQWCR 148 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~-~~l~~n~~lk~~i~~~~~ 148 (464)
+++++.||||.++|.|||++||||+||+.||.+|+..+...||.||+++.. ..+.+|..++..++.|..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 345899999999999999999999999999999999656699999999987 789999999999998854
No 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.35 E-value=2.2e-13 Score=125.51 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=62.7
Q ss_pred CCCcccCccchhhccCcccC-CCCccccHHHHHHHHHcC-CCCCCC--CcccccCCCCcchHHHHHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAG-NRTCPR--TQQVLSHTILTPNHLIREMISQWCRS 149 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~-~~~~P~--~~~~l~~~~l~~n~~lk~~i~~~~~~ 149 (464)
...+|+||||+++|+|||+. .|||+|||.||.+||..+ ...||+ |++++...+|.||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 45679999999999999985 999999999999999863 357999 88999999999999999999999764
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.35 E-value=4.2e-13 Score=115.99 Aligned_cols=69 Identities=23% Similarity=0.448 Sum_probs=63.2
Q ss_pred CCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCC-CCcchHHHHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT-ILTPNHLIREMISQWCR 148 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~-~l~~n~~lk~~i~~~~~ 148 (464)
+++++.||||.++|.|||++||||+||+.||.+|+..+...||.||.++... .+.+|..+++.++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999999999999999999997556899999999887 89999999999998853
No 53
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.31 E-value=1e-10 Score=121.28 Aligned_cols=247 Identities=10% Similarity=0.096 Sum_probs=194.4
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCch-hhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPS-FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~-~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
.+.|..|+..|.+. -..+..+++.|..++...+. +++.|...+++|+.|+++|. +....++.+|+..|.+|+
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~------d~rE~iRneallLL~~Lt 194 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA------DSREVIRNDGVLLLQALT 194 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG------CSSHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh------CchHHHHHHHHHHHHHHh
Confidence 46788999999755 67788999999999987777 88989875799999999999 556788999999999999
Q ss_pred cCcchHHHHhcCCCChHHHHHHHhcCC----HHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCC------H
Q 012404 249 IHDNNKKLVAETPMVIPLLMDALRSGT----IETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGH------Q 317 (464)
Q Consensus 249 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~----~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~------~ 317 (464)
.+..+.+.++.-.|+++.|+.+++... ..+...++.+|.+|...+ .|+..+.+.|.++.|..+|..+. +
T Consensus 195 ~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~ 274 (651)
T 3grl_A 195 RSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSA 274 (651)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCH
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHH
Confidence 999877767666679999999998643 367888999999999865 68999999999999999997542 2
Q ss_pred HHHHH---HHHHHHHhccCc-------hhhhHHHhcCcHHHHHHHHcCC----chHHHHHHHHHHhhCC-HHHHHHHHhc
Q 012404 318 SAMKD---VASAIFNLCITH-------ENKARAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTN-HRAVEEIGDL 382 (464)
Q Consensus 318 ~~~~~---al~aL~~L~~~~-------~~~~~iv~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~-~~~~~~i~~~ 382 (464)
....+ ++.++.-|+... .|+..+.+.|+++.|++++... .++..|+.+++.+..+ +.++..+.+.
T Consensus 275 Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~ 354 (651)
T 3grl_A 275 QKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASV 354 (651)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 23444 677777776542 3677888999999999999854 5778899999999885 6788887654
Q ss_pred C---------cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHH
Q 012404 383 G---------GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMR 423 (464)
Q Consensus 383 g---------~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~ 423 (464)
. .+..|+.++.+......+-.|+.++.....++......++
T Consensus 355 ~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~ 404 (651)
T 3grl_A 355 NAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404 (651)
T ss_dssp EESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 2 2333445565545578889999999999988875433444
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.1e-12 Score=103.60 Aligned_cols=70 Identities=14% Similarity=0.344 Sum_probs=64.1
Q ss_pred CCCcccCccchhhccCcccC-CCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHc
Q 012404 80 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQ 150 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~ 150 (464)
+++++.||||.+.|.|||++ +|||+||+.||.+|+.. ..+||.||.++...++.+|..+++.++.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45589999999999999988 89999999999999986 579999999999889999999999999997754
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.25 E-value=3.9e-10 Score=102.82 Aligned_cols=190 Identities=19% Similarity=0.195 Sum_probs=152.4
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
.+.++.|+..|. +.++.++..|+..|..+.. ...++.|+.+|.++++.+|..++.+|..+.
T Consensus 18 ~~~~~~L~~~L~------~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQ------DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-- 78 (211)
T ss_dssp GGGHHHHHHHTT------CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--
T ss_pred HhHHHHHHHHHc------CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--
Confidence 578999999998 5678999999999987532 247899999999999999999999998874
Q ss_pred CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012404 293 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 370 (464)
Q Consensus 293 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 370 (464)
..++++.|+.+|.++++.++..|+.+|..+.. .++++.|+++|.++ .++..|+.+|..+.
T Consensus 79 --------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 79 --------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp --------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred --------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 34678999999999999999999999998743 35789999999876 57888999998884
Q ss_pred CCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHH
Q 012404 371 TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI 450 (464)
Q Consensus 371 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~ 450 (464)
. ...++.|+.++.+. ++.++..|+.+|..+.. ...++.|..+++++++.++..|...
T Consensus 141 ~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNY 197 (211)
T ss_dssp C----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2 34688999999755 58999999999998743 2456778888999999999999999
Q ss_pred HHHHhccccccC
Q 012404 451 LERLKRTVNLTH 462 (464)
Q Consensus 451 L~~l~~~~~~~~ 462 (464)
|..+.......+
T Consensus 198 L~~~~~~~~~~~ 209 (211)
T 3ltm_A 198 LETHKSFNHHHH 209 (211)
T ss_dssp HHC---------
T ss_pred HHhcCCCCCCCC
Confidence 999988766544
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.21 E-value=5.6e-12 Score=102.85 Aligned_cols=67 Identities=15% Similarity=0.358 Sum_probs=60.1
Q ss_pred CCCcccCccchhhccCcccC-CCCccccHHHHHHHHHcCCCCCCCCcccccCC----CCcchHHHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT----ILTPNHLIREMISQWC 147 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~----~l~~n~~lk~~i~~~~ 147 (464)
+++++.||||.++|.|||++ +|||+||+.||.+|+.. ...||.|+.++... .+.+|..+++.++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 45689999999999999997 99999999999999987 58899999998765 6889999999998773
No 57
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.21 E-value=6.6e-12 Score=100.83 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=60.8
Q ss_pred CCcccCccchhhccCccc-CCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHH
Q 012404 81 PEEFKCPLSKELMRDPVI-LASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRS 149 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv~-~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~ 149 (464)
.+++.||||.+.|.+||+ ++|||+||+.||.+|+.....+||.||.++...++.+|..+...++...+.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 348999999999999999 999999999999999998547899999999999999998888777765443
No 58
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.21 E-value=5.5e-12 Score=104.61 Aligned_cols=69 Identities=19% Similarity=0.456 Sum_probs=62.7
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHH
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQW 146 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~ 146 (464)
..++++|.||||+++|.+||+++|||+|++.||.+|+..+..+||.||.++...++.++..+++.|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 357889999999999999999999999999999999987555999999999998899999999888764
No 59
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.19 E-value=5.7e-13 Score=102.22 Aligned_cols=64 Identities=27% Similarity=0.449 Sum_probs=55.8
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcC------CCCCCCCcccccCCCCcchHHHHH
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG------NRTCPRTQQVLSHTILTPNHLIRE 141 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~------~~~~P~~~~~l~~~~l~~n~~lk~ 141 (464)
..+.+++.||||.+.|.+|+++||||+|++.||.+|+... ...||+||+++...++.+|..+++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 3467899999999999999999999999999999999863 568999999998888888865543
No 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.7e-11 Score=93.28 Aligned_cols=64 Identities=16% Similarity=0.306 Sum_probs=55.1
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHH
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMI 143 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i 143 (464)
.+..+++.||||.+.|.+||++||||+|++.||.+|+.. ..+||+||+++. ..+.+|..+.+.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHH
Confidence 445678999999999999999999999999999999987 678999999986 6777886555444
No 61
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2e-11 Score=90.07 Aligned_cols=56 Identities=14% Similarity=0.349 Sum_probs=49.7
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCC
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTIL 133 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l 133 (464)
..+++++.||||.+.+.+|++++|||+|++.+|.+|+..+..+||.+|+++...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 45678999999999999999999999999999999997556789999999876543
No 62
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=3.3e-12 Score=99.29 Aligned_cols=64 Identities=25% Similarity=0.443 Sum_probs=56.1
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcC-----CCCCCCCcccccCCCCcchHHHHH
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG-----NRTCPRTQQVLSHTILTPNHLIRE 141 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~-----~~~~P~~~~~l~~~~l~~n~~lk~ 141 (464)
..+.+++.||||.+.+.+|+++||||+|++.||.+|+... ...||.||+++...++.+|..+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 4477899999999999999999999999999999999862 568999999999888888865543
No 63
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=1.9e-11 Score=92.43 Aligned_cols=61 Identities=26% Similarity=0.476 Sum_probs=51.2
Q ss_pred cCCCCCCcccCccchhhccCcccCC-CCccccHHHHHHHHHcC-CCCCCCCccccc-CCCCcch
Q 012404 76 ETVSCPEEFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG-NRTCPRTQQVLS-HTILTPN 136 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~-~~~l~~n 136 (464)
+..++++++.||||.+.|.|||++| |||+|++.||.+|+... ...||.||+++. .+.+.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 4456788999999999999999999 99999999999999863 368999999853 4455554
No 64
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.2e-11 Score=90.59 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=53.0
Q ss_pred cCCCCCCcccCccchhhccCcccC-CCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcch
Q 012404 76 ETVSCPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 136 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 136 (464)
+..++.+++.||||.+.|.||+++ +|||+|++.+|.+|+.. ...||++|+++...++.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 344577899999999999999987 99999999999999987 6799999999988777665
No 65
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=5.3e-12 Score=104.19 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=61.0
Q ss_pred CCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccC-------CCCcchHHHHHHHHHHH
Q 012404 79 SCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH-------TILTPNHLIREMISQWC 147 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~-------~~l~~n~~lk~~i~~~~ 147 (464)
...++|.||||.+.|.+||++||||+||+.||.+|+..+...||+||.++.. ..+.+|..+...|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3455899999999999999999999999999999998767789999999864 56778999999998885
No 66
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=9.3e-12 Score=103.04 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=61.1
Q ss_pred CCcccCccchhhccCcccC-CCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHHHHHc
Q 012404 81 PEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQWCRSQ 150 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~~~~ 150 (464)
.+++.||||.++|.+||++ +|||+||+.||.+|+. ..||.||.++...++.+|..++..++.|....
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 4489999999999999999 9999999999999987 67999999998889999999999999886543
No 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.15 E-value=1.4e-11 Score=108.56 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=61.4
Q ss_pred CCCcccCccchhhccCcccC-CCCccccHHHHHHHHHcCCCCCCCCccccc-CCCCcchHHHHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAGNRTCPRTQQVLS-HTILTPNHLIREMISQWCR 148 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~-~~~l~~n~~lk~~i~~~~~ 148 (464)
+.+++.||||.+.|.+||++ ||||+||+.||.+|+..+...||.||.++. ...+.+|..+++.|..|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45678999999999999987 999999999999999976788999999985 4679999999999998844
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.14 E-value=2.3e-09 Score=102.09 Aligned_cols=195 Identities=12% Similarity=0.031 Sum_probs=126.3
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
...++.|+..|.++ ...+..|+..|..+.. .++++.|+.+|. +.++.++..|+.+|..+..
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~------d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCS------DKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHT------CSSHHHHHHHHHHHHHSCC
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHc------CCCHHHHHHHHHHHHHhcc
Confidence 44678888888654 6677788888877652 357788888887 5577888888888877753
Q ss_pred CcchHHHHhcCCCChHHHH-HHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHH
Q 012404 250 HDNNKKLVAETPMVIPLLM-DALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIF 328 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv-~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~ 328 (464)
.+.... ..++.|. .++++.++.+|..++.+|..+...... ....+++.|+.+|.++++.++..|+.+|.
T Consensus 84 ~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 84 CKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp CTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 322111 1233333 234567888888888888887643211 12245777888888778888888888887
Q ss_pred HhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHH
Q 012404 329 NLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIA 406 (464)
Q Consensus 329 ~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~ 406 (464)
++.. .++++.|++++.++ .++..|+.+|..+.... ..+++.|+.++.+. ++.++..|+.
T Consensus 154 ~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~-~~~vR~~A~~ 214 (280)
T 1oyz_A 154 VIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK-NEEVRIEAII 214 (280)
T ss_dssp TC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred hcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 7643 24778888887765 56777777777764221 12345566666543 3666677777
Q ss_pred HHHHHh
Q 012404 407 ILHTIC 412 (464)
Q Consensus 407 ~L~~L~ 412 (464)
+|..+.
T Consensus 215 aL~~~~ 220 (280)
T 1oyz_A 215 GLSYRK 220 (280)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 666654
No 69
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.7e-12 Score=98.41 Aligned_cols=64 Identities=27% Similarity=0.541 Sum_probs=56.1
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHc-----CCCCCCCCcccccCCCCcchHHHHH
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA-----GNRTCPRTQQVLSHTILTPNHLIRE 141 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~-----~~~~~P~~~~~l~~~~l~~n~~lk~ 141 (464)
..+.+++.||||.+.+.+|+++||||+|++.||.+|+.. +...||+||+++...++.+|..+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 457789999999999999999999999999999999976 3578999999999888888865543
No 70
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.13 E-value=3.5e-09 Score=95.65 Aligned_cols=184 Identities=19% Similarity=0.200 Sum_probs=152.0
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
.+..+.++..|+ +.++.++..|+.+|..+.. ...++.|+.+|.++++.+|..++.+|..+.
T Consensus 13 ~~~~~~~i~~L~------~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQ------DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-- 73 (201)
T ss_dssp HHHHHHHHHHTT------CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--
T ss_pred CcchHHHHHHhc------CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--
Confidence 467788999998 6689999999999986542 247899999999999999999999998764
Q ss_pred CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012404 293 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLS 370 (464)
Q Consensus 293 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 370 (464)
..++++.|+.+|.++++.++..|+.+|..+.. ..+++.|+++|.++ .++..|+.+|..+.
T Consensus 74 --------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 74 --------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp --------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 24678999999999999999999999998743 35789999999866 57888999998875
Q ss_pred CCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHH
Q 012404 371 TNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGI 450 (464)
Q Consensus 371 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~ 450 (464)
. .+.++.|+.++.+. ++.++..|+.+|..+.. ...++.|..+++++++.++..|...
T Consensus 136 ~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~a 192 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNY 192 (201)
T ss_dssp C----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2 45788999999865 48999999999998732 2356778888899999999999999
Q ss_pred HHHHhc
Q 012404 451 LERLKR 456 (464)
Q Consensus 451 L~~l~~ 456 (464)
|..+..
T Consensus 193 L~~l~~ 198 (201)
T 3ltj_A 193 LETHKS 198 (201)
T ss_dssp HHHCC-
T ss_pred HHHHHh
Confidence 998754
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.11 E-value=3.8e-09 Score=96.19 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=147.9
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
...++.|++.|.+. ...+..|+..|..+.. .++++.|+.+|. +.++.++..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~------~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK------DEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT------CSCHHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHc------CCCHHHHHHHHHHHHhhCC
Confidence 56788999999754 6778888888776543 468899999998 5678999999999987642
Q ss_pred CcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 250 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
...++.|+.+|.++++.+|..++.+|..+.. .++++.|+.+|.++++.++..|+.+|..
T Consensus 80 -----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 80 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGE 138 (211)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2478999999999999999999999988742 4678999999999999999999999998
Q ss_pred hccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHH
Q 012404 330 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 407 (464)
Q Consensus 330 L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~ 407 (464)
+.. ..+++.|++++.++ .++..|+.+|..+.. ..+++.|..++++. ++.++..|..+
T Consensus 139 ~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~a 197 (211)
T 3ltm_A 139 IGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNY 197 (211)
T ss_dssp HCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred cCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 842 35789999999865 678889999998843 34577888888865 49999999999
Q ss_pred HHHHhccChh
Q 012404 408 LHTICLSDRT 417 (464)
Q Consensus 408 L~~L~~~~~~ 417 (464)
|..+......
T Consensus 198 L~~~~~~~~~ 207 (211)
T 3ltm_A 198 LETHKSFNHH 207 (211)
T ss_dssp HHC-------
T ss_pred HHhcCCCCCC
Confidence 9998876543
No 72
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=2.5e-11 Score=103.53 Aligned_cols=62 Identities=19% Similarity=0.445 Sum_probs=50.1
Q ss_pred CcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHHH
Q 012404 82 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQW 146 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~~ 146 (464)
+++.||||.+.|.|||++||||+||+.||.+|+.. ..+||+||.++.... ++..+...|..+
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~--~~~~~~~~i~~~ 113 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT--YSLVLDNCINKM 113 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE--ECHHHHHHHHHH
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC--CccchhHHHHHH
Confidence 47899999999999999999999999999999987 678999999886432 334444444443
No 73
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=2.5e-11 Score=99.60 Aligned_cols=66 Identities=17% Similarity=0.413 Sum_probs=57.2
Q ss_pred CcccCccchhhccCcccCCCCccccHHHHHHHHHcC--CCCCCCCcccccCCCCcchHHHHHHHHHHH
Q 012404 82 EEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG--NRTCPRTQQVLSHTILTPNHLIREMISQWC 147 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~--~~~~P~~~~~l~~~~l~~n~~lk~~i~~~~ 147 (464)
+++.||||.+.+.+|+++||||+||+.||.+|+... ...||.||.++...++.+|..+...++.+.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 478899999999999999999999999999999863 258999999999888888876666666654
No 74
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=1.1e-10 Score=85.77 Aligned_cols=55 Identities=20% Similarity=0.437 Sum_probs=49.1
Q ss_pred CcccCccchh-hccCc----ccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcch
Q 012404 82 EEFKCPLSKE-LMRDP----VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 136 (464)
Q Consensus 82 ~~f~CPi~~~-~m~dP----v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 136 (464)
+++.|||+.+ .+.+| ++++|||+|++.+|.+|+..+...||.+|.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 4689999999999999998766789999999988877664
No 75
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.06 E-value=6.7e-11 Score=104.63 Aligned_cols=68 Identities=19% Similarity=0.467 Sum_probs=62.0
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcchHHHHHHHHH
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPNHLIREMISQ 145 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n~~lk~~i~~ 145 (464)
..++++|.||||.++|.+||.++|||+|++.+|.+|+..+..+||.+|.+++..++.++..+++.|..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 35888999999999999999999999999999999998755699999999999889999988888865
No 76
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=87.63 Aligned_cols=56 Identities=21% Similarity=0.456 Sum_probs=49.2
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHc--CCCCCCCCcccccCCCC
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA--GNRTCPRTQQVLSHTIL 133 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~--~~~~~P~~~~~l~~~~l 133 (464)
..+.+++.||||.+.+.+|++++|||+|++.||.+|+.. +...||++|+++...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 457889999999999999999999999999999999973 45689999999876553
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.05 E-value=1.1e-08 Score=92.24 Aligned_cols=182 Identities=16% Similarity=0.137 Sum_probs=148.1
Q ss_pred hhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
.+..+.+++.|.+. ...+..|+..|..+.. .+.++.|+.+|. +.++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~------~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK------DEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT------CSSHHHHHHHHHHHHHHCC
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHc------CCCHHHHHHHHHHHHhhCC
Confidence 56778999999764 7778888888876543 367889999998 5678999999999977632
Q ss_pred CcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHH
Q 012404 250 HDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFN 329 (464)
Q Consensus 250 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~ 329 (464)
...++.|+.+|.+.++.+|..++.+|..+.. ..+++.|+.+|.++++.++..|+.+|..
T Consensus 75 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 75 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2478999999999999999999999988642 4578999999999999999999999998
Q ss_pred hccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHH
Q 012404 330 LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 407 (464)
Q Consensus 330 L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~ 407 (464)
+.. ..+++.|++++.++ .++..|+.+|..+.. ..+++.|..++.+. ++.++..|..+
T Consensus 134 ~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~a 192 (201)
T 3ltj_A 134 IGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNY 192 (201)
T ss_dssp HTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred hCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 842 45889999999876 678889999998832 23577888888765 48999999999
Q ss_pred HHHHh
Q 012404 408 LHTIC 412 (464)
Q Consensus 408 L~~L~ 412 (464)
|..+.
T Consensus 193 L~~l~ 197 (201)
T 3ltj_A 193 LETHK 197 (201)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 98764
No 78
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=1.6e-10 Score=95.45 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=55.5
Q ss_pred CCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCc-chHHHHHHHHH
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILT-PNHLIREMISQ 145 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~-~n~~lk~~i~~ 145 (464)
++++|.||||.++|.|||+++|||+|++.+|.+|+.....+||.+|.++...++. ++..+.+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4557999999999999999999999999999999987567899999999877765 45556665543
No 79
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.01 E-value=5.6e-11 Score=101.40 Aligned_cols=67 Identities=13% Similarity=0.313 Sum_probs=56.3
Q ss_pred CCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCccccc---------CCCCcchHHHHHHHHH
Q 012404 79 SCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS---------HTILTPNHLIREMISQ 145 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~---------~~~l~~n~~lk~~i~~ 145 (464)
.+.++|.||||.++|.+||.++|||+||+.||.+|+..+..+||.||.++. ...+.++..+++.|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 467899999999999999999999999999999999876568999998753 2345577777777753
No 80
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.97 E-value=2.3e-09 Score=115.41 Aligned_cols=191 Identities=14% Similarity=0.161 Sum_probs=149.7
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHH-HhcccCCHHHHHHHHHHHHHhccCc--hhhhH
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLI-DLLDEGHQSAMKDVASAIFNLCITH--ENKAR 339 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~al~aL~~L~~~~--~~~~~ 339 (464)
++| +++.|+++++..|..|+++|.+|+.+...+..+...|+|..++ .+|.+.+.+++..|+++|.||+... +.+..
T Consensus 36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 556 6778999999999999999999998778888888888887754 5788889999999999999999753 68888
Q ss_pred HHhcCcHHHHHHHHcCC-----------------------chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhcc
Q 012404 340 AVRDGGVSVILKKIMDG-----------------------VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRES 395 (464)
Q Consensus 340 iv~~g~v~~Lv~lL~~~-----------------------~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~ 395 (464)
+++.|++++|..++... .+.+.++.+|++||.+ .+....+...|+++.|+..+...
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 99999999999987420 2345688899999975 56777888889999999887542
Q ss_pred --CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh--hcCCHHHHHHHHHHHHHHh
Q 012404 396 --TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA--QDGTARAKRKATGILERLK 455 (464)
Q Consensus 396 --~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll--~~g~~~~k~~A~~~L~~l~ 455 (464)
.+..++..|+.+|+.|+..++...+.+.. .+....+..++ ..++...+.-++++|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 23678999999999999999876666654 45433333332 3344456778899999975
No 81
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.97 E-value=2.4e-10 Score=85.40 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=51.0
Q ss_pred CCCCcccCccchhhccCc-------ccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcch
Q 012404 79 SCPEEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 136 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 136 (464)
...+++.||||.+.+.+| ++++|||+|++.+|.+|+.. ..+||++|.++...++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 345689999999999999 89999999999999999987 5799999999988877765
No 82
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=4.5e-10 Score=81.84 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=41.8
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHc--CCCCCCCC
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA--GNRTCPRT 124 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~--~~~~~P~~ 124 (464)
..+.+++.|||+.+.+.+||++||||+|++.+|.+|+.. +...||++
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 357789999999999999999999999999999999985 35689975
No 83
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.96 E-value=2.1e-08 Score=95.44 Aligned_cols=196 Identities=9% Similarity=0.024 Sum_probs=147.2
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
.+.++.|+..|. +.++.++..|+.+|.++.. ..+++.|+.+|+++++.+|..|+.+|..+...
T Consensus 22 ~~~i~~L~~~L~------~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~ 84 (280)
T 1oyz_A 22 KLNDDELFRLLD------DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 84 (280)
T ss_dssp TSCHHHHHHHTT------CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred HhhHHHHHHHHH------cCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 578999999998 5678999999999988751 24688899999999999999999999888643
Q ss_pred CcchhhhcccCchHHHHH-hcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHh
Q 012404 293 DSNKEVIGKSGALKPLID-LLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAML 369 (464)
Q Consensus 293 ~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L 369 (464)
..... .+++.|.. ++.++++.++..++.+|..+...... ....+++.|+.++.++ .++..|+.+|.++
T Consensus 85 ~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 85 KKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp TTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred cccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 22111 12334442 34567899999999999998643211 1224688999999876 5778889888876
Q ss_pred hCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHH
Q 012404 370 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 449 (464)
Q Consensus 370 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~ 449 (464)
.. .++++.|+.++.+. ++.++..|+++|..+....+ ..++.|..+++++++.++..|..
T Consensus 156 ~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~----------~~~~~L~~~l~d~~~~vR~~A~~ 214 (280)
T 1oyz_A 156 ND----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNS----------DIRDCFVEMLQDKNEEVRIEAII 214 (280)
T ss_dssp -------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCH----------HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcH----------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 53 35799999999865 48899999999998854322 34567778888888888888888
Q ss_pred HHHHHh
Q 012404 450 ILERLK 455 (464)
Q Consensus 450 ~L~~l~ 455 (464)
.|..+.
T Consensus 215 aL~~~~ 220 (280)
T 1oyz_A 215 GLSYRK 220 (280)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 888775
No 84
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.94 E-value=1.7e-08 Score=111.49 Aligned_cols=273 Identities=14% Similarity=0.085 Sum_probs=188.8
Q ss_pred hhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhh--hhh-cCCchhhhhhhcccccccCCCChhhHHHHHHHHHcc
Q 012404 172 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRAL--FGE-SHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 247 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~--i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 247 (464)
+.++.|++.+.+. ...+..++..|..++...+..-.. +.. ..+.++.|+..++ +.++.++..|+.+|.++
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~------~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK------HSSPKIRSHAVACVNQF 201 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTT------CSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHH
Confidence 3577888888654 567788888998888754332110 000 0246677777777 55789999999999887
Q ss_pred ccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 248 SIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 248 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
........ ...-..+++.+..++.++++++|..++.+|..|+........-.-.++++.++.++.+.++.++..|+..+
T Consensus 202 ~~~~~~~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 202 IISRTQAL-MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFW 280 (852)
T ss_dssp TTTTCHHH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HhcccHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 65433211 11111367888888889999999999999999987542211111125788888888888899999999999
Q ss_pred HHhccCchhhhHHHh--cCcHHHHHHHH-----------cC-----------C--chHHHHHHHHHHhhCCHHHHHHHHh
Q 012404 328 FNLCITHENKARAVR--DGGVSVILKKI-----------MD-----------G--VHVDELLAILAMLSTNHRAVEEIGD 381 (464)
Q Consensus 328 ~~L~~~~~~~~~iv~--~g~v~~Lv~lL-----------~~-----------~--~~~~~a~~~L~~L~~~~~~~~~i~~ 381 (464)
..++.....+..+.. ...+|.++..+ .+ . .++..|..+|..|+.... ..+..
T Consensus 281 ~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~ 358 (852)
T 4fdd_A 281 LTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP 358 (852)
T ss_dssp HHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH
Confidence 999876543332211 24677787777 22 1 346778888888885421 11111
Q ss_pred cCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 382 LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 382 ~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
..++.+...+.+. +...++.|+.+|..++..........+ ..+++.|..++.+.++.++..|+++|.+++..
T Consensus 359 -~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 359 -HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp -HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred -HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 2466677777755 589999999999999987765433333 46788999999999999999999999998864
No 85
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.4e-10 Score=85.52 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=46.6
Q ss_pred CCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 79 SCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
...+++.||||++.+.+||++||||+|++.+|.+|+.. ..+||++|+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 35668999999999999999999999999999999987 57999999988654
No 86
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=84.81 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=48.8
Q ss_pred cCCCCCCcccCccchhhccC----cccCCCCccccHHHHHHHHHcC--CCCCCCCcccccCC
Q 012404 76 ETVSCPEEFKCPLSKELMRD----PVILASGQTFDRPYIQRWLKAG--NRTCPRTQQVLSHT 131 (464)
Q Consensus 76 ~~~~~p~~f~CPi~~~~m~d----Pv~~~~g~~~~r~~I~~~~~~~--~~~~P~~~~~l~~~ 131 (464)
+...+.+++.||||.+.|.+ |+++||||+|++.||.+|+... ...||+||+++...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 33457788999999999999 9999999999999999999873 46899999988654
No 87
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.90 E-value=1e-08 Score=113.21 Aligned_cols=270 Identities=10% Similarity=0.034 Sum_probs=182.1
Q ss_pred hhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 172 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
..++.+++.++++ ...+..|+.+|..+....+..-.... .+.++.|+.++. +++++++..|+.+|..++..
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~------d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALAG------DEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHHT------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHh
Confidence 3456666666543 67788899998877753322111111 256777777776 56789999999999998765
Q ss_pred cchHH-HHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcc--cCchHHHHHhc-----------cc--
Q 012404 251 DNNKK-LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLL-----------DE-- 314 (464)
Q Consensus 251 ~~~~~-~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL-----------~~-- 314 (464)
..... .... ++++.++.++++.+..++..|+.++..++.....+..+.. ...++.|+..+ .+
T Consensus 246 ~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ 323 (852)
T 4fdd_A 246 RMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323 (852)
T ss_dssp CHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred CHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence 43211 1111 3678888888888999999999999999875433332221 24567777776 22
Q ss_pred ---------CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcC
Q 012404 315 ---------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLG 383 (464)
Q Consensus 315 ---------~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g 383 (464)
.+-.++..|..+|..|+.... ..++ ..++|.+.+++.+. ..++.|+.+|.+++......-.-.-.+
T Consensus 324 ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 324 GGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 112357888889988875432 1222 24677777778765 678889999999998743211112235
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhH-HHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW-KAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
.++.|+..+.+. ++.++..|+++|.+++...+... .... ...++.|.+.++++++.+++.|.++|.++.+.
