Citrus Sinensis ID: 012405

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQSVSDFRGGSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNSYGSSSWDDWDQKDKKEDTPKGTGSGNNDAWAGWDDAKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL
cHHHHHHHHHHccccccccccccccccccccccccEEEEEcccccccccccEEEEEEccccccccHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHccccccccccccccEccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MAATRRlrdlqsqpgnkicvdcaqknpqwasVSYGVFMCLecsgkhrglgvHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLsqygipketdivTKYNTNAASIYRDRIQAIaegrpwrdppvvketlnagksssrpplaqsasvggvgrngnygnhggwdswdnddfrssndmrrnqsvsdfrggsggmggmpasrsksteDIYTRAELEASaankegffsrkiaenearpeglppsqggkyvgfgstppptqrntnsqgdVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKvreggydhkvnETVNVVTAktseigqrTWGIMKGVMAMASQKVEEYTKegwnndnwqrnesesngyyqefnhgnkgqdspagggqysaghhnsygssswddwdqkdkkedtpkgtgsgnndawagwddakddgydnfyqsasdkkalghngksdatwtgggfl
maatrrlrdlqsqpgnkICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIaegrpwrdppVVKETlnagksssrpplaqsasvggVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQsvsdfrggsggmggmpasrskSTEDIYTRAELEasaankegffSRKIAenearpeglppsqGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTskvreggydhkvnetvnvvtaktseigqrtwgIMKGVMAMASQKVEEYTKegwnndnwQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNSYGSSSWDDWDQKDKKedtpkgtgsgnndawagWDDAKDDGYDNFYQSasdkkalghngksdatwtgggfl
MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVggvgrngnygnhggWDSWDNDDFRSSNDMRRNQSVSDFRggsggmggmPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLvaasaaqsaatvvqaGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNSYGssswddwdqkdkkedTPKGTGSgnndawagwddakddgydnFYQSASDKKALGHNGKSDATWTGGGFL
****************KICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW******************************************************************************************************************************************************QGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYT***W***********************************************************************WAGW*************************************
***TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRI***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************T*GGFL
**********QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKET*****************VGGVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQSVSDFRG*****************DIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLV*************AGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNS************************GNNDAWAGWDDAKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL
MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW***************************************************************************************TRAELEAS*ANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKV************************************************************************************************************************
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MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQSVSDFRGGSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGQDSPAGGGQYSAGHHNSYGSSSWDDWDQKDKKEDTPKGTGSGNNDAWAGWDDAKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query464 2.2.26 [Sep-21-2011]
Q9M354459 Probable ADP-ribosylation yes no 0.959 0.969 0.677 1e-166
O80925456 ADP-ribosylation factor G no no 0.956 0.973 0.655 1e-163
P35197352 ADP-ribosylation factor G yes no 0.545 0.718 0.332 6e-36
Q8N6T3406 ADP-ribosylation factor G yes no 0.411 0.470 0.375 4e-34
Q9EPJ9414 ADP-ribosylation factor G yes no 0.359 0.403 0.392 3e-33
Q62848415 ADP-ribosylation factor G yes no 0.377 0.421 0.382 7e-33
Q17R07517 ADP-ribosylation factor G no no 0.232 0.208 0.509 1e-29
Q9D8S3523 ADP-ribosylation factor G no no 0.239 0.212 0.5 1e-29
Q4KLN7525 ADP-ribosylation factor G no no 0.239 0.211 0.5 1e-29
Q4R4C9516 ADP-ribosylation factor G N/A no 0.232 0.209 0.490 5e-29
>sp|Q9M354|AGD6_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1 Back     alignment and function desciption
 Score =  583 bits (1504), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 324/478 (67%), Positives = 373/478 (78%), Gaps = 33/478 (6%)

Query: 1   MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
           MAATR+LR LQSQP NK+CVDCAQKNPQWASVSYG+FMCLECSGKHRGLGVHISFVRSVT
Sbjct: 1   MAATRQLRTLQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVT 60

