Query 012406
Match_columns 464
No_of_seqs 297 out of 2142
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1979 DNA mismatch repair pr 100.0 8E-107 2E-111 838.5 27.0 388 18-409 4-395 (694)
2 COG0323 MutL DNA mismatch repa 100.0 5E-82 1.1E-86 688.5 32.6 332 22-359 4-337 (638)
3 PRK00095 mutL DNA mismatch rep 100.0 4.9E-72 1.1E-76 611.0 34.6 328 20-356 1-329 (617)
4 TIGR00585 mutl DNA mismatch re 100.0 8.6E-68 1.9E-72 535.1 30.4 308 20-333 1-312 (312)
5 KOG1978 DNA mismatch repair pr 100.0 9.7E-60 2.1E-64 498.9 23.8 316 22-356 1-321 (672)
6 KOG1977 DNA mismatch repair pr 100.0 2.8E-44 6E-49 377.9 14.1 306 21-354 1-310 (1142)
7 PRK14867 DNA topoisomerase VI 100.0 1.1E-29 2.4E-34 275.2 22.8 246 41-319 36-307 (659)
8 cd03483 MutL_Trans_MLH1 MutL_T 100.0 1.6E-29 3.6E-34 224.3 14.3 127 225-353 1-127 (127)
9 PF01119 DNA_mis_repair: DNA m 100.0 1.8E-28 3.9E-33 215.0 14.0 118 230-353 1-119 (119)
10 cd03482 MutL_Trans_MutL MutL_T 100.0 6.2E-28 1.3E-32 213.0 14.1 121 227-353 2-123 (123)
11 cd03485 MutL_Trans_hPMS_1_like 100.0 1.9E-27 4E-32 212.3 15.2 124 225-352 1-131 (132)
12 cd03486 MutL_Trans_MLH3 MutL_T 99.9 5E-27 1.1E-31 212.0 14.0 122 225-353 1-141 (141)
13 cd00782 MutL_Trans MutL_Trans: 99.9 9.9E-27 2.2E-31 204.1 14.0 120 227-352 2-122 (122)
14 cd03484 MutL_Trans_hPMS_2_like 99.9 1.2E-25 2.7E-30 203.1 14.8 127 225-352 1-141 (142)
15 TIGR01055 parE_Gneg DNA topois 99.9 2.9E-24 6.3E-29 234.8 25.9 180 19-212 6-205 (625)
16 PRK14868 DNA topoisomerase VI 99.9 6E-25 1.3E-29 239.1 13.7 201 41-269 46-271 (795)
17 smart00433 TOP2c Topoisomerase 99.9 6.3E-24 1.4E-28 231.6 21.0 258 43-322 3-298 (594)
18 PRK05644 gyrB DNA gyrase subun 99.9 8E-23 1.7E-27 224.2 26.0 281 18-322 9-336 (638)
19 TIGR01059 gyrB DNA gyrase, B s 99.9 1.3E-22 2.8E-27 223.7 25.1 279 20-322 4-329 (654)
20 PRK05559 DNA topoisomerase IV 99.9 2E-22 4.3E-27 221.0 26.3 278 18-320 9-332 (631)
21 PRK14939 gyrB DNA gyrase subun 99.9 1.4E-21 2.9E-26 216.2 21.8 180 18-212 8-210 (756)
22 TIGR01052 top6b DNA topoisomer 99.9 1.4E-21 3E-26 206.8 16.4 159 40-213 27-206 (488)
23 PRK05218 heat shock protein 90 99.9 2E-20 4.4E-25 204.8 22.4 275 37-352 22-345 (613)
24 PRK04184 DNA topoisomerase VI 99.8 7.7E-19 1.7E-23 187.9 16.9 156 42-213 37-215 (535)
25 cd00329 TopoII_MutL_Trans MutL 99.7 1.1E-17 2.4E-22 141.4 10.3 101 227-333 2-107 (107)
26 COG1389 DNA topoisomerase VI, 99.7 4.5E-16 9.7E-21 160.2 13.6 164 39-212 34-214 (538)
27 PF13589 HATPase_c_3: Histidin 99.6 2.9E-16 6.3E-21 140.8 3.3 101 41-145 2-106 (137)
28 TIGR01058 parE_Gpos DNA topois 99.6 2.4E-13 5.3E-18 149.4 22.2 246 18-287 6-275 (637)
29 PRK14083 HSP90 family protein; 99.5 2.8E-13 6E-18 147.9 18.0 282 35-352 17-325 (601)
30 COG0187 GyrB Type IIA topoisom 99.5 2.9E-13 6.3E-18 145.0 17.5 278 18-319 7-331 (635)
31 COG0326 HtpG Molecular chapero 99.3 2.5E-11 5.4E-16 130.9 17.4 277 40-352 26-353 (623)
32 PTZ00272 heat shock protein 83 99.3 2.7E-11 5.9E-16 134.1 17.3 160 22-200 11-198 (701)
33 PTZ00130 heat shock protein 90 99.3 2.8E-11 6.1E-16 134.6 17.2 152 35-200 82-263 (814)
34 PHA02569 39 DNA topoisomerase 99.3 2.3E-10 5.1E-15 125.3 19.4 175 21-211 3-223 (602)
35 PTZ00109 DNA gyrase subunit b; 99.2 1.1E-11 2.4E-16 138.3 8.0 184 18-211 101-357 (903)
36 PLN03237 DNA topoisomerase 2; 99.2 2.9E-09 6.3E-14 124.2 22.2 269 21-318 31-368 (1465)
37 PLN03128 DNA topoisomerase 2; 99.1 4.2E-09 9.1E-14 121.9 21.7 273 22-322 7-346 (1135)
38 PTZ00108 DNA topoisomerase 2-l 99.1 5.9E-10 1.3E-14 130.2 14.0 179 20-210 8-240 (1388)
39 PF02518 HATPase_c: Histidine 98.7 9.9E-08 2.1E-12 81.3 8.4 78 41-125 5-85 (111)
40 KOG0019 Molecular chaperone (H 98.6 4.6E-07 1E-11 97.0 14.8 240 21-288 42-322 (656)
41 KOG0020 Endoplasmic reticulum 98.4 6.6E-07 1.4E-11 93.6 9.3 144 43-199 97-272 (785)
42 TIGR02938 nifL_nitrog nitrogen 98.3 1.1E-06 2.3E-11 91.9 8.0 74 42-124 388-468 (494)
43 PRK15053 dpiB sensor histidine 98.3 2.2E-06 4.8E-11 92.3 8.5 76 41-125 432-514 (545)
44 COG3290 CitA Signal transducti 98.2 2E-06 4.2E-11 91.9 7.3 80 34-124 420-505 (537)
45 PRK11006 phoR phosphate regulo 98.2 4.7E-06 1E-10 87.5 8.3 79 41-125 317-398 (430)
46 PRK10364 sensor protein ZraS; 98.2 5.3E-06 1.1E-10 87.7 8.6 73 41-125 348-423 (457)
47 PRK10604 sensor protein RstB; 98.2 5.6E-06 1.2E-10 87.4 8.6 78 42-125 320-398 (433)
48 COG4191 Signal transduction hi 98.1 2.5E-06 5.5E-11 91.7 5.4 60 40-99 496-560 (603)
49 PRK09303 adaptive-response sen 98.1 8E-06 1.7E-10 84.9 7.9 75 42-124 273-351 (380)
50 PRK10549 signal transduction h 98.1 1.2E-05 2.6E-10 84.5 8.7 78 42-125 353-433 (466)
51 TIGR01386 cztS_silS_copS heavy 98.0 3.1E-05 6.8E-10 80.7 10.5 78 42-125 354-434 (457)
52 PRK09470 cpxA two-component se 98.0 2.2E-05 4.8E-10 82.1 8.7 76 42-123 354-430 (461)
53 PRK11100 sensory histidine kin 98.0 2.5E-05 5.4E-10 81.7 8.9 77 42-125 369-448 (475)
54 PRK10815 sensor protein PhoQ; 97.9 2.6E-05 5.7E-10 83.9 8.6 74 42-125 379-453 (485)
55 PRK11086 sensory histidine kin 97.9 5.2E-05 1.1E-09 81.1 10.5 72 41-124 433-509 (542)
56 cd00075 HATPase_c Histidine ki 97.9 6.5E-05 1.4E-09 60.4 8.4 75 43-125 2-80 (103)
57 TIGR02916 PEP_his_kin putative 97.9 3E-05 6.6E-10 86.7 8.1 71 42-124 580-654 (679)
58 PRK09467 envZ osmolarity senso 97.9 4.1E-05 8.9E-10 79.9 8.5 76 42-125 332-408 (435)
59 PRK15347 two component system 97.9 3.8E-05 8.2E-10 88.0 8.9 73 42-124 514-588 (921)
60 PRK10755 sensor protein BasS/P 97.8 7.7E-05 1.7E-09 76.0 9.9 74 42-125 248-324 (356)
61 PRK11091 aerobic respiration c 97.8 6.4E-05 1.4E-09 85.0 8.6 88 41-133 398-493 (779)
62 PRK13837 two-component VirA-li 97.7 0.00026 5.6E-09 81.1 12.9 90 42-144 561-673 (828)
63 PRK10337 sensor protein QseC; 97.7 7.1E-05 1.5E-09 78.5 7.7 72 42-125 353-426 (449)
64 COG0642 BaeS Signal transducti 97.7 7E-05 1.5E-09 72.7 6.2 60 41-100 228-289 (336)
65 smart00387 HATPase_c Histidine 97.7 0.00029 6.2E-09 57.5 9.0 78 41-125 5-85 (111)
66 TIGR02966 phoR_proteo phosphat 97.7 0.00013 2.8E-09 72.1 8.0 77 42-124 230-309 (333)
67 PRK11360 sensory histidine kin 97.6 9.2E-05 2E-09 79.2 7.1 71 42-124 501-575 (607)
68 PRK10618 phosphotransfer inter 97.6 0.00016 3.5E-09 83.4 8.8 59 41-99 565-628 (894)
69 PRK10490 sensor protein KdpD; 97.6 0.00018 3.9E-09 83.1 8.7 75 42-124 779-856 (895)
70 PRK11073 glnL nitrogen regulat 97.6 0.00025 5.4E-09 71.7 8.5 71 42-124 238-322 (348)
71 PRK13557 histidine kinase; Pro 97.5 0.00016 3.5E-09 76.9 7.3 72 42-123 278-367 (540)
72 PRK11466 hybrid sensory histid 97.5 0.00025 5.5E-09 81.4 8.6 82 42-133 562-650 (914)
73 TIGR03785 marine_sort_HK prote 97.5 0.00046 1E-08 77.8 10.3 78 42-125 598-678 (703)
74 TIGR02956 TMAO_torS TMAO reduc 97.5 0.00026 5.7E-09 81.6 8.5 75 42-124 580-657 (968)
75 TIGR01925 spIIAB anti-sigma F 97.5 0.00051 1.1E-08 60.7 8.3 58 39-98 37-100 (137)
76 PRK11107 hybrid sensory histid 97.5 0.00033 7.2E-09 80.1 8.7 86 42-133 409-506 (919)
77 PRK09835 sensor kinase CusS; P 97.4 0.0011 2.5E-08 69.8 10.9 57 42-98 376-435 (482)
78 PRK10841 hybrid sensory kinase 97.3 0.00054 1.2E-08 79.5 8.8 85 42-132 563-654 (924)
79 PRK09959 hybrid sensory histid 97.3 0.00048 1E-08 81.6 8.3 76 41-124 828-910 (1197)
80 COG5002 VicK Signal transducti 97.1 0.00098 2.1E-08 68.2 6.7 74 42-121 343-419 (459)
81 PRK11644 sensory histidine kin 97.1 0.0013 2.9E-08 71.1 8.2 45 42-86 411-457 (495)
82 PRK10547 chemotaxis protein Ch 97.0 0.0031 6.7E-08 70.6 10.3 45 44-88 388-447 (670)
83 PRK04069 serine-protein kinase 97.0 0.0022 4.7E-08 59.1 7.3 83 40-130 41-130 (161)
84 PRK03660 anti-sigma F factor; 96.9 0.0081 1.8E-07 53.5 9.7 58 39-98 37-100 (146)
85 TIGR01924 rsbW_low_gc serine-p 96.8 0.0036 7.9E-08 57.6 7.5 84 39-130 40-130 (159)
86 PRK10600 nitrate/nitrite senso 96.7 0.0043 9.2E-08 67.9 8.1 44 42-85 470-515 (569)
87 COG2205 KdpD Osmosensitive K+ 96.6 0.0031 6.6E-08 70.8 6.0 56 42-97 776-834 (890)
88 PRK13560 hypothetical protein; 96.6 0.0052 1.1E-07 68.8 8.0 44 42-85 712-762 (807)
89 COG4192 Signal transduction hi 96.6 0.003 6.5E-08 66.7 5.5 60 41-100 564-628 (673)
90 COG0643 CheA Chemotaxis protei 96.5 0.0069 1.5E-07 68.3 8.3 48 41-88 432-494 (716)
91 COG3851 UhpB Signal transducti 96.4 0.013 2.9E-07 60.3 8.7 46 40-85 409-456 (497)
92 COG3852 NtrB Signal transducti 96.4 0.0057 1.2E-07 61.8 5.7 57 42-99 242-316 (363)
93 PF13581 HATPase_c_2: Histidin 96.3 0.018 3.9E-07 49.9 8.0 76 40-129 30-113 (125)
94 COG3850 NarQ Signal transducti 96.1 0.0078 1.7E-07 64.7 5.5 44 42-85 482-527 (574)
95 COG5000 NtrY Signal transducti 96.1 0.0071 1.5E-07 65.9 5.1 58 42-99 601-668 (712)
96 COG2972 Predicted signal trans 95.6 0.023 5.1E-07 60.8 6.8 51 39-89 348-405 (456)
97 COG4585 Signal transduction hi 95.4 0.027 5.8E-07 58.2 5.9 47 40-86 278-326 (365)
98 KOG0355 DNA topoisomerase type 94.9 0.036 7.8E-07 62.3 5.5 164 36-213 48-232 (842)
99 COG4251 Bacteriophytochrome (l 94.8 0.1 2.2E-06 57.4 8.4 96 42-147 637-742 (750)
100 COG3920 Signal transduction hi 94.3 0.076 1.6E-06 51.7 5.6 46 40-85 121-174 (221)
101 COG2172 RsbW Anti-sigma regula 94.0 0.37 7.9E-06 44.0 8.9 85 38-135 37-130 (146)
102 PRK10935 nitrate/nitrite senso 93.5 0.13 2.9E-06 55.6 6.2 44 42-85 472-518 (565)
103 PRK13559 hypothetical protein; 93.1 0.15 3.2E-06 52.0 5.4 45 41-85 267-319 (361)
104 KOG0787 Dehydrogenase kinase [ 91.6 0.43 9.4E-06 49.7 6.5 56 41-96 260-326 (414)
105 COG3275 LytS Putative regulato 89.8 0.37 8E-06 51.6 4.3 44 41-85 456-507 (557)
106 COG4564 Signal transduction hi 83.1 1.5 3.1E-05 45.3 4.2 48 40-87 358-407 (459)
107 PF14501 HATPase_c_5: GHKL dom 54.5 92 0.002 25.7 8.3 67 41-125 5-77 (100)
108 KOG1845 MORC family ATPases [C 36.3 36 0.00078 39.1 3.8 84 44-132 149-245 (775)
109 COG1929 Glycerate kinase [Carb 34.8 30 0.00065 36.2 2.6 80 22-125 96-175 (378)
110 PRK13669 hypothetical protein; 34.3 48 0.0011 27.2 3.2 43 256-300 29-71 (78)
111 PF07293 DUF1450: Protein of u 26.2 86 0.0019 25.7 3.4 43 256-300 29-71 (78)
112 COG5381 Uncharacterized protei 23.1 1.3E+02 0.0029 27.8 4.3 31 38-68 60-91 (184)
113 COG2865 Predicted transcriptio 22.7 1E+02 0.0022 33.5 4.2 47 39-88 268-322 (467)
114 KOG3938 RGS-GAIP interacting p 21.9 75 0.0016 32.1 2.7 25 58-83 127-151 (334)
115 TIGR03737 PRTRC_B PRTRC system 21.6 1.5E+02 0.0032 29.2 4.7 58 278-337 35-93 (228)
116 KOG0419 Ubiquitin-protein liga 21.4 33 0.00072 30.9 0.1 28 408-437 92-119 (152)
117 PF07492 Trehalase_Ca-bi: Neut 20.7 72 0.0016 21.4 1.6 13 68-80 11-23 (30)
118 PF04025 DUF370: Domain of unk 20.7 95 0.0021 25.1 2.6 37 41-80 20-58 (73)
No 1
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=100.00 E-value=7.8e-107 Score=838.51 Aligned_cols=388 Identities=54% Similarity=0.818 Sum_probs=366.2
Q ss_pred CCccccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccC
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TS 97 (464)
.++.||+||++|+|||+|||||.+|.+||||||||||||+||.|.|.+++||++++||+|||.||.++||+++|+||+||
T Consensus 4 ~~~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 4 VPRKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred cchhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEEcCceecccccccCCCceEEEEEeeeccchhhh
Q 012406 98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (464)
Q Consensus 98 K~~~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRr 177 (464)
|+++||||.+++||||||||||||+|||+|+|+||++++.|||++.|.||++...|+||++++||+|+|+|||||+|+||
T Consensus 84 KL~kFEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rr 163 (694)
T KOG1979|consen 84 KLTKFEDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRR 163 (694)
T ss_pred hcchhHHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEcCCCCCHHHHHHHHhChhhhcccE-Eee-eeccCCCCC
Q 012406 178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLV-QLE-ASEYNDSSS 255 (464)
Q Consensus 178 k~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~-~i~-~~~~~~~~~ 255 (464)
++|++.++|+.+|.++|.+||+|+|+|+|+|++.|+....+++.+..+..|+|+.+||.+++++|+ ++. .++ ..
T Consensus 164 kal~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~--~~-- 239 (694)
T KOG1979|consen 164 KALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDS--KL-- 239 (694)
T ss_pred HHhcCcHHHHHHHHHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccC--ce--
Confidence 999999999999999999999999999999999999999999999999999999999999999998 665 333 33
Q ss_pred ceeEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecC
Q 012406 256 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLL 335 (464)
Q Consensus 256 ~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~ 335 (464)
..|+++|||++++|..||...++|||||+|+|..|+++|+.+|+.|||++.+||+||+|.++|++|||||||||+||+|+
T Consensus 240 l~f~~~g~Isn~n~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL 319 (694)
T KOG1979|consen 240 LKFSAEGYISNANYSAKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFL 319 (694)
T ss_pred eEEeccceEechhhhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEee
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCCccccccccCCCCCCCCCCCCC--CCCCCCCCCCCCCCCceeeccCccccccC
Q 012406 336 NQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDL--HLNPSGSKLQKVPVNKMKCFSNVFENLLG 409 (464)
Q Consensus 336 ~e~~Ii~~I~~~l~~~L~~~~~sr~f~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vr~d~~~~~~~~ 409 (464)
++++|++.||+.|+..|.+.|++|+|..|.++|+........+.. ..++.+.++.|+|+|+|||||+++|+|+.
T Consensus 320 ~qEeIie~I~~~ie~~L~~~d~er~~~~q~~iP~~~~~~~er~~~~~~~~~s~~ks~k~~~~~mVRtDsse~ki~~ 395 (694)
T KOG1979|consen 320 NQEEIIERICQQIEERLSALDTERTFLKQVMIPGPSTLKSERNKPSLKQSPSAQKSDKRYENKMVRTDSSERKIDS 395 (694)
T ss_pred cHHHHHHHHHHHHHHHHhccCcccchhhhhcccCCccccccccCccccccccccccchhcccceeeccccccchhh
Confidence 999999999999999999999999999999999876554322211 11455566678999999999999999987
No 2
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=5e-82 Score=688.51 Aligned_cols=332 Identities=41% Similarity=0.603 Sum_probs=311.8
Q ss_pred ccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCcc
Q 012406 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSK 101 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~ 101 (464)
||.||++++|||+|||||.+|++|||||||||||||||.|+|.++.||+.+|+|.|||+||+++|++.+|.||+|||+.+
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~ 83 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIAS 83 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEEcCceecccccccCCCceEEEEEeeeccchhhhhccc
Q 012406 102 YEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQ 181 (464)
Q Consensus 102 ~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRrk~lk 181 (464)
++||..+.|||||||||+||++||+|+|+||+++...||++.+.+|.+....+|++.+.||+|.|+|||||+|+|+|++|
T Consensus 84 ~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~dLF~NtPaRrKflk 163 (638)
T COG0323 84 LEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRKFLK 163 (638)
T ss_pred hhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccCCCCCCCCEEEehHhhccChHHHHhhc
Confidence 99999999999999999999999999999999988899999999887754567888889999999999999999999999
Q ss_pred CCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeE-EEEcCCCCCHHHHHHHHhChhhhcccEEeeeeccCCCCCceeEE
Q 012406 182 NSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARA-DVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKM 260 (464)
Q Consensus 182 ~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~-~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~i 260 (464)
+.+.|+.+|.++|++|||+||+|+|+|..+|+... .+.++..+...++++.+||..+++++++++... .++++
T Consensus 164 s~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~~------~~~~l 237 (638)
T COG0323 164 SEKTEFGHITELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENEH------EDLRL 237 (638)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccCC------CceEE
Confidence 99999999999999999999999999999997443 345566677778999999999999999987665 56999
Q ss_pred EEEEeCCCCC-CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhH
Q 012406 261 DGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEL 339 (464)
Q Consensus 261 ~G~is~~~~~-~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~ 339 (464)
.||++.|.+. .++..||+|||||+|.++.|.+||.++|+.+||.++||++||+|+|+|..|||||||+|+||+|++++.
T Consensus 238 ~G~v~~P~~~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~EVrf~~~~~ 317 (638)
T COG0323 238 SGYVSLPEFTRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVRFSDERL 317 (638)
T ss_pred EEEecccccccCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcceEEecCHHH
Confidence 9999999643 456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCC
Q 012406 340 IVEKIQSAVELKLRQSNDSR 359 (464)
Q Consensus 340 Ii~~I~~~l~~~L~~~~~sr 359 (464)
|.+.|+++|.++|.......