T Consensus 401 ~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 401 LIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 688888888765 59999999999999987533211 1122 36777888888888999999999999998754
No 88
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.86 E-value=5.8e-10 Score=81.42 Aligned_cols=54 Identities=22% Similarity=0.431 Sum_probs=48.4
Q ss_pred CcccCccchhhccCc-------ccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcch
Q 012404 82 EEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 136 (464)
Q Consensus 82 ~~f~CPi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 136 (464)
+++.|||+.+.+.+| ++++|||+|++.+|.+|+.. ..+||++|+++...++.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 478999999999998 78999999999999999987 6799999999988776654
No 89
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2e-09 Score=76.85 Aligned_cols=47 Identities=28% Similarity=0.643 Sum_probs=41.4
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHc--CCCCCCCC
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA--GNRTCPRT 124 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~--~~~~~P~~ 124 (464)
..+.+++.|||+.+.+.+|++++|||+|++.+|.+|+.. +..+||++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456778999999999999999999999999999999764 46789975
No 90
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.83 E-value=7.3e-09 Score=111.49 Aligned_cols=191 Identities=15% Similarity=0.168 Sum_probs=145.5
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD- 293 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~- 293 (464)
.|.+++..|+ +.+++.+..|+.+|.+|+.+...+..+...+++.+.+..+|.+.+.++|..|+++|.||+...
T Consensus 35 ~i~Pll~~L~------S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVLKDLK------SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHHHHHS------SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHcC------CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 4555667787 567899999999999999888888888877654555667788889999999999999999764
Q ss_pred -cchhhhcccCchHHHHHhcccC--------------C-------HHHHHHHHHHHHHhccCc-hhhhHHHhcCcHHHHH
Q 012404 294 -SNKEVIGKSGALKPLIDLLDEG--------------H-------QSAMKDVASAIFNLCITH-ENKARAVRDGGVSVIL 350 (464)
Q Consensus 294 -~~~~~i~~~g~i~~Lv~lL~~~--------------~-------~~~~~~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv 350 (464)
+.+..+.+.|++++|..+|... . ..+..+++.+|++||... +....+...|+++.|+
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence 5677888999999999988531 0 124456888999999755 4555677889999999
Q ss_pred HHHcCC-----chHHHHHHHHHHhhCC-HHHHHHHHhcCcH---HHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 351 KKIMDG-----VHVDELLAILAMLSTN-HRAVEEIGDLGGV---SCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 351 ~lL~~~-----~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
..|.+. .+...|+.+|..|+.+ ++....+.+.|.. ..+..+.. +. ...+..++++|+|+..
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~-~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GT-DPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SS-CTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CC-cHHHHHHHHHHHhHhh
Confidence 988531 5788899999999996 5666777776642 33333333 32 5567789999999853
No 91
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2e-09 Score=79.79 Aligned_cols=52 Identities=21% Similarity=0.433 Sum_probs=46.6
Q ss_pred CCCCCcccCccchhhccCc-------ccCCCCccccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 78 VSCPEEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
...++++.||||++.+.+| ++++|||+|++.+|.+|+.. ..+||++|+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3467789999999999998 88999999999999999987 6799999998764
No 92
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.79 E-value=5.2e-09 Score=79.43 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=46.8
Q ss_pred CCCCcccCccchhhc--cCcccCC--CCccccHHHHHHHHHcCCCCCCCCcccccCCCC
Q 012404 79 SCPEEFKCPLSKELM--RDPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTIL 133 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m--~dPv~~~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l 133 (464)
...+++.||||.+.+ .|+++.| |||+|++.||.+|+..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 356789999999998 5677777 999999999999997667889999999876544
No 93
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.73 E-value=5.4e-09 Score=79.56 Aligned_cols=57 Identities=23% Similarity=0.424 Sum_probs=48.7
Q ss_pred CCCCcccCccchhhccCcc---cCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcch
Q 012404 79 SCPEEFKCPLSKELMRDPV---ILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 136 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~dPv---~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 136 (464)
...+++.||||++.|.+|. ++||||.|++.||.+|+.. ..+||+||.++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 4566899999999998874 4699999999999999986 5799999999987776654
No 94
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.72 E-value=1.6e-07 Score=95.31 Aligned_cols=273 Identities=12% Similarity=0.128 Sum_probs=181.1
Q ss_pred hhHHHHHHhhcC---CchhHHHHHHHHHHHhhcC-chhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcc
Q 012404 172 DHFLSLLKKMSA---TLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNL 247 (464)
Q Consensus 172 ~~i~~Lv~~Ls~---~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 247 (464)
+.++.|++.+.+ +...+..|+..|..++.+. +..-..... ..++.++..|... ..++.++..|+.++.++
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~----~~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKE----EPSNNVKLAATNALLNS 201 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTT----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCC----CCCHHHHHHHHHHHHHH
Confidence 457788888854 4567788999999998753 221111222 4667777777732 11678999999999886
Q ss_pred ccCcc-hH-HHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcc--hhhhcccCchHHHHHhcccCCHHHHHHH
Q 012404 248 SIHDN-NK-KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSAMKDV 323 (464)
Q Consensus 248 s~~~~-~~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 323 (464)
...-. +- ..... ..+++.+...+.+++.+++..++.+|..+...... ...+. .++++.++..+.+.++.++..|
T Consensus 202 ~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a 279 (462)
T 1ibr_B 202 LEFTKANFDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQG 279 (462)
T ss_dssp TTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHhhhhhHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHH
Confidence 43211 10 00000 11356666667777899999999999998864321 12221 1677888888888889999999
Q ss_pred HHHHHHhccCch------------------hhhHHHh---cCcHHHHHHHHcCC---------chHHHHHHHHHHhhCCH
Q 012404 324 ASAIFNLCITHE------------------NKARAVR---DGGVSVILKKIMDG---------VHVDELLAILAMLSTNH 373 (464)
Q Consensus 324 l~aL~~L~~~~~------------------~~~~iv~---~g~v~~Lv~lL~~~---------~~~~~a~~~L~~L~~~~ 373 (464)
+..+..++.... ....+++ ...+|.+++.|.+. ..+..|+.+|..|+..-
T Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~ 359 (462)
T 1ibr_B 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence 999998876431 0111221 24567777777421 56788889998888642
Q ss_pred HHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh-hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012404 374 RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 452 (464)
Q Consensus 374 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~ 452 (464)
. +.+.. ..++.+...+.+. +...++.|+.+|..++.... ......+ ..+++.|..++.+..+.++..|+++|.
T Consensus 360 ~--~~~~~-~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 433 (462)
T 1ibr_B 360 E--DDIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVG 433 (462)
T ss_dssp T--TTHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred c--HHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 12221 3456666777654 48999999999999997543 2212222 468889999999999999999999999
Q ss_pred HHhccc
Q 012404 453 RLKRTV 458 (464)
Q Consensus 453 ~l~~~~ 458 (464)
++...-
T Consensus 434 ~~~~~~ 439 (462)
T 1ibr_B 434 RICELL 439 (462)
T ss_dssp HHHHHG
T ss_pred HHHHhc
Confidence 998753
No 95
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.63 E-value=5.7e-07 Score=95.08 Aligned_cols=255 Identities=13% Similarity=0.157 Sum_probs=174.5
Q ss_pred hHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
.+..+++.++++ ...+.-+...+..+++.+++.. .-+++.|..-|+ +.++.++..|+.+|.++...+
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~------~l~~n~l~kdL~------~~n~~ir~~AL~~L~~i~~~~ 117 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA------IMAVNSFVKDCE------DPNPLIRALAVRTMGCIRVDK 117 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH------HTTHHHHGGGSS------SSSHHHHHHHHHHHHTCCSGG
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH------HHHHHHHHHHcC------CCCHHHHHHHHHHHHcCChHH
Confidence 456677777654 5566666667777776443332 124556666666 668899999999998885222
Q ss_pred chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 252 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 252 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
+.. .++|.+..+|.+.++.+|+.|+.++..+..... ..+...++++.|..+|.+.++.++..|+.+|..++
T Consensus 118 -----~~~--~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 118 -----ITE--YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp -----GHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred -----HHH--HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 221 256778899999999999999999999987432 23334578999999999889999999999999998
Q ss_pred cCchhh-hHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHH
Q 012404 332 ITHENK-ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAI 407 (464)
Q Consensus 332 ~~~~~~-~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~ 407 (464)
...... ..-...+.++.|+..+.+. -.+-..+.+|..++..++ .. ...++.+..++++. ++.+...|+++
T Consensus 189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~-~~~V~~ea~~~ 262 (591)
T 2vgl_B 189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHA-NSAVVLSAVKV 262 (591)
T ss_dssp TSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSS-TTHHHHHHHHH
T ss_pred hhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 765422 1112234566777776543 345567777777775422 21 13456666777755 48899999999
Q ss_pred HHHHhcc---ChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 408 LHTICLS---DRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 408 L~~L~~~---~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
+..+... +++..+.+. ..+.+.|+.++. +++.+|..|...|..+...
T Consensus 263 i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 9998742 334334443 356677777664 6778888888888877653
No 96
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.62 E-value=1e-08 Score=86.33 Aligned_cols=55 Identities=22% Similarity=0.432 Sum_probs=49.0
Q ss_pred CCcccCccchhhccCc-------ccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcch
Q 012404 81 PEEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 136 (464)
Q Consensus 81 p~~f~CPi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 136 (464)
++++.|||+.+.|.+| ++++|||+|++.+|.+|+.. ..+||++|+++....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5789999999999999 99999999999999999987 5799999999887765543
No 97
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.61 E-value=1.8e-08 Score=74.33 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=42.9
Q ss_pred CcccCccchhhccCc-ccCCCCccccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 82 EEFKCPLSKELMRDP-VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 82 ~~f~CPi~~~~m~dP-v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
++..||||.+.+.+| +++||||+|++.+|.+|+.. ..+||.+|.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999997 78999999999999999987 5799999998753
No 98
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.60 E-value=6.3e-07 Score=93.82 Aligned_cols=248 Identities=14% Similarity=0.070 Sum_probs=169.7
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCCh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 264 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i 264 (464)
...+..++..|..++..... ... . ...++.+..+++ +.+++++..++.+|..+...-... .+. ..++
T Consensus 338 ~~vR~~a~~~l~~l~~~~~~--~~~-~-~~l~p~l~~~l~------d~~~~Vr~~a~~~l~~l~~~~~~~-~~~--~~~l 404 (588)
T 1b3u_A 338 QHVKSALASVIMGLSPILGK--DNT-I-EHLLPLFLAQLK------DECPEVRLNIISNLDCVNEVIGIR-QLS--QSLL 404 (588)
T ss_dssp HHHHHHHHTTGGGGHHHHCH--HHH-H-HHTHHHHHHHHT------CSCHHHHHHHHTTCHHHHHHSCHH-HHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhH--hHH-H-HHHHHHHHHHhC------CCchHHHHHHHHHHHHHHHhcCHH-HHH--HHHH
Confidence 44555555555555542111 111 1 246677788887 556889988888777664322111 111 1378
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcC
Q 012404 265 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDG 344 (464)
Q Consensus 265 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g 344 (464)
|.|..++++.+..+|..++.+|..++..-.. .+.....++.++.+|.+.+..+++.|+.+|..++..-... .....
T Consensus 405 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~ 480 (588)
T 1b3u_A 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHAT 480 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHH
Confidence 8899999888999999999999988753111 1223356888999998888999999999999987643221 12335
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHH
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAM 422 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 422 (464)
.+|.|++++.++ .++..++.++..++..-.. .......++.|+.++... .+.++..++++|..++..-... .
T Consensus 481 llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~---~ 554 (588)
T 1b3u_A 481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNS---T 554 (588)
T ss_dssp THHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHH---H
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchh---h
Confidence 788888877655 5677889999888764211 112234678888888755 4899999999999999765432 2
Q ss_pred HHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 423 REEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 423 ~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
. ...+.+.|.+++.+.+..++..|..+|..+.+
T Consensus 555 ~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 555 L-QSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp H-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred h-HHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 2 24677888888888899999999999988754
No 99
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.58 E-value=2.4e-08 Score=70.29 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=42.1
Q ss_pred CcccCccchhhccC----cccCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 82 EEFKCPLSKELMRD----PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 82 ~~f~CPi~~~~m~d----Pv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
+++.|||+++.+.+ |+++||||.|++.+|.+|+.. ..+||++|++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 46889999999977 788999999999999999998 489999998764
No 100
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.58 E-value=4.8e-08 Score=72.30 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=44.6
Q ss_pred CCCCCcccCccchhhcc---CcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 78 VSCPEEFKCPLSKELMR---DPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~---dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
.+..++..||||++.+. +++.+||||.|++.+|.+|+.. ..+||++|.++...
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 34566889999999884 4678999999999999999997 56899999987653
No 101
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.58 E-value=2e-06 Score=90.01 Aligned_cols=260 Identities=11% Similarity=0.045 Sum_probs=174.5
Q ss_pred HHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 174 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 174 i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
++.|...+.+ +...+..|+..|..++...+.. .+.. ..++.+..+.+ +.+...+..|+.++..+...-.
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~--~l~~~l~~l~~------~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEA--HFVPLVKRLAG------GDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHH--THHHHHHHHHT------CSSHHHHHHHGGGHHHHTTTSC
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHH--HHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhcC
Confidence 4444444443 3677888999999988754332 1222 34555555555 4467888888888887765433
Q ss_pred hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhcc
Q 012404 253 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 253 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 332 (464)
.. +. ..++|.+..++.+.++.+|..++.+|..++..-... ......++.|..++.++++.++..|+.+|..++.
T Consensus 159 ~~--~~--~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 159 SA--VK--AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp HH--HH--HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred HH--HH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 21 11 136788888888999999999999999998653322 1134678889999988899999999999998875
Q ss_pred CchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHH
Q 012404 333 THENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 410 (464)
Q Consensus 333 ~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 410 (464)
.-... ......+|.+.+++.++ .++..|+.+|..++..... .......++.++.+++.. ++.++..|+.+|..
T Consensus 233 ~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~ 307 (588)
T 1b3u_A 233 LLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKE 307 (588)
T ss_dssp HSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred hCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 43211 12234788888888765 5788899999999863211 112334688888999854 48999999999999
Q ss_pred HhccChhhHHH-HHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 411 ICLSDRTKWKA-MREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 411 L~~~~~~~~~~-~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
++...+..... .. ...+++.+..++++.+..+++.+.+.|..+.
T Consensus 308 ~~~~~~~~~~~~~~-~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 308 FCENLSADCRENVI-MSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHTSCTTTHHHHH-HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HHHHhChhhhhhHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 98765422111 11 1355666666777767777777766665554
No 102
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1e-08 Score=76.25 Aligned_cols=53 Identities=21% Similarity=0.442 Sum_probs=47.0
Q ss_pred CCCCCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCC
Q 012404 78 VSCPEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 132 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 132 (464)
.+..+++.||||.+.+.+ +++||||+|++.+|.+|+.. ..+||++|+++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 456778999999999999 99999999999999999985 689999999887543
No 103
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=5.7e-08 Score=72.96 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=45.5
Q ss_pred CCCCCcccCccchhhccCcccC---CCCccccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 78 VSCPEEFKCPLSKELMRDPVIL---ASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv~~---~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
.+..++..||||++.+.+|..+ ||||.|++.||.+|+.. ..+||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 3467789999999999988765 99999999999999997 5699999998754
No 104
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1.1e-08 Score=72.41 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=41.1
Q ss_pred CCcccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 81 PEEFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
.+++.|||+.+.+.+|+++||||+|++.+|.+| ...||++|+++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 357899999999999999999999999999883 56799999987643
No 105
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.52 E-value=2e-06 Score=90.90 Aligned_cols=262 Identities=11% Similarity=0.052 Sum_probs=173.3
Q ss_pred hHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
.++.+.+.+.+ ++..|..|+.++..+...+++. +.+ .+.++.|..+|. +.++.++..|+.+|..+..++
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~-~~~~~~l~~lL~------d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VED-QGFLDSLRDLIA------DSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHH-HHHHHHHHHTTS------CSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---ccc-ccHHHHHHHHhC------CCChhHHHHHHHHHHHHHhhC
Confidence 45567777754 4788999999999998855542 233 478899999998 668999999999999988765
Q ss_pred chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhc
Q 012404 252 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC 331 (464)
Q Consensus 252 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~ 331 (464)
.....+.-....++.|+..+...++-.+.....+|..+...++.. ....++.+..+|++.++.++..|++++..+.
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 321000000123566777777888888888888777776433211 1346778888888888899999999999987
Q ss_pred cC---chhhhHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhhCC-------------------HHHHHHH-------Hh
Q 012404 332 IT---HENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTN-------------------HRAVEEI-------GD 381 (464)
Q Consensus 332 ~~---~~~~~~iv~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~-------------------~~~~~~i-------~~ 381 (464)
.. +......+-..+++.|+.++.++ +++..|+..|..++.. ...|... ..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 268 ELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp CSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC
Confidence 42 11122222234567777766533 6677777777777631 1122211 12
Q ss_pred cCcH----HHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 382 LGGV----SCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 382 ~g~i----~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
...+ +.|...+... +...+..+++++..++...+... ...++.|..++......+...+...++.+-
T Consensus 348 ~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 348 QANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSA------ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp SSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHH------HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 2223 3444555543 58899999999999998765331 356678888888877777777777777663
No 106
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.52 E-value=5e-08 Score=76.55 Aligned_cols=51 Identities=22% Similarity=0.503 Sum_probs=44.8
Q ss_pred CCCCcccCccchhhccC---cccCCCCccccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 79 SCPEEFKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
...++..||||++.|.+ ++.+||||.|++.||.+|+.. +.+||+||.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34568899999999988 888999999999999999986 6799999998754
No 107
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.49 E-value=4.9e-08 Score=68.69 Aligned_cols=48 Identities=21% Similarity=0.532 Sum_probs=42.4
Q ss_pred CCcccCccchhhccC---cccCC-CCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 81 PEEFKCPLSKELMRD---PVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 81 p~~f~CPi~~~~m~d---Pv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
.++..|||+.+.+.+ ++.+| |||.|.+.+|.+|+.. ..+||++|.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 457889999999988 78887 9999999999999987 679999998763
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=6e-08 Score=73.07 Aligned_cols=51 Identities=25% Similarity=0.467 Sum_probs=44.7
Q ss_pred CCCcccCccchhhccCc---ccCCCCccccHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 80 CPEEFKCPLSKELMRDP---VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dP---v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
..++..||||++.+.++ +.+||||.|++.||.+|+.. +.+||+||+++...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 34578899999999988 77899999999999999987 57999999987653
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.46 E-value=1.3e-07 Score=77.49 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=44.1
Q ss_pred CCCCCcccCccchhhccCcc------------------cCCCCccccHHHHHHHHHc----CCCCCCCCcccccC
Q 012404 78 VSCPEEFKCPLSKELMRDPV------------------ILASGQTFDRPYIQRWLKA----GNRTCPRTQQVLSH 130 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~dPv------------------~~~~g~~~~r~~I~~~~~~----~~~~~P~~~~~l~~ 130 (464)
...+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ...+||.||..+..
T Consensus 20 ~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred ccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34455679999999998886 7899999999999999963 35689999998754
No 110
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.43 E-value=3.8e-08 Score=73.96 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=40.3
Q ss_pred CcccCccchhhccCcccCCCCcc-ccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 82 EEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
+++.|||+++.+.|||++||||+ |++.++.+| ..||++|+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 36889999999999999999999 999999999 679999998764
No 111
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.43 E-value=1.6e-05 Score=84.49 Aligned_cols=253 Identities=15% Similarity=0.113 Sum_probs=155.9
Q ss_pred HHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 174 FLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 174 i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
....++.++++ .+.+.-+.-.+..++..+++... -++..|..-|+ +.++.++..|+.+|.++...
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~------l~in~l~kDL~------~~n~~vr~lAL~~L~~i~~~-- 137 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL------LMTNCIKNDLN------HSTQFVQGLALCTLGCMGSS-- 137 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHHS------CSSSHHHHHHHHHHHHHCCH--
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHhcC------CCCHhHHHHHHHHHHhcCCH--
Confidence 34455555443 44555555556666664433211 13445555555 56788888899999888632
Q ss_pred hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhcc
Q 012404 253 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 253 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 332 (464)
.+.. .+++.+..+|++.++.+|+.|+.++.++...... +. .+.++.|..+|.+.++.++..|+.+|..++.
T Consensus 138 ---~~~~--~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 138 ---EMCR--DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp ---HHHH--HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred ---HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 2332 3677888888888999999999999888764321 11 2677888888888888899999999999887
Q ss_pred CchhhhHHHhcCcHHHHHHHHcC----------------C-chHHHHHHHHHHhhCC-HHHHH-----------------
Q 012404 333 THENKARAVRDGGVSVILKKIMD----------------G-VHVDELLAILAMLSTN-HRAVE----------------- 377 (464)
Q Consensus 333 ~~~~~~~iv~~g~v~~Lv~lL~~----------------~-~~~~~a~~~L~~L~~~-~~~~~----------------- 377 (464)
......... ...+|.|+++|.+ . -.+-..+.+|..++.. ++...
T Consensus 209 ~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 209 RSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSK 287 (618)
T ss_dssp SHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSS
T ss_pred hChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccccc
Confidence 643211111 1456666665542 1 2334455555555543 11110
Q ss_pred ------------HHHh--------cCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhh
Q 012404 378 ------------EIGD--------LGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQ 437 (464)
Q Consensus 378 ------------~i~~--------~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~ 437 (464)
.+.. ..++..|..++.+. ++.++..|+.+|..++...+. .+ ......+...+.
T Consensus 288 ~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~----~~--~~~~~~i~~~l~ 360 (618)
T 1w63_A 288 NVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHN----AV--QRHRSTIVDCLK 360 (618)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHH----HH--GGGHHHHHHGGG
T ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHH----HH--HHHHHHHHHHcc
Confidence 0000 02456677777754 478888888888888875442 23 234456666677
Q ss_pred cCCHHHHHHHHHHHHHHhcc
Q 012404 438 DGTARAKRKATGILERLKRT 457 (464)
Q Consensus 438 ~g~~~~k~~A~~~L~~l~~~ 457 (464)
+.+..+|++|..+|..+...
T Consensus 361 d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 361 DLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp SSCHHHHHHHHHHHHHHCCS
T ss_pred CCChhHHHHHHHHHHHHccc
Confidence 77777888888888777543
No 112
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.39 E-value=1.1e-07 Score=93.43 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=45.1
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCC
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTI 132 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~ 132 (464)
...||||.+.+.+||++||||.||+.||.+|+.....+||+||+++....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 47999999999999999999999999999999855789999999887543
No 113
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.32 E-value=5.9e-06 Score=90.61 Aligned_cols=258 Identities=11% Similarity=0.110 Sum_probs=168.4
Q ss_pred CchhHHHHHHHHHHHhhcCc-hhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchH---HHHhc
Q 012404 184 TLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK---KLVAE 259 (464)
Q Consensus 184 ~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~---~~i~~ 259 (464)
+...+..|+..+..++.... ..-..... ..++.|+..+. +.++.++..++++|..++..-... .....
T Consensus 382 ~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 453 (861)
T 2bpt_A 382 NWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMN------DQSLQVKETTAWCIGRIADSVAESIDPQQHLP 453 (861)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred ChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 35678888889998886432 21111222 46778888887 557889999999988876432110 11111
Q ss_pred CCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc--chhhhcc--cCchHHHHHhcccC--CHHHHHHHHHHHHHhccC
Q 012404 260 TPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGK--SGALKPLIDLLDEG--HQSAMKDVASAIFNLCIT 333 (464)
Q Consensus 260 ~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~~~ 333 (464)
.++|.|+..|.+. +.++..++++|.+++..-. ....+.. ...++.|+.++... ++.++..++.+|..+...
T Consensus 454 --~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 454 --GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp --HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 3677788888765 8999999999999876421 1111211 35678888888753 367899999999999765
Q ss_pred chh-hhHHHhcCcHHHHHHHHcCC-----------------chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhc
Q 012404 334 HEN-KARAVRDGGVSVILKKIMDG-----------------VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE 394 (464)
Q Consensus 334 ~~~-~~~iv~~g~v~~Lv~lL~~~-----------------~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~ 394 (464)
... ....+. ..+|.+++.+... .++..++.+|.+++.. +....... ...++.++.+++.
T Consensus 531 ~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 531 ATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEK 608 (861)
T ss_dssp CCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHS
T ss_pred cchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHcc
Confidence 432 222222 4677777776521 3456788888888753 22111111 1356777788876
Q ss_pred cCCh-hHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 395 STCD-RNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 395 ~~~~-~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
.. . .+++.++.++..++..........+ ..+++.|...+...+..++..|..++..+.+.
T Consensus 609 ~~-~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 609 KD-SAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp TT-GGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 53 4 7899999999998876554444444 35788888888777778999999988877654
No 114
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=2.6e-07 Score=69.57 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=38.9
Q ss_pred CcccCccchhhccCcccCCCCcc-ccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 82 EEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
+++.||||++.+.+||++||||+ |++.++.+ ...||++|+++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 36789999999999999999999 99999964 3679999998865
No 115
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.26 E-value=1.9e-07 Score=78.47 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=50.1
Q ss_pred CCCcccCccchhhccCc-------ccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCCcch
Q 012404 80 CPEEFKCPLSKELMRDP-------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTILTPN 136 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dP-------v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~~n 136 (464)
-++.+.|||+.+.+.+| +.++|||+|+..+|.+|+.. ..+||.+|.++...++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 46688999999999998 88999999999999999998 5799999999988777664
No 116
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.24 E-value=4.2e-06 Score=95.90 Aligned_cols=270 Identities=12% Similarity=0.068 Sum_probs=179.1
Q ss_pred hhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 172 DHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
..+..++..+.+. ...|..|...|.+..+.....-..-.. ...++.|+..|. +.++.++..|+.+|..+...
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~-~~il~~Ll~~L~------d~~~~vR~~A~~~L~~l~~~ 78 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLE------DKNGEVQNLAVKCLGPLVSK 78 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTT------CSSHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH-HHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHh
Confidence 3577788888554 677888888888766522110000001 246677778777 55789999999999988754
Q ss_pred cchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcch------hhhcccCchHHHHHhcc-cCCHHHHHHH
Q 012404 251 DNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK------EVIGKSGALKPLIDLLD-EGHQSAMKDV 323 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a 323 (464)
-.. ..+ . .+++.|+..|.+++..+|..++.+|..++..-... ..-.-...++.|+..+. +++..++..|
T Consensus 79 ~~~-~~~-~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~a 154 (1230)
T 1u6g_C 79 VKE-YQV-E--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 154 (1230)
T ss_dssp SCH-HHH-H--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred CCH-HHH-H--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence 322 111 1 25677888888888888999999998887532211 01112457889999998 4788999999
Q ss_pred HHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHH
Q 012404 324 ASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 401 (464)
Q Consensus 324 l~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 401 (464)
+.+|..++........-.-...++.|+..|.++ .++..|+.+|..++...... + -...++.|+..+....+...+
T Consensus 155 l~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r 231 (1230)
T 1u6g_C 155 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTT 231 (1230)
T ss_dssp HHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSC
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHH
Confidence 999999985321100001123556666666654 67888999999999753221 2 224588888888765434677
Q ss_pred HHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 402 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 402 ~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
..|+.++..++...+......+ ...++.+...+++.++.+++.|...+..+.+.
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7889999988876554322222 36788888888888888999999998887654
No 117
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.21 E-value=0.00024 Score=75.30 Aligned_cols=247 Identities=9% Similarity=0.049 Sum_probs=168.9
Q ss_pred HHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 174 FLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 174 i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
++.+.+.+.+ ++..+..|+.++..+...+++.. .+.++.+..+|. +.|+.++..|+.+|..+...+.
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v------~~~~~~l~~lL~------D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM------EMFLPATKNLLN------EKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG------GGGGGGTTTSTT------CCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH------HHHHHHHHHHhC------CCCHhHHHHHHHHHHHHHHhCh
Confidence 5566666654 47788999999999988665432 257778888887 6689999999999999887654
Q ss_pred hHHHHhcCCCChHHHHHHHhc---------------CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc---
Q 012404 253 NKKLVAETPMVIPLLMDALRS---------------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE--- 314 (464)
Q Consensus 253 ~~~~i~~~~~~i~~Lv~lL~~---------------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--- 314 (464)
....... ..+|.++.+|.. .++-.+...+.+|..++..+... ....++.|..++..
T Consensus 212 ~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 212 DMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTET 285 (618)
T ss_dssp HHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCC
T ss_pred HHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhcccc
Confidence 3222222 378888888864 36788888889999888754321 12344556565531
Q ss_pred ---CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q 012404 315 ---GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCML 389 (464)
Q Consensus 315 ---~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv 389 (464)
.+..+...|+.++..+...+..+ ..+++.|.++|.++ .++..|+.+|..++.... ..+. .....++
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p--~~~~--~~~~~i~ 356 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKSESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH--NAVQ--RHRSTIV 356 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCCCHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH--HHHG--GGHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH--HHHH--HHHHHHH
Confidence 24578888999999886543221 24678888888753 788889999998886422 1222 2355677
Q ss_pred HHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 390 RIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 390 ~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
..+... +..++..|+.+|..++.... ...+ +..|...+...+...|+.+...+..++.
