Query 012406
Match_columns 464
No_of_seqs 297 out of 2142
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na3_A DNA mismatch repair pro 100.0 1.3E-83 4.6E-88 655.5 30.1 344 18-365 5-348 (348)
2 3h4l_A DNA mismatch repair pro 100.0 4.8E-77 1.7E-81 611.8 27.8 335 19-356 3-362 (367)
3 1h7s_A PMS1 protein homolog 2; 100.0 1E-71 3.5E-76 573.1 30.2 333 19-353 12-364 (365)
4 1b63_A MUTL; DNA mismatch repa 100.0 2.9E-70 1E-74 556.3 32.2 326 21-352 4-332 (333)
5 1s16_A Topoisomerase IV subuni 100.0 2.3E-31 7.7E-36 275.4 31.1 309 19-353 7-359 (390)
6 3cwv_A DNA gyrase, B subunit, 100.0 1.1E-30 3.8E-35 268.4 29.8 297 28-355 12-347 (369)
7 1ei1_A DNA gyrase B, GYRB; ATP 100.0 8.8E-31 3E-35 271.0 25.5 309 19-354 6-362 (391)
8 3fv5_A DNA topoisomerase 4 sub 100.0 4.3E-31 1.5E-35 250.4 15.2 167 32-212 6-192 (201)
9 1kij_A DNA gyrase subunit B; t 100.0 1E-26 3.6E-31 240.6 25.1 307 20-353 6-360 (390)
10 1y4s_A Chaperone protein HTPG; 99.9 2E-27 7E-32 254.9 15.6 290 21-352 12-356 (559)
11 2ioq_A Chaperone protein HTPG; 99.9 1.2E-27 4E-32 259.6 11.2 290 21-351 12-355 (624)
12 4duh_A DNA gyrase subunit B; s 99.9 3.1E-25 1E-29 212.8 15.3 182 18-212 6-209 (220)
13 2o1u_A Endoplasmin; GRP94, HSP 99.9 2.7E-25 9.1E-30 242.1 11.3 285 21-350 30-378 (666)
14 3t0h_A Heat shock protein HSP 99.9 2.6E-25 8.9E-30 214.4 7.3 164 21-202 17-209 (228)
15 1zxm_A TOPO IIA ATPase, DNA to 99.9 4E-23 1.4E-27 214.0 22.1 270 21-318 5-342 (400)
16 4emv_A DNA topoisomerase IV, B 99.9 1E-23 3.5E-28 202.9 15.4 181 18-212 12-215 (226)
17 3o0i_A HSP90AA1 protein; HSP90 99.9 1.9E-24 6.4E-29 211.1 7.2 163 21-202 45-237 (256)
18 3lnu_A Topoisomerase IV subuni 99.9 2.9E-21 1E-25 199.9 29.0 310 18-355 25-379 (408)
19 2ior_A Chaperone protein HTPG; 99.9 2.8E-23 9.4E-28 201.2 9.2 167 20-202 31-227 (235)
20 3ttz_A DNA gyrase subunit B; p 99.9 2.4E-22 8.2E-27 189.9 13.6 165 21-212 6-182 (198)
21 2gqp_A Endoplasmin; GRP94, HSP 99.8 1.1E-20 3.9E-25 183.0 10.0 162 21-200 17-210 (236)
22 1yc1_A HSP 86, heat shock prot 99.8 3.2E-20 1.1E-24 182.6 9.0 165 22-201 54-242 (264)
23 2wer_A ATP-dependent molecular 99.8 1.4E-19 4.7E-24 173.5 9.7 166 21-202 11-202 (220)
24 1mu5_A Type II DNA topoisomera 99.7 1.4E-16 4.8E-21 168.5 16.9 156 41-214 32-212 (471)
25 1qy5_A Endoplasmin; GRP94, NEC 99.7 1.5E-17 5E-22 163.9 7.7 162 21-201 13-207 (269)
26 2q2e_B Type 2 DNA topoisomeras 99.7 3.8E-17 1.3E-21 177.5 11.6 157 40-213 36-215 (621)
27 2zbk_B Type 2 DNA topoisomeras 99.7 1.5E-16 5.2E-21 170.3 15.6 154 41-213 31-210 (530)
28 1pvg_A DNA topoisomerase II; G 99.6 5.9E-16 2E-20 161.1 13.4 179 21-210 16-244 (418)
29 3peh_A Endoplasmin homolog; st 99.6 8.1E-16 2.8E-20 151.7 11.3 162 22-202 32-223 (281)
30 3nmq_A Heat shock protein HSP 99.6 5.2E-16 1.8E-20 150.1 7.1 161 22-201 25-213 (239)
31 2cg9_A ATP-dependent molecular 99.6 2.2E-15 7.4E-20 164.5 12.3 159 22-202 12-202 (677)
32 3ied_A Heat shock protein; HSP 99.3 1.7E-12 5.9E-17 126.0 9.2 159 22-200 33-262 (272)
33 4gfh_A DNA topoisomerase 2; to 99.1 4.3E-10 1.5E-14 129.8 14.6 173 20-204 10-230 (1177)
34 1id0_A PHOQ histidine kinase; 98.5 2.3E-07 8E-12 80.9 7.9 74 42-125 45-119 (152)
35 2c2a_A Sensor histidine kinase 98.4 4.4E-07 1.5E-11 86.4 8.1 78 41-124 138-221 (258)
36 3jz3_A Sensor protein QSEC; he 98.4 3.2E-07 1.1E-11 84.4 6.2 72 42-125 118-191 (222)
37 1th8_A Anti-sigma F factor; SP 98.4 2.1E-06 7.2E-11 74.8 11.0 75 40-126 38-118 (145)
38 1bxd_A ENVZ(290-450), protein 98.3 1.4E-06 4.8E-11 77.0 9.3 76 41-124 47-123 (161)
39 4ew8_A Sensor protein DIVL; si 98.3 1.3E-06 4.6E-11 83.1 7.7 72 42-125 156-230 (268)
40 2q8g_A [pyruvate dehydrogenase 98.3 8.5E-07 2.9E-11 91.3 6.6 84 41-124 243-336 (407)
41 2e0a_A Pyruvate dehydrogenase 98.3 9.9E-07 3.4E-11 90.4 6.9 84 41-124 230-323 (394)
42 1i58_A Chemotaxis protein CHEA 98.2 2.6E-06 8.8E-11 77.4 8.4 77 42-125 48-163 (189)
43 3ehg_A Sensor kinase (YOCF pro 98.2 2.4E-06 8.1E-11 73.1 7.3 46 42-87 41-88 (128)
44 1y8o_A [pyruvate dehydrogenase 98.2 1E-06 3.5E-11 91.2 5.6 83 42-124 254-347 (419)
45 1ysr_A Sensor-type histidine k 98.2 7.4E-06 2.5E-10 71.2 10.3 75 41-124 46-122 (150)
46 1r62_A Nitrogen regulation pro 98.2 2.3E-06 7.9E-11 74.7 6.6 72 41-124 48-133 (160)
47 3d36_A Sporulation kinase B; G 98.1 9.8E-06 3.4E-10 75.5 10.7 74 41-125 123-199 (244)
48 2btz_A Pyruvate dehydrogenase 98.1 1.6E-06 5.4E-11 88.8 5.5 83 41-124 231-323 (394)
49 1gkz_A [3-methyl-2-oxobutanoat 98.1 5.4E-06 1.9E-10 84.6 9.0 59 41-99 238-307 (388)
50 3a0y_A Sensor protein; ATP-LID 98.1 3.5E-06 1.2E-10 73.0 6.1 72 41-124 47-121 (152)
51 3sl2_A Sensor histidine kinase 98.1 1.3E-05 4.6E-10 71.8 10.0 78 42-125 44-126 (177)
52 3ehh_A Sensor kinase (YOCF pro 98.0 6.9E-06 2.3E-10 75.8 7.1 46 42-87 131-178 (218)
53 1b3q_A Protein (chemotaxis pro 98.0 7.9E-06 2.7E-10 83.6 8.1 85 42-133 107-235 (379)
54 3a0r_A Sensor protein; four he 98.0 6.2E-06 2.1E-10 81.1 5.8 58 41-98 244-304 (349)
55 3zxo_A Redox sensor histidine 97.9 4.3E-05 1.5E-09 64.6 9.9 46 41-86 43-89 (129)
56 3zxq_A Hypoxia sensor histidin 97.9 1.6E-05 5.4E-10 67.0 6.9 45 41-86 39-85 (124)
57 4fpp_A Phosphotransferase; fou 97.2 0.0013 4.5E-08 62.6 9.6 58 41-98 146-208 (247)
58 3ke6_A Protein RV1364C/MT1410; 95.2 0.031 1.1E-06 57.2 7.3 47 39-85 295-348 (399)
59 1ixm_A SPO0B, protein (sporula 93.7 0.051 1.8E-06 50.3 4.4 49 45-93 109-168 (192)
60 3rgh_A Filamin-A; cell adhesio 33.3 33 0.0011 27.6 3.5 29 53-81 33-63 (100)
61 2w0p_A Filamin-A; alternative 31.9 50 0.0017 26.0 4.3 30 53-82 28-57 (94)
62 2bp3_A Filamin A; structural p 27.3 57 0.0019 25.8 3.9 30 53-82 31-60 (97)
63 3hqc_A Tensin-like C1 domain-c 27.0 22 0.00077 31.6 1.5 50 43-102 36-85 (157)
64 3pr6_A Trapp-associated protei 26.3 49 0.0017 29.6 3.6 70 257-353 76-151 (162)
65 2ee6_A Filamin-B; beta-sandwic 25.7 50 0.0017 26.6 3.3 30 53-82 36-65 (105)
66 1v05_A Filamin C; actin-bindin 23.2 69 0.0024 25.1 3.7 30 53-82 31-62 (96)
67 2eec_A Filamin-B; beta-sandwic 21.6 58 0.002 27.4 3.0 33 49-81 42-74 (125)
68 2k9u_A Gamma filamin; cytoskel 21.3 65 0.0022 26.6 3.3 29 53-81 43-71 (119)
69 2dia_A Filamin-B; beta-sandwic 20.5 66 0.0023 26.2 3.1 30 53-82 36-67 (113)
70 3cnk_A Filamin-A; FLNA24, X-RA 20.1 68 0.0023 24.8 3.0 30 53-82 24-55 (89)
No 1
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-83 Score=655.48 Aligned_cols=344 Identities=53% Similarity=0.880 Sum_probs=285.1
Q ss_pred CCccccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccC
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TS 97 (464)
.+++|++||++++++|+|||+|.+|.++|+|||+||+||+|+.|.|.++.+|...|+|.|||+||++++++.+|++|+||
T Consensus 5 m~~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~ts 84 (348)
T 3na3_A 5 VAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTS 84 (348)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCS
T ss_pred cccccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhcccccc
Confidence 56689999999999999999999999999999999999999999999998877779999999999999999999999999
Q ss_pred CCccccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEEcCceecccccccCCCceEEEEEeeeccchhhh
Q 012406 98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (464)
Q Consensus 98 K~~~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRr 177 (464)
|+.+++|+..+.++|||||||+||+++|+|+|+||++++..+|++.|++|++....++++.++||+|+|+|||+|+|+|+
T Consensus 85 K~~~~~dl~~i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~ 164 (348)
T 3na3_A 85 KLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRR 164 (348)
T ss_dssp SCCCC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHH
T ss_pred ccCcchhhhccccCCcCChHHHHhhcccEEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCCcEEEECcccccCchhh
Confidence 99999999999999999999999999999999999999989999999999886555677889999999999999999999
Q ss_pred hcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEcCCCCCHHHHHHHHhChhhhcccEEeeeeccCCCCCce
Q 012406 178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFV 257 (464)
Q Consensus 178 k~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~ 257 (464)
++|++.+.|+.+|.+++++||++||+|+|+|.++|+....+++.+..++.+++.++||..++++|++++.+. +. .+
T Consensus 165 k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~--~~--~~ 240 (348)
T 3na3_A 165 KALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCED--KT--LA 240 (348)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEE--GG--GT
T ss_pred hhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeec--CC--cc
Confidence 999998899999999999999999999999999998766788989999999999999999999999998876 22 45
Q ss_pred eEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCCh
Q 012406 258 FKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQ 337 (464)
Q Consensus 258 ~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e 337 (464)
++++||++.|+++.++..||+|||||||.++.|.++|+++|+.++|+++|||+||+|+|||+.|||||||+|+||+|.+|
T Consensus 241 ~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e 320 (348)
T 3na3_A 241 FKMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHE 320 (348)
T ss_dssp EEEEEEEECSSCCBSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC--------------------
T ss_pred EEEEEEEeCCccCCCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCH
Confidence 99999999999887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcccccc
Q 012406 338 ELIVEKIQSAVELKLRQSNDSRTYKEQT 365 (464)
Q Consensus 338 ~~Ii~~I~~~l~~~L~~~~~sr~f~~q~ 365 (464)
++|++.|+++|++.|...++||+|.+|+
T Consensus 321 ~~i~~~i~~~v~~~l~~~~~sr~f~~~~ 348 (348)
T 3na3_A 321 ESILERVQQHIESKLLGSNSSRMYFTQT 348 (348)
T ss_dssp --CTHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeccC
Confidence 9999999999999999999999999985
No 2
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-77 Score=611.78 Aligned_cols=335 Identities=29% Similarity=0.493 Sum_probs=286.7
Q ss_pred CccccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCC
Q 012406 19 PPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (464)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK 98 (464)
+++|++||++++++|+|||+|.+|.++|+|||+||+||||+.|.|.++++|...|+|.|||+||++++++.+|++|+|||
T Consensus 3 M~~I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp ----------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CCcceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCc
Confidence 45699999999999999999999999999999999999999999999887777899999999999999999999999999
Q ss_pred CccccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEE-cCceecccccccCCCceEEEEEeeeccchhhh
Q 012406 99 LSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (464)
Q Consensus 99 ~~~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~-~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRr 177 (464)
+.+++|+..+.++|||||||+||+++|+|+|+||+++ ..+|++.|+ +|++.. ..+++.++||+|+|+|||||+|+|+
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si~avS~l~V~sr~~~-~~~~~~~~~~~G~~~~-~~~~~~~~GTtV~v~~LF~n~P~R~ 160 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSP-PKADKLEYDMVGHITS-KTTTSRNKGTTVLVSQLFHNLPVRQ 160 (367)
T ss_dssp -------CCCCEEEETTHHHHHHHHSSEEEEEEESST-TCEEEEEECTTCCEEE-EEEECCSSEEEEEEESTTTTCHHHH
T ss_pred CCchhhhhhhhccCccchHHHHhhccCEEEEEEEECC-CCEEEEEEcCCCcEEe-eccccCCCCeEEEEchhhccCchhh
Confidence 9999999999999999999999999999999999988 789999997 787653 3467789999999999999999999
Q ss_pred h-cccCCchhhhhHHHHHHHHHhhCCCeEEEEEEC---CeeeEEEEcCCCCCHHHHHHHHhChhhhcccEEeeeecc---
Q 012406 178 K-TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH---GAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEY--- 250 (464)
Q Consensus 178 k-~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~---g~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~--- 250 (464)
+ ++++.+.|+.+|.++|++||+++|+|+|+|.+. ++....+++.+..++.+++.++||..++++|++++...+
T Consensus 161 k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~ 240 (367)
T 3h4l_A 161 KEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNP 240 (367)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEEECGG
T ss_pred hhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHHHHHhCHHHHhccEEEeccccccc
Confidence 9 678888999999999999999999999999984 456678899999999999999999999999999887200
Q ss_pred ---------CC-----CCCceeEEEEEEeCCCCC---CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEE
Q 012406 251 ---------ND-----SSSFVFKMDGYVSNSNYV---AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMS 313 (464)
Q Consensus 251 ---------~~-----~~~~~~~i~G~is~~~~~---~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~ 313 (464)
.+ ....+++++||++.|.+. ..+..||+|||||||.++.|.++|+++|+.++ .++|||+||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~-~~~~P~~~L~ 319 (367)
T 3h4l_A 241 FKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFN-NVQFPAVFLN 319 (367)
T ss_dssp GCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTC-SSCBCCEEEE
T ss_pred ccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecCHHHHHHHHHHHHhcC-CCCCcEEEEE
Confidence 00 011569999999998753 34567999999999999999999999999986 4799999999
Q ss_pred EEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHhcCC
Q 012406 314 IVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSN 356 (464)
Q Consensus 314 I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L~~~~ 356 (464)
|+|||+.|||||||+|+||+|.+|+.|++.|+++|.++|..++
T Consensus 320 l~~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 320 LELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp EECCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcChHHcceeECCCCCEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999997654
No 3
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=100.00 E-value=1e-71 Score=573.09 Aligned_cols=333 Identities=29% Similarity=0.474 Sum_probs=270.3
Q ss_pred CccccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCC
Q 012406 19 PPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (464)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK 98 (464)
+++|++||++++++|+||++|.+|.++|+|||+||+||+|+.|.|.+..++...|+|.|||+||++++++.+|++|+|||
T Consensus 12 ~~~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 12 AKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp -----------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC------
T ss_pred chhhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhccccc
Confidence 45699999999999999999999999999999999999999999999876666899999999999999999999999999
Q ss_pred CccccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEE-cCceecccccccCCCceEEEEEeeeccchhhh
Q 012406 99 LSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (464)
Q Consensus 99 ~~~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~-~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRr 177 (464)
..+++|+..+.++||||+||+|++.+|+|+|+||+.++..+|++.|+ +|++.. .++++..+||+|+|+|||+|+|+|+
T Consensus 92 ~~~~~dl~~i~s~G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~GT~V~v~~LF~n~P~R~ 170 (365)
T 1h7s_A 92 IQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQ-KTPYPRPRGTTVSVQQLFSTLPVRH 170 (365)
T ss_dssp ----CCTTCSEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEE-EEECCCCSEEEEEEESTTTTSHHHH
T ss_pred cccccchhcccccCCCCchhhhhhhhccEEEEEccCCCcceEEEEEcCCCceEe-ecccCCCCCcEEEEeecccccchhh
Confidence 99888999999999999999999999999999999998889999997 787643 3456678999999999999999999
Q ss_pred h-cccCCchhhhhHHHHHHHHHhhCCCeEEEEEECC---eeeEEEEcCCCCCHHHHHHHHhChhhhcccEEeeeeccC--
Q 012406 178 K-TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG---AARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYN-- 251 (464)
Q Consensus 178 k-~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g---~~~~~l~t~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~-- 251 (464)
+ ++++...++.+|.+++++||+++|+++|+|.+++ +....+++++..++.+++.++||..++++|+++......
T Consensus 171 k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i~~~~~~~~ 250 (365)
T 1h7s_A 171 KEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDS 250 (365)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCCCCCHH
T ss_pred hhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHHHHhcChHhHhceEEEeccCCccc
Confidence 9 5688888999999999999999999999999876 346778998889999999999999999999998543200
Q ss_pred ----------CCCCceeEEEEEEeCCCCC---CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCC
Q 012406 252 ----------DSSSFVFKMDGYVSNSNYV---AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPP 318 (464)
Q Consensus 252 ----------~~~~~~~~i~G~is~~~~~---~kk~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p 318 (464)
+....+++++||++.+.+. ..+..||+|||||||.++.|.++|+++|+.++++ +||+++|+|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~l~~~p 329 (365)
T 1h7s_A 251 VCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRH-QYPFVVLNISVDS 329 (365)
T ss_dssp HHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHHTTCTT-CBCCEEEEEECCG
T ss_pred ccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecCHHHHHHHHHHHHhhCcc-CCcEEEEEEEeCh
Confidence 0001459999999999875 3456799999999999999999999999999987 8999999999999
Q ss_pred CceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 012406 319 EHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (464)
Q Consensus 319 ~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L~ 353 (464)
+.|||||||+|+||+|.+|+.|++.|+++|.+.|.
