Query 012407
Match_columns 464
No_of_seqs 117 out of 146
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04179 Init_tRNA_PT: Initiat 100.0 7E-143 1E-147 1119.3 31.6 384 15-463 1-399 (451)
2 KOG2634 Initiator tRNA phospho 100.0 1E-124 3E-129 937.2 22.5 417 3-450 10-429 (476)
3 smart00195 DSPc Dual specifici 97.8 3.4E-05 7.3E-10 68.0 6.3 91 370-463 6-101 (138)
4 cd00127 DSPc Dual specificity 97.8 3.3E-05 7.2E-10 67.4 6.0 93 369-463 6-104 (139)
5 PF00782 DSPc: Dual specificit 97.7 2.5E-05 5.4E-10 68.1 3.7 78 384-463 17-96 (133)
6 PRK12361 hypothetical protein; 96.5 0.0053 1.1E-07 66.9 7.0 92 369-463 99-198 (547)
7 KOG1716 Dual specificity phosp 96.1 0.011 2.4E-07 59.6 6.0 93 369-463 79-178 (285)
8 KOG2634 Initiator tRNA phospho 94.5 0.028 6E-07 58.8 3.2 80 384-463 340-426 (476)
9 KOG1717 Dual specificity phosp 93.6 0.11 2.3E-06 53.0 5.2 92 369-463 176-274 (343)
10 COG2453 CDC14 Predicted protei 87.2 0.46 1E-05 44.7 2.7 56 405-463 73-128 (180)
11 PTZ00242 protein tyrosine phos 84.2 3 6.4E-05 39.1 6.5 102 362-463 9-121 (166)
12 PF03162 Y_phosphatase2: Tyros 81.4 1.4 3.1E-05 41.3 3.2 54 403-458 55-109 (164)
13 KOG1718 Dual specificity phosp 77.5 6.5 0.00014 38.0 6.3 92 369-463 21-117 (198)
14 TIGR01244 conserved hypothetic 75.3 3.5 7.7E-05 37.0 3.8 44 404-455 57-100 (135)
15 KOG1719 Dual specificity phosp 72.6 4 8.6E-05 39.0 3.5 41 423-463 92-132 (183)
16 PTZ00393 protein tyrosine phos 69.1 5.8 0.00013 39.9 4.0 57 404-463 137-193 (241)
17 smart00404 PTPc_motif Protein 63.3 6.4 0.00014 31.8 2.6 23 440-462 39-61 (105)
18 smart00012 PTPc_DSPc Protein t 63.3 6.4 0.00014 31.8 2.6 23 440-462 39-61 (105)
19 PF13350 Y_phosphatase3: Tyros 57.7 7.1 0.00015 35.8 2.1 15 440-454 124-138 (164)
20 PF05706 CDKN3: Cyclin-depende 57.0 13 0.00029 35.5 3.9 55 405-462 101-155 (168)
21 PF04273 DUF442: Putative phos 54.7 13 0.00029 32.7 3.2 70 383-459 25-105 (110)
22 COG1908 FrhD Coenzyme F420-red 38.1 29 0.00062 31.9 2.7 27 173-199 100-126 (132)
23 cd08047 TAF7 TATA Binding Prot 33.5 32 0.00068 32.3 2.4 45 265-309 101-151 (162)
24 PF02012 BNR: BNR/Asp-box repe 33.1 21 0.00046 20.2 0.7 6 69-74 1-6 (12)
25 PF09550 DUF2376: Conserved hy 32.6 20 0.00044 27.0 0.7 10 277-286 2-11 (43)
26 COG2365 Protein tyrosine/serin 28.3 56 0.0012 32.5 3.3 24 430-453 125-149 (249)
27 COG0595 mRNA degradation ribon 28.1 53 0.0012 36.9 3.4 41 69-109 154-203 (555)
28 PF04658 TAFII55_N: TAFII55 pr 26.5 59 0.0013 30.8 2.9 43 267-309 110-157 (162)
29 COG2351 Transthyretin-like pro 22.1 33 0.00072 31.3 0.3 21 51-71 49-80 (124)
30 cd00047 PTPc Protein tyrosine 20.3 91 0.002 29.7 2.9 22 439-460 165-186 (231)
No 1
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=100.00 E-value=6.7e-143 Score=1119.27 Aligned_cols=384 Identities=45% Similarity=0.815 Sum_probs=338.5
Q ss_pred HhhhhcCChhHhhhhhHHhHHHHHHHHHhcCCCCccccccccccccc--CCCceeeeecCCCCCccccccccccchhHHH
Q 012407 15 TIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSS--KFHSTCYFKSTDGHTNNWSFNTSRLNLHVAL 92 (464)
Q Consensus 15 ~lkr~~~sl~NRL~SI~~D~~FV~~v~~~~~~lPlvaNeRCG~WY~~--~~~~s~YFKSTDGH~~~W~FS~rRLNLhll~ 92 (464)
+|||+++|||||||||++|++||++|++.| +||||||||||+||+| .+++||||||||||||||+||+||||||||+
T Consensus 1 ~l~r~~~s~~NrL~SI~~D~~Fv~~v~~~~-~~plvaN~RCG~WYv~p~~~~~s~YFKSTDGH~~~W~Fs~rRlNlhll~ 79 (451)
T PF04179_consen 1 DLKRESLSLYNRLQSILHDAKFVREVAALY-QLPLVANERCGLWYVPPDSKAGSAYFKSTDGHTGQWSFSLRRLNLHLLP 79 (451)
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhh-cCcccccccccccccCccccCcceEEeccCCCCCccccccccccHHHHH
Confidence 589999999999999999999999999999 8999999999999996 6899999999999999999999999999999