T Consensus 357 ~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 357 DCLKDL-DVSIKRRAMELSFALVNGNN--IRGM------MKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HGGGSS-CHHHHHHHHHHHHHHCCSSS--THHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHccCC-ChhHHHHHHHHHHHHccccc--HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 777754 48889999999988887542 2233 3455566666777888888888877764
No 118
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.20 E-value=3e-05 Score=85.14 Aligned_cols=268 Identities=9% Similarity=0.055 Sum_probs=171.9
Q ss_pred hHHHHHHhhcC---CchhHHHHHHHHHHHhhcCchh-hhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 173 HFLSLLKKMSA---TLPDQTEAAKELRLLTKRMPSF-RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 173 ~i~~Lv~~Ls~---~~~~~~~a~~~L~~L~~~~~~~-r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
.++.+++.+.. +...+..|++.+..+......+ ...... ...++.+...+. +.+.+++..++.+|..+.
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~~~------~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQ------CPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH-HHHHHHHHHHTT------CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHcC------CCCHHHHHHHHHHHHHHH
Confidence 34555555644 3567888999888876522211 000011 124555666555 456788999999988876
Q ss_pred cCcc--hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc-------------------chhhhc--ccCch
Q 012404 249 IHDN--NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS-------------------NKEVIG--KSGAL 305 (464)
Q Consensus 249 ~~~~--~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-------------------~~~~i~--~~g~i 305 (464)
.... ....+. ..+++.++..+.+.+..++..++.++..++.... ....+. -...+
T Consensus 246 ~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 323 (876)
T 1qgr_A 246 SLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp HHSGGGCHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHhHHHHHHHHH--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHh
Confidence 4332 122222 1478888888888888999999988888875310 000000 02456
Q ss_pred HHHHHhccc-------CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH--H
Q 012404 306 KPLIDLLDE-------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH--R 374 (464)
Q Consensus 306 ~~Lv~lL~~-------~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~--~ 374 (464)
+.++..|.. ++..++..|+.+|..|+..... .++. .+++.+...+.+. ..++.|+.+|..++... +
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 400 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH
Confidence 677777742 2456788899999888754321 2222 4566666667655 57888999999999852 3
Q ss_pred HHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhH--HHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012404 375 AVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKW--KAMREEESTHGTISKLAQDGTARAKRKATGILE 452 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~--~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~ 452 (464)
...... ...++.|+..+... ++.++..|+++|.+++...+... ...+ ...++.|...+++. ++++..|.++|.
T Consensus 401 ~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~ 475 (876)
T 1qgr_A 401 QLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFS 475 (876)
T ss_dssp HHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 332322 24688888888755 48999999999999998754321 1122 25666777777764 889999999999
Q ss_pred HHhcc
Q 012404 453 RLKRT 457 (464)
Q Consensus 453 ~l~~~ 457 (464)
++.+.
T Consensus 476 ~l~~~ 480 (876)
T 1qgr_A 476 SLAEA 480 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 119
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.19 E-value=2.8e-05 Score=85.34 Aligned_cols=273 Identities=11% Similarity=0.108 Sum_probs=176.7
Q ss_pred hHHHHHHhhcC---CchhHHHHHHHHHHHhhcCc-hhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 173 HFLSLLKKMSA---TLPDQTEAAKELRLLTKRMP-SFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 173 ~i~~Lv~~Ls~---~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
.++.+++.+.+ +...+..++..|..++.... +.-.... ...++.+...+... ..+..++..|+.+|.++.
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~----~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKE----EPSNNVKLAATNALLNSL 202 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHSTT----CSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHH--HHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHHH
Confidence 56777777754 45567788888888887421 1111111 24566667767632 125788999999998876
Q ss_pred cCcc-h-HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcch-hhhcccCchHHHHHhcccCCHHHHHHHHH
Q 012404 249 IHDN-N-KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVAS 325 (464)
Q Consensus 249 ~~~~-~-~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 325 (464)
..-. + ...... ..+++.+...+.+.+.+++..++.+|..+....... ........++.++..+.+.++.++..|+.
T Consensus 203 ~~~~~~~~~~~~~-~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~ 281 (876)
T 1qgr_A 203 EFTKANFDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281 (876)
T ss_dssp GGCHHHHTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHhHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4311 1 000000 125666777777778999999999999988643211 11122367888888877778899999999
Q ss_pred HHHHhccCchh----------------h--hHHHh---cCcHHHHHHHHcC-------C--chHHHHHHHHHHhhCCHHH
Q 012404 326 AIFNLCITHEN----------------K--ARAVR---DGGVSVILKKIMD-------G--VHVDELLAILAMLSTNHRA 375 (464)
Q Consensus 326 aL~~L~~~~~~----------------~--~~iv~---~g~v~~Lv~lL~~-------~--~~~~~a~~~L~~L~~~~~~ 375 (464)
.+.+++..... + ..... ...+|.+++.|.. . ..+..|..+|..++..-.
T Consensus 282 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~- 360 (876)
T 1qgr_A 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE- 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-
Confidence 99888754210 0 01111 2457778887741 1 567788888888875421
Q ss_pred HHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccCh-hhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 376 VEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDR-TKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
..+.. ..++.+...+.+. +...++.|+.+|..++.... +.....+ ...++.|...+.+..+.++..|.++|.++
T Consensus 361 -~~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 361 -DDIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (876)
T ss_dssp -GGGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -HhhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 11111 2345555666644 48899999999999998654 3333333 46788889999888999999999999999
Q ss_pred hccc
Q 012404 455 KRTV 458 (464)
Q Consensus 455 ~~~~ 458 (464)
.+..
T Consensus 436 ~~~~ 439 (876)
T 1qgr_A 436 CELL 439 (876)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8753
No 120
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.17 E-value=8.2e-07 Score=64.51 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=42.8
Q ss_pred CCcccCccchhhccCcccC--CCCcc-ccHHHHHHHHHcCCCCCCCCccccc
Q 012404 81 PEEFKCPLSKELMRDPVIL--ASGQT-FDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv~~--~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
+++..|+|+++-..|++++ ||||. ++..++.+|+.. +..||++|+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3567899999999999988 99999 799999999986 578999999875
No 121
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=3.4e-05 Score=71.45 Aligned_cols=184 Identities=10% Similarity=0.070 Sum_probs=133.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcc-cCCHHHHHHHHHHHHHhccCchhhhHHHh
Q 012404 265 PLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLD-EGHQSAMKDVASAIFNLCITHENKARAVR 342 (464)
Q Consensus 265 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~al~aL~~L~~~~~~~~~iv~ 342 (464)
+.+.+.+.+.+...|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..-.....-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3477788888999999999999998865 2211100 1246778888885 77999999999999999954321111112
Q ss_pred cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc-Chhh-
Q 012404 343 DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS-DRTK- 418 (464)
Q Consensus 343 ~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~-~~~~- 418 (464)
...+|.|++.+.+. .+++.|..+|.+++..... . ..++.|...+++. ++.+++.++..|..+... .+..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCc
Confidence 24789999998876 6788999999999875321 1 2466777888765 589999999999996544 3331
Q ss_pred HHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 419 WKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 419 ~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
....+ ...++.|..++.+...+++..|...+..+.+.-
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 22333 368889999999999999999999998887553
No 122
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.13 E-value=4.6e-05 Score=83.44 Aligned_cols=268 Identities=12% Similarity=0.141 Sum_probs=167.8
Q ss_pred HHHHHHhhcCC-chhHHHHHHHHHHHhhcCchh--hhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 174 FLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 174 i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~--r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
++.++..+.+. ...+..++..|..++...... ..... ...++.|+..|+ + ++.++..|+.+|.++...
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~------~-~~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQ------D-HPKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHT------S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhc------c-ChHHHHHHHHHHHHHHHh
Confidence 44555555543 566777888888777632110 01111 246677777776 3 378899999999887643
Q ss_pred cc------hHHHHhcCCCChHHHHHHHhcCC--HHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC-------
Q 012404 251 DN------NKKLVAETPMVIPLLMDALRSGT--IETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG------- 315 (464)
Q Consensus 251 ~~------~~~~i~~~~~~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------- 315 (464)
-. ....+ +.+++.|+.++.+.+ ..+|..++.+|..+.........-.-...++.+++.+...
T Consensus 484 ~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i 560 (861)
T 2bpt_A 484 LAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560 (861)
T ss_dssp HSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred cccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 11 11111 135677888887543 6789999999999887543221100124566666666421
Q ss_pred --------CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCCHH-HHHHHHhcC
Q 012404 316 --------HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTNHR-AVEEIGDLG 383 (464)
Q Consensus 316 --------~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~-~~~~i~~~g 383 (464)
...++..++.+|.+++..-.....-.-...++.++.++.+. .+++.++.++..++.... ....... .
T Consensus 561 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~ 639 (861)
T 2bpt_A 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-T 639 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-H
Confidence 33566788889988875433211111125677788888754 578889999998886421 1111111 2
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCC--HHHHHHHHHHHHHHhcc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGT--ARAKRKATGILERLKRT 457 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~--~~~k~~A~~~L~~l~~~ 457 (464)
.++.|+..+... +..++..|+.++..++..........+ ..+++.+.+.+++.+ ..+|..+..++..+...
T Consensus 640 i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 640 FSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 577788888643 478899999999999876655444444 367777788777654 67999999988877654
No 123
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=6e-07 Score=70.75 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=41.1
Q ss_pred CcccCccchhhccCcccC---CCCccccHHHHHHHHHc----C---CCCCCC--Cccc--ccCC
Q 012404 82 EEFKCPLSKELMRDPVIL---ASGQTFDRPYIQRWLKA----G---NRTCPR--TQQV--LSHT 131 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~---~~g~~~~r~~I~~~~~~----~---~~~~P~--~~~~--l~~~ 131 (464)
+.|+||||.+.+.+|+++ +|||.||+.|+++|+.. + ...||. |+.. ++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 578999999999999875 79999999999999863 2 236999 8887 5543
No 124
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=7.9e-07 Score=67.94 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=40.8
Q ss_pred CcccCccchhhccC--------------cccCC-CCccccHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 82 EEFKCPLSKELMRD--------------PVILA-SGQTFDRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 82 ~~f~CPi~~~~m~d--------------Pv~~~-~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
++-.|+|+++.|.+ ++.++ |||.|.+.+|.+|+.. +.+||++|+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 46679999999987 44554 9999999999999997 57999999987643
No 125
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.11 E-value=1.2e-06 Score=63.50 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=41.7
Q ss_pred cccCccchhhccCcccC--CCCcc-ccHHHHHHHHHcCCCCCCCCccccc
Q 012404 83 EFKCPLSKELMRDPVIL--ASGQT-FDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~--~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
+..|+|+++-.+|++++ ||||. |++.++.+|+.. +..||++|+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 56799999999999988 99998 899999999987 578999999875
No 126
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.06 E-value=5.3e-05 Score=76.47 Aligned_cols=263 Identities=6% Similarity=0.018 Sum_probs=169.1
Q ss_pred HHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCC--ChhhHHHHHHHHHccccCc--
Q 012404 177 LLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGI--NPNLQEDVITTLLNLSIHD-- 251 (464)
Q Consensus 177 Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~--~~~~~~~A~~~L~~Ls~~~-- 251 (464)
++..+.+. ... ..+...|..++..... . ..-.+.++.|+..++ +. ++..++.|+.+|..+...-
T Consensus 95 ll~~l~~~~~~v-~~~~~~i~~ia~~~~~-~---~~w~~ll~~L~~~l~------~~~~~~~~r~~al~~l~~l~~~~~~ 163 (462)
T 1ibr_B 95 VLQTLGTETYRP-SSASQCVAGIACAEIP-V---NQWPELIPQLVANVT------NPNSTEHMKESTLEAIGYICQDIDP 163 (462)
T ss_dssp HHHHTTCCCSSS-CSHHHHHHHHHHHHGG-G---TCCTTHHHHHHHHHH------CTTCCHHHHHHHHHHHHHHHHHSCG
T ss_pred HHHHhCCCCchh-hHHHHHHHHHHHHhcc-c---cccHHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHHHHhCCc
Confidence 45555332 334 5556666666653211 0 011478888988887 44 6789999999999886532
Q ss_pred chHHHHhcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHhcccCc-ch-hhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 252 NNKKLVAETPMVIPLLMDALRSG--TIETRSNAAAALFTLSALDS-NK-EVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 252 ~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~-~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
+.-..... .+++.++..|.+. +..+|..|+.++.++...-. +- ......-.++.|..++.++++.++..++.+|
T Consensus 164 ~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l 241 (462)
T 1ibr_B 164 EQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241 (462)
T ss_dssp GGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 11111111 3678888889887 79999999999998764211 10 0001111466666777777899999999999
Q ss_pred HHhccCchhhh-HHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHh---------------------cC
Q 012404 328 FNLCITHENKA-RAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD---------------------LG 383 (464)
Q Consensus 328 ~~L~~~~~~~~-~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~---------------------~g 383 (464)
..++....... ..+..+.++.++..+.+. .++..|+..+..++..........+ ..
T Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp HHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 99986543221 112226777777777654 6788899988888865311111111 12
Q ss_pred cHHHHHHHHhcc------CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Q 012404 384 GVSCMLRIIRES------TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRT 457 (464)
Q Consensus 384 ~i~~Lv~ll~~~------~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~ 457 (464)
.++.++..+... .+...+..|..+|..++...++ .++ ..+++.+...+++.+..+|+.|..+|..+.+.
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 355666666532 1246788999999999887653 343 36778888888888999999999999998763
No 127
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.95 E-value=1.2e-06 Score=66.47 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=39.3
Q ss_pred CcccCccchhhccCcccCCCCcc-ccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 82 EEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
++..|+||++.+.|||++||||. |++.++.+|. .||++|+++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 36789999999999999999999 8999998773 79999998764
No 128
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.89 E-value=6.8e-06 Score=65.96 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=40.1
Q ss_pred cccCccchhhccCc------------------ccCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 83 EFKCPLSKELMRDP------------------VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 83 ~f~CPi~~~~m~dP------------------v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
+-.|+||.+.|.+| ++++|||.|.+.||.+|+.. +.+||+||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45799999999887 34789999999999999987 689999999864
No 129
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.87 E-value=8.5e-05 Score=69.35 Aligned_cols=192 Identities=8% Similarity=0.099 Sum_probs=132.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-hcccC-cchhhhcc-cCchHHHHHhc-ccCCHHHHHHHHHHHHHhccCch-hhhH-H
Q 012404 267 LMDALRSGTIETRSNAAAALFT-LSALD-SNKEVIGK-SGALKPLIDLL-DEGHQSAMKDVASAIFNLCITHE-NKAR-A 340 (464)
Q Consensus 267 Lv~lL~~~~~~~~~~aa~~L~~-Ls~~~-~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~~~~-~~~~-i 340 (464)
+-..+.+.+..-|..|+..|.. +.... .....-.+ ...+..|.+.+ .+.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788899999999999999 87431 11110122 24677888888 56689999999999999984322 1111 1
Q ss_pred HhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH-HHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh
Q 012404 341 VRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-RAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 341 v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
.-.-.+|.+++.+.+. .+++.+..+|..++..- .....-.=...++.|+..|++. ++.+|+.++.+|..+....+.
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence 1123789999999875 57788888888887531 1000000002467788888866 489999999999999887652
Q ss_pred ---hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccccc
Q 012404 418 ---KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVNL 460 (464)
Q Consensus 418 ---~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~~ 460 (464)
.....+ ...+++.|.+++.+.++.+|..|...|..+.+.-+.
T Consensus 180 ~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 180 GYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred cchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 222222 137889999999999999999999999988765443
No 130
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.87 E-value=1.8e-06 Score=84.20 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=40.8
Q ss_pred CCcccCccchhhccCcccCCCCcc-ccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 81 PEEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
.+++.||||.+.+.+||++||||+ ||+.|+.+| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457899999999999999999999 999999988 579999998764
No 131
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.86 E-value=8.9e-05 Score=66.99 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=139.0
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcch-hhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCch-hhhH
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE-NKAR 339 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~-~~~~ 339 (464)
+.+..|..+|...++.++.++..+|..+...-+.. ....-...++.++.++++.+..+.-.|+++|..|-.+.. ....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 35777889999999999999999999988753222 222224578999999999999999999999999876653 2333
Q ss_pred HHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh
Q 012404 340 AVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 340 iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
+.. ++.+|..++.++ -..++|+..|.-+-.....+ +.+..+..++. +.+.++|..|.++|.+++..+.+
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~-Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVV-SPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHT-CSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHh-CCChhHHHHHHHHHHHhhcccCC
Confidence 333 567888888865 57888999999883222111 34566778885 45699999999999999998754
Q ss_pred hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 418 KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 418 ~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
. .++ .....-+..++++.++.++++|..+|..+..++
T Consensus 184 ~--~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 184 S--GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp C--CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred H--HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 3 333 356667888999999999999999999887654
No 132
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.82 E-value=4.8e-06 Score=69.59 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=80.7
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL 292 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 292 (464)
...++.|+.+|+ +.++.++..|+.+|..+.. . .++.|+.+|++.++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~------~~~~~vR~~A~~~L~~~~~-----------~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~- 71 (131)
T 1te4_A 11 SSGLVPRGSHMA------DENKWVRRDVSTALSRMGD-----------E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD- 71 (131)
T ss_dssp ----------CC------SSCCCSSSSCCSSTTSCSS-----------T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS-
T ss_pred cccHHHHHHHhc------CCCHHHHHHHHHHHHHhCc-----------h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-
Confidence 456777888887 4567777777777765421 1 36888888988889999999988877642
Q ss_pred CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHH
Q 012404 293 DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAM 368 (464)
Q Consensus 293 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~ 368 (464)
..+++.|+.+|.++++.++..|+++|..+. ...+++.|++++.++ .++..|+.+|..
T Consensus 72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 346888999998888899999999998875 234688888888754 567777777654
No 133
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.81 E-value=0.00015 Score=82.93 Aligned_cols=227 Identities=14% Similarity=0.098 Sum_probs=151.8
Q ss_pred hhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
...++.+++.+.+ +...|..|+..|..++..... ..+ ...++.|+..|. ++++.++..|+.+|..++.
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~---~~i~~~Ll~~l~------d~~~~vR~~a~~~L~~i~~ 115 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV---ETIVDTLCTNML------SDKEQLRDISSIGLKTVIG 115 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH---HHHHHHHHHHTT------CSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH---HHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHH
Confidence 3456777888864 367788899999988864332 111 235667777776 4566788888888877753
Q ss_pred Ccch-------HHHHhcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHH
Q 012404 250 HDNN-------KKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMK 321 (464)
Q Consensus 250 ~~~~-------~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 321 (464)
.-.. ...... .++|.|...+. +++...+..|+.+|..++........-.-...++.|+..|.++++.++.
T Consensus 116 ~l~~~~~~~~~~~~~~~--~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~ 193 (1230)
T 1u6g_C 116 ELPPASSGSALAANVCK--KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRK 193 (1230)
T ss_dssp HCC-----CCTHHHHHH--HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHH
T ss_pred hCCCcccccchHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3221 111222 37888999998 5789999999999999885321100001134677788888888889999
Q ss_pred HHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHhhCC-HHHHHHHHh--cCcHHHHHHHHhcc
Q 012404 322 DVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAMLSTN-HRAVEEIGD--LGGVSCMLRIIRES 395 (464)
Q Consensus 322 ~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~-~~~~~~i~~--~g~i~~Lv~ll~~~ 395 (464)
.|+.+|..++...... + -...++.|++.|.+. ..+..++.+|..++.. +. .+.. ...++.++..++..
T Consensus 194 ~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 194 RTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVD 267 (1230)
T ss_dssp HHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCC
Confidence 9999999998764332 1 224688888888643 4566678888777753 21 1211 24688888888754
Q ss_pred CChhHHHHHHHHHHHHhccChh
Q 012404 396 TCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 396 ~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
++.+++.|+.++..++...+.
T Consensus 268 -~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 268 -DDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp -CTTTHHHHHHHHHHHHHCTTC
T ss_pred -CHHHHHHHHHHHHHHHHHChH
Confidence 488999999999999886554
No 134
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.81 E-value=0.00012 Score=67.74 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=125.5
Q ss_pred HHHhhc-CCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcch-H
Q 012404 177 LLKKMS-ATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN-K 254 (464)
Q Consensus 177 Lv~~Ls-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~-~ 254 (464)
+.+.+. .+...|..|+..|..+....+.... ......++.|...+.. +.+..++..|+.+|..|+..-.. -
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~k-----d~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITK-----DSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 556664 4578899999999988875333211 1101356667777731 34688999999999988754321 1
Q ss_pred HHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc
Q 012404 255 KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH 334 (464)
Q Consensus 255 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~ 334 (464)
...+. .++|.|+..+.+.+..+|..+..+|..+...... ...++.|...|++.++.++..++..|..+....
T Consensus 93 ~~~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 93 SNYAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 12222 3788899999999999999999999999864321 235788888898889999999999999965432
Q ss_pred -hhh--hHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC
Q 012404 335 -ENK--ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST 371 (464)
Q Consensus 335 -~~~--~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~ 371 (464)
... ...+ ...+|.|+.+|.+. .++..|..+|..++.
T Consensus 165 ~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 165 QPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 111 1122 25789999999765 688889999988875
No 135
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.80 E-value=0.0014 Score=69.32 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=98.9
Q ss_pred HHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 174 FLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 174 i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
....++.++++ ...+.-+.-.+..++..+++.-.. ++..+..=|+ +.++-++..|+.+|.++...
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L------~iN~l~kDl~------~~n~~ir~lALr~L~~i~~~-- 141 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL------INNAIKNDLA------SRNPTFMGLALHCIANVGSR-- 141 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH------HHHHHHHHHH------SCCHHHHHHHHHHHHHHCCH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH------HHHHHHHhcC------CCCHHHHHHHHHHhhccCCH--
Confidence 45566767554 555655666666666644332111 2334444444 56788999999999988542
Q ss_pred hHHHHhcCCCChHHHHHHH--hcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHh
Q 012404 253 NKKLVAETPMVIPLLMDAL--RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 330 (464)
Q Consensus 253 ~~~~i~~~~~~i~~Lv~lL--~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 330 (464)
.+.+ .++|.+.+.| .+.++.+|+.|+-++..+....+ ..+...+.++.|..+|.+.++.++..|+.+|..+
T Consensus 142 ---e~~~--~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 142 ---EMAE--AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp ---HHHH--HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 2333 3677788999 78899999999999999987443 2232358999999999888999999999999999
Q ss_pred ccCc
Q 012404 331 CITH 334 (464)
Q Consensus 331 ~~~~ 334 (464)
+...
T Consensus 215 ~~~~ 218 (621)
T 2vgl_A 215 AQKN 218 (621)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8654
No 136
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.4e-05 Score=58.67 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=40.1
Q ss_pred CCCcccCccchhhccCcccCCCCcc-ccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 80 CPEEFKCPLSKELMRDPVILASGQT-FDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 80 ~p~~f~CPi~~~~m~dPv~~~~g~~-~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
-.++..|+|+++-..|+|++||||. |++.++.+ ...||++|+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 4457899999999999999999999 99999983 3679999998764
No 137
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.74 E-value=0.0008 Score=60.84 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=135.9
Q ss_pred hhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCch-hhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 171 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPS-FRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
.+.+..|+..|.. +...+..++..|-.+-+.-+. .+..+.+ ..++.++.++. +.|..+.-.|+.+|..|-
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~Ld~iI~llk------~~dEkval~A~r~L~~LL 103 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHLDVFINALS------QENEKVTIKALRALGYLV 103 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHTCC------STTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHHHHHHHHHh------ccchhHHHHHHHHHHHHH
Confidence 3456677777754 478899999999998886433 4444554 68899999998 668899999999998886
Q ss_pred cCcc-hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 249 IHDN-NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 249 ~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
.+.+ ....+.. +...|++++++++.-.+..++..+..|..... ..+++..|..++.+.+++++..|+.+|
T Consensus 104 e~vpL~~~~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L 174 (265)
T 3b2a_A 104 KDVPMGSKTFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLF 174 (265)
T ss_dssp TTCCBCHHHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cCCCCCHHHHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6544 3333332 45678999999999999999999999833322 234567888999888999999999999
Q ss_pred HHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH
Q 012404 328 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH 373 (464)
Q Consensus 328 ~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~ 373 (464)
.+++...+....+ .+++.-+-++|.+. .+++.|+.+|..+.+.|
T Consensus 175 ~eia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 175 LNMLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHhhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 9998865433322 12333455566654 68999999999999863
No 138
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.62 E-value=0.0021 Score=61.59 Aligned_cols=180 Identities=9% Similarity=0.056 Sum_probs=131.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-hcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhc-C
Q 012404 267 LMDALRSGTIETRSNAAAALFT-LSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRD-G 344 (464)
Q Consensus 267 Lv~lL~~~~~~~~~~aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~-g 344 (464)
+++-|.+++.+.++.+..-|.. ++.+.+....++..+++..|+.+...++.+.+..++.||.+|-....+...+++. .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 4555667777777777777776 5556678889999999999999999989999999999999999988888777754 5
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCCHH-HHHHHHh--------cC--cHHHHHHHHhc--cCChhHHHHHHHHHH
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTNHR-AVEEIGD--------LG--GVSCMLRIIRE--STCDRNKENCIAILH 409 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~-~~~~i~~--------~g--~i~~Lv~ll~~--~~~~~~~~~A~~~L~ 409 (464)
.|..|..++.+. .+...|+.+|..++...+ +...+.+ .| -...|+.+|+. +.+...+.+|..++.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 688888888754 677889999999987543 3322221 12 26789999972 335899999999998
Q ss_pred HHhccChh-h-HHHH---HHhhccHHHHHHHhhcC--CHHHHHH
Q 012404 410 TICLSDRT-K-WKAM---REEESTHGTISKLAQDG--TARAKRK 446 (464)
Q Consensus 410 ~L~~~~~~-~-~~~~---~~~~g~~~~L~~Ll~~g--~~~~k~~ 446 (464)
.+-...++ . +..+ .++.|.-..+.+.+... ++..+++
T Consensus 283 ~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 283 KTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 88776552 1 2233 44556666777766554 4455554
No 139
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.58 E-value=1.1e-05 Score=65.71 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=3.0
Q ss_pred CCCCCCcccCccchhhccCcc-----------------c-CCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 77 TVSCPEEFKCPLSKELMRDPV-----------------I-LASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 77 ~~~~p~~f~CPi~~~~m~dPv-----------------~-~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
.+++.+ -.|+||.+.|.+|. + ++|||.|.+.||.+|+.. +.+||.||+++.
T Consensus 43 ~wd~~~-d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 43 AWDIVV-DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp EECCCC-----------------------------------------------------------------
T ss_pred eecCCC-CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 455644 47999999998752 2 489999999999999987 679999999764
No 140
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.57 E-value=0.0026 Score=60.92 Aligned_cols=146 Identities=5% Similarity=0.041 Sum_probs=116.4
Q ss_pred HHHhcccCCHHHHHHHHHHHHH-hccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhc-C
Q 012404 308 LIDLLDEGHQSAMKDVASAIFN-LCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDL-G 383 (464)
Q Consensus 308 Lv~lL~~~~~~~~~~al~aL~~-L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~-g 383 (464)
+++-|.+.+.+.++.++.-|.. +..+..-...++..+++..|++.+... +.+.+++.+|.+|-.+.++-..++++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 4455556777888999999988 666678889999999999999999754 78999999999999999999777754 5
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhc---------cHHHHHHHhh---cCCHHHHHHHHHHH
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEES---------THGTISKLAQ---DGTARAKRKATGIL 451 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g---------~~~~L~~Ll~---~g~~~~k~~A~~~L 451 (464)
.|..|+.++.+ ....+...|+.+|..++..++.....+..+.. ....|+.+++ +++..++..|..++
T Consensus 203 fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 203 TIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 78889999985 45888899999999999988765544433222 2668888887 67888999988877
Q ss_pred HHH
Q 012404 452 ERL 454 (464)
Q Consensus 452 ~~l 454 (464)
--+
T Consensus 282 N~l 284 (339)
T 3dad_A 282 NKT 284 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 141
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.55 E-value=0.0018 Score=65.03 Aligned_cols=219 Identities=10% Similarity=0.076 Sum_probs=145.6
Q ss_pred hhhHHHHHHHHHccccCcchHHHHhcCCC-ChHHHHHHHhc---------------C--CHHHHHHHHHHHHHhcccCcc
Q 012404 234 PNLQEDVITTLLNLSIHDNNKKLVAETPM-VIPLLMDALRS---------------G--TIETRSNAAAALFTLSALDSN 295 (464)
Q Consensus 234 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~-~i~~Lv~lL~~---------------~--~~~~~~~aa~~L~~Ls~~~~~ 295 (464)
...+.-++..|..|...+..|..+...++ .+|.++.+++. + +.+.+-.++-+++-|+..++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 34455678888888888889988876543 46777655541 1 256678888899999998776
Q ss_pred hhhhcccCch--HHHHHhcccC-CHHHHHHHHHHHHHhccCch-h----hh-HHHhcCcHHHHHHHHcCC-----chHHH
Q 012404 296 KEVIGKSGAL--KPLIDLLDEG-HQSAMKDVASAIFNLCITHE-N----KA-RAVRDGGVSVILKKIMDG-----VHVDE 361 (464)
Q Consensus 296 ~~~i~~~g~i--~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~-~----~~-~iv~~g~v~~Lv~lL~~~-----~~~~~ 361 (464)
...+...+.. +.|+.+++.. ..++.+-++.+|.||..... + .. .++..++ +.+++.|... ++.+.
T Consensus 262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ed 340 (480)
T 1ho8_A 262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQD 340 (480)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHH
Confidence 6666666643 6777778764 67899999999999987651 1 12 2333444 5566666532 22222
Q ss_pred HH-------HHHHHhhCCHHHH------------------------HHHHhcC--cHHHHHHHHhc---------cCChh
Q 012404 362 LL-------AILAMLSTNHRAV------------------------EEIGDLG--GVSCMLRIIRE---------STCDR 399 (464)
Q Consensus 362 a~-------~~L~~L~~~~~~~------------------------~~i~~~g--~i~~Lv~ll~~---------~~~~~ 399 (464)
-- .....+++.++.+ ..+.+.+ .+..|+++|.+ +.++.