T Consensus 330 ~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 330 ECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp GGEEEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred HHcceEECCCcCEEEEcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998875
No 4
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=100.00 E-value=2.9e-70 Score=556.32 Aligned_cols=326 Identities=32% Similarity=0.496 Sum_probs=295.8
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCc
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~ 100 (464)
+|++||++++++|+|||+|.+|.++|+|||+||+||+|+.|.|.++.+|...|+|.|||+||+++|++.+|++|+|||+.
T Consensus 4 ~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~ 83 (333)
T 1b63_A 4 PIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIA 83 (333)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCC
T ss_pred cceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCcc
Confidence 49999999999999999999999999999999999999999999998776689999999999999999999999999998
Q ss_pred cccccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEEcCceecccccccCCCceEEEEEeeeccchhhhhcc
Q 012406 101 KYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTL 180 (464)
Q Consensus 101 ~~~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~V~~LF~n~PvRrk~l 180 (464)
+++|+..+.++||||+||+|++.+|+|+|+||+.++..+|++..+++....+..+++.++||+|+|+|||+|+|+|++++
T Consensus 84 ~~~d~~~~~~~G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~GT~V~v~~Lf~n~P~r~kfl 163 (333)
T 1b63_A 84 SLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFL 163 (333)
T ss_dssp SHHHHHTCCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEESTTTTCHHHHHTC
T ss_pred ccchhhhccccCccccchhhhhcCCcEEEEEecCCCceEEEEEEcCCcceEeeecccCCCCCEEEEecccccchhhhhhh
Confidence 88899989999999999999999999999999998888999844444322234556678999999999999999999999
Q ss_pred cCCchhhhhHHHHHHHHHhhCCCeEEEEEECCeeeEEEEc-CCCCCHHHHHHHHhChhhhcccEEeeeeccCCCCCceeE
Q 012406 181 QNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHS-IATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFK 259 (464)
Q Consensus 181 k~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~~~~l~t-~~~~s~~~~i~~IfG~~va~~L~~i~~~~~~~~~~~~~~ 259 (464)
++...++.+|.+++++||+++|+++|+|.++|+....+.. ....++.+++..+||..++.++++++.+. .+++
T Consensus 164 k~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~~------~~~~ 237 (333)
T 1b63_A 164 RTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQH------GDLT 237 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTEEEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEE------TTEE
T ss_pred ccHHHHHHHHHHHHHHHhccCCCcEEEEEECCEEEEecCCCCCCchHHHHHHHHhChhhHhheEEEEecC------CCEE
Confidence 8888899999999999999999999999999875433321 12457889999999999999999998877 5599
Q ss_pred EEEEEeCCCCCC-C-CceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCCh
Q 012406 260 MDGYVSNSNYVA-K-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQ 337 (464)
Q Consensus 260 i~G~is~~~~~~-k-k~~~~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e 337 (464)
++||++.+.+.. + +..|++|||||+|.++.|.++|+++|+.+++++++|+++|+|+|||+.|||||||+|+||+|.+|
T Consensus 238 v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~ 317 (333)
T 1b63_A 238 LRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQS 317 (333)
T ss_dssp EEEEEECGGGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTH
T ss_pred EEEEEEcCccccCCCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCH
Confidence 999999998654 3 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 012406 338 ELIVEKIQSAVELKL 352 (464)
Q Consensus 338 ~~Ii~~I~~~l~~~L 352 (464)
+.|++.|+++|.+.|
T Consensus 318 ~~v~~~i~~~i~~~l 332 (333)
T 1b63_A 318 RLVHDFIYQGVLSVL 332 (333)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999887
No 5
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=2.3e-31 Score=275.40 Aligned_cols=309 Identities=15% Similarity=0.122 Sum_probs=228.2
Q ss_pred CccccccChhHHHhhcCCccccCH--HHHHHHHHHcchhc---C-CCeEEEEEeeCCeeEEEEEeCCCCCCccc------
Q 012406 19 PPKIHRLEESVVNRIAAGEVIQRP--VSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYED------ 86 (464)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vI~~~--~~avkELIeNSlDA---~-At~I~I~i~~~g~~~I~V~DNG~GI~~ed------ 86 (464)
...|+.|..-..-+.+.|.+|.+. .++|+|||+||+|| | |+.|.|+|+.+| .|+|.|||+|||.++
T Consensus 7 ~~~i~~L~gle~vr~RPgmYiGs~~~~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~ 84 (390)
T 1s16_A 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGV 84 (390)
T ss_dssp GGGCEECCTTHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTTCS
T ss_pred HHHcEEcchhHHHhhCCceeecCCcHHHHHHHHHHHHHHHHhcCCCCEEEEEEecCC--EEEEEECCCCcCcccccccCc
Confidence 457999999999999999999765 99999999999999 5 999999999877 699999999999999
Q ss_pred --HHHhHhh-cccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCceeccccc---cc-C
Q 012406 87 --LPILCER-HTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKA---CA-A 158 (464)
Q Consensus 87 --l~~l~~r-~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~~~~---~~-~ 158 (464)
++.++.+ |+|||+.+ |+.. .+.||||+||++++.+| .++|+|+..+ .+|++.|.+|....+.++ +. .
T Consensus 85 ~~~e~v~~~lhagsKf~~--~~~~-~sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g~~~~~ 159 (390)
T 1s16_A 85 PAVELILCRLHAGGKFSN--KNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGKR 159 (390)
T ss_dssp BHHHHHHHCTTEESCSSS--SSCS-SCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECCTT
T ss_pred chhhheeeeecccCCcCC--Cccc-ccCCccccchHHHHHhhcccEEEEEECC--cEEEEEEeCCcccccceecccccCC
Confidence 6776655 99999764 4444 49999999999999999 6999999754 589999999976443222 22 2
Q ss_pred CCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCee-eEEEEcCCCCCHHHHHHHHhChh
Q 012406 159 VKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYGVS 237 (464)
Q Consensus 159 ~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~-~~~l~t~~~~s~~~~i~~IfG~~ 237 (464)
++||+|+++ |.|+++ ++...++..|.+.|+++|+.||+++|.|.+.+.. ...|...+ .+.+.+..+++..
T Consensus 160 ~~GT~V~f~------Pd~~~F-~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~ 230 (390)
T 1s16_A 160 NTGTSVHFW------PDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD--GLNDYLAEAVNGL 230 (390)
T ss_dssp CCEEEEEEE------ECGGGS-SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSS--CHHHHHHHHHTTS
T ss_pred CCceEEEEE------ECcccc-CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEcCC--cHHHHHHHHhCCC
Confidence 789999997 888876 7777789999999999999999999999998732 24465554 4999999999863
Q ss_pred --hhcccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC-----h----HHHHHHHHHHHhc-CCCC
Q 012406 238 --VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----A----PLKRAVEIVYAAT-FPKA 305 (464)
Q Consensus 238 --va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~-----~----~L~kaI~~vy~~~-lpk~ 305 (464)
+..+++.++.+. .++.++++++.++.. ....++.|+|+|++.. . .|.++|++..... +.|.
T Consensus 231 ~~~~~~~i~~~~~~------~~~~ve~a~~~~~~~-~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~ 303 (390)
T 1s16_A 231 PTLPEKPFIGNFAG------DTEAVDWALLWLPEG-GELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR 303 (390)
T ss_dssp CCEEEEEEEEEEEC------SSEEEEEEEEECTTC-CCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCT
T ss_pred cccCCCcEEEEEee------CCEEEEEEEEeccCC-CCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 334566666544 458899999864222 2346899999999986 2 3444554443321 1121
Q ss_pred C----------CcEEEEEEEcCCCceecccCCCCCeEecCChhHH-HHHHHHHHHHHHh
Q 012406 306 S----------KPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELI-VEKIQSAVELKLR 353 (464)
Q Consensus 306 ~----------~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~I-i~~I~~~l~~~L~ 353 (464)
. .=.+++++.++.-..+ -.||...-=..-..+ -..+.+.|..+|.
T Consensus 304 ~~~l~~~dvregl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~ 359 (390)
T 1s16_A 304 GVKLSAEDIWDRCAYVLSVKMQDPQFA---GQTKERLSSRQCAAFVSGVVKDAFILWLN 359 (390)
T ss_dssp TCCCCHHHHHTTEEEEEEEEESSCCBS---STTCCCBCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHhhccEEEEEeecCCCCcc---ccccchhcChhHHHHHHHHHHHHHHHHHH
Confidence 1 1267899998844333 356655322222222 2355555555554
No 6
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.98 E-value=1.1e-30 Score=268.38 Aligned_cols=297 Identities=12% Similarity=0.066 Sum_probs=228.7
Q ss_pred hHHHhhcCCcccc-----CHHHHHHHHHHcchhc----CCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCC
Q 012406 28 SVVNRIAAGEVIQ-----RPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (464)
Q Consensus 28 ~v~~~i~ag~vI~-----~~~~avkELIeNSlDA----~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK 98 (464)
--.-|.+.|.+|. .|.++|+|||+||+|| +|+.|.|+|+.+| .|+|.|||+|||. | .++.+|+|||
T Consensus 12 lE~vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g--~I~V~DnGrGIp~-e--~v~~lhagsK 86 (369)
T 3cwv_A 12 VENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG--SIALFCTSRTVTA-E--NLVRVATGAG 86 (369)
T ss_dssp HHHHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEEEESSCCH-H--HHHHHHTTTT
T ss_pred hHHHHhCCceEEcCCCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC--EEEEEECCCCcCH-h--HeeeeecCCC
Confidence 4446677888885 5899999999999998 8999999999887 6999999999999 4 3449999999
Q ss_pred CccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCce------eccccc--ccCCCceEEEEEee
Q 012406 99 LSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM------ESEPKA--CAAVKGTQIMVENL 169 (464)
Q Consensus 99 ~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~------~~~~~~--~~~~~GTtV~V~~L 169 (464)
+.+.+ ....|+++| ||++++.+| .++|+|+..+. +|++.|.+|.. ....++ ...++||+|+++
T Consensus 87 f~~~~---~~~~y~vsG-Gls~vnalSs~l~v~t~r~g~--~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~-- 158 (369)
T 3cwv_A 87 FLGRP---PGDGWGWDS-MLVVSLALSSRYQVDIWADGR--QWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV-- 158 (369)
T ss_dssp GGGSS---CCCSTTTTS-SHHHHHHTEEEEEEEEEETTE--EEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE--
T ss_pred cCCCc---ccccccccC-HHHHHHHhhceEEEEEEECCC--EEEEEEeCCcccccccccCCceEecccCCCCCEEEEE--
Confidence 87543 014577777 899999997 79999998653 89999999976 432232 225899999997
Q ss_pred eccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCe-eeEEEEcCCCCCHHHHHHHHhChh--hhcccEEee
Q 012406 170 FYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVS--VASNLVQLE 246 (464)
Q Consensus 170 F~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~-~~~~l~t~~~~s~~~~i~~IfG~~--va~~L~~i~ 246 (464)
|.|+++ ++...++..|.+.++++|+.+|+++|+|.+++. ....+...+ .+.+.+..++|.. +..+++.++
T Consensus 159 ----Pd~~~F-~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i~~~ 231 (369)
T 3cwv_A 159 ----PDATIF-EVLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPG--GVAQWAHVLTEARPQLHPEPVVFD 231 (369)
T ss_dssp ----ECTTTC-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTT--HHHHHHHHHHTTSCBSSSSCEEEE
T ss_pred ----ECHHHh-CCccccHHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCc--hHHHHHHHHhcCCcccCCCcEEEE
Confidence 999887 777889999999999999999999999999872 234566655 3899999999976 555677777
Q ss_pred eeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC-----hHHHHHHHHHHHhcCCCCC----------CcEEE
Q 012406 247 ASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATFPKAS----------KPFIY 311 (464)
Q Consensus 247 ~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~-----~~L~kaI~~vy~~~lpk~~----------~Pf~~ 311 (464)
.+. .++.++++++.+. ..+..++.|+|+|++.. ..++.+|.++|+.|+.+.. .=.++
T Consensus 232 ~~~------~~i~ve~a~~~~~--~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k~~~~~l~~~dvregl~av 303 (369)
T 3cwv_A 232 FTW------DGLRVQCALQWCE--DEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAI 303 (369)
T ss_dssp EEE------TTEEEEEEEEEBS--SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEE
T ss_pred Eec------CCEEEEEEEEecC--CCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHhhcCCCcCHHHHhhccEEE
Confidence 655 3588999998653 22456899999999998 8899999999999883211 12678
Q ss_pred EEEEcCCCc--eecccCCCCCeEecCChhHH-HHHHHHHHHHHHhcC
Q 012406 312 MSIVLPPEH--VDVNVHPTKREVSLLNQELI-VEKIQSAVELKLRQS 355 (464)
Q Consensus 312 L~I~i~p~~--vDVNVhPtK~eV~F~~e~~I-i~~I~~~l~~~L~~~ 355 (464)
+++.++.-. . --.||...-=..-..+ -+.+.+.|..+|...
T Consensus 304 isvk~~~P~~~F---egQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 347 (369)
T 3cwv_A 304 VAVSGPRRQMAF---AGPTKELLAIPGLEEAIRKQLQPLFIELLREH 347 (369)
T ss_dssp EEEECCGGGCCB---SSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred EEeccCCcchhc---cccccchhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 999988333 2 2467766543333333 356777777777654
No 7
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.97 E-value=8.8e-31 Score=270.96 Aligned_cols=309 Identities=15% Similarity=0.171 Sum_probs=228.3
Q ss_pred CccccccChhHHHhhcCCcccc------CHHHHHHHHHHcchhc---C-CCeEEEEEeeCCeeEEEEEeCCCCCCccc--
Q 012406 19 PPKIHRLEESVVNRIAAGEVIQ------RPVSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYED-- 86 (464)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vI~------~~~~avkELIeNSlDA---~-At~I~I~i~~~g~~~I~V~DNG~GI~~ed-- 86 (464)
...|+.|..-..-+.++|.+|. .|.++|+|||+||+|| | |+.|.|+|+.+| .|+|.|||+|||.++
T Consensus 6 ~~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~ 83 (391)
T 1ei1_A 6 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHP 83 (391)
T ss_dssp GGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSBCT
T ss_pred HHHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC--EEEEEECCCCcccCccc
Confidence 4579999999999999999995 7899999999999999 6 999999999877 699999999999998
Q ss_pred ------HHHhH-hhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCceecccc--cc
Q 012406 87 ------LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--AC 156 (464)
Q Consensus 87 ------l~~l~-~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~~~--~~ 156 (464)
++.++ .+|+|||+.+ |... .+.||||+||++++.+| .++|+|+..+ .+|++.|.+|....+.+ ..
T Consensus 84 ~~~~~~~elv~~~lhagsKf~~--~~~~-vSgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~~~ 158 (391)
T 1ei1_A 84 EEGVSAAEVIMTVLHAGGKFDD--NSYK-VSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGE 158 (391)
T ss_dssp TTSSBHHHHHHHSTTEESCSSS--SSCS-SCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEEE
T ss_pred ccCcchHHHhheeccccCCcCC--Cccc-ccCCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEcCCcccccceeccC
Confidence 44454 5899999864 4444 49999999999999999 6999999755 58999999997643221 12
Q ss_pred cCCCceEEEEEeeeccchhhhhcccC-CchhhhhHHHHHHHHHhhCCCeEEEEEECCee-eEEEEcCCCCCHHHHHHHHh
Q 012406 157 AAVKGTQIMVENLFYNMIARRKTLQN-SSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVY 234 (464)
Q Consensus 157 ~~~~GTtV~V~~LF~n~PvRrk~lk~-~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~-~~~l~t~~~~s~~~~i~~If 234 (464)
..++||+|+++ |.|+++ ++ ...++..|.+.|+++|+.||+++|.|.+.... ...|...+ .+.+.+..++
T Consensus 159 ~~~~GT~V~f~------Pd~~~F-~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~ 229 (391)
T 1ei1_A 159 TEKTGTMVRFW------PSLETF-TNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG--GIKAFVEYLN 229 (391)
T ss_dssp CSCCEEEEEEE------ECTTTC-CSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS--HHHHHHHHHH
T ss_pred cCCCccEEEEE------EChhhh-CCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEcCc--hHHHHHHHHc
Confidence 35899999997 999886 66 67789999999999999999999999997632 23455554 3889999998
Q ss_pred Chh--hhcccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCCh---------HHHHHHHHHHHhc--
Q 012406 235 GVS--VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAAT-- 301 (464)
Q Consensus 235 G~~--va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~~---------~L~kaI~~vy~~~-- 301 (464)
+.. +..+++.++.+. .++.+++++..+.. ....++.|+|+|++..- .|.++|++..+..
T Consensus 230 ~~~~~~~~~~i~~~~~~------~~i~veva~~~~~~--~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l 301 (391)
T 1ei1_A 230 KNKTPIHPNIFYFSTEK------DGIGVEVALQWNDG--FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 301 (391)
T ss_dssp HTSCBSSSCCEEEEEEE------TTEEEEEEEEEBSS--CCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCCcccccccEEEEEec------CCEEEEEEEEccCC--CCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 765 445677776554 35889999986532 23458999999999863 3445555443321
Q ss_pred CCC----------CCCcEEEEEEEcCCCceecccCCCCCeEecCChhH-HHHHHHHHHHHHHhc
Q 012406 302 FPK----------ASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEL-IVEKIQSAVELKLRQ 354 (464)
Q Consensus 302 lpk----------~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~-Ii~~I~~~l~~~L~~ 354 (464)
+.+ ...=++++++.++.-..+ -.||...-=..-.. +-..+.+.|..+|..
T Consensus 302 ~k~~~~~~~~~dvregl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~ 362 (391)
T 1ei1_A 302 SKKAKVSATGDDAREGLIAVVSVKVPDPKFS---SQTKDKLVSSEVKSAVEQQMNELLAEYLLE 362 (391)
T ss_dssp HHHHCCCCCHHHHTTTEEEEEEEECSSCCBS---STTCCSBCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCccCHHHHhhccEEEEEEecCCCCcC---CcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 111 123378899998844333 35665432111122 234555556555543
No 8
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.97 E-value=4.3e-31 Score=250.41 Aligned_cols=167 Identities=20% Similarity=0.350 Sum_probs=125.2
Q ss_pred hhcCCccccC--HHHHHHHHHHcchhc---C-CCeEEEEEeeCCeeEEEEEeCCCCCCcccH--------HH-hHhhccc
Q 012406 32 RIAAGEVIQR--PVSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYEDL--------PI-LCERHTT 96 (464)
Q Consensus 32 ~i~ag~vI~~--~~~avkELIeNSlDA---~-At~I~I~i~~~g~~~I~V~DNG~GI~~edl--------~~-l~~r~~T 96 (464)
|.++|.+|.+ |.++|+|||+||+|| | |+.|.|.++.+| .|+|.|||+||+.+++ +. ++.+|+|
T Consensus 6 r~rpgmyig~~~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hat 83 (201)
T 3fv5_A 6 RRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 83 (201)
T ss_dssp HHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---
T ss_pred ccCCccEECCCChhhhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--EEEEEECCCCcCcccccccCcchhheeeeeeccc
Confidence 4577888865 599999999999999 5 999999998777 6999999999999984 45 5899999
Q ss_pred CCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCceecccc---ccc-CCCceEEEEEeeec
Q 012406 97 SKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK---ACA-AVKGTQIMVENLFY 171 (464)
Q Consensus 97 SK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~~~---~~~-~~~GTtV~V~~LF~ 171 (464)
||+.+ |+... ++||||+||+|++.+| +++|+|++.+. .|++.|.+|+...+.+ +++ ...||+|+|.