T Consensus 318 i~~~I~~~I~~~L~~~~~~~ 337 (638)
T COG0323 318 VHDLIYEAIKEALAQQGLIP 337 (638)
T ss_pred HHHHHHHHHHHHHHhcccCC
Confidence 99999999999999876654
No 3
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=4.9e-72 Score=611.04 Aligned_cols=328 Identities=38% Similarity=0.601 Sum_probs=306.7
Q ss_pred ccccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCC
Q 012406 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (464)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~ 99 (464)
++|++||++++++|+||++|.+|+++|+||||||+|||||.|.|.+..+|...|+|.|||+||+++|++.+|.+|+|||+
T Consensus 1 ~~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi 80 (617)
T PRK00095 1 MPIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKI 80 (617)
T ss_pred CCceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCC
Confidence 36999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred ccccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEEcCceecccccccCCCceEEEEEeeeccchhhhhc
Q 012406 100 SKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKT 179 (464)
Q Consensus 100 ~~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRrk~ 179 (464)
.+++|+.++.|+|||||||+||+++|+|+|+||+.++..||++.|.+|++. ...+++..+||+|+|+|||||+|+|+++
T Consensus 81 ~~~~dl~~~~t~GfrGeAL~sI~~vs~l~i~s~~~~~~~~~~~~~~~G~~~-~~~~~~~~~GT~V~v~~LF~n~P~Rrkf 159 (617)
T PRK00095 81 ASLDDLEAIRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEGGEIV-EVKPAAHPVGTTIEVRDLFFNTPARRKF 159 (617)
T ss_pred CChhHhhccccCCcchhHHHhhhhceEEEEEEecCCCCceEEEEecCCcCc-ceecccCCCCCEEEechhhccCcHHHHh
Confidence 999999999999999999999999999999999998888999999999764 2455667899999999999999999999
Q ss_pred ccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEcCCCCCHHHHHHHHhChhhhcccEEeeeeccCCCCCceeE
Q 012406 180 LQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFK 259 (464)
Q Consensus 180 lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~ 259 (464)
+++.+.++.+|.+++++||++||+|+|++.++++ ..+++.+..++.+++..+||..+..+++.++.+. .+++
T Consensus 160 lk~~~~e~~~i~~~v~~~Al~~p~i~f~l~~~~~--~~~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~~------~~~~ 231 (617)
T PRK00095 160 LKSEKTELGHIDDVVNRLALAHPDVAFTLTHNGK--LVLQTRGAGQLLQRLAAILGREFAENALPIDAEH------GDLR 231 (617)
T ss_pred ccCcHHHHHHHHHHHHHHhhcCCCcEEEEEECCE--EEEEeCCCCCHHHHHHHHhCHHhHhheEEEeccC------CCEE
Confidence 9988899999999999999999999999999874 4577778899999999999999999999988765 5699
Q ss_pred EEEEEeCCCCC-CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChh
Q 012406 260 MDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQE 338 (464)
Q Consensus 260 i~G~is~~~~~-~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~ 338 (464)
++||++.+.+. .++..|++|||||+|.++.|.++|+++|+.++|+++||+++|+|+|||+.|||||||+|++|+|.+|+
T Consensus 232 i~g~is~p~~~~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~e~ 311 (617)
T PRK00095 232 LSGYVGLPTLSRANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDER 311 (617)
T ss_pred EEEEEeCcccccCCCcceEEEECCcEecCHHHHHHHHHHHHHhccCCCCcEEEEEEEeChHhcccccCCCcCEEEeCCHH
Confidence 99999998654 34677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 012406 339 LIVEKIQSAVELKLRQSN 356 (464)
Q Consensus 339 ~Ii~~I~~~l~~~L~~~~ 356 (464)
.|.+.|++.|.++|...+
T Consensus 312 ~i~~~i~~~i~~~l~~~~ 329 (617)
T PRK00095 312 LVHDLIVQAIQEALAQSG 329 (617)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999997654
No 4
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.6e-68 Score=535.12 Aligned_cols=308 Identities=44% Similarity=0.681 Sum_probs=280.3
Q ss_pred ccccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCC
Q 012406 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (464)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~ 99 (464)
++|++||++++++|+||++|.+|.+||+|||+||+||+|+.|.|.+..++...|+|.|||.||++++++.+|++|+|||+
T Consensus 1 ~~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~ 80 (312)
T TIGR00585 1 MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKI 80 (312)
T ss_pred CcCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCC
Confidence 37999999999999999999999999999999999999999999999888777999999999999999999999999999
Q ss_pred ccccccccccccCcccchhHhhhhhceEEEEEEE-cCCccEEEEEEEcCceecccccccCCCceEEEEEeeeccchhhhh
Q 012406 100 SKYEDLQSIKSMGFRGEALASMTYVGHVTVTTIT-KGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRK 178 (464)
Q Consensus 100 ~~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt-~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRrk 178 (464)
.+++|+....+||||||||+||+++|+++|+||+ +++.++|++. .+|....+..+++..+||+|+|+|||+|+|+|++
T Consensus 81 ~~~~~~~~~~~~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~ 159 (312)
T TIGR00585 81 QSFEDLERIETLGFRGEALASISSVSRLTITTKTSAADGLAWQAL-LEGGMIEEIKPAPRPVGTTVEVRDLFYNLPVRRK 159 (312)
T ss_pred CChhHhhcccccCccchHHHHHHhhCcEEEEEeecCCCcceEEEE-ECCCcCcccccccCCCccEEEEchhhccCchhhh
Confidence 9999999999999999999999999999999999 7888899887 4555433345667789999999999999999999
Q ss_pred cccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEcCCCCCHHH-HHHHHhChhhhcccEEeeeeccCCCCCce
Q 012406 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLD-SIRTVYGVSVASNLVQLEASEYNDSSSFV 257 (464)
Q Consensus 179 ~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~-~i~~IfG~~va~~L~~i~~~~~~~~~~~~ 257 (464)
++++.+.++.++++++++||++||+|+|.|..+|+....+.+.+..++.+ ++.++||..++++|+++.... . .+
T Consensus 160 ~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~---~--~~ 234 (312)
T TIGR00585 160 FLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDGKKVLQLSTKPNQSLKERRIRSVFGTAVLSKLFPLLEWE---D--GD 234 (312)
T ss_pred hccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECCEEEEEEcCCCCCCHHHHHHHHHhChHhHhhceeeeccc---C--CC
Confidence 88888899999999999999999999999999987666666556788999 699999999999999997322 1 56
Q ss_pred eEEEEEEeCCCCCCCC-ce-EEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEe
Q 012406 258 FKMDGYVSNSNYVAKK-TT-MVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVS 333 (464)
Q Consensus 258 ~~i~G~is~~~~~~kk-~~-~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~ 333 (464)
++++||++.+....++ .. ||+|||||||.++.|.|+|+++|+.++|+++||+++|+|+|||..+||||||+|+||+
T Consensus 235 ~~v~G~is~p~~~~~~~~~~q~ifvNgR~v~~~~l~k~I~~~y~~~~~~~~~P~~vL~i~~p~~~iDvNv~P~K~eV~ 312 (312)
T TIGR00585 235 LQLEGFISEPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEYLPKGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312 (312)
T ss_pred EEEEEEEcCcccccCCCCcceEEEECCcEecchHHHHHHHHHHHHhccCCCCcEEEEEEEEChHHcccCCCCCchhhC
Confidence 9999999999876544 34 8999999999999999999999999999999999999999999999999999999985
No 5
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=100.00 E-value=9.7e-60 Score=498.94 Aligned_cols=316 Identities=32% Similarity=0.451 Sum_probs=285.8
Q ss_pred ccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCcc
Q 012406 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSK 101 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~ 101 (464)
|++|+++++.+|++|++|.++++|||||||||||||||.|+|.+++.|.+.|+|.|||+||+..|++-+|..|+|||+.+
T Consensus 1 Ik~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~ 80 (672)
T KOG1978|consen 1 IKQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVS 80 (672)
T ss_pred CCCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEE-cCceecccccccCCCceEEEEEeeeccchhhhhcc
Q 012406 102 YEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARRKTL 180 (464)
Q Consensus 102 ~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~-~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRrk~l 180 (464)
|.|+....|||||||||+|+|.++.|+|.|++.+...|.++.|+ +|.+. ..++++++.||||+|.+||.|+|||++.|
T Consensus 81 f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~~ar~~GTTV~v~~LF~tLPVR~kef 159 (672)
T KOG1978|consen 81 FADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII-QKKPVARGRGTTVMVRQLFSTLPVRRKEF 159 (672)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCcee-eeccccCCCCCEEEHhhhcccCCCchHHh
Confidence 99999999999999999999999999999999988999999996 57776 45788999999999999999999999877
Q ss_pred -cCCchhhhhHHHHHHHHHhhCCCeEEEEEEC---CeeeEEEEcCCCCCHHHHHHHHhChhhhcccEEeeeeccCCCCCc
Q 012406 181 -QNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH---GAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSF 256 (464)
Q Consensus 181 -k~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~---g~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~ 256 (464)
++.++++.+++.+++.||+++++|+|.|.+. ++....+.+.+..+..+.++.+||...++.|.++..-+ .
T Consensus 160 ~r~~Kref~k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~~is------~ 233 (672)
T KOG1978|consen 160 QRNIKRKFVKLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINISSNFGSVEEENLEPLIFIS------S 233 (672)
T ss_pred hcchhhhhhhHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHHHhhhhhhhhhccccccccc------c
Confidence 6788999999999999999999999999875 45678899999999999999999999998888876111 0
Q ss_pred eeEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCC
Q 012406 257 VFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLN 336 (464)
Q Consensus 257 ~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~ 336 (464)
.. .| ........||+|||+|||+.+.+.+.++.+|..|..+ .| |+|.+|++.+||||.|+|+.|.|++
T Consensus 234 ~~--~g-----~~r~s~drqf~fIn~Rpv~~~~i~~~inevy~~~~~~-q~----l~i~V~~~~iDvNvtPDK~~vll~~ 301 (672)
T KOG1978|consen 234 CH--HG-----CGRSSEDRQFIFINRRPVFPSDICRVINEVYKLYNER-QY----LFLDVPEGCIDVNVTPDKRQVLLSN 301 (672)
T ss_pred cc--cc-----ccccCccceeeeecCccCCHHHHHHHHHHHhhhhccc-cc----eeeeccccceeeeeCCCcceeeccc
Confidence 01 11 1122345689999999999999999999999988543 33 9999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCC
Q 012406 337 QELIVEKIQSAVELKLRQSN 356 (464)
Q Consensus 337 e~~Ii~~I~~~l~~~L~~~~ 356 (464)
|..++..+++.+..++....
T Consensus 302 e~~vl~~l~~~l~~~~~s~~ 321 (672)
T KOG1978|consen 302 ERSVLFSLRNSLVDFYNSNC 321 (672)
T ss_pred hHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999998433
No 6
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-44 Score=377.93 Aligned_cols=306 Identities=28% Similarity=0.371 Sum_probs=254.4
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCc
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~ 100 (464)
+||.||.+|..++++|.++.+++++|.||+-|||||+||.|.|.|....+ .++|.|||.||..+||.++++||+|||..
T Consensus 1 ~Ik~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~t~-sv~ViDdG~G~~rdDl~~lg~ry~TSK~h 79 (1142)
T KOG1977|consen 1 MIKCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNMETF-SVQVIDDGFGMGRDDLEKLGNRYFTSKCH 79 (1142)
T ss_pred CccccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCcee-EEEEEecCCCccHHHHHHHHhhhhhhhce
Confidence 59999999999999999999999999999999999999999999987766 59999999999999999999999999999
Q ss_pred cccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEE-EEEcCce-ec-ccccccCCCceEEEEEeeeccchhhh
Q 012406 101 KYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRV-SYRDGVM-ES-EPKACAAVKGTQIMVENLFYNMIARR 177 (464)
Q Consensus 101 ~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~-~~~~G~~-~~-~~~~~~~~~GTtV~V~~LF~n~PvRr 177 (464)
...|+....||||||||||||+.+|.+.|.|+..+...+|++ .+..|.- .. +.--.+...||||+|+||||++||||
T Consensus 80 ~~ndl~~~~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lPVRR 159 (1142)
T KOG1977|consen 80 SVNDLENPRTYGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLPVRR 159 (1142)
T ss_pred eccccccccccccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcchhhh
Confidence 999999999999999999999999999999999998888752 2333432 11 11123446899999999999999999
Q ss_pred hccc-CCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEcCCCCCHHHHHHHHhChhhhcccEEeeeeccCCCCCc
Q 012406 178 KTLQ-NSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSF 256 (464)
Q Consensus 178 k~lk-~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~ 256 (464)
++.. ++.+++.+|+..+.++++.||.|+|++.+..+....|++.++.+..+.+ +.+ .
T Consensus 160 r~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eil----------------fr~------k 217 (1142)
T KOG1977|consen 160 RLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREIL----------------FRY------K 217 (1142)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhh----------------hhh------c
Confidence 9653 5678999999999999999999999999876656677777644332222 222 2
Q ss_pred eeEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCC
Q 012406 257 VFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLN 336 (464)
Q Consensus 257 ~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~ 336 (464)
+|++. +...+..++..++|||||+|-....++.+.++.+.-. -...|-++|++.||...|||-.+|+|.-|.|.+
T Consensus 218 ~~e~~----~s~~~~N~t~g~l~v~~~~~~~~~kh~~~~q~lR~~~-~~~~P~yvi~v~cp~~ly~vs~epakt~ieF~~ 292 (1142)
T KOG1977|consen 218 EFELS----SSEAHYNKTMGFLFVNKRLVLRTKKHKLIDQLLRKES-IICKPKYVINVQCPFCLYDVSMEPAKTLIEFQN 292 (1142)
T ss_pred ccccc----cchhccccccceeeecchhhhccchhhHHHHHHHhhh-eeccCcceeecccchhhhhhhcCcccchhhhhc
Confidence 23322 1122223667899999999999999999998876421 124677899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhc
Q 012406 337 QELIVEKIQSAVELKLRQ 354 (464)
Q Consensus 337 e~~Ii~~I~~~l~~~L~~ 354 (464)
|+.++-+|++....+|.+
T Consensus 293 w~~~l~~I~~~~~~~~kk 310 (1142)
T KOG1977|consen 293 WDTLLFCIQEGVKMFLKK 310 (1142)
T ss_pred chhhHhHHHHhhhhhhhc
Confidence 999999999999888764
No 7
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.97 E-value=1.1e-29 Score=275.18 Aligned_cols=246 Identities=20% Similarity=0.247 Sum_probs=195.4
Q ss_pred CHHHHHHHHHHcchhcCCC-----eEEEEEeeCC--eeEEEEEeCCCCCCcccHHHhHhh-cccCCCccccccccccccC
Q 012406 41 RPVSAVKELVENSLDADAT-----SINVVVKDGG--LKLIQVSDDGHGIRYEDLPILCER-HTTSKLSKYEDLQSIKSMG 112 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At-----~I~I~i~~~g--~~~I~V~DNG~GI~~edl~~l~~r-~~TSK~~~~~dl~~~~t~G 112 (464)
.+.++++|||+||+||+++ .|.|.+..++ ...|.|.|||+||++++++.+|.+ |+|||+..+ +.+.|
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~-----~qS~G 110 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL-----IQSRG 110 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce-----eccCC
Confidence 4568999999999999986 7999887543 345999999999999999999999 888998653 47899
Q ss_pred cccchhHhhhhhceE------EEEEEEcCCc---cEEEEEE--EcCceecccccccCCCceEEE--EEeeeccchhhhhc
Q 012406 113 FRGEALASMTYVGHV------TVTTITKGHL---HGYRVSY--RDGVMESEPKACAAVKGTQIM--VENLFYNMIARRKT 179 (464)
Q Consensus 113 fRGeALaSis~vs~l------~I~Srt~~~~---~~~~~~~--~~G~~~~~~~~~~~~~GTtV~--V~~LF~n~PvRrk~ 179 (464)
++|+||+++..++++ .|.|+..+.. .++.+.+ .+|++....++...++||+|+ |+||||| |+
T Consensus 111 ~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLFyn---R~-- 185 (659)
T PRK14867 111 QQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVTYN---RR-- 185 (659)
T ss_pred CCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEEEeeceec---hh--
Confidence 999999988766654 7999886553 2344545 457764432455678999999 9999999 33
Q ss_pred ccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCee----eEEEEcCCCCCHHHHHHHHhChhhhcccEEeeeeccCCCCC
Q 012406 180 LQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA----RADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSS 255 (464)
Q Consensus 180 lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~----~~~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~ 255 (464)
+.. +.++|+++|+.||+++|.+.+++.. +....+++ .+.+++.++||.. +.+|+.+....
T Consensus 186 ------E~~-i~e~l~r~ALanP~i~f~l~~~~~~~~~~r~~~~lp~--~~~e~~ph~~G~~-~~~Li~i~~~~------ 249 (659)
T PRK14867 186 ------EQG-PFEYLRRISLSTPHAKITLKDPEETVVFDRTVDEIPE--KPEEMKPHPYGLT-TDELLYIARKT------ 249 (659)
T ss_pred ------hHH-HHHHHHHHHHhCCCcEEEEEeCCccccCCcceeecCc--CHHHHhhccCccc-hhhceehhccC------
Confidence 334 8999999999999999999998431 22334443 7789999999999 88899987555
Q ss_pred ceeEEEEEEeCCCCC-CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCC
Q 012406 256 FVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPE 319 (464)
Q Consensus 256 ~~~~i~G~is~~~~~-~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~ 319 (464)
..++++||+ .+... ..+..++ +|.++.|.++|.+.|+.++|++.+|+++|+|++||-
T Consensus 250 ~~~~v~gfl-~p~~sR~~~~~~~------~V~~~~l~~ai~~ay~~~l~~~~~P~~~L~l~i~~~ 307 (659)
T PRK14867 250 DSSKVSSML-NSELSRVTTKRIK------ELEEYVLRDLLLENYRDSVFWDTVVSCYLNFDFTKY 307 (659)
T ss_pred CceEEEEEe-cchhccCCCCcEE------EEccHHHHHHHHHHHhhcccCCCcceEEEEEEeCcc
Confidence 458999998 55543 3344444 777888999999999999999999999999999984
No 8
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.96 E-value=1.6e-29 Score=224.26 Aligned_cols=127 Identities=54% Similarity=0.925 Sum_probs=115.6
Q ss_pred CHHHHHHHHhChhhhcccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCC
Q 012406 225 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPK 304 (464)
Q Consensus 225 s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk 304 (464)
++.++|..+||...+++|++++... +....+++++||++.|....++..|++|||||||.++.|.++|+++|+.++|+
T Consensus 1 ~~~~~i~~v~G~~~~~~li~i~~~~--~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~ 78 (127)
T cd03483 1 STKDNIRSVYGAAVANELIEVEISD--DDDDLGFKVKGLISNANYSKKKIIFILFINNRLVECSALRRAIENVYANYLPK 78 (127)
T ss_pred CHHHHHHHHhCHHHHhcceEEeccc--CCcCCcEEEEEEEcCchhcCCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcC
Confidence 4679999999999999999998654 10013599999999998777778899999999999999999999999999999
Q ss_pred CCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 012406 305 ASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (464)
Q Consensus 305 ~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L~ 353 (464)
+++|+++|+|++||+.|||||||+|+||+|.+|+.|++.|+++|++.|+
T Consensus 79 ~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~~L~ 127 (127)
T cd03483 79 GAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKLS 127 (127)
T ss_pred CCccEEEEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998874
No 9
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=99.96 E-value=1.8e-28 Score=215.04 Aligned_cols=118 Identities=34% Similarity=0.627 Sum_probs=103.9
Q ss_pred HHHHhChhhhcccEEeeeeccCCCCCceeEEEEEEeCCCCCC-CCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCc
Q 012406 230 IRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVA-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKP 308 (464)
Q Consensus 230 i~~IfG~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~-kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~P 308 (464)
|+++||..++++|++++.+. .+++++||++.+.... ++..||+|||||||+++.|.++|+++|+.+++++.+|
T Consensus 1 I~~i~G~~~~~~l~~i~~~~------~~~~i~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P 74 (119)
T PF01119_consen 1 IAQIFGKEFASNLIEIDSED------EDFSIEGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYP 74 (119)
T ss_dssp HHHHHHHHHHCCEEEEEEEE------CCEEEEEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-
T ss_pred CeEeECHHHHhccEEEeccC------CCEEEEEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCc
Confidence 67999999999999999776 4599999999997653 4578999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 012406 309 FIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (464)
Q Consensus 309 f~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L~ 353 (464)
+++|+|+|||+.|||||||+|+||+|.+|++|+++|+++|.++|+
T Consensus 75 ~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 119 (119)
T PF01119_consen 75 IFVLFIEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIREALS 119 (119)
T ss_dssp EEEEEEE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEcchHHccccccccceEEEecCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999884
No 10
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=99.95 E-value=6.2e-28 Score=213.02 Aligned_cols=121 Identities=24% Similarity=0.433 Sum_probs=111.9
Q ss_pred HHHHHHHhChhhhcccEEeeeeccCCCCCceeEEEEEEeCCCCC-CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCC
Q 012406 227 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKA 305 (464)
Q Consensus 227 ~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~-~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~ 305 (464)
.+++..+||...+++|++++.+. .+++++||++.+... ..+..||+|||||||.++.|.++|+++|+.+++++
T Consensus 2 ~~ri~~v~G~~~~~~li~i~~~~------~~~~i~G~is~p~~~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~ 75 (123)
T cd03482 2 LQRLADILGEDFAEQALAIDEEA------GGLRLSGWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGG 75 (123)
T ss_pred HhHHHHHhCHHHHhccceEeccC------CCEEEEEEEeCchhccCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCC
Confidence 57999999999999999998554 559999999998753 34677999999999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 012406 306 SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (464)
Q Consensus 306 ~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L~ 353 (464)
+||+++|+|+|||+.|||||||+|+||+|.+|+.|.+.|+++|+++|+
T Consensus 76 ~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 123 (123)
T cd03482 76 RHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA 123 (123)
T ss_pred CCcEEEEEEEcChHheeeccCCCccEEEECCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998874
No 11
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.95 E-value=1.9e-27 Score=212.35 Aligned_cols=124 Identities=23% Similarity=0.471 Sum_probs=112.2
Q ss_pred CHHHHHHHHhChhhhcccEEeeeeccCCCCCceeEEEEEEeCCC--CC-CCCceEEEEEcCcccCC-hHHHHHHHHHHHh
Q 012406 225 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSN--YV-AKKTTMVLFVNDRLVEC-APLKRAVEIVYAA 300 (464)
Q Consensus 225 s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~--~~-~kk~~~~lFIN~R~V~~-~~L~kaI~~vy~~ 300 (464)
++.+++.++||...+++|++++.+. +. .+++++||++.+. .. .++..||+|||||||.+ +.|.++|+++|+.
T Consensus 1 ~l~~~i~~v~G~~~~~~li~i~~~~--~~--~~~~i~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~ 76 (132)
T cd03485 1 DHKEALARVLGTAVAANMVPVQSTD--ED--PQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSS 76 (132)
T ss_pred CHHHHHHHHhCHHHHhccEEEeccC--CC--CcEEEEEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHH
Confidence 4679999999999999999998765 22 3599999999983 23 35677999999999999 9999999999999
Q ss_pred cC---CCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 012406 301 TF---PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (464)
Q Consensus 301 ~l---pk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L 352 (464)
++ |.++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|++++++.+
T Consensus 77 ~~~~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v~~~~ 131 (132)
T cd03485 77 AYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLY 131 (132)
T ss_pred HhccccccCCCEEEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHHHHHc
Confidence 99 99999999999999999999999999999999999999999999998875
No 12
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.95 E-value=5e-27 Score=211.95 Aligned_cols=122 Identities=20% Similarity=0.376 Sum_probs=112.4
Q ss_pred CHHHHHHHHhChhhhcccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHh----
Q 012406 225 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAA---- 300 (464)
Q Consensus 225 s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~---- 300 (464)
++.+++.++||..++++|++++.+. .+++++||++.+. ...+..||+|||||||.++.|.++|+++|+.
T Consensus 1 ~~~~~i~~i~G~~~~~~l~~v~~~~------~~~~v~G~is~p~-~~sk~~q~ifVN~R~v~~~~l~~aI~~~y~~~~~~ 73 (141)
T cd03486 1 SILSVFKQIYGLVLAQKLKEVSAKF------QEYEVSGYISSEG-HYSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSAV 73 (141)
T ss_pred CHHHHHHHHhChhhhccEEEeeccc------CcEEEEEEEcCCC-CCCCceEEEEECCEEechHHHHHHHHHHHhhcccc
Confidence 4678999999999999999998766 5699999999998 4457789999999999999999999999999
Q ss_pred ----cC-----------CCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 012406 301 ----TF-----------PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (464)
Q Consensus 301 ----~l-----------pk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L~ 353 (464)
.+ |+++||+++|+|+|||+.|||||||+|+||+|.+|+.|.++|+++|.++|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~~~L~ 141 (141)
T cd03486 74 AKNKSSPQSKSSRRGKRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFLK 141 (141)
T ss_pred ccccccccccccccccCCccCCCEEEEEEecCchHheeeeCCceeEEEecChHHHHHHHHHHHHHHhC
Confidence 44 788999999999999999999999999999999999999999999999874
No 13
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.94 E-value=9.9e-27 Score=204.13 Aligned_cols=120 Identities=40% Similarity=0.643 Sum_probs=111.7
Q ss_pred HHHHHHHhChhhhcccEEeeeeccCCCCCceeEEEEEEeCCCC-CCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCC
Q 012406 227 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNY-VAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKA 305 (464)
Q Consensus 227 ~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~-~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~ 305 (464)
.+++.++||..++++|++++.+. ..++++||++.++. ..++..|++|||||||.++.|.++|+++|+.+++.+
T Consensus 2 ~~~i~~v~G~~~~~~l~~i~~~~------~~~~i~G~is~~~~~~~~~~~q~~fVN~R~v~~~~l~~ai~~~y~~~~~~~ 75 (122)
T cd00782 2 KDRIAQVYGKEVAKNLIEVELES------GDFRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLPKG 75 (122)
T ss_pred HHHHHHHcCHHHHhcceEEeccC------CCEEEEEEEECchhhcCCCccEEEEECCeEecCHHHHHHHHHHHHHhCcCC
Confidence 57999999999999999998766 56999999999974 446678999999999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 012406 306 SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (464)
Q Consensus 306 ~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L 352 (464)
.+|+++|+|+|||+.|||||||+|+||+|.+|+.|++.|++.++++|
T Consensus 76 ~~P~~~L~i~~~~~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~~~l 122 (122)
T cd00782 76 RYPVFVLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122 (122)
T ss_pred CCcEEEEEEEeChhheeeeeCCCCCEEEecCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998765
No 14
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.93 E-value=1.2e-25 Score=203.12 Aligned_cols=127 Identities=24% Similarity=0.417 Sum_probs=110.1
Q ss_pred CHHHHHHHHhChhhhcccEEeeeecc-----------CCCCCceeEEEEEEeCC--CCC-CCCceEEEEEcCcccCChHH
Q 012406 225 SRLDSIRTVYGVSVASNLVQLEASEY-----------NDSSSFVFKMDGYVSNS--NYV-AKKTTMVLFVNDRLVECAPL 290 (464)
Q Consensus 225 s~~~~i~~IfG~~va~~L~~i~~~~~-----------~~~~~~~~~i~G~is~~--~~~-~kk~~~~lFIN~R~V~~~~L 290 (464)
++.++|..+||..++++|++++...+ ......+++++||++++ +.. ..+..|++|||||||.++.|
T Consensus 1 ~~~~~i~~v~G~~~~~~li~v~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~~~~l 80 (142)
T cd03484 1 DIKDNIINVFGGKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDLKKV 80 (142)
T ss_pred CHHHHHHHHhCHHHHhcccceeccccccccccccccccccCCCcEEEEEEECCCcccCCCCCCCcEEEEECCeecCCHHH
Confidence 36799999999999999999875441 00011459999999998 432 34567999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 012406 291 KRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (464)
Q Consensus 291 ~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L 352 (464)
.++|+++|+.++ +++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++|.+++
T Consensus 81 ~~aI~~~y~~~~-~~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~v~~~~ 141 (142)
T cd03484 81 AKLINEVYKSFN-SRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELF 141 (142)
T ss_pred HHHHHHHHHHhc-CcCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHHHHHHHHHHHHHh
Confidence 999999999998 7899999999999999999999999999999999999999999999876
No 15
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.93 E-value=2.9e-24 Score=234.82 Aligned_cols=180 Identities=21% Similarity=0.331 Sum_probs=154.9
Q ss_pred CccccccChhHHHhhcCCcccc--CHHHHHHHHHHcchh---c-CCCeEEEEEeeCCeeEEEEEeCCCCCCccc------
Q 012406 19 PPKIHRLEESVVNRIAAGEVIQ--RPVSAVKELVENSLD---A-DATSINVVVKDGGLKLIQVSDDGHGIRYED------ 86 (464)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vI~--~~~~avkELIeNSlD---A-~At~I~I~i~~~g~~~I~V~DNG~GI~~ed------ 86 (464)
...|+.|..--.-|.+.|.+|. +|.++|+|||+||+| | +|+.|.|.|+.++ .|+|.|||+|||.++
T Consensus 6 ~~~i~~L~gle~VRkRPgMYigs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d~--~I~V~DnGrGIp~~~h~~~g~ 83 (625)
T TIGR01055 6 AKDIEVLDGLEPVRKRPGMYTDTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQDQ--SIEVFDNGRGMPVDIHPKEGV 83 (625)
T ss_pred hhhceeecccHHhhcCCCCeeCCCCcceeehhhhhcccchhhcCCCCEEEEEEeCCC--eEEEEecCCccCcccccccCC
Confidence 3469999999999999999995 689999999999999 9 5999999998775 699999999999998
Q ss_pred --HHHhH-hhcccCCCccccccccccccCcccchhHhhhhhce-EEEEEEEcCCccEEEEEEEcCceecccc---cc-cC
Q 012406 87 --LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPK---AC-AA 158 (464)
Q Consensus 87 --l~~l~-~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs~-l~I~Srt~~~~~~~~~~~~~G~~~~~~~---~~-~~ 158 (464)
++.++ .+|+|||+.+. +.. .+.||||+||++++.+|+ ++|+|+..+.. |++.|.+|....... ++ ..