T Consensus 341 l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~ 420 (480)
T 1ho8_A 341 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKI 420 (480)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcc
Confidence 11 1112222112222 2232222 47889999984 22366
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 400 NKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 400 ~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
+..-|+.=|..++..-|.. +.++.+.|+-..+.+|+.+.++.+|..|...++.+
T Consensus 421 ~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 421 IIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred eEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6677888888888888754 56777889999999999999999999999888755
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00058 Score=63.60 Aligned_cols=186 Identities=10% Similarity=0.078 Sum_probs=125.3
Q ss_pred HHhhc-CCchhHHHHHHHHHH-HhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc-hH
Q 012404 178 LKKMS-ATLPDQTEAAKELRL-LTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN-NK 254 (464)
Q Consensus 178 v~~Ls-~~~~~~~~a~~~L~~-L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~-~~ 254 (464)
-+.++ ++..+|.+|+..|.. +....+.....-.+....+..|...+.. +.+..++..|+.+|..++.+-. ..
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-----D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-----DANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHhccccc
Confidence 44453 458889999999998 8754333211011111345666677732 4567889999999999874322 11
Q ss_pred -H-HHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhc--ccCchHHHHHhcccCCHHHHHHHHHHHHHh
Q 012404 255 -K-LVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIG--KSGALKPLIDLLDEGHQSAMKDVASAIFNL 330 (464)
Q Consensus 255 -~-~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 330 (464)
. .... .++|.++..+++....++.++..+|..++..-+. .... -..+++.|+..|++.++.++..++.+|..+
T Consensus 97 f~~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 97 FSKDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp SCHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 1 1221 2688888888888899999999999888864321 1111 124678889999888999999999999988
Q ss_pred ccCchhh-hHH---HhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC
Q 012404 331 CITHENK-ARA---VRDGGVSVILKKIMDG--VHVDELLAILAMLST 371 (464)
Q Consensus 331 ~~~~~~~-~~i---v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~ 371 (464)
....... ..+ +....+|.|.+++.+. .+++.|..+|..++.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7654321 222 2246899999999875 688889988888873
No 143
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=8.3e-05 Score=56.29 Aligned_cols=52 Identities=15% Similarity=0.313 Sum_probs=42.4
Q ss_pred CCCcccCccchhhc--cCcccCCCC-----ccccHHHHHHHHHcC-CCCCCCCcccccCC
Q 012404 80 CPEEFKCPLSKELM--RDPVILASG-----QTFDRPYIQRWLKAG-NRTCPRTQQVLSHT 131 (464)
Q Consensus 80 ~p~~f~CPi~~~~m--~dPv~~~~g-----~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~ 131 (464)
..++..|+||.+-+ .+|+++||+ |.|-+.||++|+... ..+||+|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34467899999776 578899985 999999999999863 36899999988643
No 144
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.43 E-value=0.011 Score=65.09 Aligned_cols=263 Identities=13% Similarity=0.138 Sum_probs=172.6
Q ss_pred hhHHHHHHhhcCCchhHHHHHHHHHHHhhcCchh--hhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 172 DHFLSLLKKMSATLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 172 ~~i~~Lv~~Ls~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
+.+..+.+.+.....- +.|+..+..++...... -+.+. .+.++.++..+. +....+++.|-.++..+..
T Consensus 54 ~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~------dk~~~v~~aa~~~~~~~~~ 124 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAG------NKDKEIQSVASETLISIVN 124 (986)
T ss_dssp HHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTT------CSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhc------CCchHHHHHHHHHHHHHHH
Confidence 4455566666443112 77888888888643221 11111 134555555554 3456677766655555432
Q ss_pred C-cchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccCcchhhhcc--cCchHHHHHhcccCCHHHHHHHHH
Q 012404 250 H-DNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALDSNKEVIGK--SGALKPLIDLLDEGHQSAMKDVAS 325 (464)
Q Consensus 250 ~-~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~al~ 325 (464)
. ..+.. ..++|.|+..|+++ ..+.+..|+.+|..|+... ...++. ...||.+.+.+.+..+++.+.|..
T Consensus 125 ~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~ 197 (986)
T 2iw3_A 125 AVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATA 197 (986)
T ss_dssp HSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHH
Confidence 1 11111 13688899999776 5899999999999999754 233333 467888888888778999999999
Q ss_pred HHHHhccCchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHH
Q 012404 326 AIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCI 405 (464)
Q Consensus 326 aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~ 405 (464)
++..+|..-.|+.. ...+|.||+.+.++.-..+++..|..-.--.+.-...+.- .+|.|..-|... +...+++++
T Consensus 198 ~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~-~~p~l~r~l~~~-~~~~~r~~~ 272 (986)
T 2iw3_A 198 AMTKATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSI-MVPLLSRGLNER-ETGIKRKSA 272 (986)
T ss_dssp HHHHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHH-HHHHHHHHHTSS-SHHHHHHHH
T ss_pred HHHHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHH-HHHHHHhhhccC-cchhheeeE
Confidence 99999987666653 3579999999998866777776665554433322111111 145555556543 478889999
Q ss_pred HHHHHHhc--cChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHHhcc
Q 012404 406 AILHTICL--SDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKRT 457 (464)
Q Consensus 406 ~~L~~L~~--~~~~~~~~~~~~~g~~~~L~~Ll~~-g~~~~k~~A~~~L~~l~~~ 457 (464)
-++-|+|. .+|......+ ...+|-|.+.... .+|++++.|..++.-|.+.
T Consensus 273 ~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 273 VIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred EEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 99999997 4555544555 5788888887644 5889999999998888654
No 145
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.42 E-value=0.00031 Score=58.35 Aligned_cols=118 Identities=17% Similarity=0.130 Sum_probs=83.4
Q ss_pred hHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
.++.++..|.+. ...+..|+..|..+ .+ ..++.|+.+|+ +.++.++..|+.+|.++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~-----------~~--~~~~~L~~~L~------d~~~~vR~~A~~aL~~~~~-- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRM-----------GD--EAFEPLLESLS------NEDWRIRGAAAWIIGNFQD-- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSC-----------SS--TTHHHHHHGGG------CSCHHHHHHHHHHHGGGCS--
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHh-----------Cc--hHHHHHHHHHc------CCCHHHHHHHHHHHHhcCC--
Confidence 455666667543 44454444444322 12 23688999998 5689999999999988752
Q ss_pred chHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHh
Q 012404 252 NNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 330 (464)
Q Consensus 252 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 330 (464)
..+++.|+.+|+++++.+|..++++|..+. ...+++.|+.+|+++++.++..|+.+|..+
T Consensus 72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 135888999999999999999999999875 345689999999888999999999988653
No 146
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.35 E-value=0.0097 Score=62.92 Aligned_cols=249 Identities=9% Similarity=0.066 Sum_probs=155.5
Q ss_pred HHHHHHhh--cC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC
Q 012404 174 FLSLLKKM--SA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH 250 (464)
Q Consensus 174 i~~Lv~~L--s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~ 250 (464)
++.+.+.+ .+ ++.++..|+-++..+.+.+++. +.. .+.++.|..+|. +.|+.++..|+.+|..++..
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~-~~~~~~l~~lL~------d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPM-GDWTSRVVHLLN------DQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCC-CSCHHHHHHHTT------CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCc-hhHHHHHHHHhC------CCCccHHHHHHHHHHHHHHh
Confidence 34555666 43 3678889999999988865543 322 488999999997 56899999999999988765
Q ss_pred cchHHHHhcCCCChHHHHHHHh----cC-------------CHHHHHHHHHHHHHhcccCc--chhhhcccCchHHHHHh
Q 012404 251 DNNKKLVAETPMVIPLLMDALR----SG-------------TIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDL 311 (464)
Q Consensus 251 ~~~~~~i~~~~~~i~~Lv~lL~----~~-------------~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~l 311 (464)
+.. .+. ..+|.++..|. .+ ++-.+......|..+...++ .+..+. ..++.++..
T Consensus 218 ~~~--~~~---~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~ 290 (621)
T 2vgl_A 218 NPE--EFK---TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNK 290 (621)
T ss_dssp CHH--HHT---THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHH
T ss_pred ChH--HHH---HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHh
Confidence 432 111 24555555443 22 45677777777776665322 111111 123333332
Q ss_pred cc---------cCCH--HHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHH
Q 012404 312 LD---------EGHQ--SAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEE 378 (464)
Q Consensus 312 L~---------~~~~--~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~ 378 (464)
+. ..+. .+.-.|+.++..+...++... .++..|..+|.+. +++-.|+..|..++........
T Consensus 291 ~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~ 365 (621)
T 2vgl_A 291 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA 365 (621)
T ss_dssp HHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHH
T ss_pred hccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHH
Confidence 21 1122 677888888888864332222 3567788888643 6778899999999876422223
Q ss_pred HHhcCcHHHHHHHHh-ccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 379 IGDLGGVSCMLRIIR-ESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 379 i~~~g~i~~Lv~ll~-~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
+. .....++..+. +. +..++..|+.+|..++.. .+...++ ..|...+...+...++.+...+..++
T Consensus 366 ~~--~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~~--~Nv~~Iv------~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 366 VK--THIETVINALKTER-DVSVRQRAVDLLYAMCDR--SNAQQIV------AEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HH--TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCH--HHHHHHH------HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHhccCC-CHhHHHHHHHHHHHHcCh--hhHHHHH------HHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 23667777787 44 488999999999998853 3333333 34555555666777777666666554
No 147
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.23 E-value=0.01 Score=64.81 Aligned_cols=198 Identities=12% Similarity=0.049 Sum_probs=125.6
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHhcccC
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR-SGTIETRSNAAAALFTLSALD 293 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~ 293 (464)
+++.|..+|. +++....+.|+.+|..+-.+..|.. ++..|+..+. ..+..+++.++..|.-+..
T Consensus 473 v~e~L~~~L~------dd~~~~~~~AalALGli~vGTgn~~-------ai~~LL~~~~e~~~e~vrR~aalgLGll~~-- 537 (963)
T 4ady_A 473 VYEALKEVLY------NDSATSGEAAALGMGLCMLGTGKPE-------AIHDMFTYSQETQHGNITRGLAVGLALINY-- 537 (963)
T ss_dssp HHHHHHHHHH------TCCHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHh------cCCHHHHHHHHHHHhhhhcccCCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--
Confidence 3555666665 2233444455555544333332222 3344555543 3366777777777775543
Q ss_pred cchhhhcccCchHHHHHhccc-CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC---chHHHHHHHHHHh
Q 012404 294 SNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG---VHVDELLAILAML 369 (464)
Q Consensus 294 ~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~---~~~~~a~~~L~~L 369 (464)
++...++.+++.|.. .++-++..++.++.--+....|.. +|+.|+..+.++ .++..|+..|..+
T Consensus 538 ------g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI 605 (963)
T 4ady_A 538 ------GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFV 605 (963)
T ss_dssp ------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhh
Confidence 233457788888875 477777777777764433333322 455666666532 6788888888887
Q ss_pred hCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHH
Q 012404 370 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATG 449 (464)
Q Consensus 370 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~ 449 (464)
....+ ..++.++.++....++.++..|..+|..++..++.. .++..|..++++.+..+++.|..
T Consensus 606 ~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~~D~d~~Vrq~Ai~ 669 (963)
T 4ady_A 606 LLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLTKDPVDFVRQAAMI 669 (963)
T ss_dssp TSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHccCCCHHHHHHHHH
Confidence 76542 346777776665556999999999999999877642 34457778888888889988888
Q ss_pred HHHHHh
Q 012404 450 ILERLK 455 (464)
Q Consensus 450 ~L~~l~ 455 (464)
.|..+.
T Consensus 670 ALG~Ig 675 (963)
T 4ady_A 670 ALSMIL 675 (963)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 887764
No 148
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.16 E-value=0.069 Score=53.66 Aligned_cols=233 Identities=14% Similarity=0.143 Sum_probs=142.7
Q ss_pred CCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc---hHHHH-hcCCCChHHHHHHHhcCCHH-HHHHHHHHHH
Q 012404 213 HDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN---NKKLV-AETPMVIPLLMDALRSGTIE-TRSNAAAALF 287 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~---~~~~i-~~~~~~i~~Lv~lL~~~~~~-~~~~aa~~L~ 287 (464)
..++..++.+|+. ..+.++....+..+..|-..+. .+..+ ...+.....+.....+.+.. ....+...+.
T Consensus 76 ~~~~~~~l~lL~~-----~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ 150 (480)
T 1ho8_A 76 GKTLIPLIHLLST-----SDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS 150 (480)
T ss_dssp STTHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhh-----cChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHH
Confidence 4577888898885 3467888888887777755554 33333 44332222222222233333 3344444333
Q ss_pred HhcccCcchhhhcccCchHH------HHHhcccC-CHHHHHHHHHHHHHhccCchhhhHHHhcC--cHHHHHHHHcC---
Q 012404 288 TLSALDSNKEVIGKSGALKP------LIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDG--GVSVILKKIMD--- 355 (464)
Q Consensus 288 ~Ls~~~~~~~~i~~~g~i~~------Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~iv~~g--~v~~Lv~lL~~--- 355 (464)
-++.... . ...+++. ++..|... +...+.-++.+|..|...++.|..+.+.+ .+|.+++++..
T Consensus 151 ll~~~~~-~----~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~ 225 (480)
T 1ho8_A 151 LLVQNGL-H----NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATD 225 (480)
T ss_dssp HHTSTTT-C----CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HHhccCC-c----cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhc
Confidence 4432211 1 1222222 33444442 34556679999999999999999998653 47888765431
Q ss_pred ------------C----chHHHHHHHHHHhhCCHHHHHHHHhcCcH--HHHHHHHhccCChhHHHHHHHHHHHHhccChh
Q 012404 356 ------------G----VHVDELLAILAMLSTNHRAVEEIGDLGGV--SCMLRIIRESTCDRNKENCIAILHTICLSDRT 417 (464)
Q Consensus 356 ------------~----~~~~~a~~~L~~L~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~ 417 (464)
+ .++-+++-++|.|+-.++....+...+.. +.|+.+++...-+++.+-++.+|.|+....+.
T Consensus 226 ~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 226 SQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp -------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred cccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 1 23567899999999999988888877754 67888888765588889999999999987632
Q ss_pred ----hHHHHHHhhccHHHHHHHhhcC--CHHHHHHHHHHHHHHh
Q 012404 418 ----KWKAMREEESTHGTISKLAQDG--TARAKRKATGILERLK 455 (464)
Q Consensus 418 ----~~~~~~~~~g~~~~L~~Ll~~g--~~~~k~~A~~~L~~l~ 455 (464)
...+++...++++.+..|.... ++++.+--..+...|.
T Consensus 306 ~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~ 349 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILE 349 (480)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHH
Confidence 2233332234555555555443 7767666555555554
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.86 E-value=0.019 Score=55.96 Aligned_cols=242 Identities=8% Similarity=0.055 Sum_probs=136.7
Q ss_pred HHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 174 FLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 174 i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
....++.+.++ ...++-..-.+..+++..++. |. ++..|..=++ +.++-++-.|+++|.++...+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---iL----v~Nsl~kDl~------~~N~~iR~lALRtL~~I~~~~- 135 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---II----VTSSLTKDMT------GKEDSYRGPAVRALCQITDST- 135 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---GG----GHHHHHHHHH------SSCHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---HH----HHHHHHhhcC------CCcHhHHHHHHHHHhcCCCHH-
Confidence 34456666554 555555555566666632111 10 2333444444 567889999999999986544
Q ss_pred hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhcc
Q 012404 253 NKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 253 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 332 (464)
+++ ...+.+.+.|.+.++-+|+.|+-+...|..... ..+ .+.+..+-+++.+.++.++.+|+.+|+.++.
T Consensus 136 ----m~~--~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 136 ----MLQ--AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp ----THH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred ----HHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 222 245667788889999999999999998875442 222 2689999999999999999999999999986
Q ss_pred CchhhhHHHhcCcHHHHHHHHcCCc--hHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHH
Q 012404 333 THENKARAVRDGGVSVILKKIMDGV--HVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 409 (464)
Q Consensus 333 ~~~~~~~iv~~g~v~~Lv~lL~~~~--~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 409 (464)
.+. . ++..|+..+..+. ....-+.+|..+... ++.-.. .....++.|...+++. ++.+.-.|+.++.
T Consensus 206 ~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 206 NDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-RDSPLFDFIESCLRNK-HEMVVYEAASAIV 275 (355)
T ss_dssp TCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCS-SHHHHHHHHHHHT
T ss_pred hch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 542 1 3445555554432 233333444444332 111000 1122344555556654 4777878888887
Q ss_pred HHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 410 TICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 410 ~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
.+..... ... ..++..|..++.+.++.+|--|...|..+.
T Consensus 276 ~l~~~~~----~~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 276 NLPGCSA----KEL--APAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp C-----------------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred hccCCCH----HHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 7755322 122 244566667777777777776665555443
No 150
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.80 E-value=0.23 Score=43.28 Aligned_cols=213 Identities=15% Similarity=0.173 Sum_probs=143.2
Q ss_pred hhhhHHHHHHhhcCC-chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccc
Q 012404 170 DRDHFLSLLKKMSAT-LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLS 248 (464)
Q Consensus 170 ~~~~i~~Lv~~Ls~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls 248 (464)
+...+..++..|..+ ..+|..|+..+..+++..++.... .+..|+.+++. ++..........++.-++
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep------l~~kL~vm~~k-----sEaIpltqeIa~a~G~la 98 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP------MLKKLFSLLKK-----SEAIPLTQEIAKAFGQMA 98 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH------HHHHHHHHHHH-----CCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH------HHHHHHHHHhh-----cccCchHHHHHHHHhHHH
Confidence 345677888888776 578999999999999976665543 34457777764 334455455566666555
Q ss_pred cCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHHHH
Q 012404 249 IHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAI 327 (464)
Q Consensus 249 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL 327 (464)
.- +..++. +++|.+..=.+-|++..+.+...+|..+.... +.. .+++.-+..++.+.+..-+-.|+..|
T Consensus 99 ~i---~Pe~v~--~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi 168 (253)
T 2db0_A 99 KE---KPELVK--SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNFI 168 (253)
T ss_dssp HH---CHHHHH--HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred Hh---CHHHHH--hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 43 334443 26776666667889999999999999988643 222 34567788899887765666666666
Q ss_pred HHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhccCChhHHHHH
Q 012404 328 FNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN-HRAVEEIGDLGGVSCMLRIIRESTCDRNKENC 404 (464)
Q Consensus 328 ~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A 404 (464)
..+ ++|..+-+. -.+|.|+.+|.++ -++..|+.+|.+++.- +..|..+. ..++-+. +.|+.++...
T Consensus 169 ~al---Gen~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~-D~S~lv~~~V 237 (253)
T 2db0_A 169 EAM---GENSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELN-DTSSLVNKTV 237 (253)
T ss_dssp HTC---CTTTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCC-CSCHHHHHHH
T ss_pred HHH---hccCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhc-CcHHHHHHHH
Confidence 555 445555443 4789999999876 5788899999999985 55454432 2333343 3457777777
Q ss_pred HHHHHHHhcc
Q 012404 405 IAILHTICLS 414 (464)
Q Consensus 405 ~~~L~~L~~~ 414 (464)
...|..|..-
T Consensus 238 ~egL~rl~l~ 247 (253)
T 2db0_A 238 KEGISRLLLL 247 (253)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 151
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.55 E-value=0.043 Score=60.43 Aligned_cols=257 Identities=12% Similarity=0.109 Sum_probs=163.8
Q ss_pred hHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCc
Q 012404 173 HFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHD 251 (464)
Q Consensus 173 ~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~ 251 (464)
.+..+++.++. +......++..|..+...+... .... .+.+..|...+.... .-|.|+.++..++...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~k~--------~~~~a~~~~~~~~~~~ 83 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVP-EHFFGELAKGIKDKK--------TAANAMQAVAHIANQS 83 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCC-HHHHHHHHHHHTSHH--------HHHHHHHHHHHHTCTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccc-hhHHHHHHHHHhccC--------CHHHHHHHHHHHHHhc
Confidence 34456666643 3456667777787776633221 1222 356667777766321 1188888888887544
Q ss_pred ch----HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcccC-CHHHHHHHHH
Q 012404 252 NN----KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEG-HQSAMKDVAS 325 (464)
Q Consensus 252 ~~----~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~ 325 (464)
.. -..++ +.+|.+...+.+....+|.+|..++..+... +.+.. ..++|.|+.-|.+. .=..+..|+.
T Consensus 84 ~~~~~~e~~~~---~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~ 156 (986)
T 2iw3_A 84 NLSPSVEPYIV---QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILA 156 (986)
T ss_dssp TCCTTTHHHHH---TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCCcccchH---HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHH
Confidence 21 22222 2567777776666788998888888777653 22222 45689999988765 4578999999
Q ss_pred HHHHhccCchhhhHHHh--cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHH
Q 012404 326 AIFNLCITHENKARAVR--DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 401 (464)
Q Consensus 326 aL~~L~~~~~~~~~iv~--~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 401 (464)
+|..|+.... ..+.. ...||.+-+.+-+. .+...|..++..+|..-.|+.. ...||.|++.+.+. ...
T Consensus 157 ~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p---~~~ 228 (986)
T 2iw3_A 157 AFSAMVDAAK--DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP---TEV 228 (986)
T ss_dssp HHHHHHHHSH--HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT---THH
T ss_pred HHHHHHHHhH--HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh---hhh
Confidence 9999986542 22222 25788888887764 7888889999998874333211 14689999999853 334
Q ss_pred HHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 402 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 402 ~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
..++..|..-+.-..-.. ..+ +-.+|.|.+=+...+..+|++++.++.||++--
T Consensus 229 ~~~~~~l~~~tfv~~v~~-~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 229 PETVHLLGATTFVAEVTP-ATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp HHHHHHHTTCCCCSCCCH-HHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCeeEeeecc-hhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence 555666665544332211 111 245566666666668889999999999999853
No 152
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.48 E-value=0.19 Score=54.91 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=122.0
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhc-CCHHHHHHHHHHHHHhcccC
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRS-GTIETRSNAAAALFTLSALD 293 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~ 293 (464)
++..|+..+.+ +.+..++..++..|..+..+. ...++.+++.|.. .++.+|..++.++.--....
T Consensus 508 ai~~LL~~~~e-----~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 508 AIHDMFTYSQE-----TQHGNITRGLAVGLALINYGR---------QELADDLITKMLASDESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhc-----cCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC
Confidence 34555555442 234566777777776554443 2357778888875 46777777776665333333
Q ss_pred cchhhhcccCchHHHHHhcccC-CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcC-C--chHHHHHHHHHHh
Q 012404 294 SNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-G--VHVDELLAILAML 369 (464)
Q Consensus 294 ~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~-~--~~~~~a~~~L~~L 369 (464)
.| ..+|..|+..+.++ +..++..|+.+|..+...++ ..++.++++|.. . .++..|..+|..+
T Consensus 574 Gn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli 639 (963)
T 4ady_A 574 GN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIA 639 (963)
T ss_dssp CC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHH
T ss_pred CC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 22 23457677766554 77899999999998765543 356777776653 2 6788899999999
Q ss_pred hCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc--CCHHHHHHH
Q 012404 370 STNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD--GTARAKRKA 447 (464)
Q Consensus 370 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~--g~~~~k~~A 447 (464)
+.+.... .++..|..++.. .++.++.+|+.+|..+.....+.....+ .++...|.+...+ .++.++-.|
T Consensus 640 ~aGn~~~------~aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga 710 (963)
T 4ady_A 640 CAGKGLQ------SAIDVLDPLTKD-PVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGA 710 (963)
T ss_dssp TSSSCCH------HHHHHHHHHHTC-SSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred ccCCCcH------HHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHH
Confidence 8653322 134555566654 4599999999999999886543211111 2334445555543 244455444
Q ss_pred HHHH
Q 012404 448 TGIL 451 (464)
Q Consensus 448 ~~~L 451 (464)
.-+.
T Consensus 711 ~iAq 714 (963)
T 4ady_A 711 CVAQ 714 (963)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 153
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.42 E-value=0.19 Score=48.98 Aligned_cols=206 Identities=13% Similarity=0.075 Sum_probs=126.6
Q ss_pred chhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc
Q 012404 215 AIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDS 294 (464)
Q Consensus 215 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 294 (464)
....++.++. +.|...+.-..-.+.+++...+.. +. ++..|.+=++++++-.|-.|.++|+++...+-
T Consensus 69 lf~~v~kl~~------s~d~~lKrLvYLyl~~~~~~~~e~--iL----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m 136 (355)
T 3tjz_B 69 AFFAMTKLFQ------SNDPTLRRMCYLTIKEMSCIAEDV--II----VTSSLTKDMTGKEDSYRGPAVRALCQITDSTM 136 (355)
T ss_dssp HHHHHHGGGG------CCCHHHHHHHHHHHHHHTTTSSCG--GG----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT
T ss_pred HHHHHHHHhc------CCCHHHHHHHHHHHHHhCCCHHHH--HH----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH
Confidence 3444566777 667888888888888887764332 21 46668888899999999999999999976442
Q ss_pred chhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC
Q 012404 295 NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN 372 (464)
Q Consensus 295 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~ 372 (464)
. ....+.+...|.+.++-+++.|+.+.+.|...... +++ +.+..+-+++.+. .++-+|+.+|..++..
T Consensus 137 -~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 137 -L-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp -H-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred -H-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 1 12456677788888999999999999999865432 333 5788888988865 5778899999999875
Q ss_pred HHHHHHHHhcCcHHHHHHHHhccC--ChhHHHHHHHHHHHHhccC-hhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHH
Q 012404 373 HRAVEEIGDLGGVSCMLRIIREST--CDRNKENCIAILHTICLSD-RTKWKAMREEESTHGTISKLAQDGTARAKRKATG 449 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~A~~~L~~L~~~~-~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~ 449 (464)
+.. ++..|+..+..+. ++..+-.-++.+..++..+ ++. ....++.|..++++.++.+.-.|+.
T Consensus 207 d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~------~~~~~~~l~~~L~~~~~aVvyEa~k 272 (355)
T 3tjz_B 207 DRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR------DSPLFDFIESCLRNKHEMVVYEAAS 272 (355)
T ss_dssp CHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------CCCCCSSHHHHHHHHH
T ss_pred chH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh------HHHHHHHHHHHHcCCChHHHHHHHH
Confidence 311 2344454444321 2444444444433333332 111 1345556666667777776666666
Q ss_pred HHHHHhc
Q 012404 450 ILERLKR 456 (464)
Q Consensus 450 ~L~~l~~ 456 (464)
.+-.+..
T Consensus 273 ~I~~l~~ 279 (355)
T 3tjz_B 273 AIVNLPG 279 (355)
T ss_dssp HHTC---
T ss_pred HHHhccC
Confidence 6555543
No 154
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.48 Score=41.26 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=37.9
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccC-CHHHHHHHHHHHHHhcc
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEG-HQSAMKDVASAIFNLCI 332 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~al~aL~~L~~ 332 (464)
++..++.+|...-..++.+|...|..++..- +... -.+..|+-+++.. .......-++++..++.
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e-----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~ 99 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK 99 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH-----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhcccCchHHHHHHHHhHHHH
Confidence 5666777777777778888888888777542 2111 1234455555432 44454555555555543
No 155
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.80 E-value=0.008 Score=44.38 Aligned_cols=47 Identities=15% Similarity=0.425 Sum_probs=37.2
Q ss_pred ccCccchhhccCcccC-CCCccccHHHHHHHHHcC-CCCCCCCcccccC
Q 012404 84 FKCPLSKELMRDPVIL-ASGQTFDRPYIQRWLKAG-NRTCPRTQQVLSH 130 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~-~~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~ 130 (464)
-.|+||.+++..=+.- .|||.|=..||.+||... ..+||.+++++..
