BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012409
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/464 (67%), Positives = 380/464 (81%), Gaps = 7/464 (1%)
Query: 1 METTLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKA 59
ME TLQ+FRT++AFRNR+FPI GKALQFI+ SKQ + GG+ GTATTNVYR+ FKA
Sbjct: 124 MENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKA 183
Query: 60 EMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELV 119
MK++ S CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE V
Sbjct: 184 GMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQV 243
Query: 120 WEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPN 179
WEE+ DI++GVLS+RITVPS+R AMSK+L PNPELA+ I KC LSNWYGLIP LFPN
Sbjct: 244 WEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPN 303
Query: 180 AKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPN 239
AKY+ GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN
Sbjct: 304 AKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPN 363
Query: 240 IGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMG 299
+GYFEF+P S+ E KPVGLT+VK+GEEYE+++TN AGLYRYRLGDVVKV+G
Sbjct: 364 LGYFEFLPV------SETGEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIG 417
Query: 300 FHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTD 359
F+N+TP+LKFICRRNL+L+INIDKNTE+DLQLSV+ V+DF+S++D+STD
Sbjct: 418 FYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTD 477
Query: 360 PGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQI 419
PGHY IFWE+SGE N++VL++CCNCLDR+F+DAGYVS+RK IG LELRVV KGTF++I
Sbjct: 478 PGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKI 537
Query: 420 LDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 463
+H+LGLG++ QFK PRCV P+N VLQILC N+ SYFSTA+
Sbjct: 538 QEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 181/448 (40%), Positives = 278/448 (62%), Gaps = 11/448 (2%)
Query: 21 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDF 80
+ KGK L F++ +++T GGL A T+ Y+S FK + SP+E I D
Sbjct: 146 LDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADS 205
Query: 81 HQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPS 140
QS+Y +LCG+ R+++ + + FA L+ A R +L W +L DIR G LS +IT PS
Sbjct: 206 FQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGTLSPKITDPS 265
Query: 141 IRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRH 200
+R ++ +LKP+PELADL+ +CS NW G+I ++PN KYL I+TG+M Y+ L +
Sbjct: 266 VRNCVAGVLKPDPELADLVAGECSK-DNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDY 324
Query: 201 YAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCI 260
Y+G LPL Y SSE + G N+NP P ++ ++PN+ YFEF+P ++
Sbjct: 325 YSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDS- 383
Query: 261 EPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTIN 320
P+ V L V+VG+EYE+++T AGLYRYR+GD+++V GFHNS P+ F+ R+N+LL+I+
Sbjct: 384 PPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSID 443
Query: 321 IDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEV-----SGEVND 375
DK E +LQ +VD VV++TS D T PGHYVI+WE+ + +D
Sbjct: 444 SDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELLVKDSANSPSD 503
Query: 376 EVLKECCNCLDRSFVDAGYVSARKV-NAIGPLELRVVLKGTFQQILDHYLGLGAALSQFK 434
E+L +CC ++ S +++ Y R N+IGPLE+RVV GTF++++D+ + GA+++Q+K
Sbjct: 504 ELLGQCCLAMEES-LNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYK 562
Query: 435 TPRCVGPTNKTVLQILCNNIGKSYFSTA 462
PRCV T ++++L + + S+FS A
Sbjct: 563 VPRCVNFT--PIMELLDSRVVSSHFSPA 588
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 330 bits (846), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 181/453 (39%), Positives = 266/453 (58%), Gaps = 25/453 (5%)
Query: 21 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDF 80
+ +GK + F++ ++S T GL A AT++ ++S FK SPDEVI P+
Sbjct: 140 VEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNN 199
Query: 81 HQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPS 140
+SLYCHLLCGL+ R+E+ S FA +V A + WEELC +IR G LS+ +T
Sbjct: 200 TESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWVTDLG 259
Query: 141 IRAAMSKILK-PNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLR 199
+ ++S +L P PELAD I + C+ ++W G++ L+PN KY+ ++TGSM Y+ L
Sbjct: 260 CQNSVSLVLGGPRPELADTIEEICNQ-NSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLN 318
Query: 200 HYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLC 259
+Y DLPL+S YGSSE G N++P PE ++ +PN+ YFEFIP G+
Sbjct: 319 YYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGD------- 371
Query: 260 IEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTI 319
+ V L +VK+G YE +VTN AGLYR R+GD+V V GF+N+ P+ KF+ R N++L+I
Sbjct: 372 -KNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSI 430
Query: 320 NIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEVSG-------- 371
+ DK E+DL +V + DFTS+ D ST PGHYV++ EV
Sbjct: 431 DSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKET 490
Query: 372 ---EVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLG 427
E+++E L CC ++ S +D Y R K +IGPLE+RVV +GTF ++D ++ G
Sbjct: 491 AQFELDEEALSTCCLVMEES-LDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQG 549
Query: 428 AALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 460
A+ Q+KTPRC+ + LQ+L + +FS
Sbjct: 550 ASTGQYKTPRCI--KSGKALQVLETCVVAKFFS 580
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 180/453 (39%), Positives = 259/453 (57%), Gaps = 25/453 (5%)
Query: 21 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDF 80
+ +GK F++ ++S T GL A AT++ ++S FK SPDEVI P+
Sbjct: 140 VEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNN 199
Query: 81 HQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPS 140
+SLYCHLLCGL+ R+E+ S FA V A + WEELC +IR G LS+ +T
Sbjct: 200 TESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRSGHLSNWVTDLG 259
Query: 141 IRAAMSKILK-PNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLR 199
+ ++S +L P PELAD I + C+ ++W G++ L+PN KY+ ++TGS Y+ L
Sbjct: 260 CQNSVSLVLGGPRPELADTIEEICNQ-NSWKGIVKRLWPNTKYIETVVTGSXGQYVPXLN 318
Query: 200 HYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLC 259
+Y DLPL+S YGSSE G N++P PE ++ PN YFEFIP G+
Sbjct: 319 YYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXDGGD------- 371
Query: 260 IEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTI 319
+ V L +VK+G YE +VTN AGLYR R+GD+V V GF+N+ P+ KF+ R N++L+I
Sbjct: 372 -KNDVVDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFKFVRRENVVLSI 430
Query: 320 NIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEVSG-------- 371
+ DK E+DL +V + DFTS+ D ST PGHYV++ EV
Sbjct: 431 DSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKET 490
Query: 372 ---EVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLG 427
E+++E L CC + S +D Y R K +IGPLE+RVV +GTF + D ++ G
Sbjct: 491 AQFELDEEALSTCCLVXEES-LDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLXDFFISQG 549
Query: 428 AALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 460
A+ Q+KTPRC+ + LQ+L + +FS
Sbjct: 550 ASTGQYKTPRCI--KSGKALQVLETCVVAKFFS 580
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 78 PDFHQSLYCHLLCGL---IFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSS 134
P + + H CG+ I RE + +T L + + + W E D + + +
Sbjct: 9 PQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPN 68
Query: 135 RITVPS-IRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNA--KYLSGIMTGSM 191
R T PS I+A LAD +H K GL ++ +A + S M GS+
Sbjct: 69 RQTFPSGIKA-----------LADYVHAK--------GLKLGIYSDAGSQTCSNKMPGSL 109
Query: 192 EHYLKKLRHYA 202
+H + ++ +A
Sbjct: 110 DHEEQDVKTFA 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,626,120
Number of Sequences: 62578
Number of extensions: 568408
Number of successful extensions: 936
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 7
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)