Q ss_pred HhhccCceEEEcCCCCCCCCCCCcccccchHHHHHHHHhhhhhhhhcCCCcccccCCCCccccccccccCCCCCCCccCC
Q 012407 93 LAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGGVVLAKGNASDEHEKSTSQFTADWDCSLHLP 172 (464)
Q Consensus 93 ~i~~~gG~iIVDSTRrGKr~PDAlSKTIPIWcaVlNr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~P 172 (464)
+|+++||||||||||||||||||||||||||||||||++++... .. ..+|++.||+|
T Consensus 80 ~~~~~~G~iiVDsTRrGK~~PDalSkTiPIWcaVlN~~~~~~~~------------~~-----------~~~~~~~l~~P 136 (451)
T PF04179_consen 80 LIAEHGGCIIVDSTRRGKRMPDALSKTIPIWCAVLNRALFPSKP------------DE-----------SDDWDHWLHTP 136 (451)
T ss_pred HhhcCCcEEEEecccCCCCCChhhhccccHHHHHHHHHHcccCc------------cc-----------cccccccccCC
Confidence 99999999999999999999999999999999999999999861 11 12799999988
Q ss_pred C-CCCccHHHHHHhhhHHHHHHHHHcCCChHHHHhhcCCCeeeEeeecCCccCCCCCCCCCCCCeeEEEEeecCcccccc
Q 012407 173 L-WVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIWLNEVPDHDSWDFTPIILVSASSQSGII 251 (464)
Q Consensus 173 ~-~Vs~sE~~qI~~~i~~~v~~l~~~~~Dl~~l~~~L~KPLRP~Wi~~~~~~~~~~~~~~~~~df~piil~SaS~~v~~~ 251 (464)
+ |||+|||+||++|||+||++|+++++|++.|+++|+|||||+||+|++. +.++.++...++||||||||||+++
T Consensus 137 ~~~v~~sE~~qI~~~i~~fv~~l~~~~~d~~~l~~~L~KPLrp~Wi~~~~~-~~~~~~~~~~~~f~piil~SAS~~v--- 212 (451)
T PF04179_consen 137 PSWVSESEHAQIEARIPGFVESLKALGLDLESLRSQLGKPLRPLWITPESI-WHDEWESPEDEDFYPIILCSASRRV--- 212 (451)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCeeeEEECCCcc-cCccccccCCCCEeEEEEEcCCCCC---
Confidence 7 9999999999999999999999999999999999999999999998876 4556666677999999999999996
Q ss_pred ccccccCCcceecCCCCCCcccccCCCChhhhhhchhhhhccCCcchhHHHHHHHHhhhhhhhhccCCccceeecccccC
Q 012407 252 QNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVYRAQRGQIAPQVILKSSKLS 331 (464)
Q Consensus 252 ~~~~~~~~~~~YIQGAgDD~E~Wa~GLTP~lFW~h~~~Ll~~~~~~l~~lV~~LV~~~~~~~a~~~~~~~~~~v~~~~~~ 331 (464)
++++++++||.||||||||||+||+||||++||+|+++||++++++|+++|++||++++...+..+.. ++.
T Consensus 213 ~~~~~~~~g~~YIQGAgDD~E~Wa~GLTP~lFW~~~~~Ll~~~e~~L~~lI~~LV~~~~~~~~~~~~~--~i~------- 283 (451)
T PF04179_consen 213 QGGEDSEGGFTYIQGAGDDHESWARGLTPQLFWANKDELLSASEDDLPELIAELVEEERSSSASSGST--QID------- 283 (451)
T ss_pred CCCCccccCcccccCCCCChhhccCCCChHHHHhCHHHHhcCCHHHHHHHHHHHHHHhhhcccccccc--ccc-------
Confidence 45667889999999999999999999999999999999999999999999999999875432211110 010
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCcccceeeeCCcceEEccccc---------ccccCCccEEEecCCCccc-ccc
Q 012407 332 GNSSDLSHVEPPLSSDISDLNIDLKASDESCTISWLGSTNLAVGTSQH---------AAEERNVDCILNCDQESIT-VCL 401 (464)
Q Consensus 332 ~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~ig~t~l~ig~~~~---------~~~~~~~d~ii~c~~~~~~-~~~ 401 (464)
+ .......++++|+||.... ......||+||+|++.+.. .++
T Consensus 284 ----------~------------------~~~~~~~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~ 335 (451)
T PF04179_consen 284 ----------P------------------SFNKIDPGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESW 335 (451)
T ss_pred ----------c------------------cccccccCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCccccccc
Confidence 0 0111223567777777643 2356679999999986654 456
Q ss_pred CCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcC--CCcEEEEcCCCCcchhhheecccC
Q 012407 402 SNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISK--GKTLLICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 402 ~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~--~~~ILV~C~sGkDlSVGv~LalL~ 463 (464)
..++.+||++|+++|+||++||++||+|++|+..+|++ +++|||||+||||+||||+||||.