T Consensus 84 sK~~~--~~~~~-s~GfrGeglssinalS~~l~v~t~~~g~--~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~---- 154 (201)
T 3fv5_A 84 GKFSN--KNYQF-SGGLHGVGISVVNALSKRVEVNVRRDGQ--VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW---- 154 (201)
T ss_dssp ---------------------CHHHHHTEEEEEEEEEETTE--EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE----
T ss_pred cCcCC--Ccccc-cCcccceecchhhcccceEEEEEEecCc--eEEEEEeCCEEcccceecccCCCCCCCeEEEEE----
Confidence 99874 55554 8999999999999999 79999998653 6999999998743322 221 6799999994
Q ss_pred cchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECC
Q 012406 172 NMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (464)
Q Consensus 172 n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g 212 (464)
|+|+++ ++...++..|.++|++||++||+|+|+|.++.
T Consensus 155 --Pdr~~F-~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r 192 (201)
T 3fv5_A 155 --PDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 192 (201)
T ss_dssp --ECGGGS-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred --ECHHHc-CCCccCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 999776 88888999999999999999999999999874
No 9
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.95 E-value=1e-26 Score=240.64 Aligned_cols=307 Identities=15% Similarity=0.149 Sum_probs=222.6
Q ss_pred ccccccChhHHHhhcCCccc-----cCHHHHHHHHHHcchhcC----CCeEEEEEeeCCeeEEEEEeCCCCCCcccHHH-
Q 012406 20 PKIHRLEESVVNRIAAGEVI-----QRPVSAVKELVENSLDAD----ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPI- 89 (464)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vI-----~~~~~avkELIeNSlDA~----At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~- 89 (464)
..|+.|.....-+.+.|.+| ..+.++|+|||+||+|+. ++.|.|.++.++ .|+|.|||+||+.++++.
T Consensus 6 ~~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~--~i~V~DnG~GIp~~~~~~~ 83 (390)
T 1kij_A 6 SAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEE 83 (390)
T ss_dssp -CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTT
T ss_pred HHCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCC--EEEEEEcCCCCCHHHhhhc
Confidence 47999999999999999999 557889999999999996 999999998776 699999999999999865
Q ss_pred -------hHh-hcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCceeccccc---cc
Q 012406 90 -------LCE-RHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKA---CA 157 (464)
Q Consensus 90 -------l~~-r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~~~~---~~ 157 (464)
++. .|++||+.. +. ...+.|++|+||+++..+| .++|+|+..+ .+|++.|.+|....+.++ +.
T Consensus 84 ~~~~~e~if~~~~~~~kf~~--~~-~~~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~~G~~~~~~~~~~~~~ 158 (390)
T 1kij_A 84 GKPAVEVIYNTLHSGGKFEQ--GA-YKVSGGLHGVGASVVNALSEWTVVEVFREG--KHHRIAFSRGEVTEPLRVVGEAP 158 (390)
T ss_dssp TEEHHHHHHHSSCEESGGGG--SS-CCCCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECG
T ss_pred cccchhhheeeeeecccccC--cc-ccccCCCCCcceeeecccccceEEEEecCC--cEEEEEEcCCcccccceeecccc
Confidence 664 578888642 22 2247899999999999999 5999999754 479999999976432222 22
Q ss_pred -CCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCee-eEEEEcCCCCCHHHHHHHHhC
Q 012406 158 -AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYG 235 (464)
Q Consensus 158 -~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~-~~~l~t~~~~s~~~~i~~IfG 235 (464)
.++||+|+++ |.|..+ ++...++..|.+.|+++|+.||+++|+|.+.+.. ...+...+ .+.+.+..+++
T Consensus 159 ~~~~GT~V~f~------Pd~~~F-~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~~~--Gl~~~v~~l~~ 229 (390)
T 1kij_A 159 RGKTGTRVTFK------PDPEIF-GNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKG--GVASFAKALAE 229 (390)
T ss_dssp GGCCEEEEEEE------ECHHHH-TTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCTT--HHHHHHHHHTT
T ss_pred CCCCCcEEEEE------EChHHh-CCccccHHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEcCC--cHHHHHHHHhC
Confidence 5799999996 888765 6666788999999999999999999999997632 24455554 48899999998
Q ss_pred hh--hhcccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC-----hHHHHHHHHHHHhc------C
Q 012406 236 VS--VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAAT------F 302 (464)
Q Consensus 236 ~~--va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~-----~~L~kaI~~vy~~~------l 302 (464)
.. +..+++.++.+. .++.++++++... .....++.|+|+|++.. .-++.++..++..| +
T Consensus 230 ~~~~~~~~~i~~~~~~------~~i~ve~a~~~~~--~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~ 301 (390)
T 1kij_A 230 GEDLLYEKPFLIRGTH------GEVEVEVGFLHTQ--GYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLN 301 (390)
T ss_dssp TSCBSCSSCEEEEEEE------TTEEEEEEEEEBS--SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCcCCCCcEEEEeec------CCeEEEEEEEecC--CCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCcc
Confidence 75 455677776555 3488999887532 22456899999999987 34555554444443 2
Q ss_pred CCC----------CCcEEEEEEEcCCCceecccCCCCCeEecCChhHH-HHHHHHHHHHHHh
Q 012406 303 PKA----------SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELI-VEKIQSAVELKLR 353 (464)
Q Consensus 303 pk~----------~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~I-i~~I~~~l~~~L~ 353 (464)
++. ..=.+++++.++.-..+ -.||...-=.+-..+ -..+.+.|..+|.
T Consensus 302 k~~~~~l~~~dvregl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~ 360 (390)
T 1kij_A 302 KEKGPQPTGDDLLEGLYAVVSVKLPNPQFE---GQTKGKLLNPEAGTAVGQVVYERLLEILE 360 (390)
T ss_dssp CSSSCCCCTTTTTTTEEEEEEEECSSCCBC---STTCCSBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcCHHHHhhhcEEEEEeecCCCccc---ccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 221 12267889988843332 356654321111222 2345555555554
No 10
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.95 E-value=2e-27 Score=254.88 Aligned_cols=290 Identities=16% Similarity=0.198 Sum_probs=204.1
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcC----------------CC--eEEEEEeeCCeeEEEEEeCCCCC
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~----------------At--~I~I~i~~~g~~~I~V~DNG~GI 82 (464)
.|++|-+-+++.+. .+|..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||
T Consensus 12 ei~~Ll~ll~~~lY-----sn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGM 85 (559)
T 1y4s_A 12 EVKQLLHLMIHSLY-----SNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGM 85 (559)
T ss_dssp THHHHHHHHHHHTG-----GGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT-TEEEEEECSSCC
T ss_pred cHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC-cEEEEEECCCCC
Confidence 46677777776655 578899999999999998 54 6777777665 579999999999
Q ss_pred CcccHHHhHhhcccCCCccc-cc-----cccccccCcccchhHhhhhhc-eEEEEEEEcCC--ccEEEEEEEcCc-eecc
Q 012406 83 RYEDLPILCERHTTSKLSKY-ED-----LQSIKSMGFRGEALASMTYVG-HVTVTTITKGH--LHGYRVSYRDGV-MESE 152 (464)
Q Consensus 83 ~~edl~~l~~r~~TSK~~~~-~d-----l~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~--~~~~~~~~~~G~-~~~~ 152 (464)
+++|+...+.++++|+...| +. ...+.+.|++|+|++|+..+| +|+|+||+.+. ..+|++...+|. ...
T Consensus 86 t~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i- 164 (559)
T 1y4s_A 86 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTV- 164 (559)
T ss_dssp CHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEE-
T ss_pred CHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeEE-
Confidence 99999999999999986554 11 235689999999999999997 79999999873 678888776543 222
Q ss_pred cccc-cCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHH--hhCCCeEEE--------------EEECCeee
Q 012406 153 PKAC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHTNVSFS--------------CRKHGAAR 215 (464)
Q Consensus 153 ~~~~-~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yA--l~~p~v~f~--------------l~~~g~~~ 215 (464)
.++ ...+||+|++. | -+.+..++ +..+|.+++.+|| +.+| |.|. +.+.+ +
T Consensus 165 -~~~~~~~~GT~I~L~-L---k~d~~Efl-----e~~~I~~iv~kys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~--~ 231 (559)
T 1y4s_A 165 -ADITKEDRGTEITLH-L---REGEDEFL-----DDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKA--Q 231 (559)
T ss_dssp -EEECCCSCEEEEEEE-E---CTTCGGGS-----CHHHHHHHHHHHHTTCSSC-EEEEEEECSTTSCEEEEEECCCC--C
T ss_pred -eECCCCCCCeEEEEE-E---cchhhhcc-----hHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCC--c
Confidence 222 45799999997 2 12222222 2578999999999 8899 8883 22222 2
Q ss_pred EEEEcCCCCCHHHHHHHHhC---hhhhcccEEeeeeccCCCCCceeEEEEEEeCCCC-------CCCCceEEEEEcCccc
Q 012406 216 ADVHSIATSSRLDSIRTVYG---VSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNY-------VAKKTTMVLFVNDRLV 285 (464)
Q Consensus 216 ~~l~t~~~~s~~~~i~~IfG---~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~-------~~kk~~~~lFIN~R~V 285 (464)
..|..++..-..+.+...|+ ......|..++.+. + ..+.+.|++..|.. ..++..+.+|||+|+|
T Consensus 232 ~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~--e---g~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I 306 (559)
T 1y4s_A 232 ALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRV--E---GKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFI 306 (559)
T ss_dssp CGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECC--C---SSSCEEEEEEEESSCCTTCSSSSCCCCEEEEETTEEE
T ss_pred cceecCcccccHHHHHHHHHhhhhhhhcCeEEEEecc--C---CceEEEEEEEcCCcCcchhhhhcccCCeEEEEcCEEe
Confidence 34444444333446666665 24455677777765 2 24789998876652 1235568899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 012406 286 ECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (464)
Q Consensus 286 ~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~L 352 (464)
.+.. ..++|. -+.|+...++|..+|+||. ||. +.++.++..|++.|.+.+
T Consensus 307 ~d~~---------~~llP~---~l~fv~gvVDs~dlplNVS---RE~--lq~~~~l~~I~~~l~kkv 356 (559)
T 1y4s_A 307 MDDA---------EQFMPN---YLRFVRGLIDSSDLPLNVS---REI--LQDSTVTRNLRNALTKRV 356 (559)
T ss_dssp EEEE---------GGGSCG---GGTTCEEEEEESSSCTTCC---TTG--GGGCHHHHHHHHHHHHHH
T ss_pred ecch---------hhhChH---hHhheeEeeChhhCCCeeC---chh--hhhhHHHHHHHHHHHHHH
Confidence 8763 666665 1123445599999999996 554 667777777777665533
No 11
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.94 E-value=1.2e-27 Score=259.63 Aligned_cols=290 Identities=15% Similarity=0.184 Sum_probs=198.4
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcC----------------CC--eEEEEEeeCCeeEEEEEeCCCCC
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~----------------At--~I~I~i~~~g~~~I~V~DNG~GI 82 (464)
.|++|-+-+++.+.+ ++..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||
T Consensus 12 ei~~Ll~ll~~~lYs-----n~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGM 85 (624)
T 2ioq_A 12 EVKQLLHLMIHSLYS-----NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGM 85 (624)
T ss_dssp ---CCHHHHHHHHSS-----CTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred cHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC-cEEEEEECCCCC
Confidence 477788888877765 67889999999999998 54 6777776665 579999999999
Q ss_pred CcccHHHhHhhcccCCCccc----cc--cccccccCcccchhHhhhhhc-eEEEEEEEcC--CccEEEEEEEcCceeccc
Q 012406 83 RYEDLPILCERHTTSKLSKY----ED--LQSIKSMGFRGEALASMTYVG-HVTVTTITKG--HLHGYRVSYRDGVMESEP 153 (464)
Q Consensus 83 ~~edl~~l~~r~~TSK~~~~----~d--l~~~~t~GfRGeALaSis~vs-~l~I~Srt~~--~~~~~~~~~~~G~~~~~~ 153 (464)
+++|+...+.++++|+...| .+ ...+.+.|++|+|++|+..+| +|+|+||+.+ +..+|++...+|.. ...
T Consensus 86 t~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~-~~i 164 (624)
T 2ioq_A 86 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE-YTV 164 (624)
T ss_dssp CHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC-CEE
T ss_pred CHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe-EEE
Confidence 99999998889999986544 11 235678999999999999999 7999999987 56788887765432 111
Q ss_pred ccc-cCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHH--hhCCCeEEE--------------EEECCeeeE
Q 012406 154 KAC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHTNVSFS--------------CRKHGAARA 216 (464)
Q Consensus 154 ~~~-~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yA--l~~p~v~f~--------------l~~~g~~~~ 216 (464)
.++ ...+||+|++. |- +.+..++ +..+|.+++.+|| +.+| |.|. +.+.+ +.
T Consensus 165 ~~~~~~~~GT~I~L~-Lk---~d~~Efl-----~~~~i~~ivkkys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~--~~ 232 (624)
T 2ioq_A 165 ADITKEDRGTEITLH-LR---EGEDEFL-----DDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKA--QA 232 (624)
T ss_dssp EEECCSSSEEEEEEE-EC---TTCGGGG-----CHHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCC--SC
T ss_pred EECCCCCCCeEEEEE-Ec---chhhhcc-----hHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCC--cc
Confidence 222 45799999997 20 1122222 2578999999999 8899 8883 22222 23
Q ss_pred EEEcCCCCCHHHHHHHHhCh---hhhcccEEeeeeccCCCCCceeEEEEEEeCCCC-------CCCCceEEEEEcCcccC
Q 012406 217 DVHSIATSSRLDSIRTVYGV---SVASNLVQLEASEYNDSSSFVFKMDGYVSNSNY-------VAKKTTMVLFVNDRLVE 286 (464)
Q Consensus 217 ~l~t~~~~s~~~~i~~IfG~---~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~~-------~~kk~~~~lFIN~R~V~ 286 (464)
.|..++..-..+.+...|+. .....|..++++. + ..+.+.|++..|.. ..++..+.+|||+|+|.
T Consensus 233 lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~--e---g~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~ 307 (624)
T 2ioq_A 233 LWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRV--E---GKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIM 307 (624)
T ss_dssp TTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEE--E---SSSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEE
T ss_pred ceEecCccchHHHHHHHHHhhccchhcCeEEEEecc--c---ceEEEEEEEEeCCcCccchhhhcccCCeEEEECCEEee
Confidence 44444443334466666655 4455676676665 1 24789999987752 12455688999999998
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHH
Q 012406 287 CAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELK 351 (464)
Q Consensus 287 ~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~~ 351 (464)
+.. ..++|. | +.|+...++|..+|+||. ||. +.++.++..|++.|.+.
T Consensus 308 d~~---------~~llP~--~-l~fv~gvVDs~dl~lNVS---RE~--LQ~~~~l~~I~~~l~kk 355 (624)
T 2ioq_A 308 DDA---------EQFMPN--Y-LRFVRGLIDSSDLPLNVS---REI--LQDSTVTRNLRNALTKR 355 (624)
T ss_dssp EEE---------CSSSCT--T-STTCEEEEEESSSCTTCC---HHH--HHHSSHHHHHHHHHHHH
T ss_pred cch---------hccchh--h-hhhEEEEECHhhCCCccC---chh--hhhhHHHHHHHHHHHHH
Confidence 765 566775 1 224455699999999995 554 55666666666655443
No 12
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.93 E-value=3.1e-25 Score=212.81 Aligned_cols=182 Identities=20% Similarity=0.238 Sum_probs=139.7
Q ss_pred CCccccccChhHHHhhcCCcccc------CHHHHHHHHHHcchhc----CCCeEEEEEeeCCeeEEEEEeCCCCCCcccH
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQ------RPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDL 87 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~------~~~~avkELIeNSlDA----~At~I~I~i~~~g~~~I~V~DNG~GI~~edl 87 (464)
....|+.|..--.-|.+.|.+|. .|.++|+|||+||+|| +|+.|.|+|+.+| .|+|.|||+|||.++.
T Consensus 6 ~~~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g--~i~V~DnGrGIp~~~~ 83 (220)
T 4duh_A 6 DSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIH 83 (220)
T ss_dssp ---------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS--CEEEEECSSCCCCSEE
T ss_pred ChhHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--cEEEEECCcCcccccc
Confidence 34579999999999999999973 4789999999999999 8999999999876 5999999999999975
Q ss_pred --------HHh-HhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCceecccc--c
Q 012406 88 --------PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--A 155 (464)
Q Consensus 88 --------~~l-~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~~~--~ 155 (464)
+.+ +..|++||+. |.....+.||+|+|+++++.+| .++|+++..+ ..|++.|.+|....+.+ +
T Consensus 84 ~~~~~~~~e~i~t~lhag~Kfd---~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~~g 158 (220)
T 4duh_A 84 PEEGVSAAEVIMTVLHAGGKFD---DNSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTG 158 (220)
T ss_dssp TTTTEEHHHHHHHSTTCSSCCC---TTC--------CCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSSCEEEE
T ss_pred cccCcchhhheeeecccCCCcC---CCccccccCccceecchhcccccceEEEEEECC--EEEEEEecCCcCcCCceecc
Confidence 343 5899999975 3344589999999999999999 7999998866 46999999998754332 3
Q ss_pred ccCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECC
Q 012406 156 CAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (464)
Q Consensus 156 ~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g 212 (464)
.+..+||+|++. |.+.++.+....+++.+.+.|+++|..+|+++|.|.+..
T Consensus 159 ~~~~~GT~V~F~------Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 209 (220)
T 4duh_A 159 ETEKTGTMVRFW------PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 (220)
T ss_dssp ECSCCEEEEEEE------ECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred ccCCCCcEEEEE------ECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 457899999985 888877655467889999999999999999999999864
No 13
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.92 E-value=2.7e-25 Score=242.09 Aligned_cols=285 Identities=16% Similarity=0.218 Sum_probs=179.8
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcC----------------CC--eEEEEEeeCCeeEEEEEeCCCCC
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~----------------At--~I~I~i~~~g~~~I~V~DNG~GI 82 (464)
.|++|-+-+++.+.+ ++..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||
T Consensus 30 ei~~Ll~li~~sLYs-----n~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGM 103 (666)
T 2o1u_A 30 EVNRMMKLIINSLYK-----NKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGM 103 (666)
T ss_dssp ----CCSSSTTTTSS-----SCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred hHHHHHHHHHHhccC-----CchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC-CEEEEEECCCCC
Confidence 467777777766554 66789999999999998 64 5666666655 579999999999
Q ss_pred CcccHHHhHhhcccC-------CCccc-----cccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCce
Q 012406 83 RYEDLPILCERHTTS-------KLSKY-----EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM 149 (464)
Q Consensus 83 ~~edl~~l~~r~~TS-------K~~~~-----~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~ 149 (464)
+++|+...+.++++| |+... .|+.. .|..|.+++|...+| +|+|+||+.++ .+|++..++|..