T Consensus 84 ~~~e~v~t~lhagsK~~~~--~~~-~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~~G~~~~~~~~i~~~~~~ 158 (625)
T TIGR01055 84 SAVEVILTTLHAGGKFSNK--NYH-FSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFENGAKVTDLISAGTCGKR 158 (625)
T ss_pred cHHHHhhhcccccCCCCCC--cce-ecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEECCeEccccccccccCCC
Confidence 77776 99999999753 444 899999999999999997 99999987653 999999997633222 34 34
Q ss_pred CCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECC
Q 012406 159 VKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (464)
Q Consensus 159 ~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g 212 (464)
.+||+|++ +|.| +.|++...++..|.++++++|+.||+++|.|.+..
T Consensus 159 ~~GT~V~F------~PD~-~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~der 205 (625)
T TIGR01055 159 LTGTSVHF------TPDP-EIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDEV 205 (625)
T ss_pred CCCeEEEE------EECH-HHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeecC
Confidence 59999998 6999 77777778889999999999999999999999753
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.92 E-value=6e-25 Score=239.06 Aligned_cols=201 Identities=23% Similarity=0.351 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHcchhcCCC-----eEEEEEeeCCe-eEEEEEeCCCCCCcccHHHhHhhcc-cCCCccccccccccccCc
Q 012406 41 RPVSAVKELVENSLDADAT-----SINVVVKDGGL-KLIQVSDDGHGIRYEDLPILCERHT-TSKLSKYEDLQSIKSMGF 113 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At-----~I~I~i~~~g~-~~I~V~DNG~GI~~edl~~l~~r~~-TSK~~~~~dl~~~~t~Gf 113 (464)
.+..+|+|||+||+||+++ .|.|.+..++. ..|.|.|||+||++++++.+|.+|+ |||+...+ .++|+
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~-----~srG~ 120 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHARE-----QSRGQ 120 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccc-----cCCCC
Confidence 4779999999999999876 68888876553 4799999999999999999999986 88976542 67899
Q ss_pred ccchhHhhhhhce------EEEEEEEcCCccEE--EEEEEcCc----ee-cccccccCCCceEEEEEeeeccchhhhhcc
Q 012406 114 RGEALASMTYVGH------VTVTTITKGHLHGY--RVSYRDGV----ME-SEPKACAAVKGTQIMVENLFYNMIARRKTL 180 (464)
Q Consensus 114 RGeALaSis~vs~------l~I~Srt~~~~~~~--~~~~~~G~----~~-~~~~~~~~~~GTtV~V~~LF~n~PvRrk~l 180 (464)
+|+||+++..++. ++|+|++.++..|| ++.++.|+ +. .+..+...++||+|+|+ ||+|+|.|++
T Consensus 121 rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~-Lf~N~pAR~k-- 197 (795)
T PRK14868 121 QGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELE-MEANMRARQQ-- 197 (795)
T ss_pred CceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEE-EEccCchhhh--
Confidence 9999998877775 69999998876674 77777663 21 22345677899999999 9999999865
Q ss_pred cCCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEc-CCCCCHHHHHHHH----hChhhhcccEEeeeeccCCCCC
Q 012406 181 QNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHS-IATSSRLDSIRTV----YGVSVASNLVQLEASEYNDSSS 255 (464)
Q Consensus 181 k~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t-~~~~s~~~~i~~I----fG~~va~~L~~i~~~~~~~~~~ 255 (464)
|.++|+++||.||+++|.+..++. .+.+ +.+..+.++...+ ||..+ ..|+.+....
T Consensus 198 ---------I~eyl~r~Al~nP~a~f~l~~~~~---~~~~~r~t~~lp~~p~eIkPHP~Gve~-~~L~~m~~~t------ 258 (795)
T PRK14868 198 ---------LHDYIKHTAVVNPHARIELREPDE---SLKFERATDQLPAETEEIRPHPHGVEL-GTLLKMLEAT------ 258 (795)
T ss_pred ---------HHHHHHHHHhhCCCeEEEEEECCE---EEEecccccccccCchhccCCCCCcCH-HHHHHHHhcc------
Confidence 899999999999999999999832 2455 5667888999999 99988 7777776554
Q ss_pred ceeEEEEEEeCCCC
Q 012406 256 FVFKMDGYVSNSNY 269 (464)
Q Consensus 256 ~~~~i~G~is~~~~ 269 (464)
..+++.||+ .+.+
T Consensus 259 ~~~~l~gFL-~~ef 271 (795)
T PRK14868 259 DSYSVSGFL-QEEF 271 (795)
T ss_pred CCcEeHHhh-hhhh
Confidence 458999998 4443
No 17
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.92 E-value=6.3e-24 Score=231.61 Aligned_cols=258 Identities=18% Similarity=0.238 Sum_probs=185.9
Q ss_pred HHHHHHHHHcchhcC----CCeEEEEEeeCCeeEEEEEeCCCCCCcccHH--------Hh-HhhcccCCCcccccccccc
Q 012406 43 VSAVKELVENSLDAD----ATSINVVVKDGGLKLIQVSDDGHGIRYEDLP--------IL-CERHTTSKLSKYEDLQSIK 109 (464)
Q Consensus 43 ~~avkELIeNSlDA~----At~I~I~i~~~g~~~I~V~DNG~GI~~edl~--------~l-~~r~~TSK~~~~~dl~~~~ 109 (464)
.++|+|||+||+||+ |+.|.|.|+.+| .|+|.|||+|||.+..+ .+ ...|++||+ +|.....
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kf---d~~~~k~ 77 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKF---DDDAYKV 77 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEeCCC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCC---CCCCccc
Confidence 457899999999998 999999999887 69999999999976532 33 345677774 4555667
Q ss_pred ccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEc-Cceeccc--ccccCCCceEEEEEeeeccchhhhhcccCCch
Q 012406 110 SMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEP--KACAAVKGTQIMVENLFYNMIARRKTLQNSSD 185 (464)
Q Consensus 110 t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~-G~~~~~~--~~~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~ 185 (464)
+.||||+||++++.+| .++|+|+..+. .|++.|.+ |.....+ .++...+||+|++ +|.|+++.+....
T Consensus 78 s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~G~~~~~~~~~~~~~~~GT~V~F------~Pd~~~F~~~~~~ 149 (594)
T smart00433 78 SGGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNNGKPLSEPKIIGDTKKDGTKVTF------KPDLEIFGMTTDD 149 (594)
T ss_pred cCCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCCCeECccceecCCCCCCCcEEEE------EECHHHhCCcccc
Confidence 9999999999999997 79999998765 49999975 8764433 3456689999994 6999998766678
Q ss_pred hhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEcCCCCCHHHHHHHHhChhhhc--ccEEeeeeccCCCCCceeEEEEE
Q 012406 186 DYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVAS--NLVQLEASEYNDSSSFVFKMDGY 263 (464)
Q Consensus 186 e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~IfG~~va~--~L~~i~~~~~~~~~~~~~~i~G~ 263 (464)
++..|.+.++.+|+.+|+++|.|.+....... .......+.+.+..+.+....- ..+.+..+. .+..++..
T Consensus 150 ~~~~i~~rl~~~A~l~pgl~i~l~der~~~~~-~f~~~~Gl~~yv~~~~~~~~~~~~~~i~~~~~~------~~~~veva 222 (594)
T smart00433 150 DFELLKRRLRELAFLNKGVKITLNDERSDEEE-TFLFEGGIKDYVELLNKNKELLSPEPTYIEGEK------DNIRVEVA 222 (594)
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEeccCCCcce-EEECCCCHHHHHHHHhCCCCcccCCCeEEEEEe------CCcEEEEE
Confidence 89999999999999999999999975421111 1233457778777776543211 112232222 23567776
Q ss_pred EeCCCCCCCCceEEEEEcCcccCC---------hHHHHHHHHHHHhcCC-C---------CCCcEEEEEEEcCCCcee
Q 012406 264 VSNSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAATFP-K---------ASKPFIYMSIVLPPEHVD 322 (464)
Q Consensus 264 is~~~~~~kk~~~~lFIN~R~V~~---------~~L~kaI~~vy~~~lp-k---------~~~Pf~~L~I~i~p~~vD 322 (464)
+.-.+. ....++-|+|+.+... ..|.++|+..++.... + ....++++++.++.-..|
T Consensus 223 l~~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~k~~~i~~~diregl~~vIsvki~~P~Fe 298 (594)
T smart00433 223 FQYTDG--YSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNIKGEDVREGLTAFISVKIPEPQFE 298 (594)
T ss_pred EEccCC--CCcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCCChhhHhhCeEEEEEEEEchheec
Confidence 654432 1346889999999873 4566677666654211 1 246788999999865554
No 18
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.91 E-value=8e-23 Score=224.21 Aligned_cols=281 Identities=17% Similarity=0.220 Sum_probs=192.7
Q ss_pred CCccccccChhHHHhhcCCccccC-----HHHHHHHHHHcchh---cC-CCeEEEEEeeCCeeEEEEEeCCCCCCcccHH
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDLP 88 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~~-----~~~avkELIeNSlD---A~-At~I~I~i~~~g~~~I~V~DNG~GI~~edl~ 88 (464)
....|+.|..--.-+.+.|.+|.+ +.++|+|||+||+| || |+.|.|.++.+| .|+|.|||+|||.+..+
T Consensus 9 ~~~~i~~L~~lE~Vr~RPgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~~h~ 86 (638)
T PRK05644 9 DASQIQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG--SITVTDNGRGIPVDIHP 86 (638)
T ss_pred CHHHCeEecchHHHhcCCCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC--cEEEEEeCccccCCccC
Confidence 445699999999999999999975 47899999999999 99 999999999877 69999999999987322
Q ss_pred --------Hh-HhhcccCCCccccccccccccCcccchhHhhhhhce-EEEEEEEcCCccEEEEEEEcCceeccccccc-
Q 012406 89 --------IL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPKACA- 157 (464)
Q Consensus 89 --------~l-~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs~-l~I~Srt~~~~~~~~~~~~~G~~~~~~~~~~- 157 (464)
.+ +..|++||+. |.....+.||||+||++++.+|+ ++|+|+..+. +|++.|.+|.......+..
T Consensus 87 ~~ki~~~e~i~~~lhag~kfd---~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G~~~~~~~~~~~ 161 (638)
T PRK05644 87 KTGKPAVEVVLTVLHAGGKFG---GGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERGVPVTPLEVIGE 161 (638)
T ss_pred CCCCCchHHheeeecccCccC---CCcccccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEECCeEccCccccCC
Confidence 22 3567777753 33334589999999999999996 9999997665 8999999998753322222
Q ss_pred -CCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCe---eeEEEEcCCCCCHHHHHHHH
Q 012406 158 -AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA---ARADVHSIATSSRLDSIRTV 233 (464)
Q Consensus 158 -~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~---~~~~l~t~~~~s~~~~i~~I 233 (464)
...||+|++ .|.|+++ ++...++..|.+.++++|+.+|+++|.|.+... ....+.. ...+.+-+..+
T Consensus 162 ~~~~GT~I~F------~Pd~~~F-~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~--~~Gl~dyv~~l 232 (638)
T PRK05644 162 TDETGTTVTF------KPDPEIF-ETTEFDYDTLATRLRELAFLNKGLKITLTDEREGEEKEETFHY--EGGIKEYVEYL 232 (638)
T ss_pred cCCCCcEEEE------EECHHHc-CCcccCHHHHHHHHHHHHhhCCCcEEEEEeccCCCcceeEEEc--CCCHHHHHHHH
Confidence 579999995 6999887 777788999999999999999999999997531 1122333 23455555544
Q ss_pred hChhhh--cccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC-----hHHH----HHHHHHHHhc-
Q 012406 234 YGVSVA--SNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLK----RAVEIVYAAT- 301 (464)
Q Consensus 234 fG~~va--~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~-----~~L~----kaI~~vy~~~- 301 (464)
....-. ...+.++... .++.++.-+.-.+. -...++-|+|+-+-.. .-++ ++|+...+..
T Consensus 233 ~~~~~~~~~~~i~~~~~~------~~~~veval~~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~l~~~~~k~~ 304 (638)
T PRK05644 233 NRNKEPLHEEPIYFEGEK------DGIEVEVAMQYNDG--YSENILSFANNINTHEGGTHEEGFKTALTRVINDYARKNK 304 (638)
T ss_pred hcCCCcCCCCCeEEEeec------cCeEEEEEEEecCC--CceEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 322110 1112222211 22444444432221 1234789999998753 2344 4444443321
Q ss_pred -CCCC----------CCcEEEEEEEcCCCcee
Q 012406 302 -FPKA----------SKPFIYMSIVLPPEHVD 322 (464)
Q Consensus 302 -lpk~----------~~Pf~~L~I~i~p~~vD 322 (464)
+.+. ..=++++++.++.-..|
T Consensus 305 ~~Kk~~~~i~~~dIregl~~vVsv~i~nP~F~ 336 (638)
T PRK05644 305 LLKEKDDNLTGEDVREGLTAVISVKHPEPQFE 336 (638)
T ss_pred cccccCCCCChhHHhhceEEEEEEecCCCccc
Confidence 1111 12357788888844443
No 19
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.91 E-value=1.3e-22 Score=223.66 Aligned_cols=279 Identities=19% Similarity=0.236 Sum_probs=187.1
Q ss_pred ccccccChhHHHhhcCCcccc-----CHHHHHHHHHHcchh---cC-CCeEEEEEeeCCeeEEEEEeCCCCCCcccH---
Q 012406 20 PKIHRLEESVVNRIAAGEVIQ-----RPVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDL--- 87 (464)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vI~-----~~~~avkELIeNSlD---A~-At~I~I~i~~~g~~~I~V~DNG~GI~~edl--- 87 (464)
..|+.|..--.-|.+.|.+|. .+.++|+|||+||+| || |+.|.|.++.+| .|+|.|||+||+.+-.
T Consensus 4 ~~i~~L~~lE~vr~RP~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~ 81 (654)
T TIGR01059 4 SSIKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDG--SVTVEDNGRGIPVDIHPEE 81 (654)
T ss_pred HHCeEecchHHHhcCCCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeCCC--cEEEEEeCCCcCccccCcC
Confidence 369999999999999999995 468999999999999 99 999999999887 4999999999998621
Q ss_pred -----HH-hHhhcccCCCccccccccccccCcccchhHhhhhhce-EEEEEEEcCCccEEEEEEEcCceecc--cccccC
Q 012406 88 -----PI-LCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESE--PKACAA 158 (464)
Q Consensus 88 -----~~-l~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs~-l~I~Srt~~~~~~~~~~~~~G~~~~~--~~~~~~ 158 (464)
+. ++..|++||+. |.....+.||||+||++++.+|+ ++|+|++.+.. |++.|.+|....+ ..++..
T Consensus 82 ki~~~e~i~~~l~ag~kf~---~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~--~~~~~~~G~~~~~l~~~~~~~ 156 (654)
T TIGR01059 82 GISAVEVVLTVLHAGGKFD---KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI--YRQEFERGIPLGPLEVVGETK 156 (654)
T ss_pred CCCchHHheeeecccCccC---CCcceecCCccchhHHHHHHhcCeEEEEEEECCeE--EEEEEeCCCcccCceeccCCC
Confidence 11 23445666642 32334789999999999999997 99999986653 8999999976442 234567
Q ss_pred CCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCe---eeEEEEcCCCCCHHHHHHHHhC
Q 012406 159 VKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA---ARADVHSIATSSRLDSIRTVYG 235 (464)
Q Consensus 159 ~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~---~~~~l~t~~~~s~~~~i~~IfG 235 (464)
..||+|+ |++.|.+ +. +...++..|.+.++++|+.||+++|.|.+... ....+...+ .+.+-+..+-.
T Consensus 157 ~~GT~V~----F~pdp~~--F~-~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~--Gl~~yv~~l~~ 227 (654)
T TIGR01059 157 KTGTTVR----FWPDPEI--FE-TTEFDFDILAKRLRELAFLNSGVKISLEDERDGKGKSVTFHYEG--GIKSFVKYLNR 227 (654)
T ss_pred CCCcEEE----EEEChHH--hC-CcccCHHHHHHHHHHhhccCCCeEEEEEeecCCCCceeEEEcCC--cHHHHHHHHhc
Confidence 8999999 7788873 33 56678899999999999999999999987531 122344322 34444433311
Q ss_pred hh-h-hcccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC-----hHHHHHHHHHHHhcC-----C
Q 012406 236 VS-V-ASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATF-----P 303 (464)
Q Consensus 236 ~~-v-a~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~-----~~L~kaI~~vy~~~l-----p 303 (464)
.. . ..+.+.++... .++.++..+.-.+. -...++-|+|+-+-.. ..++.+|......|. -
T Consensus 228 ~~~~l~~~~i~~~~~~------~~~~veva~~~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~l~ 299 (654)
T TIGR01059 228 NKEPLHEEIIYIKGEK------EGIEVEVALQWNDG--YSENILSFVNNINTREGGTHLEGFRSALTRVINSYAKNNKLL 299 (654)
T ss_pred CCCcCCCCCeEEEecc------cCeEEEEEEEecCC--CceeEEEEECcccCCCCCcHHHHHHHHHHHHHHHHHHHhCcc
Confidence 11 0 01123332221 22444444432221 1234689999987643 234444444333332 1
Q ss_pred CCC-----------CcEEEEEEEcCCCcee
Q 012406 304 KAS-----------KPFIYMSIVLPPEHVD 322 (464)
Q Consensus 304 k~~-----------~Pf~~L~I~i~p~~vD 322 (464)
|.. .=++++++.++.-..|
T Consensus 300 K~~~~~i~~~diregl~~vvsv~i~~P~F~ 329 (654)
T TIGR01059 300 KESKPNLTGEDIREGLTAVISVKVPDPQFE 329 (654)
T ss_pred cccCCCCCHHHHhhccEEEEEEecCCCccc
Confidence 211 2367788888754433
No 20
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.91 E-value=2e-22 Score=220.97 Aligned_cols=278 Identities=17% Similarity=0.185 Sum_probs=199.5
Q ss_pred CCccccccChhHHHhhcCCcccc-----CHHHHHHHHHHcchhc----CCCeEEEEEeeCCeeEEEEEeCCCCCCcccHH
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQ-----RPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDLP 88 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~-----~~~~avkELIeNSlDA----~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~ 88 (464)
....|+.|..--.-+.+.|.+|. .|.++|+|||+||+|+ +|+.|.|.++.+| .|+|.|||+|||.++.+
T Consensus 9 ~~~~i~~L~~lE~VrkRP~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg--~I~V~DnGrGIP~~~~~ 86 (631)
T PRK05559 9 NADSIEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG--SVSVRDNGRGIPVGIHP 86 (631)
T ss_pred CHHHCeeccchHHHhcCCCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC--cEEEEEcCCCCCccccc
Confidence 44579999999999999999974 5889999999999998 7999999999887 69999999999999888
Q ss_pred H--------hHhh-cccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCceecc---ccc
Q 012406 89 I--------LCER-HTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESE---PKA 155 (464)
Q Consensus 89 ~--------l~~r-~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~---~~~ 155 (464)
. ++.+ |++||+.. ++.. .+.||+|+|+++++.+| .++|+|+..+. .|++.|.+|..... ..+
T Consensus 87 ~~~~~~~E~v~t~lhagsKf~~--~~yk-~SgGl~GvGls~vNalS~~l~V~s~r~g~--~~~~~f~~G~~~~~l~~~~~ 161 (631)
T PRK05559 87 EEGKSGVEVILTKLHAGGKFSN--KAYK-FSGGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQRFEGGDPVGPLEVVGT 161 (631)
T ss_pred ccCCcchheeeeeccccCccCC--cccc-ccCcccccchhhhhhheeeEEEEEEeCCe--EEEEEEECCcCccCcccccc
Confidence 6 5544 99999864 2333 88999999999999997 69999997654 38999998875332 223
Q ss_pred cc-CCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEcCCCCCHHHHHHHHh
Q 012406 156 CA-AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVY 234 (464)
Q Consensus 156 ~~-~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~If 234 (464)
+. ..+||+|++ +|.|+++ ++...++..|.+.++++|+.+|+++|.+.+.+ ....+... ..+.+.+..++
T Consensus 162 ~~~~~~GT~V~f------~PD~~iF-~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~-~~~~f~~~--~gl~~~v~~~~ 231 (631)
T PRK05559 162 AGKRKTGTRVRF------WPDPKIF-DSPKFSPERLKERLRSKAFLLPGLTITLNDER-ERQTFHYE--NGLKDYLAELN 231 (631)
T ss_pred ccCCCCCcEEEE------EECHHHc-CCcccCHHHHHHHHHHHHhhCCCeEEEEEeCC-ceEEEECC--ccHHHHHHHHh
Confidence 43 679999999 5999876 76677888999999999999999999999876 22234443 46888888888
Q ss_pred Chhh-h-cc-cEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC---------hHHHHHHHHHHHhc-
Q 012406 235 GVSV-A-SN-LVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAAT- 301 (464)
Q Consensus 235 G~~v-a-~~-L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~---------~~L~kaI~~vy~~~- 301 (464)
...- . .. .+.++... .+..++.-+.-.+.. ...++-|+|+-+-.. ..|.++|+...+..
T Consensus 232 ~~~~~i~~~~~i~~~~~~------~~~~veval~~~~~~--~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~~~~ 303 (631)
T PRK05559 232 EGKETLPEEFVGSFEGEA------EGEAVEWALQWTDEG--GENIESYVNLIPTPQGGTHENGFREGLLKAVREFAEKRN 303 (631)
T ss_pred CCCCccCCCCceEEeeee------ccceEEEEEEecCCC--CeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 5421 1 11 12222111 123333333322211 236789999998764 24455555544321
Q ss_pred -CCCC---------CCcEEEEEEEcCCCc
Q 012406 302 -FPKA---------SKPFIYMSIVLPPEH 320 (464)
Q Consensus 302 -lpk~---------~~Pf~~L~I~i~p~~ 320 (464)
++++ ..=++++++.++--.
T Consensus 304 l~k~~~~l~~~diregl~~vvsvki~~P~ 332 (631)
T PRK05559 304 LLPKGKKLEGEDVREGLAAVLSVKIPEPQ 332 (631)
T ss_pred ccccccCCChhhHhhceEEEEEEEcCCCc
Confidence 1111 133677888887433
No 21
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.88 E-value=1.4e-21 Score=216.23 Aligned_cols=180 Identities=21% Similarity=0.306 Sum_probs=153.4
Q ss_pred CCccccccChhHHHhhcCCccccC------HHHHHHHHHHcchh---cC-CCeEEEEEeeCCeeEEEEEeCCCCCCcc--
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQR------PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYE-- 85 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~~------~~~avkELIeNSlD---A~-At~I~I~i~~~g~~~I~V~DNG~GI~~e-- 85 (464)
....|+.|..--.-|.+.|.+|.+ +.++|+|||+||+| || |+.|.|+|+.+| .|+|.|||+|||.+
T Consensus 8 ~a~~i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg--sIsV~DnGrGIPvd~h 85 (756)
T PRK14939 8 GASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG--SVSVSDNGRGIPTDIH 85 (756)
T ss_pred CHHHCeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCC--eEEEEEcCCcccCCcc
Confidence 345799999999999999999974 57999999999999 99 999999999887 69999999999997
Q ss_pred --------cHHHhHhhcccCCCccccccccccccCcccchhHhhhhhce-EEEEEEEcCCccEEEEEEEcCceecccccc
Q 012406 86 --------DLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPKAC 156 (464)
Q Consensus 86 --------dl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs~-l~I~Srt~~~~~~~~~~~~~G~~~~~~~~~ 156 (464)
|+. ++.+|++||+.+ |+..+ +.||+|+|++++..+|+ ++|+++..+. -|++.|.+|......+..
T Consensus 86 ~~~g~~~~Elv-lt~lhAggKfd~--~~ykv-SgGlhGvG~svvNAlS~~l~v~v~r~gk--~~~q~f~~G~~~~~l~~~ 159 (756)
T PRK14939 86 PEEGVSAAEVI-MTVLHAGGKFDQ--NSYKV-SGGLHGVGVSVVNALSEWLELTIRRDGK--IHEQEFEHGVPVAPLKVV 159 (756)
T ss_pred cccCCchhhhe-eeeecccCCCCC--Ccccc-cCCccCccceEeehccCeEEEEEEeCCe--EEEEEEecCccccCcccc
Confidence 333 458999999975 66666 89999999999999996 9999998665 399999999764422222
Q ss_pred --cCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECC
Q 012406 157 --AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (464)
Q Consensus 157 --~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g 212 (464)
....||+|++ +|.|+++ ++...++..|.+.++.+|..||+++|.+.+..
T Consensus 160 g~~~~~GT~V~F------~PD~~iF-~~~~~~~~~i~~rl~elA~lnpgl~i~l~der 210 (756)
T PRK14939 160 GETDKTGTEVRF------WPSPEIF-ENTEFDYDILAKRLRELAFLNSGVRIRLKDER 210 (756)
T ss_pred CCcCCCCcEEEE------EECHHHc-CCcccCHHHHHHHHHHHhhcCCCCEEEEeccC
Confidence 2579999999 5999887 66677888999999999999999999999753
No 22
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.87 E-value=1.4e-21 Score=206.84 Aligned_cols=159 Identities=25% Similarity=0.366 Sum_probs=130.0
Q ss_pred cCHHHHHHHHHHcchhcCCC-----eEEEEEeeCC--eeEEEEEeCCCCCCcccHHHhHhh-cccCCCcccccccccccc
Q 012406 40 QRPVSAVKELVENSLDADAT-----SINVVVKDGG--LKLIQVSDDGHGIRYEDLPILCER-HTTSKLSKYEDLQSIKSM 111 (464)
Q Consensus 40 ~~~~~avkELIeNSlDA~At-----~I~I~i~~~g--~~~I~V~DNG~GI~~edl~~l~~r-~~TSK~~~~~dl~~~~t~ 111 (464)
..+.++++|||+||+||+++ .|.|.+...+ ...|.|.|||+||++++++.+|.+ |+|||+.+ ...++
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~-----~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHR-----IIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccc-----ccccC
Confidence 45789999999999999876 6888887532 336999999999999999999988 78999763 24788
Q ss_pred CcccchhHhhhhhce------EEEEEEEcCCccEEEEEEE------cCceecc-cccccCCCceEEEEEeeeccchhhhh
Q 012406 112 GFRGEALASMTYVGH------VTVTTITKGHLHGYRVSYR------DGVMESE-PKACAAVKGTQIMVENLFYNMIARRK 178 (464)
Q Consensus 112 GfRGeALaSis~vs~------l~I~Srt~~~~~~~~~~~~------~G~~~~~-~~~~~~~~GTtV~V~~LF~n~PvRrk 178 (464)
|++|+||+++..+++ ++|+|++.++..||.+.+. +|++... +.....++||+|+|+ |+|.|+|++
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V~v~--f~~~~~r~~ 179 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRIELE--FKGVSYRRS 179 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEEEEE--ECCceeecc
Confidence 999999999988875 8999999988888888874 5765332 222223589999999 999999842
Q ss_pred cccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCe
Q 012406 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA 213 (464)
Q Consensus 179 ~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~ 213 (464)
..+|.++|+++|++||+++|.|.+...