Query: 61  MDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
           MDSWS IQIKKMEAGGNERLN F +QYGI KETDI++KYN+NAAS+YRDRIQA+AEGRPW
Sbjct: 61  MDSWSAIQIKKMEAGGNERLNKFFAQYGIAKETDIISKYNSNAASVYRDRIQALAEGRPW 120

Query: 121 RDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGGWDSWDNDDFRSSNDMRRNQ 180
            DPPVVKE      ++ +PPLAQ         N N  N+GGWDSWDNDD   S DMRRNQ
Sbjct: 121 NDPPVVKE------ANKKPPLAQGGY-----GNNNNNNNGGWDSWDNDDSYKS-DMRRNQ 168

Query: 181 SVSDFRGGSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPS 240
           S +DFR  SG   G    +SKS+EDIYTR++LEASAA KE FF+R++AENE++PEGLPPS
Sbjct: 169 SANDFR-ASGNREGAHV-KSKSSEDIYTRSQLEASAAGKESFFARRMAENESKPEGLPPS 226

Query: 241 QGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTS 300
           QGGKYVGFGS+  P  RN N Q DV S VSQGFGR+SLVAASAAQSAA+VVQ GT+EFTS
Sbjct: 227 QGGKYVGFGSSSAPPPRN-NQQDDVFSVVSQGFGRLSLVAASAAQSAASVVQTGTKEFTS 285

Query: 301 KVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEG---WNNDNW 357
           KV+EGGYDHKV+ETVNVV  KT+EIG RTWGIMKGVMAMA+QKVEE+TKEG   WN    
Sbjct: 286 KVKEGGYDHKVSETVNVVANKTTEIGHRTWGIMKGVMAMATQKVEEFTKEGSTSWN---- 341

Query: 358 QRNESESNGYYQEFNHGNKGQDSPAGGGQ----YSAGHH-NSYGSSSWDDWDQKDKKED- 411
           Q++E+E NGYYQ F +GNK  +S  GGG+     ++GH+ NS  S+SWD W + + K+  
Sbjct: 342 QQSENEGNGYYQNFGNGNKAANSSVGGGRPQSSSTSGHYNNSQNSNSWDSWGENENKKTE 401

Query: 412 --TPKGTGSGN---NDAWAGWDDAKDDGYDNFYQSASDKKALGHNGKSDATWTGGGFL 464
              PKG+ + N           DAKDDG+D  YQSA DKK+ GHNGKSD  WTGGGFL
Sbjct: 402 AVAPKGSSASNDDDGWTGWDDHDAKDDGFDGHYQSAGDKKSAGHNGKSDTAWTGGGFL 459
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|O80925|AGD7_ARATH ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1 Back     alignment and function description
>sp|P35197|GCS1_YEAST ADP-ribosylation factor GTPase-activating protein GCS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8N6T3|ARFG1_HUMAN ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9EPJ9|ARFG1_MOUSE ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2 Back     alignment and function description
>sp|Q62848|ARFG1_RAT ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1 Back     alignment and function description
>sp|Q17R07|ARFG3_BOVIN ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2 Back     alignment and function description
>sp|Q4KLN7|ARFG3_RAT ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1 Back     alignment and function description
>sp|Q4R4C9|ARFG3_MACFA ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
255573655457 arf gtpase-activating protein, putative 0.967 0.982 0.777 0.0
356548138481 PREDICTED: ADP-ribosylation factor GTPas 0.954 0.920 0.661 0.0
225440296465 PREDICTED: probable ADP-ribosylation fac 0.984 0.982 0.758 1e-180
224090669471 predicted protein [Populus trichocarpa] 0.989 0.974 0.733 1e-180
224138766472 predicted protein [Populus trichocarpa] 0.989 0.972 0.728 1e-179
449520305471 PREDICTED: probable ADP-ribosylation fac 0.974 0.959 0.724 1e-179
356537311479 PREDICTED: ADP-ribosylation factor GTPas 0.948 0.918 0.662 1e-178
449439984457 PREDICTED: LOW QUALITY PROTEIN: ADP-ribo 0.956 0.971 0.721 1e-174
84453190477 putative Asp1 [Trifolium pratense] gi|84 0.946 0.920 0.649 1e-173
76573333468 unknown [Solanum tuberosum] 0.978 0.970 0.688 1e-173
>gi|255573655|ref|XP_002527750.1| arf gtpase-activating protein, putative [Ricinus communis] gi|223532891|gb|EEF34663.1| arf gtpase-activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/472 (77%), Positives = 405/472 (85%), Gaps = 23/472 (4%)