T Consensus 104 t~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~---IGqFGvGfySaf~vAdkV~V~Sr~~~~-~~~~W~s~gg~~ 179 (666)
T 2o1u_A 104 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSEL---IGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDSNEF 179 (666)
T ss_dssp CHHHHHHHTTC----------------------------------CTTGGGGGTEEEEEEEEECTTS-CCEEEEESSSCC
T ss_pred CHHHHHHHHhhhcccccHHHHHHhhhcccccccchhh---ccCCCcHHHhHHHhcCEEEEEEeeCCC-ceEEEEEeCCeE
Confidence 999999988899888 55432 34444 455555555655565 79999999875 478877666655
Q ss_pred eccccc--ccCCCceEEEEEeeeccchhhhhcccCCchh---hhhHHHHHHHHH--hhCCCeEEEEE-------------
Q 012406 150 ESEPKA--CAAVKGTQIMVENLFYNMIARRKTLQNSSDD---YTKIVDLLSRMA--IHHTNVSFSCR------------- 209 (464)
Q Consensus 150 ~~~~~~--~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e---~~~I~~~l~~yA--l~~p~v~f~l~------------- 209 (464)
...+.. ....+||+|++. ++....| ..+|.+++.+|| +.+| |.|...
T Consensus 180 ti~~~~~~~~~~~GT~I~L~------------Lk~d~~Efle~~~I~~ivkkys~fi~~P-I~~~~~~~~~~~~~~~~~~ 246 (666)
T 2o1u_A 180 SVIADPRGNTLGRGTTITLV------------LKEEASDYLELDTIKNLVKKYSQFINFP-IYVWSSKTGGGGKTVWDWE 246 (666)
T ss_dssp EEEECTTCCSSSSEEEEEEE------------ECTTTTTSSSTTHHHHHHHHHSTTCCSC-EEEEECC-------CCEEE
T ss_pred EEEecccCCCCCCCeEEEEE------------EccchhhhccHHHHHHHHHHHHhhCCCc-eEEeccccccccccccceE
Confidence 322211 135789999997 2222223 578999999999 8888 777331
Q ss_pred ECCeeeEEEEcCCCCCHHHHHHHHhC---hhhhcccEEeeeeccCCCCCceeEEEEEEeCCC------CCC----CCceE
Q 012406 210 KHGAARADVHSIATSSRLDSIRTVYG---VSVASNLVQLEASEYNDSSSFVFKMDGYVSNSN------YVA----KKTTM 276 (464)
Q Consensus 210 ~~g~~~~~l~t~~~~s~~~~i~~IfG---~~va~~L~~i~~~~~~~~~~~~~~i~G~is~~~------~~~----kk~~~ 276 (464)
..++.+..|..++..-..+.+...|+ ......|..++++. + ..+.+.|++..|. +.. ++..+
T Consensus 247 ~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~--e---g~~~~~gll~iP~~~p~d~~~~~~~~~~~~i 321 (666)
T 2o1u_A 247 LMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTA--E---GEVTFKSILFVPTSAPRGLFDEYGSKKSDYI 321 (666)
T ss_dssp ECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEE--C---SSSCEEEEEEECSSCCC------------CE
T ss_pred EEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecc--c---CcEEEEEEEEcCCCCchhhhhhccccccCCe
Confidence 11122333444444333457777776 34456677777765 2 3478899987665 221 35567
Q ss_pred EEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHH
Q 012406 277 VLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 350 (464)
Q Consensus 277 ~lFIN~R~V~~~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~Ii~~I~~~l~~ 350 (464)
.+|||+|+|.+.. ..++|. | +.|+...++|..+|+||. ||. +.++.++..|++.|.+
T Consensus 322 ~LYVn~vfI~d~~---------~~llP~--~-l~FvkGvVDs~dLplNVS---RE~--LQ~~~~l~~I~~~l~k 378 (666)
T 2o1u_A 322 KLYVRRVFITDDF---------HDMMPK--Y-LNFVKGVVDSDDLPLNVS---RET--LQQHKLLKVIRKKLVR 378 (666)
T ss_dssp EEEETTEEEESCC---------CTTSCG--G-GTTCEEEEEESSSCSSSC---HHH--HHTCHHHHHHHHHHHH
T ss_pred EEEEcCeEeeCch---------hhhhHH--H-HHHeeeeeCHhhCCCccc---chh--hccCHHHHHHHHHHHH
Confidence 8999999998764 556665 1 234566899999999996 554 5666777777766554
No 14
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.91 E-value=2.6e-25 Score=214.38 Aligned_cols=164 Identities=20% Similarity=0.275 Sum_probs=132.5
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCC----------------eEEEEEe-eCCeeEEEEEeCCCCCC
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT----------------SINVVVK-DGGLKLIQVSDDGHGIR 83 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At----------------~I~I~i~-~~g~~~I~V~DNG~GI~ 83 (464)
.|++|.+-+++.|.++. ..+|+|||+||+||+|+ .+.|.|. +.+...|+|.|||+||+
T Consensus 17 ei~~ll~ll~~~lYs~~-----~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs 91 (228)
T 3t0h_A 17 EIAQLMSLIINTFYSNK-----EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT 91 (228)
T ss_dssp HHHHHHHHHHHSCCSCT-----THHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCC
T ss_pred eHHHHHHHHHHhhcCCc-----HHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCC
Confidence 48889999999888864 67999999999999875 3455543 33455799999999999
Q ss_pred cccHHHhHhhcccCCCccccc-c---ccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCce-ecccc-cc
Q 012406 84 YEDLPILCERHTTSKLSKYED-L---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM-ESEPK-AC 156 (464)
Q Consensus 84 ~edl~~l~~r~~TSK~~~~~d-l---~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~-~~~~~-~~ 156 (464)
++|+...+.++++||...|.| | ..+.++||||+||+|++.+| +|+|+||+.+ ..||++.+.+|.. ...+. +.
T Consensus 92 ~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g~~~~~v~~~~~~ 170 (228)
T 3t0h_A 92 KADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGE 170 (228)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSS
T ss_pred HHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcCCceEEEeecCCC
Confidence 999999999999999887654 4 46789999999999999999 7999999986 4689988876643 22221 23
Q ss_pred cCCCceEEEEEeeeccchhhhhcccCCchhh---hhHHHHHHHHH--hhCC
Q 012406 157 AAVKGTQIMVENLFYNMIARRKTLQNSSDDY---TKIVDLLSRMA--IHHT 202 (464)
Q Consensus 157 ~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~---~~I~~~l~~yA--l~~p 202 (464)
+..+||+|+|+ ||+...|+ .+|.+++.+|| |.+|
T Consensus 171 ~~~~GT~I~v~------------Lk~~~~E~~e~~~i~~iv~~~a~~l~~P 209 (228)
T 3t0h_A 171 PMGRGTKVILH------------LKEDQTEYLEERRIKEIVKKHSQFIGYP 209 (228)
T ss_dssp CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHSTTCSSC
T ss_pred CCCCCcEEEEE------------ECCchhhhhhHHHHHHHHHHHHhhCCCC
Confidence 56899999998 55555566 78999999999 8888
No 15
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.91 E-value=4e-23 Score=213.98 Aligned_cols=270 Identities=13% Similarity=0.123 Sum_probs=182.8
Q ss_pred cccccChhHHHhhcCCccc---------------------------cCHHHHHHHHHHcchhcC-----CCeEEEEEeeC
Q 012406 21 KIHRLEESVVNRIAAGEVI---------------------------QRPVSAVKELVENSLDAD-----ATSINVVVKDG 68 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI---------------------------~~~~~avkELIeNSlDA~-----At~I~I~i~~~ 68 (464)
.++.|..--.-|.+.|.+| ..+.++|+|||+||+||+ |+.|.|+|+.+
T Consensus 5 ~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~ 84 (400)
T 1zxm_A 5 IYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPE 84 (400)
T ss_dssp HSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT
T ss_pred hheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECC
Confidence 5778888777888888886 356899999999999998 99999999975
Q ss_pred CeeEEEEEeCCCCCCccc--------HHHhH-hhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCcc
Q 012406 69 GLKLIQVSDDGHGIRYED--------LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLH 138 (464)
Q Consensus 69 g~~~I~V~DNG~GI~~ed--------l~~l~-~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~ 138 (464)
+ ..|+|.|||+|||.++ ++.++ .+|+|||+.+ |+..+ +.||||+|+++++.+| .++|+++...+..
T Consensus 85 ~-~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~--~~ykv-SgGlhGvGlsvVnAlS~~l~v~v~~~~~g~ 160 (400)
T 1zxm_A 85 N-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD--DEKKV-TGGRNGYGAKLCNIFSTKFTVETASREYKK 160 (400)
T ss_dssp T-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCG--GGCCC-CSCCSSCHHHHHHHTEEEEEEEEEETTTTE
T ss_pred C-CEEEEEECCCcccCccccccCccchhheeeeecccCCCCC--Ccccc-cCCccccceeeeEEeccceEEEEecCCCCc
Confidence 3 2699999999999998 55555 4899999864 55555 9999999999999997 7999998866667
Q ss_pred EEEEEEEcCceecccc---cccCCCceEEEEEeeeccchhhhhcccCCchhhhh---HHHHHHHHHhhCCCeEEEEEECC
Q 012406 139 GYRVSYRDGVMESEPK---ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTK---IVDLLSRMAIHHTNVSFSCRKHG 212 (464)
Q Consensus 139 ~~~~~~~~G~~~~~~~---~~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~---I~~~l~~yAl~~p~v~f~l~~~g 212 (464)
+|+..|.+|....... ++..++||+|++. |.|+.+ +.....++. |.+.++++|+.||+++|.|.+..
T Consensus 161 ~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~------Pd~~iF-~~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der 233 (400)
T 1zxm_A 161 MFKQTWMDNMGRAGEMELKPFNGEDYTCITFQ------PDLSKF-KMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNK 233 (400)
T ss_dssp EEEEEEETTTTEECCCEEEECCSCCEEEEEEE------ECGGGG-TCSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEE
T ss_pred EEEEEEccCccccCcceeccCCCCCccEEEEE------EChHHh-CceeecHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Confidence 8999999884322222 2235689999997 888776 433223333 88999999999999999997522
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhChhhh--cccEEeeeeccCCCCCceeEEEEEEeCCCCCCCCceEEEEEcCcccCC---
Q 012406 213 AARADVHSIATSSRLDSIRTVYGVSVA--SNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC--- 287 (464)
Q Consensus 213 ~~~~~l~t~~~~s~~~~i~~IfG~~va--~~L~~i~~~~~~~~~~~~~~i~G~is~~~~~~kk~~~~lFIN~R~V~~--- 287 (464)
. +...+.+-+..+....-. .....+.... +. ..+.+.-..+...| .++-|+|+-+-..
T Consensus 234 ~--------~~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~--~~--~~~eva~~~~~~~~-----~~~sfvN~I~T~~GGT 296 (400)
T 1zxm_A 234 L--------PVKGFRSYVDMYLKDKLDETGNSLKVIHEQ--VN--HRWEVCLTMSEKGF-----QQISFVNSIATSKGGR 296 (400)
T ss_dssp C--------CCCSHHHHHHHHHTTCBCSSSSBCCCEEEE--EE--TTEEEEEEECSSSC-----EEEEEETTEECTTEEH
T ss_pred C--------CCCCHHHHHHHHhcCCCccCCCCcceEEee--cC--cEEEEEEEEcCCCc-----eEEEEeCCccCCCCCc
Confidence 1 124566666655433210 1111111111 01 12333222221122 3689999988754
Q ss_pred --hHHHHHHHHHHHhcCCCCC-------------CcEEEEEEEcCC
Q 012406 288 --APLKRAVEIVYAATFPKAS-------------KPFIYMSIVLPP 318 (464)
Q Consensus 288 --~~L~kaI~~vy~~~lpk~~-------------~Pf~~L~I~i~p 318 (464)
.-++.+|.++...|..+.. .=.++|++.++.
T Consensus 297 H~~gfr~altr~i~~y~~k~~k~~~~l~~~Dvregl~avisvkv~~ 342 (400)
T 1zxm_A 297 HVDYVADQIVTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIEN 342 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC----CCCHHHHHTTEEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcCHHHHhhCeEEEEEEecCC
Confidence 3455555555555433211 126778888774
No 16
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.90 E-value=1e-23 Score=202.88 Aligned_cols=181 Identities=20% Similarity=0.249 Sum_probs=139.5
Q ss_pred CCccccccChhHHHhhcCCccccC-----HHHHHHHHHHcchhc----CCCeEEEEEeeCCeeEEEEEeCCCCCCccc--
Q 012406 18 EPPKIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYED-- 86 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI~~-----~~~avkELIeNSlDA----~At~I~I~i~~~g~~~I~V~DNG~GI~~ed-- 86 (464)
....|+.|..--.-+.+.|.+|.+ +.++|+|+|+||+|+ +|+.|.|.++.+| .|+|.|||+|||.++
T Consensus 12 ~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g--~i~V~DnG~GIp~~~h~ 89 (226)
T 4emv_A 12 NDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG--SLTVQDHGRGMPTGMHA 89 (226)
T ss_dssp -----CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCG
T ss_pred ChhhcEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC--eEEEEEcCCCccccccc
Confidence 445799999999999999999866 789999999999999 8999999999776 599999999999998
Q ss_pred -----HHHhH-hhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcC-ceecccc---c
Q 012406 87 -----LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG-VMESEPK---A 155 (464)
Q Consensus 87 -----l~~l~-~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G-~~~~~~~---~ 155 (464)
++.++ ..|++||+ +|.....+.||+|+|+++++.+| .++|+++..+ ..|++.|.+| ....+.+ +
T Consensus 90 ~~~~~~e~v~t~lhag~Kf---d~~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g--~~~~q~f~~Gg~~~~~l~~ig~ 164 (226)
T 4emv_A 90 MGIPTVEVIFTILHAGGKF---GQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDG--AVYKQRFENGGKPVTTLKKIGT 164 (226)
T ss_dssp GGCBHHHHHHHCBC-----------------CGGGCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTTEESSCSEEEEE
T ss_pred cCceehheeEEeecccCcc---CccceEeccccccccchhhhhcccceEEEEEeCC--cEEEEEECCCCEEcCCceEecc
Confidence 77654 79999995 45556789999999999999999 7999999865 4699999998 7643322 3
Q ss_pred cc-CCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECC
Q 012406 156 CA-AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (464)
Q Consensus 156 ~~-~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g 212 (464)
++ ...||+|++. |.+..+ ++...+++.+.+.|+.+|..+|+++|.|.+..
T Consensus 165 ~~~~~~GT~V~F~------PD~~iF-~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 215 (226)
T 4emv_A 165 ALKSKTGTKVTFM------PDATIF-STTDFKYNTISERLNESAFLLKNVTLSLTDKR 215 (226)
T ss_dssp CCTTCCEEEEEEE------ECTTTC-SCCCCCHHHHHHHHHHHHHHHCSCEEEEEETT
T ss_pred cCCCCCCeEEEEE------ECHHHc-CCCCcCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 32 6799999995 777665 66667889999999999999999999999864
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.90 E-value=1.9e-24 Score=211.08 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=130.4
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCC------------------eEEEEEeeCCeeEEEEEeCCCCC
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT------------------SINVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At------------------~I~I~i~~~g~~~I~V~DNG~GI 82 (464)
.|++|.+-+++.|.++. ..+|+|||+||+||+|+ .|.|..+. +...|+|.|||+||
T Consensus 45 ei~~Ll~ll~~~lYs~~-----~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~-~~~~I~I~DnG~GM 118 (256)
T 3o0i_A 45 EIAQLMSLIINTFYSNK-----EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK-QDRTLTIVDTGIGM 118 (256)
T ss_dssp HHHHHHHHHHHSCCSCT-----THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET-TTTEEEEEECSCCC
T ss_pred eHHHHHHHHHHhccCCc-----HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcC-CceEEEEecCCCCc
Confidence 58899999999988766 56999999999999875 34444443 44579999999999
Q ss_pred CcccHHHhHhhcccCCCccccc-c---ccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCce-eccc-cc
Q 012406 83 RYEDLPILCERHTTSKLSKYED-L---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM-ESEP-KA 155 (464)
Q Consensus 83 ~~edl~~l~~r~~TSK~~~~~d-l---~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~-~~~~-~~ 155 (464)
+++|+...+.++++||...|.| | ..+.++||||+||+|++.+| +|+|+||+.+ ..+|++...+|.. ...+ .+
T Consensus 119 t~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~gg~~~~v~~~~~ 197 (256)
T 3o0i_A 119 TKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTG 197 (256)
T ss_dssp CHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCS
T ss_pred CHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEeccceEEEeeCCC
Confidence 9999999999999999887754 5 46799999999999999999 8999999976 4689988876543 2222 13
Q ss_pred ccCCCceEEEEEeeeccchhhhhcccCCchhh---hhHHHHHHHHH--hhCC
Q 012406 156 CAAVKGTQIMVENLFYNMIARRKTLQNSSDDY---TKIVDLLSRMA--IHHT 202 (464)
Q Consensus 156 ~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~---~~I~~~l~~yA--l~~p 202 (464)
.+..+||+|+|+ +|....++ .+|.++|++|| |.+|
T Consensus 198 ~~~~~GT~I~l~------------LK~~~~e~~e~~~I~~iv~k~s~~l~~P 237 (256)
T 3o0i_A 198 EPMGRGTKVILH------------LKEDQTEYLEERRIKEIVKKHSQFIGYP 237 (256)
T ss_dssp SCCSSEEEEEEE------------ECGGGGGGGCHHHHHHHHHHHCTTCSSC
T ss_pred CCCCCCcEEEEE------------EcCcchhhccHHHHHHHHHHHHhhCCCC
Confidence 456899999998 23333344 78999999999 8888
No 18
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=99.89 E-value=2.9e-21 Score=199.94 Aligned_cols=310 Identities=17% Similarity=0.188 Sum_probs=190.6
Q ss_pred CCccccccChhHHHhhcCCccc--cCHHHHHHHHHHcchhc----CCCeEEEEEeeCCeeEEEEEeCCCCCCcccH----
Q 012406 18 EPPKIHRLEESVVNRIAAGEVI--QRPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDL---- 87 (464)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vI--~~~~~avkELIeNSlDA----~At~I~I~i~~~g~~~I~V~DNG~GI~~edl---- 87 (464)
....|+.|..-..-|.+.|.+| +++.++|+|+|+||+|+ +|+.|.|+|+.+| .|+|.|||+|||.+..
T Consensus 25 ~a~~I~vL~glE~VRkRPgMYiGst~~~hlv~EivdNsiDea~ag~~~~I~V~i~~dg--sI~V~DnGrGIPv~~h~~~~ 102 (408)
T 3lnu_A 25 NAADIEVLSGLDPVKRRPGMYTDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEK 102 (408)
T ss_dssp ---------CCHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTC
T ss_pred CHhHceeccccHHHhcCCccEECCCCcchhhHHHHHHHHHHhhcCCCceEEEEEeCCC--eEEEEEcCCCCCcccccccC
Confidence 4457999999999999999999 56799999999999999 8999999998777 5999999999999984
Q ss_pred ----HHh-HhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCceecccc---ccc-
Q 012406 88 ----PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK---ACA- 157 (464)
Q Consensus 88 ----~~l-~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~~~---~~~- 157 (464)
+.+ +..|+++|+. |.....+.|++|+|++++..+| .++|+++..+ ..|++.|.+|....+.+ ++.
T Consensus 103 ~~~~e~i~t~lhaggKfd---~~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG--k~~~q~f~~G~~~~~l~~ig~~~~ 177 (408)
T 3lnu_A 103 IPGVELILTRLHAGGKFN---NRNYTFSGGLHGVGVSVVNALSTKVELFIKREG--SEHRMEFRDGNAASKLEVVGTVGK 177 (408)
T ss_dssp SBHHHHHHHCC-----------------------CHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECSCCEEEEECCT
T ss_pred CcchheEEEecccCCCcC---CCceeecCCccccccceehhccCeEEEEEEECC--EEEEEEECCCEECCCceEeccCcC
Confidence 343 5889999964 4445589999999999999999 6999999766 36999999998644332 332
Q ss_pred CCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCee-eEEEEcCCCCCHHHHHHHHhCh
Q 012406 158 AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYGV 236 (464)
Q Consensus 158 ~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~-~~~l~t~~~~s~~~~i~~IfG~ 236 (464)
...||+|++. |.+..+ ++...+++.+.++|+++|..+|+++|.|.+.... ...+.. ...+.+-+..+-..