T Consensus 336 ~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc 399 (451)
T PF04179_consen 336 PKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILC 399 (451)
T ss_pred CCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHH
Confidence 77889999999999999999999999999999999998 889999999999999999999985
No 2
>KOG2634 consensus Initiator tRNA phosphoribosyl-transferase [RNA processing and modification]
Probab=100.00 E-value=1.4e-124 Score=937.22 Aligned_cols=417 Identities=61% Similarity=1.046 Sum_probs=356.5
Q ss_pred ccccchHHHHHHHhhhhcCChhHhhhhhHHhHHHHHHHHHhcCCCCccccccccccccc--CCCceeeeecCCCCCcccc
Q 012407 3 NEANISIYRAARTIKRRQNTLYNALRSIYDDSIFVGEISQLWPQLPLLANLRCGLWYSS--KFHSTCYFKSTDGHTNNWS 80 (464)
Q Consensus 3 ~~~~~Si~~i~r~lkr~~~sl~NRL~SI~~D~~FV~~v~~~~~~lPlvaNeRCG~WY~~--~~~~s~YFKSTDGH~~~W~ 80 (464)
|.+..|++++.|.|||++.|+|||||||++|++||++|...||.||||||||||+||+. +|++||||||||||||||+
T Consensus 10 Mde~dsl~~~~~~I~~~~~s~~NrL~SI~~D~kFvd~vi~~~P~~plv~NeRCGlWY~Np~~f~~t~YFKSTDGHtnqws 89 (476)
T KOG2634|consen 10 MDERDSLYRAARNIKRRDNSLYNRLRSIYQDSKFVDEVILLWPKLPLVANERCGLWYSNPEKFDATCYFKSTDGHTNQWS 89 (476)
T ss_pred hhhhhhHHHHHHHHHhhhccHHHHHHHHHhhhhhHHhHhhccCCCCcccccccccceechhhCCceEEEecCCCCcccce
Confidence 34578999999999999999999999999999999999999999999999999999994 9999999999999999999
Q ss_pred ccccccchhHHHHhhccCceEEEcCCCCCCCCCCCcccccchHHHHHHHHhhhhhhhhcCCCcccccCCCCccccccccc
Q 012407 81 FNTSRLNLHVALLAGQKGGCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRSVYKYRKKMCNGGVVLAKGNASDEHEKSTSQ 160 (464)
Q Consensus 81 FS~rRLNLhll~~i~~~gG~iIVDSTRrGKr~PDAlSKTIPIWcaVlNr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (464)
||+||||||||.+|+++|||||||||||||||||||||||||||||+||.+|.+.++++
T Consensus 90 FstrRLNlHLl~~i~~~~G~IIvDSTRrGKr~PDalSKTiPiW~avlN~~if~~~~~~~--------------------- 148 (476)
T KOG2634|consen 90 FSTRRLNLHLLLLIGEKGGCIIVDSTRRGKRFPDALSKTIPIWSAVLNRSIFNHWNRLC--------------------- 148 (476)
T ss_pred echhhhhhhhhhhhccCCcEEEEecccccccCchhhhccchhHHHHHHHHHHHhhcccc---------------------
Confidence 99999999999999999999999999999999999999999999999999999874332
Q ss_pred cCCCCCCCccCCCCCCccHHHHHHhhhHHHHHHHHHcCCChHHHHhhcCCCeeeEeeecCCccC-CCCCCCCCCCCeeEE
Q 012407 161 FTADWDCSLHLPLWVSDTEKAAIDDRVEEWIKELDASGADIASLASCLKKPLRPLWISQKTVIW-LNEVPDHDSWDFTPI 239 (464)
Q Consensus 161 ~~~~w~~~l~~P~~Vs~sE~~qI~~~i~~~v~~l~~~~~Dl~~l~~~L~KPLRP~Wi~~~~~~~-~~~~~~~~~~df~pi 239 (464)
.+.|++.+++|.|||.+|++.|++|||+||++|.++|+|+++|+++|.|||||+||+|++.+| ++|+++.+.|+|+||
T Consensus 149 -~~~~~~~~lpP~~vp~tE~~sI~~rlde~v~~L~~sgiD~~~La~~l~KplRPlWV~p~s~l~s~~ev~Ey~sw~ftp~ 227 (476)
T KOG2634|consen 149 -LDKWDCSLLPPLWVPNTERASIEARLDEWVRELDESGIDIASLASCLRKPLRPLWVSPKSVLWSLNEVPEYDSWDFTPL 227 (476)
T ss_pred -cchhhhccCCcccCCchhHHHHHHHhHHHHHHHHHcCCCHHHHHHHHhccCcceeecccceeecccCccccccccceeE
Confidence 237899888889999999999999999999999999999999999999999999999999997 889999999999999
Q ss_pred EEeecCccccccccccccCCcceecCCCCCCcccccCCCChhhhhhchhhhhccCCcchhHHHHHHHHhhhhhhhhccCC
Q 012407 240 ILVSASSQSGIIQNRTTSEFSWNYIPGAGDDEESWARGLTPNLFWKNAYDLINSGPDICNQKVADIVEKDRVYRAQRGQI 319 (464)
Q Consensus 240 il~SaS~~v~~~~~~~~~~~~~~YIQGAgDD~E~Wa~GLTP~lFW~h~~~Ll~~~~~~l~~lV~~LV~~~~~~~a~~~~~ 319 (464)
||||||.+ .|+++++|+||.||||||||||+|++||+|.+||+|++.|+..++++|+++|+.+|++.|.|++.+++.
T Consensus 228 iLvtaSaq---~Qng~s~e~gf~YvqGAaDDeE~Ws~GL~pnvFW~hve~l~~~~~dql~qki~l~~~~~Rn~~~~~~~s 304 (476)
T KOG2634|consen 228 ILVTASAQ---LQNGTSSEFGFNYVQGAADDEESWSRGLSPNVFWTHVEDLIHSGPDQLNQKIALIVENDRNYRAHRGQS 304 (476)
T ss_pred EEEEeehh---hhcCccccccceeccCcCCcHHHHhcCCChhhHHHHHHHHhhCCHHHHHHHHHHHHHhccccccccCCc
Confidence 99999999 488999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccceeecccccCCCCCCCCCCCCCCCCCccccccccccCCcccceeeeCCcceEEcccccccccCCccEEEecCCCcccc
Q 012407 320 APQVILKSSKLSGNSSDLSHVEPPLSSDISDLNIDLKASDESCTISWLGSTNLAVGTSQHAAEERNVDCILNCDQESITV 399 (464)
Q Consensus 320 ~~~~~v~~~~~~~~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~ig~t~l~ig~~~~~~~~~~~d~ii~c~~~~~~~ 399 (464)
.+++.++--+++++ -++.+-.+...++. -++...++.-.+||..+|+++|....++.....||+.+|++.....