T Consensus 180 --------k~~i~e~l~~~Al~nP~~~i~l~~~~~ 206 (488)
T TIGR01052 180 --------KQGVYEYLRRTAVANPHAKIVLVDPDG 206 (488)
T ss_pred --------HHHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence 158999999999999999999998643
No 23
>PRK05218 heat shock protein 90; Provisional
Probab=99.86 E-value=2e-20 Score=204.76 Aligned_cols=275 Identities=19% Similarity=0.247 Sum_probs=186.8
Q ss_pred ccccCHHHHHHHHHHcchhcC----------------C--CeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccC-
Q 012406 37 EVIQRPVSAVKELVENSLDAD----------------A--TSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS- 97 (464)
Q Consensus 37 ~vI~~~~~avkELIeNSlDA~----------------A--t~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TS- 97 (464)
....+|..+|+|||.||.||. + ..|.|.++.++. .|+|+|||+||+.+|+...+.++++|
T Consensus 22 ~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~i~I~DnG~GMt~eel~~~l~~ia~Sg 100 (613)
T PRK05218 22 SLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEAR-TLTISDNGIGMTREEVIENLGTIAKSG 100 (613)
T ss_pred hhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCC-eEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 455789999999999999993 3 357777776665 59999999999999999999999998
Q ss_pred ------CCccccccccccccCcccchhHhhhhhc-eEEEEEEEcC-CccEEEEEEEcCceeccccccc-CCCceEEEEEe
Q 012406 98 ------KLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKG-HLHGYRVSYRDGVMESEPKACA-AVKGTQIMVEN 168 (464)
Q Consensus 98 ------K~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~-~~~~~~~~~~~G~~~~~~~~~~-~~~GTtV~V~~ 168 (464)
|+.... -.....+|..|.|++|+..++ +|+|+||+.+ +..||++...+|.. ....++. ..+||+|+|.
T Consensus 101 ~~~f~~k~~~~~-~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~-~~i~~~~~~~~GT~I~l~- 177 (613)
T PRK05218 101 TKEFLEKLKGDQ-KKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGE-YTIEEIEKEERGTEITLH- 177 (613)
T ss_pred chhHHHHhhccc-ccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCce-eEEeECCCCCCCcEEEEE-
Confidence 332110 012356788888888888887 8999999977 66788888765543 1223333 3799999995
Q ss_pred eeccchhhhhcccCCchhh---hhHHHHHHHHH--hhCCCeEE-----EEEECCeeeEEEEcCCCCCHHHHHHHHhChhh
Q 012406 169 LFYNMIARRKTLQNSSDDY---TKIVDLLSRMA--IHHTNVSF-----SCRKHGAARADVHSIATSSRLDSIRTVYGVSV 238 (464)
Q Consensus 169 LF~n~PvRrk~lk~~~~e~---~~I~~~l~~yA--l~~p~v~f-----~l~~~g~~~~~l~t~~~~s~~~~i~~IfG~~v 238 (464)
++....++ .+|.+++++|| +.+| |.| .+.+.+ ...|...+. +..+.....|+..+
T Consensus 178 -----------Lk~~~~e~~e~~~i~~li~kys~~l~~P-I~~~~~~~~~in~~--~~~w~~~~~-~i~~~~~~~fy~~~ 242 (613)
T PRK05218 178 -----------LKEDEDEFLDEWRIRSIIKKYSDFIPVP-IKLEKEEEETINSA--SALWTRSKS-EITDEEYKEFYKHL 242 (613)
T ss_pred -----------ECcchhhhcCHHHHHHHHHHHHhcCCCC-EEEecccceeecCC--ccceecCCc-cccHHHHHHHhhhh
Confidence 34434333 78999999999 7777 777 233333 344554443 67777778877776
Q ss_pred hcc----cEEeeeeccCCCCCceeEEEEEEeCCCCC-------CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCC
Q 012406 239 ASN----LVQLEASEYNDSSSFVFKMDGYVSNSNYV-------AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASK 307 (464)
Q Consensus 239 a~~----L~~i~~~~~~~~~~~~~~i~G~is~~~~~-------~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~ 307 (464)
+.. |..+++.. + ..+.++|++..|... ..+..+.+|||+|+|.+.. ...||. |
T Consensus 243 ~~~~~~pl~~i~~~~--e---~~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~---------~~lLP~--w 306 (613)
T PRK05218 243 AHDFDDPLFWIHNNV--E---GPFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDA---------EELLPE--Y 306 (613)
T ss_pred cccccCCcEEEEccc--C---CceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCch---------hhhchH--H
Confidence 444 77787654 1 458999998766532 2345578999999998753 122232 1
Q ss_pred cEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 012406 308 PFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (464)
Q Consensus 308 Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L 352 (464)
- .|+.=.++.+.+-.||. || .+.++.++..|++.|.+.+
T Consensus 307 l-~Fv~GVVDs~dLplnvS---RE--~lq~~~~l~~i~~~l~~kv 345 (613)
T PRK05218 307 L-RFVKGVIDSEDLPLNVS---RE--ILQEDRVVKKIRKAITKKV 345 (613)
T ss_pred H-hheEEEeecCCCCCccC---HH--HHhcCHHHHHHHHHHHHHH
Confidence 1 12333556566666775 33 5666677777766655543
No 24
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.80 E-value=7.7e-19 Score=187.87 Aligned_cols=156 Identities=24% Similarity=0.336 Sum_probs=123.4
Q ss_pred HHHHHHHHHHcchhcCCC-----eEEEEEe----eCCeeEEEEEeCCCCCCcccHHHhHhhc-ccCCCcccccccccccc
Q 012406 42 PVSAVKELVENSLDADAT-----SINVVVK----DGGLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIKSM 111 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At-----~I~I~i~----~~g~~~I~V~DNG~GI~~edl~~l~~r~-~TSK~~~~~dl~~~~t~ 111 (464)
+.++|+|||+||+||+++ .|.|.+. .++...|.|.|||+||++++++.+|.+| ++||+... ..++
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~-----~~s~ 111 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNL-----RQSR 111 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccccc-----ccCC
Confidence 589999999999999876 5888876 3455679999999999999999999885 88886532 3678
Q ss_pred CcccchhHhhhhhc------eEEEEEEEcCCccEEEEEEE------cCceec-ccccccCCCceEEEEEeeeccchhhhh
Q 012406 112 GFRGEALASMTYVG------HVTVTTITKGHLHGYRVSYR------DGVMES-EPKACAAVKGTQIMVENLFYNMIARRK 178 (464)
Q Consensus 112 GfRGeALaSis~vs------~l~I~Srt~~~~~~~~~~~~------~G~~~~-~~~~~~~~~GTtV~V~~LF~n~PvRrk 178 (464)
|++|+||+++..++ .++|.|+..+...+|.+.+. .|.+.. +..+...++||+|.|+ ++.+++.+
T Consensus 112 G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~-l~~~~~~~-- 188 (535)
T PRK04184 112 GQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELE-IEGDWYRA-- 188 (535)
T ss_pred CCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEE-ECCcChhh--
Confidence 99999998876554 37899998777667777663 344422 1223467899999999 88888754
Q ss_pred cccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCe
Q 012406 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA 213 (464)
Q Consensus 179 ~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~ 213 (464)
.++|.++++++|++||++.|.+.+.+.
T Consensus 189 --------~~~I~e~i~r~Al~nP~~~~~l~~~~g 215 (535)
T PRK04184 189 --------KQRIYEYLKRTAIVNPHARITFKDPDG 215 (535)
T ss_pred --------HHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 367899999999999999999997643
No 25
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=99.74 E-value=1.1e-17 Score=141.45 Aligned_cols=101 Identities=33% Similarity=0.475 Sum_probs=90.9
Q ss_pred HHHHHHHhChhhhcccEEeeeeccCCCCCceeEEEEEEeCCCCC-CCCceEEEEEcCcccC-ChHHHHHHHHHHHhcC--
Q 012406 227 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVE-CAPLKRAVEIVYAATF-- 302 (464)
Q Consensus 227 ~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~-~kk~~~~lFIN~R~V~-~~~L~kaI~~vy~~~l-- 302 (464)
.+++..+||...+.+++.++.+. .+++++|+++.++.. .++..|++|||||++. ...+.++|.++|..++
T Consensus 2 ~~~i~~~~g~~~~~~~~~~~~~~------~~~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~~ 75 (107)
T cd00329 2 KDRLAEILGDKVADKLIYVEGES------DGFRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALNG 75 (107)
T ss_pred HhHHHHHhCHHhHhhcEEEeccC------CCEEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhcc
Confidence 57899999999988899987665 469999999988763 3456799999999999 9999999999999999
Q ss_pred -CCCCCcEEEEEEEcCCCceecccCCCCCeEe
Q 012406 303 -PKASKPFIYMSIVLPPEHVDVNVHPTKREVS 333 (464)
Q Consensus 303 -pk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~ 333 (464)
+.+.+|+++|+|++|++.+||||||+|++|+
T Consensus 76 ~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v~ 107 (107)
T cd00329 76 DDVRRYPVAVLSLKIPPSLVDVNVHPTKEEVR 107 (107)
T ss_pred cCCCCCCEEEEEEEeChHHeeeCCCCCccccC
Confidence 9999999999999999999999999999984
No 26
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.67 E-value=4.5e-16 Score=160.24 Aligned_cols=164 Identities=23% Similarity=0.264 Sum_probs=126.0
Q ss_pred ccCHHHHHHHHHHcchhcCC-----CeEEEEEeeC--CeeEEEEEeCCCCCCcccHHHhH-hhcccCCCccccccccccc
Q 012406 39 IQRPVSAVKELVENSLDADA-----TSINVVVKDG--GLKLIQVSDDGHGIRYEDLPILC-ERHTTSKLSKYEDLQSIKS 110 (464)
Q Consensus 39 I~~~~~avkELIeNSlDA~A-----t~I~I~i~~~--g~~~I~V~DNG~GI~~edl~~l~-~r~~TSK~~~~~dl~~~~t 110 (464)
+.++.++|+|||+||+||+- ..|.|.|+.. +...+.|+|||.||+.+.++.+| ..+++||+....+..+.+.
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhcccccc
Confidence 45788999999999999974 4788888753 46689999999999999999997 4589999976666667788
Q ss_pred cCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEE--E----cCceecc--cccccCCCceEEEEEeeeccchhhhhccc
Q 012406 111 MGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSY--R----DGVMESE--PKACAAVKGTQIMVENLFYNMIARRKTLQ 181 (464)
Q Consensus 111 ~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~--~----~G~~~~~--~~~~~~~~GTtV~V~~LF~n~PvRrk~lk 181 (464)
.|..|..|+|..+.+ .+.|.|+|.++..+|.... + .+.+... .+...++|||+|.++ |=.++..+++
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~-~~~~~~~~~~--- 189 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE-LKGVWYRAKR--- 189 (538)
T ss_pred ccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE-ecccchhhcc---
Confidence 888888999999988 4999999998776765433 2 2333222 223456899999997 2223333222
Q ss_pred CCchhhhhHHHHHHHHHhhCCCeEEEEEECC
Q 012406 182 NSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (464)
Q Consensus 182 ~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g 212 (464)
+.+.+++++.|+.+||..|.|++.+
T Consensus 190 ------qgi~eYlkrtaiinPhA~I~l~dPd 214 (538)
T COG1389 190 ------QGIYEYLKRTAIINPHARIVLKDPD 214 (538)
T ss_pred ------cCHHHHHHHHhhcCCceEEEEECCC
Confidence 2378999999999999999999864
No 27
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.60 E-value=2.9e-16 Score=140.84 Aligned_cols=101 Identities=33% Similarity=0.520 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHcchhcCCCeEEEEEeeC--CeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch-
Q 012406 41 RPVSAVKELVENSLDADATSINVVVKDG--GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA- 117 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At~I~I~i~~~--g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA- 117 (464)
++..||+|||+||+||+|+.|.|.++.. +...|.|.|||.||+.++|..++..+.++|... ....++|++|.+
T Consensus 2 ~~~~al~ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~----~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 2 SPEDALRELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSE----KDRQSIGRFGIGL 77 (137)
T ss_dssp SCTHHHHHHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHH----HHGGGGGGGTSGC
T ss_pred cHHHHHHHHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCch----hhhhcCCCcceEH
Confidence 3578999999999999999999999753 445799999999999999999887777777421 134678999998
Q ss_pred -hHhhhhhceEEEEEEEcCCccEEEEEEE
Q 012406 118 -LASMTYVGHVTVTTITKGHLHGYRVSYR 145 (464)
Q Consensus 118 -LaSis~vs~l~I~Srt~~~~~~~~~~~~ 145 (464)
+|.++....++|+|++.+...++.+.+.
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred HHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 4455555589999999998888887765
No 28
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=99.56 E-value=2.4e-13 Score=149.41 Aligned_cols=246 Identities=17% Similarity=0.174 Sum_probs=164.7
Q ss_pred CCccccccChhHHHhhcCCccccC-----HHHHHHHHHHcchh----cCCCeEEEEEeeCCeeEEEEEeCCCCCCcccH-
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD----ADATSINVVVKDGGLKLIQVSDDGHGIRYEDL- 87 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~~-----~~~avkELIeNSlD----A~At~I~I~i~~~g~~~I~V~DNG~GI~~edl- 87 (464)
....|+.|..--.-|.+.|.+|.+ +.+.+.|+|+||+| ..|+.|.|+++.+| .|+|.|||+|||.+--
T Consensus 6 ~~~~i~~L~glE~VRkRPgMYIGst~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dg--sitV~DnGrGIPv~~h~ 83 (637)
T TIGR01058 6 NADAIKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDN--SITVQDDGRGIPTGIHQ 83 (637)
T ss_pred CHHHCeeecccHHHhcCCCCeECCCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcCCC--eEEEEECCCcccCcccC
Confidence 345799999999999999999975 57899999999999 45999999999877 5999999999997532
Q ss_pred -------HHh-HhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcC-ceecccc--c
Q 012406 88 -------PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG-VMESEPK--A 155 (464)
Q Consensus 88 -------~~l-~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G-~~~~~~~--~ 155 (464)
+.+ +.-|+++|+.. -.-..+-|++|++++....+| .++|+++..+. -|...|.+| .....++ .
T Consensus 84 ~~~~~~~E~v~t~LhaGgkfd~---~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk--~~~q~f~~Gg~~~~~l~~~~ 158 (637)
T TIGR01058 84 DGNISTVETVFTVLHAGGKFDQ---GGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQ--IYQQRFENGGKIVQSLKKIG 158 (637)
T ss_pred cCCCccceeEEEEecccCcCCC---CcccccCCcccccccccceeeceEEEEEEECCE--EEEEEEecCCcCcCCccccc
Confidence 222 35577788643 223456799999999999999 59999986553 588899886 5432221 2
Q ss_pred ccCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCee-eEEEEcCCCCCHHHHHHHHh
Q 012406 156 CAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVY 234 (464)
Q Consensus 156 ~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~-~~~l~t~~~~s~~~~i~~If 234 (464)
....+||+|++. |....+ ....-.++.|.+.++.+|..+|++++.+.+.... ...+.. ...+.+-+..+-
T Consensus 159 ~~~~~GT~V~F~------PD~~iF-~~~~f~~d~l~~RlrelA~Ln~GL~I~l~der~~~~~~f~~--~~Gl~~yv~~l~ 229 (637)
T TIGR01058 159 TTKKTGTLVHFH------PDPTIF-KTTQFNSNIIKERLKESAFLLKKLKLTFTDKRTNKTTVFFY--ENGLVDFVDYIN 229 (637)
T ss_pred CCCCCceEEEEE------eCHHHc-CCCccCHHHHHHHHHHHhccCCCcEEEEEecCCCceEEEEc--CcCHHHHHHHhc
Confidence 335799999996 665443 3334456779999999999999999999975321 112332 233444444322
Q ss_pred Chh-hhcccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC
Q 012406 235 GVS-VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC 287 (464)
Q Consensus 235 G~~-va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~ 287 (464)
... .....+.++... .++.++..+.-.+. ....++-|+|+-+-..
T Consensus 230 ~~k~~l~~~i~~~~~~------~~~~vevAl~~~~~--~~e~~~SFvN~I~T~~ 275 (637)
T TIGR01058 230 ETKETLSQVTYFEGEK------NGIEVEVAFQFNDG--DSENILSFANSVKTKE 275 (637)
T ss_pred CCCCcCCccEEEEEEE------CCcEEEEEEEEcCC--CCeEEEEeECCccCCC
Confidence 111 111122232222 12445544442221 1235789999988754
No 29
>PRK14083 HSP90 family protein; Provisional
Probab=99.52 E-value=2.8e-13 Score=147.95 Aligned_cols=282 Identities=15% Similarity=0.157 Sum_probs=163.0
Q ss_pred CCccccCHHHHHHHHHHcchhcCCC----------eEEEEE-eeCCeeEEEEEeCCCCCCcccHHHhH-hhcccCCCccc
Q 012406 35 AGEVIQRPVSAVKELVENSLDADAT----------SINVVV-KDGGLKLIQVSDDGHGIRYEDLPILC-ERHTTSKLSKY 102 (464)
Q Consensus 35 ag~vI~~~~~avkELIeNSlDA~At----------~I~I~i-~~~g~~~I~V~DNG~GI~~edl~~l~-~r~~TSK~~~~ 102 (464)
+...+.++..+|+|||.||.||++. .|.|.+ +.+ ...|.|+|||.||+.+++...+ .-...+|....
T Consensus 17 ~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~-~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~ 95 (601)
T PRK14083 17 SRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAG-GGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDEN 95 (601)
T ss_pred HHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCC-CcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhh
Confidence 3456678999999999999999876 788888 443 3579999999999999998754 33444443311
Q ss_pred cccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEE-EcCceeccc-ccccCCCceEEEEEeeeccchhhhhc
Q 012406 103 EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSY-RDGVMESEP-KACAAVKGTQIMVENLFYNMIARRKT 179 (464)
Q Consensus 103 ~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~-~~G~~~~~~-~~~~~~~GTtV~V~~LF~n~PvRrk~ 179 (464)
-........|..|.|++|...+| +++|+||..++..+|.+.- .+|....+. ......+||+|++.-- +.-+.+
T Consensus 96 ~~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l~----~d~~~~ 171 (601)
T PRK14083 96 LGFARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRPR----PDAEEW 171 (601)
T ss_pred hcccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEec----Cchhhh
Confidence 00012356899999999999998 6999999975555665543 345443222 1234479999999721 111111
Q ss_pred ccCCchhhhhHHHHHHHHHhhCC-CeEEEEE--ECCeeeEEEEcCCC------CCHHHHHHHHhChhhhcccEEeeeecc
Q 012406 180 LQNSSDDYTKIVDLLSRMAIHHT-NVSFSCR--KHGAARADVHSIAT------SSRLDSIRTVYGVSVASNLVQLEASEY 250 (464)
Q Consensus 180 lk~~~~e~~~I~~~l~~yAl~~p-~v~f~l~--~~g~~~~~l~t~~~------~s~~~~i~~IfG~~va~~L~~i~~~~~ 250 (464)
+ +..++.+++++|+-+-| -|.+... .-+...+.|.-.+. ..+.+-.+.+|+. .-|-.+.+..
T Consensus 172 ~-----~~~~i~~li~~ys~~i~~pI~l~~~~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~~---~Pl~~ih~~~- 242 (601)
T PRK14083 172 L-----ERETVEELAKKYGSLLPVPIRVEGEKGGVNETPPPWTRDYPDPETRREALLAYGEELLGF---TPLDVIPLDV- 242 (601)
T ss_pred c-----cHHHHHHHHHHHhccCCCCcccCCceeeecCCCCCccCCccccCccHHHHHHHHHHhcCC---Cchheeeecc-
Confidence 1 23578889999985433 1222210 11122233433221 1255667777772 2244444443
Q ss_pred CCCCCceeEEEEEE---eCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCC
Q 012406 251 NDSSSFVFKMDGYV---SNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHP 327 (464)
Q Consensus 251 ~~~~~~~~~i~G~i---s~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhP 327 (464)
+. ....|.+ ........+...-||+|+-+|.+.. . ..+|. | ..++.=.++.+.+-.||.
T Consensus 243 -e~----~~~~~~Ly~iP~~~~~~~~~~v~LY~~rVfI~d~~-~--------~lLP~--w-l~FvrGVVDS~DLpLNvS- 304 (601)
T PRK14083 243 -PS----GGLEGVAYVLPYAVSPAARRKHRVYLKRMLLSEEA-E--------NLLPD--W-AFFVRCVVNTDELRPTAS- 304 (601)
T ss_pred -cc----hhheEEEEecCCCCCccccCceEEEeeeeEeecch-h--------hhhHH--H-HHHheeeeecCCCCCccC-
Confidence 21 1223432 2221111233456999998886542 1 12221 1 112334566666667776
Q ss_pred CCCeEecCChhHHHHHHHHHHHHHH
Q 012406 328 TKREVSLLNQELIVEKIQSAVELKL 352 (464)
Q Consensus 328 tK~eV~F~~e~~Ii~~I~~~l~~~L 352 (464)
|| .+.++.++..|++.|.+.+
T Consensus 305 --RE--~LQ~~~~l~~ir~~i~kki 325 (601)
T PRK14083 305 --RE--ALYEDDALAAVREELGEAI 325 (601)
T ss_pred --HH--HHccCHHHHHHHHHHHHHH
Confidence 33 3556666777776655544
No 30
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=99.52 E-value=2.9e-13 Score=145.01 Aligned_cols=278 Identities=18% Similarity=0.244 Sum_probs=181.9
Q ss_pred CCccccccChhHHHhhcCCccccC------HHHHHHHHHHcchhc---C-CCeEEEEEeeCCeeEEEEEeCCCCCCcccH
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQR------PVSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYEDL 87 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~~------~~~avkELIeNSlDA---~-At~I~I~i~~~g~~~I~V~DNG~GI~~edl 87 (464)
....|+.|..--.-|.++|.+|.| +.+.+.|.|+||+|- | |+.|.|+++.++ +|+|.|||+|||.+--
T Consensus 7 ~a~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~--sisV~DnGRGIPvdiH 84 (635)
T COG0187 7 DASSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG--SISVEDNGRGIPVDIH 84 (635)
T ss_pred CHhHceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCC--eEEEEECCCCCccccC
Confidence 345799999999999999999863 677999999999994 4 999999998877 5999999999998752
Q ss_pred H--------Hh-HhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCceecccc---
Q 012406 88 P--------IL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--- 154 (464)
Q Consensus 88 ~--------~l-~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~~~--- 154 (464)
+ .+ ..-|+++|+.. -.--.+-|..|.+.+-...+| ++.|+++..+. -|+..|.+|....+.+
T Consensus 85 ~~~~~~~vEvI~T~LHAGGKFd~---~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk--~y~q~f~~G~~~~~l~~ig 159 (635)
T COG0187 85 PKEKVSAVEVIFTVLHAGGKFDN---DSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYRQRFERGVPVTPLEVIG 159 (635)
T ss_pred CCCCCCceEEEEEeeccCcccCC---CccEeecCCCccceEEEecccceEEEEEEECCE--EEEEEEeCCCcCCCceecc
Confidence 2 22 35689999754 233456789999988888888 69999988754 5899999987632221
Q ss_pred cc-cCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCee--eEEEEcCCCCCHHHHHH
Q 012406 155 AC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA--RADVHSIATSSRLDSIR 231 (464)
Q Consensus 155 ~~-~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~--~~~l~t~~~~s~~~~i~ 231 (464)
.| ...+||+|++. |.-.- |.+....+..+...++.+|..++++.+.+.+.-.. ...|+. ..-+.+-+.
T Consensus 160 ~~~~~~~GT~V~F~------PD~~i-F~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~~~~~~y--~~Gl~~yv~ 230 (635)
T COG0187 160 STDTKKTGTKVRFK------PDPEI-FGETEFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHY--EGGLKDYVE 230 (635)
T ss_pred cCCCCCCccEEEEE------cChHh-cCCcccCHHHHHHHHHHHhccCCCCEEEEEeccCCcccceeec--ccHHHHHHH
Confidence 11 24689999985 54433 33356678899999999999999999999875321 112332 223344443
Q ss_pred HHhChh-h-hcccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC---------hHHHHHHHHHHHh
Q 012406 232 TVYGVS-V-ASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAA 300 (464)
Q Consensus 232 ~IfG~~-v-a~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~---------~~L~kaI~~vy~~ 300 (464)
.+-... . ..+.+.+ .. +. .+..++--+.-.+.. ...++-|+|+=+-.. ..|-|+|++....