T Consensus 178 ~~~GT~V~F~------PD~~iF-~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~~~~~f~y--egGi~~yv~~l~~~ 248 (408)
T 3lnu_A 178 KNTGTRLRFW------ADPKYF-DTPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAE 248 (408)
T ss_dssp TCCEEEEEEE------ECGGGS-SCSCCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEEEC--SSSHHHHHHHHTTT
T ss_pred CCCCcEEEEE------ECHHHh-CCCCcCHHHHHHHHHHHHhhcCCCEEEEEeccCCceeEEEc--CchHHHHHHHHhcC
Confidence 5799999985 887765 6666788899999999999999999999986421 223333 34566767666543
Q ss_pred hhhcccEE--eeeeccCCCCCceeEEEEEEe-CCCCCCCCceEEEEEcCcccCC---------hHHHHHHHHHHHh--cC
Q 012406 237 SVASNLVQ--LEASEYNDSSSFVFKMDGYVS-NSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAA--TF 302 (464)
Q Consensus 237 ~va~~L~~--i~~~~~~~~~~~~~~i~G~is-~~~~~~kk~~~~lFIN~R~V~~---------~~L~kaI~~vy~~--~l 302 (464)
. .++. +-+... .+ ....++--+. +..| ...++-|+|+-+-.. ..|.++|++..+. .+
T Consensus 249 k---~~~~~~~~~~~~-~~--~~~~ve~Al~~~~~~---~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~ 319 (408)
T 3lnu_A 249 H---EMLPADLFVGSL-KK--DTEIVDWAAGWVPEG---ELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLL 319 (408)
T ss_dssp S---CCEEEEEEEEEE-EC--SSCEEEEEEEECSSS---CCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred C---CcCCCCCeEeeE-ec--CceeEEEEEEEcCCC---CeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2 1211 101110 00 1123333232 2223 245789999988654 2344555543332 23
Q ss_pred CCC---------CCcEEEEEEEcCCCceecccCCCCCeEecCChhH-HHHHHHHHHHHHHhcC
Q 012406 303 PKA---------SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEL-IVEKIQSAVELKLRQS 355 (464)
Q Consensus 303 pk~---------~~Pf~~L~I~i~p~~vDVNVhPtK~eV~F~~e~~-Ii~~I~~~l~~~L~~~ 355 (464)
+++ ..-.++|++.++.-..+ -.||...-=..-.. +-..+.+.|..+|...
T Consensus 320 kk~~~l~~~DiregL~aviSvkv~~PqFe---gQTK~kL~n~ev~~~V~~~v~~~l~~~l~en 379 (408)
T 3lnu_A 320 PRGVKLAPEDVWDRVTFVLSLKMTDPQFS---GQTKERLSSRQAAGFIEGAAHDAFSLYLNQN 379 (408)
T ss_dssp CTTCCCCHHHHHTTEEEEEEEECSSCCEE---STTSCEECCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHhhCeEEEEEEEcCCCccc---CcccccccCHHHHHHHHHHHHHHHHHHHHHC
Confidence 332 12368899999854544 36676543322222 3456677777777544
No 19
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.88 E-value=2.8e-23 Score=201.25 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=128.8
Q ss_pred ccccccChhHHHhhcCCccccCHHHHHHHHHHcchhcC----------------CC--eEEEEEeeCCeeEEEEEeCCCC
Q 012406 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHG 81 (464)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~----------------At--~I~I~i~~~g~~~I~V~DNG~G 81 (464)
..|++|++.++++|.+ +|..+|+|||+||+||+ |+ .|.|.++.++. .|+|.|||+|
T Consensus 31 ~~i~~L~~~l~~~lys-----~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~-~i~I~DnG~G 104 (235)
T 2ior_A 31 SEVKQLLHLMIHSLYS-----NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-TLTISDNGVG 104 (235)
T ss_dssp HHHHHHHHHHHHHTGG-----GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTT-EEEEEECSSC
T ss_pred hhHHHHHHHHHHhhcC-----CHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCce-EEEEEECCCC
Confidence 3589999999999887 78899999999999998 44 45665555554 5999999999
Q ss_pred CCcccHHHhHhhcccCCCccccc-c-----ccccccCcccchhHhhhhhc-eEEEEEEEcCC--ccEEEEEEEcCc-eec
Q 012406 82 IRYEDLPILCERHTTSKLSKYED-L-----QSIKSMGFRGEALASMTYVG-HVTVTTITKGH--LHGYRVSYRDGV-MES 151 (464)
Q Consensus 82 I~~edl~~l~~r~~TSK~~~~~d-l-----~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~--~~~~~~~~~~G~-~~~ 151 (464)
|+++|+...+.++++|+...|.+ + .....+|++|+||+|...++ +|+|+||+.++ ..+|++.+..+. +..
T Consensus 105 Ms~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~i 184 (235)
T 2ior_A 105 MTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTV 184 (235)
T ss_dssp CCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEEE
T ss_pred CCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEEE
Confidence 99999999999999998765532 2 23578999999998776666 79999999887 778988876543 222
Q ss_pred ccccccCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHH--hhCC
Q 012406 152 EPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHT 202 (464)
Q Consensus 152 ~~~~~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yA--l~~p 202 (464)
.+ .....+||+|+|. |. +.+++++ +..+|.+++++|| +.+|
T Consensus 185 ~~-~~~~~~GT~V~v~-Lk---~~~~~~~-----e~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 185 AD-ITKEDRGTEITLH-LR---EGEDEFL-----DDWRVRSIISKYSDHIALP 227 (235)
T ss_dssp EE-ECCCSCEEEEEEE-EC---TTCGGGG-----CHHHHHHHHHHHTTSCCSC
T ss_pred ee-CCCCCCCEEEEEE-Ec---CchhhhC-----CHHHHHHHHHHHhccCCCC
Confidence 11 1355799999996 21 3343333 4688999999999 7777
No 20
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.88 E-value=2.4e-22 Score=189.88 Aligned_cols=165 Identities=22% Similarity=0.293 Sum_probs=142.1
Q ss_pred cccccChhHHHhhcCCccccC-----HHHHHHHHHHcchh---cC-CCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhH
Q 012406 21 KIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILC 91 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~-----~~~avkELIeNSlD---A~-At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~ 91 (464)
.|+.|..--.-|.+.|.+|.+ |.++|+|||+||+| || |+.|.|.++.+| .|+|.|||+||+.+
T Consensus 6 ~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g--~i~V~DnG~Gip~~------ 77 (198)
T 3ttz_A 6 QIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN--WIKVTDNGRGIPVD------ 77 (198)
T ss_dssp HHHHHHHHHHHHHSHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG--EEEEEECSSCCCCS------
T ss_pred HeEEecchHHHhcCCCcEECCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC--eEEEEECCCCcccc------
Confidence 688999988889999999865 78999999999999 58 999999999877 69999999999987
Q ss_pred hhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCceecccc--cccCCCceEEEEEe
Q 012406 92 ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACAAVKGTQIMVEN 168 (464)
Q Consensus 92 ~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~~~~~~--~~~~~~GTtV~V~~ 168 (464)
+|.+||+...+++.. +++++.+| +++|+++..+. .|++.|.+|....+.+ +.+.+.||+|++.
T Consensus 78 -~h~~~~~~~~e~i~t----------~SvVNALS~~l~v~v~r~g~--~~~~~f~~G~~~~~l~~i~~~~~~GT~V~F~- 143 (198)
T 3ttz_A 78 -IQEKMGRPAVEVILT----------SSVVNALSQDLEVYVHRNET--IYHQAYKKGVPQFDLKEVGTTDKTGTVIRFK- 143 (198)
T ss_dssp -BCTTTSSBHHHHHHH----------TCHHHHTEEEEEEEEEETTE--EEEEEEETTEESSCCEEEEECSCCEEEEEEE-
T ss_pred -ccCcCCCccccccce----------eEehhhhcCeEEEEEEECCc--EEEEEEeCCEECCCceeccCCCCCCcEEEEE-
Confidence 788999988877532 77888887 79999988763 7999999998754332 3456899999996
Q ss_pred eeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECC
Q 012406 169 LFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (464)
Q Consensus 169 LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g 212 (464)
|.++.++++...+++.+.+.|+++|+.||+++|.|.+..
T Consensus 144 -----Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 182 (198)
T 3ttz_A 144 -----ADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDER 182 (198)
T ss_dssp -----ECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECS
T ss_pred -----ECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeec
Confidence 899887788888999999999999999999999999864
No 21
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.82 E-value=1.1e-20 Score=182.98 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=113.1
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCC------------------CeEEEEEeeCCeeEEEEEeCCCCC
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA------------------TSINVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~A------------------t~I~I~i~~~g~~~I~V~DNG~GI 82 (464)
.|++|.+.+++.|.++ |..+|+|||+||+||+| ..|.|.++.++ ..|.|.|||+||
T Consensus 17 ei~~L~~ll~~~lys~-----~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~-~~i~I~DnG~GM 90 (236)
T 2gqp_A 17 EVNRMMKLIINSLYKN-----KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGM 90 (236)
T ss_dssp HHHHHHHHHHHHTTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred hHHHHHHHHHHhhcCC-----chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC-CEEEEEECCcCC
Confidence 5889999999998876 67899999999999987 46777766554 479999999999
Q ss_pred CcccHHHhHhhcccC-------CCccc-----cccccccccCcccchhHhhhhhceEEEEEEEcCCccEEEEEEEcCcee
Q 012406 83 RYEDLPILCERHTTS-------KLSKY-----EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVME 150 (464)
Q Consensus 83 ~~edl~~l~~r~~TS-------K~~~~-----~dl~~~~t~GfRGeALaSis~vs~l~I~Srt~~~~~~~~~~~~~G~~~ 150 (464)
+++|+...+.++++| |+... .|+..+..||+++.++++++ .+|+|.||+.++ .+|.+..++|.+.
T Consensus 91 t~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va--~~v~V~Sr~~~~-~~~~w~~~gg~~~ 167 (236)
T 2gqp_A 91 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFS 167 (236)
T ss_dssp CHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE--EEEEEEEECTTS-CCEEEEESSSCEE
T ss_pred CHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC--CEEEEEEeCCCC-ceEEEEEeCCEEE
Confidence 999999988888888 44432 45555666666665555544 479999999875 4777766655553
Q ss_pred ccccc--ccCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhh
Q 012406 151 SEPKA--CAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIH 200 (464)
Q Consensus 151 ~~~~~--~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~ 200 (464)
..+.+ ....+||+|++. |- +.+..++ +..+|.+++++||-+
T Consensus 168 i~~~~~~~~~~~GT~I~l~-Lk---~~~~~~l-----e~~~i~~lv~~~s~~ 210 (236)
T 2gqp_A 168 VIADPRGNTLGRGTTITLV-LK---EEASDYL-----ELDTIKNLVKKYSQF 210 (236)
T ss_dssp EEECTTCSCSSSEEEEEEE-EC---GGGGGGG-----CHHHHHHHHHHHHTT
T ss_pred EEeccCCCCCCCCeEEEEE-EC---CcchhhC-----hHHHHHHHHHHHhhh
Confidence 22221 235799999997 21 1112222 457899999999954
No 22
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.81 E-value=3.2e-20 Score=182.59 Aligned_cols=165 Identities=20% Similarity=0.247 Sum_probs=123.1
Q ss_pred ccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCC----------------CeEEEEEe-eCCeeEEEEEeCCCCCCc
Q 012406 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA----------------TSINVVVK-DGGLKLIQVSDDGHGIRY 84 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~A----------------t~I~I~i~-~~g~~~I~V~DNG~GI~~ 84 (464)
|++|.+.+++.|.+ +|..+|+|||+||+||+| +.|.|.|. +.+...|.|.|||+||++
T Consensus 54 i~~Ll~ll~~~lys-----~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~ 128 (264)
T 1yc1_A 54 IAQLMSLIINTFYS-----NKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTK 128 (264)
T ss_dssp HHHHHHHHHHCCCS-----CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCH
Confidence 67788888877654 888999999999999998 77777775 334457999999999999
Q ss_pred ccHHHhHhhcccCCCccc-ccc---ccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCc-eecccc-ccc
Q 012406 85 EDLPILCERHTTSKLSKY-EDL---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPK-ACA 157 (464)
Q Consensus 85 edl~~l~~r~~TSK~~~~-~dl---~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~-~~~~~~-~~~ 157 (464)
+||...+.++++|+...| +++ ......|++|.+++|...++ +|+|+||+.++ .+|.+...++. +...+. ...
T Consensus 129 edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~-~~~~w~~~~~~~~~i~~~~~~~ 207 (264)
T 1yc1_A 129 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD-EQYAWESSAGGSFTVRTDTGEP 207 (264)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSSC
T ss_pred HHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCC-ceEEEEEcCCceEEEeecCCCC
Confidence 999999999999986654 111 23467889999998887777 69999999874 47887776543 322221 124
Q ss_pred CCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhC
Q 012406 158 AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201 (464)
Q Consensus 158 ~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~ 201 (464)
..+||+|+|. |. +.+++++ +..+|.+++++||.+-
T Consensus 208 ~~~GT~I~l~-Lk---~~~~e~~-----e~~~i~~lv~k~s~fi 242 (264)
T 1yc1_A 208 MGRGTKVILH-LK---EDQTEYL-----EERRIKEIVKKHSQFI 242 (264)
T ss_dssp CSSEEEEEEE-EC---GGGGGGG-----SHHHHHHHHHHHTTTC
T ss_pred CCCCeEEEEE-EC---Cchhhhh-----hHHHHHHHHHHHHhhC
Confidence 5789999997 31 1233332 4578999999999554
No 23
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.79 E-value=1.4e-19 Score=173.47 Aligned_cols=166 Identities=18% Similarity=0.212 Sum_probs=118.4
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCC----------------e--EEEEEeeCCeeEEEEEeCCCCC
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT----------------S--INVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At----------------~--I~I~i~~~g~~~I~V~DNG~GI 82 (464)
.|++|.+-+++.|.++. ..+|+|||+||+||+|+ . |.|..+. +...|+|.|||+||
T Consensus 11 ~~~~l~~ll~~~lys~~-----~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~-~~~~i~I~DnG~GM 84 (220)
T 2wer_A 11 EITQLMSLIINTVYSNK-----EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP-EQKVLEIRDSGIGM 84 (220)
T ss_dssp HHHHHHHHHHHHCCSST-----THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEG-GGTEEEEEECSCCC
T ss_pred cHHHHHHHHHHhccCCc-----hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECC-CCCEEEEEEcCCCC
Confidence 46778888888877765 57999999999999983 4 4554443 34579999999999
Q ss_pred CcccHHHhHhhcccCCCccc----cccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCc-eecccc--
Q 012406 83 RYEDLPILCERHTTSKLSKY----EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPK-- 154 (464)
Q Consensus 83 ~~edl~~l~~r~~TSK~~~~----~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~-~~~~~~-- 154 (464)
+++|+...+.++++|....| .+.......|++|.+++|...++ +++|+||+.++ .+|.+.+.+|. +...+.
T Consensus 85 s~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~-~~~~~~~~~~~~~~i~~~~~ 163 (220)
T 2wer_A 85 TKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEV 163 (220)
T ss_dssp CHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSSSEEEEEECSS
T ss_pred CHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCC-ceeEEEeCCCCceEeecccC
Confidence 99999999989888843211 11123467888889988887777 79999999874 47888776543 322211
Q ss_pred cccCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCC
Q 012406 155 ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHT 202 (464)
Q Consensus 155 ~~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p 202 (464)
+....+||+|+|+ |. +.+++++ +..+|.+++++||.+-+
T Consensus 164 ~~~~~~GT~I~l~-Lk---~~~~~~~-----e~~~i~~~v~~~a~~l~ 202 (220)
T 2wer_A 164 NERIGRGTILRLF-LK---DDQLEYL-----EEKRIKEVIKRHSEFVA 202 (220)
T ss_dssp SCCCSSEEEEEEE-EC---TTCGGGG-----CHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCeEEEEE-EC---cchHHhC-----CHHHHHHHHHHHHhcCC
Confidence 2355789999998 31 1233332 45789999999996543
No 24
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.70 E-value=1.4e-16 Score=168.48 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHcchhcCCC-----eEEEEEeeC----CeeEEEEEeCCCCCCcccHHHhHhhc-ccCCCccccccccccc
Q 012406 41 RPVSAVKELVENSLDADAT-----SINVVVKDG----GLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIKS 110 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At-----~I~I~i~~~----g~~~I~V~DNG~GI~~edl~~l~~r~-~TSK~~~~~dl~~~~t 110 (464)
.+.++|.|||+||+||+++ .|.|.+..+ +...|+|.|||+||++++++.+|++| .++|.. ...+
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~~ 105 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQT 105 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCC------CSCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccc------cccC
Confidence 5789999999999999987 899998753 45679999999999999999999998 777763 2356
Q ss_pred cCcccchhHhhhhhce------EEEEEEEcCCccEEEEEE--E----cCceecccccc---cCCCceEEEEEeeeccchh
Q 012406 111 MGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSY--R----DGVMESEPKAC---AAVKGTQIMVENLFYNMIA 175 (464)
Q Consensus 111 ~GfRGeALaSis~vs~------l~I~Srt~~~~~~~~~~~--~----~G~~~~~~~~~---~~~~GTtV~V~~LF~n~Pv 175 (464)
.|++|+||+++..+++ ++|.|+..+...++.+.+ . .|... ...+. ...+||+|+|. ++.+.
T Consensus 106 ~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~-~~~~~~~~~~~~GT~V~v~-l~~~~-- 181 (471)
T 1mu5_A 106 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIV-ERGSVENTRGFHGTSVAIS-IPGDW-- 181 (471)
T ss_dssp SCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEE-EEEEEECCTTCCEEEEEEE-EECCH--
T ss_pred CCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccc-ccccccCCCCCCCEEEEEE-EcCCc--
Confidence 7999999999988875 999999876554555443 2 33332 12232 45799999998 32221
Q ss_pred hhhcccCCchhhhhHHHHHHHHHhhCCCeEEEEEECCee
Q 012406 176 RRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA 214 (464)
Q Consensus 176 Rrk~lk~~~~e~~~I~~~l~~yAl~~p~v~f~l~~~g~~ 214 (464)
.+...+|.+++++||+.+|+++|.+.+++..