T Consensus 305 l~~v~~~~~k~t~~---i~~gkv~~~l~~~~---ni~~~~~~~y~fvl~~sN~~~~a~~~~~~E~si~~~~~~sg~kks~ 378 (476)
T KOG2634|consen 305 LPQVVVKCSKSTGG---INHGKVDEILCLSA---NIPKVDEERYVFVLSSSNLAVGASQVACKETSIDCILNCSGNKKSV 378 (476)
T ss_pred cchhhhcccccCCC---eeecccccccCCcc---cccccchhheEEEEEeccceeecccccchhhhhheeecCCCCcccC
Confidence 88887654433220 00111111111111 1233333455689999999999988777777789999998766554
Q ss_pred ccCCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcEEEEcCCC
Q 012407 400 CLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSG 450 (464)
Q Consensus 400 ~~~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~ILV~C~sG 450 (464)
+.....-.++++...++..+++-+.++|.++.|....++.++.++|||..+
T Consensus 379 pv~r~~fp~il~e~~Slf~~f~e~~~~~~~~~~~~~~mssg~~l~ilC~~y 429 (476)
T KOG2634|consen 379 PVSRLEFPLILPEKGSLFDRFSESRNLPPAVNFAKLKMSSGKKLLILCQDY 429 (476)
T ss_pred cchhhhchhhhhhhcccCCchhhhcCCCeeecccccchhcCceeeeeehhc
Confidence 333333335666666777777777777777777777777777777777665
No 3
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.84 E-value=3.4e-05 Score=67.99 Aligned_cols=91 Identities=19% Similarity=0.338 Sum_probs=68.3
Q ss_pred cceEEccccccc-----ccCCccEEEecCCCccccccCCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcEE
Q 012407 370 TNLAVGTSQHAA-----EERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLL 444 (464)
Q Consensus 370 t~l~ig~~~~~~-----~~~~~d~ii~c~~~~~~~~~~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~IL 444 (464)
.+|++|+...+. ....+..||++...... .......|+++|+... ....+...++.+++|+......+++||
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-~~~~~~~~~~ipi~D~--~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKLGITHVINVTNEVPN-LNKKGFTYLGVPILDN--TETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC-CCCCCCEEEEEECCCC--CCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 467888764332 22467899999764332 1234467899998872 234567889999999999988899999
Q ss_pred EEcCCCCcchhhheecccC
Q 012407 445 ICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 445 V~C~sGkDlSVGv~LalL~ 463 (464)
|+|..|...|..++.|.||
T Consensus 83 VHC~~G~~RS~~v~~~yl~ 101 (138)
T smart00195 83 VHCQAGVSRSATLIIAYLM 101 (138)
T ss_pred EECCCCCchHHHHHHHHHH
Confidence 9999999999999888765
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=97.83 E-value=3.3e-05 Score=67.42 Aligned_cols=93 Identities=18% Similarity=0.297 Sum_probs=69.1
Q ss_pred CcceEEccccccc-----ccCCccEEEecCCCccc-cccCCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCc
Q 012407 369 STNLAVGTSQHAA-----EERNVDCILNCDQESIT-VCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKT 442 (464)
Q Consensus 369 ~t~l~ig~~~~~~-----~~~~~d~ii~c~~~~~~-~~~~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~ 442 (464)
..+|++|...... ...++..||++...... ........++|+++.... ...+...++.+++|+......+++
T Consensus 6 ~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~i~~~~~~~~~ 83 (139)
T cd00127 6 TPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLP--SQDISKYFDEAVDFIDDAREKGGK 83 (139)
T ss_pred cCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCC--CCChHHHHHHHHHHHHHHHhcCCc
Confidence 4678888764321 12457899998764432 112344578999998765 345677899999999988888899
Q ss_pred EEEEcCCCCcchhhheecccC
Q 012407 443 LLICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 443 ILV~C~sGkDlSVGv~LalL~ 463 (464)
|+|+|..|...|+.++++.|+
T Consensus 84 vlVHC~~G~~Rs~~~~~~~l~ 104 (139)
T cd00127 84 VLVHCLAGVSRSATLVIAYLM 104 (139)
T ss_pred EEEECCCCCchhHHHHHHHHH
Confidence 999999999999999887764
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=97.74 E-value=2.5e-05 Score=68.14 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=62.8
Q ss_pred CCccEEEecCCCccc--cccCCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcEEEEcCCCCcchhhheecc
Q 012407 384 RNVDCILNCDQESIT--VCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEK 461 (464)
Q Consensus 384 ~~~d~ii~c~~~~~~--~~~~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~ILV~C~sGkDlSVGv~Lal 461 (464)
..++.||++...... ........++++++.. .....+...++++++|+.....++.+|||+|..|...|..+++|.
T Consensus 17 ~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D--~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 94 (133)
T PF00782_consen 17 LGITHVINLQEECPNPYFYKPEGIEYLRIPIDD--DPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAY 94 (133)
T ss_dssp TTEEEEEECSSSSSTSHHHTTTTSEEEEEEEES--STTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHH
T ss_pred CCCCEEEEccCCCcCchhcccCCCEEEEEEecC--CCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHH
Confidence 357899998864432 1123456788888776 566778899999999999998889999999999999999999987
Q ss_pred cC
Q 012407 462 LH 463 (464)
Q Consensus 462 L~ 463 (464)
||
T Consensus 95 Lm 96 (133)
T PF00782_consen 95 LM 96 (133)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 6
>PRK12361 hypothetical protein; Provisional
Probab=96.52 E-value=0.0053 Score=66.87 Aligned_cols=92 Identities=18% Similarity=0.348 Sum_probs=67.1
Q ss_pred CcceEEccccccc-----ccCCccEEEecCCCcccccc---CCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCC
Q 012407 369 STNLAVGTSQHAA-----EERNVDCILNCDQESITVCL---SNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKG 440 (464)
Q Consensus 369 ~t~l~ig~~~~~~-----~~~~~d~ii~c~~~~~~~~~---~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~ 440 (464)
..+|++|...... ....+..||+|..+....++ .....|+++|+...-.- ....|+++++|+.+...++
T Consensus 99 ~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p---~~~~l~~a~~~i~~~~~~~ 175 (547)
T PRK12361 99 DENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVP---TLAQLNQAINWIHRQVRAN 175 (547)
T ss_pred cCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCC---cHHHHHHHHHHHHHHHHCC
Confidence 4578888764322 12457899998743221111 23357999998764332 2367999999999999888
Q ss_pred CcEEEEcCCCCcchhhheecccC
Q 012407 441 KTLLICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 441 ~~ILV~C~sGkDlSVGv~LalL~ 463 (464)
++|||||.-|.-.|+.|+.|.||
T Consensus 176 ~~VlVHC~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 176 KSVVVHCALGRGRSVLVLAAYLL 198 (547)
T ss_pred CeEEEECCCCCCcHHHHHHHHHH
Confidence 99999999999999999999886
No 7
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.07 E-value=0.011 Score=59.56 Aligned_cols=93 Identities=19% Similarity=0.354 Sum_probs=68.3
Q ss_pred CcceEEccccccc-----ccCCccEEEecCCCcccc--ccCCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCC
Q 012407 369 STNLAVGTSQHAA-----EERNVDCILNCDQESITV--CLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGK 441 (464)
Q Consensus 369 ~t~l~ig~~~~~~-----~~~~~d~ii~c~~~~~~~--~~~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~ 441 (464)
.++|++|+-..+. .....+.|+++....... .......|+++++.- ..+-+|...||+++.|+.....++.