Query: 1   MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
           MAA+RRLRDLQSQPGNKICVDC+QKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT
Sbjct: 1   MAASRRLRDLQSQPGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60

Query: 61  MDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
           MDSWSEIQIKKMEAGGNE+LN FLSQYG+PKETDIV KYNTNAAS+YRDRIQA+AEGRPW
Sbjct: 61  MDSWSEIQIKKMEAGGNEKLNAFLSQYGVPKETDIVAKYNTNAASVYRDRIQALAEGRPW 120

Query: 121 RDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGGWDSWDNDD-FR-SSNDMRR 178
           RDPPVVKET+ +  S  +PPL QS            GN+GGWDSWDNDD +R SSNDMRR
Sbjct: 121 RDPPVVKETIGSTSSKKKPPLGQSG-----------GNNGGWDSWDNDDSYRSSSNDMRR 169

Query: 179 NQSVSDFRGGSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLP 238
           NQSVSDFRG +G   G    RS+STED+YTR++LEASAANKE FF+RK+AEN++RPEGLP
Sbjct: 170 NQSVSDFRGNNGNGAGGMPVRSRSTEDMYTRSQLEASAANKESFFARKMAENDSRPEGLP 229

Query: 239 PSQGGKYVGFGSTPPPTQRNT--NSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTR 296
           PSQGGKYVGFGS P P+ RN   NSQ DV S +SQGFGR+SL AASAAQSAA+VVQA T+
Sbjct: 230 PSQGGKYVGFGSGPAPSNRNINNNSQPDVFSVMSQGFGRLSLAAASAAQSAASVVQASTK 289

Query: 297 EFTSKVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDN 356
           E TSKV+EGGYD+KVNETVNVVTAKT+EIGQ+TWGIMKGVMA+ASQKVEEY KEG     
Sbjct: 290 EITSKVKEGGYDYKVNETVNVVTAKTTEIGQKTWGIMKGVMAIASQKVEEYAKEG----G 345

Query: 357 WQRNESESNGYYQEFN-HGNKG-QDSPAGGGQYSAGHHNSYGSSSWDDWDQKD-KKEDTP 413
           WQRNESESNGYYQEFN   NKG   S AGG   S+GH+NSY S+SWDDWDQKD +KED+ 
Sbjct: 346 WQRNESESNGYYQEFNKQENKGWNSSSAGGQSSSSGHYNSYSSNSWDDWDQKDTRKEDSI 405

Query: 414 KGTGSGNNDAWAGWDDAKDDGY-DNFYQSASDKKALGHNGKSDATWTGGGFL 464
           K TGS NND WAGWDDAKD+G+ DNFYQSA DKKA+GHNGKSDATWTGGGFL
Sbjct: 406 KVTGSHNNDGWAGWDDAKDEGFDDNFYQSAPDKKAVGHNGKSDATWTGGGFL 457