T Consensus 182 --------~e~~~~I~~~l~~~al~~p~v~i~l~~~~~~ 212 (471)
T 1mu5_A 182 --------PKAKSRIYEYIKRTYIITPYAEFIFKDPEGN 212 (471)
T ss_dssp --------HHHHHHHHHHHHHHHHHCTTCEEEEECTTCC
T ss_pred --------chHHHHHHHHHHHHHhHCCCeEEEEEECCce
Confidence 1123689999999999999999999987653
No 25
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.70 E-value=1.5e-17 Score=163.93 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=114.0
Q ss_pred cccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCC----------------C--eEEEEEeeCCeeEEEEEeCCCCC
Q 012406 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA----------------T--SINVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~A----------------t--~I~I~i~~~g~~~I~V~DNG~GI 82 (464)
.|++|.+-+++.|.++. ..+|+|||+||+||+| + .|.|.++.+ ...|+|.|||+||
T Consensus 13 ei~~Ll~li~~~lYsn~-----eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~-~~~l~I~DnGiGM 86 (269)
T 1qy5_A 13 EVNRMMKLIINSLYKNK-----EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE-KNLLHVTDTGVGM 86 (269)
T ss_dssp HHHHHHHHHHHHHTTCT-----THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT-TTEEEEEECSCCC
T ss_pred hHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCC-ceEEEEEECCCCC
Confidence 47889999999888765 4599999999999986 3 455555543 3469999999999
Q ss_pred CcccHHHhHhhcccC-------CCccc-----cccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCce
Q 012406 83 RYEDLPILCERHTTS-------KLSKY-----EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM 149 (464)
Q Consensus 83 ~~edl~~l~~r~~TS-------K~~~~-----~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~~ 149 (464)
+++||...+..+++| |+... .| ....|..|.+++|+..+| +|+|+||+.++ .+|.+....|.+
T Consensus 87 t~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d---~~~IG~fGvGfySaf~va~~v~V~Sk~~~~-~~~~w~s~gg~~ 162 (269)
T 1qy5_A 87 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQST---SELIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDSNEF 162 (269)
T ss_dssp CHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCC---HHHHHHTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSSCE
T ss_pred CHHHHHHHhhhhcccccHHHHHhhhhcccccccc---hhhcCCccccHHHHhhccceEEEEEEecCC-cEEEEEEeCCEE
Confidence 999998888887777 33221 23 244566777788887787 69999999875 567776655555
Q ss_pred ecccc--cccCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhC
Q 012406 150 ESEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201 (464)
Q Consensus 150 ~~~~~--~~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~ 201 (464)
...+. .....+||+|++. | . .....++ +..+|.+++.+|+.+-
T Consensus 163 ~i~~~~~~~~~~~GT~I~L~-L-k--~d~~e~l-----e~~~i~~lvkkys~fi 207 (269)
T 1qy5_A 163 SVIADPRGNTLGRGTTITLV-L-K--EEASDYL-----ELDTIKNLVKKYSQFI 207 (269)
T ss_dssp EEEECTTCSCSSSEEEEEEE-E-C--GGGGGGG-----SHHHHHHHHHTTCTTC
T ss_pred EEEeccCCCcCCCCeEEEEE-E-c--ccchhhh-----hHHHHHHHHHhhhccc
Confidence 32221 1235799999997 1 0 1111222 3467999999999543
No 26
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.70 E-value=3.8e-17 Score=177.48 Aligned_cols=157 Identities=21% Similarity=0.258 Sum_probs=120.1
Q ss_pred cCHHHHHHHHHHcchhcCCC-----eEEEEEeeCC--eeEEEEEeCCCCCCcccHHHhHhhc-ccCCCcccccccccccc
Q 012406 40 QRPVSAVKELVENSLDADAT-----SINVVVKDGG--LKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIKSM 111 (464)
Q Consensus 40 ~~~~~avkELIeNSlDA~At-----~I~I~i~~~g--~~~I~V~DNG~GI~~edl~~l~~r~-~TSK~~~~~dl~~~~t~ 111 (464)
..+.++|+|||+||+||+++ .|.|.+..++ ...|+|.|||+||+.++++.+|.+| +|+|+...+ .+.
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~-----~s~ 110 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALK-----QSR 110 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC------CC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCcccccc-----ccC
Confidence 35789999999999999886 8999887643 4579999999999999999999887 677765421 467
Q ss_pred CcccchhHhhhhhce------EEEEEEEcCCccEEEEEE----EcCceec---ccccccCCCceEEEEEeeeccchhhhh
Q 012406 112 GFRGEALASMTYVGH------VTVTTITKGHLHGYRVSY----RDGVMES---EPKACAAVKGTQIMVENLFYNMIARRK 178 (464)
Q Consensus 112 GfRGeALaSis~vs~------l~I~Srt~~~~~~~~~~~----~~G~~~~---~~~~~~~~~GTtV~V~~LF~n~PvRrk 178 (464)
|++|+||+++..+++ ++|.|+..+...+|++.+ .+|.... ...++...+||+|++. |.
T Consensus 111 Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~--f~------- 181 (621)
T 2q2e_B 111 GQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELE--MR------- 181 (621)
T ss_dssp SSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEE--CS-------
T ss_pred CCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEE--ec-------
Confidence 999999999988874 389999877657888887 4443211 2234556899999998 32
Q ss_pred cccCCchh--hhhHHHHHHHHHhhCCCeEEEEEECCe
Q 012406 179 TLQNSSDD--YTKIVDLLSRMAIHHTNVSFSCRKHGA 213 (464)
Q Consensus 179 ~lk~~~~e--~~~I~~~l~~yAl~~p~v~f~l~~~g~ 213 (464)
....+ +..+.+++++||+++|+++|+|.+++.
T Consensus 182 ---~~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~~ 215 (621)
T 2q2e_B 182 ---AAYVKGRRQSIYEYLKATAIVNPHARITLIDPDG 215 (621)
T ss_dssp ---CCCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTS
T ss_pred ---CccchHHHHHHHHHHHHHHhhCCCCEEEEEECCc
Confidence 11112 367899999999999999999998764
No 27
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.69 E-value=1.5e-16 Score=170.27 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHcchhcCCC-----eEEEEEeeC----CeeEEEEEeCCCCCCcccHHHhHhhc-ccCCCccccccccccc
Q 012406 41 RPVSAVKELVENSLDADAT-----SINVVVKDG----GLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIKS 110 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At-----~I~I~i~~~----g~~~I~V~DNG~GI~~edl~~l~~r~-~TSK~~~~~dl~~~~t 110 (464)
.+.++|.|||+||+||+++ .|.|.+..+ +...|+|.|||+||++++++.+|.+| +|+|.. ...+
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~~ 104 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQT 104 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCC------CSCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcc------cccC
Confidence 5789999999999999988 899998753 45679999999999999999999998 788763 2356
Q ss_pred cCcccchhHhhhhhce------EEEEEEEcCCccEEEEEE--E----cCceecccccc---cCCCceEEEEEeeeccchh
Q 012406 111 MGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSY--R----DGVMESEPKAC---AAVKGTQIMVENLFYNMIA 175 (464)
Q Consensus 111 ~GfRGeALaSis~vs~------l~I~Srt~~~~~~~~~~~--~----~G~~~~~~~~~---~~~~GTtV~V~~LF~n~Pv 175 (464)
.|++|+||+.+..+++ ++|.|+..+...++.+.+ . +|... ...+. ...+||+|+|. |+.+
T Consensus 105 ~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~-~~~~~~~~~~~~GT~V~v~-l~~~--- 179 (530)
T 2zbk_B 105 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIV-ERGSVENTRGFHGTSVAIS-IPGD--- 179 (530)
T ss_dssp SCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEE-EEEEEECCSSCCEEEEEEE-EECC---
T ss_pred CCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccc-cccccCCCCCCCCcEEEEE-eccc---
Confidence 8999999999887765 999999876544555443 2 33332 12222 25789999998 3222
Q ss_pred hhhcccCCchhh-hhHHHHHHHHHhhCCCeEEEEEECCe
Q 012406 176 RRKTLQNSSDDY-TKIVDLLSRMAIHHTNVSFSCRKHGA 213 (464)
Q Consensus 176 Rrk~lk~~~~e~-~~I~~~l~~yAl~~p~v~f~l~~~g~ 213 (464)
..++ ..+.+++++||+.+|++.|.+.+++.
T Consensus 180 --------~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~~ 210 (530)
T 2zbk_B 180 --------WPKAKSRIYEYIKRTYIITPYAEFIFKDPEG 210 (530)
T ss_dssp --------HHHHHHHHHHHHHHHHHHCTTCCEEEECTTS
T ss_pred --------hhhHHHHHHHHHHHHHHHCCCcEEEEEECCC
Confidence 2233 78999999999999999999998764
No 28
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=99.65 E-value=5.9e-16 Score=161.12 Aligned_cols=179 Identities=14% Similarity=0.113 Sum_probs=136.6
Q ss_pred cccccChhHHHhhcCCccccC----------------------------HHHHHHHHHHcchhcC-----CCeEEEEEee
Q 012406 21 KIHRLEESVVNRIAAGEVIQR----------------------------PVSAVKELVENSLDAD-----ATSINVVVKD 67 (464)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vI~~----------------------------~~~avkELIeNSlDA~-----At~I~I~i~~ 67 (464)
.|+.|..--.-|.+.|.+|.+ +.+++.|+|+||+|+. |+.|.|+|+.
T Consensus 16 ~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~ 95 (418)
T 1pvg_A 16 KYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA 95 (418)
T ss_dssp HSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET
T ss_pred heeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC
Confidence 699999988889999988843 4569999999999976 8999999997
Q ss_pred CCeeEEEEEeCCCCCCcccHH---------HhHhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCc
Q 012406 68 GGLKLIQVSDDGHGIRYEDLP---------ILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHL 137 (464)
Q Consensus 68 ~g~~~I~V~DNG~GI~~edl~---------~l~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~ 137 (464)
++ ..|+|.|||+|||.+..+ .++..|+++|+. +-....+-|.+|.+++....+| .++|+++...+.
T Consensus 96 d~-~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd---~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdG 171 (418)
T 1pvg_A 96 EE-HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD---DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 171 (418)
T ss_dssp TT-TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCC---TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTT
T ss_pred CC-CEEEEEECCCcccCcccccCCcccceEEEEEEecccccC---CCceeccCCccceeeeeeeeccceEEEEEEECCCC
Confidence 64 259999999999998744 245789999974 3233467899999999999999 699999973333
Q ss_pred cEEEEEEEcCc-eeccc--cccc-CCCceEEEEEeeeccchhhhhcccCCchhhhh---HHHHHHHHHhhCCCeEEEEEE
Q 012406 138 HGYRVSYRDGV-MESEP--KACA-AVKGTQIMVENLFYNMIARRKTLQNSSDDYTK---IVDLLSRMAIHHTNVSFSCRK 210 (464)
Q Consensus 138 ~~~~~~~~~G~-~~~~~--~~~~-~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~---I~~~l~~yAl~~p~v~f~l~~ 210 (464)
..|+..|.+|. ....+ .++. ..+||+|++. |....+ ....-.++. +.+.++.+|..+|++++.|.+
T Consensus 172 k~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~------PD~~iF-~~~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~d 244 (418)
T 1pvg_A 172 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTRF-GMKELDNDILGVMRRRVYDINGSVRDINVYLNG 244 (418)
T ss_dssp EEEEEEEETTTTEECCCEEEECCSSCCEEEEEEE------ECGGGG-TCSSCCHHHHHHHHHHHHHHHHHSTTCEEEETT
T ss_pred cEEEEEEEcCCCccCCCeecccCCCCCceEEEEE------EChHHc-CCcccCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 46899999873 22222 1222 4689999985 655443 333334444 679999999999999999875
No 29
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.63 E-value=8.1e-16 Score=151.69 Aligned_cols=162 Identities=20% Similarity=0.276 Sum_probs=115.8
Q ss_pred ccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCC------------------CeEEEEEeeCCeeEEEEEeCCCCCC
Q 012406 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA------------------TSINVVVKDGGLKLIQVSDDGHGIR 83 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~A------------------t~I~I~i~~~g~~~I~V~DNG~GI~ 83 (464)
|++|-+-+++.+.++. ..+|+|||+||.||.+ ..|.|.++.++ ..|.|.|||.||+
T Consensus 32 i~~Ll~ll~~~lYsn~-----~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~-~tLtI~DNGiGMt 105 (281)
T 3peh_A 32 VTRLMDIIVNSLYTQK-----EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEK-NILSITDTGIGMT 105 (281)
T ss_dssp HHHHHHHHHHHHTTCG-----GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT-TEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccCCh-----HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCC-cEEEEEeCCCCCC
Confidence 7788888888887654 6699999999999975 35666666544 4699999999999
Q ss_pred cccHHHhHhhcccCCCcccc-cc----ccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCc-eecccc--
Q 012406 84 YEDLPILCERHTTSKLSKYE-DL----QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPK-- 154 (464)
Q Consensus 84 ~edl~~l~~r~~TSK~~~~~-dl----~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~-~~~~~~-- 154 (464)
++||...+...++|....|- .+ ......|.+|.|++|...+| +|+|+||..++ .+|.+...+|. ....+.
T Consensus 106 ~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~-~~~~Wes~g~g~fti~~~~~ 184 (281)
T 3peh_A 106 KVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDD-EQYIWESTADAKFTIYKDPR 184 (281)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEEETTSCEEEEECTT
T ss_pred HHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCC-CEEEEEECCCccEEEEEcCC
Confidence 99998766666666432221 11 23568899999999998888 69999999764 57887766543 322221
Q ss_pred cccCCCceEEEEEeeeccchhhhhcccCCchh---hhhHHHHHHHHHhhCC
Q 012406 155 ACAAVKGTQIMVENLFYNMIARRKTLQNSSDD---YTKIVDLLSRMAIHHT 202 (464)
Q Consensus 155 ~~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e---~~~I~~~l~~yAl~~p 202 (464)
.....+||+|++. |+....+ -.+|.+++.+|+-+-|
T Consensus 185 ~~~~~~GT~I~L~------------Lked~~e~le~~~ik~ivkkys~fi~ 223 (281)
T 3peh_A 185 GATLKRGTRISLH------------LKEDATNLLNDKKLMDLISKYSQFIQ 223 (281)
T ss_dssp CSTTSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCeEEEEE------------ECCchhhhcCHHHHHHHHHHhhccCC
Confidence 1235789999997 2222223 3689999999995533
No 30
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.61 E-value=5.2e-16 Score=150.06 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=109.6
Q ss_pred ccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCCC------------------eEEEEEeeCCeeEEEEEeCCCCCC
Q 012406 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT------------------SINVVVKDGGLKLIQVSDDGHGIR 83 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~At------------------~I~I~i~~~g~~~I~V~DNG~GI~ 83 (464)
+++|-+-+++.+.+ ++..+|+|||+||.||.++ .|.|..+.+. ..|.|.|||.||+
T Consensus 25 ~~~ll~ll~~~lYs-----~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DnGiGMt 98 (239)
T 3nmq_A 25 IAQLMSLIINTFYS-----NKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQE-RTLTLVDTGIGMT 98 (239)
T ss_dssp HHHHHHHHHHSCCC-----CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTT-TEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccC-----CcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCc-cEEEEEeCCCCCC
Confidence 56666666666654 5577999999999999753 4666665443 4699999999999
Q ss_pred cccHHHhHhhcccCCCccc-ccc---ccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEc-Cceecccc-cc
Q 012406 84 YEDLPILCERHTTSKLSKY-EDL---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPK-AC 156 (464)
Q Consensus 84 ~edl~~l~~r~~TSK~~~~-~dl---~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~-G~~~~~~~-~~ 156 (464)
++|+.......+.|....| +.+ ......|..|+|++|...+| +|+|+||+.++ .+|.+..+. |....++. ..
T Consensus 99 ~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~-~~~~W~s~~~g~fti~~~~~~ 177 (239)
T 3nmq_A 99 KADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDD-EQYAWESSAGGSFTVRADHGE 177 (239)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSS
T ss_pred HHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCC-ceeEEEECCCCcEEEEecCCC
Confidence 9999665544454432222 111 23578999999999999999 69999998754 467776554 33322211 12
Q ss_pred cCCCceEEEEEeeeccchhhhhcccCCchh---hhhHHHHHHHHHhhC
Q 012406 157 AAVKGTQIMVENLFYNMIARRKTLQNSSDD---YTKIVDLLSRMAIHH 201 (464)
Q Consensus 157 ~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e---~~~I~~~l~~yAl~~ 201 (464)
...+||+|++. |+....+ -.+|++++++|+-+-
T Consensus 178 ~~~~GT~I~L~------------lk~d~~e~l~~~~i~~lv~kys~fi 213 (239)
T 3nmq_A 178 PIGRGTKVILH------------LKEDQTEYLEERRVKEVVKKHSQFI 213 (239)
T ss_dssp CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEEE------------ECCChHHhcCHHHHHHHHHHHHhcc
Confidence 34789999997 2222222 357999999998553
No 31
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.2e-15 Score=164.47 Aligned_cols=159 Identities=20% Similarity=0.234 Sum_probs=115.7
Q ss_pred ccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCC------------------CeEEEEEeeCCeeEEEEEeCCCCCC
Q 012406 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA------------------TSINVVVKDGGLKLIQVSDDGHGIR 83 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~A------------------t~I~I~i~~~g~~~I~V~DNG~GI~ 83 (464)
+++|-+-+++.+. .++..+|+|||+||+||++ ..|.|.++.++ ..|+|.|||+||+
T Consensus 12 ~~~Ll~li~~sLY-----snkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt 85 (677)
T 2cg9_A 12 ITQLMSLIINTVY-----SNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ-KVLEIRDSGIGMT 85 (677)
T ss_dssp HHHHHHHHHHSCC-----SCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG-TEEEEEECSCCCC
T ss_pred HHHHHHHHHHhCC-----CCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC-CEEEEEECCCCCC
Confidence 5555555555544 4567799999999999984 35777777655 4799999999999
Q ss_pred cccHHHhHhhcccC-------CCccccccccccccCcccchhHhhhhhc-eEEEEEEEcCCccEEEEEEEcCc-eecccc
Q 012406 84 YEDLPILCERHTTS-------KLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPK 154 (464)
Q Consensus 84 ~edl~~l~~r~~TS-------K~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~~~~~~~~~~~~G~-~~~~~~ 154 (464)
++|+...+.++++| |+....| ....|..|.|++|...++ +|+|+||+.++ .+|.+...+|. ....+.
T Consensus 86 ~edl~~~l~tIA~Sgt~~f~~kl~~~~d---~~~IGqFGvGFySaf~vadkV~V~Sk~~~~-~~~~W~s~g~~~~ti~~~ 161 (677)
T 2cg9_A 86 KAELINNLGTIAKSGTKAFMEALSAGAD---VSMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLD 161 (677)
T ss_dssp HHHHHGGGSSSSSCTTHHHHSCCCSSCC---CCCCCCTTCTTGGGGGTEEEEEEEEECTTS-CEEEEEECSSSEEEEEEC
T ss_pred HHHHHHHHHhHhccccHHHHHhhhcccc---hhhcCCCCchhHHHhhcCcEEEEEEccCCC-ceEEEEEcCCceEEEeec
Confidence 99999988899888 5543323 457888899988776666 79999999874 48888766553 222221
Q ss_pred --cccCCCceEEEEEeeeccchhhhhcccCCchh---hhhHHHHHHHHHhhCC
Q 012406 155 --ACAAVKGTQIMVENLFYNMIARRKTLQNSSDD---YTKIVDLLSRMAIHHT 202 (464)
Q Consensus 155 --~~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e---~~~I~~~l~~yAl~~p 202 (464)
.....+||+|++. |+....+ ..+|.+++.+||-+-+
T Consensus 162 ~~~~~~~~GT~I~L~------------Lk~d~~e~l~~~~i~~lvkkys~fi~ 202 (677)
T 2cg9_A 162 EVNERIGRGTILRLF------------LKDDQLEYLEEKRIKEVIKRHSEFVA 202 (677)
T ss_dssp CSSCCCSSEEEEEEE------------ECTTGGGGGCHHHHHHHHHHHSTTCS
T ss_pred CCCCCCCCCeEEEEE------------EcchhhccccHHHHHHHHHHHHhhCC
Confidence 1345799999997 2332323 5789999999996543
No 32
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.34 E-value=1.7e-12 Score=126.01 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=107.6
Q ss_pred ccccChhHHHhhcCCccccCHHHHHHHHHHcchhcCC-------------------------------------------
Q 012406 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA------------------------------------------- 58 (464)
Q Consensus 22 I~~L~~~v~~~i~ag~vI~~~~~avkELIeNSlDA~A------------------------------------------- 58 (464)
+++|=+-+++.+. .++.-.|+|||.||.||-.