T Consensus 79 ~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D--~~~~~i~~~~~~~~~fI~~a~~~~~ 156 (285)
T KOG1716|consen 79 LPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVED--NPSTDILQHFPEAISFIEKAREKGG 156 (285)
T ss_pred cCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccC--CccccHHHHHHHHHHHHHHHHhCCC
Confidence 4667787764221 222457899988644332 112234566666544 5677899999999999999999999
Q ss_pred cEEEEcCCCCcchhhheecccC
Q 012407 442 TLLICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 442 ~ILV~C~sGkDlSVGv~LalL~ 463 (464)
+|||+|.-|.=.|+.+++|-||
T Consensus 157 ~vlVHC~~GvSRSat~viAYlM 178 (285)
T KOG1716|consen 157 KVLVHCQAGVSRSATLVIAYLM 178 (285)
T ss_pred eEEEEcCCccchhHHHHHHHHH
Confidence 9999999999999999999886
No 8
>KOG2634 consensus Initiator tRNA phosphoribosyl-transferase [RNA processing and modification]
Probab=94.53 E-value=0.028 Score=58.80 Aligned_cols=80 Identities=6% Similarity=-0.113 Sum_probs=57.8
Q ss_pred CCccEEEecCCCcccccc-C-CCcceEEecCCCC-chhHHHHHHhhhHHHHHHHHhhc----CCCcEEEEcCCCCcchhh
Q 012407 384 RNVDCILNCDQESITVCL-S-NAEAYFHLPMVNS-KLDRFSLLRNLPSAVNFVKLNIS----KGKTLLICCHSGKDFYLP 456 (464)
Q Consensus 384 ~~~d~ii~c~~~~~~~~~-~-~~~~~l~l~l~~s-K~~s~~LR~~LP~i~~F~~~~L~----~~~~ILV~C~sGkDlSVG 456 (464)
+.|..||+.+........ . ++..+-.+++++| ||+..-+|..+|.+..-...... +.+..+|||.+|+|+|.|
T Consensus 340 ~~y~fvl~~sN~~~~a~~~~~~E~si~~~~~~sg~kks~pv~r~~fp~il~e~~Slf~~f~e~~~~~~~~~~~~~~mssg 419 (476)
T KOG2634|consen 340 ERYVFVLSSSNLAVGASQVACKETSIDCILNCSGNKKSVPVSRLEFPLILPEKGSLFDRFSESRNLPPAVNFAKLKMSSG 419 (476)
T ss_pred hheEEEEEeccceeecccccchhhhhheeecCCCCcccCcchhhhchhhhhhhcccCCchhhhcCCCeeecccccchhcC
Confidence 456677777654432211 1 2233346778885 99999999999999987775443 245788999999999999
Q ss_pred heecccC
Q 012407 457 SYLEKLH 463 (464)
Q Consensus 457 v~LalL~ 463 (464)
++|.+|-
T Consensus 420 ~~l~ilC 426 (476)
T KOG2634|consen 420 KKLLILC 426 (476)
T ss_pred ceeeeee
Confidence 9999874
No 9
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.62 E-value=0.11 Score=52.99 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=66.2
Q ss_pred CcceEEcccccc---cccCC--ccEEEecCCCccccccCC--CcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCC
Q 012407 369 STNLAVGTSQHA---AEERN--VDCILNCDQESITVCLSN--AEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGK 441 (464)
Q Consensus 369 ~t~l~ig~~~~~---~~~~~--~d~ii~c~~~~~~~~~~~--~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~ 441 (464)
.++||+|..... +...+ ..-|||.++.-.. .... +-.|.+++| +--.|.+|-+-+|+++.||....+++-
T Consensus 176 lp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn-~fe~~g~f~Ykqipi--sDh~Sqnls~ffpEAIsfIdeArsk~c 252 (343)
T KOG1717|consen 176 LPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPN-NFENNGEFIYKQIPI--SDHASQNLSQFFPEAISFIDEARSKNC 252 (343)
T ss_pred ccchhcccccccccHHHHHhcCceEEEecCCCCcc-hhhcCCceeEEeeec--cchhhhhhhhhhHHHHHHHHHhhccCC
Confidence 456788765432 12222 3578887653321 1122 234555555 555899999999999999999999888
Q ss_pred cEEEEcCCCCcchhhheecccC
Q 012407 442 TLLICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 442 ~ILV~C~sGkDlSVGv~LalL~ 463 (464)
-+||+|=-|--.||-|.+|-||
T Consensus 253 gvLVHClaGISRSvTvtvaYLM 274 (343)
T KOG1717|consen 253 GVLVHCLAGISRSVTVTVAYLM 274 (343)
T ss_pred cEEEeeeccccchhHHHHHHHH
Confidence 8999999999999999999887
No 10
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=87.17 E-value=0.46 Score=44.71 Aligned_cols=56 Identities=25% Similarity=0.416 Sum_probs=43.3
Q ss_pred cceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcEEEEcCCCCcchhhheecccC
Q 012407 405 EAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 405 ~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~ILV~C~sGkDlSVGv~LalL~ 463 (464)
..++++++.-+ ...++ ..|.++++|+...++++++|+|+|.=|.=.|..|+-|.||
T Consensus 73 ~~~~~~~~~D~--~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm 128 (180)
T COG2453 73 IQVLHLPILDG--TVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLM 128 (180)
T ss_pred ceeeeeeecCC--CCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHH
Confidence 44566666552 11222 7788999999999999999999999999999999887665
No 11
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=84.25 E-value=3 Score=39.06 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=57.0
Q ss_pred cceeeeCCcceEEcccccc--------cccCCccEEEecCCCcccccc--CCCcceEEecCCCCchhHHH-HHHhhhHHH
Q 012407 362 CTISWLGSTNLAVGTSQHA--------AEERNVDCILNCDQESITVCL--SNAEAYFHLPMVNSKLDRFS-LLRNLPSAV 430 (464)
Q Consensus 362 ~~~~~ig~t~l~ig~~~~~--------~~~~~~d~ii~c~~~~~~~~~--~~~~~~l~l~l~~sK~~s~~-LR~~LP~i~ 430 (464)
..+.|+++.-|++..-... -....+..|+++......... .....++++|++.+...+.. +...+-.+.