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4699999887643333 589999999999999763 3789999988653
No 156
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.66 E-value=0.0073 Score=46.68 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=37.5
Q ss_pred cCccchhhccCc-ccCCCCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 85 KCPLSKELMRDP-VILASGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 85 ~CPi~~~~m~dP-v~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
.||+|.-....= -++||+|.||-.|+..|..+++.+||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 477777666543 379999999999999999887899999998864
No 157
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.61 E-value=0.15 Score=56.55 Aligned_cols=218 Identities=13% Similarity=0.081 Sum_probs=125.8
Q ss_pred ChhhHHHHHHHHHccccCcchHHHHhc----CCCChHH----HHHHHhcC---CHHHHHHHHHHHHHhcccCcchhhhcc
Q 012404 233 NPNLQEDVITTLLNLSIHDNNKKLVAE----TPMVIPL----LMDALRSG---TIETRSNAAAALFTLSALDSNKEVIGK 301 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~----~~~~i~~----Lv~lL~~~---~~~~~~~aa~~L~~Ls~~~~~~~~i~~ 301 (464)
+...++.|+.++..++.+......-.. ...+.+. ++..|.+. ++-+|..++++|..++..- .... -
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l 494 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--L 494 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--H
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--H
Confidence 457888888888888653211000000 0023332 23334555 7899999999999998642 1111 2
Q ss_pred cCchHHHHHhcccCCHHHHHHHHHHHHHhccCch---------hhhHHHh--cCcHHHHHHHHcCC-------chHHHHH
Q 012404 302 SGALKPLIDLLDEGHQSAMKDVASAIFNLCITHE---------NKARAVR--DGGVSVILKKIMDG-------VHVDELL 363 (464)
Q Consensus 302 ~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~---------~~~~iv~--~g~v~~Lv~lL~~~-------~~~~~a~ 363 (464)
..+++.++..|.+.++.++..|+.||.+++...+ .+..+.. ...++.|+.++... ...+.++
T Consensus 495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~ 574 (960)
T 1wa5_C 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM 574 (960)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHH
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHH
Confidence 3467788888887789999999999999987421 2333322 14556666666653 1345667
Q ss_pred HHHHHhhCC-HHHHHHHHhcCcHHHHHHHHhc----cCChhHHHHHHHHHHHHhcc-ChhhHHHHHHhhccHHHHHHHhh
Q 012404 364 AILAMLSTN-HRAVEEIGDLGGVSCMLRIIRE----STCDRNKENCIAILHTICLS-DRTKWKAMREEESTHGTISKLAQ 437 (464)
Q Consensus 364 ~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~A~~~L~~L~~~-~~~~~~~~~~~~g~~~~L~~Ll~ 437 (464)
.+|..++.. .+....... ..++.|+..+.. ..+......+..+|..+... .++....+. ....+.+..+++
T Consensus 575 ~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~ 651 (960)
T 1wa5_C 575 RSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVFS 651 (960)
T ss_dssp HHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHH
Confidence 777666542 111101111 133444444432 23345555678888877775 334433333 467788888887
Q ss_pred cCCHHHHHHHHHHHHHHhc
Q 012404 438 DGTARAKRKATGILERLKR 456 (464)
Q Consensus 438 ~g~~~~k~~A~~~L~~l~~ 456 (464)
.......+-+..++..+-+
T Consensus 652 ~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 652 EDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp TTCTTTHHHHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHHHHHHH
Confidence 7655555666666665543
No 158
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.59 E-value=0.013 Score=41.41 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=38.7
Q ss_pred CcccCccchhhccCcccCCCC--c---cccHHHHHHHHHc-CCCCCCCCccccc
Q 012404 82 EEFKCPLSKELMRDPVILASG--Q---TFDRPYIQRWLKA-GNRTCPRTQQVLS 129 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~~~~g--~---~~~r~~I~~~~~~-~~~~~P~~~~~l~ 129 (464)
+.-.|.|+.+-..+|.+.||. + .|=+.++++|+.. ++.+||+++.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 355799998877888888964 2 5799999999974 5678999998875
No 159
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.03 E-value=0.73 Score=42.20 Aligned_cols=208 Identities=13% Similarity=0.129 Sum_probs=130.1
Q ss_pred hHHHHHHhhcCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhh-hcccccccCCC-----ChhhHHHHHHHHHc
Q 012404 173 HFLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLS-PLSESKCENGI-----NPNLQEDVITTLLN 246 (464)
Q Consensus 173 ~i~~Lv~~Ls~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~-lL~~~~~~~~~-----~~~~~~~A~~~L~~ 246 (464)
.+..++..|.. ++.++.|+..|..--...++.--.+-.+.|.+..|+. +++-+..-..+ ...-..+|+..|..
T Consensus 4 ~i~qli~~L~~-p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 4 KIYQWINELSS-PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHHTSS-TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 34455555543 4567777655554333233333344444676666642 22111100000 12345678888888
Q ss_pred cccCcchHHHHhcCCCChHHHHHHHhcCC-----HHHHHHHHHHHHHhcccCcc--hhhhcccCchHHHHHhcccCCHHH
Q 012404 247 LSIHDNNKKLVAETPMVIPLLMDALRSGT-----IETRSNAAAALFTLSALDSN--KEVIGKSGALKPLIDLLDEGHQSA 319 (464)
Q Consensus 247 Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~ 319 (464)
++.+++.+..+..++ +.--|-.+|...+ .-.|-.+.++++.|...++. -..+.+.+.||..+..+..|+.-.
T Consensus 83 vAshpetr~~Fl~a~-iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 83 VASHPETRSAFLAAH-IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHCTTTHHHHHHTT-GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHcCcchhhHHHHcc-chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 899999999999875 3333455565442 45788999999999987643 223446789999999999999888
Q ss_pred HHHHHHHHHHhccCchhhhHHHhc--------CcHHHHHHHHc-CC--chHHHHHHHHHHhhCCHHHHHHHHhc
Q 012404 320 MKDVASAIFNLCITHENKARAVRD--------GGVSVILKKIM-DG--VHVDELLAILAMLSTNHRAVEEIGDL 382 (464)
Q Consensus 320 ~~~al~aL~~L~~~~~~~~~iv~~--------g~v~~Lv~lL~-~~--~~~~~a~~~L~~L~~~~~~~~~i~~~ 382 (464)
+.-|.-.+..+-.++.+-.-+... .++..+|.-+. ++ .+..+.+.+-..|+.++..++++...
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 888888888777666544333221 23333444333 22 57788999999999999988887643
No 160
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.74 E-value=0.5 Score=43.30 Aligned_cols=139 Identities=10% Similarity=0.098 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHhccCchh-hhHHH-hcCcHHHHHHHHc------CC--------chHHHHHHHHHHhhCCHHHHHHH
Q 012404 316 HQSAMKDVASAIFNLCITHEN-KARAV-RDGGVSVILKKIM------DG--------VHVDELLAILAMLSTNHRAVEEI 379 (464)
Q Consensus 316 ~~~~~~~al~aL~~L~~~~~~-~~~iv-~~g~v~~Lv~lL~------~~--------~~~~~a~~~L~~L~~~~~~~~~i 379 (464)
+++.++.|+.-|..=-..-++ ...+- ..|.+..|++-+- ++ +-.-+|++.|..++++++.|..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 455677666554432111112 22233 3488887766442 11 12456888899999999999999
Q ss_pred HhcCcHHHHHHHHhccCC----hhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 012404 380 GDLGGVSCMLRIIRESTC----DRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERL 454 (464)
Q Consensus 380 ~~~g~i~~Lv~ll~~~~~----~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l 454 (464)
.+++..--|.-+|...+. +..+-.+++++..|...+....-....+..+++...+.++.|++..|.-|..|+..+
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999876556667765321 456677999999999876655555555688999999999999999999999999865
No 161
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.30 E-value=0.87 Score=43.22 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=93.1
Q ss_pred HHHhccc-CCHHHHHHHHHHHHHhccCchhhhHHHhc--CcHHHHHHHHcCC--chHHHHHHHHHHhhCCH------HHH
Q 012404 308 LIDLLDE-GHQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIMDG--VHVDELLAILAMLSTNH------RAV 376 (464)
Q Consensus 308 Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~~~iv~~--g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~------~~~ 376 (464)
+...+.. ..+..+--+++++.|+-.+..++..+... .+++.+...+.+. .++..++.++.|++..- +.+
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~ 231 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK 231 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH
Confidence 3344433 35667888999999999999888877653 2344444433332 67778888999998631 111
Q ss_pred HHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 012404 377 EEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILER 453 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~-g~~~~k~~A~~~L~~ 453 (464)
.. .+..+..+++...+.++.-.++-+|.+|..... ..+++.+..++.+.+-++... ...++.+.|..+|..
T Consensus 232 ~~-----ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~-~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 232 AQ-----CLSLISTILEVVQDLEATFRLLVALGTLISDDS-NAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCh-hHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 11 344455666654567888888899999987654 456666666777777777766 366788888887753
No 162
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.21 E-value=0.007 Score=57.75 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=38.0
Q ss_pred cccCccchhhccC----ccc----CCCCccccHHHHHHHHHcCC----------CCCCCCcccccC
Q 012404 83 EFKCPLSKELMRD----PVI----LASGQTFDRPYIQRWLKAGN----------RTCPRTQQVLSH 130 (464)
Q Consensus 83 ~f~CPi~~~~m~d----Pv~----~~~g~~~~r~~I~~~~~~~~----------~~~P~~~~~l~~ 130 (464)
..-|+||...+.+ |.. .+|||.|-..||.+|+.... ++||+|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3469999999887 543 35899999999999997421 469999998763
No 163
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.04 Score=53.30 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=50.9
Q ss_pred cccCccchhhccCccc-CCCCcc--ccHHHHHHHHHc-CCCCCCCCcccccCCCCcchHHHHHHHH
Q 012404 83 EFKCPLSKELMRDPVI-LASGQT--FDRPYIQRWLKA-GNRTCPRTQQVLSHTILTPNHLIREMIS 144 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~-~~~g~~--~~r~~I~~~~~~-~~~~~P~~~~~l~~~~l~~n~~lk~~i~ 144 (464)
.+.|||++..|..|+- ..|.|. ||...+.+.... +.-.||+|..++..++|..+.-+.+.++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 5899999999999996 558887 998888776553 3457999999999999998887777654
No 164
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.76 E-value=1.6 Score=48.19 Aligned_cols=174 Identities=9% Similarity=-0.009 Sum_probs=105.6
Q ss_pred hcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc---ccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHH
Q 012404 272 RSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL---DEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSV 348 (464)
Q Consensus 272 ~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~ 348 (464)
.+.+...++.++.+|..++..-... ....++.++..+ ..+++.++..++++|..++..-........ .+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHH
Confidence 3446788999999999988643211 122344455544 224788999999999998864322222322 67888
Q ss_pred HHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHHHhccC-ChhHHHHHHHHHHHHhccCh-hhHHHHHH
Q 012404 349 ILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIREST-CDRNKENCIAILHTICLSDR-TKWKAMRE 424 (464)
Q Consensus 349 Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~~-~~~~~~~A~~~L~~L~~~~~-~~~~~~~~ 424 (464)
|+..|.++.++..|+.+|..+|.. .+..+... ..+..|..++..+. +...+..+..++..+....+ +.....+
T Consensus 534 l~~~l~~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~- 610 (963)
T 2x19_B 534 VLHALGNPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL- 610 (963)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-
T ss_pred HHHHhCCchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 888887778999999999999942 22222211 23444555665422 36788888999998886553 4433333
Q ss_pred hhccHHHHHHHh----hcC-CHHHHHHHHHHHHHH
Q 012404 425 EESTHGTISKLA----QDG-TARAKRKATGILERL 454 (464)
Q Consensus 425 ~~g~~~~L~~Ll----~~g-~~~~k~~A~~~L~~l 454 (464)
...++++...+ +.. ++..+......+..+
T Consensus 611 -~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 611 -HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp -HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 24555444433 233 555655544444444
No 165
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.60 E-value=0.7 Score=43.86 Aligned_cols=173 Identities=13% Similarity=0.095 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHccccCcchHHHHhcCCCChHHHH----HHHh-cCCHHHHHHHHHHHHHhcccCcchhhhccc--CchHH
Q 012404 235 NLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLM----DALR-SGTIETRSNAAAALFTLSALDSNKEVIGKS--GALKP 307 (464)
Q Consensus 235 ~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv----~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~ 307 (464)
+.+--++..++-+..++.....+....+. ..++ ..+. .+++..+.-+++++.|+-.+...+..+... .+++.
T Consensus 117 ~~~fPvLDLlRl~~l~p~~~~~~~~~~~~-~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~ 195 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPSVNENFCNEKEG-AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSH 195 (304)
T ss_dssp TTCHHHHHHHHHHTTSHHHHHHHHSTTTH-HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHH
T ss_pred HhHHHHHHHHHHHHcCccHHHHhhccccc-hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 44444555555555544433333332221 2222 2222 235667889999999998887777665542 34455
Q ss_pred HHHhcccCCHHHHHHHHHHHHHhccCchhhhHHH-hcCcHHHHHHHHcC---CchHHHHHHHHHHhhCCHHHHHHHHh-c
Q 012404 308 LIDLLDEGHQSAMKDVASAIFNLCITHENKARAV-RDGGVSVILKKIMD---GVHVDELLAILAMLSTNHRAVEEIGD-L 382 (464)
Q Consensus 308 Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv-~~g~v~~Lv~lL~~---~~~~~~a~~~L~~L~~~~~~~~~i~~-~ 382 (464)
+...+...+..++..++.+++|++...-.....- ...++..+..++.. .+..-.++.+|.+|...+.....+.+ .
T Consensus 196 ~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l 275 (304)
T 3ebb_A 196 AIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSL 275 (304)
T ss_dssp HHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHc
Confidence 5555555688899999999999987532111110 11134444445543 26777789999999986444444443 3
Q ss_pred CcHHHHHHHHhccCChhHHHHHHHHH
Q 012404 383 GGVSCMLRIIRESTCDRNKENCIAIL 408 (464)
Q Consensus 383 g~i~~Lv~ll~~~~~~~~~~~A~~~L 408 (464)
|....+-++...+.+.++.+.|..+|
T Consensus 276 ~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 276 GVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp THHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 43333334444334456656555444
No 166
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.51 E-value=1.6 Score=40.45 Aligned_cols=186 Identities=10% Similarity=0.118 Sum_probs=116.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhcccCc---chh-hhccc-CchHHHHHhcccCCHHHHHHHHHHHHHhccCch---
Q 012404 264 IPLLMDALRSGTIETRSNAAAALFTLSALDS---NKE-VIGKS-GALKPLIDLLDEGHQSAMKDVASAIFNLCITHE--- 335 (464)
Q Consensus 264 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~---~~~-~i~~~-g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~--- 335 (464)
+| |-+-|.+.+-..|..|...|..+..... ... .+... ..++.+-..+.+.+..++..++.+|..++..-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 55 5677888899999999998887654321 111 11122 345666778887899999999999988875321
Q ss_pred h-hhH--HHhcCcHHHHHHH-HcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHH
Q 012404 336 N-KAR--AVRDGGVSVILKK-IMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILH 409 (464)
Q Consensus 336 ~-~~~--iv~~g~v~~Lv~l-L~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~ 409 (464)
. +.. ..-...+|.|++- |.+. .++..|..+|..++........ .+..++..+.+. ++.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~K-npkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKK-LPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCS-CHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence 1 111 2223568888875 5655 4677777777766532111011 123344445544 5888888888888
Q ss_pred HHhccC-hh--hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 410 TICLSD-RT--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 410 ~L~~~~-~~--~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
.+.... .. ..+..+ ..+++.+.+++.+.++.++..|..++--+-+.-
T Consensus 165 ~~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 765431 11 112222 245667888899999999999999987776543
No 167
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.72 Score=42.88 Aligned_cols=185 Identities=14% Similarity=0.129 Sum_probs=108.0
Q ss_pred HHHhhc-CCchhHHHHHHHHHHHhhcCchhh--hh-hhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcc
Q 012404 177 LLKKMS-ATLPDQTEAAKELRLLTKRMPSFR--AL-FGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDN 252 (464)
Q Consensus 177 Lv~~Ls-~~~~~~~~a~~~L~~L~~~~~~~r--~~-i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~ 252 (464)
+-+.|. ++...|.+|+..|..+....+... .. +......++.+-..+. +.+..++..++.+|..+...-.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~------DsN~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT------DSNVVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT------CSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHhh
Confidence 445664 458899999999988765332211 11 1110123344445555 5578888998888877643211
Q ss_pred ----hHHHH-hcCCCChHHHHHH-HhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHH
Q 012404 253 ----NKKLV-AETPMVIPLLMDA-LRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASA 326 (464)
Q Consensus 253 ----~~~~i-~~~~~~i~~Lv~l-L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~a 326 (464)
.+... .....++|.|+.= |.++...++..+..++..+......... +++.++..+...++.++..++..
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~ 162 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANC 162 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHH
Confidence 11111 1111356766653 5666788888888888877643322222 24666777777899999999999
Q ss_pred HHHhccCchhh---hHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCC
Q 012404 327 IFNLCITHENK---ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTN 372 (464)
Q Consensus 327 L~~L~~~~~~~---~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~ 372 (464)
|..+...-..+ ....-..+++.+..++.+. .+++.|..++..+-..
T Consensus 163 l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 98775431111 1111112445566677654 7888888888877653
No 168
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.37 E-value=0.71 Score=47.21 Aligned_cols=245 Identities=12% Similarity=0.076 Sum_probs=151.9
Q ss_pred HHHHHHhh-cCCchhHHHHHHHHHHHhhcCchh--hhhhhhcCCchhhhhhhc--ccccccC--CCChhhHHHHHHHHHc
Q 012404 174 FLSLLKKM-SATLPDQTEAAKELRLLTKRMPSF--RALFGESHDAIPQLLSPL--SESKCEN--GINPNLQEDVITTLLN 246 (464)
Q Consensus 174 i~~Lv~~L-s~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~~g~i~~Lv~lL--~~~~~~~--~~~~~~~~~A~~~L~~ 246 (464)
.+.|+..| +...+.|--|+-.|+.+.+..... |..-.+ .+..-.|+.+| .+..+-. ..-..++|.++.+|..
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N-~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVD-SKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCC-TTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceecccc-HHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 34555555 556888888999999988755321 111111 13333444333 2222111 1224578888888877
Q ss_pred cccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhc-ccCchHHHHHhcccCCHHHHHHHHH
Q 012404 247 LSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIG-KSGALKPLIDLLDEGHQSAMKDVAS 325 (464)
Q Consensus 247 Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~al~ 325 (464)
+ .+-+.. ..++..|+..+..+.-+++..+.-.|..+ +..+. -.++++.++..|.+.+.+++..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 7 443222 12455555555677899999999999988 22222 2567888888888889999999999
Q ss_pred HHHHhccCchhhhHHHhcCcHHHHHHHHcC--C--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHH
Q 012404 326 AIFNLCITHENKARAVRDGGVSVILKKIMD--G--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNK 401 (464)
Q Consensus 326 aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~--~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 401 (464)
+|.-++ .++.- ..++..+.+.|.+ + ......+..|+.|++.+.. +-.....+|.|.-++++.- ..++
T Consensus 322 tLiPIA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtI-TSVR 392 (800)
T 3oc3_A 322 LLCHFP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPV-PEVR 392 (800)
T ss_dssp HHTTSC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSS-HHHH
T ss_pred Hhhhhc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCc-HHHH
Confidence 999988 11111 1245556666654 2 4577788888998887631 1112256888999999764 8899
Q ss_pred HHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHH
Q 012404 402 ENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILE 452 (464)
Q Consensus 402 ~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~ 452 (464)
..++.+|..+. .. .+++ -.++.++-..++.+.+.+..+-+
T Consensus 393 ~AVL~TL~tfL--~~----~~LR-----LIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS--EE----SIDF-----LVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC--CH----HHHH-----HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hh----hHHH-----HHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999997766 11 1111 23445566667777777766654
No 169
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.62 E-value=0.092 Score=50.64 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=51.3
Q ss_pred CcccCccchhhccCccc-CCCCcc--ccHHHHHHHHHc-CCCCCCCCcccccCCCCcchHHHHHHHH
Q 012404 82 EEFKCPLSKELMRDPVI-LASGQT--FDRPYIQRWLKA-GNRTCPRTQQVLSHTILTPNHLIREMIS 144 (464)
Q Consensus 82 ~~f~CPi~~~~m~dPv~-~~~g~~--~~r~~I~~~~~~-~~~~~P~~~~~l~~~~l~~n~~lk~~i~ 144 (464)
-.+.|||++..|+.|+- ..|.|. ||...+-+.... +.-.||+|++++..++|..+.-+.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 35789999999999996 558887 998888777654 3457999999999999998877777664
No 170
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.38 E-value=3.7 Score=45.27 Aligned_cols=172 Identities=6% Similarity=0.020 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc---c--cCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHH
Q 012404 274 GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL---D--EGHQSAMKDVASAIFNLCITHENKARAVRDGGVSV 348 (464)
Q Consensus 274 ~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~ 348 (464)
.+...++.+..+|..++..-.... ...++.++.++ . +.++.++..++++|..++..-........ .+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHH
Confidence 456788899989988876432111 12334444433 2 23788999999999998854221111111 35667
Q ss_pred HHHHHcCCchHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHHHhcc-CChhHHHHHHHHHHHHhccCh-hhHHHHHH
Q 012404 349 ILKKIMDGVHVDELLAILAMLSTNHRAVEEIGDL--GGVSCMLRIIRES-TCDRNKENCIAILHTICLSDR-TKWKAMRE 424 (464)
Q Consensus 349 Lv~lL~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~-~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~ 424 (464)
|+..|. +.++..|+.+|.++|.. .+..+... ..+..|..++..+ .+...+..+..++..+....+ +.....+
T Consensus 551 l~~~l~-~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~- 626 (971)
T 2x1g_F 551 LVRGLN-SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL- 626 (971)
T ss_dssp HHHHHH-SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-
T ss_pred HHHHhC-hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-
Confidence 777674 78999999999999942 33334322 3456666777753 236788889999998876532 3323333
Q ss_pred hhccHHHHHH----HhhcC--CHHHHHHHHHHHHHHh
Q 012404 425 EESTHGTISK----LAQDG--TARAKRKATGILERLK 455 (464)
Q Consensus 425 ~~g~~~~L~~----Ll~~g--~~~~k~~A~~~L~~l~ 455 (464)
...++++.. +++.. ++..+......|..++
T Consensus 627 -~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 627 -DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp -HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 133343333 33333 3444555555555554
No 171
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.18 E-value=3.3 Score=45.73 Aligned_cols=172 Identities=9% Similarity=0.016 Sum_probs=97.6
Q ss_pred hHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh------cCCHHHHHHHHHHHHHhcccCcchhhhcc-----cCc
Q 012404 236 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR------SGTIETRSNAAAALFTLSALDSNKEVIGK-----SGA 304 (464)
Q Consensus 236 ~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~------~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-----~g~ 304 (464)
.+..|...|..|+..-. ..+.. .+++.+...+. +.+...+++|..++..++.....+..-.. ...
T Consensus 377 ~R~aa~~~L~~l~~~~~--~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE--VLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp HHHHHHHHHHHHHHHCH--HHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cHHHHHHHHHHHHHHcc--hhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 45556666666654432 22221 13444445555 44667889999999999754221111000 023
Q ss_pred hHHH----HHhcccC---CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCH--
Q 012404 305 LKPL----IDLLDEG---HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDG--VHVDELLAILAMLSTNH-- 373 (464)
Q Consensus 305 i~~L----v~lL~~~---~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~-- 373 (464)
.+.+ +..|.+. ++-++..|+++|..++..-. ... -..+++.++..|.++ .++..|+.+|.+++...
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence 3333 3334555 78899999999999987521 111 224677888888765 57899999999998742
Q ss_pred ------H-HHHHHHhc--CcHHHHHHHHhccC--Chh--HHHHHHHHHHHHhcc
Q 012404 374 ------R-AVEEIGDL--GGVSCMLRIIREST--CDR--NKENCIAILHTICLS 414 (464)
Q Consensus 374 ------~-~~~~i~~~--g~i~~Lv~ll~~~~--~~~--~~~~A~~~L~~L~~~ 414 (464)
+ .+..+... ..+..|+.++.... ... ..+.+..+|..++..
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQT 583 (960)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH
T ss_pred cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHH
Confidence 1 12223211 34566666776531 011 346677777766553
No 172
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.91 E-value=0.062 Score=42.06 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=28.9
Q ss_pred CcccCccchhh-ccCccc--CCCCccccHHHHHHHH
Q 012404 82 EEFKCPLSKEL-MRDPVI--LASGQTFDRPYIQRWL 114 (464)
Q Consensus 82 ~~f~CPi~~~~-m~dPv~--~~~g~~~~r~~I~~~~ 114 (464)
++..|+|+.+. ..+||. ++||++|++.+++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46889999964 899998 9999999999999843
No 173
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=91.67 E-value=0.11 Score=39.88 Aligned_cols=58 Identities=21% Similarity=0.464 Sum_probs=44.7
Q ss_pred cCCCC-CCcccCccchhhccCcccCCCCc------cccHHHHHHHHHcCCCCCCCCcccccCCCCc
Q 012404 76 ETVSC-PEEFKCPLSKELMRDPVILASGQ------TFDRPYIQRWLKAGNRTCPRTQQVLSHTILT 134 (464)
Q Consensus 76 ~~~~~-p~~f~CPi~~~~m~dPv~~~~g~------~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l~ 134 (464)
+.+.- +++++||||.++-..-|++.++. -||..++.+-... +..=|.+|+|++..+.+
T Consensus 19 ~~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~-~~~HPLSREpit~sMIv 83 (102)
T 2kkx_A 19 ERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGE-GLPHPLTREPITASIIV 83 (102)
T ss_dssp TTTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHH-TCCCTTTCCCCCTTTEE
T ss_pred hhccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhc-CCCCCCccCCCCHhhEe
Confidence 33444 44678999999999999876431 4899999999887 45679999999887654
No 174
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.62 E-value=1.5 Score=43.15 Aligned_cols=144 Identities=10% Similarity=0.149 Sum_probs=96.0
Q ss_pred cCchHHHHHhccc-----------CCHHHHHHHHHHHHHhccCchhhhHHHhc-CcHHHHHHHHcCC--chHHHHHHHHH
Q 012404 302 SGALKPLIDLLDE-----------GHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILA 367 (464)
Q Consensus 302 ~g~i~~Lv~lL~~-----------~~~~~~~~al~aL~~L~~~~~~~~~iv~~-g~v~~Lv~lL~~~--~~~~~a~~~L~ 367 (464)
.+++..|+.+|.. .+......++.+|..|.-+..+...++.. ..+..|+..|.+. .++..++.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5567777777642 13466778899999998888888878765 7789999888765 56777999999
Q ss_pred HhhCCHH---HHHHHHhc----------CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh-----hHHHHHHhhccH
Q 012404 368 MLSTNHR---AVEEIGDL----------GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-----KWKAMREEESTH 429 (464)
Q Consensus 368 ~L~~~~~---~~~~i~~~----------g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~-----~~~~~~~~~g~~ 429 (464)
.+|..++ +...+.++ .-...++..++...+...+..+...+..+....++ ..+.-+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9997643 34444322 23666788887644466777777777777665542 112223357888
Q ss_pred HHHHHHhhcCCHHHHH
Q 012404 430 GTISKLAQDGTARAKR 445 (464)
Q Consensus 430 ~~L~~Ll~~g~~~~k~ 445 (464)
+.+.++-..+++.+..
T Consensus 268 ~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 268 QVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHHHTTSCCHHHHH
T ss_pred HHHHHHhcCCChhHHH
Confidence 8888876555554433
No 175
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.27 E-value=3.2 Score=37.58 Aligned_cols=82 Identities=23% Similarity=0.211 Sum_probs=60.8
Q ss_pred CCchhhhhhhcccccccC-----CCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 012404 213 HDAIPQLLSPLSESKCEN-----GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF 287 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~-----~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~ 287 (464)
.+|+..|+..|....... ..+...+...+..|..+.........+...+.++..|+..|.+.++.++..++..|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 478888888886432100 113456677888888887777666677777778898999898889999999999998
Q ss_pred HhcccCc
Q 012404 288 TLSALDS 294 (464)
Q Consensus 288 ~Ls~~~~ 294 (464)
.++..++
T Consensus 122 ~lc~~~~ 128 (233)
T 2f31_A 122 ALCILPQ 128 (233)
T ss_dssp HHHTCSS
T ss_pred HHHhCCC
Confidence 8887653
No 176
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.07 E-value=1.7 Score=39.44 Aligned_cols=148 Identities=10% Similarity=0.138 Sum_probs=96.7
Q ss_pred cCchHHHHHhccc-----------CCHHHHHHHHHHHHHhccCchhhhHHHhc-CcHHHHHHHHcCC--chHHHHHHHHH
Q 012404 302 SGALKPLIDLLDE-----------GHQSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILA 367 (464)
Q Consensus 302 ~g~i~~Lv~lL~~-----------~~~~~~~~al~aL~~L~~~~~~~~~iv~~-g~v~~Lv~lL~~~--~~~~~a~~~L~ 367 (464)
.|++..|+++|.. .+......++.+|..|.....+...++.. +++..|...|.++ .++..++.+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3555566665532 13456778999999999888877777765 6788888888765 56677899999
Q ss_pred HhhCCHH--H-HHHHHhc----------CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh-----hHHHHHHhhccH
Q 012404 368 MLSTNHR--A-VEEIGDL----------GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-----KWKAMREEESTH 429 (464)
Q Consensus 368 ~L~~~~~--~-~~~i~~~----------g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~-----~~~~~~~~~g~~ 429 (464)
.+|..++ | ...+.++ .-...+++.++.+.....+..+...+..+....++ ..+.-+...|..
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 201 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 201 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9997643 5 4443322 13555777776544456666666666666665542 122223357888
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q 012404 430 GTISKLAQDGTARAKRKATG 449 (464)
Q Consensus 430 ~~L~~Ll~~g~~~~k~~A~~ 449 (464)
+.+.++-..+++.+..+-..
T Consensus 202 ~il~~l~~~~~~~L~~Qi~~ 221 (233)
T 2f31_A 202 QVLQELREIENEDMKVQLCV 221 (233)
T ss_dssp HHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHH
Confidence 88888877777776655443
No 177
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.26 E-value=1.8 Score=43.36 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=75.8
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcch
Q 012404 174 FLSLLKKMSATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNN 253 (464)
Q Consensus 174 i~~Lv~~Ls~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~ 253 (464)
...++...+++...+.-|+.-|....+..|+... .+|..++++.. ++|..++..|+..|-.++.+ ++
T Consensus 31 y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcE------Ded~~IR~qaik~Lp~~ck~-~~ 97 (507)
T 3u0r_A 31 YQVILDGVKGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCE------DEDVSIRRQAIKELPQFATG-EN 97 (507)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHT------CSSHHHHHHHHHHGGGGCCT-TC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHh------cccHHHHHHHHHhhHHHhhh-hh
Confidence 4556666677778888899999998888887753 46778999998 67889999999999999988 44
Q ss_pred HHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccC
Q 012404 254 KKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALD 293 (464)
Q Consensus 254 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~ 293 (464)
... +...|+++|...++......-.+|..|...+
T Consensus 98 i~k------iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D 131 (507)
T 3u0r_A 98 LPR------VADILTQLLQTDDSAEFNLVNNALLSIFKMD 131 (507)
T ss_dssp HHH------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred hhh------HHHHHHHHHhccchHHHHHHHHHHHHHHhcC
Confidence 333 3455888998887766666666666665444
No 178
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.45 E-value=1.6 Score=40.45 Aligned_cols=171 Identities=12% Similarity=0.066 Sum_probs=101.5
Q ss_pred cCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCc-hhhhhhhcccccccCCCChhhHHHHHHHHHccc---cCcchHHHH
Q 012404 182 SATLPDQTEAAKELRLLTKRMPSFRALFGESHDA-IPQLLSPLSESKCENGINPNLQEDVITTLLNLS---IHDNNKKLV 257 (464)
Q Consensus 182 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls---~~~~~~~~i 257 (464)
+.+...+.+|+..|......++ +.+....+. +..+.-.+. +.+..+...++.+|..+. ...+.+-.-
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~---~~~~~~lDll~kw~~lr~~------d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSP---RSLLSNSDLLLKWCTLRFF------ETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCH---HHHHHTHHHHHHHHHHHTT------SCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred CCCHHHHHHHHHHHHHHhhhCh---HHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 4456667777777776554332 222221111 222221222 336677777777666552 111111111
Q ss_pred hcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhh
Q 012404 258 AETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENK 337 (464)
Q Consensus 258 ~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~ 337 (464)
.+...++|.|+.-+-.+...+|..+-.+|..+... ..-..+++.+++-+.+.+..++..++..|..+-......