T Consensus 33 ~~~ll~li~~slY-----s~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (272)
T 3ied_A 33 VNKVMDIIVNSLY-----TDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKE 107 (272)
T ss_dssp HHHHHHHHHHCTT-----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHHHHHHhhcC-----CCHHHHHHHHHHhhHHHHHHHHHhccChhhhhcccccccccccccccccccccccccccccc
Confidence 4555555555554 4566799999999999831
Q ss_pred -----------CeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccc-ccc----ccccccCcccchhHhhh
Q 012406 59 -----------TSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKY-EDL----QSIKSMGFRGEALASMT 122 (464)
Q Consensus 59 -----------t~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~-~dl----~~~~t~GfRGeALaSis 122 (464)
-.|.|.++.+.. .|.|.|||.||+++||...+...+.|....| +.+ ......|..|.+++|..
T Consensus 108 ~~~e~~~~~~~l~I~I~~Dk~~~-tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaF 186 (272)
T 3ied_A 108 NVEEEKNDIKKLIIKIKPDKEKK-TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSF 186 (272)
T ss_dssp ------CGGGGCCEEEEEETTTT-EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGG
T ss_pred ccccccCCCCCcEEEEEEeCCCC-EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheee
Confidence 146666665543 6999999999999999987766666643322 111 23467899999999998
Q ss_pred hhc-eEEEEEEEcCCccEEEEEEEc-Cceecccc-------cccCCCceEEEEEeeeccchhhhhcccCCchh---hhhH
Q 012406 123 YVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPK-------ACAAVKGTQIMVENLFYNMIARRKTLQNSSDD---YTKI 190 (464)
Q Consensus 123 ~vs-~l~I~Srt~~~~~~~~~~~~~-G~~~~~~~-------~~~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e---~~~I 190 (464)
.+| +|+|+|| . +..+|++..+. |.....+. .....+||.|++. |+....+ -.+|
T Consensus 187 mVAdkV~V~Sk-~-dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~------------Lked~~e~le~~~i 252 (272)
T 3ied_A 187 LVSNRVEVYTK-K-EDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILH------------LKEECDEYLEDYKL 252 (272)
T ss_dssp GTEEEEEEEEE-S-SSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEE------------ECGGGGGGGSHHHH
T ss_pred ccCCEEEEEEc-C-CCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEE------------ECCChHHhcCHHHH
Confidence 888 6999999 4 44678876653 33322111 1135789999997 2222222 3579
Q ss_pred HHHHHHHHhh
Q 012406 191 VDLLSRMAIH 200 (464)
Q Consensus 191 ~~~l~~yAl~ 200 (464)
.+++.+|+-+
T Consensus 253 k~likkys~f 262 (272)
T 3ied_A 253 KELIKKYSEF 262 (272)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHHhC
Confidence 9999999854
No 33
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=99.11 E-value=4.3e-10 Score=129.80 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=123.2
Q ss_pred ccccccChhHHHhhcCCccccC----------------------------HHHHHHHHHHcchh---cC--CCeEEEEEe
Q 012406 20 PKIHRLEESVVNRIAAGEVIQR----------------------------PVSAVKELVENSLD---AD--ATSINVVVK 66 (464)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vI~~----------------------------~~~avkELIeNSlD---A~--At~I~I~i~ 66 (464)
..|+.|..--.-+.+.|.+|.+ +.+.+.|+|+||+| || ++.|.|+|+
T Consensus 10 ~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I~V~i~ 89 (1177)
T 4gfh_A 10 DKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIH 89 (1177)
T ss_dssp HHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred hcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeEEEEEE
Confidence 3799999999999999999875 56899999999999 34 478999998
Q ss_pred -eCCeeEEEEEeCCCCCCccc--------HHHh-HhhcccCCCccccccccccccCcccchhHhhhhhc-eEEEEEEEcC
Q 012406 67 -DGGLKLIQVSDDGHGIRYED--------LPIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKG 135 (464)
Q Consensus 67 -~~g~~~I~V~DNG~GI~~ed--------l~~l-~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs-~l~I~Srt~~ 135 (464)
++| .|+|.|||.|||.+- ++.+ +.-|+++|+. +-....+-|..|.+.+-...+| ++.|.+....
T Consensus 90 ~~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd---~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r 164 (1177)
T 4gfh_A 90 AEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD---DDEKKVTGGRNGYGAKLCNIFSTEFILETADLN 164 (1177)
T ss_dssp TTTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCC---CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETT
T ss_pred CCCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCcC---CCCCeEeccCCChhhhHHhhcCCceEEEEEEEc
Confidence 466 599999999999763 2334 4678999975 3233466789999988888888 5777776544
Q ss_pred CccEEEEEEEcCceecc-cc--cc-cCCCceEEEEEeeeccchhhhhcccCCchhhhhHHHHHHHHHhhCCCe
Q 012406 136 HLHGYRVSYRDGVMESE-PK--AC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNV 204 (464)
Q Consensus 136 ~~~~~~~~~~~G~~~~~-~~--~~-~~~~GTtV~V~~LF~n~PvRrk~lk~~~~e~~~I~~~l~~yAl~~p~v 204 (464)
...-|+..|.+|..... ++ .+ .+.+||+|++. |.-..+ ....-.++.+..++++++..++.+
T Consensus 165 ~Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~------PD~~iF-~~~~~~~d~l~~~~r~~~~l~~~~ 230 (1177)
T 4gfh_A 165 VGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTRF-GMKELDNDILGVMRRRVYDINGSV 230 (1177)
T ss_dssp TTEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEE------ECHHHH-TCSSCCHHHHHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEECCcccCCCCeeecCCCCCCceEEEEE------eCHHhc-CCcEeCHHHHHHHHHHHHHhcCCC
Confidence 44568999998864322 11 22 34689999985 443332 222233445556677777666543
No 34
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.49 E-value=2.3e-07 Score=80.85 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcchhcCCCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhHh
Q 012406 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALAS 120 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALaS 120 (464)
+..++.+||+||+.+....|.|.+.. ++.-.|.|.|||.||+.++++.++++|.+++-.. +-.|.+|+.
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~----------~g~GlGL~i 114 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR----------PGQGVGLAV 114 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC----------TTCCSCHHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccCCC----------CCcccCHHH
Confidence 67899999999999988888888864 3344699999999999999999999988765321 235677776
Q ss_pred hhhhc
Q 012406 121 MTYVG 125 (464)
Q Consensus 121 is~vs 125 (464)
+..+.
T Consensus 115 ~~~~~ 119 (152)
T 1id0_A 115 AREIT 119 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 35
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.41 E-value=4.4e-07 Score=86.37 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHcchhcCC-----CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcc
Q 012406 41 RPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~A-----t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfR 114 (464)
.+..++..||+||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|++|++.+-..- ...+-.
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~------~~~~G~ 211 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT------YEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------------C
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCC------CCCCCc
Confidence 366899999999999864 347777753 44457999999999999999999999987653210 111235
Q ss_pred cchhHhhhhh
Q 012406 115 GEALASMTYV 124 (464)
Q Consensus 115 GeALaSis~v 124 (464)
|.||+-...+
T Consensus 212 GLGL~i~~~i 221 (258)
T 2c2a_A 212 GLGLAITKEI 221 (258)
T ss_dssp CCTHHHHHHH
T ss_pred chHHHHHHHH
Confidence 7778755444
No 36
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=98.38 E-value=3.2e-07 Score=84.45 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcchhcCCC--eEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhH
Q 012406 42 PVSAVKELVENSLDADAT--SINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALA 119 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At--~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALa 119 (464)
+..++.+||+||+++... .|.|.+...+ |.|.|||.||++++++.+|++|.+++-.. -+-.|.+|+
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~~~~---i~V~D~G~Gi~~~~~~~if~~f~~~~~~~---------~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLNADN---FIVRDNGPGVTPEALARIGERFYRPPGQT---------ATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEECSSE---EEEECSCC-----------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEccCe---EEEEECCCCCCHHHHHHHHhhhccCCCCC---------CCcccccHH
Confidence 568999999999999744 5666665543 99999999999999999999998754211 123577787
Q ss_pred hhhhhc
Q 012406 120 SMTYVG 125 (464)
Q Consensus 120 Sis~vs 125 (464)
-+..+.
T Consensus 186 i~~~i~ 191 (222)
T 3jz3_A 186 IVQRIA 191 (222)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 37
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.38 E-value=2.1e-06 Score=74.83 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=53.9
Q ss_pred cCHHHHHHHHHHcchhcC-----CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCc
Q 012406 40 QRPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGF 113 (464)
Q Consensus 40 ~~~~~avkELIeNSlDA~-----At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~Gf 113 (464)
..+..++.|||+||+.++ ...|.|.+.. ++.-.|.|.|||.||+ +++.++.+|.+++-. .+-
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~----------~~~ 105 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE----------LER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCCC----------CCC
Confidence 356789999999999987 3678888753 4455799999999999 889999998877631 123
Q ss_pred ccchhHhhhhhce
Q 012406 114 RGEALASMTYVGH 126 (464)
Q Consensus 114 RGeALaSis~vs~ 126 (464)
.|.+|+-+..+..
T Consensus 106 ~GlGL~iv~~~~~ 118 (145)
T 1th8_A 106 SGMGFTIMENFMD 118 (145)
T ss_dssp CSCHHHHHHHHSS
T ss_pred CcchHHHHHHHHh
Confidence 5778887766653
No 38
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=98.35 E-value=1.4e-06 Score=76.97 Aligned_cols=76 Identities=24% Similarity=0.201 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHcchhcCCCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchhH
Q 012406 41 RPVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALA 119 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALa 119 (464)
.+..++.+||+||+.+....|.|.+.. ++.-.|.|.|||.||+.++++.+|++|.+++-... .+-.|.+|+
T Consensus 47 ~l~~il~nll~NAik~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~--------~~g~GlGL~ 118 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSART--------ISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCC--------CCCCSCCCC
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCC--------CCCcccCHH
Confidence 367899999999999998899998863 44557999999999999999999999988764311 123566666
Q ss_pred hhhhh
Q 012406 120 SMTYV 124 (464)
Q Consensus 120 Sis~v 124 (464)
-+..+
T Consensus 119 i~~~~ 123 (161)
T 1bxd_A 119 IVQRI 123 (161)
T ss_dssp TTHHH
T ss_pred HHHHH
Confidence 55443
No 39
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=98.27 E-value=1.3e-06 Score=83.06 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
+..++.+||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|.+|.+++- +-.|.+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~------------~g~GlGL 223 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR------------GGPGLGL 223 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS------------CCCTTHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC------------CCCcccH
Confidence 67899999999999864 578888864 44557999999999999999999999987653 2357788
Q ss_pred Hhhhhhc
Q 012406 119 ASMTYVG 125 (464)
Q Consensus 119 aSis~vs 125 (464)
+.+..+.
T Consensus 224 ~i~~~~~ 230 (268)
T 4ew8_A 224 ALVKALV 230 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 40
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=98.26 E-value=8.5e-07 Score=91.30 Aligned_cols=84 Identities=18% Similarity=0.134 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHcchhcCCC---------eEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccc
Q 012406 41 RPVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKS 110 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At---------~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t 110 (464)
.+..++.+||+||+.|... .|.|.+.. ++.-.|.|.|||.||++++++.+|++|++.+-..-.+......
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 3668999999999998532 68988865 3445799999999999999999999999876431000011123
Q ss_pred cCcccchhHhhhhh
Q 012406 111 MGFRGEALASMTYV 124 (464)
Q Consensus 111 ~GfRGeALaSis~v 124 (464)
.+-.|.||+-...+
T Consensus 323 ~~G~GLGL~Ivr~i 336 (407)
T 2q8g_A 323 LAGFGYGLPISRLY 336 (407)
T ss_dssp SSCTTCHHHHHHHH
T ss_pred CCCcCCCHHHHHHH
Confidence 44567888755444
No 41
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=98.25 E-value=9.9e-07 Score=90.41 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHcchhcCCC---------eEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccc
Q 012406 41 RPVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKS 110 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At---------~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t 110 (464)
.+..++.+||+||+.|... .|.|.+.. ++.-.|.|.|||.||++++++.+|++|++.+-....+......
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~ 309 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAP 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCC
Confidence 3678999999999998532 59998865 3445799999999999999999999999876431000011123
Q ss_pred cCcccchhHhhhhh
Q 012406 111 MGFRGEALASMTYV 124 (464)
Q Consensus 111 ~GfRGeALaSis~v 124 (464)
.+-.|.||+-...+
T Consensus 310 ~~G~GLGL~i~~~i 323 (394)
T 2e0a_A 310 LAGFGYGLPISRLY 323 (394)
T ss_dssp SSCSSCHHHHHHHH
T ss_pred CCCcccCHHHHHHH
Confidence 34467788755444
No 42
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.23 E-value=2.6e-06 Score=77.38 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcchhcC--------------CCeEEEEEee-CCeeEEEEEeCCCCCCcccH-------------------
Q 012406 42 PVSAVKELVENSLDAD--------------ATSINVVVKD-GGLKLIQVSDDGHGIRYEDL------------------- 87 (464)
Q Consensus 42 ~~~avkELIeNSlDA~--------------At~I~I~i~~-~g~~~I~V~DNG~GI~~edl------------------- 87 (464)
...++.+||+||++++ ...|.|.+.. ++.-.|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 127 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccc
Confidence 4556999999999985 4578888753 44557999999999999987
Q ss_pred -----HHhHhhcccCCCccccccccccccCcccchhHhhhhhc
Q 012406 88 -----PILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG 125 (464)
Q Consensus 88 -----~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~vs 125 (464)
+.+|++|.++|-.. ...+-.|.+|+.+..+.
T Consensus 128 ~~~~~~~if~~~~~~~~~~-------~~~~g~GlGL~iv~~~~ 163 (189)
T 1i58_A 128 DQEILNFLFVPGFSTKEKV-------SEVSGRGVGMDVVKNVV 163 (189)
T ss_dssp HHHHHGGGGSTTCSHHHHH-------HGGGTCCCHHHHHHHHH
T ss_pred hhhhHHHhcCCcccccccC-------CCCCCCccCHHHHHHHH
Confidence 77788877765321 11233578887665543
No 43
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=98.21 E-value=2.4e-06 Score=73.13 Aligned_cols=46 Identities=28% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcchhcC-CCeEEEEEee-CCeeEEEEEeCCCCCCcccH
Q 012406 42 PVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYEDL 87 (464)
Q Consensus 42 ~~~avkELIeNSlDA~-At~I~I~i~~-~g~~~I~V~DNG~GI~~edl 87 (464)
+..++.|||+||+.++ ++.|.|.+.. ++.-.|.|.|||.||+++++
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 4679999999999974 7889988863 44557999999999998865
No 44
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=98.20 E-value=1e-06 Score=91.18 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcchhcCCC----------eEEEEEeeC-CeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccc
Q 012406 42 PVSAVKELVENSLDADAT----------SINVVVKDG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKS 110 (464)
Q Consensus 42 ~~~avkELIeNSlDA~At----------~I~I~i~~~-g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t 110 (464)
+..++.+||+||+.|... .|.|.+..+ +.-.|.|.|||.||++++++.+|++|++.+-....+......
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~ 333 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAP 333 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------C
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCC
Confidence 578999999999998533 699988653 345799999999999999999999999876431000001122
Q ss_pred cCcccchhHhhhhh
Q 012406 111 MGFRGEALASMTYV 124 (464)
Q Consensus 111 ~GfRGeALaSis~v 124 (464)
.+-.|.||+-...+
T Consensus 334 ~~G~GLGL~I~k~i 347 (419)
T 1y8o_A 334 LAGFGYGLPISRLY 347 (419)
T ss_dssp C--CTTHHHHHHHH
T ss_pred cCCeecCHHHHHHH
Confidence 34457777755444
No 45
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=98.19 E-value=7.4e-06 Score=71.25 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHcchhcCC-CeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccchh
Q 012406 41 RPVSAVKELVENSLDADA-TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~A-t~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeAL 118 (464)
.+..++.+||+||++++. ..|.|.+.. ++.-.|.|.|||.||++++++.++++|.++.-.. -+-.|.+|
T Consensus 46 ~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~---------~~g~GlGL 116 (150)
T 1ysr_A 46 GLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTAS---------HSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--------------------CCC
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCCCC---------CCCCCcCH
Confidence 357899999999999864 467777753 4445799999999999999999999998643211 12346677
Q ss_pred Hhhhhh
Q 012406 119 ASMTYV 124 (464)
Q Consensus 119 aSis~v 124 (464)
+.+..+
T Consensus 117 ~i~~~~ 122 (150)
T 1ysr_A 117 ALVAQQ 122 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 46
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=98.17 E-value=2.3e-06 Score=74.66 Aligned_cols=72 Identities=21% Similarity=0.166 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHcchhcC---CCeEEEEEee-CC----------eeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccc
Q 012406 41 RPVSAVKELVENSLDAD---ATSINVVVKD-GG----------LKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQ 106 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~---At~I~I~i~~-~g----------~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~ 106 (464)
.+..++.+||.||+.+. ...|.|.+.. ++ .-.|.|.|||.||++++++.++++|.+++-
T Consensus 48 ~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~------- 120 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE------- 120 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------
Confidence 36789999999999975 5678887753 22 346999999999999999999999987652
Q ss_pred cccccCcccchhHhhhhh
Q 012406 107 SIKSMGFRGEALASMTYV 124 (464)
Q Consensus 107 ~~~t~GfRGeALaSis~v 124 (464)
+-.|.+|+.+..+
T Consensus 121 -----~g~GlGL~i~~~~ 133 (160)
T 1r62_A 121 -----GGTGLGLSIARNL 133 (160)
T ss_dssp --------CHHHHHHHHH
T ss_pred -----CCCccCHHHHHHH
Confidence 2257778766554
No 47
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=98.15 E-value=9.8e-06 Score=75.50 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHcchhcC--CCeEEEEEe-eCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch
Q 012406 41 RPVSAVKELVENSLDAD--ATSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~--At~I~I~i~-~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
.+..++.+||.||+++. ...|.|.+. .++.-.|.|.|||.||++++++.+|.+|.++|-. +-.|.+
T Consensus 123 ~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~-----------~g~GlG 191 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV-----------KGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG-----------GCCSCH
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCCC-----------CCcchh
Confidence 36789999999999996 567777775 3455579999999999999999999999887621 124777
Q ss_pred hHhhhhhc
Q 012406 118 LASMTYVG 125 (464)
Q Consensus 118 LaSis~vs 125 (464)
|+.+..+.
T Consensus 192 L~i~~~i~ 199 (244)
T 3d36_A 192 MMVVYRII 199 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87665543
No 48
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=98.14 E-value=1.6e-06 Score=88.81 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHcchhcCC---------CeEEEEEeeC-CeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccc
Q 012406 41 RPVSAVKELVENSLDADA---------TSINVVVKDG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKS 110 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~A---------t~I~I~i~~~-g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t 110 (464)
.+..++.+||.||++|.. ..|.|.+..+ +.-.|.|.|||.||++++++.+|++|++.+-....+ .....