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~ 88 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLD 88 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 4556665555555433211 022245777776543221111 12356788898765443333 333333333
Q ss_pred HHHHHhhcCCCcEEEEcCCCCcchhhheecccC
Q 012407 431 NFVKLNISKGKTLLICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 431 ~F~~~~L~~~~~ILV~C~sGkDlSVGv~LalL~ 463 (464)
++....+.++.+|+|+|..|.-.|.-++.+.|+
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~ 121 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGLGRAPILVALALV 121 (166)
T ss_pred HHHHhhccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344434456889999999999999887776654
No 12
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=81.45 E-value=1.4 Score=41.26 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCcceEEecCCCCchhHHHH-HHhhhHHHHHHHHhhcCCCcEEEEcCCCCcchhhhe
Q 012407 403 NAEAYFHLPMVNSKLDRFSL-LRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSY 458 (464)
Q Consensus 403 ~~~~~l~l~l~~sK~~s~~L-R~~LP~i~~F~~~~L~~~~~ILV~C~sGkDlSVGv~ 458 (464)
....++|+++.++|.....+ .+.+-++++.+... ...+|||+|.+|+|..-.|+
T Consensus 55 ~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~--~n~PvLiHC~~G~~rTG~vv 109 (164)
T PF03162_consen 55 NGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP--RNYPVLIHCNHGKDRTGLVV 109 (164)
T ss_dssp TT-EEEE-------GGG----HHHHHHHHHHHH-G--GG-SEEEE-SSSSSHHHHHH
T ss_pred cCceEEEeccccccCccccCCHHHHHHHHHHHhCC--CCCCEEEEeCCCCcchhhHH
Confidence 44567899999888732222 22233333333222 24699999999999875543
No 13
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=77.48 E-value=6.5 Score=38.04 Aligned_cols=92 Identities=20% Similarity=0.343 Sum_probs=63.1
Q ss_pred CcceEEcccccc-----cccCCccEEEecCCCccccccCCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcE
Q 012407 369 STNLAVGTSQHA-----AEERNVDCILNCDQESITVCLSNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTL 443 (464)
Q Consensus 369 ~t~l~ig~~~~~-----~~~~~~d~ii~c~~~~~~~~~~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~I 443 (464)
+..|+++.-.++ ....+..||||.+.+.....+ ....|+.+++...--. .|-+.|..+-+-|..--.++.+.
T Consensus 21 t~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l-~~~qy~kv~~~D~p~~--~l~~hfD~vAD~I~~v~~~gG~T 97 (198)
T KOG1718|consen 21 TPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSL-PDIQYMKVPLEDTPQA--RLYDHFDPVADKIHSVIMRGGKT 97 (198)
T ss_pred CcceeEeccccccCHHHHHhcCceEEEEcccCCCCccC-CCceeEEEEcccCCcc--hhhhhhhHHHHHHHHHHhcCCcE
Confidence 456777632111 233467899998865443222 3356888988764333 36677777777777655567789
Q ss_pred EEEcCCCCcchhhheecccC
Q 012407 444 LICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 444 LV~C~sGkDlSVGv~LalL~ 463 (464)
||+|--|.-.|..+.||-||
T Consensus 98 LvHC~AGVSRSAsLClAYLm 117 (198)
T KOG1718|consen 98 LVHCVAGVSRSASLCLAYLM 117 (198)
T ss_pred EEEEccccchhHHHHHHHHH
Confidence 99999999999999999886
No 14
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=75.30 E-value=3.5 Score=37.05 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=26.8
Q ss_pred CcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcEEEEcCCCCcchh
Q 012407 404 AEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYL 455 (464)
Q Consensus 404 ~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~ILV~C~sGkDlSV 455 (464)
.-.|+|+|+...+....+ +..|.+..-...++||++|.+|| .+.
