BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012407
         (464 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q10181|YAW6_SCHPO Uncharacterized protein C3F10.06c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC3F10.06c PE=4 SV=1
          Length = 453

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 160/288 (55%), Gaps = 33/288 (11%)

Query: 25  NALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSSKFHS--TCYFKSTDGHTNNWSFN 82
           N L SI  D+ FV  +   +P    + N RCG WY ++ H+  + YFKSTDGHT  WSF+
Sbjct: 22  NRLLSIAHDAKFVDSVIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGHTGQWSFS 81

Query: 83  TSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGG 142
             RLNLH+        G IIVDSTR+GKR PD++SKTIPIW   LN+ V++  +      
Sbjct: 82  CRRLNLHLLNEITTCDGLIIVDSTRRGKRMPDALSKTIPIWIATLNKCVFERLRPHSFPN 141

Query: 143 VVLAKGNASDEHEKSTSQFTADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIA 202
             LA                        LP ++ DTEK++I  R++ ++  L  SG D+ 
Sbjct: 142 ARLA-----------------------FLPPFLPDTEKSSILQRLDGFVDSLMQSGIDLD 178

Query: 203 SLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGIIQNRTTSEFSWN 262
           +LA+ L KP+RPLW++  + +   +  ++    FT ++LV+AS+Q   +QN  + E  + 
Sbjct: 179 ALAAKLTKPIRPLWVTPASRLTSAQFEEY----FT-VVLVTASAQ---VQNGYSREHGFL 230

Query: 263 YIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDR 310
           Y+ GA DDEE W+ GLTP +FW+N   ++    +   QK++ ++   R
Sbjct: 231 YVQGAADDEEEWSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTR 278


>sp|P23796|RIT1_YEAST tRNA A64-2'-O-ribosylphosphate transferase OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RIT1 PE=1
           SV=3
          Length = 513

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 153/303 (50%), Gaps = 46/303 (15%)

Query: 1   MENEANISIYRAARTIKRRQNTLYNALRSIYDDSIFVGE-ISQLWPQLPLLANLRCGLWY 59
           M+    +S+ +  + I++   ++ N L+SI  D+ F+ + +  ++P  PL+ N RCGLWY
Sbjct: 20  MDENIYLSLSQINKDIRKENKSVRNRLQSILLDNKFLQDRVIPIFPHYPLIPNERCGLWY 79

Query: 60  --SSKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMS 117
              S F  T YFKSTDGH N W F+T RLN H+        G IIVDSTR+GK+ PD++S
Sbjct: 80  CNPSSFKQTSYFKSTDGHVNQWDFSTRRLNFHLLETIRDNKGIIIVDSTRRGKKIPDALS 139

Query: 118 KTIPIWTCVLNRSVYKYRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHL-PLWVS 176
           KT+PIW  VLN  + +                   E EK+ +      D  L+L P  V 
Sbjct: 140 KTVPIWCAVLNTLMLQ-------------------ETEKNVA-----IDKVLYLPPETVP 175

Query: 177 DTEKAAIDDRVEEWIKELDASG-ADIASLASC-LKKPLRPLWISQKTVI-------WLNE 227
            +E   I  ++ E + +L      D   L    + K LRP+W+   + +       +  E
Sbjct: 176 KSEYDMIKRKIPELVAKLQKLNIIDSKKLNELFMGKLLRPIWVHPGSSLLDHSVDYFTGE 235

Query: 228 VPDHDSWD------FTPIILVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPN 281
           V ++++W+        PIIL + S Q+   Q+     + + Y+ GA DD E W+ GL  N
Sbjct: 236 VQEYEAWETPEDQNIIPIILCTVSYQA---QDGMDKRYGFTYVQGAADDHELWSFGLDSN 292

Query: 282 LFW 284
           +FW
Sbjct: 293 MFW 295


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,469,662
Number of Sequences: 539616
Number of extensions: 7216285
Number of successful extensions: 16365
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 16354
Number of HSP's gapped (non-prelim): 13
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)