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~-~~~~~ 309 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPG-TGGTP 309 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC-----------
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcc-cCCCC
Confidence 367899999999999852 2599988653 345799999999999999999999999876431000 01122
Q ss_pred cCcccchhHhhhhh
Q 012406 111 MGFRGEALASMTYV 124 (464)
Q Consensus 111 ~GfRGeALaSis~v 124 (464)
.+-.|.||+-...+
T Consensus 310 ~~G~GLGL~i~~~i 323 (394)
T 2btz_A 310 LAGFGYGLPISRLY 323 (394)
T ss_dssp ----CCHHHHHHHH
T ss_pred CCCccCCHHHHHHH
Confidence 34457777755444
No 49
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=98.12 E-value=5.4e-06 Score=84.56 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHcchhcCCC----------eEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCC
Q 012406 41 RPVSAVKELVENSLDADAT----------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~At----------~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~ 99 (464)
.+..++.+||.||++|... .|.|.+.. ++.-.|.|.|||.||++++++.+|++|++.+-
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~ 307 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAE 307 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCC
Confidence 4678999999999998532 79998865 34457999999999999999999999988875
No 50
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=98.10 E-value=3.5e-06 Score=73.00 Aligned_cols=72 Identities=21% Similarity=0.164 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHcchhcC--CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccch
Q 012406 41 RPVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~--At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGeA 117 (464)
.+..++.+||+||+.+. ...|.|.+.. ++.-.|.|.|||.||+.++++.++++|.+++- +-.|.+
T Consensus 47 ~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~------------~g~GlG 114 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------------QGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------------CCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC------------CCCCcC
Confidence 46789999999999985 5688888864 34457999999999999999999999987652 124667
Q ss_pred hHhhhhh
Q 012406 118 LASMTYV 124 (464)
Q Consensus 118 LaSis~v 124 (464)
|+.+..+
T Consensus 115 L~i~~~~ 121 (152)
T 3a0y_A 115 LSICRKI 121 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765443
No 51
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=98.09 E-value=1.3e-05 Score=71.81 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcchhcCC--CeEEEEE--ee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccccccccccccCcccc
Q 012406 42 PVSAVKELVENSLDADA--TSINVVV--KD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGE 116 (464)
Q Consensus 42 ~~~avkELIeNSlDA~A--t~I~I~i--~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~~dl~~~~t~GfRGe 116 (464)
+..++.+||.||+++.. ..|.|.+ .. ++.-.|.|.|||.||+.+++..++.+|.+++... ....+-.|.
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~------~~~~~g~Gl 117 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKAR------TRKLGGTGL 117 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCC------CCCCCCCCc
Confidence 67899999999999863 4555555 43 4445799999999999999999999988754321 122344677
Q ss_pred hhHhhhhhc
Q 012406 117 ALASMTYVG 125 (464)
Q Consensus 117 ALaSis~vs 125 (464)
+|+.+..+.
T Consensus 118 GL~iv~~~~ 126 (177)
T 3sl2_A 118 GLAIAKEMV 126 (177)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 887665543
No 52
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=98.04 E-value=6.9e-06 Score=75.77 Aligned_cols=46 Identities=28% Similarity=0.189 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcchhcC-CCeEEEEEe-eCCeeEEEEEeCCCCCCcccH
Q 012406 42 PVSAVKELVENSLDAD-ATSINVVVK-DGGLKLIQVSDDGHGIRYEDL 87 (464)
Q Consensus 42 ~~~avkELIeNSlDA~-At~I~I~i~-~~g~~~I~V~DNG~GI~~edl 87 (464)
+..++.||+.||+.++ ++.|.|.+. .++.-.|.|.|||+||+++++
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 4578999999999974 678888886 345557999999999998865
No 53
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=98.03 E-value=7.9e-06 Score=83.58 Aligned_cols=85 Identities=21% Similarity=0.347 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcchhcC--------------CCeEEEEEe-eCCeeEEEEEeCCCCCCcccH-------------------
Q 012406 42 PVSAVKELVENSLDAD--------------ATSINVVVK-DGGLKLIQVSDDGHGIRYEDL------------------- 87 (464)
Q Consensus 42 ~~~avkELIeNSlDA~--------------At~I~I~i~-~~g~~~I~V~DNG~GI~~edl------------------- 87 (464)
..+++.+||.||+|++ ...|.|.+. .++.-.|+|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~ 186 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 186 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCC
Confidence 4566999999999997 346888775 355567999999999999987
Q ss_pred -----HHhHhhcccCCCccccccccccccCcccchhHhhhhh-----ceEEEEEEE
Q 012406 88 -----PILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYV-----GHVTVTTIT 133 (464)
Q Consensus 88 -----~~l~~r~~TSK~~~~~dl~~~~t~GfRGeALaSis~v-----s~l~I~Srt 133 (464)
+.+|++|++++-. ....+-+|.+|+-+..+ +.++|.|..
T Consensus 187 ~~~~~~~iF~p~fst~~~-------~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~ 235 (379)
T 1b3q_A 187 DQEILNFLFVPGFSTKEK-------VSEVSGRGVGMDVVKNVVESLNGSMGIESEK 235 (379)
T ss_dssp THHHHSGGGSTTCC------------------CCCSHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHhcCCCCccCCc-------cCCCCCccccHHHHHHHHHHCCCEEEEEEcC
Confidence 6788887766532 12245578888755433 367777763
No 54
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.97 E-value=6.2e-06 Score=81.11 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHcchhcC--CCeEEEEEee-CCeeEEEEEeCCCCCCcccHHHhHhhcccCC
Q 012406 41 RPVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~--At~I~I~i~~-~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK 98 (464)
.+..++.+||.||+++. +..|.|.+.. ++.-.|.|.|||.||++++++.+|++|.++|
T Consensus 244 ~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~ 304 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 304 (349)
T ss_dssp HHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCC
Confidence 36789999999999986 5688888864 4455799999999999999999999999876
No 55
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.94 E-value=4.3e-05 Score=64.55 Aligned_cols=46 Identities=30% Similarity=0.393 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHcchhcC-CCeEEEEEeeCCeeEEEEEeCCCCCCccc
Q 012406 41 RPVSAVKELVENSLDAD-ATSINVVVKDGGLKLIQVSDDGHGIRYED 86 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~-At~I~I~i~~~g~~~I~V~DNG~GI~~ed 86 (464)
.+..++.|||.||++++ +..|.|.+...+.-.|.|.|||.||++++
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~~~~~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKVDDDLCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEESSEEEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEEcCCEEEEEecCCCCCCccc
Confidence 46788999999999987 78899888643225799999999999775
No 56
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.93 E-value=1.6e-05 Score=66.99 Aligned_cols=45 Identities=29% Similarity=0.371 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHcchhcC-CCeEEEEEee-CCeeEEEEEeCCCCCCccc
Q 012406 41 RPVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~-At~I~I~i~~-~g~~~I~V~DNG~GI~~ed 86 (464)
.+..++.||++||+.++ ++.|.|.+.. ++ -.|+|.|||.||++++
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 45689999999999975 5688888853 33 5699999999999875
No 57
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=97.18 E-value=0.0013 Score=62.64 Aligned_cols=58 Identities=19% Similarity=0.044 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHcchhcCC--CeEEEEEe-eCCeeEEEEEeCCCC--CCcccHHHhHhhcccCC
Q 012406 41 RPVSAVKELVENSLDADA--TSINVVVK-DGGLKLIQVSDDGHG--IRYEDLPILCERHTTSK 98 (464)
Q Consensus 41 ~~~~avkELIeNSlDA~A--t~I~I~i~-~~g~~~I~V~DNG~G--I~~edl~~l~~r~~TSK 98 (464)
...+++-.|+.||++|-. ..|.|.+. .++...|.|.|+|.| |+++.++.+|.+|.++|
T Consensus 146 ~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~ 208 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEG 208 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC
Confidence 356889999999999953 46888775 355557999999988 55666677777776655
No 58
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=95.19 E-value=0.031 Score=57.16 Aligned_cols=47 Identities=28% Similarity=0.274 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHHcchhcC-----CCeEEEEEee--CCeeEEEEEeCCCCCCcc
Q 012406 39 IQRPVSAVKELVENSLDAD-----ATSINVVVKD--GGLKLIQVSDDGHGIRYE 85 (464)
Q Consensus 39 I~~~~~avkELIeNSlDA~-----At~I~I~i~~--~g~~~I~V~DNG~GI~~e 85 (464)
.....-+|.||+.||+..+ ...|.|.+.. ++.-.|.|.|+|.|+++.
T Consensus 295 ~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 295 IADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC
Confidence 4567789999999999986 6788888864 334579999999999865
No 59
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=93.74 E-value=0.051 Score=50.34 Aligned_cols=49 Identities=6% Similarity=0.082 Sum_probs=32.9
Q ss_pred HHHHHHHcchhc--------CCCeEEEEEeeC---CeeEEEEEeCCCCCCcccHHHhHhh
Q 012406 45 AVKELVENSLDA--------DATSINVVVKDG---GLKLIQVSDDGHGIRYEDLPILCER 93 (464)
Q Consensus 45 avkELIeNSlDA--------~At~I~I~i~~~---g~~~I~V~DNG~GI~~edl~~l~~r 93 (464)
.+..|++|+++| ....|.|.+... +.-.|.|.|+|+||+++.+..+|+.
T Consensus 109 ~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~ 168 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQN 168 (192)
T ss_dssp HHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC-----
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhC
Confidence 345566666665 246799988764 4457999999999999988877763
No 60
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=33.29 E-value=33 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=21.6
Q ss_pred chhcCCCeEEEEEee-CC-eeEEEEEeCCCC
Q 012406 53 SLDADATSINVVVKD-GG-LKLIQVSDDGHG 81 (464)
Q Consensus 53 SlDA~At~I~I~i~~-~g-~~~I~V~DNG~G 81 (464)
+-|||...+.|.|.. +| ...++|.|||.|
T Consensus 33 ~~~aG~~~l~v~i~~~~g~~~~~~v~d~~dG 63 (100)
T 3rgh_A 33 CSSAGSAELTIEICSEAGLPAEVYIQDHGDG 63 (100)
T ss_dssp CTTSCSCCEEEEEECTTSCBCEEEEEECSSS
T ss_pred ECCCCCceEEEEEECCCCCEeEEEEEeCCCC
Confidence 346888889999852 33 346899999988
No 61
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=31.94 E-value=50 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=21.1
Q ss_pred chhcCCCeEEEEEeeCCeeEEEEEeCCCCC
Q 012406 53 SLDADATSINVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 53 SlDA~At~I~I~i~~~g~~~I~V~DNG~GI 82 (464)
+.|||...+.|.|.......++|.||+.|.
T Consensus 28 ~~dag~~~~~v~v~gp~~~~~~v~d~~dGt 57 (94)
T 2w0p_A 28 TREAGAGGLAIAVEGPSKAEISFEDRKDGS 57 (94)
T ss_dssp CGGGCSCCEEEEEEESSCCEEEEEECTTSC
T ss_pred EcCCCCCcEEEEEECCCCCeEEEEECCCCE
Confidence 456787788888864332358899999874
No 62
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=27.31 E-value=57 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=20.9
Q ss_pred chhcCCCeEEEEEeeCCeeEEEEEeCCCCC
Q 012406 53 SLDADATSINVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 53 SlDA~At~I~I~i~~~g~~~I~V~DNG~GI 82 (464)
+.|||...+.|.+.......++|.||+.|.
T Consensus 31 t~dag~~~l~v~v~~p~~~~~~v~d~~dGt 60 (97)
T 2bp3_A 31 TKDAGEGGLSLAIEGPSKAEISCTDNQDGT 60 (97)
T ss_dssp CTTCCSEEEEEEEEESSCCEEEEEECSSSE
T ss_pred ECCCCCCcEEEEEECCCCCEEEEEECCCCE
Confidence 457777788888864332357889999873
No 63
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=27.00 E-value=22 Score=31.62 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=29.4
Q ss_pred HHHHHHHHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCCCCcccHHHhHhhcccCCCccc
Q 012406 43 VSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKY 102 (464)
Q Consensus 43 ~~avkELIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~GI~~edl~~l~~r~~TSK~~~~ 102 (464)
..||.++++-+--.-++.|.+.|...| |++.||-. ...++||+.-..-+|
T Consensus 36 ~kAv~~~l~~~~~~~~t~V~fkVS~qG---ItLtD~~r-------K~FfrrHypl~~IsF 85 (157)
T 3hqc_A 36 ARASSAALSCSPRPTPAVVHFKVSAQG---ITLTDNQR-------KLFFRRHYPVNSITF 85 (157)
T ss_dssp HHHHHHHHHCC---CCEEEEEEEETTE---EEEEEEET-------TEEEEEEEEGGGEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEEEEeCCC---ceEEeccc-------ceeehhcCcccceEe
Confidence 356677766443335667888888776 88999864 223466664433333
No 64
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=26.33 E-value=49 Score=29.56 Aligned_cols=70 Identities=7% Similarity=0.134 Sum_probs=44.4
Q ss_pred eeEEEEEE-eCCCCCCCCceEEEEEcCc---ccCC--hHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCC
Q 012406 257 VFKMDGYV-SNSNYVAKKTTMVLFVNDR---LVEC--APLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKR 330 (464)
Q Consensus 257 ~~~i~G~i-s~~~~~~kk~~~~lFIN~R---~V~~--~~L~kaI~~vy~~~lpk~~~Pf~~L~I~i~p~~vDVNVhPtK~ 330 (464)
++++.||+ ++.+ ..+++-++.+ .++. ..|+..+.++++.|..--..||+ ++|
T Consensus 76 ~~~VYGy~iTnt~-----vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l~NPFy-----------~~~------ 133 (162)
T 3pr6_A 76 GVSVFAMLIKQTG-----LKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLL-----------VSG------ 133 (162)
T ss_dssp TEEEEEEECTTTC-----CEEEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTG-----------GGS------
T ss_pred CeEEEEEEEcCCc-----eEEEEEEccCCcccccchHHHHHHHHHHHHHHHHHHhcCCCC-----------CCC------
Confidence 48999997 8664 2244555555 3444 67777777777766432234553 332
Q ss_pred eEecCChhHHHHHHHHHHHHHHh
Q 012406 331 EVSLLNQELIVEKIQSAVELKLR 353 (464)
Q Consensus 331 eV~F~~e~~Ii~~I~~~l~~~L~ 353 (464)
+++++.+.+.+.+.+.+-
T Consensus 134 -----d~~~~~~~l~~~~~~~f~ 151 (162)
T 3pr6_A 134 -----DEKSIIKSLERKFDELFI 151 (162)
T ss_dssp -----CHHHHHHHHHHHHHHHHC
T ss_pred -----chHHHHHHHHHHHHHHHh
Confidence 667888888888877653
No 65
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.72 E-value=50 Score=26.60 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=21.9
Q ss_pred chhcCCCeEEEEEeeCCeeEEEEEeCCCCC
Q 012406 53 SLDADATSINVVVKDGGLKLIQVSDDGHGI 82 (464)
Q Consensus 53 SlDA~At~I~I~i~~~g~~~I~V~DNG~GI 82 (464)
+.|||...+.|.|.......++|.||+.|.
T Consensus 36 t~dag~~~l~v~v~~p~~~~v~v~d~~dGt 65 (105)
T 2ee6_A 36 TREAGAGGLSIAVEGPSKAEITFDDHKNGS 65 (105)
T ss_dssp CSSSCCCCEEEEEESSSCEEEEECCCCSSC
T ss_pred ECCCCCCcEEEEEECCCCCEEEEEECCCCE
Confidence 557788888888864333357899999884
No 66
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Probab=23.19 E-value=69 Score=25.15 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=21.2
Q ss_pred chhcCCCeEEEEEee--CCeeEEEEEeCCCCC
Q 012406 53 SLDADATSINVVVKD--GGLKLIQVSDDGHGI 82 (464)
Q Consensus 53 SlDA~At~I~I~i~~--~g~~~I~V~DNG~GI 82 (464)
+.|||...+.|.+.. +....++|.|||.|.
T Consensus 31 ~~~aG~~~l~v~v~~p~~~~~~~~v~d~~dGt 62 (96)
T 1v05_A 31 CSKAGTNMMMVGVHGPKTPCEEVYVKHMGNRV 62 (96)
T ss_dssp CTTSBSCCEEEEEECSSSCCSEEEEEECSTTE
T ss_pred EeCCCCCcEEEEEECCCCCeeEEEEEeCCCCE
Confidence 347888888888863 223368899999874
No 67
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.62 E-value=58 Score=27.36 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=22.7
Q ss_pred HHHcchhcCCCeEEEEEeeCCeeEEEEEeCCCC
Q 012406 49 LVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81 (464)
Q Consensus 49 LIeNSlDA~At~I~I~i~~~g~~~I~V~DNG~G 81 (464)
..=++.|||...+.|.|.......+.+.||+.|
T Consensus 42 F~v~t~daG~~~l~v~i~gp~~~~~~~~d~~dG 74 (125)
T 2eec_A 42 FFINTTRAGPGTLSVTIEGPSKVKMDCQETPEG 74 (125)
T ss_dssp EEEECTTTCSCCEEEEEESSSCCCCEEEECSSS
T ss_pred EEEEEcCCCCCcEEEEEECCCCCcceeEECCCC
Confidence 334577888888998887432224678888876
No 68
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=21.35 E-value=65 Score=26.59 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=20.3
Q ss_pred chhcCCCeEEEEEeeCCeeEEEEEeCCCC
Q 012406 53 SLDADATSINVVVKDGGLKLIQVSDDGHG 81 (464)
Q Consensus 53 SlDA~At~I~I~i~~~g~~~I~V~DNG~G 81 (464)
+.|||...+.|.|.......++|.||+.|
T Consensus 43 t~dag~~~l~v~v~~p~~~~~~v~d~~dG 71 (119)
T 2k9u_A 43 TREAGAGGLSIAVEGPSKAEIAFEDRKDG 71 (119)
T ss_dssp CCSSCSEEEEEEEESSSCCEEEEECCSSS
T ss_pred ECCCCCCcEEEEEeCCCCCeEEEEECCCC
Confidence 55778888888886422235788888887
No 69
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=20.47 E-value=66 Score=26.21 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=22.4
Q ss_pred chhcCCCeEEEEEee-CC-eeEEEEEeCCCCC
Q 012406 53 SLDADATSINVVVKD-GG-LKLIQVSDDGHGI 82 (464)
Q Consensus 53 SlDA~At~I~I~i~~-~g-~~~I~V~DNG~GI 82 (464)
+-|||...+.|.|.. +| ...++|.|||.|.
T Consensus 36 ~~daG~~~l~v~i~~~~g~~~~~~v~d~~dGt 67 (113)
T 2dia_A 36 CSEAGPGALGLEAVSDSGTKAEVSIQNNKDGT 67 (113)
T ss_dssp ESSCCSCCEEEEEEETTTEECEEEEEECTTSE
T ss_pred ECCCCCccEEEEEECCCCCEeeEEEEECCCCE
Confidence 457898899998853 33 3468999999874
No 70
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=20.14 E-value=68 Score=24.82 Aligned_cols=30 Identities=20% Similarity=0.116 Sum_probs=21.4
Q ss_pred chhcCCCeEEEEEee-CC-eeEEEEEeCCCCC
Q 012406 53 SLDADATSINVVVKD-GG-LKLIQVSDDGHGI 82 (464)
Q Consensus 53 SlDA~At~I~I~i~~-~g-~~~I~V~DNG~GI 82 (464)
+-|||...+.|.|.. .+ ...++|.|||.|.
T Consensus 24 ~~~aG~~~l~v~v~~p~g~~~~~~v~d~~dGt 55 (89)
T 3cnk_A 24 CSKAGNNMLLVGVHGPRTPCEEILVKHVGSRL 55 (89)
T ss_dssp CTTSCSCCEEEEEECSSSCCSEEEEEEEETTE
T ss_pred ECcCCCCcEEEEEECCCCCceeEEEEECCCCE
Confidence 557888888888863 22 2368899998873
Done!