T Consensus 57 gl~y~~iPv~~~~~~~~~-------v~~f~~~~~~~~~pvL~HC~sG~-Rt~ 100 (135)
T TIGR01244 57 GVTYHHQPVTAGDITPDD-------VETFRAAIGAAEGPVLAYCRSGT-RSS 100 (135)
T ss_pred CCeEEEeecCCCCCCHHH-------HHHHHHHHHhCCCCEEEEcCCCh-HHH
Confidence 457889998876542222 22233221123579999999999 543
No 15
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=72.60 E-value=4 Score=38.98 Aligned_cols=41 Identities=32% Similarity=0.455 Sum_probs=37.3
Q ss_pred HHhhhHHHHHHHHhhcCCCcEEEEcCCCCcchhhheecccC
Q 012407 423 LRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 423 R~~LP~i~~F~~~~L~~~~~ILV~C~sGkDlSVGv~LalL~ 463 (464)
+..|-++++||.++.+.|+.+-|+|.-|+-.|.-|+.+-||
T Consensus 92 ~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLm 132 (183)
T KOG1719|consen 92 LENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLM 132 (183)
T ss_pred HHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhh
Confidence 45677889999999999999999999999999999998876
No 16
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=69.08 E-value=5.8 Score=39.91 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=42.3
Q ss_pred CcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcEEEEcCCCCcchhhheecccC
Q 012407 404 AEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKLH 463 (464)
Q Consensus 404 ~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~ILV~C~sGkDlSVGv~LalL~ 463 (464)
...+++++++-+-.-+.. .+.+.++|+...+.++.+|+|+|-.|.-.|.-++.+.|+
T Consensus 137 GI~~~~lpipDg~aPs~~---~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI 193 (241)
T PTZ00393 137 GINVHELIFPDGDAPTVD---IVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLI 193 (241)
T ss_pred CCeEEEeecCCCCCCCHH---HHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356789999876554433 456666777777778889999999999999777666653
No 17
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=63.25 E-value=6.4 Score=31.84 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCcchhhheeccc
Q 012407 440 GKTLLICCHSGKDFYLPSYLEKL 462 (464)
Q Consensus 440 ~~~ILV~C~sGkDlSVGv~LalL 462 (464)
+.+|+|+|..|...|..++.+.+
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~ 61 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTFVALDI 61 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHH
Confidence 56999999999999987765543
No 18
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=63.25 E-value=6.4 Score=31.84 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCcchhhheeccc
Q 012407 440 GKTLLICCHSGKDFYLPSYLEKL 462 (464)
Q Consensus 440 ~~~ILV~C~sGkDlSVGv~LalL 462 (464)
+.+|+|+|..|...|..++.+.+
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~ 61 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTFVALDI 61 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHH
Confidence 56999999999999987765543
No 19
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=57.65 E-value=7.1 Score=35.78 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=10.7
Q ss_pred CCcEEEEcCCCCcch
Q 012407 440 GKTLLICCHSGKDFY 454 (464)
Q Consensus 440 ~~~ILV~C~sGkDlS 454 (464)
..++||||..|||..
T Consensus 124 ~~p~l~HC~aGKDRT 138 (164)
T PF13350_consen 124 PGPVLFHCTAGKDRT 138 (164)
T ss_dssp T--EEEE-SSSSSHH
T ss_pred CCcEEEECCCCCccH
Confidence 369999999999975
No 20
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=56.98 E-value=13 Score=35.47 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=29.4
Q ss_pred cceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcEEEEcCCCCcchhhheeccc
Q 012407 405 EAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGKDFYLPSYLEKL 462 (464)
Q Consensus 405 ~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~ILV~C~sGkDlSVGv~LalL 462 (464)
-.++|+||+-...=. +.... ++++.+...|..+++|+|+|.-|.-.+-=||-.+|
T Consensus 101 i~~~h~PI~D~~aPd--~~~~~-~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLL 155 (168)
T PF05706_consen 101 IAWHHLPIPDGSAPD--FAAAW-QILEELAARLENGRKVLVHCRGGLGRTGLVAACLL 155 (168)
T ss_dssp -EEEE----TTS-----HHHHH-HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHH
T ss_pred CEEEecCccCCCCCC--HHHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899998865432 22222 35566677788899999999999887755554443
No 21
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=54.69 E-value=13 Score=32.72 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=30.6
Q ss_pred cCCccEEEecCCCccc---ccc--------CCCcceEEecCCCCchhHHHHHHhhhHHHHHHHHhhcCCCcEEEEcCCCC
Q 012407 383 ERNVDCILNCDQESIT---VCL--------SNAEAYFHLPMVNSKLDRFSLLRNLPSAVNFVKLNISKGKTLLICCHSGK 451 (464)
Q Consensus 383 ~~~~d~ii~c~~~~~~---~~~--------~~~~~~l~l~l~~sK~~s~~LR~~LP~i~~F~~~~L~~~~~ILV~C~sGk 451 (464)
..+|..|||.-+.... +.. ...-.|+|+|+..+....-+ +..|....-...+|||+.|.||.
T Consensus 25 ~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~-------v~~f~~~l~~~~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 25 AQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEED-------VEAFADALESLPKPVLAHCRSGT 97 (110)
T ss_dssp HCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHH-------HHHHHHHHHTTTTSEEEE-SCSH
T ss_pred HCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHH-------HHHHHHHHHhCCCCEEEECCCCh
Confidence 3468888886532211 111 12346899999987543322 23333322223569999999998
Q ss_pred cchhhhee
Q 012407 452 DFYLPSYL 459 (464)
Q Consensus 452 DlSVGv~L 459 (464)
--++=.+|
T Consensus 98 Ra~~l~~l 105 (110)
T PF04273_consen 98 RASALWAL 105 (110)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 65543333
No 22
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=38.09 E-value=29 Score=31.90 Aligned_cols=27 Identities=22% Similarity=0.656 Sum_probs=25.5
Q ss_pred CCCCccHHHHHHhhhHHHHHHHHHcCC
Q 012407 173 LWVSDTEKAAIDDRVEEWIKELDASGA 199 (464)
Q Consensus 173 ~~Vs~sE~~qI~~~i~~~v~~l~~~~~ 199 (464)
.|+|.+|-+.+.+-+.+||+.++++|.