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11123788888777666778888888777766532 122335677888888889999999999998885443221
Q ss_pred hHHHhcCcH---HHHHHHHcCC--chHHHHHHHHHHhhC
Q 012404 338 ARAVRDGGV---SVILKKIMDG--VHVDELLAILAMLST 371 (464)
Q Consensus 338 ~~iv~~g~v---~~Lv~lL~~~--~~~~~a~~~L~~L~~ 371 (464)
...++ |.+.+++.+. .+++.|+.++..+-.
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 23467 9999999875 678888888775543
No 179
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.64 E-value=7.1 Score=38.18 Aligned_cols=142 Identities=21% Similarity=0.203 Sum_probs=97.2
Q ss_pred CCchhhhhhhccccccc-----CCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 012404 213 HDAIPQLLSPLSESKCE-----NGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF 287 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~-----~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~ 287 (464)
.+|+..|+.+|..-... ...+...+...+.+|..+.........+...+..+..|+..|.+.++.++..++..|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 36788888888532110 0124466777888888888777777777777888999999999999999999999998
Q ss_pred HhcccCc--c-hhhhc----------ccCchHHHHHhccc-CCHHHHHHHHHHHHHhccCch---h----hhHHHhcCcH
Q 012404 288 TLSALDS--N-KEVIG----------KSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHE---N----KARAVRDGGV 346 (464)
Q Consensus 288 ~Ls~~~~--~-~~~i~----------~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~---~----~~~iv~~g~v 346 (464)
.+|..++ + ...+. +..-+..++..|.. .+.+.+..++..|-.+....+ . |..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 8887653 2 22222 24567888999987 477777777777777766543 2 3344455665
Q ss_pred HHHHHHHcC
Q 012404 347 SVILKKIMD 355 (464)
Q Consensus 347 ~~Lv~lL~~ 355 (464)
+.+-+ |..
T Consensus 268 ~il~~-lr~ 275 (383)
T 3eg5_B 268 QVLQE-LRE 275 (383)
T ss_dssp HHHHH-HTT
T ss_pred HHHHH-Hhc
Confidence 55544 553
No 180
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.07 E-value=12 Score=40.93 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=121.0
Q ss_pred CCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHH---hcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchH
Q 012404 231 GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL---RSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALK 306 (464)
Q Consensus 231 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL---~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~ 306 (464)
+.+...++.++.++..++.+-... ....++.++..+ ..+++.++..++++|..++.. ..+...+ ..+++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~ 532 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLP 532 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHH
Confidence 346778888999988887653210 112455555554 234688999999999988753 2222222 36788
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHh--cCcHHHHHHHHcCC----chHHHHHHHHHHhhCC--HHHHHH
Q 012404 307 PLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMDG----VHVDELLAILAMLSTN--HRAVEE 378 (464)
Q Consensus 307 ~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~--~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~--~~~~~~ 378 (464)
.|+..|.+ +.++..|+.+|.++|.. .+..+.. ...+..|..++..+ ..+..++.++..++.. ++....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88888854 78999999999999953 2222322 13444555555542 4566677788887753 244443
Q ss_pred HHhcCcHHHHHHHHh----ccCChhHHHH---HHHHHHHHhccCh----------------------hhHHHHHHhhccH
Q 012404 379 IGDLGGVSCMLRIIR----ESTCDRNKEN---CIAILHTICLSDR----------------------TKWKAMREEESTH 429 (464)
Q Consensus 379 i~~~g~i~~Lv~ll~----~~~~~~~~~~---A~~~L~~L~~~~~----------------------~~~~~~~~~~g~~ 429 (464)
..+. .++.+...+. ...++..+.. ...+|..+...-. .....+. ....
T Consensus 609 ~~~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 685 (963)
T 2x19_B 609 NLHS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL--QQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH--HHHH
T ss_pred HHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH--HHHH
Confidence 3322 3444444333 2223444443 3333333332110 1112222 3566
Q ss_pred HHHHHHhhc--CCHHHHHHHHHHHHHHhc
Q 012404 430 GTISKLAQD--GTARAKRKATGILERLKR 456 (464)
Q Consensus 430 ~~L~~Ll~~--g~~~~k~~A~~~L~~l~~ 456 (464)
+.+.++++. ++..+.+.+..+++.+..
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 666666643 467889999988887654
No 181
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=87.32 E-value=5.2 Score=39.19 Aligned_cols=130 Identities=8% Similarity=0.118 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhccCchhhhHHHhc-CcHHHHHHHHcCC--chHHHHHHHHHHhhCCHH--H-HHHHHhc--------
Q 012404 317 QSAMKDVASAIFNLCITHENKARAVRD-GGVSVILKKIMDG--VHVDELLAILAMLSTNHR--A-VEEIGDL-------- 382 (464)
Q Consensus 317 ~~~~~~al~aL~~L~~~~~~~~~iv~~-g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~--~-~~~i~~~-------- 382 (464)
......++.+|..|.....+...++.. +++..|...|... .++..++.+|..+|..++ | ...+.++
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 456778899999998888777777765 7788888888755 566678889999998643 5 4333222
Q ss_pred --CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChh-----hHHHHHHhhccHHHHHHHhhcCCHHHHHH
Q 012404 383 --GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRT-----KWKAMREEESTHGTISKLAQDGTARAKRK 446 (464)
Q Consensus 383 --g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~-----~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~ 446 (464)
.-...||+.+..+.+...+..+...+..|....++ ..+.-+...|+.+.|.+|-..+++.+...
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 23556787777555566777777777777666552 22222335788888888876666665444
No 182
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=87.07 E-value=9.3 Score=37.34 Aligned_cols=141 Identities=21% Similarity=0.207 Sum_probs=93.9
Q ss_pred CCchhhhhhhcccccccC-----CCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 012404 213 HDAIPQLLSPLSESKCEN-----GINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALF 287 (464)
Q Consensus 213 ~g~i~~Lv~lL~~~~~~~-----~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~ 287 (464)
.+|+..|+..|....... ..+...+...+.+|..+.........+...+.++..|+..|.+.++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 467888888876332100 113456677888888887777666667777778898999888888999999998888
Q ss_pred HhcccCc--c-hhhhc----------ccCchHHHHHhccc-CCHHHHHHHHHHHHHhccCch-------hhhHHHhcCcH
Q 012404 288 TLSALDS--N-KEVIG----------KSGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHE-------NKARAVRDGGV 346 (464)
Q Consensus 288 ~Ls~~~~--~-~~~i~----------~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~-------~~~~iv~~g~v 346 (464)
.+|..+. + ...+. +..-+..||+.+.. .+.+.+..++..+-.|....+ .|..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8887653 3 22222 23467778888874 466777777777777765553 23444555655
Q ss_pred HHHHHHHc
Q 012404 347 SVILKKIM 354 (464)
Q Consensus 347 ~~Lv~lL~ 354 (464)
+.| +.|.
T Consensus 206 ~il-~~Lr 212 (386)
T 2bnx_A 206 QVL-QELR 212 (386)
T ss_dssp HHH-HHHT
T ss_pred HHH-HHHh
Confidence 554 4454
No 183
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=86.99 E-value=8.4 Score=42.37 Aligned_cols=211 Identities=15% Similarity=0.095 Sum_probs=117.9
Q ss_pred CChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHH---h--cCCHHHHHHHHHHHHHhccc-CcchhhhcccCch
Q 012404 232 INPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDAL---R--SGTIETRSNAAAALFTLSAL-DSNKEVIGKSGAL 305 (464)
Q Consensus 232 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL---~--~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i 305 (464)
.+...++.|+.++..++.+-.... . ..++.++.++ . ..++.++..++++|..++.. ..+...+ ..++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~-~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----K-RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----h-HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 356678888888888876543211 1 2455555544 2 24788999999999998853 2222111 2356
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHh--cCcHHHHHHHHcCC----chHHHHHHHHHHhhCC--HHHHH
Q 012404 306 KPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVR--DGGVSVILKKIMDG----VHVDELLAILAMLSTN--HRAVE 377 (464)
Q Consensus 306 ~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~--~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~--~~~~~ 377 (464)
+.|+..| + +.+...|+.++.+|+... +..+.. ...+..|.+++..+ ..+..++.++..++.. ++...
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6677666 2 678999999999999432 233332 24455566666653 4566677777777653 23333
Q ss_pred HHHhcCcHHHHHH----HHhccC-ChhHHHHHHHHHHHHhccC----------------hhhHHHHHHhhccHHHHHHHh
Q 012404 378 EIGDLGGVSCMLR----IIREST-CDRNKENCIAILHTICLSD----------------RTKWKAMREEESTHGTISKLA 436 (464)
Q Consensus 378 ~i~~~g~i~~Lv~----ll~~~~-~~~~~~~A~~~L~~L~~~~----------------~~~~~~~~~~~g~~~~L~~Ll 436 (464)
...+. .++.++. +++... ++..+......|..|+..- ++...... ...++.+..++
T Consensus 624 ~~~~~-ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l 700 (971)
T 2x1g_F 624 KYLDI-IVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIA 700 (971)
T ss_dssp HHHHH-HHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHH
Confidence 32221 2333433 333221 2334455555555554311 11112222 35777777777
Q ss_pred hc--CCHHHHHHHHHHHHHHhcc
Q 012404 437 QD--GTARAKRKATGILERLKRT 457 (464)
Q Consensus 437 ~~--g~~~~k~~A~~~L~~l~~~ 457 (464)
+. .++.+.+.+.+++..+...
T Consensus 701 ~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 701 EMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHh
Confidence 54 3678999999999987553
No 184
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.90 E-value=1.9 Score=44.16 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=100.9
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCCh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVI 264 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i 264 (464)
..+|+.+++.|..+ ..-+.. ..++..|+..+. ....+++-.++-.|..+ .+ .+..-.+++
T Consensus 242 APVRETaAQtLGaL-~hLp~e-------~~IL~qLV~~l~------~~~WEVRHGGLLGLKYL--~D----LL~~Ld~Vv 301 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-------NDIIEQLVGFLD------SGDWQVQFSGLIALGYL--KE----FVEDKDGLC 301 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-------CCHHHHHTTGGG------CSCHHHHHHHHHHHHHT--GG----GCCCHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-------HHHHHHHHhhcC------CCCeeehhhhHHHHHHH--HH----HHHHHHHHH
Confidence 56788888888887 522221 234555555555 34568999999999988 11 111112477
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC-CH-HHHHHHHHHHHHhccCchhhhHHHh
Q 012404 265 PLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG-HQ-SAMKDVASAIFNLCITHENKARAVR 342 (464)
Q Consensus 265 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~-~~~~~al~aL~~L~~~~~~~~~iv~ 342 (464)
+.++.-|.+.+.+++..||.+|.-++ ..+ .+ ..++..|.+.|.+- +. ......+..|..|+..+.+. ...
T Consensus 302 ~aVL~GL~D~DDDVRAVAAetLiPIA-~p~---~l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~d 373 (800)
T 3oc3_A 302 RKLVSLLSSPDEDIKLLSAELLCHFP-ITD---SL--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIP 373 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHTTSC-CSS---TH--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCC
T ss_pred HHHHhhcCCcccHHHHHHHHHhhhhc-chh---hH--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccC
Confidence 88888888889999999999999888 111 01 12344455555432 21 23455566777777666321 122
Q ss_pred cCcHHHHHHHHcCC--chHHHHHHHHHHhh
Q 012404 343 DGGVSVILKKIMDG--VHVDELLAILAMLS 370 (464)
Q Consensus 343 ~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~ 370 (464)
...||.|...+... +++..++.+|..+.
T Consensus 374 p~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 374 PERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 36788888888876 78888888887777
No 185
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=83.58 E-value=0.47 Score=37.00 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=29.5
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcC
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG 117 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~ 117 (464)
+++||+|++.+..+.++|+ ...|..|+.|+..+
T Consensus 63 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLEPV--PELKEQIQAWMREK 95 (100)
T ss_dssp CSBCSSSCCBCCTTSSEEC--HHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCChhhceEC--HHHHHHHHHHHHHh
Confidence 5789999999998889997 77999999999864
No 186
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=83.33 E-value=32 Score=32.73 Aligned_cols=196 Identities=9% Similarity=0.025 Sum_probs=134.8
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhcccC-cchhhhcc--cCchHHHHHhccc-CCHHHHHHHHHHHHHhccCchhh
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSALD-SNKEVIGK--SGALKPLIDLLDE-GHQSAMKDVASAIFNLCITHENK 337 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~--~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~~~~~~ 337 (464)
+.+..|+..|..=+.+.|+.++....++.... ..+...++ ..-.+.|..|+.. ++++..-.+-..|......+...
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 47777888887889999999999888887643 22222211 0112333333333 25666667777777777777777
Q ss_pred hHHHhcCcHHHHHHHHcCC--chHHHHHHHHHHhhC-CHHHHHHHHhcC---cHHHHHHHHhccCChhHHHHHHHHHHHH
Q 012404 338 ARAVRDGGVSVILKKIMDG--VHVDELLAILAMLST-NHRAVEEIGDLG---GVSCMLRIIRESTCDRNKENCIAILHTI 411 (464)
Q Consensus 338 ~~iv~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~A~~~L~~L 411 (464)
..+...+.+-.+.+.+..+ ++...|..++..|-. +.....++...+ .....-.+|.++ +--++.+++.+|..|
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLLgel 236 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGEL 236 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHH
Confidence 7777777888888888866 677778888777654 566666776654 366677888866 589999999999999
Q ss_pred hccChh--hHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Q 012404 412 CLSDRT--KWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTV 458 (464)
Q Consensus 412 ~~~~~~--~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~ 458 (464)
-..... -...-+.+..-+..+..|+.+.+..++-.|--+.+.+-..|
T Consensus 237 Lldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 237 LLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 875432 22223334556778888899999889999888877665433
No 187
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.84 E-value=28 Score=34.88 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=76.7
Q ss_pred hcCCHHHHHHHHHHHHHhccc-CcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHH
Q 012404 272 RSGTIETRSNAAAALFTLSAL-DSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVIL 350 (464)
Q Consensus 272 ~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv 350 (464)
..|+...++-|+..|...-.. ++.. ..+|..+++|+.+++..++..|.+.|..+|.. ++-.+ ++..|+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILT 106 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence 356888999999988876653 3333 34688999999999999999999999999988 55444 456889
Q ss_pred HHHcCCchHHH--HHHHHHHhhC-CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHH
Q 012404 351 KKIMDGVHVDE--LLAILAMLST-NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHT 410 (464)
Q Consensus 351 ~lL~~~~~~~~--a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 410 (464)
++|+.++..+. .-.+|..|-. ++. |.+..|..-+..+. +.+++.++..|..
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~-e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGE-DIVRERAIKFLST 160 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSC-HHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccc-hHHHHHHHHHHHH
Confidence 99986533222 1122222211 111 23444443333343 7777777776643
No 188
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=81.82 E-value=25 Score=32.28 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=107.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc----ccCCHHHHHHHHHHHHHhccCc-hhhh
Q 012404 264 IPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL----DEGHQSAMKDVASAIFNLCITH-ENKA 338 (464)
Q Consensus 264 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~al~aL~~L~~~~-~~~~ 338 (464)
-+-+...|-+.+..-+..++..|....... ....+ ..++.+++.+ -+.+..+...++.+|..+...- +.-.
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~-~~~~~---~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADTS-PRSLL---SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHHC-HHHHH---HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 344566666777777777777776643321 11222 1233334432 2558888888888888774321 1111
Q ss_pred HHH--h-cCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 339 RAV--R-DGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 339 ~iv--~-~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
.+. + .-.+|.|++-+.+. .+++.+-.+|..++.- .--....+.+++-+++- +.++++.++..+..+-.
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSK-NARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 222 2 23689999999876 5777777777766531 00112344455556544 58999998888887755
Q ss_pred cChhhHHHHHHhhccH---HHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 012404 414 SDRTKWKAMREEESTH---GTISKLAQDGTARAKRKATGILERLKR 456 (464)
Q Consensus 414 ~~~~~~~~~~~~~g~~---~~L~~Ll~~g~~~~k~~A~~~L~~l~~ 456 (464)
..... ....+ +.+.+++.+.+..++..|...+--+-+
T Consensus 197 ~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33221 13466 888899999999999999888775543
No 189
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.79 E-value=10 Score=42.16 Aligned_cols=216 Identities=10% Similarity=0.037 Sum_probs=121.6
Q ss_pred hHHHHHHhh-cCCchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC-
Q 012404 173 HFLSLLKKM-SATLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH- 250 (464)
Q Consensus 173 ~i~~Lv~~L-s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~- 250 (464)
.+..++..+ +.+...+.+|-..|..+.+ + .++...+..+|.+ +.++.++-.|+.+|.+....
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~----------p~~~~~l~~iL~~-----s~~~~vr~~aa~~Lk~~i~~~ 80 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-N----------PDAWQKADQILQF-----STNPQSKFIALSILDKLITRK 80 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-S----------TTGGGGHHHHHHH-----CSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHh-C----------chHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHhh
Confidence 444555444 3444566677777776655 2 4556666777754 33678899999999887432
Q ss_pred -----cchHHHHhcCCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHH
Q 012404 251 -----DNNKKLVAETPMVIPLLMDALRSG-----TIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSA 319 (464)
Q Consensus 251 -----~~~~~~i~~~~~~i~~Lv~lL~~~-----~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 319 (464)
++.+..+-. .++..+...-..+ +..++...+.++..++..+ ...+ .+.++.|+.+++ .++..
T Consensus 81 W~~l~~~~~~~ir~--~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~~~~~ 153 (1049)
T 3m1i_C 81 WKLLPNDHRIGIRN--FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-SSVNV 153 (1049)
T ss_dssp GGGSCHHHHHHHHH--HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-TCHHH
T ss_pred CccCCHHHHHHHHH--HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-cChHH
Confidence 223333332 1233222221111 2556777777788777643 2222 467889999986 55666
Q ss_pred HHHHHHHHHHhccCch---------hh-----hHHHhc--CcHHHHHHHHcCC---chHHHHHHHHHHhhCCHHHHHHHH
Q 012404 320 MKDVASAIFNLCITHE---------NK-----ARAVRD--GGVSVILKKIMDG---VHVDELLAILAMLSTNHRAVEEIG 380 (464)
Q Consensus 320 ~~~al~aL~~L~~~~~---------~~-----~~iv~~--g~v~~Lv~lL~~~---~~~~~a~~~L~~L~~~~~~~~~i~ 380 (464)
.+.++.+|..|+..-. .| ..+... .+++.+..++.+. .++..++.++......-+. ..+.
T Consensus 154 ~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~ 232 (1049)
T 3m1i_C 154 CENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIY 232 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHh
Confidence 7788888887763211 11 112221 1223333444322 4677788888776554221 1234
Q ss_pred hcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 381 DLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 381 ~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
+...++.+.+.+.. ++..+..|+.+|..+...
T Consensus 233 ~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 233 ETNILELLSTKFMT--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp SSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhC
Confidence 45556666633322 377888888888888765
No 190
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=78.74 E-value=28 Score=38.72 Aligned_cols=140 Identities=11% Similarity=-0.013 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHhcccCcc-hhhhcccCchHHHHHhccc-----CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHH
Q 012404 274 GTIETRSNAAAALFTLSALDSN-KEVIGKSGALKPLIDLLDE-----GHQSAMKDVASAIFNLCITHENKARAVRDGGVS 347 (464)
Q Consensus 274 ~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~ 347 (464)
.+...+++++.+++.++..... ...-.-..+++.|+.++.. ....++..++++|...+..-........ .++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 4688999999999999875422 1211124567888888863 1223444667888777654332222221 2455
Q ss_pred HHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHh------cCcHHHHHHHHhc---cCChhHHHHHHHHHHHHhccCh
Q 012404 348 VILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGD------LGGVSCMLRIIRE---STCDRNKENCIAILHTICLSDR 416 (464)
Q Consensus 348 ~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~------~g~i~~Lv~ll~~---~~~~~~~~~A~~~L~~L~~~~~ 416 (464)
.|++.|.++ .+++.|+++|.+||.. .+..+.. ...++.++..+.. .-.......+..++..+....+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 555555433 5899999999999963 3344432 1234444433222 1236666778888888877655
No 191
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=77.96 E-value=0.84 Score=35.37 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcC
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG 117 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~ 117 (464)
+.+||+|++.+....++|+ ...|..|++|+..+
T Consensus 57 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRPN--TELKEKIQRWLAER 89 (98)
T ss_dssp SCBCTTTCSBCCTTTSEEC--HHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCChhhceEc--HHHHHHHHHHHHHc
Confidence 4689999999998888897 77999999999863
No 192
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.57 E-value=8.2 Score=31.81 Aligned_cols=70 Identities=7% Similarity=0.111 Sum_probs=55.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLK 455 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~ 455 (464)
+..|.+-|.+. ++..+..|+.+|-.+..+........+....++.-|.+++....+.+|++...++...+
T Consensus 44 ~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 55677777765 48999999999999888877666655545678888888887778899999999998765
No 193
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=76.72 E-value=38 Score=32.48 Aligned_cols=108 Identities=9% Similarity=0.088 Sum_probs=83.8
Q ss_pred HHHhcccCcch-hhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcC---CchHHH
Q 012404 286 LFTLSALDSNK-EVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD---GVHVDE 361 (464)
Q Consensus 286 L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~---~~~~~~ 361 (464)
|.+|..++++. .-++...+|..+..++.-++.++.+.+...|...+.....+..-.+ ..+|.++..+.- +++.-.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L~-e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPLE-NILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCCT-THHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcccc-ccchHHHHHhccCCCcceEEe
Confidence 56677777554 4577888999999999888999999999999988876554433222 578888888862 278888
Q ss_pred HHHHHHHhhCCHH-HHHHHHhcCcHHHHHHHHhc
Q 012404 362 LLAILAMLSTNHR-AVEEIGDLGGVSCMLRIIRE 394 (464)
Q Consensus 362 a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~ 394 (464)
..+.|+|+..+.. .++..+..|+|..|...+..
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 9999999999865 55666788999999887764
No 194
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=76.55 E-value=62 Score=35.71 Aligned_cols=213 Identities=9% Similarity=0.011 Sum_probs=115.7
Q ss_pred ChhhHHHHHHHHHccccCcch-HHHHhcC----CCChHHHHHHHh-----cCCHHHHHHHHHHHHHhcccCcchhhhccc
Q 012404 233 NPNLQEDVITTLLNLSIHDNN-KKLVAET----PMVIPLLMDALR-----SGTIETRSNAAAALFTLSALDSNKEVIGKS 302 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~~-~~~i~~~----~~~i~~Lv~lL~-----~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~ 302 (464)
+....|.++-+|..++.+-.+ ...+.+. +..++.+..+++ ..++.++..+++++...+..=.. ..
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-----~~ 530 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-----ES 530 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----CC
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----Cc
Confidence 356788888888887664322 1111011 123444555555 45789999999999988764221 22
Q ss_pred CchHHHHHhccc------CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcC-------C-c-----------
Q 012404 303 GALKPLIDLLDE------GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMD-------G-V----------- 357 (464)
Q Consensus 303 g~i~~Lv~lL~~------~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~-------~-~----------- 357 (464)
..++.++..+-+ .++.++..|+.++.++|..... .+. +.++.++..+.. + .
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~--~L~--~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK--QVV--NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT--TCS--SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH--Hhh--hHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 445665555433 4678999999999999875432 232 345555554431 0 0
Q ss_pred --------h---HHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHH----HHhccC---ChhHH-HHHHHHHHHHhccChh
Q 012404 358 --------H---VDELLAILAMLSTN-HRAVEEIGDLGGVSCMLR----IIREST---CDRNK-ENCIAILHTICLSDRT 417 (464)
Q Consensus 358 --------~---~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~----ll~~~~---~~~~~-~~A~~~L~~L~~~~~~ 417 (464)
- .-.|++.|...... ++.+....+. .++.++. .+.... .+..+ .+.+.+|..++..-+.
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~-ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~ 685 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDS-LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA 685 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence 1 22244444443333 4444444332 3344443 332211 11111 2456666777754321
Q ss_pred h------HHHHHHhhccHHHHHHHhh--cCCHHHHHHHHHHHHHHhcc
Q 012404 418 K------WKAMREEESTHGTISKLAQ--DGTARAKRKATGILERLKRT 457 (464)
Q Consensus 418 ~------~~~~~~~~g~~~~L~~Ll~--~g~~~~k~~A~~~L~~l~~~ 457 (464)
. +..++. ...+.+...+. .++..+++++...++++-..
T Consensus 686 ~~~~~~p~~~~f~--~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 686 RGSEEVAWLASFN--KASDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731 (980)
T ss_dssp CC-CCCSHHHHHH--HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCcHHHHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 1 233332 45555555555 45778999999999887543
No 195
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=76.26 E-value=2.7 Score=38.38 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=47.4
Q ss_pred CchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHH
Q 012404 202 MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSN 281 (464)
Q Consensus 202 ~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~ 281 (464)
++..|..... .=....|..+++ ++++.++..++..| . .+.|..+++..+..+|..
T Consensus 63 ~~~VR~~AA~-~l~~~~l~~L~~------D~~~~VR~~aA~~L---~---------------~~~L~~ll~D~d~~VR~~ 117 (244)
T 1lrv_A 63 FWERRAIAVR-YSPVEALTPLIR------DSDEVVRRAVAYRL---P---------------REQLSALMFDEDREVRIT 117 (244)
T ss_dssp SHHHHHHHHT-TSCGGGGGGGTT------CSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHH
T ss_pred CHHHHHHHHH-hCCHHHHHHHcc------CcCHHHHHHHHHHC---C---------------HHHHHHHHcCCCHHHHHH
Confidence 4455655555 223344555555 55677777777532 1 123556677778888888
Q ss_pred HHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHH
Q 012404 282 AAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVAS 325 (464)
Q Consensus 282 aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~ 325 (464)
++..| . .+.|..++.+++..++..++.
T Consensus 118 aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 118 VADRL---P--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp HHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 77632 1 123455566667777777666
No 196
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=75.99 E-value=25 Score=33.78 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=89.0
Q ss_pred HHccccCcchH-HHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc-CCHHHHH
Q 012404 244 LLNLSIHDNNK-KLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-GHQSAMK 321 (464)
Q Consensus 244 L~~Ls~~~~~~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~ 321 (464)
|.+|-.++.+. .-++... .+..+..++.-++.+..++....|...+.....+. .--...+|.++..+.- ++.++.-
T Consensus 266 LL~LLmHdSnAIDGFVk~D-Gv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSD-GVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTT-HHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecc-cceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccCCCcceEE
Confidence 55666777654 4566654 57878888888999999999998888775443222 1124568888888865 5788999
Q ss_pred HHHHHHHHhccCc-hhhhHHHhcCcHHHHHHHHcCC---------chHHHHHHHHHHh
Q 012404 322 DVASAIFNLCITH-ENKARAVRDGGVSVILKKIMDG---------VHVDELLAILAML 369 (464)
Q Consensus 322 ~al~aL~~L~~~~-~~~~~iv~~g~v~~Lv~lL~~~---------~~~~~a~~~L~~L 369 (464)
.+...|.|...+. ..+...+..|+++.|-+.+... .-+..|+++++|-
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 9999999999887 5677778899999999887521 1234466666654
No 197
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=75.89 E-value=0.92 Score=34.06 Aligned_cols=32 Identities=13% Similarity=0.377 Sum_probs=27.9
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHc
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 116 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~ 116 (464)
+++||+|++.+....++|+ ...|..|+.|...
T Consensus 48 ~~~cP~~~~~l~~~~l~pn--~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 48 SPTDPFNRQMLTESMLEPV--PELKEQIQAWMRE 79 (85)
T ss_dssp CSBCTTTCCBCCGGGCEEC--HHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCChHhcchH--HHHHHHHHHHHHH
Confidence 4689999999988888887 6799999999875
No 198
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=74.14 E-value=13 Score=31.57 Aligned_cols=72 Identities=3% Similarity=0.071 Sum_probs=56.1
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc-CCHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD-GTARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~-g~~~~k~~A~~~L~~l~~ 456 (464)
++..|.+-|++. ++.++-.|+.+|-.+..+........+....++..|++++.. ..+.+|+++..++..-..
T Consensus 53 A~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 355677777765 489999999999999988776666555556788889998875 467899999999987653
No 199
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=73.94 E-value=62 Score=30.73 Aligned_cols=156 Identities=17% Similarity=0.066 Sum_probs=112.7
Q ss_pred hhcccCchHHHHHhcccCCHHHHHHHHHHHHHhccCc-hhhhHHHhc-----CcHHHHHHHHcCCchHHHHHHHHHHhhC
Q 012404 298 VIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCITH-ENKARAVRD-----GGVSVILKKIMDGVHVDELLAILAMLST 371 (464)
Q Consensus 298 ~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~~~-~~~~~iv~~-----g~v~~Lv~lL~~~~~~~~a~~~L~~L~~ 371 (464)
.+.+.+.+..|+..|..-+-+.++.+.....+|-... .++.-.++. ..+..|++--.++++.-.+=.+|.....
