BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012407
         (464 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IG8|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
           Complex With Mg2+, L-Glutamate And Adp
 pdb|3LVV|A Chain A, Bso-Inhibited Scgcl
 pdb|3LVW|A Chain A, Glutathione-Inhibited Scgcl
          Length = 692

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 235 DFTPIILVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNL--FWKNAY 288
           +F PI+L  +++           +  WN I GA DD     RG+ P L  + KN +
Sbjct: 288 NFAPIMLAFSAAAPAFKGWLADQDVRWNVISGAVDDRTPKERGVAPLLPKYNKNGF 343


>pdb|3IG5|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
           Complex With Mg2+ And L-Glutamate
          Length = 692

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 235 DFTPIILVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNL--FWKNAY 288
           +F PI+L  +++           +  WN I GA DD     RG+ P L  + KN +
Sbjct: 288 NFAPIMLAFSAAAPAFKGWLADQDVRWNVISGAVDDRTPKERGVAPLLPKYNKNGF 343


>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
           Sulfolobus Tokodaii
 pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
           Sulfolobus Tokodaii
          Length = 429

 Score = 29.3 bits (64), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 88  LHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGGVVLAK 147
           +H+    G K   I+ D T  G+   D  S    I   +   SV + R      G+V A 
Sbjct: 25  VHLLRDLGGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVR------GIVKAD 78

Query: 148 GNASDEHEKSTSQFTADWDCSLHLPLWVSDTEKAAIDDRVEEWIKEL 194
             A    E    + T        LPL VS   KA ID R+ E + +L
Sbjct: 79  KRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDL 125


>pdb|2LBO|A Chain A, Eimeria Tenella Microneme Protein 3 Mar_b Domain
          Length = 123

 Score = 28.9 bits (63), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 121 PIWTCVLNRSVYKYRKKMCNGGVVLAKGNA--SDEHEKSTSQFTADWDCSLHLPLWVSDT 178
           P     L+R   ++ K+ CN G+    G A  +   + ++SQ T +W C +   L  S +
Sbjct: 2   PTLQEALDRKCAQFGKESCNSGLASYCGAAIYARYDKGNSSQQTKEWRCYIEKELDFSKS 61

Query: 179 EKAAIDD 185
               +DD
Sbjct: 62  GDGCVDD 68


>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
           Protein (Hp1451)
 pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
           Protein (Hp1451)
 pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
           Protein (Hp1451)
 pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
           Protein (Hp1451)
 pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
           Protein (Hp1451)
 pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
           Protein (Hp1451)
          Length = 330

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 420 FSLLRNLPSAVNFVKLNISKGKTLLIC--CHSGKDFYLPSYLE 460
           ++LL N   A++ +K  I+ GK +++C    SGK  Y+ S +E
Sbjct: 151 YNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIME 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,875,219
Number of Sequences: 62578
Number of extensions: 562021
Number of successful extensions: 1133
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 7
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)