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356548138|ref|XP_003542460.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD7-like [Glycine max] Back     alignment and taxonomy information
>gi|225440296|ref|XP_002262606.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224090669|ref|XP_002309050.1| predicted protein [Populus trichocarpa] gi|222855026|gb|EEE92573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224138766|ref|XP_002322896.1| predicted protein [Populus trichocarpa] gi|222867526|gb|EEF04657.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449520305|ref|XP_004167174.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356537311|ref|XP_003537172.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD7-like [Glycine max] Back     alignment and taxonomy information
>gi|449439984|ref|XP_004137765.1| PREDICTED: LOW QUALITY PROTEIN: ADP-ribosylation factor GTPase-activating protein AGD7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|84453190|dbj|BAE71192.1| putative Asp1 [Trifolium pratense] gi|84468406|dbj|BAE71286.1| putative Asp1 [Trifolium pratense] Back     alignment and taxonomy information
>gi|76573333|gb|ABA46771.1| unknown [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
TAIR|locus:2084360459 AGD6 "AT3G53710" [Arabidopsis 0.965 0.976 0.608 1.5e-145
TAIR|locus:2040691456 AGD7 "AT2G37550" [Arabidopsis 0.965 0.982 0.597 1.8e-142
FB|FBgn0020655468 ArfGAP1 "ADP-ribosylation fact 0.252 0.25 0.521 5.4e-51
UNIPROTKB|Q8N6T3406 ARFGAP1 "ADP-ribosylation fact 0.381 0.435 0.392 2.6e-47
UNIPROTKB|E2RHR0417 ARFGAP1 "Uncharacterized prote 0.362 0.402 0.4 1.3e-44
UNIPROTKB|E5RHC5261 ARFGAP1 "ADP-ribosylation fact 0.381 0.678 0.392 2.5e-41
UNIPROTKB|F1N8K3419 ARFGAP1 "Uncharacterized prote 0.362 0.400 0.410 1.7e-40
UNIPROTKB|Q08DK2405 ARFGAP3 "Uncharacterized prote 0.377 0.432 0.398 4.6e-40
ZFIN|ZDB-GENE-041114-130394 arfgap1 "ADP-ribosylation fact 0.355 0.418 0.387 3.2e-39
UNIPROTKB|Q3S4A5403 Arfgap1 "ADP-ribosylation fact 0.370 0.426 0.381 6.5e-39
TAIR|locus:2084360 AGD6 "AT3G53710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1422 (505.6 bits), Expect = 1.5e-145, P = 1.5e-145
 Identities = 289/475 (60%), Positives = 333/475 (70%)

Query:     1 MAATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVT 60
             MAATR+LR LQSQP NK+CVDCAQKNPQWASVSYG+FMCLECSGKHRGLGVHISFVRSVT
Sbjct:     1 MAATRQLRTLQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVT 60

Query:    61 MDSWSEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
             MDSWS IQIKKMEAGGNERLN F +QYGI KETDI++KYN+NAAS+YRDRIQA+AEGRPW
Sbjct:    61 MDSWSAIQIKKMEAGGNERLNKFFAQYGIAKETDIISKYNSNAASVYRDRIQALAEGRPW 120

Query:   121 RDPPVVKETLNAGKSSSRPPLAQSASVXXXXXXXXXXXXXXWDSWDNDDFRSSNDMRRNQ 180
              DPPVVKE      ++ +PPLAQ                  WDSWDNDD   S DMRRNQ
Sbjct:   121 NDPPVVKE------ANKKPPLAQGG-----YGNNNNNNNGGWDSWDNDDSYKS-DMRRNQ 168

Query:   181 SVSDFRXXXXXXXXXPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPS 240
             S +DFR            +SKS+EDIYTR++LEASAA KE FF+R++AENE++PEGLPPS
Sbjct:   169 SANDFRASGNREGAHV--KSKSSEDIYTRSQLEASAAGKESFFARRMAENESKPEGLPPS 226

Query:   241 QGGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLXXXXXXXXXXXXXXXGTREFTS 300
             QGGKYVGFGS+  P  RN N Q DV S VSQGFGR+SL               GT+EFTS
Sbjct:   227 QGGKYVGFGSSSAPPPRN-NQQDDVFSVVSQGFGRLSLVAASAAQSAASVVQTGTKEFTS 285