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 3455788899999998888999999999999887755 333333321 2233333322344777788888888888
Q ss_pred CHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHH--hhccHHHHHHHhhcCCHHHHHHHHH
Q 012404 372 NHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMRE--EESTHGTISKLAQDGTARAKRKATG 449 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~--~~g~~~~L~~Ll~~g~~~~k~~A~~ 449 (464)
++.....+...+.+..+.+.++.++ -.+..-|..++..|-.....-+.+.+. -..+.....+|+++++=-+|+++..
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~~-FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMST-FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSS-HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCC-chHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 9888888888888888889888664 777778888888887766554444443 1134556777899999899999999
Q ss_pred HHHHH
Q 012404 450 ILERL 454 (464)
Q Consensus 450 ~L~~l 454 (464)
+|..+
T Consensus 232 LLgel 236 (341)
T 1upk_A 232 LLGEL 236 (341)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99855
No 200
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=72.52 E-value=2.7 Score=38.19 Aligned_cols=49 Identities=14% Similarity=0.390 Sum_probs=38.6
Q ss_pred cccCccchhhccCcccCC-CCccccHHHHHHHHHcC-CCCCCCCcccccCC
Q 012404 83 EFKCPLSKELMRDPVILA-SGQTFDRPYIQRWLKAG-NRTCPRTQQVLSHT 131 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~-~g~~~~r~~I~~~~~~~-~~~~P~~~~~l~~~ 131 (464)
-..|.||.++..--+.-+ |++.|-+.|+.+|+... ...||.|+.+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 456999999877544444 89999999999999753 46899999886544
No 201
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.90 E-value=38 Score=37.56 Aligned_cols=162 Identities=8% Similarity=0.039 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccC------cchhhhcccCchH
Q 012404 234 PNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALD------SNKEVIGKSGALK 306 (464)
Q Consensus 234 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~------~~~~~i~~~g~i~ 306 (464)
...+..|-..|..+. ..+++...+..+|.++ +..+|..|+.+|.+..... +.+..| =.
T Consensus 30 ~~~r~~Ae~~L~~~~----------~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i-----r~ 94 (1049)
T 3m1i_C 30 GVQQKQAQEILTKFQ----------DNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI-----RN 94 (1049)
T ss_dssp HHHHHHHHHHHHHHH----------HSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-----HH
T ss_pred hHHHHHHHHHHHHHH----------hCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH-----HH
Confidence 344555555555442 2345666677777654 7889999999999876432 112222 22
Q ss_pred HHHHhcccC---------CHHHHHHHHHHHHHhccC--chhhhHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhhCC--
Q 012404 307 PLIDLLDEG---------HQSAMKDVASAIFNLCIT--HENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTN-- 372 (464)
Q Consensus 307 ~Lv~lL~~~---------~~~~~~~al~aL~~L~~~--~~~~~~iv~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~-- 372 (464)
.|+.++... ++.++...+.++..++.. ++.. .+.++.|+..+..+ ...+.++.+|..|+..
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSSSSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 344444331 245666667777776654 2222 25788888888644 4467788888888732
Q ss_pred --------HHHH----HHHHhc--CcHHHHHHHHhccCChhHHHHHHHHHHHHhccC
Q 012404 373 --------HRAV----EEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSD 415 (464)
Q Consensus 373 --------~~~~----~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~ 415 (464)
...+ ..+.+. ..+..+..++....+...+..|+.++......-
T Consensus 170 ~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi 226 (1049)
T 3m1i_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI 226 (1049)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Confidence 0111 223322 123334455655445678888888887765533
No 202
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=71.33 E-value=0.62 Score=28.42 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=13.8
Q ss_pred cccCccchhhccCcccC
Q 012404 83 EFKCPLSKELMRDPVIL 99 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~ 99 (464)
-|+||+|+.-+..|..+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 59999999888887544
No 203
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.01 E-value=16 Score=31.16 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=56.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc------CCHHHHHHHHHHHHHHhc
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLKR 456 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~------g~~~~k~~A~~~L~~l~~ 456 (464)
+..|.+-|++. ++.++..|+.+|-.+..+........+....++.-|++++.. -...+|+++..++..-+.
T Consensus 52 ~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 56677778766 499999999999999998776666656567889999999853 256899999999987653
No 204
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.91 E-value=15 Score=30.63 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=56.5
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc------CCHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~------g~~~~k~~A~~~L~~l~~ 456 (464)
++..|.+-|++. ++.++..|+.+|-.+..+........+....++.-|++++.. ....+|+++..++..-+.
T Consensus 39 a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 356677777765 599999999999999998776665666567888899998864 266899999999987653
No 205
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=69.53 E-value=18 Score=30.07 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=56.8
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhc------CCHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQD------GTARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~------g~~~~k~~A~~~L~~l~~ 456 (464)
++..|.+-+++. ++.++..|+.+|-.+..+....+...+....++.-|++++.. ..+.+|++...++..-+.
T Consensus 49 a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 355777777765 599999999999999998877765655567788899998853 367899999999987653
No 206
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=67.88 E-value=1.2e+02 Score=33.58 Aligned_cols=126 Identities=13% Similarity=0.062 Sum_probs=75.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc-------CCHHHHHHHHHHHHHhccCchhhh
Q 012404 266 LLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE-------GHQSAMKDVASAIFNLCITHENKA 338 (464)
Q Consensus 266 ~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~al~aL~~L~~~~~~~~ 338 (464)
.|.+.+..++.+-+..++.+|.|+... +.++.|..++.. ....++..|++||..+.....
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p--- 510 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--- 510 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---
T ss_pred HHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---
Confidence 344555677777788888888888752 346667777642 145677889999888874321
Q ss_pred HHHhcCcHHHHHHHHcCC----chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 339 RAVRDGGVSVILKKIMDG----VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 339 ~iv~~g~v~~Lv~lL~~~----~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
+. +-+.|+.+..+. .++-.|+.+| +-++|. ...+..+...+....+..+.......|.+++..
T Consensus 511 ~~----v~~il~~i~~n~~e~~EvRiaA~~~L--m~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 511 RK----VQEIVLPIFLNVAIKSELRIRSCIVF--FESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HH----HHHHHHHHHHCTTSCHHHHHHHHHHH--HHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HH----HHHHHHHHhcCCCCChHHHHHHHHHH--HHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 11 234566666543 3444444443 322221 122455666666555577777777788888776
Q ss_pred Chh
Q 012404 415 DRT 417 (464)
Q Consensus 415 ~~~ 417 (464)
...
T Consensus 578 ~~P 580 (1056)
T 1lsh_A 578 SNP 580 (1056)
T ss_dssp CSG
T ss_pred CCc
Confidence 543
No 207
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=67.67 E-value=81 Score=29.51 Aligned_cols=147 Identities=8% Similarity=0.105 Sum_probs=98.0
Q ss_pred chHHHHHhcccC------CHHHHHHHHHHHHHhccCchhhhHHHhc--CcHHHHHHHHcCC-chHHHHHHHHHHhhCC-H
Q 012404 304 ALKPLIDLLDEG------HQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIMDG-VHVDELLAILAMLSTN-H 373 (464)
Q Consensus 304 ~i~~Lv~lL~~~------~~~~~~~al~aL~~L~~~~~~~~~iv~~--g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~-~ 373 (464)
.+.....+++++ +......|+..|.-++-.=+--.++++. ..+..|+-....+ .+++.|..+|...-.+ |
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 455666777776 4456788899998888876666667653 3333333111122 5788899999888885 7
Q ss_pred HHHHHHHhc--CcHHHHHHHHhcc------CChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC--CHHH
Q 012404 374 RAVEEIGDL--GGVSCMLRIIRES------TCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG--TARA 443 (464)
Q Consensus 374 ~~~~~i~~~--g~i~~Lv~ll~~~------~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g--~~~~ 443 (464)
.....+... ..+..+..-|... .+......-+++|..|...+. . +. ...+..|.++...+ ++.+
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~---F~--~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-D---LP--IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-T---C----CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-h---hh--hccHHHHHHHHccCCCCHHH
Confidence 777766544 4566666444431 235667778888888887652 1 11 24667888887777 8899
Q ss_pred HHHHHHHHHHHhc
Q 012404 444 KRKATGILERLKR 456 (464)
Q Consensus 444 k~~A~~~L~~l~~ 456 (464)
|.|+..++..+-.
T Consensus 177 k~Kvl~li~d~f~ 189 (315)
T 3qml_C 177 QIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999987764
No 208
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=67.56 E-value=23 Score=39.40 Aligned_cols=99 Identities=8% Similarity=0.051 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHhccCch-hhhHHHhcCcHHHHHHHHcCC-------chHHHHHHHHHHhhCCHHHHHHHHhcCcHHH
Q 012404 316 HQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMDG-------VHVDELLAILAMLSTNHRAVEEIGDLGGVSC 387 (464)
Q Consensus 316 ~~~~~~~al~aL~~L~~~~~-~~~~iv~~g~v~~Lv~lL~~~-------~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~ 387 (464)
+-..++.++.+++.++.... ....-.=..+++.|+.++... .++..++++|+..+..=.....+.. ..+..
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~~ 544 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVILK 544 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHH
Confidence 56789999999999987653 212111124677888877531 2233455666665542111111111 23444
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHhccCh
Q 012404 388 MLRIIRESTCDRNKENCIAILHTICLSDR 416 (464)
Q Consensus 388 Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~ 416 (464)
|+..|... .+.++++|++++..||....
T Consensus 545 L~~~l~~~-~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 545 LFEFMHET-HEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 55555433 37899999999999998543
No 209
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=67.26 E-value=44 Score=37.23 Aligned_cols=216 Identities=13% Similarity=0.040 Sum_probs=125.2
Q ss_pred hhhHHHHHHhhcC-CchhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHcccc
Q 012404 171 RDHFLSLLKKMSA-TLPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSI 249 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~ 249 (464)
-..+..++..+.+ +.+.+.+|-..|..+-+ + .++...+..+|.. +.++.++-.|+.+|.+...
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-s----------p~aw~~~~~iL~~-----s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-H----------PDAWTRVDTILEF-----SQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-C----------SCHHHHHTCC--------CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-C----------chHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHH
Confidence 3466777777744 34556666666655544 3 4555556666653 3468899999999988744
Q ss_pred C------cchHHHHhcCCCChHHHHHHHhc-----CCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCH
Q 012404 250 H------DNNKKLVAETPMVIPLLMDALRS-----GTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQ 317 (464)
Q Consensus 250 ~------~~~~~~i~~~~~~i~~Lv~lL~~-----~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~ 317 (464)
. ++.+..+-. .++..+...-.. .++..+...+.++..+...+ ...+ .+.++-|+.++.. ++
T Consensus 91 ~~W~~L~~e~~~~LR~--~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W----p~fi~dLv~~~~~-~~ 163 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKK--YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW----PTFISDIVGASRT-SE 163 (1073)
T ss_dssp HTGGGSCHHHHHHHHH--HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHH-CH
T ss_pred hhhhhCCHHHHHHHHH--HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc----cHHHHHHHHHhCC-CH
Confidence 3 223333332 133333333222 13556666677777776532 1111 4567788887754 45
Q ss_pred HHHHHHHHHHHHhccC--c-------hhh-----hHHHhcCcHHHHHHHH----cCC---chHHHHHHHHHHhhCCHHHH
Q 012404 318 SAMKDVASAIFNLCIT--H-------ENK-----ARAVRDGGVSVILKKI----MDG---VHVDELLAILAMLSTNHRAV 376 (464)
Q Consensus 318 ~~~~~al~aL~~L~~~--~-------~~~-----~~iv~~g~v~~Lv~lL----~~~---~~~~~a~~~L~~L~~~~~~~ 376 (464)
......+..|..|+.. . ..| ..+.+ -+|.++.++ ... .+...++.+|....+.-+.
T Consensus 164 ~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i- 240 (1073)
T 3gjx_A 164 SLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL- 240 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-
Confidence 6677788888887654 1 011 11222 244455443 322 4556677888888775321
Q ss_pred HHHHhcCcHHHHH-HHHhccCChhHHHHHHHHHHHHhccC
Q 012404 377 EEIGDLGGVSCML-RIIRESTCDRNKENCIAILHTICLSD 415 (464)
Q Consensus 377 ~~i~~~g~i~~Lv-~ll~~~~~~~~~~~A~~~L~~L~~~~ 415 (464)
..+.+.+.++.|+ .++. ++..+..|+.+|..+....
T Consensus 241 ~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 241 GYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHSC
T ss_pred HHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhcc
Confidence 2456677777774 5553 3789999999999998754
No 210
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=66.07 E-value=1.7 Score=25.24 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=14.1
Q ss_pred CCcccCccchhhccCccc
Q 012404 81 PEEFKCPLSKELMRDPVI 98 (464)
Q Consensus 81 p~~f~CPi~~~~m~dPv~ 98 (464)
|..|.||+|+..|-|+-+
T Consensus 1 ~~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCCEECTTSSCEESSHHH
T ss_pred CCcccCccccccCcChHH
Confidence 457899999988887743
No 211
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=65.57 E-value=3.4 Score=29.95 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=27.7
Q ss_pred cccCccchhhccCcccCCCCccccHHHHHHHHHcC
Q 012404 83 EFKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG 117 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~ 117 (464)
...||+|+..+....+.|+ ...+..|++|...+
T Consensus 43 ~~~CP~C~~~~~~~~l~~n--~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 43 HKTCPKSQETLLHAGLTPN--YVLKSLIALWCESN 75 (78)
T ss_dssp CCBCTTTCCBCSSCCCEEC--TTTHHHHHHHHHHS
T ss_pred cCCCCCCcCCCChhhCccC--HHHHHHHHHHHHHc
Confidence 6789999999887777776 66899999999863
No 212
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.10 E-value=18 Score=32.46 Aligned_cols=71 Identities=6% Similarity=0.102 Sum_probs=54.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR 456 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g-~~~~k~~A~~~L~~l~~ 456 (464)
+..|.+-|++. ++.++..|+.+|-.+..+........+....++..|.+++... .+.+|+++..++...+.
T Consensus 47 ~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 55677777755 5999999999999998887765555555567888888888654 56799999999987653
No 213
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.84 E-value=28 Score=30.88 Aligned_cols=71 Identities=6% Similarity=0.061 Sum_probs=54.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcC-CHHHHHHHHHHHHHHhc
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDG-TARAKRKATGILERLKR 456 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g-~~~~k~~A~~~L~~l~~ 456 (464)
+..|.+-|++. ++.++..|+.+|-.+..+........+....++..|.+++... ...+|+++..+++.-..
T Consensus 44 ~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 44 FAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 55666777765 4899999999999999987766655554566888888887654 56799999999887653
No 214
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=58.57 E-value=1.6e+02 Score=32.73 Aligned_cols=203 Identities=11% Similarity=-0.007 Sum_probs=112.5
Q ss_pred ChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHhcccC-----cchhhhcccCchH
Q 012404 233 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSG-TIETRSNAAAALFTLSALD-----SNKEVIGKSGALK 306 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~-----~~~~~i~~~g~i~ 306 (464)
+++.+..|-..|..+-..+ ++...+..+|..+ ++.+|..|+.+|.+..... +....-.+..++.
T Consensus 41 ~~~~r~qA~~~L~q~q~sp----------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~ 110 (1073)
T 3gjx_A 41 EGAQQRMAQEVLTHLKEHP----------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVG 110 (1073)
T ss_dssp SHHHHHHHHHHHHTSSCCS----------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCc----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHH
Confidence 4556667777776654433 3455555555544 7899999999998876532 1111112223334
Q ss_pred HHHHhccc-----CCHHHHHHHHHHHHHhccC--chhhhHHHhcCcHHHHHHHHcCC-chHHHHHHHHHHhhCC-----H
Q 012404 307 PLIDLLDE-----GHQSAMKDVASAIFNLCIT--HENKARAVRDGGVSVILKKIMDG-VHVDELLAILAMLSTN-----H 373 (464)
Q Consensus 307 ~Lv~lL~~-----~~~~~~~~al~aL~~L~~~--~~~~~~iv~~g~v~~Lv~lL~~~-~~~~~a~~~L~~L~~~-----~ 373 (464)
.+...-.. .++.++...+.+|..+... ++.. .+.++-|+.++..+ ...+..+.+|..|+.. .
T Consensus 111 ~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~ 185 (1073)
T 3gjx_A 111 LIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSS 185 (1073)
T ss_dssp HHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34333222 1345555566666666532 2222 24677777777644 4566788888888753 0
Q ss_pred -----H----HHHHHHhc--CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHH-HHhhcCCH
Q 012404 374 -----R----AVEEIGDL--GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTIS-KLAQDGTA 441 (464)
Q Consensus 374 -----~----~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~-~Ll~~g~~ 441 (464)
. .+..+.+. ..+..+..++....++.....++.+|.....--+- ..++ +...++.|. .++ +.+
T Consensus 186 ~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~-~~~ll~~L~~~~L--~~~ 260 (1073)
T 3gjx_A 186 GQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIF-ETKLISTLIYKFL--NVP 260 (1073)
T ss_dssp HHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHH-SSSHHHHHHHHTS--SSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhc-cchHHHHHHHHhc--CCh
Confidence 1 12233332 11223334555444567777788888887765442 2444 467777663 444 456
Q ss_pred HHHHHHHHHHHHHh
Q 012404 442 RAKRKATGILERLK 455 (464)
Q Consensus 442 ~~k~~A~~~L~~l~ 455 (464)
..+..|...|..+-
T Consensus 261 ~~r~aA~dcL~eIv 274 (1073)
T 3gjx_A 261 MFRNVSLKCLTEIA 274 (1073)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888777654
No 215
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=57.77 E-value=48 Score=36.90 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=67.7
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhccc----CCHHHHHHHHHHHHHhc----cCc
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDE----GHQSAMKDVASAIFNLC----ITH 334 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~al~aL~~L~----~~~ 334 (464)
++..+.+++.++.....+ |+.+|..+..... -....+..+..++.. .++.+...++.++.+|. ...
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~-----Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~ 430 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQ-----ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT 430 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCC-----CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCC-----CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 455566677766433332 3333332221111 122345666777754 35666666777666664 333
Q ss_pred hhhhHHHhcCcHHHHHHHHc----CCc--hHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhc------cCChhHHH
Q 012404 335 ENKARAVRDGGVSVILKKIM----DGV--HVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRE------STCDRNKE 402 (464)
Q Consensus 335 ~~~~~iv~~g~v~~Lv~lL~----~~~--~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~------~~~~~~~~ 402 (464)
..+. ...++.+.+++. .++ -...++.+|.|+-. + ..++.|..++.. +.+.+++.
T Consensus 431 ~~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-p---------~~l~~l~~~l~~~~~~~~~~~~rvr~ 496 (1056)
T 1lsh_A 431 VSCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-P---------NSIKKIQRFLPGQGKSLDEYSTRVQA 496 (1056)
T ss_dssp SSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred CCCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-h---------hHHHHHHHhhcCccccccccchHHHH
Confidence 2222 133555555543 332 34447777777764 2 234555555531 11245666
Q ss_pred HHHHHHHHHhccCh
Q 012404 403 NCIAILHTICLSDR 416 (464)
Q Consensus 403 ~A~~~L~~L~~~~~ 416 (464)
.|+++|..+....+
T Consensus 497 aAi~ALr~~~~~~p 510 (1056)
T 1lsh_A 497 EAIMALRNIAKRDP 510 (1056)
T ss_dssp HHHHTTTTGGGTCH
T ss_pred HHHHHHHHhhhhch
Confidence 67777777766544
No 216
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=57.53 E-value=3.6 Score=35.57 Aligned_cols=31 Identities=6% Similarity=0.219 Sum_probs=27.6
Q ss_pred cCccchhhccCcccCCCCccccHHHHHHHHHcC
Q 012404 85 KCPLSKELMRDPVILASGQTFDRPYIQRWLKAG 117 (464)
Q Consensus 85 ~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~ 117 (464)
+||+|++.+....++|+ ...|..|+.|+..+
T Consensus 143 tcP~t~~~l~~~~L~pN--~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 143 FDPVTRSPLTQDQLIPN--LAMKEVIDAFIQEN 173 (179)
T ss_dssp BCTTTCCBCCGGGCEEC--HHHHHHHHHHHHHC
T ss_pred CCCCCcCCCChhhCcch--HHHHHHHHHHHHHC
Confidence 79999999988888897 77999999999863
No 217
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=57.34 E-value=1.7e+02 Score=33.03 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=74.4
Q ss_pred chhHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccC------cchHHHHh
Q 012404 185 LPDQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIH------DNNKKLVA 258 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~------~~~~~~i~ 258 (464)
...+.+|-..|..+.+. + ++...+...|... +.+..++-.|+.+|.+.... ++.+..|-
T Consensus 27 ~~~r~~Ae~~L~~~~~~-p----------~~~~~~~~~L~~~----s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEK-C----------PICVPCGLRLAEK----TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHHH-C----------TTHHHHHHHHTST----TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-c----------hHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 34577777777776552 2 2233333333211 44678888888888876432 22333332
Q ss_pred cCCCChHHHHHHHhc-------CCHHHHHHHHHHHHHhcccC-cchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHh
Q 012404 259 ETPMVIPLLMDALRS-------GTIETRSNAAAALFTLSALD-SNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNL 330 (464)
Q Consensus 259 ~~~~~i~~Lv~lL~~-------~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L 330 (464)
..++..+.+ .+..++...+.++..++..+ ...+ .+.++.|+.++.. ++...+.++.+|..|
T Consensus 92 ------~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 92 ------NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRL 160 (1204)
T ss_dssp ------HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 224444432 35677888888888887653 2222 4678889988865 556678889998888
Q ss_pred ccC
Q 012404 331 CIT 333 (464)
Q Consensus 331 ~~~ 333 (464)
+..
T Consensus 161 ~Ee 163 (1204)
T 3a6p_A 161 AED 163 (1204)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 218
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=55.41 E-value=3.5 Score=26.96 Aligned_cols=13 Identities=23% Similarity=0.782 Sum_probs=11.6
Q ss_pred CCCCcccCccchh
Q 012404 79 SCPEEFKCPLSKE 91 (464)
Q Consensus 79 ~~p~~f~CPi~~~ 91 (464)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5899999999985
No 219
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.04 E-value=43 Score=27.95 Aligned_cols=73 Identities=5% Similarity=0.067 Sum_probs=54.0
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHH-HHHHhhc-C--CHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGT-ISKLAQD-G--TARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~-L~~Ll~~-g--~~~~k~~A~~~L~~l~~ 456 (464)
++..|.+-|++..++.++-.|+.+|-.+..+........+....++.- |++++.. + ...+|+++..++..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 355677777643358899999999999999877666665555678886 7888742 2 34799999999987654
No 220
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=54.75 E-value=18 Score=35.56 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=63.8
Q ss_pred ChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh--------cCCHHHHHHHHHHHHHhcccCc-chhhhcccC
Q 012404 233 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALDS-NKEVIGKSG 303 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~--------~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g 303 (464)
.+..+--+++++.||-.++.....++........+++.+. ..+...+.+++.+++|++...- .+.. ..
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~e 351 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LE 351 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TT
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HH
Confidence 5677778899999998877755544443223444555442 1245688899999999987421 1111 23
Q ss_pred chHHHHHhcc---------cCCHHHHHHHHHHHHHhccCc
Q 012404 304 ALKPLIDLLD---------EGHQSAMKDVASAIFNLCITH 334 (464)
Q Consensus 304 ~i~~Lv~lL~---------~~~~~~~~~al~aL~~L~~~~ 334 (464)
....+++.+. ..+.++...++.||.+|....
T Consensus 352 l~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 352 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 3445555554 247889999999999998644
No 221
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=54.59 E-value=21 Score=30.43 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=12.3
Q ss_pred CCCCCcccCccchhhcc
Q 012404 78 VSCPEEFKCPLSKELMR 94 (464)
Q Consensus 78 ~~~p~~f~CPi~~~~m~ 94 (464)
++.+..+.||+|+.+..
T Consensus 133 ~~~~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 133 IEIKKVYICPICGYTAV 149 (170)
T ss_dssp CCCSCEEECTTTCCEEE
T ss_pred CCCCCeeEeCCCCCeeC
Confidence 34566788998887765
No 222
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=51.73 E-value=12 Score=34.23 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHccccCcc-hHHHHhcCCCChHHHHHHHh--------cCCHHHHHHHHHHHHHhcccC-cchhhhccc
Q 012404 233 NPNLQEDVITTLLNLSIHDN-NKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALD-SNKEVIGKS 302 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~~~~i~~Lv~lL~--------~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~ 302 (464)
++..+--+++++.|+-.++. .+..+... .....+++.+. ..+...+.+++..++|++..- ..+. +.
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~-~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~ 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DL 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSH-HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CT
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcc-hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hH
Confidence 56777889999999988887 45544432 22333444331 124578889999999998742 1111 12
Q ss_pred CchHHHHHhcc---------cCCHHHHHHHHHHHHHhccCch
Q 012404 303 GALKPLIDLLD---------EGHQSAMKDVASAIFNLCITHE 335 (464)
Q Consensus 303 g~i~~Lv~lL~---------~~~~~~~~~al~aL~~L~~~~~ 335 (464)
.....+++.+. ..+.++...++.||.+|...+.
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 23344555444 1377899999999999986443
No 223
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.02 E-value=6.5 Score=29.83 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=26.8
Q ss_pred cccCccchhh---ccCcccCCCCccccHHHHHHHHHcC
Q 012404 83 EFKCPLSKEL---MRDPVILASGQTFDRPYIQRWLKAG 117 (464)
Q Consensus 83 ~f~CPi~~~~---m~dPv~~~~g~~~~r~~I~~~~~~~ 117 (464)
.++||+++.- +..+.++|+ ...|..|+.|....
T Consensus 48 ~~~CP~tgc~~~~l~~~~L~pn--~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 48 KAYCPQIGCSHTDIRKSDLIQD--EALRRAIENHNKKR 83 (94)
T ss_dssp CBCCCSTTCCCCCBCGGGEEEC--HHHHHHHHHHHTTC
T ss_pred CCCCCcCcCcccccCHhhCcCC--HHHHHHHHHHHHHh
Confidence 6789996654 777888897 67999999999763
No 224
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=51.00 E-value=1.1e+02 Score=27.53 Aligned_cols=143 Identities=13% Similarity=0.036 Sum_probs=87.3
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhc-ccCCHHHHHHHHHHHHHhcc-CchhhhHH
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLL-DEGHQSAMKDVASAIFNLCI-THENKARA 340 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~al~aL~~L~~-~~~~~~~i 340 (464)
.++....+.++...++|..|+.+|..+ . .....++.+...+ ...+=.+++.+..++..++. .+..+
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 344445556677789999999887776 2 1123455666533 34577899999999998875 22211
Q ss_pred HhcCcHHHHHHHHcCC--chHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhh
Q 012404 341 VRDGGVSVILKKIMDG--VHVDELLAILAMLSTNHRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTK 418 (464)
Q Consensus 341 v~~g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~ 418 (464)
.++.+.+...++ .++..|...+.--+..+.- -.+...+-.++.-+..+.+..++......|..++..+|+-
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 566777777766 3455555443322221100 0011113334444444556899999999999999999987
Q ss_pred HHHHHH
Q 012404 419 WKAMRE 424 (464)
Q Consensus 419 ~~~~~~ 424 (464)
....+.
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 225
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=50.88 E-value=28 Score=31.78 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=54.1
Q ss_pred hHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC
Q 012404 236 LQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG 315 (464)
Q Consensus 236 ~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~ 315 (464)
.+...+.-+..|..+.+.. +.. .+++.++.+....+.++|+-.+..|...+..+. -....+++.|..+|.++
T Consensus 31 ~kl~~L~qa~el~~~~dp~--ll~--~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~ 102 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE--LAE--EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDN 102 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG--GHH--HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHccCHh--HHH--HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCC
Confidence 4444444455544443211 221 256667776556688999999999988874321 12235678888889888
Q ss_pred CHHHHHHHHHHHHH
Q 012404 316 HQSAMKDVASAIFN 329 (464)
Q Consensus 316 ~~~~~~~al~aL~~ 329 (464)
++.+.+.+..+..+
T Consensus 103 d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 103 SAQVIKRVIQACGS 116 (257)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888887765543
No 226
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=50.50 E-value=4.7 Score=27.37 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=12.1
Q ss_pred CCCCcccCccchhh
Q 012404 79 SCPEEFKCPLSKEL 92 (464)
Q Consensus 79 ~~p~~f~CPi~~~~ 92 (464)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 59999999999854
No 227
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=49.61 E-value=17 Score=35.07 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=62.3
Q ss_pred ChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHh--------cCCHHHHHHHHHHHHHhcccCc-chhhhcccC
Q 012404 233 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALR--------SGTIETRSNAAAALFTLSALDS-NKEVIGKSG 303 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~--------~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g 303 (464)
.+..+--+++++.|+-.+......++.+......+++.+. ..+...+.+++..++|++...- .+.. ..
T Consensus 212 ~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~e 288 (362)
T 3l3f_X 212 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LE 288 (362)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TT
T ss_pred ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HH
Confidence 5667778899999998877744444433211223343331 1245688899999999987421 1111 23
Q ss_pred chHHHHHhcc---------cCCHHHHHHHHHHHHHhccCc
Q 012404 304 ALKPLIDLLD---------EGHQSAMKDVASAIFNLCITH 334 (464)
Q Consensus 304 ~i~~Lv~lL~---------~~~~~~~~~al~aL~~L~~~~ 334 (464)
....+++.+. ..+.++...++.||.+|...+
T Consensus 289 l~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 289 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 3445666555 248889999999999998643
No 228
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=49.55 E-value=5.7 Score=26.71 Aligned_cols=13 Identities=23% Similarity=0.899 Sum_probs=11.6
Q ss_pred CCCCcccCccchh
Q 012404 79 SCPEEFKCPLSKE 91 (464)
Q Consensus 79 ~~p~~f~CPi~~~ 91 (464)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 229
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=49.09 E-value=86 Score=28.17 Aligned_cols=130 Identities=7% Similarity=-0.002 Sum_probs=84.5
Q ss_pred HHHhcccCCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc-CC--chHHHHHHHHHHhhC--CHHHHHHHHhc
Q 012404 308 LIDLLDEGHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM-DG--VHVDELLAILAMLST--NHRAVEEIGDL 382 (464)
Q Consensus 308 Lv~lL~~~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~-~~--~~~~~a~~~L~~L~~--~~~~~~~i~~~ 382 (464)
.-.|..++..+++..|+.+|..+ .. ....++.+...+. ++ .+++.+..++..++. +++.