T Consensus 100 ~wiSa~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 100 LWISAAEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999999999999985
No 23
>cd08047 TAF7 TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 7 (TAF7) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving
Probab=33.51 E-value=32 Score=32.31 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=30.5
Q ss_pred CCCCCCcccccCCCChhhhhhchhhh---hccCC---cchhHHHHHHHHhh
Q 012407 265 PGAGDDEESWARGLTPNLFWKNAYDL---INSGP---DICNQKVADIVEKD 309 (464)
Q Consensus 265 QGAgDD~E~Wa~GLTP~lFW~h~~~L---l~~~~---~~l~~lV~~LV~~~ 309 (464)
....+..-.|-+||||++-|..+... ..... .+.+..|.+|+..+
T Consensus 101 ~~~~~~~~~~~hGLTPP~~~vrkRrfrk~~~~~~~~i~~vEkev~~ll~~d 151 (162)
T cd08047 101 KKDKPKKFEYPHGLTPPMKNVRKRRFRKTPSKKIAEIEEVEKEVKRLLKED 151 (162)
T ss_pred ccccccccccCCCCCcCchhhhhcccccccccccchHHHHHHHHHHHHHhh
Confidence 34467777899999999999877543 22233 45666777777544
No 24
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=33.14 E-value=21 Score=20.20 Aligned_cols=6 Identities=67% Similarity=1.055 Sum_probs=4.7
Q ss_pred eecCCC
Q 012407 69 FKSTDG 74 (464)
Q Consensus 69 FKSTDG 74 (464)
|+||||
T Consensus 1 ~~S~D~ 6 (12)
T PF02012_consen 1 YYSTDG 6 (12)
T ss_dssp EEESST
T ss_pred CEeCCC
Confidence 678887
No 25
>PF09550 DUF2376: Conserved hypothetical phage protein (DUF2376); InterPro: IPR019056 Gene transfer agents belong to a group of unusual genetic exchange elements []. GTAs are unusual in the sense they have the structure of a small tailed phage, which do not possess typical phage traits such as host cell lysis and infectious transmission of the GTA genes. In the Rhodobacter capsulatus GTA the GTA particles contain random 4.5 kb DNA fragments of the R.capsulatus genome. These DNA fragments can be transmitted to other cells where allelic conversion may occur via homologous recombination. The genes coding for the GTA particles are of two distinct types: the first is a cluster of genes reminiscent of a cryptyic prophage, where a number of the genes have similarity to known phage structural genes; the second type consists of two genes coding for a cellular two-component signal transduction system, which regulates the transcription of the GTA structural gene cluster in a growth phase dependent manner []. This entry is represented by ORFg10.1 (RCAP_rcc01693) of the Gene Transfer Agent (GTA) of Rhodobacter capsulatus [see Fig.1, in ]. The function is not known.
Probab=32.60 E-value=20 Score=26.98 Aligned_cols=10 Identities=50% Similarity=1.288 Sum_probs=9.1
Q ss_pred CCChhhhhhc
Q 012407 277 GLTPNLFWKN 286 (464)
Q Consensus 277 GLTP~lFW~h 286 (464)
||+|+.||+-
T Consensus 2 gl~P~~FW~l 11 (43)
T PF09550_consen 2 GLSPEEFWRL 11 (43)
T ss_pred CCCHHHHHhc
Confidence 8999999985
No 26
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=28.34 E-value=56 Score=32.53 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=17.0
Q ss_pred HHHHHHhhcCC-CcEEEEcCCCCcc
Q 012407 430 VNFVKLNISKG-KTLLICCHSGKDF 453 (464)
Q Consensus 430 ~~F~~~~L~~~-~~ILV~C~sGkDl 453 (464)
..++..-+.+. .+||+||..|||.
T Consensus 125 ~~~~~l~~~~e~~PvL~HC~~GkdR 149 (249)
T COG2365 125 VELLQLLADAENGPVLIHCTAGKDR 149 (249)
T ss_pred HHHHHHHhhcccCCEEEecCCCCcc
Confidence 33444444444 8999999999996
No 27
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=28.10 E-value=53 Score=36.86 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=34.3
Q ss_pred eecCCC---CCcccccccc-----ccchhHHHHhhccC-ceEEEcCCCCC
Q 012407 69 FKSTDG---HTNNWSFNTS-----RLNLHVALLAGQKG-GCIIVDSTRKG 109 (464)
Q Consensus 69 FKSTDG---H~~~W~FS~r-----RLNLhll~~i~~~g-G~iIVDSTRrG 109 (464)
-|+-+| |||.|.|--+ .++++.+.-+++.| =|+|.||||.+
T Consensus 154 i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~ 203 (555)
T COG0595 154 IKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAE 203 (555)
T ss_pred EECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccC
Confidence 677789 9999999864 46788888888886 57999999987
No 28
>PF04658 TAFII55_N: TAFII55 protein conserved region; InterPro: IPR006751 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. TAFII55 binds to TAFII250 and inhibits its acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminal of the protein [].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005669 transcription factor TFIID complex
Probab=26.45 E-value=59 Score=30.79 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=28.0
Q ss_pred CCCCcccccCCCChhhhhhchhhhhccC-----CcchhHHHHHHHHhh
Q 012407 267 AGDDEESWARGLTPNLFWKNAYDLINSG-----PDICNQKVADIVEKD 309 (464)
Q Consensus 267 AgDD~E~Wa~GLTP~lFW~h~~~Ll~~~-----~~~l~~lV~~LV~~~ 309 (464)
.-+..-.|-+||||++-|-.+...-... -.+++.-|.+|++.+
T Consensus 110 ~~~~~~~~~hGiTPP~knvrkRRFRk~~~~~~~i~~vE~ev~~LL~~D 157 (162)
T PF04658_consen 110 KEDKKFEWPHGITPPMKNVRKRRFRKRKKKYREIPEVEKEVKRLLRED 157 (162)
T ss_pred ccccccCCCCCCChhhhhHHHhhhccCccccccHHHHHHHHHHHHhcc
Confidence 3455556889999999998665443322 234666677777644
No 29
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=22.10 E-value=33 Score=31.32 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=16.2
Q ss_pred ccccccccccc-----------CCCceeeeec
Q 012407 51 ANLRCGLWYSS-----------KFHSTCYFKS 71 (464)
Q Consensus 51 aNeRCG~WY~~-----------~~~~s~YFKS 71 (464)
+|-||.+|+.+ .|..--||||
T Consensus 49 ~DGR~d~pll~g~~~~~G~Y~l~F~~gdYf~~ 80 (124)
T COG2351 49 ADGRIDAPLLAGETLATGIYELVFHTGDYFKS 80 (124)
T ss_pred CCCcccccccCccccccceEEEEEEcchhhhc
Confidence 46799988885 4566789999
No 30
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=20.31 E-value=91 Score=29.73 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCCcchhhheec
Q 012407 439 KGKTLLICCHSGKDFYLPSYLE 460 (464)
Q Consensus 439 ~~~~ILV~C~sGkDlSVGv~La 460 (464)
.+.+|+|+|..|...|..++.+
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a~ 186 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIAI 186 (231)
T ss_pred CCCCeEEECCCCCCccchHHHH
Confidence 3569999999999988766544
Done!