Query:   301 KVREGGYDHKVNETVNVVTAKTSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRN 360
             KV+EGGYDHKV+ETVNVV  KT+EIG RTWGIMKGVMAMA+QKVEE+TKEG  + N Q++
Sbjct:   286 KVKEGGYDHKVSETVNVVANKTTEIGHRTWGIMKGVMAMATQKVEEFTKEGSTSWN-QQS 344

Query:   361 ESESNGYYQEFNHGNKGQDSPAGGGQ----YSAGHHNSYGXXXXXXXXXXXXXXXT---- 412
             E+E NGYYQ F +GNK  +S  GGG+     ++GH+N+                 T    
Sbjct:   345 ENEGNGYYQNFGNGNKAANSSVGGGRPQSSSTSGHYNNSQNSNSWDSWGENENKKTEAVA 404

Query:   413 PKGTGSXXXXXXXXXXXXXXXXXXXF---YQSASDKKALGHNGKSDATWTGGGFL 464
             PKG+ +                   F   YQSA DKK+ GHNGKSD  WTGGGFL
Sbjct:   405 PKGSSASNDDDGWTGWDDHDAKDDGFDGHYQSAGDKKSAGHNGKSDTAWTGGGFL 459
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISS;IDA
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2040691 AGD7 "AT2G37550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0020655 ArfGAP1 "ADP-ribosylation factor GTPase activating protein 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N6T3 ARFGAP1 "ADP-ribosylation factor GTPase-activating protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHR0 ARFGAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E5RHC5 ARFGAP1 "ADP-ribosylation factor GTPase-activating protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8K3 ARFGAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DK2 ARFGAP3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-130 arfgap1 "ADP-ribosylation factor GTPase activating protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3S4A5 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1 brain isoform" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M354AGD6_ARATHNo assigned EC number0.67780.95900.9694yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021286001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (465 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 6e-47
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 1e-41
COG5347319 COG5347, COG5347, GTPase-activating protein that r 5e-37
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 1e-27
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 2e-06
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 3e-06
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  157 bits (400), Expect = 6e-47
 Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 4/110 (3%)

Query: 5   RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW 64
           R LR+L+  PGNK+C DC   NP WAS++ G+F+C+ CSG HR LGVHIS VRS+T+D W
Sbjct: 2   RLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKW 61

Query: 65  SEIQIKKMEAGGNERLNTFLSQYGIPKE----TDIVTKYNTNAASIYRDR 110
           +  Q++ M+AGGN+R N F      P +    +    K  +   + Y ++
Sbjct: 62  TPEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEK 111

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 464
KOG0704386 consensus ADP-ribosylation factor GTPase activator 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 100.0
KOG0706454 consensus Predicted GTPase-activating protein [Sig 100.0
PLN03114395 ADP-ribosylation factor GTPase-activating protein 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.95
PLN03131 705 hypothetical protein; Provisional 99.95
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.84
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.76
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.61
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.53
KOG0702524 consensus Predicted GTPase-activating protein [Sig 99.35
KOG0521785 consensus Putative GTPase activating proteins (GAP 86.13
PRK00085247 recO DNA repair protein RecO; Reviewed 82.68
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-95  Score=728.74  Aligned_cols=374  Identities=51%  Similarity=0.873  Sum_probs=316.9