T Consensus 76 a~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~------- 139 (240)
T 3l9t_A 76 AFLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK------- 139 (240)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-------
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-------
Confidence 33444556678888888888877 21 1124555555333 34 688888888888884 3331
Q ss_pred CcHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHhhcCCHHHHHHHHHHHHHHhcccc
Q 012404 383 GGVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLAQDGTARAKRKATGILERLKRTVN 459 (464)
Q Consensus 383 g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~ 459 (464)
.++.+....++. +..++..|...+.--+.. +.. ...-.-+++.|..+..+.+.-+++..++.|+.+++...
T Consensus 140 -~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~-~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 -ALPIIDEWLKSS-NLHTRRAATEGLRIWTNR-PYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp -THHHHHHHHHCS-SHHHHHHHHHHTCSGGGS-TTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHHhcCC-CHHHHHHHHHhhHHHhcc-chh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 466777777755 489998888877543332 111 11112355666667777788899999999999998753
No 230
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=47.56 E-value=28 Score=28.49 Aligned_cols=70 Identities=9% Similarity=0.053 Sum_probs=54.0
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc--chhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhcc
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~~ 332 (464)
++..|.+-|.++++..+..|+..|-.+..+.. ....+.....+..|+.++...++.++...+..|...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45667777888899999999888877777543 34456666778888888877788999999998886654
No 231
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=47.52 E-value=3.5e+02 Score=30.42 Aligned_cols=177 Identities=6% Similarity=-0.037 Sum_probs=98.8
Q ss_pred chhHHHHHHHHHHHhhc-----CchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchHHHHhc
Q 012404 185 LPDQTEAAKELRLLTKR-----MPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNKKLVAE 259 (464)
Q Consensus 185 ~~~~~~a~~~L~~L~~~-----~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~ 259 (464)
...+.-|+..|.+..+. +++.|..|.+ ..+..+...-.... .....++..+..++..+...+-. ..
T Consensus 61 ~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~--~ll~~l~~~~~~~~---~~~~~vr~kla~~la~Ia~~d~p----~~ 131 (1204)
T 3a6p_A 61 AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN--SVMELIANGTLNIL---EEENHIKDALSRIVVEMIKREWP----QH 131 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH--HHHHHHHHSSCCTT---SSCHHHHHHHHHHHHHHHHHHST----TT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--HHHHHHHhhccccc---cccHHHHHHHHHHHHHHHHHhCc----cc
Confidence 45666777777776543 3344545544 23333322211000 12456677777777776654311 11
Q ss_pred CCCChHHHHHHHhcCCHHHHHHHHHHHHHhccc---Ccc----hh-----hhccc--CchHHHHHhccc-----------
Q 012404 260 TPMVIPLLMDALRSGTIETRSNAAAALFTLSAL---DSN----KE-----VIGKS--GALKPLIDLLDE----------- 314 (464)
Q Consensus 260 ~~~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~---~~~----~~-----~i~~~--g~i~~Lv~lL~~----------- 314 (464)
=+.+++.|+.++.+ ++..+..+..+|..|+.. .+. +. .+... .++..+..++..
T Consensus 132 Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 132 WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 24578888888866 556677788888887642 111 11 11111 233334444432
Q ss_pred --------CCHHHHHHHHHHHHHhccCchhhhHHHhc--CcHHHHHHHHcCCchHHHHHHHHHHhhCC
Q 012404 315 --------GHQSAMKDVASAIFNLCITHENKARAVRD--GGVSVILKKIMDGVHVDELLAILAMLSTN 372 (464)
Q Consensus 315 --------~~~~~~~~al~aL~~L~~~~~~~~~iv~~--g~v~~Lv~lL~~~~~~~~a~~~L~~L~~~ 372 (464)
.+..+...++.++.+...+-... .+++. ..++.+..++.++.++..|+.+|..+...
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~-~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVSMS-HITAENCKLLEILCLLLNEQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTC
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCHH-HHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhC
Confidence 12346667777777665543322 22232 36778887777788999999999999974
No 232
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.15 E-value=7.3 Score=35.78 Aligned_cols=32 Identities=6% Similarity=0.213 Sum_probs=27.3
Q ss_pred ccCccchhhccCcccCCCCccccHHHHHHHHHcC
Q 012404 84 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKAG 117 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~~ 117 (464)
.+||+|++.+....++|+ ...|+.|++|+..+
T Consensus 244 ~~cP~~~~~~~~~~l~~n--~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 244 HFNPVTRSPLTQEQLIPN--LAMKEVIDAFISEN 275 (281)
T ss_dssp SSCTTTCCCCCGGGCEEC--HHHHHHHHHHHTTC
T ss_pred CCCcCCCCCCchhcCccc--HHHHHHHHHHHHHC
Confidence 359999999988788887 67999999999863
No 233
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=44.36 E-value=1.3e+02 Score=33.16 Aligned_cols=144 Identities=7% Similarity=-0.033 Sum_probs=86.7
Q ss_pred ChhhHHHHHHHHHccccCcchHHHHhcCCCChHHHHHHHhcCCH-HHHHHHHHHHHHhccc--C-c-c------------
Q 012404 233 NPNLQEDVITTLLNLSIHDNNKKLVAETPMVIPLLMDALRSGTI-ETRSNAAAALFTLSAL--D-S-N------------ 295 (464)
Q Consensus 233 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~-~~~~~aa~~L~~Ls~~--~-~-~------------ 295 (464)
..-++.+.+.+|..+...+-. ..=+.+++-|+.++..++. .......++|..|+.. + . .
T Consensus 103 ~~~IrnKL~~~la~l~~~~~p----~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~l 178 (980)
T 3ibv_A 103 PAYISNAVQHLLTLLFLQLYP----SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLV 178 (980)
T ss_dssp CTHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCc----ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHH
Confidence 345677777777766543310 0223577778888876543 3444445555544321 1 0 0
Q ss_pred hhhhccc---CchHHHHHhccc----CCHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHcCCchHHHHHHHHHH
Q 012404 296 KEVIGKS---GALKPLIDLLDE----GHQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIMDGVHVDELLAILAM 368 (464)
Q Consensus 296 ~~~i~~~---g~i~~Lv~lL~~----~~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~~~a~~~L~~ 368 (464)
+..+.+. -+++....+|.. .++.+...++.+|.....+-.. ..+++.+.++.+.++|.++..++.|+.+|..
T Consensus 179 kd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~e 257 (980)
T 3ibv_A 179 KDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQIEELRCAACETMTE 257 (980)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1112111 113444444433 5778888999999888775442 3355668899999999888899999999999
Q ss_pred hhCC---HHHHHHHHh
Q 012404 369 LSTN---HRAVEEIGD 381 (464)
Q Consensus 369 L~~~---~~~~~~i~~ 381 (464)
+... ++.+..++.
T Consensus 258 i~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 258 IVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHSCCCHHHHHHHHH
T ss_pred HHHcCCChhhHHHHHH
Confidence 8864 555555543
No 234
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=44.29 E-value=6.6 Score=26.36 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=11.6
Q ss_pred CCCCcccCccchh
Q 012404 79 SCPEEFKCPLSKE 91 (464)
Q Consensus 79 ~~p~~f~CPi~~~ 91 (464)
++|+++.||+|+-
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 235
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.83 E-value=6.7 Score=26.68 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=12.0
Q ss_pred CCCCcccCccchhh
Q 012404 79 SCPEEFKCPLSKEL 92 (464)
Q Consensus 79 ~~p~~f~CPi~~~~ 92 (464)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 48999999999853
No 236
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=43.66 E-value=7.6 Score=28.71 Aligned_cols=14 Identities=21% Similarity=0.691 Sum_probs=12.2
Q ss_pred CCCCcccCccchhh
Q 012404 79 SCPEEFKCPLSKEL 92 (464)
Q Consensus 79 ~~p~~f~CPi~~~~ 92 (464)
++|+++.||+|+--
T Consensus 56 dlPddW~CPvCga~ 69 (81)
T 2kn9_A 56 DIPDDWSCPDCGAA 69 (81)
T ss_dssp TSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 59999999999864
No 237
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.58 E-value=8.1 Score=27.74 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=12.2
Q ss_pred CCCCcccCccchhh
Q 012404 79 SCPEEFKCPLSKEL 92 (464)
Q Consensus 79 ~~p~~f~CPi~~~~ 92 (464)
++|+++.||+|+--
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 58999999999864
No 238
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=38.80 E-value=47 Score=27.92 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=53.3
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccC--cchhhhcccCchHHHHHhccc-CCHHHHHHHHHHHHHhcc
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDE-GHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~al~aL~~L~~ 332 (464)
++..|.+-|+++++.++..|+.+|-.+..+- .....|.....+..|+.++.. .++.++..++..|..-+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4556777888899999999988888888763 334466667788888888875 478899988888876553
No 239
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=37.69 E-value=54 Score=27.05 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=55.2
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccC--cchhhhcccCchHHHHHhccc------CCHHHHHHHHHHHHHhcc
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDE------GHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~al~aL~~L~~ 332 (464)
++..|.+-|+++++.++..|+.+|-.+..+- .....|.....+..|+.++.. .++.++...+..|..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999888888764 345567777888999999874 267899988888876654
No 240
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.72 E-value=55 Score=29.14 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=51.8
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhcc
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICLS 414 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~ 414 (464)
++..|.+-|.++ .++..|+.+|..+..+ +.-..++.+...+..|++++....+..+++.++.++...+..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 455666666654 5677788888888875 445667777777788888887655688999999988877653
No 241
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=36.51 E-value=10 Score=28.38 Aligned_cols=14 Identities=21% Similarity=0.620 Sum_probs=12.2
Q ss_pred CCCCcccCccchhh
Q 012404 79 SCPEEFKCPLSKEL 92 (464)
Q Consensus 79 ~~p~~f~CPi~~~~ 92 (464)
++|+++.||+|+--
T Consensus 64 dlPddW~CPvCga~ 77 (87)
T 1s24_A 64 DIPDDWCCPDCGAT 77 (87)
T ss_dssp GCCTTCCCSSSCCC
T ss_pred HCCCCCCCCCCCCC
Confidence 69999999999853
No 242
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=35.21 E-value=67 Score=26.55 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=54.5
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccCc--chhhhcccCchHHHHHhccc------CCHHHHHHHHHHHHHhcc
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALDS--NKEVIGKSGALKPLIDLLDE------GHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~al~aL~~L~~ 332 (464)
++..|.+-|.++++.++..|+.+|-.+..+-. ....|.....+..|++++.. .++.++...+..|...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45567788888999999999998888887643 34567777788889999863 467889999888887654
No 243
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=33.91 E-value=67 Score=27.21 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=54.7
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHhcccC--cchhhhcccCchHHHHHhccc------CCHHHHHHHHHHHHHhcc
Q 012404 263 VIPLLMDALRSGTIETRSNAAAALFTLSALD--SNKEVIGKSGALKPLIDLLDE------GHQSAMKDVASAIFNLCI 332 (464)
Q Consensus 263 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~al~aL~~L~~ 332 (464)
++..|.+-|+++++.++..|+.+|-.+..+- .....|.....+..|+.++.. .+..++..++..|..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999888888764 345567777888999999863 267889999888876654
No 244
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=33.28 E-value=22 Score=32.26 Aligned_cols=12 Identities=8% Similarity=0.075 Sum_probs=6.6
Q ss_pred CCChhhHHHHHH
Q 012404 231 GINPNLQEDVIT 242 (464)
Q Consensus 231 ~~~~~~~~~A~~ 242 (464)
+.++.++..++.
T Consensus 157 D~d~~VR~~aa~ 168 (244)
T 1lrv_A 157 DEDRQVRKLVAK 168 (244)
T ss_dssp CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 445566665555
No 245
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=32.08 E-value=2.2e+02 Score=25.52 Aligned_cols=100 Identities=8% Similarity=0.004 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHHHhccCch-hhhHHHhcCcHHHHHHHHcC----------CchHHHHHHHHHHhhCCHH-HHHHHHh
Q 012404 314 EGHQSAMKDVASAIFNLCITHE-NKARAVRDGGVSVILKKIMD----------GVHVDELLAILAMLSTNHR-AVEEIGD 381 (464)
Q Consensus 314 ~~~~~~~~~al~aL~~L~~~~~-~~~~iv~~g~v~~Lv~lL~~----------~~~~~~a~~~L~~L~~~~~-~~~~i~~ 381 (464)
+.++..+--+++++.|+-.++. ++..+........+++.+.+ .+++-.++.++.|++..-- .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4467788899999999999988 77766554445566665532 1455567788888886311 010 1
Q ss_pred cCcHHHHHHHHhc--------cCChhHHHHHHHHHHHHhccCh
Q 012404 382 LGGVSCMLRIIRE--------STCDRNKENCIAILHTICLSDR 416 (464)
Q Consensus 382 ~g~i~~Lv~ll~~--------~~~~~~~~~A~~~L~~L~~~~~ 416 (464)
......+++++.. ..++++.-.++-+|.+|....+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2234455555542 1135666777777877776554
No 246
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=30.65 E-value=2.6e+02 Score=24.06 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=90.0
Q ss_pred HHHHHhcccC-CHHHHHHHHHHHHHhccCchhhhHHHhcCcHHHHHHHHc----C--C----chHHHHHHHHHHhhCCHH
Q 012404 306 KPLIDLLDEG-HQSAMKDVASAIFNLCITHENKARAVRDGGVSVILKKIM----D--G----VHVDELLAILAMLSTNHR 374 (464)
Q Consensus 306 ~~Lv~lL~~~-~~~~~~~al~aL~~L~~~~~~~~~iv~~g~v~~Lv~lL~----~--~----~~~~~a~~~L~~L~~~~~ 374 (464)
.-|.++|+.. +.+.......... -+ .-.--..++..|++.-|+.+-. . . +-..+++.+|..+-..++
T Consensus 69 kyladllktrddmdllnemvvvfr-ss-svsfiktfvsvgglanlmaiykkkieaensntaideerkccevlryvfaeed 146 (353)
T 4dvg_B 69 KYLADLLKTRDDMDLLNEMVVVFR-SS-SVSFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFAEED 146 (353)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHH-HS-CHHHHHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhccchHHHhhhheEEEe-cc-chhHHHHHhhhccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhccc
Confidence 4577888765 4444443333332 22 2233456788899888887653 1 1 234569999999888887
Q ss_pred HHHHHHhc-CcHHHHHHHHhccCChhHHHHHHHHHHHHhccC-----hh--------------hHHHHHHhh----ccHH
Q 012404 375 AVEEIGDL-GGVSCMLRIIRESTCDRNKENCIAILHTICLSD-----RT--------------KWKAMREEE----STHG 430 (464)
Q Consensus 375 ~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~-----~~--------------~~~~~~~~~----g~~~ 430 (464)
..-++++- ||+..|++=+.+. ..+-.+-+.+|..++..+ |. ....++.+. .++.
T Consensus 147 atvalieidggvelllkgmnsk--ritpdnqldilleitltssmvehpsqeglylggdvcvmnafsnlvsegvdmkkfls 224 (353)
T 4dvg_B 147 ATVALIEIDGGVELLLKGMNSK--RITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKFLS 224 (353)
T ss_dssp HHHHHHTSTTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHCSBCTTSTTCBCCHHHHHHHHHHHHHHTTSCSSTTHH
T ss_pred ceEEEEEecccHHHHhcccccC--cCCCccccceeeeEeehhhhhcCccccceeecCceeeehhhHHHHhccccHHHHHH
Confidence 77777665 7899888877642 233344555555554211 10 111222111 1222
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhccccccC
Q 012404 431 TISKLAQDGTARAKRKATGILERLKRTVNLTH 462 (464)
Q Consensus 431 ~L~~Ll~~g~~~~k~~A~~~L~~l~~~~~~~~ 462 (464)
.+.-...+.++.-|.....++.|+-+.+.+.|
T Consensus 225 ffslfsksksekfkhaslvlinnlidqpeleh 256 (353)
T 4dvg_B 225 FFSLFSKSKSEKFKHASLVLINNLIDQPELEH 256 (353)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHhhhhhhhcccceeehhhccccchhhHh
Confidence 23333466677888888888899988887766
No 247
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.35 E-value=49 Score=24.75 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=34.7
Q ss_pred cccCccchhhc---c--CcccCC--CCccccHHHHHHHHHcCCCCCCCCccccc
Q 012404 83 EFKCPLSKELM---R--DPVILA--SGQTFDRPYIQRWLKAGNRTCPRTQQVLS 129 (464)
Q Consensus 83 ~f~CPi~~~~m---~--dPv~~~--~g~~~~r~~I~~~~~~~~~~~P~~~~~l~ 129 (464)
.-.|.||++-. . +|.+.. |+...||.|.+.-..+++..||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 35789988642 1 232332 56677999999988888999999998875
No 248
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.90 E-value=81 Score=27.78 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=50.1
Q ss_pred cHHHHHHHHcCC--chHHHHHHHHHHhhCC--HHHHHHHHhcCcHHHHHHHHhccCChhHHHHHHHHHHHHhc
Q 012404 345 GVSVILKKIMDG--VHVDELLAILAMLSTN--HRAVEEIGDLGGVSCMLRIIRESTCDRNKENCIAILHTICL 413 (464)
Q Consensus 345 ~v~~Lv~lL~~~--~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~ 413 (464)
++..|.+-|.++ .++..|+.+|..+..+ +.-+.++.+...+..|+.++....+..+++.++.++..-+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 445566666654 5677789999988875 34556777767788888888765568899988888876654
No 249
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.56 E-value=16 Score=29.03 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=39.9
Q ss_pred CCcccCccchhhccC---cccCCCCccccHHHHHHHHHcCCCCCCCCcccccCCCC
Q 012404 81 PEEFKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSHTIL 133 (464)
Q Consensus 81 p~~f~CPi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~~~l 133 (464)
|+.|.|..|...+.| ......|..||+.+..+-+.. ...|..|++++....+
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 567999999999974 456668999999998886654 3479888888775443
No 250
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=28.69 E-value=93 Score=30.18 Aligned_cols=158 Identities=10% Similarity=0.038 Sum_probs=89.6
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccCCHHHHHHHHHHHHHhc--------cC
Q 012404 262 MVIPLLMDALRSGTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEGHQSAMKDVASAIFNLC--------IT 333 (464)
Q Consensus 262 ~~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~al~aL~~L~--------~~ 333 (464)
.+++.++.+-...+.++|+-.+..|...+..+ ...+ .-+++.|..||.++++.+.+.+..+..++- .+
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~--~el~--~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~ 138 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRD--IELL--LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKS 138 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47888888877788999999999998887532 1111 346778888888788888877766555442 22
Q ss_pred chhh---hHHHhc--CcHHHHHHHHcCC--chHHHHHHHHHHhhC--C---HH-----------------------HHHH
Q 012404 334 HENK---ARAVRD--GGVSVILKKIMDG--VHVDELLAILAMLST--N---HR-----------------------AVEE 378 (464)
Q Consensus 334 ~~~~---~~iv~~--g~v~~Lv~lL~~~--~~~~~a~~~L~~L~~--~---~~-----------------------~~~~ 378 (464)
+... ...-+. ..-..++.++.++ .++-.|+..+..+.- . ++ ....
T Consensus 139 ~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~ 218 (386)
T 3o2t_A 139 RVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNV 218 (386)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHH
Confidence 1110 011100 1122333444433 566667766665431 0 00 1122
Q ss_pred HHhc--CcHHHHHHHHhcc-CChhHHHHHHHHHHHHhccChhhHHHHH
Q 012404 379 IGDL--GGVSCMLRIIRES-TCDRNKENCIAILHTICLSDRTKWKAMR 423 (464)
Q Consensus 379 i~~~--g~i~~Lv~ll~~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~ 423 (464)
+... +.+..|+.+++.. .++..-...+..|..|+..-|.....++
T Consensus 219 Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl 266 (386)
T 3o2t_A 219 LWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVI 266 (386)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 3222 4577888888753 2344445577777777777765544443
No 251
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=27.68 E-value=91 Score=25.84 Aligned_cols=73 Identities=5% Similarity=0.131 Sum_probs=50.9
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHH-HHHHHhhc--C-CHHHHHHHHHHHHHHhc
Q 012404 384 GVSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHG-TISKLAQD--G-TARAKRKATGILERLKR 456 (464)
Q Consensus 384 ~i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~-~L~~Ll~~--g-~~~~k~~A~~~L~~l~~ 456 (464)
++..|.+-|+.+.++.++..|+.+|-.+..+....+...+....++. .|++++.. . ...+|++...++...+.
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 35667777764334777888999999988887766555554445664 46777643 2 34699999999998763
No 252
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=27.52 E-value=14 Score=28.02 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=34.0
Q ss_pred cccCccchhhccCcccCCCCccc-cHHHHHHHHHcCCCCCCCCcccccCC
Q 012404 83 EFKCPLSKELMRDPVILASGQTF-DRPYIQRWLKAGNRTCPRTQQVLSHT 131 (464)
Q Consensus 83 ~f~CPi~~~~m~dPv~~~~g~~~-~r~~I~~~~~~~~~~~P~~~~~l~~~ 131 (464)
-+.|--|..-.+ -++.|..+| |+.|+..-+.. ...||+|+.+|...
T Consensus 28 ~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred cccChhhccccC--CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 467777765444 566665555 99999988876 67899999998643
No 253
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=27.35 E-value=1.1e+02 Score=25.26 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=54.6
Q ss_pred hhhHHHHHHhhcC--CchhHHHHHHHHHHHhhcC-chhhhhhhhcCCchhh-hhhhcccccccCCCChhhHHHHHHHHHc
Q 012404 171 RDHFLSLLKKMSA--TLPDQTEAAKELRLLTKRM-PSFRALFGESHDAIPQ-LLSPLSESKCENGINPNLQEDVITTLLN 246 (464)
Q Consensus 171 ~~~i~~Lv~~Ls~--~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~~g~i~~-Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 246 (464)
.++++.+.+.|.+ ++.++..|+..|-.+.+.. ...+..+.+ ...+.. |+.++.... ..+..+++.++..|..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~-~~fl~e~Lvk~~~~k~---~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS-QDFVESVLVRTILPKN---NPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHTHHHHSTTT---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh-HHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHH
Confidence 5678888888963 4678888999888888854 456777777 788887 788875311 2345788888888877
Q ss_pred ccc
Q 012404 247 LSI 249 (464)
Q Consensus 247 Ls~ 249 (464)
.+.
T Consensus 128 W~~ 130 (157)
T 1elk_A 128 WAD 130 (157)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 254
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=25.81 E-value=20 Score=39.03 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=27.9
Q ss_pred ccCccchhhccCcccCCCCccccHHHHHHHHHc
Q 012404 84 FKCPLSKELMRDPVILASGQTFDRPYIQRWLKA 116 (464)
Q Consensus 84 f~CPi~~~~m~dPv~~~~g~~~~r~~I~~~~~~ 116 (464)
-+||+|++.+..-.++|+ .-.|+.|++|+..
T Consensus 927 ~tdP~Tr~~L~~~~liPN--~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 927 STDPFNRMPLKLEDVTPN--EELRQKILCFKKQ 957 (968)
T ss_dssp CBCTTTCCBCCGGGCEEC--HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCccccccc--HHHHHHHHHHHHH
Confidence 489999999998889997 6799999999975
No 255
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=25.74 E-value=4.1e+02 Score=24.75 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhhcCchhhhhhhhcCCchhhhhhhcccccccCCCChhhHHHHHHHHHccccCcchH-HHHh-cCCCCh
Q 012404 187 DQTEAAKELRLLTKRMPSFRALFGESHDAIPQLLSPLSESKCENGINPNLQEDVITTLLNLSIHDNNK-KLVA-ETPMVI 264 (464)
Q Consensus 187 ~~~~a~~~L~~L~~~~~~~r~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~Ls~~~~~~-~~i~-~~~~~i 264 (464)
.-..|+-.|..++. +-..--.|.+ .. ...|-.++-.. ..++.+++.|.++|...-.+.... ..+. ..+.++
T Consensus 44 ~le~aLD~L~ElSH-Di~~G~KI~~-~e-f~lL~nL~~~~----~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv 116 (315)
T 3qml_C 44 RLEDSFDRIMEFAH-DYKHGYKIIT-HE-FALLANLSLNE----NLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFK 116 (315)
T ss_dssp HHHHHHHHHGGGTT-SHHHHHHHHH-HH-HHHHHHHHHCT----TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHhhh-hHHhhhHHHh-Cc-HHHHHHHHhhc----cCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHH
Confidence 34567777778877 3444344443 11 23333332111 235678899999888766655422 2222 233444
Q ss_pred HHHHHHHhc-------CCHHHHHHHHHHHHHhcccCcchhhhcccCchHHHHHhcccC--CHHHHHHHHHHHHHhc
Q 012404 265 PLLMDALRS-------GTIETRSNAAAALFTLSALDSNKEVIGKSGALKPLIDLLDEG--HQSAMKDVASAIFNLC 331 (464)
Q Consensus 265 ~~Lv~lL~~-------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~al~aL~~L~ 331 (464)
..+..-|.. ......+.-+.+|..|..+. ..+ ....+..|.+++... ++.++..++..+..+-
T Consensus 117 ~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 117 SKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 444433332 23455666677777787765 223 244668888888777 8888888888777554
No 256
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.54 E-value=65 Score=27.78 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=8.9
Q ss_pred cccCccchhhcc
Q 012404 83 EFKCPLSKELMR 94 (464)
Q Consensus 83 ~f~CPi~~~~m~ 94 (464)
.+.|++|+.+..
T Consensus 155 ~~~C~~CG~~~~ 166 (191)
T 1lko_A 155 KWRCRNCGYVHE 166 (191)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEECCCCCEee
Confidence 588888877754
No 257
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.46 E-value=1.6e+02 Score=23.92 Aligned_cols=72 Identities=8% Similarity=0.166 Sum_probs=47.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHhccChhhHHHHHHhhccHHHHHHHh------h--cC-C--HHHHHHHHHHHHH
Q 012404 385 VSCMLRIIRESTCDRNKENCIAILHTICLSDRTKWKAMREEESTHGTISKLA------Q--DG-T--ARAKRKATGILER 453 (464)
Q Consensus 385 i~~Lv~ll~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~Ll------~--~g-~--~~~k~~A~~~L~~ 453 (464)
+..|.+-|... ++..+-.|+.+|..|+.+..+.+..-+.. -...+..+. + .| + ..++.+|..++..
T Consensus 51 m~~L~kRL~~k-~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~--~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 51 SEFILKRLDNK-SPIVKQKALRLIKYAVGKSGSEFRREMQR--NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHH--TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CcceeehHHHHHHHHHHhCCHHHHHHHHH--hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 45666667654 48899999999999998776655444331 112233332 1 23 2 3589999999999
Q ss_pred Hhcccc
Q 012404 454 LKRTVN 459 (464)
Q Consensus 454 l~~~~~ 459 (464)
|.....
T Consensus 128 l~d~~~ 133 (140)
T 1vdy_A 128 IFSEEN 133 (140)
T ss_dssp HTCCSS
T ss_pred HhCcCC
Confidence 876543
No 258
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.82 E-value=23 Score=19.65 Aligned_cols=12 Identities=25% Similarity=0.880 Sum_probs=9.4
Q ss_pred ccCccchhhccC
Q 012404 84 FKCPLSKELMRD 95 (464)
Q Consensus 84 f~CPi~~~~m~d 95 (464)
..||+|.+.|-.
T Consensus 7 vqcpvcqq~mpa 18 (29)
T 3vhs_A 7 VQCPVCQQMMPA 18 (29)
T ss_dssp EECTTTCCEEEG
T ss_pred eeChHHHHhCcH
Confidence 469999998853
No 259
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.49 E-value=1.6e+02 Score=25.61 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=11.2
Q ss_pred CCCCcccCccchhhcc
Q 012404 79 SCPEEFKCPLSKELMR 94 (464)
Q Consensus 79 ~~p~~f~CPi~~~~m~ 94 (464)
+-...+.|++|+-+..
T Consensus 167 ~~~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 167 DDDKFHLCPICGYIHK 182 (202)
T ss_dssp CSCCEEECSSSCCEEE
T ss_pred CCCcEEEECCCCCEEc
Confidence 3345788999887754
No 260
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.42 E-value=49 Score=26.25 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=38.2
Q ss_pred CCcccCccchhhccC---cccCCCCccccHHHHHHHHHcCCCCCCCCcccccC
Q 012404 81 PEEFKCPLSKELMRD---PVILASGQTFDRPYIQRWLKAGNRTCPRTQQVLSH 130 (464)
Q Consensus 81 p~~f~CPi~~~~m~d---Pv~~~~g~~~~r~~I~~~~~~~~~~~P~~~~~l~~ 130 (464)
|+.|.|..+...+.+ +.....|..|++.+-.+-+.. ...|+.+++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 678999999999863 556678999999988776543 2379999888764
No 261
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.17 E-value=35 Score=24.23 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=19.5
Q ss_pred ccCCccccCCCCCCChHHHHHHHHHHHHH
Q 012404 10 HRTGIFDSDPTVMPKATELKKELQKLVRL 38 (464)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (464)
.+-||=.+||..+|+ +|..+|++.
T Consensus 38 ~kLGI~ktdP~~LT~-----eEi~~FaRL 61 (71)
T 2eo2_A 38 KKLGIHKTDPSTLTE-----EEVRKFARL 61 (71)
T ss_dssp HHHTCCCCSTTTCCH-----HHHHHHHHT
T ss_pred HHcCCCCCCcccCCH-----HHHhhceec
Confidence 467999999999998 688888763
Done!