T Consensus 231 ~l~~~k~~l~~~~~~~--~~--~~--~~~~vEvA~q~~d~~--~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~ 302 (635)
T COG0187 231 YLNKGKTPLHEEIFYF--NG--EK--DGIAVEVALQWNDGY--SENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKK 302 (635)
T ss_pred HHhcCCCccccCceec--cc--Cc--cceEEEEEEEEecCC--ceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 333211 0 0111111 11 11 223344333322211 245789999988754 2455555554433
Q ss_pred c--CCCC--------CCcEEEEEEEcCCC
Q 012406 301 T--FPKA--------SKPFIYMSIVLPPE 319 (464)
Q Consensus 301 ~--lpk~--------~~Pf~~L~I~i~p~ 319 (464)
. ++++ ..-.++|++.+|.-
T Consensus 303 ~~~~k~~~l~g~Diregl~aviSvki~~P 331 (635)
T COG0187 303 KNLLKEGDLTGDDIREGLTAVISVKIPDP 331 (635)
T ss_pred hCcCcccCCCHHHHhhccEEEEEEECCCC
Confidence 2 2221 13367899999843
No 31
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.5e-11 Score=130.89 Aligned_cols=277 Identities=19% Similarity=0.283 Sum_probs=155.9
Q ss_pred cCHHHHHHHHHHcchhcC------------------CCeEEEEEeeCCeeEEEEEeCCCCCCcccHHH-hHhhcccCC--
Q 012406 40 QRPVSAVKELVENSLDAD------------------ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPI-LCERHTTSK-- 98 (464)
Q Consensus 40 ~~~~~avkELIeNSlDA~------------------At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~-l~~r~~TSK-- 98 (464)
.++.-.|+|||.||-||. .-.|.|.++.+. +.++|.|||.||+++|+.. ++.---+++
T Consensus 26 SnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~-kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~ 104 (623)
T COG0326 26 SNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDN-KTLTISDNGIGMTKDEVIENLGTIAKSGTKE 104 (623)
T ss_pred CCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccC-CEEEEEeCCCCCCHHHHHHHHHHhhhccHHH
Confidence 466779999999999983 235666666654 4699999999999999864 232111111
Q ss_pred -Ccccc-ccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEE-cCceecccccccCC-CceEEEEEeeeccc
Q 012406 99 -LSKYE-DLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAV-KGTQIMVENLFYNM 173 (464)
Q Consensus 99 -~~~~~-dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~-~G~~~~~~~~~~~~-~GTtV~V~~LF~n~ 173 (464)
+.... |-....-.|..|.|++|...|| +|+|+||..++..+|.++-+ +|....++-. ... +||+|+..
T Consensus 105 F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~~~-~~~~~GT~I~L~------ 177 (623)
T COG0326 105 FLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDID-KEPRRGTEITLH------ 177 (623)
T ss_pred HHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEeecc-CCCCCCcEEEEE------
Confidence 11111 1123456899999999999999 69999999998888866544 3444322211 123 69999997
Q ss_pred hhhhhcccCCchhh---hhHHHHHHHHHhhCCC-eEEEEEEC-----------CeeeEEEEcCCCCCHHHHHHHHhC---
Q 012406 174 IARRKTLQNSSDDY---TKIVDLLSRMAIHHTN-VSFSCRKH-----------GAARADVHSIATSSRLDSIRTVYG--- 235 (464)
Q Consensus 174 PvRrk~lk~~~~e~---~~I~~~l~~yAl~~p~-v~f~l~~~-----------g~~~~~l~t~~~~s~~~~i~~IfG--- 235 (464)
|+....+| .+|.+++.+|+-+-+- |.+..... ++....|.-++..=..+.....|-
T Consensus 178 ------Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~~~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~ 251 (623)
T COG0326 178 ------LKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKDEEVIEWETINKAKALWTRNKSEITDEEYKEFYKHLA 251 (623)
T ss_pred ------ECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccccccchhHHHhccccCcccCChhhCChHHHHHHHHHhh
Confidence 22222222 4799999999976431 33333221 122334444443322233333331
Q ss_pred hhhhcccEEeeeeccCCCCCceeEEEEEE--e-CCCCC----CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCc
Q 012406 236 VSVASNLVQLEASEYNDSSSFVFKMDGYV--S-NSNYV----AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKP 308 (464)
Q Consensus 236 ~~va~~L~~i~~~~~~~~~~~~~~i~G~i--s-~~~~~----~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~P 308 (464)
.....-|..+....+ ..+...+++ . .+++. -+|..+-||||+-.|.+.. ..++|. |
T Consensus 252 ~d~~~Pl~~~h~~~E-----G~~ey~~ll~iP~~aPfdl~~~~~k~glkLYv~rVfI~Dd~---------~~llP~--y- 314 (623)
T COG0326 252 HDFDDPLLWIHNKVE-----GRLEYTALLFIPSKAPFDLFRRDRKRGLKLYVNRVFIMDDA---------EDLLPN--Y- 314 (623)
T ss_pred cccCCCeEEEecccc-----cceEEEEEEEccCCCCcccccccccCCcEEEEeeeEEeCCh---------hhhhhH--H-
Confidence 122223444444431 224445543 2 22221 1234466999999997642 122221 1
Q ss_pred EEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 012406 309 FIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (464)
Q Consensus 309 f~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L 352 (464)
+.|+.=.|+...+=.||. ||+ +.++.++..|+++|.+.+
T Consensus 315 l~Fv~GvIDS~DLpLNvS---RE~--LQ~n~~l~~Irk~l~kkv 353 (623)
T COG0326 315 LRFVRGVIDSEDLPLNVS---REI--LQQNRILAAIRKALTKKV 353 (623)
T ss_pred HhhheeeeecCCCCcccC---HHH--HccCHHHHHHHHHHHHHH
Confidence 111222344444445665 444 667777888877766555
No 32
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.33 E-value=2.7e-11 Score=134.05 Aligned_cols=160 Identities=21% Similarity=0.299 Sum_probs=103.2
Q ss_pred ccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCC----------------CeEEEEE--eeCCeeEEEEEeCCCCCC
Q 012406 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA----------------TSINVVV--KDGGLKLIQVSDDGHGIR 83 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~A----------------t~I~I~i--~~~g~~~I~V~DNG~GI~ 83 (464)
+++|=+-+++.+. .++...|+|||.||.||.. ..+.|.+ +..+ ..|.|.|||.||+
T Consensus 11 ~~~Ll~lli~slY-----s~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~-~~L~I~DnGiGMt 84 (701)
T PTZ00272 11 INQLMSLIINTFY-----SNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKEN-KTLTVEDNGIGMT 84 (701)
T ss_pred HHHHHHHHHhccc-----CCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCC-CEEEEEECCCCCC
Confidence 4444445555444 4566789999999999953 2344444 3333 4699999999999
Q ss_pred cccHHHhHhhcccCCCccc----cccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEc-Cceeccccc-c
Q 012406 84 YEDLPILCERHTTSKLSKY----EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPKA-C 156 (464)
Q Consensus 84 ~edl~~l~~r~~TSK~~~~----~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~-G~~~~~~~~-~ 156 (464)
.+|+.......+.|--..| ..-......|..|.|++|...+| .|+|+||..+. .+|.+..+. |.....+.+ .
T Consensus 85 ~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~-~~~~W~s~~~g~y~i~~~~~~ 163 (701)
T PTZ00272 85 KADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSD-ESYVWESSAGGTFTITSTPES 163 (701)
T ss_pred HHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCC-ceEEEEECCCCcEEEEeCCCC
Confidence 9998764433332211111 00012457899999999999999 69999998654 577776543 344322212 1
Q ss_pred cCCCceEEEEEeeeccchhhhhcccCCchhh---hhHHHHHHHHHhh
Q 012406 157 AAVKGTQIMVENLFYNMIARRKTLQNSSDDY---TKIVDLLSRMAIH 200 (464)
Q Consensus 157 ~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~---~~I~~~l~~yAl~ 200 (464)
...+||+|++. |+....+| .+|.+++++|+-+
T Consensus 164 ~~~~GT~I~L~------------Lk~d~~ef~~~~~i~~li~kYs~f 198 (701)
T PTZ00272 164 DMKRGTRITLH------------LKEDQMEYLEPRRLKELIKKHSEF 198 (701)
T ss_pred CCCCCCEEEEE------------ECCchHHhccHHHHHHHHHHhccc
Confidence 23699999996 23222222 5799999999954
No 33
>PTZ00130 heat shock protein 90; Provisional
Probab=99.33 E-value=2.8e-11 Score=134.56 Aligned_cols=152 Identities=21% Similarity=0.297 Sum_probs=101.5
Q ss_pred CCccccCHHHHHHHHHHcchhcCC----------------CeEEEEEe--eCCeeEEEEEeCCCCCCcccHHHhHhhccc
Q 012406 35 AGEVIQRPVSAVKELVENSLDADA----------------TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTT 96 (464)
Q Consensus 35 ag~vI~~~~~avkELIeNSlDA~A----------------t~I~I~i~--~~g~~~I~V~DNG~GI~~edl~~l~~r~~T 96 (464)
++.++.++.-+|+|||.||.||.+ +.+.|+|. ..+ ..|+|.|||+||+.+|+..-...-+.
T Consensus 82 i~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~-~tLtI~DnGIGMT~eEl~~nLgTIA~ 160 (814)
T PTZ00130 82 VNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEK-NILSITDTGIGMTKEDLINNLGTIAK 160 (814)
T ss_pred hhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCC-CEEEEEECCCCCCHHHHHHHhhhhcc
Confidence 345667788899999999999975 24445443 333 36999999999999998754433333
Q ss_pred CCCccc-cccc----cccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEE-cCceeccc--ccccCCCceEEEEE
Q 012406 97 SKLSKY-EDLQ----SIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYR-DGVMESEP--KACAAVKGTQIMVE 167 (464)
Q Consensus 97 SK~~~~-~dl~----~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~-~G~~~~~~--~~~~~~~GTtV~V~ 167 (464)
|--..| +.+. ...-+|..|.|++|...|| +|+|+||..+ ..+|.+.-. +|...... +.....+||+|++.
T Consensus 161 Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~Lh 239 (814)
T PTZ00130 161 SGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIWESTADAKFTIYKDPRGSTLKRGTRISLH 239 (814)
T ss_pred cccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEEEECCCCcEEEEECCCCCCCCCCcEEEEE
Confidence 322222 1111 2457999999999999999 6999999866 346776543 34442221 11234699999997
Q ss_pred eeeccchhhhhcccCCchh---hhhHHHHHHHHHhh
Q 012406 168 NLFYNMIARRKTLQNSSDD---YTKIVDLLSRMAIH 200 (464)
Q Consensus 168 ~LF~n~PvRrk~lk~~~~e---~~~I~~~l~~yAl~ 200 (464)
|+....+ -.+|..++++|+-+
T Consensus 240 ------------Lked~~efl~~~~ik~likkYS~f 263 (814)
T PTZ00130 240 ------------LKEDATNLMNDKKLVDLISKYSQF 263 (814)
T ss_pred ------------ECCchhhhccHHHHHHHHHHhhcc
Confidence 2222222 36799999999954
No 34
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=99.26 E-value=2.3e-10 Score=125.31 Aligned_cols=175 Identities=19% Similarity=0.243 Sum_probs=128.8
Q ss_pred cccccChhHHHhhcCCccccC----------------------HHHHHHHHHHcchhc------C-CCeEEEEEeeCCee
Q 012406 21 KIHRLEESVVNRIAAGEVIQR----------------------PVSAVKELVENSLDA------D-ATSINVVVKDGGLK 71 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~----------------------~~~avkELIeNSlDA------~-At~I~I~i~~~g~~ 71 (464)
.|+.|..--.-+.+.|.+|.+ +.+++.|+|+||+|- | |+.|.|.++ +|
T Consensus 3 ~i~~L~~lE~Vr~RPgmYIGs~~~~~~~~~~~~~~~~~~~~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-dg-- 79 (602)
T PHA02569 3 EFKVLSDREHILKRPGMYIGSVAYEAHERFLFGKFTQVEYVPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-NN-- 79 (602)
T ss_pred ceeEccchHHHhcCCCceeCCCCcccccceeecccccccccccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-CC--
Confidence 578888888888888888865 346789999999993 4 899999999 66
Q ss_pred EEEEEeCCCCCCcccHH-----------H-hHhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCcc
Q 012406 72 LIQVSDDGHGIRYEDLP-----------I-LCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLH 138 (464)
Q Consensus 72 ~I~V~DNG~GI~~edl~-----------~-l~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~ 138 (464)
.|+|.|||.|||.+-.+ . ++.-|+.+|+. |- ...+-|..|.+++....+| .++|+++..+ .
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd---~~-ykvSGGlhGVG~svvNaLS~~~~V~v~~~~--~ 153 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFD---DT-NRVTGGMNGVGSSLTNFFSVLFIGETCDGK--N 153 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccC---Cc-ceeeCCcCCccceeeeccchhhheEEEcCC--E
Confidence 59999999999985321 1 23567888872 32 3356789999999888888 5888775433 3
Q ss_pred EEEEEEEcCceecc-cccccCCCceEEEEEeeeccchhhhhcccCC--c-hhhhhHHHHHHHHHhhCCCeEEEEEEC
Q 012406 139 GYRVSYRDGVMESE-PKACAAVKGTQIMVENLFYNMIARRKTLQNS--S-DDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (464)
Q Consensus 139 ~~~~~~~~G~~~~~-~~~~~~~~GTtV~V~~LF~n~PvRrk~lk~~--~-~e~~~I~~~l~~yAl~~p~v~f~l~~~ 211 (464)
.|...|.+|..... +......+||+|++. |....+ ... . ..+..|.+.++..|..+|++++.+.+.
T Consensus 154 ~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~------PD~~iF-~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~de 223 (602)
T PHA02569 154 EVTVNCSNGAENISWSTKPGKGKGTSVTFI------PDFSHF-EVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNGK 223 (602)
T ss_pred EEEEEecCCcccCCcccCCCCCCccEEEEE------ECHHHh-CCCccCccHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 58999998864322 112234689999996 655443 211 1 135778899999999999999999864
No 35
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=99.24 E-value=1.1e-11 Score=138.33 Aligned_cols=184 Identities=20% Similarity=0.300 Sum_probs=138.6
Q ss_pred CCccccccChhHHHhhcCCccccC-----HHHHHHHHHHcchhc---C-CCeEEEEEeeCCeeEEEEEeCCCCCCcccHH
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYEDLP 88 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~~-----~~~avkELIeNSlDA---~-At~I~I~i~~~g~~~I~V~DNG~GI~~edl~ 88 (464)
....|+.|..--.-|.+.|.+|.+ +.+.|.|+|+||+|- | |+.|.|+|+.+| .|+|.|||+|||.+--+
T Consensus 101 ~a~~I~vLeGLEaVRkRPGMYIGst~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg--sItV~DnGRGIPvd~h~ 178 (903)
T PTZ00109 101 DADDIVVLEGLEAVRKRPGMYIGNTDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG--SVEISDNGRGIPCDVSE 178 (903)
T ss_pred ChHhCeehhccHHHhcCCCceeCCCCCCcceEEEEEEeeccchhhccCCCcEEEEEEcCCC--eEEEEeCCccccccccc
Confidence 344699999999999999999986 578999999999993 4 899999998776 59999999999985432
Q ss_pred --------Hh-HhhcccCCCccc-------------cccc------------------------cccccCcccchhHhhh
Q 012406 89 --------IL-CERHTTSKLSKY-------------EDLQ------------------------SIKSMGFRGEALASMT 122 (464)
Q Consensus 89 --------~l-~~r~~TSK~~~~-------------~dl~------------------------~~~t~GfRGeALaSis 122 (464)
.+ ..-|+++|+..- .|.. -..+-|..|.+++...
T Consensus 179 k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVN 258 (903)
T PTZ00109 179 KTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVN 258 (903)
T ss_pred cCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeee
Confidence 22 356888887541 0100 1246789999999998
Q ss_pred hhc-eEEEEEEEcCCccEEEEEEEcCceecccc--ccc-CCCceEEEEEeeeccchhhhhcccC-Cc-------------
Q 012406 123 YVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACA-AVKGTQIMVENLFYNMIARRKTLQN-SS------------- 184 (464)
Q Consensus 123 ~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~~~--~~~-~~~GTtV~V~~LF~n~PvRrk~lk~-~~------------- 184 (464)
.+| .++|+++..+. -|...|.+|....+.+ .+. ..+||+|++. |.=.+.|.. ..
T Consensus 259 ALS~~l~VeV~RdGK--~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~------PD~~~IF~~~~~~~~~~~~~~~~~~ 330 (903)
T PTZ00109 259 ALSSFLKVDVFKGGK--IYSIELSKGKVTKPLSVFSCPLKKRGTTIHFL------PDYKHIFKTHHQHTETEEEEGCKNG 330 (903)
T ss_pred eccCeEEEEEEECCE--EEEEEeCCCcccCCccccCCcCCCCceEEEEE------eCcchhcCccccccccccccccccc
Confidence 998 59999988764 6899999997643322 233 4689999996 541122221 11
Q ss_pred hhhhhHHHHHHHHHhhCCCeEEEEEEC
Q 012406 185 DDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (464)
Q Consensus 185 ~e~~~I~~~l~~yAl~~p~v~f~l~~~ 211 (464)
..++.|.+.++.+|..+|++.|.+.+.
T Consensus 331 F~~d~L~~RLrElAfLNpGL~I~L~De 357 (903)
T PTZ00109 331 FNLDLIKNRIHELSYLNPGLTFYLVDE 357 (903)
T ss_pred cCHHHHHHHHHHHhccCCCcEEEEEec
Confidence 256789999999999999999999975
No 36
>PLN03237 DNA topoisomerase 2; Provisional
Probab=99.15 E-value=2.9e-09 Score=124.18 Aligned_cols=269 Identities=13% Similarity=0.116 Sum_probs=163.4
Q ss_pred cccccChhHHHhhcCCccccCH--------------------------HHHHHHHHHcchhcC-----CCeEEEEEe-eC
Q 012406 21 KIHRLEESVVNRIAAGEVIQRP--------------------------VSAVKELVENSLDAD-----ATSINVVVK-DG 68 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~--------------------------~~avkELIeNSlDA~-----At~I~I~i~-~~ 68 (464)
+-++|.+--.-+++.|.+|.+. ..++-|+|.||+|-. ++.|.|+|+ ++
T Consensus 31 ~Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~~~~~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~ 110 (1465)
T PLN03237 31 MYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQ 110 (1465)
T ss_pred hhhccccchHHhcCCCCEeCCCCcccceeeeeccccceeeeccccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCC
Confidence 4678888888889999988764 489999999999943 689999998 44
Q ss_pred CeeEEEEEeCCCCCCcccHH--------Hh-HhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCcc
Q 012406 69 GLKLIQVSDDGHGIRYEDLP--------IL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLH 138 (464)
Q Consensus 69 g~~~I~V~DNG~GI~~edl~--------~l-~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~ 138 (464)
| .|+|.|||.|||.+--+ .+ +..|++||+. |-....+-|..|.|.+....+| .++|+++......
T Consensus 111 g--sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFd---d~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk 185 (1465)
T PLN03237 111 N--LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYD---DNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQK 185 (1465)
T ss_pred C--EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCC---CCcceeeccccccCccccccccCeeEEEEEECCCCe
Confidence 5 59999999999986322 22 3567888874 3334577899999988888888 6999997433334
Q ss_pred EEEEEEEc--Cceeccc-ccc-cCCCceEEEEEeeeccchhhhhcccCCchhhhhHH---HHHHHHH-hhCCCeEEEEEE
Q 012406 139 GYRVSYRD--GVMESEP-KAC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIV---DLLSRMA-IHHTNVSFSCRK 210 (464)
Q Consensus 139 ~~~~~~~~--G~~~~~~-~~~-~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~---~~l~~yA-l~~p~v~f~l~~ 210 (464)
-|+..|.+ |...... ..+ ...+||+|++. |....+ ....-+++.+. ..++..| ..++++++.|.+
T Consensus 186 ~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~------PD~eiF-~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~Lnd 258 (1465)
T PLN03237 186 KYKQVFSNNMGKKSEPVITKCKKSENWTKVTFK------PDLAKF-NMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNG 258 (1465)
T ss_pred EEEEEEeCCCCccCCceeccCCCCCCceEEEEE------ECHHHh-CCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 68889987 6543221 112 23699999985 555443 22222333333 4455555 778999999986
Q ss_pred CCeeeEEEEcCCCCCHHHHHHHHhChh-hhc-ccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC-
Q 012406 211 HGAARADVHSIATSSRLDSIRTVYGVS-VAS-NLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC- 287 (464)
Q Consensus 211 ~g~~~~~l~t~~~~s~~~~i~~IfG~~-va~-~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~- 287 (464)
.... ...+.+-+....... -.+ ....+-++. .. ..|.+--..+. . ...++-|+|+-+-..
T Consensus 259 eR~~--------~~G~kdYV~~yl~~~~k~k~~~~~~i~e~--~~--~~~EVAl~~sd-~----~~~~~SFVNnI~T~~G 321 (1465)
T PLN03237 259 KRIP--------VKSFSDYVDLYLESANKSRPENLPRIYEK--VN--DRWEVCVSLSE-G----QFQQVSFVNSIATIKG 321 (1465)
T ss_pred cCCC--------CCCHHHHHHHHhhcccccCCCCCCccEec--CC--CeEEEEEEEeC-C----CceEEEEECcccCCCC
Confidence 4211 124444443222110 000 111111221 11 22444222222 1 256789999987643
Q ss_pred ----hHHHHHHHHHHHhcCC-CC-----------CCcEEEEEEEcCC
Q 012406 288 ----APLKRAVEIVYAATFP-KA-----------SKPFIYMSIVLPP 318 (464)
Q Consensus 288 ----~~L~kaI~~vy~~~lp-k~-----------~~Pf~~L~I~i~p 318 (464)
.-+..+|.+....++. |. ..=++++++.++-
T Consensus 322 GTHv~g~~~aIt~~l~~~~~kK~k~~~l~~~DIregL~a~IsvkI~n 368 (1465)
T PLN03237 322 GTHVDYVTNQIANHVMEAVNKKNKNANIKAHNVKNHLWVFVNALIDN 368 (1465)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhCcEEEEEEeCCC
Confidence 3455555555444432 11 1346778888774
No 37
>PLN03128 DNA topoisomerase 2; Provisional
Probab=99.12 E-value=4.2e-09 Score=121.89 Aligned_cols=273 Identities=14% Similarity=0.132 Sum_probs=165.0
Q ss_pred ccccChhHHHhhcCCccccC--------------------------HHHHHHHHHHcchhcC-----CCeEEEEEee-CC
Q 012406 22 IHRLEESVVNRIAAGEVIQR--------------------------PVSAVKELVENSLDAD-----ATSINVVVKD-GG 69 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~--------------------------~~~avkELIeNSlDA~-----At~I~I~i~~-~g 69 (464)
-++|.+--.-+.+.|.+|.+ +..++-|+|.||+|-. ++.|.|+|+. +|
T Consensus 7 yqk~s~lEhV~~RP~mYIGS~~~~~~~~wv~~~~~~~~~~v~~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg 86 (1135)
T PLN03128 7 YQKKTQLEHILLRPDTYIGSTEKHTQTLWVYEGGEMVNREVTYVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN 86 (1135)
T ss_pred hhhhcchhHHhcCCCCeeCCCCCccceeeEecccceeeeccccchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC
Confidence 45555555566666666654 5679999999999943 5899999987 56
Q ss_pred eeEEEEEeCCCCCCcccHH--------Hh-HhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccE
Q 012406 70 LKLIQVSDDGHGIRYEDLP--------IL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHG 139 (464)
Q Consensus 70 ~~~I~V~DNG~GI~~edl~--------~l-~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~ 139 (464)
.|+|.|||.|||.+-.+ .+ +.-|++||+. |-....+-|..|.+.+....+| .++|+++......-
T Consensus 87 --sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFd---d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~ 161 (1135)
T PLN03128 87 --TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFD---DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKK 161 (1135)
T ss_pred --eEEEEecCccccCCCCCCCCCccceEEEEeeccccccC---CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeE
Confidence 59999999999976322 22 3568888864 4334567889999988888888 69999985444456
Q ss_pred EEEEEEcCceecc-c--cccc-CCCceEEEEEeeeccchhhhhc-ccCCchh-hhhHHHHHHHHH-hhCCCeEEEEEECC
Q 012406 140 YRVSYRDGVMESE-P--KACA-AVKGTQIMVENLFYNMIARRKT-LQNSSDD-YTKIVDLLSRMA-IHHTNVSFSCRKHG 212 (464)
Q Consensus 140 ~~~~~~~G~~~~~-~--~~~~-~~~GTtV~V~~LF~n~PvRrk~-lk~~~~e-~~~I~~~l~~yA-l~~p~v~f~l~~~g 212 (464)
|+..|.+|..... + ..+. ..+||+|++. |.-..+ ......+ +..+...++..| ..+|++++.|.+..
T Consensus 162 y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~------PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder 235 (1135)
T PLN03128 162 YKQVFTNNMSVKSEPKITSCKASENWTKITFK------PDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKK 235 (1135)
T ss_pred EEEEeCCCcccCCCceeccCCCCCCceEEEEE------ECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 8999998854221 1 1222 3589999996 554443 1111222 334566666667 77899999998642
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhChhhhcccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC-----
Q 012406 213 AARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC----- 287 (464)
Q Consensus 213 ~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~----- 287 (464)
. ....+.+-+....+..-......+-++. .. ..+.+.--.+.. ...++-|+|+-+-..