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012405            3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT   82 (464)
Q Consensus         3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~   82 (464)
                      +||+|++|+...+|++||||+++|||||||+|||||||+|+|+||+||||||||||||||+|+++||++|++|||+++++
T Consensus         6 trr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMeaGGN~~~~e   85 (386)
T KOG0704|consen    6 TRRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKMEAGGNERFRE   85 (386)
T ss_pred             HHHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHHHhccchhHHH
Confidence            77888888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCCC-CcccccCChhHHHHHHHHHHHHcCCCCCCCchhhhhcccCCCCCCCCCcccCCCCCcCCCCCCCCCCC
Q 012405           83 FLSQYGIPKET-DIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKETLNAGKSSSRPPLAQSASVGGVGRNGNYGNHGG  161 (464)
Q Consensus        83 f~ea~~~~~e~-~I~~KY~s~aa~~YrekL~a~~eGr~w~~pP~~~E~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  161 (464)
                      ||+.+++.++. +|++||++++|++||+||++++|||+|.+||+++|..++  +..+|.   .                 
T Consensus        86 FL~s~~~~~e~~~i~eKYns~aAa~yRdki~~laegr~w~d~~~~k~~~p~--~syt~a---~-----------------  143 (386)
T KOG0704|consen   86 FLSSQGIYKETWPIREKYNSRAAALYRDKIAALAEGREWNDPPYLKEDNPA--QSYTSA---A-----------------  143 (386)
T ss_pred             HHhhCccccccccHHHhhccHHHHHHHHHHHHHhcCCcccccccccccCcc--cccccC---C-----------------
Confidence            99998866655 999999999999999999999999999999999998753  222320   0                 


Q ss_pred             CCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHhhhchhhhhHhhhhhccCCCCCCCCC
Q 012405          162 WDSWDNDDFRSSNDMRRNQSVSDFRGGSGGMGGMPASRSKSTEDIYTRAELEASAANKEGFFSRKIAENEARPEGLPPSQ  241 (464)
Q Consensus       162 ~~~w~~~~~~~~~~~~r~~s~~~~~~~~~~~~~~p~~~s~s~~~~y~~~q~~~s~~~~e~yFa~~g~~NasrPe~lpPSQ  241 (464)
                                                        + ..+.++..+|+..|++++++.+|.||++++.+|++|||+|||||
T Consensus       144 ----------------------------------~-~~~~ss~~~~~~sq~~~~~~~ke~~fa~~~~~n~srpd~lppsQ  188 (386)
T KOG0704|consen  144 ----------------------------------Q-LGSKSSETIYTISQLSNSAAGKESYFAKRLSENQSRPDGLPPSQ  188 (386)
T ss_pred             ----------------------------------C-cCCCcCCcccccccchhhhcchhHHHHHhcccccCCCCCCCccc
Confidence                                              0 11112223456667788889999999999999999999999999


Q ss_pred             CCcccccCCCCCCCCCCCCCccchhHHHhhchhhhHhhHHHHHHHHHHHhhhhhhhhhhhhccCccccccccceeeeeee
Q 012405          242 GGKYVGFGSTPPPTQRNTNSQGDVLSAVSQGFGRISLVAASAAQSAATVVQAGTREFTSKVREGGYDHKVNETVNVVTAK  321 (464)
Q Consensus       242 GGKY~GFGntp~p~~~~~~~~~d~~ssls~Gwg~fS~~a~~aa~~a~~~~~~~~~~~~~kv~eg~~~~~v~~~v~~~a~K  321 (464)
                      ||||+|||+|+.|||+... ++|+|++|+.||++||++|++||+    |++.++..+. ||||| |++.|++.|++||.|
T Consensus       189 ggkY~GFGst~~~ppqs~~-~~~~~s~ls~Gws~~s~~as~~a~----~~~~~~~~~s-kvkeg-l~~~~s~~v~~va~k  261 (386)
T KOG0704|consen  189 GGKYQGFGSTNAPPPQSNS-QDDAMSVLSSGWSRLSTGASSAAS----VGQTATQKAS-KVKEG-LDDFVSDPVGTVASK  261 (386)
T ss_pred             CCcccccCCCCCCCCcccc-ccchhhhhccccccccchhhhhhh----hhhhhhhhhh-hhhhh-hhhhcccchhhhhhh
Confidence            9999999999888886432 338999999999999999998775    7777777776 99999 999999999999999