T Consensus 236 ~--------~~~G~~dyv~~~~~~~~~~~~~~i~~~~--~~--~~~eva~~~s~~-----~~~~~SFVN~I~T~~GGTHv 298 (1135)
T PLN03128 236 L--------PVKSFQDYVGLYLGPNSREDPLPRIYEK--VN--DRWEVCVSLSDG-----SFQQVSFVNSIATIKGGTHV 298 (1135)
T ss_pred C--------CCCCHHHHHHHHhcCCCCCCCCCeEEEe--cC--ceEEEEEEEcCC-----CceEEEEECcEecCCCCchH
Confidence 1 1134555544322221000011222222 11 223333223321 245789999987543
Q ss_pred hHHHHHHHHHHHhcCCCC-------------CCcEEEEEEEcCCCcee
Q 012406 288 APLKRAVEIVYAATFPKA-------------SKPFIYMSIVLPPEHVD 322 (464)
Q Consensus 288 ~~L~kaI~~vy~~~lpk~-------------~~Pf~~L~I~i~p~~vD 322 (464)
..+.++|.+....+..+. ..=++++++.++--..|
T Consensus 299 ~g~~~~i~~~i~~~~~kk~K~~~~l~~~diregL~~vIs~ki~nP~Fe 346 (1135)
T PLN03128 299 DYVADQIVKHIQEKVKKKNKNATHVKPFQIKNHLWVFVNCLIENPTFD 346 (1135)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCCHHHHHhCcEEEEEEecCCCccc
Confidence 356667666655543111 13467788887743333
No 38
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=99.11 E-value=5.9e-10 Score=130.16 Aligned_cols=179 Identities=16% Similarity=0.162 Sum_probs=132.2
Q ss_pred ccccccChhHHHhhcCCccccC----------------------------HHHHHHHHHHcchhc-------C-CCeEEE
Q 012406 20 PKIHRLEESVVNRIAAGEVIQR----------------------------PVSAVKELVENSLDA-------D-ATSINV 63 (464)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vI~~----------------------------~~~avkELIeNSlDA-------~-At~I~I 63 (464)
..|++|.+--.-+++.|.+|.+ +..++-|+|.||+|- | ++.|.|
T Consensus 8 ~~yq~L~~lEhVr~RP~mYIGS~~~~~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V 87 (1388)
T PTZ00108 8 ERYQKKTQIEHILLRPDTYIGSIETQTEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHRMTYIKV 87 (1388)
T ss_pred HhhhcccchhHHhcCCCceeCCCCccccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCCccEEEE
Confidence 3588888888888888888764 468999999999994 3 789999
Q ss_pred EEeeC-CeeEEEEEeCCCCCCcccHH--------Hh-HhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEE
Q 012406 64 VVKDG-GLKLIQVSDDGHGIRYEDLP--------IL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTI 132 (464)
Q Consensus 64 ~i~~~-g~~~I~V~DNG~GI~~edl~--------~l-~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Sr 132 (464)
+|+.+ | .|+|.|||.|||.+--+ .+ +.-|++||+. |-....+-|..|.|.+....+| .++|+++
T Consensus 88 ~i~~d~g--~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfd---d~~yKvSGGlhGVGasvvNalS~~f~Vev~ 162 (1388)
T PTZ00108 88 TIDEENG--EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYD---DTEKRVTGGRNGFGAKLTNIFSTKFTVECV 162 (1388)
T ss_pred EEeccCC--eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCC---CCceeeecccccCCccccccccceEEEEEE
Confidence 99976 5 59999999999986322 22 4567888864 4344577899999988888888 6999999
Q ss_pred EcCCccEEEEEEEcCc-eecccc--cccC-CCceEEEEEeeeccchhhhhcccCCchhhhh---HHHHHHHHHhhCCCeE
Q 012406 133 TKGHLHGYRVSYRDGV-MESEPK--ACAA-VKGTQIMVENLFYNMIARRKTLQNSSDDYTK---IVDLLSRMAIHHTNVS 205 (464)
Q Consensus 133 t~~~~~~~~~~~~~G~-~~~~~~--~~~~-~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~---I~~~l~~yAl~~p~v~ 205 (464)
......-|...|.+|. ....+. .+.. .+||+|++. |....+ ....-.++. |.+.++.+|..+|++.
T Consensus 163 r~~~gk~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~------PD~~iF-~~~~fd~d~~~ll~~Rl~dlA~ln~GLk 235 (1388)
T PTZ00108 163 DSKSGKKFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFY------PDYAKF-GMTEFDDDMLRLLKKRVYDLAGCFGKLK 235 (1388)
T ss_pred ECCCCCEEEEEecCCCcCCCCCccCCCCCCCCceEEEEE------eCHHHc-CCCccChHHHHHHHHHHHHHhcCCCCcE
Confidence 8744457999999883 111222 2223 689999996 555443 222223333 7789999999999999
Q ss_pred EEEEE
Q 012406 206 FSCRK 210 (464)
Q Consensus 206 f~l~~ 210 (464)
+.|.+
T Consensus 236 I~lnd 240 (1388)
T PTZ00108 236 VYLNG 240 (1388)
T ss_pred EEEeC
Confidence 99875
No 39
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.65 E-value=9.9e-08 Score=81.27 Aligned_cols=78 Identities=27% Similarity=0.360 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHcchhcCCC--eEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch
Q 012406 41 RPVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At--~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
.+..++.||++||+|+... .|.|.+.. ++...|.|.|||.||++++++.++.++.+++.. ....+-.|.+
T Consensus 5 ~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~-------~~~~~g~GlG 77 (111)
T PF02518_consen 5 RLRQILSELLDNAIKHSPEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKS-------ETSISGHGLG 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSS-------SGGSSSSSHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCeEEEEEEeccccccccccccchhhccccccc-------ccccCCCChH
Confidence 4678999999999999766 89999875 456689999999999999999999998887751 1223447888
Q ss_pred hHhhhhhc
Q 012406 118 LASMTYVG 125 (464)
Q Consensus 118 LaSis~vs 125 (464)
|+....++
T Consensus 78 L~~~~~~~ 85 (111)
T PF02518_consen 78 LYIVKQIA 85 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766665
No 40
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.6e-07 Score=97.04 Aligned_cols=240 Identities=18% Similarity=0.213 Sum_probs=143.4
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcC--------------CCeEEEEEee-CCeeEEEEEeCCCCCCcc
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD--------------ATSINVVVKD-GGLKLIQVSDDGHGIRYE 85 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~--------------At~I~I~i~~-~g~~~I~V~DNG~GI~~e 85 (464)
.|++|.+-+++.+.|+ -.-.++|||.||-||- .....|.+.. .....++|.|+|.||+++
T Consensus 42 E~~qLm~lii~s~YS~-----kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~ 116 (656)
T KOG0019|consen 42 ETNQLMDIVAKSLYSH-----KEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKE 116 (656)
T ss_pred hHHhHHHHHHHHhhcc-----hHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHH
Confidence 5899999999999987 3457999999999983 1234444432 123479999999999999
Q ss_pred cHHHhHhhc--ccCCCccc-ccc----ccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCc-eecccccc
Q 012406 86 DLPILCERH--TTSKLSKY-EDL----QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPKAC 156 (464)
Q Consensus 86 dl~~l~~r~--~TSK~~~~-~dl----~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~-~~~~~~~~ 156 (464)
||..-...- .+|| .| +.+ ......|..|.+++|.--++ +|.|+||..++. +|.+....|. ......+.
T Consensus 117 dLvnnLGTIAkSGtK--~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~gs~~v~~~~~ 193 (656)
T KOG0019|consen 117 DLVNNLGTIAKSGSK--AFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGRGSYEIAEASG 193 (656)
T ss_pred HHHhhhhhhhhcccH--HHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCCCceEEeeccC
Confidence 987432222 2233 12 112 23567899999999999999 699999998765 7777765443 32211122
Q ss_pred cCCCceEEEEEeeeccchhhhhcccCCc---hhhhhHHHHHHHHHhh--CCCeEEEEEECCeeeEEEEcCCCCCHHHHHH
Q 012406 157 AAVKGTQIMVENLFYNMIARRKTLQNSS---DDYTKIVDLLSRMAIH--HTNVSFSCRKHGAARADVHSIATSSRLDSIR 231 (464)
Q Consensus 157 ~~~~GTtV~V~~LF~n~PvRrk~lk~~~---~e~~~I~~~l~~yAl~--~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~ 231 (464)
..+||.|+.. ++... .+..+|.+++.+|+.. +| +-+...+.++.++.|...+..-..+...
T Consensus 194 -~~rGTki~l~------------lKe~~~ey~ee~rikeiVKK~S~Fv~yP-I~l~~ek~N~tKpiW~rnp~dit~eey~ 259 (656)
T KOG0019|consen 194 -LRTGTKIVIH------------LKEGDCEFLEEKRIKEVVKKYSNFVSYP-IYLNGERVNNLKAIWTMNPKEVNEEEHE 259 (656)
T ss_pred -ccccceEEee------------ehhhhhhhccHhHHHHHHhhcccccccc-chhhhhhhhccCcccccCchhhhHHHHH
Confidence 6789999985 22211 2447899999999853 33 2222222344455555544444334433
Q ss_pred HHhChhhhccc------EEeeeeccCCCCCceeEEEEEEeCCCC------CCCCceEEEEEcCcccCCh
Q 012406 232 TVYGVSVASNL------VQLEASEYNDSSSFVFKMDGYVSNSNY------VAKKTTMVLFVNDRLVECA 288 (464)
Q Consensus 232 ~IfG~~va~~L------~~i~~~~~~~~~~~~~~i~G~is~~~~------~~kk~~~~lFIN~R~V~~~ 288 (464)
.-|- .+.+.. .+++.+ .. ..|.+-+|+..... ..|+..+-+|+-.-+|+..
T Consensus 260 eFYk-sl~ndw~d~lav~hf~~e---g~--lefrail~vP~rap~~lF~~~kk~n~i~Ly~rrv~I~d~ 322 (656)
T KOG0019|consen 260 EFYK-SVSGDWDDPLYVLHFKTD---GP--LSIRSIFYIPKRAPNSMFDMRKKKNGIKLYARRVLITDD 322 (656)
T ss_pred HHHH-hhcccccchhhHhhhccc---cc--eEEEEEEeccccCcchhhhhhhccCceEEEEEEEecCch
Confidence 3331 112211 112221 12 45777777754221 1234446677766666554
No 41
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.6e-07 Score=93.64 Aligned_cols=144 Identities=23% Similarity=0.323 Sum_probs=95.6
Q ss_pred HHHHHHHHHcchhcCC----------------CeEEEEEeeC-CeeEEEEEeCCCCCCcccHHH-hHh--hcccC----C
Q 012406 43 VSAVKELVENSLDADA----------------TSINVVVKDG-GLKLIQVSDDGHGIRYEDLPI-LCE--RHTTS----K 98 (464)
Q Consensus 43 ~~avkELIeNSlDA~A----------------t~I~I~i~~~-g~~~I~V~DNG~GI~~edl~~-l~~--r~~TS----K 98 (464)
.-.++|||.||-||=- ...+|.|+.+ ..+.+.|.|.|.||+.+||-. ++. +-.|| |
T Consensus 97 eIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~K 176 (785)
T KOG0020|consen 97 EIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEK 176 (785)
T ss_pred HHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHH
Confidence 3579999999999831 2455555432 245799999999999999853 331 22233 5
Q ss_pred Ccccccccc--ccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCce--ecccccccCCCceEEEEEeeeccc
Q 012406 99 LSKYEDLQS--IKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM--ESEPKACAAVKGTQIMVENLFYNM 173 (464)
Q Consensus 99 ~~~~~dl~~--~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~--~~~~~~~~~~~GTtV~V~~LF~n~ 173 (464)
+.+..++.+ ..-.|..|.+++|..-|+ .|.|+||+.++. -|-+.-+.... ..+|....-.+||+|++.
T Consensus 177 m~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~-QyiWESdan~FsvseDprg~tL~RGt~ItL~------ 249 (785)
T KOG0020|consen 177 MQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDS-QYIWESDANSFSVSEDPRGNTLGRGTEITLY------ 249 (785)
T ss_pred hhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCcc-ceeeeccCcceeeecCCCCCcccCccEEEEE------
Confidence 544444322 256788899999999999 699999997753 23333333333 334555566899999985
Q ss_pred hhhhhcccCCch---hhhhHHHHHHHHHh
Q 012406 174 IARRKTLQNSSD---DYTKIVDLLSRMAI 199 (464)
Q Consensus 174 PvRrk~lk~~~~---e~~~I~~~l~~yAl 199 (464)
|+..+. |.+.+++++.+|+-
T Consensus 250 ------LkeEA~dyLE~dtlkeLvkkYSq 272 (785)
T KOG0020|consen 250 ------LKEEAGDYLEEDTLKELVKKYSQ 272 (785)
T ss_pred ------ehhhhhhhcchhHHHHHHHHHHH
Confidence 333222 45789999999984
No 42
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=98.34 E-value=1.1e-06 Score=91.90 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcchhcCCC------eEEEEEe-eCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcc
Q 012406 42 PVSAVKELVENSLDADAT------SINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At------~I~I~i~-~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfR 114 (464)
+.+++.+|+.||+++.+. .|.|.+. .++...|.|.|||.||+++++..+|++|.|+|... ++-.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---------~~G~ 458 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---------RKHI 458 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---------CCCC
Confidence 678999999999998533 3666664 34455799999999999999999999999988542 2346
Q ss_pred cchhHhhhhh
Q 012406 115 GEALASMTYV 124 (464)
Q Consensus 115 GeALaSis~v 124 (464)
|.||+-...+
T Consensus 459 GlGL~i~~~i 468 (494)
T TIGR02938 459 GMGLSVAQEI 468 (494)
T ss_pred cccHHHHHHH
Confidence 7788765544
No 43
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=98.26 E-value=2.2e-06 Score=92.33 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHcchhc------CCCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCc
Q 012406 41 RPVSAVKELVENSLDA------DATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGF 113 (464)
Q Consensus 41 ~~~~avkELIeNSlDA------~At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~Gf 113 (464)
.+.+++.+|++||++| +...|.|.+.. ++.-.|.|.|||.||++++.+.+|++|+++|-.. .|-
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~---------~~g 502 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE---------PGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC---------CCC
Confidence 3567899999999998 34678888764 3445699999999999999999999999887431 345
Q ss_pred ccchhHhhhhhc
Q 012406 114 RGEALASMTYVG 125 (464)
Q Consensus 114 RGeALaSis~vs 125 (464)
+|.+|+-+.++.
T Consensus 503 ~GlGL~ivk~iv 514 (545)
T PRK15053 503 HGIGLYLIASYV 514 (545)
T ss_pred ceeCHHHHHHHH
Confidence 788898776654
No 44
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=98.24 E-value=2e-06 Score=91.93 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=65.9
Q ss_pred cCCccccCHHHHHHHHHHcchhcCC-----CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCcccccccc
Q 012406 34 AAGEVIQRPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQS 107 (464)
Q Consensus 34 ~ag~vI~~~~~avkELIeNSlDA~A-----t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~ 107 (464)
.++...+....+|..||+||+||-+ ..|.+.+.+ ++.--|.|.|||+||+++..+.+|+++.++|-.
T Consensus 420 p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~------- 492 (537)
T COG3290 420 PSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT------- 492 (537)
T ss_pred CCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC-------
Confidence 3445556788999999999999976 689999975 445579999999999999999999999999852
Q ss_pred ccccCcccchhHhhhhh
Q 012406 108 IKSMGFRGEALASMTYV 124 (464)
Q Consensus 108 ~~t~GfRGeALaSis~v 124 (464)
|-||.+|+-+...
T Consensus 493 ----~~rGiGL~Lvkq~ 505 (537)
T COG3290 493 ----GGRGIGLYLVKQL 505 (537)
T ss_pred ----CCCchhHHHHHHH
Confidence 4588999877543
No 45
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=98.17 E-value=4.7e-06 Score=87.52 Aligned_cols=79 Identities=28% Similarity=0.289 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHcchhcCC--CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch
Q 012406 41 RPVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~A--t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
.+.+++.+||+||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|++|++.+-..- ...|-.|.+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~------~~~~G~GLG 390 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARS------RQTGGSGLG 390 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCC------CCCCCCchH
Confidence 357899999999999964 357776653 33446999999999999999999999987653210 122446788
Q ss_pred hHhhhhhc
Q 012406 118 LASMTYVG 125 (464)
Q Consensus 118 LaSis~vs 125 (464)
|+-...+.
T Consensus 391 L~ivk~iv 398 (430)
T PRK11006 391 LAIVKHAL 398 (430)
T ss_pred HHHHHHHH
Confidence 87655543
No 46
>PRK10364 sensor protein ZraS; Provisional
Probab=98.16 E-value=5.3e-06 Score=87.75 Aligned_cols=73 Identities=26% Similarity=0.272 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHcchhcC--CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch
Q 012406 41 RPVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~--At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
.+..++..||+||++|. ...|.|.+.. ++.-.|.|.|||+||++++++.+|++|.++|- +-+|.+
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~------------~g~GlG 415 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA------------EGTGLG 415 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCC------------CCCccc
Confidence 35688999999999984 4578887764 33346999999999999999999999988762 125788
Q ss_pred hHhhhhhc
Q 012406 118 LASMTYVG 125 (464)
Q Consensus 118 LaSis~vs 125 (464)
|+-+..+.
T Consensus 416 L~iv~~~v 423 (457)
T PRK10364 416 LAVVHNIV 423 (457)
T ss_pred HHHHHHHH
Confidence 88766544
No 47
>PRK10604 sensor protein RstB; Provisional
Probab=98.16 E-value=5.6e-06 Score=87.35 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcchhcCCCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhHh
Q 012406 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALAS 120 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALaS 120 (464)
+..++.+||+||+.++...|.|.+.. ++.-.|.|.|||.||++++++.+|++|++..... ...+ |-.|.||+-
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~-----~~~~-~g~GLGL~i 393 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPSR-----DRAT-GGCGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCC-----CCCC-CCccchHHH
Confidence 56789999999999998889888864 3344699999999999999999999998653211 1122 334788876
Q ss_pred hhhhc
Q 012406 121 MTYVG 125 (464)
Q Consensus 121 is~vs 125 (464)
...+.
T Consensus 394 vk~i~ 398 (433)
T PRK10604 394 VHSIA 398 (433)
T ss_pred HHHHH
Confidence 55544
No 48
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=98.13 E-value=2.5e-06 Score=91.73 Aligned_cols=60 Identities=35% Similarity=0.499 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHHcchhcCC----CeEEEEEe-eCCeeEEEEEeCCCCCCcccHHHhHhhcccCCC
Q 012406 40 QRPVSAVKELVENSLDADA----TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (464)
Q Consensus 40 ~~~~~avkELIeNSlDA~A----t~I~I~i~-~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~ 99 (464)
.++.+++-.||.||+||=+ ..|+|... +++.-.|.|.|||+||+++-++.+|++|.|+|-
T Consensus 496 iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~ 560 (603)
T COG4191 496 IRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP 560 (603)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccccCc
Confidence 3789999999999999954 47888875 455567999999999999999999999999994
No 49
>PRK09303 adaptive-response sensory kinase; Validated
Probab=98.08 E-value=8e-06 Score=84.91 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEe--eCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~--~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
+..++..||.||+++.. ..|.|.+. .++.-.|.|.|||.||++++++.+|++|.+.+-.. ..+-.|.|
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~~~--------~~~G~GLG 344 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRDE--------GTEGYGIG 344 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCCCC--------CCCccccc
Confidence 56899999999999875 45666653 34444699999999999999999999998766421 12336777
Q ss_pred hHhhhhh
Q 012406 118 LASMTYV 124 (464)
Q Consensus 118 LaSis~v 124 (464)
|+-...+
T Consensus 345 L~i~~~i 351 (380)
T PRK09303 345 LSVCRRI 351 (380)
T ss_pred HHHHHHH
Confidence 7755443
No 50
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=98.06 E-value=1.2e-05 Score=84.55 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcchhcCCC--eEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At--~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
+.+++.+||+||+.+... .|.|.+.. ++.-.|.|.|||.||++++++.++++|++.+-.. ....|-.|.+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~------~~~~~g~GlGL 426 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSR------NRASGGSGLGL 426 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCc------CCCCCCCcHHH
Confidence 567899999999998643 67777754 3334699999999999999999999998765321 12234568888
Q ss_pred Hhhhhhc
Q 012406 119 ASMTYVG 125 (464)
Q Consensus 119 aSis~vs 125 (464)
+-+..+.
T Consensus 427 ~iv~~i~ 433 (466)
T PRK10549 427 AICLNIV 433 (466)
T ss_pred HHHHHHH
Confidence 7655544
No 51
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=98.00 E-value=3.1e-05 Score=80.69 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEeeC-CeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVKDG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~~~-g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
+..++.+||+||++++. ..|.|.+... +.-.|+|.|||.||+++++..++++|++++..... ..+-.|.||
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~------~~~g~GlGL 427 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSN------SGEGTGLGL 427 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCC------CCCCccccH
Confidence 56789999999999873 4788888653 33469999999999999999999999988754311 123467888
Q ss_pred Hhhhhhc
Q 012406 119 ASMTYVG 125 (464)
Q Consensus 119 aSis~vs 125 (464)
+-+..+.
T Consensus 428 ~i~~~~~ 434 (457)
T TIGR01386 428 AIVRSIM 434 (457)
T ss_pred HHHHHHH
Confidence 8765543
No 52
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.97 E-value=2.2e-05 Score=82.14 Aligned_cols=76 Identities=25% Similarity=0.255 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcchhcCCCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhHh
Q 012406 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALAS 120 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALaS 120 (464)
+..++.+||+||+.++...|.|.+.. ++.-.|+|.|||.||++++++.++++|++.+-..- ...+-.|.+|+-
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~------~~~~g~GlGL~i 427 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARD------RESGGTGLGLAI 427 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccC------CCCCCcchhHHH
Confidence 45789999999999998888888763 44446999999999999999999999886442110 112334777775
Q ss_pred hhh
Q 012406 121 MTY 123 (464)
Q Consensus 121 is~ 123 (464)
+..
T Consensus 428 v~~ 430 (461)
T PRK09470 428 VEN 430 (461)
T ss_pred HHH
Confidence 544
No 53
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.96 E-value=2.5e-05 Score=81.71 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
+..++.+||+||+.++. ..|.|++.. ++.-.|.|.|||.||+++++..++++|.+.+... ...+-.|.||
T Consensus 369 l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~-------~~~~~~GlGL 441 (475)
T PRK11100 369 LRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPA-------NGRKSTGLGL 441 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCC-------CCCCCcchhH
Confidence 66889999999999864 578888863 3344699999999999999999999998765321 1223467788
Q ss_pred Hhhhhhc
Q 012406 119 ASMTYVG 125 (464)
Q Consensus 119 aSis~vs 125 (464)
+.+..+.
T Consensus 442 ~i~~~~~ 448 (475)
T PRK11100 442 AFVREVA 448 (475)
T ss_pred HHHHHHH
Confidence 7765543
No 54
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.93 E-value=2.6e-05 Score=83.93 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcchhcCCCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhHh
Q 012406 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALAS 120 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALaS 120 (464)
+..++..||+||+++....|.|.+.. ++.-.|.|.|||.||++++++.+|++|.+.+-. -+-.|.||+-
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~----------~~G~GLGL~I 448 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRADTL----------RPGQGLGLSV 448 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC----------CCCcchhHHH
Confidence 46799999999999998888888764 444469999999999999999999998754321 1124777876
Q ss_pred hhhhc
Q 012406 121 MTYVG 125 (464)
Q Consensus 121 is~vs 125 (464)
...+.
T Consensus 449 vk~iv 453 (485)
T PRK10815 449 AREIT 453 (485)
T ss_pred HHHHH
Confidence 55543
No 55
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.91 E-value=5.2e-05 Score=81.06 Aligned_cols=72 Identities=28% Similarity=0.383 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHcchhcC----CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCccc
Q 012406 41 RPVSAVKELVENSLDAD----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRG 115 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~----At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRG 115 (464)
.+..++.+|++||++|. ...|.|++.. ++.-.|.|.|||.||++++++.+|++|.++|-. -.|
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~------------g~G 500 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGS------------NRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCC------------CCc
Confidence 46789999999999984 3468887764 444479999999999999999999999887631 257
Q ss_pred chhHhhhhh
Q 012406 116 EALASMTYV 124 (464)
Q Consensus 116 eALaSis~v 124 (464)
.+|+.+..+
T Consensus 501 lGL~iv~~i 509 (542)
T PRK11086 501 VGLYLVKQS 509 (542)
T ss_pred CcHHHHHHH
Confidence 778766554
No 56
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.89 E-value=6.5e-05 Score=60.36 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=52.8
Q ss_pred HHHHHHHHHcchhcCC---CeEEEEEeeC-CeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 43 VSAVKELVENSLDADA---TSINVVVKDG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 43 ~~avkELIeNSlDA~A---t~I~I~i~~~-g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
..++.|||+||+++++ ..|.|.+..+ +.-.|.|.|+|.||++++++.++.++... .. ....+..|.+|
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--~~------~~~~~~~g~gl 73 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--SR------SRKGGGTGLGL 73 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC--CC------CCCCCccccCH
Confidence 5789999999999987 6677777643 34469999999999999998887765111 11 12234456677
Q ss_pred Hhhhhhc
Q 012406 119 ASMTYVG 125 (464)
Q Consensus 119 aSis~vs 125 (464)
+.+..++
T Consensus 74 ~~~~~~~ 80 (103)
T cd00075 74 SIVKKLV 80 (103)
T ss_pred HHHHHHH
Confidence 7665554
No 57
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.87 E-value=3e-05 Score=86.66 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEee-CCeeEEEEEeCCCCCCccc-HHHhHhhcccCCCccccccccccccCcccch
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYED-LPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~~-~g~~~I~V~DNG~GI~~ed-l~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
..+++.+||+||+++.. ..|.|.+.. ++.-.|.|.|||+||++++ .+.+|++|.++|- +-.|.+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------------~G~GLG 647 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------------AGMGIG 647 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------------CCcchh
Confidence 56799999999999964 468888864 4445799999999999999 8899999988762 235777
Q ss_pred hHhhhhh
Q 012406 118 LASMTYV 124 (464)
Q Consensus 118 LaSis~v 124 (464)
|+.+..+
T Consensus 648 L~i~~~i 654 (679)
T TIGR02916 648 VYECRQY 654 (679)
T ss_pred HHHHHHH
Confidence 8766544
No 58
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.87 E-value=4.1e-05 Score=79.85 Aligned_cols=76 Identities=28% Similarity=0.245 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcchhcCCCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhHh
Q 012406 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALAS 120 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALaS 120 (464)
+..++.+||+||+.++...|.|.+.. ++.-.|+|.|||.||++++++.++++|+..... ..-+-.|.+|+-
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~--------~~~~g~GlGL~i 403 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSA--------RGSSGTGLGLAI 403 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccCCCC--------CCCCCeehhHHH
Confidence 45689999999999999999998864 334469999999999999999999998753211 011335677776
Q ss_pred hhhhc
Q 012406 121 MTYVG 125 (464)
Q Consensus 121 is~vs 125 (464)
+..+.
T Consensus 404 v~~i~ 408 (435)
T PRK09467 404 VKRIV 408 (435)
T ss_pred HHHHH
Confidence 55544
No 59
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.86 E-value=3.8e-05 Score=87.96 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcchhcC-CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhH
Q 012406 42 PVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALA 119 (464)
Q Consensus 42 ~~~avkELIeNSlDA~-At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALa 119 (464)
+..++..||+||+++. ...|.|.+.. ++.-.|.|.|||.||++++++.+|++|.+.+-. .|-.|.||+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL~ 583 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH----------SQGTGLGLT 583 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC----------CCCCchHHH
Confidence 6689999999999985 3468888764 334469999999999999999999999876521 234577776
Q ss_pred hhhhh
Q 012406 120 SMTYV 124 (464)
Q Consensus 120 Sis~v 124 (464)
-...+
T Consensus 584 i~~~~ 588 (921)
T PRK15347 584 IASSL 588 (921)
T ss_pred HHHHH
Confidence 54443
No 60
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.84 E-value=7.7e-05 Score=75.98 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcchhcC--CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~--At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
+..++.+||+||+.+. .+.|.|.+.. ++.-.|.|.|||.||++++++.++.+|...+. ..+-.|.||
T Consensus 248 l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----------~~~g~GlGL 317 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----------RYGGIGLGL 317 (356)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----------CCCCcCHHH
Confidence 4578999999999986 4568888753 33446999999999999999999999874321 123357778
Q ss_pred Hhhhhhc
Q 012406 119 ASMTYVG 125 (464)
Q Consensus 119 aSis~vs 125 (464)
+-...+.
T Consensus 318 ~i~~~i~ 324 (356)
T PRK10755 318 SIVSRIT 324 (356)
T ss_pred HHHHHHH
Confidence 7655443
No 61
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.77 E-value=6.4e-05 Score=85.04 Aligned_cols=88 Identities=25% Similarity=0.265 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHcchhcCC-CeEEEEEee--CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch
Q 012406 41 RPVSAVKELVENSLDADA-TSINVVVKD--GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~A-t~I~I~i~~--~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
.+.+++.+||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|++|++.|-.. .....|-.|.+
T Consensus 398 ~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~-----~~~~~~GtGLG 472 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSH-----GGKPATGTGIG 472 (779)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCC-----CCCCCCCcchH
Confidence 366899999999999863 457776653 3444699999999999999999999999886221 11224556777
Q ss_pred hHhhhhh-----ceEEEEEEE
Q 012406 118 LASMTYV-----GHVTVTTIT 133 (464)
Q Consensus 118 LaSis~v-----s~l~I~Srt 133 (464)
|+-.-.+ +.+++.|..
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 7655433 467777654
No 62
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.73 E-value=0.00026 Score=81.07 Aligned_cols=90 Identities=26% Similarity=0.342 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcchhcC--CCeEEEEEee----------------CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCcccc
Q 012406 42 PVSAVKELVENSLDAD--ATSINVVVKD----------------GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYE 103 (464)
Q Consensus 42 ~~~avkELIeNSlDA~--At~I~I~i~~----------------~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~ 103 (464)
+.+++.+||.||+++. ...|.|.+.. ++.-.|.|.|||.||++++++.+|++|.++|-
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 6689999999999974 3567777653 33446999999999999999999999998763
Q ss_pred ccccccccCcccchhHhhhhh-----ceEEEEEEEcCCccEEEEEE
Q 012406 104 DLQSIKSMGFRGEALASMTYV-----GHVTVTTITKGHLHGYRVSY 144 (464)
Q Consensus 104 dl~~~~t~GfRGeALaSis~v-----s~l~I~Srt~~~~~~~~~~~ 144 (464)
+-.|.+|+-...+ +.+.|.|... ....+.+.+
T Consensus 637 --------~G~GLGL~i~~~iv~~~gG~i~v~s~~g-~Gt~f~i~L 673 (828)
T PRK13837 637 --------GGTGLGLATVHGIVSAHAGYIDVQSTVG-RGTRFDVYL 673 (828)
T ss_pred --------CCCcchHHHHHHHHHHCCCEEEEEecCC-CeEEEEEEE
Confidence 3356777654333 4688877643 223344444
No 63
>PRK10337 sensor protein QseC; Provisional
Probab=97.73 E-value=7.1e-05 Score=78.49 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcchhcCCC--eEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhH
Q 012406 42 PVSAVKELVENSLDADAT--SINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALA 119 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At--~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALa 119 (464)
+..++.+||+||++++.. .|.|.+... .|.|.|||.||++++++.++++|++.+-. .-+-.|.||+
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~~~---~i~i~D~G~Gi~~~~~~~if~~f~~~~~~---------~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLNAR---NFTVRDNGPGVTPEALARIGERFYRPPGQ---------EATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEee---EEEEEECCCCCCHHHHHHhcccccCCCCC---------CCCccchHHH
Confidence 456899999999998764 466655543 59999999999999999999999865321 1123567777
Q ss_pred hhhhhc
Q 012406 120 SMTYVG 125 (464)
Q Consensus 120 Sis~vs 125 (464)
-...+.
T Consensus 421 iv~~i~ 426 (449)
T PRK10337 421 IVRRIA 426 (449)
T ss_pred HHHHHH
Confidence 554443
No 64
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.68 E-value=7e-05 Score=72.70 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHcchhcC-CCeEEEEEeeCC-eeEEEEEeCCCCCCcccHHHhHhhcccCCCc
Q 012406 41 RPVSAVKELVENSLDAD-ATSINVVVKDGG-LKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~-At~I~I~i~~~g-~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~ 100 (464)
.+..++..||.||++|. ...|.|.+...+ .-.++|.|||.||++++++.++++|.|+|..
T Consensus 228 ~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~ 289 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTPGGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKS 289 (336)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCC
Confidence 36789999999999999 599999997543 3469999999999999999999999998853
No 65
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.68 E-value=0.00029 Score=57.51 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHcchhcCCC--eEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch
Q 012406 41 RPVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At--~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
.+..++.||++|++++..+ .|.|.+.. ++...|.|.|||.||+.+++..++.++..++... ...+-.|.+
T Consensus 5 ~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~g 77 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRS-------RKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCCC-------CCCCccccc
Confidence 3577899999999999886 78888764 3455799999999999999998887766554211 112335666
Q ss_pred hHhhhhhc
Q 012406 118 LASMTYVG 125 (464)
Q Consensus 118 LaSis~vs 125 (464)
|+.+..++
T Consensus 78 l~~~~~~~ 85 (111)
T smart00387 78 LSIVKKLV 85 (111)
T ss_pred HHHHHHHH
Confidence 77665544
No 66
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.66 E-value=0.00013 Score=72.07 Aligned_cols=77 Identities=34% Similarity=0.382 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
+..++.+||.||++++. ..|.|.+.. ++.-.|.|.|||.||+++.++.+|.+|.+.+...- ...+-.|.+|
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~------~~~~g~glGL 303 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRS------RDTGGTGLGL 303 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecCcccc------cCCCCCcccH
Confidence 56799999999999864 457776653 23346999999999999999999999875432110 1123357777
Q ss_pred Hhhhhh
Q 012406 119 ASMTYV 124 (464)
Q Consensus 119 aSis~v 124 (464)
+.+..+
T Consensus 304 ~~~~~~ 309 (333)
T TIGR02966 304 AIVKHV 309 (333)
T ss_pred HHHHHH
Confidence 765444
No 67
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.64 E-value=9.2e-05 Score=79.22 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcchhcCCC--eEEEEEee--CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch
Q 012406 42 PVSAVKELVENSLDADAT--SINVVVKD--GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At--~I~I~i~~--~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
+..++.+|+.||+.+... .|.|.+.. ++.-.|.|.|||+||+++++..++++|.++|- +..|.+
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~------------~g~glG 568 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA------------KGTGLG 568 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC------------CCCchh
Confidence 678999999999998544 56666642 33146999999999999999999999987762 235677
Q ss_pred hHhhhhh
Q 012406 118 LASMTYV 124 (464)
Q Consensus 118 LaSis~v 124 (464)
|+-+-.+
T Consensus 569 L~~~~~~ 575 (607)
T PRK11360 569 LALSQRI 575 (607)
T ss_pred HHHHHHH
Confidence 7765443
No 68
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.61 E-value=0.00016 Score=83.43 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHcchhcCC-CeEEEEEee----CCeeEEEEEeCCCCCCcccHHHhHhhcccCCC
Q 012406 41 RPVSAVKELVENSLDADA-TSINVVVKD----GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~A-t~I~I~i~~----~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~ 99 (464)
.+.+++..||.||+++.. ..|.|.+.. ++.-.|+|.|||+||++++++.+|++|.+.|.
T Consensus 565 ~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~ 628 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQ 628 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCC
Confidence 366899999999999854 357777652 23447999999999999999999999988664
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=97.57 E-value=0.00018 Score=83.14 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
+.+++.+||+||+.+.. +.|.|.+.. ++.-.|+|.|||.||++++++.+|++|++.+-.. ..+-.|.+|
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~--------~~~G~GLGL 850 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES--------AIPGVGLGL 850 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC--------CCCCccHHH
Confidence 56899999999999864 457777753 4444799999999999999999999998865321 122346677
Q ss_pred Hhhhhh
Q 012406 119 ASMTYV 124 (464)
Q Consensus 119 aSis~v 124 (464)
+-...+
T Consensus 851 ~Ivk~i 856 (895)
T PRK10490 851 AICRAI 856 (895)
T ss_pred HHHHHH
Confidence 655443
No 70
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.56 E-value=0.00025 Score=71.72 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcchhcC---CCeEEEEEeeC-------C----eeEEEEEeCCCCCCcccHHHhHhhcccCCCcccccccc
Q 012406 42 PVSAVKELVENSLDAD---ATSINVVVKDG-------G----LKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQS 107 (464)
Q Consensus 42 ~~~avkELIeNSlDA~---At~I~I~i~~~-------g----~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~ 107 (464)
+..++..||.||++|. ...|.|.+... + ...|.|.|||.||++++++.+|.+|.++|-
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------- 309 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-------- 309 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC--------
Confidence 6789999999999975 34566655321 1 125899999999999999999999988762
Q ss_pred ccccCcccchhHhhhhh
Q 012406 108 IKSMGFRGEALASMTYV 124 (464)
Q Consensus 108 ~~t~GfRGeALaSis~v 124 (464)
+-.|.+|+-+..+
T Consensus 310 ----~g~GlGL~i~~~i 322 (348)
T PRK11073 310 ----GGTGLGLSIARNL 322 (348)
T ss_pred ----CCccCCHHHHHHH
Confidence 1246777755444
No 71
>PRK13557 histidine kinase; Provisional
Probab=97.55 E-value=0.00016 Score=76.92 Aligned_cols=72 Identities=22% Similarity=0.191 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEe----------------eCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCcccc
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVK----------------DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYE 103 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~----------------~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~ 103 (464)
+.+++..|+.||+++.. ..|.|... .++.-.|.|.|||.||++++++.+|.+|.++|-
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 56889999999999854 34555443 223346999999999999999999999988762
Q ss_pred ccccccccCcccchhHhhhh
Q 012406 104 DLQSIKSMGFRGEALASMTY 123 (464)
Q Consensus 104 dl~~~~t~GfRGeALaSis~ 123 (464)
..+-.|.+|+-...
T Consensus 354 ------~~~g~GlGL~i~~~ 367 (540)
T PRK13557 354 ------EGKGTGLGLSMVYG 367 (540)
T ss_pred ------CCCCCCccHHHHHH
Confidence 12345777765443
No 72
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=97.50 E-value=0.00025 Score=81.38 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcchhcC-CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhH
Q 012406 42 PVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALA 119 (464)
Q Consensus 42 ~~~avkELIeNSlDA~-At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALa 119 (464)
+..++.+||.||+++. ...|.|.+.. ++.-.|.|.|||+||++++++.+|++|++.+-. .|-.|.||+
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL~ 631 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK----------RGGTGLGLT 631 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC----------CCCCcccHH
Confidence 5679999999999985 4568887764 333469999999999999999999999854311 234577776
Q ss_pred hhhhh-----ceEEEEEEE
Q 012406 120 SMTYV-----GHVTVTTIT 133 (464)
Q Consensus 120 Sis~v-----s~l~I~Srt 133 (464)
-...+ +.++|.|..
T Consensus 632 i~~~l~~~~gG~i~v~s~~ 650 (914)
T PRK11466 632 ISSRLAQAMGGELSATSTP 650 (914)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 54333 357777654
No 73
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=97.49 E-value=0.00046 Score=77.79 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
+..++..||+||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|++|.+.|-... ..-+-.|.+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~------~~~~g~GLGL 671 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGA------QDQPHLGLGL 671 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCC------CCCCCccHHH
Confidence 56889999999999853 457777764 34446999999999999999999999998764321 1112357778
Q ss_pred Hhhhhhc
Q 012406 119 ASMTYVG 125 (464)
Q Consensus 119 aSis~vs 125 (464)
+-...+.
T Consensus 672 ~Ivr~Iv 678 (703)
T TIGR03785 672 YIVRLIA 678 (703)
T ss_pred HHHHHHH
Confidence 7654443
No 74
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=97.49 E-value=0.00026 Score=81.63 Aligned_cols=75 Identities=25% Similarity=0.274 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcchhcCC-CeEEEEEe--eCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDADA-TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A-t~I~I~i~--~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
+..++..||.||+.+.. ..|.|.+. .+..-.|.|.|||.||++++++.+|++|++.+-. ...|-.|.||
T Consensus 580 l~~il~nLi~NAik~~~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--------~~~~g~GLGL 651 (968)
T TIGR02956 580 IRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADGR--------RRSGGTGLGL 651 (968)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCCC--------CCCCCccHHH
Confidence 56899999999999863 45777665 3441369999999999999999999999987621 2235567777
Q ss_pred Hhhhhh
Q 012406 119 ASMTYV 124 (464)
Q Consensus 119 aSis~v 124 (464)
+-...+
T Consensus 652 ~i~~~l 657 (968)
T TIGR02956 652 AISQRL 657 (968)
T ss_pred HHHHHH
Confidence 754333
No 75
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=97.47 E-value=0.00051 Score=60.73 Aligned_cols=58 Identities=28% Similarity=0.250 Sum_probs=43.1
Q ss_pred ccCHHHHHHHHHHcchhcC-----CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCC
Q 012406 39 IQRPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (464)
Q Consensus 39 I~~~~~avkELIeNSlDA~-----At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK 98 (464)
+..+..++.||+.||+.++ ...|.|.+.. ++.-.|.|.|||.||+ ++..++.++.+++
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~--~~~~~~~~~~~~~ 100 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE--NLEEAREPLYTSK 100 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC--chhHhhCCCcccC
Confidence 3456789999999999864 3468887764 3344699999999997 4666777776654
No 76
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.45 E-value=0.00033 Score=80.15 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcchhcCC-CeEEEEEe--e--CC--eeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcc
Q 012406 42 PVSAVKELVENSLDADA-TSINVVVK--D--GG--LKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A-t~I~I~i~--~--~g--~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfR 114 (464)
+.+++..||.||+++.. ..|.|.+. . ++ .-.|.|.|||.||++++++.+|++|+...-. ....+|-.
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~~~~~g~ 482 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS------ISRRHGGT 482 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC------CCCCCCCc
Confidence 56899999999999853 24555443 2 11 2359999999999999999999998754321 11234556
Q ss_pred cchhHhhhhh-----ceEEEEEEE
Q 012406 115 GEALASMTYV-----GHVTVTTIT 133 (464)
Q Consensus 115 GeALaSis~v-----s~l~I~Srt 133 (464)
|.+|+-...+ +.++|.|..
T Consensus 483 GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 483 GLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred chhHHHHHHHHHHhCCEEEEEecC
Confidence 7777744333 357777654
No 77
>PRK09835 sensor kinase CusS; Provisional
Probab=97.37 E-value=0.0011 Score=69.78 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCC
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK 98 (464)
+..++.+||+||+.+.. ..|.|.+.. ++...|.|.|||.||++++++.++++|+++.
T Consensus 376 l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~ 435 (482)
T PRK09835 376 LRRAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVD 435 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCC
Confidence 67899999999999863 358777753 3334699999999999999999999998764
No 78
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.35 E-value=0.00054 Score=79.51 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcchhcCC-CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhH
Q 012406 42 PVSAVKELVENSLDADA-TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALA 119 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A-t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALa 119 (464)
+.+++..||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|++|.+.+-.. ....+-.|.+|+
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~------~~~~~GtGLGL~ 636 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGV------QRNFQGTGLGLA 636 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCC------CCCCCCeehhHH
Confidence 56899999999999853 356666643 3444699999999999999999999998754221 012334567776
Q ss_pred hhhhh-----ceEEEEEE
Q 012406 120 SMTYV-----GHVTVTTI 132 (464)
Q Consensus 120 Sis~v-----s~l~I~Sr 132 (464)
-...+ +.++|.|.
T Consensus 637 I~k~lv~~~gG~I~v~S~ 654 (924)
T PRK10841 637 ICEKLINMMDGDISVDSE 654 (924)
T ss_pred HHHHHHHHCCCEEEEEEc
Confidence 54433 24666654
No 79
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.33 E-value=0.00048 Score=81.61 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHcchhcCCC-eEEEEEe-----eC-CeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCc
Q 012406 41 RPVSAVKELVENSLDADAT-SINVVVK-----DG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGF 113 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At-~I~I~i~-----~~-g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~Gf 113 (464)
.+.+++..||.||+++... .|.|.+. .+ +.-.|.|.|||.||++++++.+|++|.+++... ..+-
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--------~~~G 899 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR--------QQTG 899 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC--------CCCC
Confidence 3568999999999998643 3444432 12 223589999999999999999999998876421 1233
Q ss_pred ccchhHhhhhh
Q 012406 114 RGEALASMTYV 124 (464)
Q Consensus 114 RGeALaSis~v 124 (464)
.|.+|+-...+
T Consensus 900 ~GLGL~i~~~i 910 (1197)
T PRK09959 900 SGLGLMICKEL 910 (1197)
T ss_pred cCchHHHHHHH
Confidence 57777654333
No 80
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.12 E-value=0.00098 Score=68.22 Aligned_cols=74 Identities=30% Similarity=0.369 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcchhcC--CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~--At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
..+++-.+|.||+..+ ...|+|.++. +.+-.|+|.|.|.|||++|++.+|.||+-- |-....+.|--|.+|
T Consensus 343 ~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRv------dkARsR~~gGTGLGL 416 (459)
T COG5002 343 MTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRV------DKARSRKMGGTGLGL 416 (459)
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhh------hhhhhhcCCCCchhH
Confidence 5689999999999987 4578888874 445579999999999999999999999853 223346788888888
Q ss_pred Hhh
Q 012406 119 ASM 121 (464)
Q Consensus 119 aSi 121 (464)
|-.
T Consensus 417 aIa 419 (459)
T COG5002 417 AIA 419 (459)
T ss_pred HHH
Confidence 743
No 81
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=97.11 E-value=0.0013 Score=71.07 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcchhcC-CCeEEEEEee-CCeeEEEEEeCCCCCCccc
Q 012406 42 PVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (464)
Q Consensus 42 ~~~avkELIeNSlDA~-At~I~I~i~~-~g~~~I~V~DNG~GI~~ed 86 (464)
...++.|++.||++++ +..|.|++.. ++.-.+.|.|||.||++++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~~ 457 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPGS 457 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEcCCEEEEEEEECCCCCCcCC
Confidence 4568999999999964 6778888764 4444699999999999763
No 82
>PRK10547 chemotaxis protein CheA; Provisional
Probab=97.03 E-value=0.0031 Score=70.63 Aligned_cols=45 Identities=33% Similarity=0.523 Sum_probs=34.6
Q ss_pred HHHHHHHHcchhcCC--------------CeEEEEEee-CCeeEEEEEeCCCCCCcccHH
Q 012406 44 SAVKELVENSLDADA--------------TSINVVVKD-GGLKLIQVSDDGHGIRYEDLP 88 (464)
Q Consensus 44 ~avkELIeNSlDA~A--------------t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~ 88 (464)
..+..||.||+|+|- ..|.|.... ++.-.|.|.|||.||+++.+.
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~ 447 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERIL 447 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHH
Confidence 346789999999972 258887764 444579999999999998764
No 83
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=96.99 E-value=0.0022 Score=59.06 Aligned_cols=83 Identities=25% Similarity=0.181 Sum_probs=53.1
Q ss_pred cCHHHHHHHHHHcchhcCC-----CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCc
Q 012406 40 QRPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGF 113 (464)
Q Consensus 40 ~~~~~avkELIeNSlDA~A-----t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~Gf 113 (464)
....-|+.|++.||+..|- ..|.|.+.. ++.-.|.|.|+|.||+++.++..+.++.+.+.. ++ ...
T Consensus 41 ~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~--~~------~~~ 112 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI--ED------LRE 112 (161)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCCcc--cc------cCC
Confidence 3456799999999999863 357776653 334469999999999988776655555443321 11 112
Q ss_pred ccchhHhhhhhc-eEEEE
Q 012406 114 RGEALASMTYVG-HVTVT 130 (464)
Q Consensus 114 RGeALaSis~vs-~l~I~ 130 (464)
.|.+|+-+-.+. ++++.
T Consensus 113 ~G~GL~li~~l~d~v~~~ 130 (161)
T PRK04069 113 GGLGLFLIETLMDDVTVY 130 (161)
T ss_pred CceeHHHHHHHHHhEEEE
Confidence 345566555555 45554
No 84
>PRK03660 anti-sigma F factor; Provisional
Probab=96.86 E-value=0.0081 Score=53.54 Aligned_cols=58 Identities=24% Similarity=0.215 Sum_probs=40.7
Q ss_pred ccCHHHHHHHHHHcchhcCC-----CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCC
Q 012406 39 IQRPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (464)
Q Consensus 39 I~~~~~avkELIeNSlDA~A-----t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK 98 (464)
+..+..++.|++.|++..+. ..|.|.+.. ++.-.+.|.|+|.||+. +..++.++.+++
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~ 100 (146)
T PRK03660 37 LTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTK 100 (146)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccC
Confidence 35677899999999997652 357776653 33346999999999974 445666655443
No 85
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=96.84 E-value=0.0036 Score=57.58 Aligned_cols=84 Identities=20% Similarity=0.139 Sum_probs=54.4
Q ss_pred ccCHHHHHHHHHHcchhcC-----CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccC
Q 012406 39 IQRPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMG 112 (464)
Q Consensus 39 I~~~~~avkELIeNSlDA~-----At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~G 112 (464)
+....-||.|++.||+..+ ...|.|.+.. ++.-.|.|.|+|.|++++.++..+.++.+.+.. ++ ..
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~--~~------~~ 111 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI--DD------LR 111 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCc--cc------CC
Confidence 4457779999999999986 2467777643 334469999999999988776555443333211 11 11
Q ss_pred cccchhHhhhhhc-eEEEE
Q 012406 113 FRGEALASMTYVG-HVTVT 130 (464)
Q Consensus 113 fRGeALaSis~vs-~l~I~ 130 (464)
-.|.+|+-+..++ .+.+.
T Consensus 112 ~~G~GL~Li~~L~D~v~~~ 130 (159)
T TIGR01924 112 EGGLGLFLIETLMDEVEVY 130 (159)
T ss_pred CCccCHHHHHHhccEEEEE
Confidence 2366677777776 45554
No 86
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=96.72 E-value=0.0043 Score=67.90 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcchhc-CCCeEEEEEee-CCeeEEEEEeCCCCCCcc
Q 012406 42 PVSAVKELVENSLDA-DATSINVVVKD-GGLKLIQVSDDGHGIRYE 85 (464)
Q Consensus 42 ~~~avkELIeNSlDA-~At~I~I~i~~-~g~~~I~V~DNG~GI~~e 85 (464)
...++.|+|.||+.+ +++.|.|.+.. ++.-.|.|.|||.||+++
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 457899999999986 47788888864 344479999999999976
No 87
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.61 E-value=0.0031 Score=70.77 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccC
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TS 97 (464)
..+++-.|||||+.... ++|.|.... ...-.+.|.|||.|||.++++.+|.+|++-
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~ 834 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRG 834 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcC
Confidence 46899999999999864 446665543 233469999999999999999999999875
No 88
>PRK13560 hypothetical protein; Provisional
Probab=96.60 E-value=0.0052 Score=68.82 Aligned_cols=44 Identities=30% Similarity=0.439 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcchhcC-----CCeEEEEEee--CCeeEEEEEeCCCCCCcc
Q 012406 42 PVSAVKELVENSLDAD-----ATSINVVVKD--GGLKLIQVSDDGHGIRYE 85 (464)
Q Consensus 42 ~~~avkELIeNSlDA~-----At~I~I~i~~--~g~~~I~V~DNG~GI~~e 85 (464)
...++.+||.||+++. +..|.|.+.. ++.-.|.|.|||+||+++
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 3458899999999973 2468887764 345579999999999976
No 89
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=96.59 E-value=0.003 Score=66.68 Aligned_cols=60 Identities=28% Similarity=0.294 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHcchhcC---CCeEEEEEe--eCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCc
Q 012406 41 RPVSAVKELVENSLDAD---ATSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~---At~I~I~i~--~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~ 100 (464)
+..+++-.|+-||+||. |.-|.|.+. +++.-.|-|.|||.|-+.+-++.++.+|+|||--
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v 628 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV 628 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCccccccc
Confidence 67899999999999997 456887775 3455579999999999999999999999999954
No 90
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.53 E-value=0.0069 Score=68.32 Aligned_cols=48 Identities=33% Similarity=0.494 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHcchhcCC--------------CeEEEEEe-eCCeeEEEEEeCCCCCCcccHH
Q 012406 41 RPVSAVKELVENSLDADA--------------TSINVVVK-DGGLKLIQVSDDGHGIRYEDLP 88 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~A--------------t~I~I~i~-~~g~~~I~V~DNG~GI~~edl~ 88 (464)
.+..=+--||.||+|.|- -.|.+... .|+.-.|.|.|||.||+++-+.
T Consensus 432 ~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~ 494 (716)
T COG0643 432 RLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIR 494 (716)
T ss_pred HhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHH
Confidence 344457789999999982 26888775 5667789999999999998754
No 91
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=96.42 E-value=0.013 Score=60.34 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHcchh-cCCCeEEEEEeeCCe-eEEEEEeCCCCCCcc
Q 012406 40 QRPVSAVKELVENSLD-ADATSINVVVKDGGL-KLIQVSDDGHGIRYE 85 (464)
Q Consensus 40 ~~~~~avkELIeNSlD-A~At~I~I~i~~~g~-~~I~V~DNG~GI~~e 85 (464)
..++..+.|++.|=.. |.|+.|+|.+..++- -.++|+|||.|+++.