Q ss_pred             ccccccccccchhhhHHhhhhhhhhhhccCCCCcccccccCCCCcccccccCCCCCCCCCCCCCC-CCCCCCCCC-CCCC
Q 012405          322 TSEIGQRTWGIMKGVMAMASQKVEEYTKEGWNNDNWQRNESESNGYYQEFNHGNKGQDSPAGGGQ-YSAGHHNSY-GSSS  399 (464)
Q Consensus       322 ~~e~g~~gw~~~~~~~~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~yq~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~  399 (464)
                      |+|||+|||++|+   ++++|++|++          |+++..+++|||.+.++|..=|+..++.+ ++-+|.+++ ++++
T Consensus       262 ~t~vG~r~W~~ls---~~~sq~~e~f----------q~~~s~g~~~~qn~~~~n~~sn~~~g~~q~~~~~~~~s~~~s~s  328 (386)
T KOG0704|consen  262 VTEVGTRGWGLLS---AAVSQSVEDF----------QDSESVGGPYYQNSGQGNFSSNSKRGGWQFSSKGHEKSSLPSNS  328 (386)
T ss_pred             cccccccchhhhH---Hhhccccccc----------cccCccCCccccccccccccccccccccccccccccccCCCCcc
Confidence            9999999999887   8899999988          78888899999999998876566655555 345666555 8999


Q ss_pred             CCcCCcCCCC-CCCCCCCC-CCCCCCCcccc--CCCCCCccccccccccccccCCCCCCCCcc
Q 012405          400 WDDWDQKDKK-EDTPKGTG-SGNNDAWAGWD--DAKDDGYDNFYQSASDKKALGHNGKSDATW  458 (464)
Q Consensus       400 w~~w~~~~~~-~~~~~~~~-~~~~~~w~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  458 (464)
                      |+.|...+.. ....++++ ..++.+|+|||  ++++|  +-+|+.+++|   .|+|+.|.+|
T Consensus       329 ~s~~~~n~~~~~s~~~gta~~~~ds~~~g~e~~~~k~~--~~~~~~a~dk---s~~g~~d~aw  386 (386)
T KOG0704|consen  329 FSCFTENDQNSSSDSKGTASADDDSGWSGFEASDAKDD--ETSYQNAPDK---SHDGWDDDAW  386 (386)
T ss_pred             ccccccCcccCcccccCccccCCCCcccccccCCCCcc--cccccccccc---ccCCccccCC
Confidence            9999997544 22333554 44456799999  77777  4588888877   4999999999

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 1e-33
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 1e-33
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-29
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 1e-27
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 2e-23
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 7e-19
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 3e-17
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 2e-16
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 2e-16
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 2e-16
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 7e-16
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 9e-15
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-14
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 6e-12
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 1e-11
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 2e-11
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 1e-09
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 3e-09
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 7   LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
           L++++ Q  N +C +C   NPQW SV+YG+++CLECSG+HRGLGVH+SFVRSVTMD W +
Sbjct: 28  LKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKD 87
Query: 67  IQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPW 120
           I+++KM+AGGN +   FL SQ        +  KYN+ AA+++RD++ A+AEGR W
Sbjct: 88  IELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREW 142
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
3o47_A329 ADP-ribosylation factor GTPase-activating protein 1e-61
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 2e-57
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 5e-57
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 1e-51
2owa_A138 Arfgap-like finger domain containing protein; zinc 5e-51
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 9e-51
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 3e-41
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-39
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 2e-39
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 3e-39
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 6e-39
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 1e-38
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 2e-37
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 2e-28
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
 Score =  203 bits (517), Expect = 1e-61
 Identities = 63/133 (47%), Positives = 91/133 (68%), Gaps = 4/133 (3%)

Query: 1   MAATRR---LRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVR 57
           MA+ R    L++++ Q  N +C +C   NPQW SV+YG+++CLECSG+HRGLGVH+SFVR
Sbjct: 19  MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVR 78