T Consensus 409 vTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 409 VTLYRLCQELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred EeHHHHHHHHHHHHHhccccceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 3678899999999775 789999999986553 479999999999954
No 92
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=96.36 E-value=0.0057 Score=61.83 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcchhcCC------CeEEEE--------EeeC----CeeEEEEEeCCCCCCcccHHHhHhhcccCCC
Q 012406 42 PVSAVKELVENSLDADA------TSINVV--------VKDG----GLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A------t~I~I~--------i~~~----g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~ 99 (464)
+.+|+-.||.||..|.+ ..|.++ +... .. .|.|.|||.|||++-.+.+|-++.|+|-
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l-~leViDNGPGVP~~L~~~lF~P~Vs~r~ 316 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLAL-PLEVIDNGPGVPPDLQDHLFYPMVSGRE 316 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeee-eeEEecCCCCCChHHhhhccccccccCC
Confidence 56899999999999987 344433 3211 12 5889999999999999999999999884
No 93
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=96.32 E-value=0.018 Score=49.90 Aligned_cols=76 Identities=24% Similarity=0.255 Sum_probs=52.0
Q ss_pred cCHHHHHHHHHHcchhcCCC-----eEEEEEe--eCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccC
Q 012406 40 QRPVSAVKELVENSLDADAT-----SINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMG 112 (464)
Q Consensus 40 ~~~~~avkELIeNSlDA~At-----~I~I~i~--~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~G 112 (464)
....-|+.|++.|++..+.. .|.|.+. .+++ .|.|.|+|.|+++...+..-..- .....
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l-~i~v~D~G~~~d~~~~~~~~~~~-------------~~~~~ 95 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRL-RISVRDNGPGFDPEQLPQPDPWE-------------PDSLR 95 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEE-EEEEEECCCCCChhhccCccccc-------------CCCCC
Confidence 45678999999999998753 6777754 3444 69999999999887554211000 02234
Q ss_pred cccchhHhhhhhc-eEEE
Q 012406 113 FRGEALASMTYVG-HVTV 129 (464)
Q Consensus 113 fRGeALaSis~vs-~l~I 129 (464)
-.|.+|+-|.+++ ++.+
T Consensus 96 ~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 96 EGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred CCCcCHHHHHHHHcEEEE
Confidence 4577788888887 5766
No 94
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=96.13 E-value=0.0078 Score=64.72 Aligned_cols=44 Identities=32% Similarity=0.497 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcchh-cCCCeEEEEEeeC-CeeEEEEEeCCCCCCcc
Q 012406 42 PVSAVKELVENSLD-ADATSINVVVKDG-GLKLIQVSDDGHGIRYE 85 (464)
Q Consensus 42 ~~~avkELIeNSlD-A~At~I~I~i~~~-g~~~I~V~DNG~GI~~e 85 (464)
.-++|+|-+-|++. |.|+.|.|++..+ |-..+.|+|||+||+..
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 46899999999997 6899999999754 66689999999999976
No 95
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=96.10 E-value=0.0071 Score=65.92 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcchhcCCC---------eEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCC
Q 012406 42 PVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At---------~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~ 99 (464)
+.+|+..|+.||.+|... .|.++.+. +|--.+.|.|||.|.+.+++..++++|.|.|-
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~ 668 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTRE 668 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceeccc
Confidence 468999999999998532 47777753 55557999999999999999999999999874
No 96
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=95.64 E-value=0.023 Score=60.81 Aligned_cols=51 Identities=31% Similarity=0.457 Sum_probs=40.2
Q ss_pred ccCHHHHHHHHHHcchhcCCC------eEEEEEee-CCeeEEEEEeCCCCCCcccHHH
Q 012406 39 IQRPVSAVKELVENSLDADAT------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPI 89 (464)
Q Consensus 39 I~~~~~avkELIeNSlDA~At------~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~ 89 (464)
...|.-++.=|||||+-||-. .|.|.... ++.-.++|.|||.||+++....
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 357888999999999999832 57776654 4566899999999999876543
No 97
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.38 E-value=0.027 Score=58.23 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=38.6
Q ss_pred cCHHHHHHHHHHcchh-cCCCeEEEEEee-CCeeEEEEEeCCCCCCccc
Q 012406 40 QRPVSAVKELVENSLD-ADATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (464)
Q Consensus 40 ~~~~~avkELIeNSlD-A~At~I~I~i~~-~g~~~I~V~DNG~GI~~ed 86 (464)
....-+|.|.|-|++- |+|++|.|++.. ++.-.+.|.|||.|.+.+.
T Consensus 278 ~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~ 326 (365)
T COG4585 278 DALFRIVQEALTNAIRHAQATEVRVTLERTDDELRLEVIDNGVGFDPDK 326 (365)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEEEEEcCCEEEEEEEECCcCCCccc
Confidence 3457899999999997 579999999974 3334799999999999774
No 98
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=94.92 E-value=0.036 Score=62.29 Aligned_cols=164 Identities=19% Similarity=0.220 Sum_probs=94.0
Q ss_pred CccccCHHHHHHHHHHcchh----cCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHH--------HhH-hhcccCCCccc
Q 012406 36 GEVIQRPVSAVKELVENSLD----ADATSINVVVKDGGLKLIQVSDDGHGIRYEDLP--------ILC-ERHTTSKLSKY 102 (464)
Q Consensus 36 g~vI~~~~~avkELIeNSlD----A~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~--------~l~-~r~~TSK~~~~ 102 (464)
+.....+..+.-|.+.||.| ++-..|.|.|+.... .|.|.+||.||+-+-.+ .++ .-|+.|++.
T Consensus 48 ~t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~~-~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny~-- 124 (842)
T KOG0355|consen 48 RTYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEKN-EISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYD-- 124 (842)
T ss_pred eecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCCC-EEEEEeCCCcceeeecccccccchHHHHhhhhhccccC--
Confidence 36677899999999999998 345689999986543 59999999999987643 333 346666654
Q ss_pred cccccccccCcccchhHhhhhhc--eEEEEEEEcCCccEEEEEEEcCceec-cc--ccccCCCceEEEEEeeeccchhhh
Q 012406 103 EDLQSIKSMGFRGEALASMTYVG--HVTVTTITKGHLHGYRVSYRDGVMES-EP--KACAAVKGTQIMVENLFYNMIARR 177 (464)
Q Consensus 103 ~dl~~~~t~GfRGeALaSis~vs--~l~I~Srt~~~~~~~~~~~~~G~~~~-~~--~~~~~~~GTtV~V~~LF~n~PvRr 177 (464)
|-..-.+-|..|-+ |-+|.+- +.++.|-.......|+..+.++.... ++ .+...+.+|.|++. |.-.
T Consensus 125 -d~ekK~tggrngyg-akLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~~~~~yTkitF~------PDl~ 196 (842)
T KOG0355|consen 125 -DDEKKVTGGRNGYG-AKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTDEDYTKITFS------PDLE 196 (842)
T ss_pred -CCccccccCCCccc-eeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecCCCCCcceEEeC------cChH
Confidence 33332333333332 4444443 34444444333445565565544321 12 23445569999996 6555
Q ss_pred hcccCCchhh-hhHHHHHHHHH--hhCCCeEEEEEECCe
Q 012406 178 KTLQNSSDDY-TKIVDLLSRMA--IHHTNVSFSCRKHGA 213 (464)
Q Consensus 178 k~lk~~~~e~-~~I~~~l~~yA--l~~p~v~f~l~~~g~ 213 (464)
++.- .++ +.+.+++.+.+ +.-+-....+..++.
T Consensus 197 ~F~m---~eLD~Div~l~~rr~~d~a~~~~~vkv~ln~~ 232 (842)
T KOG0355|consen 197 KFKM---KELDDDIVALMARRAYDLAGSVKSVKVELNGK 232 (842)
T ss_pred hcCc---hhhcchHHHhHHhhhhhhcccccceeeeecCC
Confidence 5431 122 34566665444 333323334444443
No 99
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=94.82 E-value=0.1 Score=57.41 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcchhcCC---CeEEEEEee--CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccc
Q 012406 42 PVSAVKELVENSLDADA---TSINVVVKD--GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGE 116 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A---t~I~I~i~~--~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGe 116 (464)
..++...||.||+..+. ..|.|..+. +++ .+.|.|||.||+++-++.+|..|-. +.+...|+-.|.
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~-t~sV~dng~Gi~~a~~~riF~iFqR--------l~s~~~y~gtG~ 707 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAERQEDEW-TFSVRDNGIGIDPAYFERIFVIFQR--------LHSRDEYLGTGL 707 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeeccCCce-EEEecCCCCCcCHHHHHHHHHHHHh--------cCchhhhcCCCc
Confidence 45788899999999874 558888763 444 6999999999999999887754431 222233555888
Q ss_pred hhHhh---hhh--ceEEEEEEEcCCccEEEEEEEcC
Q 012406 117 ALASM---TYV--GHVTVTTITKGHLHGYRVSYRDG 147 (464)
Q Consensus 117 ALaSi---s~v--s~l~I~Srt~~~~~~~~~~~~~G 147 (464)
+|+-. .++ +.+.+.|+.. +..++......+
T Consensus 708 GL~I~kkI~e~H~G~i~vEs~~g-EgsTF~f~lp~~ 742 (750)
T COG4251 708 GLAICKKIAERHQGRIWVESTPG-EGSTFYFTLPVG 742 (750)
T ss_pred cHHHHHHHHHHhCceEEEeecCC-CceeEEEEeecC
Confidence 88744 333 3577777642 333554444333
No 100
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.32 E-value=0.076 Score=51.68 Aligned_cols=46 Identities=30% Similarity=0.322 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHHcchhcCCC-----eEEEEEee--CC-eeEEEEEeCCCCCCcc
Q 012406 40 QRPVSAVKELVENSLDADAT-----SINVVVKD--GG-LKLIQVSDDGHGIRYE 85 (464)
Q Consensus 40 ~~~~~avkELIeNSlDA~At-----~I~I~i~~--~g-~~~I~V~DNG~GI~~e 85 (464)
..+.-++.||+.||+..|+. .|.|.+.. ++ ...+.|.|||.|++.+
T Consensus 121 ~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 121 VPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 45678899999999998865 57777753 33 3579999999999965
No 101
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=93.95 E-value=0.37 Score=43.97 Aligned_cols=85 Identities=27% Similarity=0.272 Sum_probs=50.8
Q ss_pred cccCHHHHHHHHHHcchhcC-C-----CeEEEEE--eeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCcccccccccc
Q 012406 38 VIQRPVSAVKELVENSLDAD-A-----TSINVVV--KDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIK 109 (464)
Q Consensus 38 vI~~~~~avkELIeNSlDA~-A-----t~I~I~i--~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~ 109 (464)
.+.+...||.|++.|++.++ . ..|.|.+ +++. -.|.|.|.|.||. ++........+.. +++.
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~-~~i~i~D~G~~~~--~~~~~~~~~~~~~----~~~~--- 106 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGK-LEIRIWDQGPGIE--DLEESLGPGDTTA----EGLQ--- 106 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCe-EEEEEEeCCCCCC--CHHHhcCCCCCCC----cccc---
Confidence 34578899999999999864 3 4555555 4444 4699999997776 5555544442222 2211
Q ss_pred ccCcccchhHhhhhhc-eEEEEEEEcC
Q 012406 110 SMGFRGEALASMTYVG-HVTVTTITKG 135 (464)
Q Consensus 110 t~GfRGeALaSis~vs-~l~I~Srt~~ 135 (464)
- .|.+|+-+-.+. .+++.....+
T Consensus 107 -~--~G~Gl~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 107 -E--GGLGLFLAKRLMDEFSYERSEDG 130 (146)
T ss_pred -c--ccccHHHHhhhheeEEEEeccCC
Confidence 1 244555555444 5666644433
No 102
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=93.51 E-value=0.13 Score=55.58 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcchhcC-CCeEEEEEee--CCeeEEEEEeCCCCCCcc
Q 012406 42 PVSAVKELVENSLDAD-ATSINVVVKD--GGLKLIQVSDDGHGIRYE 85 (464)
Q Consensus 42 ~~~avkELIeNSlDA~-At~I~I~i~~--~g~~~I~V~DNG~GI~~e 85 (464)
..+++.||+.||+.+. +..|.|.+.. ++.-.|.|.|||+||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 4578999999999864 4578887753 344569999999999974
No 103
>PRK13559 hypothetical protein; Provisional
Probab=93.07 E-value=0.15 Score=51.97 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHcchhcCC-----CeEEEEE--ee-CCeeEEEEEeCCCCCCcc
Q 012406 41 RPVSAVKELVENSLDADA-----TSINVVV--KD-GGLKLIQVSDDGHGIRYE 85 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~A-----t~I~I~i--~~-~g~~~I~V~DNG~GI~~e 85 (464)
.+..++.||+.||+.+|+ ..|.|.+ .. ++.-.|.|.|||.|++++
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 356799999999999964 4788887 32 444579999999998765
No 104
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=91.58 E-value=0.43 Score=49.66 Aligned_cols=56 Identities=29% Similarity=0.353 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHcchhcC----------CCeEEEEEeeCC-eeEEEEEeCCCCCCcccHHHhHhhccc
Q 012406 41 RPVSAVKELVENSLDAD----------ATSINVVVKDGG-LKLIQVSDDGHGIRYEDLPILCERHTT 96 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~----------At~I~I~i~~~g-~~~I~V~DNG~GI~~edl~~l~~r~~T 96 (464)
-+..++-||+.||..|- -.-|.|.|-.|. -..|.|.|-|=||+.++++.+|.-.++
T Consensus 260 hL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~yS 326 (414)
T KOG0787|consen 260 HLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYS 326 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcc
Confidence 46788999999999982 234888775432 236899999999999999999965443
No 105
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=89.84 E-value=0.37 Score=51.64 Aligned_cols=44 Identities=30% Similarity=0.470 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHcchhcCCC------eEEEEEe--eCCeeEEEEEeCCCCCCcc
Q 012406 41 RPVSAVKELVENSLDADAT------SINVVVK--DGGLKLIQVSDDGHGIRYE 85 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At------~I~I~i~--~~g~~~I~V~DNG~GI~~e 85 (464)
=|.=.+.=|||||+..|-+ .|.|.+. +..+ .|.|+|||.||+++
T Consensus 456 iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l-~i~VeDng~li~p~ 507 (557)
T COG3275 456 IPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADL-RIEVEDNGGLIQPD 507 (557)
T ss_pred CchhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeE-EEEEecCCCCcCCC
Confidence 3556788899999987632 4555554 4444 69999999999986
No 106
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=83.08 E-value=1.5 Score=45.31 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=37.1
Q ss_pred cCHHHHHHHHHHcch-hcCCCeEEEEEee-CCeeEEEEEeCCCCCCcccH
Q 012406 40 QRPVSAVKELVENSL-DADATSINVVVKD-GGLKLIQVSDDGHGIRYEDL 87 (464)
Q Consensus 40 ~~~~~avkELIeNSl-DA~At~I~I~i~~-~g~~~I~V~DNG~GI~~edl 87 (464)
+.++-++.|-+.|== .||||.|.|.+.. ++.-.+.|.|||.|.+.++.
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~ 407 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKEA 407 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchhh
Confidence 456677778777743 4799999999975 44557999999999996643
No 107
>PF14501 HATPase_c_5: GHKL domain
Probab=54.50 E-value=92 Score=25.68 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHcchhcC-----CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcc
Q 012406 41 RPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~-----At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfR 114 (464)
++..++.-|++||++|. ...|.|.+.. ++.-.|.|.-.-.+ +...+. +++ ..-+.+
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~~~~----~~~~~~----~~~----------~~~~~~ 66 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENSCEK----EIEKLE----SSS----------SKKKGH 66 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCC----cccccc----ccc----------cCCCCC
Confidence 46778999999999984 3477887764 44445666655333 111111 111 123457
Q ss_pred cchhHhhhhhc
Q 012406 115 GEALASMTYVG 125 (464)
Q Consensus 115 GeALaSis~vs 125 (464)
|.||.++..+.
T Consensus 67 G~GL~~v~~i~ 77 (100)
T PF14501_consen 67 GIGLKNVKKIL 77 (100)
T ss_pred CcCHHHHHHHH
Confidence 88999887654
No 108
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=36.25 E-value=36 Score=39.11 Aligned_cols=84 Identities=26% Similarity=0.289 Sum_probs=46.1
Q ss_pred HHHHHHHHcchhc---CCCeEEEEE---eeCC-eeEEEEE-----eCCCCCCcccHHHhHhhcccCCCcccccccccccc
Q 012406 44 SAVKELVENSLDA---DATSINVVV---KDGG-LKLIQVS-----DDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSM 111 (464)
Q Consensus 44 ~avkELIeNSlDA---~At~I~I~i---~~~g-~~~I~V~-----DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~ 111 (464)
.++.|||+||+|- ||+-+.|.- ..++ .....|. |||-||.++-+..----.+.+|+ +++.-...-+.
T Consensus 149 ~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~ 227 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGN 227 (775)
T ss_pred ChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhcc
Confidence 6899999999996 577644432 1233 3445555 77999998865432222233454 22211111223
Q ss_pred CcccchhHhhhhhc-eEEEEEE
Q 012406 112 GFRGEALASMTYVG-HVTVTTI 132 (464)
Q Consensus 112 GfRGeALaSis~vs-~l~I~Sr 132 (464)
||.+ |...++ .+.+.+|
T Consensus 228 gfkt----st~rlGa~~i~~~R 245 (775)
T KOG1845|consen 228 GFKT----STMRLGADAIVFSR 245 (775)
T ss_pred cccc----chhhhccceeEeeh
Confidence 3433 555566 4666666
No 109
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=34.82 E-value=30 Score=36.24 Aligned_cols=80 Identities=25% Similarity=0.412 Sum_probs=52.9
Q ss_pred ccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCcc
Q 012406 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSK 101 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~ 101 (464)
++.+|.+-.|-+.+. .--.-|||.-|+|+||++|.|-|- | .-=.|-|.|| +..|+-+|...-
T Consensus 96 L~lVp~~~rnpl~~t------s~GtGeLI~~Ald~Ga~~IiiGiG--G---SATnDgG~Gm----l~ALG~~f~d~~--- 157 (378)
T COG1929 96 LHLVPPEKRNPLITT------SYGTGELIKHALDAGAKHIIIGIG--G---SATNDGGAGM----LQALGAQFLDAD--- 157 (378)
T ss_pred CCCCCccccCccccc------cccHHHHHHHHHhCCCcEEEEecc--c---cccCCchHHH----HHHhCchhhhcc---
Confidence 455555544443322 123789999999999999998763 3 2346888888 455666665432
Q ss_pred ccccccccccCcccchhHhhhhhc
Q 012406 102 YEDLQSIKSMGFRGEALASMTYVG 125 (464)
Q Consensus 102 ~~dl~~~~t~GfRGeALaSis~vs 125 (464)
-..+|+-|-.|+.|.++.
T Consensus 158 ------g~~i~~gG~~L~~l~~id 175 (378)
T COG1929 158 ------GNDLGFGGGSLANLASID 175 (378)
T ss_pred ------CCCccccchhhhhhhhcc
Confidence 245788888888777654
No 110
>PRK13669 hypothetical protein; Provisional
Probab=34.31 E-value=48 Score=27.16 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=27.7
Q ss_pred ceeEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHh
Q 012406 256 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAA 300 (464)
Q Consensus 256 ~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~ 300 (464)
.++.-.|..+......+ ..|-+||||+|....=...+.++|+.
T Consensus 29 ~dVie~gCls~CG~C~~--~~FAlVng~~V~a~t~eeL~~kI~~~ 71 (78)
T PRK13669 29 LDVLEYGCLGYCGICSE--GLFALVNGEVVEGETPEELVENIYAH 71 (78)
T ss_pred ceEEEcchhhhCcCccc--CceEEECCeEeecCCHHHHHHHHHHH
Confidence 44555566665554433 35799999999886655555555554
No 111
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=26.19 E-value=86 Score=25.69 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=27.5
Q ss_pred ceeEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHh
Q 012406 256 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAA 300 (464)
Q Consensus 256 ~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~ 300 (464)
.++.-.|.++......+ ..|.+||||+|..+.=...+.++++.
T Consensus 29 ~~Vie~gCl~~Cg~C~~--~pFAlVnG~~V~A~t~eeL~~kI~~~ 71 (78)
T PF07293_consen 29 IDVIEYGCLSYCGPCAK--KPFALVNGEIVAAETAEELLEKIKEK 71 (78)
T ss_pred ccEEEcChhhhCcCCCC--CccEEECCEEEecCCHHHHHHHHHHH
Confidence 34556777776654432 35899999999876555555555543
No 112
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.12 E-value=1.3e+02 Score=27.77 Aligned_cols=31 Identities=26% Similarity=0.151 Sum_probs=23.6
Q ss_pred cccCHHHHHHHHHHcchhcCCC-eEEEEEeeC
Q 012406 38 VIQRPVSAVKELVENSLDADAT-SINVVVKDG 68 (464)
Q Consensus 38 vI~~~~~avkELIeNSlDA~At-~I~I~i~~~ 68 (464)
+-++..-.+.||||||+...|+ .|.|+....
T Consensus 60 vrhsvgYl~NELiENAVKfra~geIvieasl~ 91 (184)
T COG5381 60 VRHSVGYLANELIENAVKFRATGEIVIEASLY 91 (184)
T ss_pred HhhhHHHHHHHHHHhhhcccCCCcEEEEEEec
Confidence 3456777899999999999887 566666543
No 113
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=22.69 E-value=1e+02 Score=33.53 Aligned_cols=47 Identities=26% Similarity=0.448 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHHcchhc-----CCCeEEEEEeeCCeeEEEEEeCCC---CCCcccHH
Q 012406 39 IQRPVSAVKELVENSLDA-----DATSINVVVKDGGLKLIQVSDDGH---GIRYEDLP 88 (464)
Q Consensus 39 I~~~~~avkELIeNSlDA-----~At~I~I~i~~~g~~~I~V~DNG~---GI~~edl~ 88 (464)
-.-|..|++|+|-||+=. .+..|.|.+.++ .|.|.-.|- ||+++++.
T Consensus 268 ~dyP~~alREai~NAv~HRDYs~~~~~v~I~iydD---RieI~NPGgl~~gi~~~~l~ 322 (467)
T COG2865 268 WDYPLEALREAIINAVIHRDYSIRGRNVHIEIYDD---RIEITNPGGLPPGITPEDLL 322 (467)
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCceEEEEECC---eEEEECCCCCCCCCChhHcc
Confidence 346889999999999943 244899988877 488998774 88877763
No 114
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.92 E-value=75 Score=32.05 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=17.9
Q ss_pred CCeEEEEEeeCCeeEEEEEeCCCCCC
Q 012406 58 ATSINVVVKDGGLKLIQVSDDGHGIR 83 (464)
Q Consensus 58 At~I~I~i~~~g~~~I~V~DNG~GI~ 83 (464)
+++|+|.=+.+.+ -++|+|||-|-.
T Consensus 127 ~kEv~v~Ksedal-GlTITDNG~GyA 151 (334)
T KOG3938|consen 127 AKEVEVVKSEDAL-GLTITDNGAGYA 151 (334)
T ss_pred ceeEEEEeccccc-ceEEeeCCccee
Confidence 5677775555555 389999999943
No 115
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=21.61 E-value=1.5e+02 Score=29.23 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=42.6
Q ss_pred EEEcCcccCChHHHHHHHHHHHhcCCC-CCCcEEEEEEEcCCCceecccCCCCCeEecCCh
Q 012406 278 LFVNDRLVECAPLKRAVEIVYAATFPK-ASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQ 337 (464)
Q Consensus 278 lFIN~R~V~~~~L~kaI~~vy~~~lpk-~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e 337 (464)
...||||++...+...+..+=..-.|+ +--|-=+|.+ .|+.+=.=.-|.||.|.|..+
T Consensus 35 ~i~aG~Plt~~~l~~l~~~l~~~~~~~~g~lp~nvL~~--~~~~~vWy~p~~~R~v~F~~~ 93 (228)
T TIGR03737 35 VIGAGRPLTRDDLMELVRQLAQQQAPDLEFLDPNVLAL--SPGLMVWWTPAATRRVFFQSK 93 (228)
T ss_pred eecCCccCCHHHHHHHHHHHHhhccCCCcccCccEEEe--CCCeEEEEecCceEEEEEecc
Confidence 457999999988887777663333344 3445556665 778888889999999999733
No 116
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.36 E-value=33 Score=30.87 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=23.3
Q ss_pred cCCcceecchhhhhhhhhhccccccCCCCC
Q 012406 408 LGISWQPTFLREVIVLLTFINKFLCTPSKQ 437 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (464)
+.=+|-|+.- |+-|||+||-+||-|+..
T Consensus 92 LqNrWsp~Yd--va~ILtsiQslL~dPn~~ 119 (152)
T KOG0419|consen 92 LQNRWSPTYD--VASILTSIQSLLNDPNPN 119 (152)
T ss_pred HhcCCCCchh--HHHHHHHHHHHhcCCCCC
Confidence 3338999864 889999999999999864
No 117
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=20.71 E-value=72 Score=21.39 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=10.1
Q ss_pred CCeeEEEEEeCCC
Q 012406 68 GGLKLIQVSDDGH 80 (464)
Q Consensus 68 ~g~~~I~V~DNG~ 80 (464)
+|-..|+|.|+|+
T Consensus 11 Dgn~qITIeD~GP 23 (30)
T PF07492_consen 11 DGNFQITIEDTGP 23 (30)
T ss_pred CCCcEEEEecCCC
Confidence 4455799999996
No 118
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=20.68 E-value=95 Score=25.15 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=26.0
Q ss_pred CHHH-HHHHHHHcchhcCCCeEEEEEeeCC-eeEEEEEeCCC
Q 012406 41 RPVS-AVKELVENSLDADATSINVVVKDGG-LKLIQVSDDGH 80 (464)
Q Consensus 41 ~~~~-avkELIeNSlDA~At~I~I~i~~~g-~~~I~V~DNG~ 80 (464)
+|.+ -+|+|+++|-+.|-- |+ +..|. .+.+.|.|+|+
T Consensus 20 ~~~Sap~Krl~~~ak~~~~l-Id--aT~Grktrsviitdsgh 58 (73)
T PF04025_consen 20 SPDSAPIKRLIQEAKEEGKL-ID--ATYGRKTRSVIITDSGH 58 (73)
T ss_pred CCcchhHHHHHHHHHHcCcE-EE--eeCCCceeEEEEEcCCc
Confidence 4444 499999999998742 33 33333 46899999998
Done!