Query: 58  SVTMDSWSEIQIKKMEAGGNERLNTFL-SQYGIPKETDIVTKYNTNAASIYRDRIQAIAE 116
           SVTMD W +I+++KM+AGGN +   FL SQ        +  KYN+ AA+++RD++ A+AE
Sbjct: 79  SVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAE 138

Query: 117 GRPWRDPPVVKET 129
           GR W       + 
Sbjct: 139 GREWSLESSPAQN 151
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.98
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.96
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.96
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.95
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.94
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.94
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 83.78
2vut_I43 AREA, nitrogen regulatory protein AREA; transcript 81.42
1gnf_A46 Transcription factor GATA-1; zinc finger, transcri 80.04
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.7e-42  Score=311.54  Aligned_cols=120  Identities=48%  Similarity=0.994  Sum_probs=108.1

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012405            3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT   82 (464)
Q Consensus         3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~   82 (464)
                      ++++|++|++.|+|++||||++++|+|||++||||||++|+||||.||+||||||||+||.|+++||++|+.+||.++|+
T Consensus        25 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~  104 (147)
T 3dwd_A           25 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE  104 (147)
T ss_dssp             HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCC-CCCCCCcccccCChhHHHHHHHHHHHHcCCCCCC
Q 012405           83 FLSQYG-IPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRD  122 (464)
Q Consensus        83 f~ea~~-~~~e~~I~~KY~s~aa~~YrekL~a~~eGr~w~~  122 (464)
                      ||++++ +....+|++||++++|.+||++|++++|||+|+.
T Consensus       105 ~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~  145 (147)
T 3dwd_A          105 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL  145 (147)
T ss_dssp             HHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred             HHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence            999875 4557899999999999999999999999999984
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Back     alignment and structure
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 464
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 3e-35
d1u5ka2157 g.45.1.2 (A:81-237) Recombinational repair protein 0.003
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 3e-35
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 5   RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW 64
             + ++Q   GN +C DC   +P W S + G+  C+ECSG HR LGVH S ++S+T+D  
Sbjct: 4   EIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVL 63

Query: 65  SEIQIKKMEAGGNERLNTFLSQYGIPKETDIVTKYNTNAASIYRDR-IQAIAEGRPW 120
              ++   +  GN   N  +        ++   K N  +  I R   I A    R +
Sbjct: 64  GTSELLLAKNIGNAGFNEIMECCL---PSEDPVKPNPGSDMIARKDYITAKYMERRY 117
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Length = 157 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 88.39
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-36  Score=259.75  Aligned_cols=117  Identities=29%  Similarity=0.530  Sum_probs=102.6

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeEehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 012405            3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT   82 (464)
Q Consensus         3 a~r~L~~L~~~pgNk~CaDCGA~nPqWASv~~GIFICleCSGiHR~LGvHISfVRSvtmD~Ws~~eL~~Mk~GGN~~an~   82 (464)
                      |+++|++|++.|+|++||||++++|+|||++||||||++|||+||.||+|||+||||+||.|+++||++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCCCCcccccCChhHH-HHHHHHHHHHcCCCCCC
Q 012405           83 FLSQYGIPKETDIVTKYNTNAAS-IYRDRIQAIAEGRPWRD  122 (464)
Q Consensus        83 f~ea~~~~~e~~I~~KY~s~aa~-~YrekL~a~~eGr~w~~  122 (464)
                      ||+++....+ +  .|+...... ..+++|+++|+.+.|..
T Consensus        82 ~~ea~~~~~~-~--~kp~~~~~~~~r~~fI~~KY~~k~f~~  119 (122)
T d1dcqa2          82 IMECCLPSED-P--VKPNPGSDMIARKDYITAKYMERRYAR  119 (122)
T ss_dssp             HHTTTCCSSS-C--CSCCTTCCHHHHHHHHHHHHTTCTTSC
T ss_pred             HHHhhCCccc-C--cCCCCCccHHHHHHHHHHHHHhCcccc
Confidence            9997654322 2  234433332 34567999999999974
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure