Query 012409
Match_columns 464
No_of_seqs 182 out of 650
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:53:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 2E-111 5E-116 907.1 41.0 453 4-463 127-581 (581)
2 4b2g_A GH3-1 auxin conjugating 100.0 6E-111 2E-115 906.0 35.0 454 4-463 128-589 (609)
3 4eql_A 4-substituted benzoates 100.0 2E-109 7E-114 892.5 30.8 445 4-460 122-580 (581)
4 3qov_A Phenylacetate-coenzyme 99.4 6.7E-12 2.3E-16 129.9 16.5 221 152-417 185-420 (436)
5 2y27_A Phenylacetate-coenzyme 99.4 9.8E-12 3.3E-16 128.7 16.2 221 152-417 189-422 (437)
6 2y4o_A Phenylacetate-coenzyme 99.3 2.8E-11 9.6E-16 125.4 19.5 220 152-417 191-426 (443)
7 3etc_A AMP-binding protein; ad 99.0 1.3E-08 4.5E-13 109.5 19.8 132 177-335 340-496 (580)
8 2d1s_A Luciferase, luciferin 4 99.0 7.7E-09 2.6E-13 110.3 15.8 134 177-335 308-462 (548)
9 4fuq_A Malonyl COA synthetase; 99.0 1.8E-08 6.1E-13 106.3 18.4 134 175-335 265-420 (503)
10 3ni2_A 4-coumarate:COA ligase; 98.9 1.5E-08 5.3E-13 107.5 17.8 135 176-335 295-455 (536)
11 2v7b_A Benzoate-coenzyme A lig 98.9 2.7E-08 9.1E-13 105.3 18.5 130 179-335 301-450 (529)
12 3nyq_A Malonyl-COA ligase; A/B 98.9 1.3E-08 4.4E-13 107.6 13.7 122 192-335 286-427 (505)
13 1t5h_X 4-chlorobenzoyl COA lig 98.9 6.3E-08 2.1E-12 101.9 18.2 152 152-335 251-423 (504)
14 3g7s_A Long-chain-fatty-acid-- 98.8 1.9E-08 6.3E-13 107.2 13.3 133 177-335 295-460 (549)
15 1mdb_A 2,3-dihydroxybenzoate-A 98.8 4.5E-08 1.5E-12 104.1 15.7 133 177-335 297-451 (539)
16 3rg2_A Enterobactin synthase c 98.8 6.1E-08 2.1E-12 104.9 17.0 152 153-335 282-455 (617)
17 3ivr_A Putative long-chain-fat 98.8 5.6E-09 1.9E-13 110.0 8.6 132 178-336 272-422 (509)
18 3e7w_A D-alanine--poly(phospho 98.8 3E-07 1E-11 96.9 21.4 135 175-336 257-420 (511)
19 3c5e_A Acyl-coenzyme A synthet 98.8 9E-08 3.1E-12 102.7 17.5 132 177-335 321-477 (570)
20 3rix_A Luciferase, luciferin 4 98.8 1.6E-08 5.5E-13 107.7 11.0 135 177-336 306-461 (550)
21 3fce_A D-alanine--poly(phospho 98.8 4.4E-08 1.5E-12 103.2 13.5 135 175-336 258-421 (512)
22 3ite_A SIDN siderophore synthe 98.7 1.4E-08 4.8E-13 108.2 8.7 134 177-336 293-449 (562)
23 3kxw_A Saframycin MX1 syntheta 98.7 8.5E-08 2.9E-12 102.5 14.6 63 268-335 392-479 (590)
24 3l8c_A D-alanine--poly(phospho 98.7 2.2E-08 7.4E-13 105.7 9.5 133 177-335 263-424 (521)
25 3o83_A Peptide arylation enzym 98.7 1.5E-08 5.1E-13 107.9 7.5 151 153-336 289-461 (544)
26 4gr5_A Non-ribosomal peptide s 98.7 3.3E-08 1.1E-12 105.8 9.6 134 177-336 325-491 (570)
27 3r44_A Fatty acyl COA syntheta 98.7 4.5E-08 1.5E-12 103.5 10.5 129 177-335 283-434 (517)
28 4dg8_A PA1221; ANL superfamily 98.7 9.7E-08 3.3E-12 103.7 13.1 134 177-335 275-440 (620)
29 1pg4_A Acetyl-COA synthetase; 98.7 6E-07 2E-11 97.9 19.1 229 177-454 377-645 (652)
30 1amu_A GRSA, gramicidin synthe 98.7 3.4E-07 1.1E-11 98.1 16.8 63 269-335 366-451 (563)
31 1ry2_A Acetyl-coenzyme A synth 98.7 4.7E-07 1.6E-11 99.0 17.9 229 177-452 383-659 (663)
32 3ipl_A 2-succinylbenzoate--COA 98.6 1.9E-07 6.4E-12 98.0 13.6 60 272-335 345-419 (501)
33 3tsy_A Fusion protein 4-coumar 98.5 1.4E-07 4.8E-12 107.4 10.1 134 177-336 343-503 (979)
34 4gs5_A Acyl-COA synthetase (AM 98.5 4.1E-07 1.4E-11 92.0 11.8 61 269-336 209-272 (358)
35 3gqw_A Fatty acid AMP ligase; 98.5 5.6E-07 1.9E-11 95.6 12.8 63 269-336 405-483 (576)
36 2vsq_A Surfactin synthetase su 98.4 2.4E-06 8.2E-11 100.2 15.6 132 178-335 720-882 (1304)
37 1v25_A Long-chain-fatty-acid-C 98.4 9.6E-07 3.3E-11 93.9 9.9 60 273-336 381-457 (541)
38 3hgu_A EHPF; phenazine, antibi 97.9 1.9E-05 6.4E-10 79.4 8.2 121 178-321 231-367 (369)
39 3lax_A Phenylacetate-coenzyme 97.1 0.0015 5E-08 54.3 8.2 88 312-417 2-93 (109)
40 3gxs_A Phenylacetate-coenzyme 97.1 0.0017 6E-08 54.1 8.1 88 311-417 1-93 (109)
41 3t5a_A Long-chain-fatty-acid-- 96.2 0.014 4.9E-07 60.0 9.8 39 269-312 414-480 (480)
42 3onr_A Protein transport prote 54.1 25 0.00085 27.0 5.5 47 322-369 15-62 (72)
43 2cc6_A VNG1446H, dodecin; flav 53.1 29 0.00098 26.4 5.6 48 322-370 13-61 (68)
44 2ux9_A Dodecin; flavoprotein; 43.1 29 0.00097 26.4 4.2 47 322-369 15-62 (69)
45 2yiz_A Dodecin; flavoprotein, 42.4 30 0.001 26.4 4.2 47 322-369 15-62 (69)
46 2vxa_A Dodecin; flavoprotein, 42.3 29 0.001 26.6 4.2 48 322-370 16-64 (72)
47 2qmx_A Prephenate dehydratase; 39.8 1.5E+02 0.0052 28.4 10.0 57 326-387 211-267 (283)
48 2qmw_A PDT, prephenate dehydra 33.4 1.8E+02 0.0061 27.7 9.2 85 297-387 163-255 (267)
49 3mwb_A Prephenate dehydratase; 32.3 1.8E+02 0.0063 28.3 9.3 85 298-387 175-269 (313)
50 2crf_A RAN binding protein 3; 27.3 62 0.0021 28.1 4.4 55 265-320 14-82 (150)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-111 Score=907.11 Aligned_cols=453 Identities=70% Similarity=1.199 Sum_probs=420.4
Q ss_pred hhhHHHhHHHHHhccCC-CC-CCceEEEEeccCccccCCCceeeccccccccCchhhhhhhhhcccccCCcccccCCChh
Q 012409 4 TLQIFRTSYAFRNREFP-IG-KGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFH 81 (464)
Q Consensus 4 ~~~~~~~~~~~~~~~~p-~~-~gk~l~~~~~~~~~~T~~Gip~g~~s~~~~~s~~f~~~~~~~~~~~tsP~ev~~~~d~~ 81 (464)
..+.+.+..+++++ +| +. .||+|+|++.+.+.+|++|+|+|++|+.+++|.+|++.+..+...||+|.+++.|+|..
T Consensus 127 ~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~~Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~ 205 (581)
T 4epl_A 127 TLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVH 205 (581)
T ss_dssp HHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECTTSCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHH
T ss_pred HHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCCCCceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHH
Confidence 34567778888887 77 88 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcccCCceeeEeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHhccCCCCHHHHHHHHH
Q 012409 82 QSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHK 161 (464)
Q Consensus 82 ~~~Y~~Ll~aL~~~~~v~~i~~~f~s~l~~~~~~l~~~weel~~dI~~Gti~~~i~~~~~R~~l~~~l~p~p~~A~~L~~ 161 (464)
|++||||||||+++++|.+|+++||++|++++++|+++|++||+||++|+++++++++++|++++++++|+|++|++|++
T Consensus 206 ~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~ 285 (581)
T 4epl_A 206 QALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRT 285 (581)
T ss_dssp HHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCccccCCCCceeEEEeecChHHHHHHHHHHhCCCCeeccccccccceeeecCCCCCCcccceeeecCCCc
Q 012409 162 KCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIG 241 (464)
Q Consensus 162 ~~~~~~~~~~~~~~lWP~l~~i~~~~tG~~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~~~~~~~~~l~~~~~ 241 (464)
+|+++.+|+|++++|||||++|+||+||+|++|+++|++|+|++|+++.+|+||||+||+|++|.++++.++|+|+||++
T Consensus 286 ~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ 365 (581)
T 4epl_A 286 KCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLG 365 (581)
T ss_dssp HHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSC
T ss_pred HhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcE
Confidence 99873249999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred eeEEEeCCCCCcccccccCCCcccccccccCCCeEEEEecccCceeeeeeCCEEEEecccCCCcEEEEEeecCceeeeee
Q 012409 242 YFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINI 321 (464)
Q Consensus 242 ffEFip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~~GLyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~G 321 (464)
||||||++ +.+++ ++++|+++|||+|++|||||||++||||||+||+|+|+||||++|+|+|+||++++||++|
T Consensus 366 ffEFiP~~--~~~~~----~~~~v~l~eve~G~~YelviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~G 439 (581)
T 4epl_A 366 YFEFLPVS--ETGEG----EEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINI 439 (581)
T ss_dssp EEEEEEC-------------CCCEEGGGCCTTCEEEEEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSS
T ss_pred EEEEEecc--cccCC----CCceeeHHHcCCCCeEEEEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeee
Confidence 99999988 34332 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEEEecCCCChHHHHHHHHHHHhhccCcchHhhhhcC
Q 012409 322 DKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVN 401 (464)
Q Consensus 322 Ekv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~E~~~~~~~~~l~~~~~~ld~~l~n~~Y~~~R~~g 401 (464)
||++|++|++||.+|.++|++.|+.|.|||+.+|.++.||||++|||+.++++++.+++||..||++|.|++|+.+|..+
T Consensus 440 e~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~~~~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~ 519 (581)
T 4epl_A 440 DKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCK 519 (581)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEESSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred eECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeecCCCCHHHHHHHHHHHHHHhCChhHHHHHhcC
Confidence 99999999999999988888899999999999998888999999999987777788999999999996699999999999
Q ss_pred ccCCeEEEEeccchHHHHHHHHhcCCCCCCCCCcCcccCCCCHhHHHHHhccccccccccCC
Q 012409 402 AIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 463 (464)
Q Consensus 402 ~l~pl~v~~v~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~~l~~~v~~~~~s~~~ 463 (464)
+|+|++|++|++|+|++|+++++++|+++||||+|||+.+++++++++|+++|+++|||+++
T Consensus 520 ~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~~~~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 520 TIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp SSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCCTTCHHHHHHHHTTEEEEEECCCC
T ss_pred CCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeecCCCHHHHHHHHhcccccccCCCC
Confidence 99999999999999999999999999999999999999222999999999999999999975
No 2
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=5.7e-111 Score=905.99 Aligned_cols=454 Identities=41% Similarity=0.754 Sum_probs=412.1
Q ss_pred hhhHHHhHHHHHhccCC-CCCCceEEEEeccCccccCCCceeeccccccccCchhhhhhhhhcccccCCcccccCCChhh
Q 012409 4 TLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQ 82 (464)
Q Consensus 4 ~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~T~~Gip~g~~s~~~~~s~~f~~~~~~~~~~~tsP~ev~~~~d~~~ 82 (464)
..+++.+..+++++++| +..||+|+|++.+.+.+|++|+|+|++|+.+++|.+|++++.++...|++|.+++.++|..|
T Consensus 128 ~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~Gi~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~ 207 (609)
T 4b2g_A 128 RQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQ 207 (609)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTSCEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCCcccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHH
Confidence 45568899999999999 78899999999999999999999999999999999999999889999999999999999999
Q ss_pred hHHHHHhhhcccCCceeeEeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHhccCCCCHHHHHHHHHH
Q 012409 83 SLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKK 162 (464)
Q Consensus 83 ~~Y~~Ll~aL~~~~~v~~i~~~f~s~l~~~~~~l~~~weel~~dI~~Gti~~~i~~~~~R~~l~~~l~p~p~~A~~L~~~ 162 (464)
++||||||||+++++|++|+++|++++++++++|+++|++||+||++|+++++++++++|.+|+++|+|+|++|++|+++
T Consensus 208 ~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Weel~~dI~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~ 287 (609)
T 4b2g_A 208 SMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGE 287 (609)
T ss_dssp HHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCccccCCCCceeEEEeecChHHHHHHHHHHhCCCCeeccccccccceeeecCCCCCCcccceeeecCCCce
Q 012409 163 CSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGY 242 (464)
Q Consensus 163 ~~~~~~~~~~~~~lWP~l~~i~~~~tG~~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~~~~~~~~~l~~~~~f 242 (464)
|+++ +|+|++++|||||++|+||++|+|++|+++|++|+|++|+++++|+||||+||+|++|.|+|+..+|+|+||++|
T Consensus 288 ~~~~-~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~f 366 (609)
T 4b2g_A 288 CSKD-NWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAY 366 (609)
T ss_dssp HTSS-CCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCE
T ss_pred hCCC-ccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHcCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEE
Confidence 9996 799999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred eEEEeCCCCCcccc-cccCCCcccccccccCCCeEEEEecccCceeeeeeCCEEEEecccCCCcEEEEEeecCceeeeee
Q 012409 243 FEFIPQRLGNLESQ-VLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINI 321 (464)
Q Consensus 243 fEFip~~~~~~~~~-~~~~~~~~l~l~eve~G~~YelVvTt~~GLyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~G 321 (464)
|||||++ +.+.. ...+++++|+++|||+|++|||||||++||||||+||+|+|+||||++|+|+|+||.+++||++|
T Consensus 367 fEFIP~~--~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~G 444 (609)
T 4b2g_A 367 FEFLPHE--HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDS 444 (609)
T ss_dssp EEEEEGG--GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSS
T ss_pred EEEEecc--ccccccccCCCCccccHhHcCCCCeEEEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccc
Confidence 9999988 33100 00136889999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEEEec-----CCCChHHHHHHHHHHHhhccCcchHh
Q 012409 322 DKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVS-----GEVNDEVLKECCNCLDRSFVDAGYVS 396 (464)
Q Consensus 322 Ekv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~E~~-----~~~~~~~l~~~~~~ld~~l~n~~Y~~ 396 (464)
||++|++|++||.+|.++|++.|++|.|||+.+|.++.||||++|||+. .+++.+.+++||..||++| |++|++
T Consensus 445 eki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~ 523 (609)
T 4b2g_A 445 DKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESL-NSVYRQ 523 (609)
T ss_dssp CCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHS-CHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEecccccCCCCHHHHHHHHHHHHHHh-CHHHHH
Confidence 9999999999999998888889999999999999888999999999985 2356678999999999996 999999
Q ss_pred hh-hcCccCCeEEEEeccchHHHHHHHHhcCCCCCCCCCcCcccCCCCHhHHHHHhccccccccccCC
Q 012409 397 AR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 463 (464)
Q Consensus 397 ~R-~~g~l~pl~v~~v~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~~l~~~v~~~~~s~~~ 463 (464)
+| ..++|+|++|++|++|+|++|+++++++|+++||||+|||++ +++++++|+++|+++|||+++
T Consensus 524 ~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR~~~--~~~~~~~L~~~v~~~~~s~~~ 589 (609)
T 4b2g_A 524 GRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVN--FTPIMELLDSRVVSSHFSPAL 589 (609)
T ss_dssp HHHTSCCSCCCEEEEECTTCSCC----------------CCSSCC----CCHHHHHTTEEEEEECCSC
T ss_pred HhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCcccC--CHHHHHHHHhcccccccCCCC
Confidence 99 557999999999999999999999999999999999999999 999999999999999999985
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=2e-109 Score=892.47 Aligned_cols=445 Identities=41% Similarity=0.731 Sum_probs=366.4
Q ss_pred hhhHHHhHHHHHhccCC-CCCCceEEEEeccCccccCCCceeeccccccccCchhhhhhhhhcccccCCcccccCCChhh
Q 012409 4 TLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQ 82 (464)
Q Consensus 4 ~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~T~~Gip~g~~s~~~~~s~~f~~~~~~~~~~~tsP~ev~~~~d~~~ 82 (464)
..+.+.+..+++++++| +..||+|+|++.+.+.+|+||+|+|++|+.+++|.+|++++.++...|++|.+++.++|..|
T Consensus 122 ~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~g~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~ 201 (581)
T 4eql_A 122 LTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTE 201 (581)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEEECHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeeecccchhhhhcchhhcccchhhhcccCchHhhcCCCHHH
Confidence 34568889999999999 88899999999999999999999999999999999999999889999999999999999999
Q ss_pred hHHHHHhhhcccCCceeeEeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHhccCC-CCHHHHHHHHH
Q 012409 83 SLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILK-PNPELADLIHK 161 (464)
Q Consensus 83 ~~Y~~Ll~aL~~~~~v~~i~~~f~s~l~~~~~~l~~~weel~~dI~~Gti~~~i~~~~~R~~l~~~l~-p~p~~A~~L~~ 161 (464)
++||||||||+++++|++|+++|++++++++++|+++|++||+||++|+++++|+++++|.++..+|+ |||++|++|++
T Consensus 202 ~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~~dI~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~ 281 (581)
T 4eql_A 202 SLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEE 281 (581)
T ss_dssp HHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred HhcCCCCCCCCccccCCCCceeEEEeecChHHHHHHHHHHhCCCCeeccccccccceeeecCCCCCCcccceeeecCCCc
Q 012409 162 KCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIG 241 (464)
Q Consensus 162 ~~~~~~~~~~~~~~lWP~l~~i~~~~tG~~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~~~~~~~~~l~~~~~ 241 (464)
+|+++ +|.|++++|||||++|+||+||+|++|+++|++|+|++|+++++|+||||+||+|+++.|+++..+|+|+||++
T Consensus 282 ~~~~~-~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ 360 (581)
T 4eql_A 282 ICNQN-SWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMS 360 (581)
T ss_dssp HHTSS-CCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSS
T ss_pred HhcCC-CccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcccCceeecCCcE
Confidence 99986 79999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred eeEEEeCCCCCcccccccCCCcccccccccCCCeEEEEecccCceeeeeeCCEEEEecccCCCcEEEEEeecCceeeeee
Q 012409 242 YFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINI 321 (464)
Q Consensus 242 ffEFip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~~GLyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~G 321 (464)
||||||.+ +.+ ++++++++|||+|++|||||||++||||||+||+|+|+|||+++|+|+|+||.+++||++|
T Consensus 361 ffEFip~~--~~~------~~~~v~l~eVe~G~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~G 432 (581)
T 4eql_A 361 YFEFIPMD--GGD------KNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDS 432 (581)
T ss_dssp EEEEEECS--TTC------CSSCEEGGGCCTTCEEEEEEECSSSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSS
T ss_pred EEEEEecc--ccC------CCcEeCHHHcCCCceEEEEEeeccceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeee
Confidence 99999988 332 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEEEecC-----------CCChHHHHHHHHHHHhhcc
Q 012409 322 DKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSG-----------EVNDEVLKECCNCLDRSFV 390 (464)
Q Consensus 322 Ekv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~E~~~-----------~~~~~~l~~~~~~ld~~l~ 390 (464)
||++|++|++||.+|.++|++.|++|.|||+.++.++.||||++|||++. +++++.+++||..||++|
T Consensus 433 ekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy~~~wel~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~L- 511 (581)
T 4eql_A 433 DKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESL- 511 (581)
T ss_dssp CCEEHHHHHHHHHHC--------------CEEEECSSSSBEEEEECC---------------CCHHHHHHHHHHHHHTS-
T ss_pred eECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeEEEEEEEecccccccccccCCCCHHHHHHHHHHHHHHh-
Confidence 99999999999999987777899999999999998888999999999852 145578999999999996
Q ss_pred CcchHhhh-hcCccCCeEEEEeccchHHHHHHHHhcCCCCCCCCCcCcccCCCCHhHHHHHhccccccccc
Q 012409 391 DAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 460 (464)
Q Consensus 391 n~~Y~~~R-~~g~l~pl~v~~v~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~~l~~~v~~~~~s 460 (464)
|++|+++| ..++|+||+|++|++|+|++|+++++++|+++||||+|||++ +++++++|+++|+++|||
T Consensus 512 N~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR~~~--~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 512 DNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCIK--SGKALQVLETCVVAKFFS 580 (581)
T ss_dssp CHHHHHHHHTTCCBCCCEEEC----------------------------------------------CEEC
T ss_pred CHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCcccC--CHHHHHHHHhcchheeec
Confidence 99999999 567999999999999999999999999999999999999999 999999999999999998
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.37 E-value=6.7e-12 Score=129.86 Aligned_cols=221 Identities=13% Similarity=0.143 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccc-eeeecCCCCCC
Q 012409 152 NPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEG-WIGANVNPSLP 228 (464)
Q Consensus 152 ~p~~A~~L~~~~~~~~~~~~~~~~lWP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg-~~gi~~~~~~~ 228 (464)
.|..+..|.+...+. + . ..-.++++ .++.+|. ....++++++.+ |++++ +.||+||+ ..++.....
T Consensus 185 ~P~~~~~l~~~~~~~-~---~-~~~~~~lr--~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~-- 253 (436)
T 3qov_A 185 IPSYAIRLAEVFQEE-G---I-DPRETTLK--TLVIGAEPHTDEQRRKIERML-NVKAY-NSFGMTEMNGPGVAFECQ-- 253 (436)
T ss_dssp CHHHHHHHHHHHHHT-T---C-CTTSSSCC--EEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEEGGGTEEEEEEECT--
T ss_pred CHHHHHHHHHHHHHc-C---C-CcccCCcc--EEEEeCCcCCHHHHHHHHHHh-CccEE-ecCcchhhcCCeeEEecC--
Confidence 467777776655442 2 1 11245777 2333442 446778888888 89988 99999997 332322221
Q ss_pred cccceeeecCCCceeEEEeCCCCCcccccccCCCcccccccccCCCeEEEEecccC----ceeeeeeCCEEEEecccCC-
Q 012409 229 PELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA----GLYRYRLGDVVKVMGFHNS- 303 (464)
Q Consensus 229 ~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~~----GLyRYr~GDvV~v~gf~~~- 303 (464)
...++.+.......|++++++ + .+|+.|+.+||++|+.. ...||+|||++++..--|.
T Consensus 254 -~~~g~~~~~~~~~v~i~d~~~-----------g-----~~~~~g~~Gel~v~~~~~~~~~~~~y~TGDl~~~~~~gc~c 316 (436)
T 3qov_A 254 -EQNGMHFWEDCYLVEIIDPET-----------G-----EPVPEGEIGELVLTTLDREMMPLIRYRTRDLTRILPGKCPC 316 (436)
T ss_dssp -TCSSEEECTTTEEEEEECTTT-----------C-----SBCSTTCCEEEEEEESSCCSSCCCSEEEEEEECEECSCCTT
T ss_pred -CCCeeEEccCceEEEEEECCC-----------C-----CCCCCCCceEEEEeccCcCCceEEEEEcCCEEEEcCCCCCC
Confidence 133455544566788887551 2 23678999999998752 2568999999999854221
Q ss_pred ---CcEE-EEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCceEE-eEEEeecCCCCCceEEEEEEecCC-CC-hH
Q 012409 304 ---TPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVV-DFTSHVDLSTDPGHYVIFWEVSGE-VN-DE 376 (464)
Q Consensus 304 ---~P~i-~f~gR~~~~l~v~GEkv~e~~v~~av~~a~~~l~~~~~~l~-~f~~~~~~~~~p~hY~~~~E~~~~-~~-~~ 376 (464)
.|++ .|+||.++++++.|++++..+|++++.+. .+ +. .+.+..+........+++++..+. .+ ..
T Consensus 317 G~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~--v~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~ 388 (436)
T 3qov_A 317 GRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PE--LGSNYLITLETVNNQDEMIVEVELSDLSTDNYI 388 (436)
T ss_dssp CCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TT--EEEEEEEEEEEETTEEEEEEEEEECTTCCCCHH
T ss_pred CCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cC--cCCcEEEEEEcCCCCcEEEEEEEEcCccccchh
Confidence 4556 99999999999999999999999998743 12 33 233332221123355678887621 11 11
Q ss_pred HHHHHHHHHHhhccCcchHhhhhcCccCCeEEEEeccchHH
Q 012409 377 VLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 417 (464)
Q Consensus 377 ~l~~~~~~ld~~l~n~~Y~~~R~~g~l~pl~v~~v~~GtF~ 417 (464)
..+++.+.+.+.+ +... --|..|.+|+.+.|.
T Consensus 389 ~~~~l~~~l~~~l--------~~~~-~~p~~i~~v~~~~lP 420 (436)
T 3qov_A 389 ELEKIRRDIIRQL--------KDEI-LVTPKVKLVKKGSLP 420 (436)
T ss_dssp HHHHHHHHHHHHH--------HHHH-SSCCEEEEECTTCCC
T ss_pred hHHHHHHHHHHHH--------HHhc-CCceEEEEeCCCccc
Confidence 2334444444433 1110 235589999987766
No 5
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.35 E-value=9.8e-12 Score=128.66 Aligned_cols=221 Identities=11% Similarity=0.089 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccc--e-eeecCCCC
Q 012409 152 NPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEG--W-IGANVNPS 226 (464)
Q Consensus 152 ~p~~A~~L~~~~~~~~~~~~~~~~lWP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg--~-~gi~~~~~ 226 (464)
.|..+..|.+...+. +. .. -+++++ .++.+|. ....++++++.+ |++++ +.||+||+ . ++.+.
T Consensus 189 ~Ps~~~~l~~~~~~~-~~--~~--~~~~lr--~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~g~~~~~~~--- 256 (437)
T 2y27_A 189 TPSYMLSIADEIERQ-GL--DP--VQSSLR--IGIFGAEPWTNDMRVAIEQRM-GIDAV-DIYGLSEVMGPGVASEC--- 256 (437)
T ss_dssp CHHHHHHHHHHHHHT-TC--CG--GGSSCC--EEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEETTTTEEEEEECC---
T ss_pred CHHHHHHHHHHHHHc-CC--Cc--ccCCee--EEEEcCccCCHHHHHHHHHHH-CcCEE-ecCCchhhcCCeeEEec---
Confidence 466777766654432 11 11 146787 2334442 446778888888 89988 99999995 2 44432
Q ss_pred CCcccceeeecCCCceeEEEeCCCCCcccccccCCCcccccccccCCCeEEEEecccCc----eeeeeeCCEEEEecccC
Q 012409 227 LPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG----LYRYRLGDVVKVMGFHN 302 (464)
Q Consensus 227 ~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~~G----LyRYr~GDvV~v~gf~~ 302 (464)
+....++++..+..++|+++++ +++ +|+.|+.+||++|+... +.||+|||++++....+
T Consensus 257 -~~~~~g~~~~~~~~~~~i~d~~-----------~g~-----~~~~g~~Gel~v~~~t~~~~~~~~y~TGDl~~~~~~~G 319 (437)
T 2y27_A 257 -VETKDGPTIWEDHFYPEIIDPE-----------TGE-----VLPDGELGELVFTSLTKEALPIIRYRTRDLTRLLPGTA 319 (437)
T ss_dssp -TTTCSSCEECTTTEEEEEECTT-----------TCC-----BCCTTCCEEEEEEESSCSSSCCCSEEEEEEECEECCSS
T ss_pred -CCCCCceeEccCceEEEEEcCC-----------CCC-----CCCCCCccEEEEecCCcCCchhheeecCCEEEEeCCCC
Confidence 1111245554456788988755 122 35689999999987643 56899999999985212
Q ss_pred -CCcEE-EEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEEEecCCCC--hHHH
Q 012409 303 -STPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVN--DEVL 378 (464)
Q Consensus 303 -~~P~i-~f~gR~~~~l~v~GEkv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~E~~~~~~--~~~l 378 (464)
..|++ .|+||.+++++++|+++++.+|++++.+. .++. ..+.+..+........+++++...+.. ....
T Consensus 320 ~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~ 392 (437)
T 2y27_A 320 RTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ------RALA-PHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAI 392 (437)
T ss_dssp SSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTC------TTBC-SCCEEEEEEETTEEEEEEEECBCTTTTTCHHHH
T ss_pred CCccccCccccccCCeEEECCeEECHHHHHHHHHhC------cCcC-ccEEEEEeecCCCceEEEEEEECCCccchhhhH
Confidence 46788 89999999999999999999999998743 1221 122222221112235567777643321 1123
Q ss_pred HHHHHHHHhhccCcchHhhhhcCccCCeEEEEeccchHH
Q 012409 379 KECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 417 (464)
Q Consensus 379 ~~~~~~ld~~l~n~~Y~~~R~~g~l~pl~v~~v~~GtF~ 417 (464)
+++.+.+.+.+ .... --|..|.++..+.|.
T Consensus 393 ~~l~~~l~~~l--------~~~~-~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 393 QVAKQALAYDI--------KSLI-GVTAVINVLPVNGIE 422 (437)
T ss_dssp HHHHHHHHHHH--------HHHH-CCCEEEEECCTTCSC
T ss_pred HHHHHHHHHHH--------HHhc-CCceEEEEeCCCCcc
Confidence 33444444332 1110 135578888766654
No 6
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.35 E-value=2.8e-11 Score=125.44 Aligned_cols=220 Identities=14% Similarity=0.100 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccc-e--eeecCCCC
Q 012409 152 NPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEG-W--IGANVNPS 226 (464)
Q Consensus 152 ~p~~A~~L~~~~~~~~~~~~~~~~lWP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg-~--~gi~~~~~ 226 (464)
.|..+..|.+...+. +. .. -+++++. ++.+|. ....++++++.+ |++++ +.||+||+ . ++....
T Consensus 191 ~Ps~~~~l~~~~~~~-~~--~~--~~~~lr~--i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~g~~~~~~~~-- 259 (443)
T 2y4o_A 191 TPSYMLNLIDEMVRQ-GM--DP--AESSLKI--GIFGAEPWTQALRNEVETRV-GIDAL-DIYGLSEVMGPGVACECV-- 259 (443)
T ss_dssp CHHHHHHHHHHHHHT-TC--CG--GGSSCCE--EEEESSCCCHHHHHHHHHHH-TCEEE-EEEEETTTTEEEEEEECT--
T ss_pred CHHHHHHHHHHHHHc-CC--Cc--ccCCceE--EEECCCcCCHHHHHHHHHHh-CcCEE-eccCchhhcCCeEEeccC--
Confidence 467777776654432 21 11 2467772 334442 446778888888 89988 99999995 2 344221
Q ss_pred CCcccceeeecCCCceeEEEeCCCCCcccccccCCCcccccccccCCCeEEEEecccCc----eeeeeeCCEEEEeccc-
Q 012409 227 LPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG----LYRYRLGDVVKVMGFH- 301 (464)
Q Consensus 227 ~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~~G----LyRYr~GDvV~v~gf~- 301 (464)
....++++..+..+.|+++++ +++ +|+.|+.+||++|+... +.||+|||++++.. .
T Consensus 260 --~~~~g~~~~~~~~~~~i~d~~-----------~g~-----~~~~G~~Gel~v~~~t~~~~p~~~y~TGDl~~~~~-~c 320 (443)
T 2y4o_A 260 --ETKDGPVIWEDHFYPEIIDPV-----------TGE-----VLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLP-PT 320 (443)
T ss_dssp --TTCCSEEECTTTEEEEEECTT-----------TCC-----BCCTTCCEEEEEEESSCSSSCCSSEEEEEEECEEC-CS
T ss_pred --CCCCceEEccCCeEEEEEcCC-----------CCC-----CCCCCCceEEEEeCCCcccChhheeecCCEEEEcC-CC
Confidence 112245554456678888755 122 35689999999987533 56899999999986 2
Q ss_pred C-CCcEE-EEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEEEecC--C--CCh
Q 012409 302 N-STPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSG--E--VND 375 (464)
Q Consensus 302 ~-~~P~i-~f~gR~~~~l~v~GEkv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~E~~~--~--~~~ 375 (464)
+ ..|+| .|+||.++++++.|+++++.+|++++.+. .++. ..+.+..+.......-+++++... . ...
T Consensus 321 G~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~ 393 (443)
T 2y4o_A 321 ARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL------PLLS-GQFQITLSRDGHMDRLDLAVELRSEAAASVTD 393 (443)
T ss_dssp SSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS------TTEE-EEEEEEEEEETTEEEEEEEEEECHHHHTTCCH
T ss_pred CCCccccCccccccCCeEEECCEEECHHHHHHHHHhC------cCcC-ccEEEEEecCCCCceEEEEEEECCcccccchh
Confidence 2 24777 89999999999999999999999999743 2321 123332221112234557777643 1 111
Q ss_pred HHHHHHHHHHHhhccCcchHhhhhcCccCCeEEEEeccchHH
Q 012409 376 EVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 417 (464)
Q Consensus 376 ~~l~~~~~~ld~~l~n~~Y~~~R~~g~l~pl~v~~v~~GtF~ 417 (464)
...+++.+.+.+.+ .... --|..|.++..+.+.
T Consensus 394 ~~~~~l~~~l~~~l--------~~~~-~~p~~v~~v~~~~lP 426 (443)
T 2y4o_A 394 GERAALARELQHRI--------KTMV-GVSSGVTVLAAGGIP 426 (443)
T ss_dssp HHHHHHHHHHHHHH--------HHHT-CCCCEEEEECTTCSC
T ss_pred hHHHHHHHHHHHHH--------HHHh-CCceEEEEeCCCccc
Confidence 22334444444432 1111 135578888777765
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.00 E-value=1.3e-08 Score=109.54 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=89.7
Q ss_pred CCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeecCCCC--CCcccceeeecCCCceeEEEeCCCCC
Q 012409 177 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLGN 252 (464)
Q Consensus 177 WP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~~ 252 (464)
.++|+ .++.+|. ....++++++.+ |++++ +.||+||+.+.+...+. ..+...+ ...|+. -.+.++.+
T Consensus 340 l~~lr--~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G-~p~~~~-~v~ivd~~--- 410 (580)
T 3etc_A 340 FSTLK--YAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIG-KPTPGY-KIELMDRD--- 410 (580)
T ss_dssp CTTCC--EEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCB-EECTTC-EEEEECTT---
T ss_pred Cccce--EEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCccc-cCCCCC-EEEEECCC---
Confidence 46777 2333442 335557777777 78988 99999998554322221 1111222 223332 23444322
Q ss_pred cccccccCCCcccccccccCCCeEEEEeccc--------Cceee-------------eeeCCEEEEecccCCCcEEEEEe
Q 012409 253 LESQVLCIEPKPVGLTEVKVGEEYEIIVTNV--------AGLYR-------------YRLGDVVKVMGFHNSTPELKFIC 311 (464)
Q Consensus 253 ~~~~~~~~~~~~l~l~eve~G~~YelVvTt~--------~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~g 311 (464)
+ .++++|+.+||+|++. .|+|+ |||||++++. ..-.+.|+|
T Consensus 411 ---------g-----~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d----~dG~l~~~G 472 (580)
T 3etc_A 411 ---------G-----RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMD----EDGYLWFVG 472 (580)
T ss_dssp ---------S-----CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEEC----TTSCEEEEE
T ss_pred ---------C-----CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEEC----CCCcEEEEe
Confidence 2 2467899999999863 34444 9999999987 556799999
Q ss_pred ecCceeeeeeeecCHHHHHHHHHH
Q 012409 312 RRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 312 R~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
|.++++++.|+++++.+|++++.+
T Consensus 473 R~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 473 RADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp ESSSCEEETTEEECHHHHHHHHTT
T ss_pred cCCCEEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999874
No 8
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=98.95 E-value=7.7e-09 Score=110.32 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=91.3
Q ss_pred CCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeecCCCC--CCcccceeeecCCCceeEEEeCCCCC
Q 012409 177 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLGN 252 (464)
Q Consensus 177 WP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~~ 252 (464)
+++++ .++.+|. ....++++++.+|+++++ +.||+||+.......+. ..+...+ ...|+. -.+.++++
T Consensus 308 l~~lr--~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G-~~~~~~-~~~i~d~~--- 379 (548)
T 2d1s_A 308 LSNLV--EIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASG-KVVPLF-KAKVIDLD--- 379 (548)
T ss_dssp CTTCC--EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCB-EECTTC-EEEEECTT---
T ss_pred cccee--EEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCC-ccCCCc-eEEEEeCC---
Confidence 46777 2333442 346678888888888888 99999997433222211 1111222 223432 34555433
Q ss_pred cccccccCCCcccccccccCCCeEEEEeccc---Ccee--------------eeeeCCEEEEecccCCCcEEEEEeecCc
Q 012409 253 LESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLY--------------RYRLGDVVKVMGFHNSTPELKFICRRNL 315 (464)
Q Consensus 253 ~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLy--------------RYr~GDvV~v~gf~~~~P~i~f~gR~~~ 315 (464)
++ .+++.|+.+||+++.. .|+| .|+|||++++. ..-.+.|+||.++
T Consensus 380 --------~~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~~GR~~d 442 (548)
T 2d1s_A 380 --------TK-----KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD----EEKHFFIVDRLKS 442 (548)
T ss_dssp --------TC-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTCCEEEEEEGGG
T ss_pred --------cC-----ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEc----CCCeEEEeccccc
Confidence 12 2366899999999763 4544 39999999997 4457999999999
Q ss_pred eeeeeeeecCHHHHHHHHHH
Q 012409 316 LLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 316 ~l~v~GEkv~e~~v~~av~~ 335 (464)
+++++|++++..+|++++.+
T Consensus 443 ~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 443 LIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp CBCBTTCCBCHHHHHHHHHT
T ss_pred eEEECCEEECHHHHHHHHHh
Confidence 99999999999999999974
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=98.95 E-value=1.8e-08 Score=106.28 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=90.9
Q ss_pred ccCCCCceeEEEeecC---hHHHHHHHHHHhCCCCeeccccccccceeeecCCC--CCCcccceeeecCCCceeEEEeCC
Q 012409 175 ELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNP--SLPPELATFAVLPNIGYFEFIPQR 249 (464)
Q Consensus 175 ~lWP~l~~i~~~~tG~---~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~--~~~~~~~~~~l~~~~~ffEFip~~ 249 (464)
...++++ .+.+|+ ...-.+++++.+ +++++ +.||+||+.+...... ...+...+ ..+|+. -.+.++.+
T Consensus 265 ~~~~~lr---~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G-~p~~~~-~~~i~d~~ 337 (503)
T 4fuq_A 265 ETTGHMR---LFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSNPYDGDRVPGAVG-PALPGV-SARVTDPE 337 (503)
T ss_dssp TTTTTCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCCCSSSCCCTTEEE-EBCTTC-EEEEECTT
T ss_pred cchhhcE---EEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCcccccCCCCCCcCCccc-cCCCCe-EEEEEECC
Confidence 3456777 444443 345566777777 78888 9999999865432111 11111111 223332 34555433
Q ss_pred CCCcccccccCCCcccccccccCCCeEEEEeccc---Cceee--------------eeeCCEEEEecccCCCcEEEEEee
Q 012409 250 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR--------------YRLGDVVKVMGFHNSTPELKFICR 312 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR 312 (464)
++ .+++.|+.+||+|+.. .|+|+ |||||++++. ..-.+.|+||
T Consensus 338 -----------~g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~~GR 397 (503)
T 4fuq_A 338 -----------TG-----KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKID----ERGYVHILGR 397 (503)
T ss_dssp -----------TC-----CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEEC----TTCEEEECCS
T ss_pred -----------CC-----CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEc----CCCcEEEEec
Confidence 12 2467999999999753 56654 9999999997 5578999999
Q ss_pred cCceeeeeeeecCHHHHHHHHHH
Q 012409 313 RNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 313 ~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
.+++++++|+++...+|++++.+
T Consensus 398 ~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 398 GKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp STTCEEETTEEECHHHHHHHHHT
T ss_pred CCCEEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999874
No 10
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=98.95 E-value=1.5e-08 Score=107.51 Aligned_cols=135 Identities=15% Similarity=0.131 Sum_probs=91.8
Q ss_pred cCCCCceeEEEeecC--hHHHHHHHHHHhCCCCeecccccccccee--eecC----CCC-CCcccceeeecCCCceeEEE
Q 012409 176 LFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWI--GANV----NPS-LPPELATFAVLPNIGYFEFI 246 (464)
Q Consensus 176 lWP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~--gi~~----~~~-~~~~~~~~~l~~~~~ffEFi 246 (464)
-.++|+ .++.+|. .....+++++.+|+++++ +.||+||+.. +.+. .+. ..+...+ ..+|+. -.+.+
T Consensus 295 ~l~~lr--~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~~-~~~i~ 369 (536)
T 3ni2_A 295 DLSSLR--MIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACG-TVVRNA-EMKIV 369 (536)
T ss_dssp CCTTCC--EEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCC-EECSSC-EEEEE
T ss_pred CCccce--EEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCee-EeCCCc-EEEEE
Confidence 346777 2334442 345667888888899999 9999999853 2221 010 0111122 223333 34555
Q ss_pred eCCCCCcccccccCCCcccccccccCCCeEEEEeccc---Cceee--------------eeeCCEEEEecccCCCcEEEE
Q 012409 247 PQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR--------------YRLGDVVKVMGFHNSTPELKF 309 (464)
Q Consensus 247 p~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~gf~~~~P~i~f 309 (464)
+.+ ++ .++..|+.+||+|+.. .|+|+ |||||++++. ....+.|
T Consensus 370 d~~-----------~~-----~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~----~dG~l~~ 429 (536)
T 3ni2_A 370 DPE-----------TG-----ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID----DDDELFI 429 (536)
T ss_dssp CTT-----------TC-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTSCEEE
T ss_pred eCC-----------CC-----cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEc----CCceEEE
Confidence 433 12 2467899999999743 45553 9999999987 5568999
Q ss_pred EeecCceeeeeeeecCHHHHHHHHHH
Q 012409 310 ICRRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 310 ~gR~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
+||.+++++++|++++..+|++++.+
T Consensus 430 ~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 430 VDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp EEECSCCEEETTEEECHHHHHHHHHT
T ss_pred EecccceEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999999874
No 11
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=98.93 E-value=2.7e-08 Score=105.32 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=85.0
Q ss_pred CCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccc-eeee-cCCCCCCcccceeeecCCCceeEEEeCCCCCcc
Q 012409 179 NAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEG-WIGA-NVNPSLPPELATFAVLPNIGYFEFIPQRLGNLE 254 (464)
Q Consensus 179 ~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg-~~gi-~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~ 254 (464)
.++ .++.+|. ....++++++.+ +++++ +.||+||+ .+.. +..........+ ..+|+. -.+.++.+
T Consensus 301 ~lr--~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G-~p~~~~-~~~i~d~~----- 369 (529)
T 2v7b_A 301 AIR--ICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTG-RPVPGY-EIELRDEA----- 369 (529)
T ss_dssp CCC--EEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCC-EECTTC-EEEEECTT-----
T ss_pred ceE--EEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCcc-cCCCCC-EEEEECCC-----
Confidence 566 2333442 345667788878 88988 99999997 3322 211111111222 233432 34555422
Q ss_pred cccccCCCcccccccccCCCeEEEEeccc---Cceee-------------eeeCCEEEEecccCCCcEEEEEeecCceee
Q 012409 255 SQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR-------------YRLGDVVKVMGFHNSTPELKFICRRNLLLT 318 (464)
Q Consensus 255 ~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~ 318 (464)
+ .+++.|+.+||+|+.. .|+|+ |++||++++. ....+.|+||.+++++
T Consensus 370 -------g-----~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~----~~G~l~~~GR~dd~ik 433 (529)
T 2v7b_A 370 -------G-----HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRL----PNGCYVYAGRSDDMLK 433 (529)
T ss_dssp -------S-----CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEEC----TTSCEEEEEEGGGCBC
T ss_pred -------C-----CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEEC----CCccEEEeCccCCeEE
Confidence 2 2466899999999763 56665 8999999987 4568999999999999
Q ss_pred eeeeecCHHHHHHHHHH
Q 012409 319 INIDKNTEKDLQLSVDE 335 (464)
Q Consensus 319 v~GEkv~e~~v~~av~~ 335 (464)
++|++++..+|++++.+
T Consensus 434 ~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 434 VSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp ----CBCHHHHHHHHTT
T ss_pred ECCEEECHHHHHHHHHh
Confidence 99999999999999874
No 12
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=98.87 E-value=1.3e-08 Score=107.55 Aligned_cols=122 Identities=15% Similarity=0.206 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCCeeccccccccceeeecCCCCC--CcccceeeecCCCceeEEEeCCCCCcccccccCCCccccccc
Q 012409 192 EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL--PPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTE 269 (464)
Q Consensus 192 ~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~--~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~~l~l~e 269 (464)
....+++++.+ +++++ +.||+||+.+.....+.. .+...+ ..+|+. -.+.++.+ ++.+. .
T Consensus 286 ~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG-~p~~~~-~~~i~d~~------------g~~~~--~ 347 (505)
T 3nyq_A 286 VHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVG-VPLPGV-ELRLVEED------------GTPIA--A 347 (505)
T ss_dssp HHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCC-EECTTC-EEEEC-----------------CCC--C
T ss_pred HHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCcc-cCCCCC-EEEEECCC------------CCCcc--c
Confidence 35556777777 88888 999999986544332211 111122 123332 23344322 22221 2
Q ss_pred ccCCCeEEEEeccc---Cceee--------------eeeCCEEEEecccCCCcEEEEEeec-CceeeeeeeecCHHHHHH
Q 012409 270 VKVGEEYEIIVTNV---AGLYR--------------YRLGDVVKVMGFHNSTPELKFICRR-NLLLTINIDKNTEKDLQL 331 (464)
Q Consensus 270 ve~G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~-~~~l~v~GEkv~e~~v~~ 331 (464)
++.|+.+||+|+.. .|+|. |||||++++. ....+.|+||. +++++++|+++...+|++
T Consensus 348 ~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~----~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~ 423 (505)
T 3nyq_A 348 LDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD----PDGYVRIVGRKATDLIKSGGYKIGAGEIEN 423 (505)
T ss_dssp CCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC----TTSCEEEEEESSCCCEEETTEEECHHHHHH
T ss_pred CCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC----CCccEEEeCCccCceEEeCCEEECHHHHHH
Confidence 34589999999653 56653 9999999997 45679999997 599999999999999999
Q ss_pred HHHH
Q 012409 332 SVDE 335 (464)
Q Consensus 332 av~~ 335 (464)
++.+
T Consensus 424 ~l~~ 427 (505)
T 3nyq_A 424 ALLE 427 (505)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 9874
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=98.86 E-value=6.3e-08 Score=101.91 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEeecC---hHHHHHHHHHHhCCCCeeccccccccceeeecCCCCCC
Q 012409 152 NPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLP 228 (464)
Q Consensus 152 ~p~~A~~L~~~~~~~~~~~~~~~~lWP~l~~i~~~~tG~---~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~~ 228 (464)
.|.....|.+...+. .-..-.++|+ .+.+|+ ....++++++.+ +.+++ +.||+||+.+.+... ..
T Consensus 251 ~P~~~~~l~~~~~~~-----~~~~~l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~- 318 (504)
T 1t5h_X 251 TPTHLDALAAAAAHA-----GSSLKLDSLR---HVTFAGATMPDAVLETVHQHL-PGEKV-NIYGTTEAMNSLYMR-QP- 318 (504)
T ss_dssp CHHHHHHHHHHHCCT-----TCCCCCTTCC---EEEECCTTCCHHHHHHHHHHC-CSEEE-EEEEETTTEEEEEEE-SC-
T ss_pred ChHHHHHHHhhhccc-----cccccCcccc---EEEEcCCcCCHHHHHHHHHhc-Cccee-eeecccccccccccc-CC-
Confidence 366666666554221 0111246777 444443 335667787878 57787 999999985444321 11
Q ss_pred cccceeeecCC-CceeEEEeCCCCCcccccccCCCcccccccccCCCeEEEEec-c---cCceee-------------ee
Q 012409 229 PELATFAVLPN-IGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVT-N---VAGLYR-------------YR 290 (464)
Q Consensus 229 ~~~~~~~l~~~-~~ffEFip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvT-t---~~GLyR-------------Yr 290 (464)
..+....|. ..-...++.+ .+ .. ..++.|+.+||+++ . ..|+|+ ||
T Consensus 319 --~~~~~g~p~~~~~~~i~~~~---~~------~~-----~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~ 382 (504)
T 1t5h_X 319 --KTGTEMAPGFFSEVRIVRIG---GG------VD-----EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYR 382 (504)
T ss_dssp --SSSSEEBCCTTCCEEEECTT---SC------TT-----CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEE
T ss_pred --CCCccccCCCCCceeEEecc---CC------CC-----CcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccc
Confidence 111122221 1123334322 10 11 24678999999998 3 257776 99
Q ss_pred eCCEEEEecccCCCcEEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 012409 291 LGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 291 ~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
|||++++. ..-.+.|+||.+++++++|++++..+|++++.+
T Consensus 383 TGDlg~~~----~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 383 TSDVAVWT----PEGTVRILGRVDDMIISGGENIHPSEIERVLGT 423 (504)
T ss_dssp EEEEEEEC----TTSCEEEEEEGGGCEEETTEEECHHHHHHHHTT
T ss_pred cCcEEEEC----CCceEEEeCcccCEEEECCEEECHHHHHHHHHh
Confidence 99999997 446799999999999999999999999999874
No 14
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=98.83 E-value=1.9e-08 Score=107.22 Aligned_cols=133 Identities=21% Similarity=0.249 Sum_probs=75.8
Q ss_pred CCCCceeEEEeecC---hHHHHHHHHHH----hCC--CCeeccccccccceeeecCCCCC---CcccceeeecCCCceeE
Q 012409 177 FPNAKYLSGIMTGS---MEHYLKKLRHY----AGD--LPLMSADYGSSEGWIGANVNPSL---PPELATFAVLPNIGYFE 244 (464)
Q Consensus 177 WP~l~~i~~~~tG~---~~~Y~~~l~~~----~~~--~~~~~~~y~aSEg~~gi~~~~~~---~~~~~~~~l~~~~~ffE 244 (464)
|+.++ .+.+|+ .....+++++. ++. +++. +.||+||+...+...+.. .+...+ ..+|+. -.+
T Consensus 295 ~~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G-~p~~~~-~~~ 368 (549)
T 3g7s_A 295 WSYLK---VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKSTTQG-VPMSDI-ELK 368 (549)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTTSCC-EECTTC-EEE
T ss_pred cccee---EEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCCCcc-ccCCCC-EEE
Confidence 56777 444443 33445566555 532 7787 999999975432221110 111122 223332 345
Q ss_pred EEeCCCCCcccccccCCCcccccccccCCCeEEEEeccc---Ccee------------------eeeeCCEEEEecccCC
Q 012409 245 FIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLY------------------RYRLGDVVKVMGFHNS 303 (464)
Q Consensus 245 Fip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLy------------------RYr~GDvV~v~gf~~~ 303 (464)
.++.+ ++ .++..|+.+||+|+.. .|+| .|||||++++. .
T Consensus 369 i~d~~-----------~g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~----~ 428 (549)
T 3g7s_A 369 VISLE-----------DG-----RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFID----E 428 (549)
T ss_dssp EECSS-----------SC-----CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEEC----T
T ss_pred EEeCC-----------CC-----cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEc----C
Confidence 55533 12 2467899999999653 4444 69999999997 5
Q ss_pred CcEEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 012409 304 TPELKFICRRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 304 ~P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
...+.|+||.+++++++|+++...+|++++.+
T Consensus 429 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 429 EGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp TSCEEEEEEC------------CHHHHHHHTT
T ss_pred CceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 57899999999999999999999999999874
No 15
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=98.82 E-value=4.5e-08 Score=104.12 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=88.7
Q ss_pred CCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeecCCCCCC---cccceeeecCCCceeEEEeCCCC
Q 012409 177 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLP---PELATFAVLPNIGYFEFIPQRLG 251 (464)
Q Consensus 177 WP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~~---~~~~~~~l~~~~~ffEFip~~~~ 251 (464)
.++|+ .++.+|. ....++++++.+ ++++. +.||+||+.+......... ....+. .+++..-...++.+
T Consensus 297 l~~lr--~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d~~-- 369 (539)
T 1mdb_A 297 LSSLQ--VLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRLDDPEEIIVNTQGK-PMSPYDESRVWDDH-- 369 (539)
T ss_dssp CTTCC--EEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCE-ESSTTCEEEEECTT--
T ss_pred cccee--EEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCCCCcHHhcCCCCCc-ccCCCceEEEECCC--
Confidence 36777 2334442 335567777777 78888 9999999876553311100 011222 22222223344322
Q ss_pred CcccccccCCCcccccccccCCCeEEEEeccc---Cceee--------------eeeCCEEEEecccCCCcEEEEEeecC
Q 012409 252 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR--------------YRLGDVVKVMGFHNSTPELKFICRRN 314 (464)
Q Consensus 252 ~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~ 314 (464)
+ .+++.|+.+||+|+.. .|+|+ |||||++++. ....+.|+||.+
T Consensus 370 ----------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~----~dG~l~~~GR~d 430 (539)
T 1mdb_A 370 ----------D-----RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT----RDGYIVVEGRAK 430 (539)
T ss_dssp ----------S-----CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEEC----TTSCEEEEEEGG
T ss_pred ----------C-----CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEEC----CCCcEEEecccc
Confidence 2 2467899999999653 45543 9999999987 446799999999
Q ss_pred ceeeeeeeecCHHHHHHHHHH
Q 012409 315 LLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 315 ~~l~v~GEkv~e~~v~~av~~ 335 (464)
++++++|++++..+|++++.+
T Consensus 431 d~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 431 DQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp GCEECSSCEECHHHHHHHHTT
T ss_pred ceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999874
No 16
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.82 E-value=6.1e-08 Score=104.88 Aligned_cols=152 Identities=12% Similarity=0.110 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeecCCCCCCc-
Q 012409 153 PELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPP- 229 (464)
Q Consensus 153 p~~A~~L~~~~~~~~~~~~~~~~lWP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~~~- 229 (464)
|.....|.+..... ..+.-.++|+ .++.+|. .....+++++.+ +++++ +.||+||+.+..........
T Consensus 282 P~~~~~l~~~~~~~-----~~~~~l~~lr--~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~ 352 (617)
T 3rg2_A 282 PPAVSLWLQALIEG-----ESRAQLASLK--LLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEK 352 (617)
T ss_dssp HHHHHHHHHHHHTT-----CCTTTTTTCC--EEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHH
T ss_pred hHHHHHHHHhhhcc-----cccccCCCcc--EEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccc
Confidence 55555555544332 1122356777 2333442 335567777777 78888 99999998765432211100
Q ss_pred --ccceeeecCCCceeEEEeCCCCCcccccccCCCcccccccccCCCeEEEEeccc---Cceee--------------ee
Q 012409 230 --ELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR--------------YR 290 (464)
Q Consensus 230 --~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR--------------Yr 290 (464)
...+..+.++. -...++.+ + .++..|+.+||+|+.. .|+|. ||
T Consensus 353 ~~~~~G~p~~~~~-~~~i~d~~------------~-----~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yr 414 (617)
T 3rg2_A 353 IIHTQGYPMCPDD-EVWVADAE------------G-----NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYC 414 (617)
T ss_dssp HHHCCCEESCTTC-EEEEECTT------------S-----CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEE
T ss_pred cccCCCccCCCCc-eEEEECCC------------C-----CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCcee
Confidence 01222222222 23333322 2 2467899999999653 55553 99
Q ss_pred eCCEEEEecccCCCcEEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 012409 291 LGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 291 ~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
|||++++. ....+.|+||.+++++++|+++...+|++++.+
T Consensus 415 TGDl~~~~----~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 415 SGDLISID----PEGYITVQGREKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp EEEEEEEC----TTSCEEEEEECSSEEEETTEEEEHHHHHHHHTT
T ss_pred cCceEEEc----CCceEEEEeecCCEEEECCEEeCHHHHHHHHHh
Confidence 99999997 456899999999999999999999999999874
No 17
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=98.82 E-value=5.6e-09 Score=109.98 Aligned_cols=132 Identities=13% Similarity=0.110 Sum_probs=71.2
Q ss_pred CCCceeEEEeecChHHHHHHHHHHhCCCCeeccccccccceeeecCC-CCCCcccceeeecCCCceeEEEeCCCCCcccc
Q 012409 178 PNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVN-PSLPPELATFAVLPNIGYFEFIPQRLGNLESQ 256 (464)
Q Consensus 178 P~l~~i~~~~tG~~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~-~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~ 256 (464)
+.++ .+.+|+....++++++.+++++++ +.||+||+....... ....+...+. .+|+. -.+.++.+
T Consensus 272 ~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~------- 338 (509)
T 3ivr_A 272 ASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPKSAGR-PLFWR-TVAVVDAE------- 338 (509)
T ss_dssp TTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTTSCCE-ECTTC-EEEEECTT-------
T ss_pred hhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCCcccc-cCCCc-EEEEECCC-------
Confidence 4566 444555446678888889899999 999999985422111 1111111222 33332 34444322
Q ss_pred cccCCCcccccccccCCCeEEEEeccc---Cceee-------------eeeCCEEEEecccCCCcEEEEEeec--Cceee
Q 012409 257 VLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR-------------YRLGDVVKVMGFHNSTPELKFICRR--NLLLT 318 (464)
Q Consensus 257 ~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~--~~~l~ 318 (464)
+ .+++.|+.+||+|+.. .|+|+ |||||++++. ....+.|+||. +++++
T Consensus 339 -----~-----~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~----~dG~l~~~GR~d~~d~ik 404 (509)
T 3ivr_A 339 -----D-----RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD----ADGYLFYAGRAPEKELIK 404 (509)
T ss_dssp -----S-----CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC----TTSCEEEEEEC-------
T ss_pred -----C-----CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC----CCceEEEeCCCCcceeEE
Confidence 2 2467899999999763 67776 9999999997 55689999999 99999
Q ss_pred eeeeecCHHHHHHHHHHH
Q 012409 319 INIDKNTEKDLQLSVDEA 336 (464)
Q Consensus 319 v~GEkv~e~~v~~av~~a 336 (464)
++|++++..+|++++.+.
T Consensus 405 ~~G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 405 TGGENVYPAEVEGALKQH 422 (509)
T ss_dssp ------------------
T ss_pred ECCEEECHHHHHHHHHhC
Confidence 999999999999999864
No 18
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=98.81 E-value=3e-07 Score=96.89 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=89.8
Q ss_pred ccCCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeec---CCC----CCCcccceeeecCCCceeEE
Q 012409 175 ELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNP----SLPPELATFAVLPNIGYFEF 245 (464)
Q Consensus 175 ~lWP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~---~~~----~~~~~~~~~~l~~~~~ffEF 245 (464)
...|.++ .++.+|. .....+++++.+++++++ +.||+||+...+. ... .......+ ...|+. -.+.
T Consensus 257 ~~~~~l~--~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~~-~~~i 331 (511)
T 3e7w_A 257 DLLPHAD--TFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVG-FAKPDM-NIFI 331 (511)
T ss_dssp TTCTTCC--EEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCB-EECTTC-EEEE
T ss_pred ccCCccc--EEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCc-ceeCCC-EEEE
Confidence 4556777 3344442 346668888889899999 9999999744221 100 00000122 123332 2344
Q ss_pred EeCCCCCcccccccCCCcccccccccCCCeEEEEeccc---Ccee-----------------eeeeCCEEEEecccCCCc
Q 012409 246 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLY-----------------RYRLGDVVKVMGFHNSTP 305 (464)
Q Consensus 246 ip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLy-----------------RYr~GDvV~v~gf~~~~P 305 (464)
++.+ + .+++.|+.+||+|+.. .|+| .|+|||+.++. .-
T Consensus 332 ~d~~------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-----dG 389 (511)
T 3e7w_A 332 MDEE------------G-----QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-----DG 389 (511)
T ss_dssp ECTT------------S-----CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-----TT
T ss_pred ECCC------------C-----CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-----CC
Confidence 4322 2 2467899999999742 3443 59999999873 25
Q ss_pred EEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 012409 306 ELKFICRRNLLLTINIDKNTEKDLQLSVDEA 336 (464)
Q Consensus 306 ~i~f~gR~~~~l~v~GEkv~e~~v~~av~~a 336 (464)
.+.|+||.+++++++|++++..+|++++.+.
T Consensus 390 ~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 420 (511)
T 3e7w_A 390 QIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420 (511)
T ss_dssp EEEEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred eEEEEccccCEEEECCEEeCHHHHHHHHHhC
Confidence 7999999999999999999999999999853
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=98.80 E-value=9e-08 Score=102.71 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=89.1
Q ss_pred CCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeecCCCC--CCcccceeeecCCCceeEEEeCCCCC
Q 012409 177 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLGN 252 (464)
Q Consensus 177 WP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~~ 252 (464)
.++++ .++.+|. ....++++++.+ +++++ +.||+||+.+.+...+. ..+...+. ..|+. -.+.++.+
T Consensus 321 ~~~lr--~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~v~i~d~~--- 391 (570)
T 3c5e_A 321 FPHLQ--NCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGT-AASCY-DVQIIDDK--- 391 (570)
T ss_dssp CTTCC--EEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTTC-CEEEECTT---
T ss_pred cccce--EEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccc-cCCCc-eEEEECCC---
Confidence 46777 3344452 345567777777 78888 99999998653322211 11112222 23332 34455422
Q ss_pred cccccccCCCcccccccccCCCeEEEEec-----c---cCceee-------------eeeCCEEEEecccCCCcEEEEEe
Q 012409 253 LESQVLCIEPKPVGLTEVKVGEEYEIIVT-----N---VAGLYR-------------YRLGDVVKVMGFHNSTPELKFIC 311 (464)
Q Consensus 253 ~~~~~~~~~~~~l~l~eve~G~~YelVvT-----t---~~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~g 311 (464)
+ .+|+.|+.+||+|+ . ..|+|. |+|||++++. ..-.+.|+|
T Consensus 392 ---------g-----~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d----~dG~l~~~G 453 (570)
T 3c5e_A 392 ---------G-----NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKD----EDGYFQFMG 453 (570)
T ss_dssp ---------S-----CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEEC----TTSCEEEEE
T ss_pred ---------C-----CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEc----CCceEEEEe
Confidence 2 24678999999997 2 245553 9999999987 446799999
Q ss_pred ecCceeeeeeeecCHHHHHHHHHH
Q 012409 312 RRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 312 R~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
|.+++++++|++++..+|++++.+
T Consensus 454 R~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 454 RADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp EGGGCEEETTEEECHHHHHHHHHT
T ss_pred cCCCEEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999874
No 20
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=98.79 E-value=1.6e-08 Score=107.72 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=66.4
Q ss_pred CCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeecCCCCC--CcccceeeecCCCceeEEEeCCCCC
Q 012409 177 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL--PPELATFAVLPNIGYFEFIPQRLGN 252 (464)
Q Consensus 177 WP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~--~~~~~~~~l~~~~~ffEFip~~~~~ 252 (464)
.++|+ .++.+|. ....++++++.++...++ +.||+||+...+...+.. .+...+ ..+|+. -.+.++.+
T Consensus 306 l~~lr--~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG-~~~~~~-~~~i~d~~--- 377 (550)
T 3rix_A 306 LSNLH--EIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVG-KVVPFF-EAKVVDLD--- 377 (550)
T ss_dssp CTTCC--EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEE-EECTTC-EEEEECTT---
T ss_pred ccccc--EEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcc-cccCCc-EEEEEeCC---
Confidence 46777 2334442 345667788888444466 999999985433222221 111122 223432 34555543
Q ss_pred cccccccCCCcccccccccCCCeEEEEeccc---Cceee--------------eeeCCEEEEecccCCCcEEEEEeecCc
Q 012409 253 LESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR--------------YRLGDVVKVMGFHNSTPELKFICRRNL 315 (464)
Q Consensus 253 ~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~ 315 (464)
++ .++..|+.+||+|+.. .|+|+ |+|||++++. ..-.+.|+||.++
T Consensus 378 --------~~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~----~dG~l~~~GR~dd 440 (550)
T 3rix_A 378 --------TG-----KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD----EDEHFFIVDRLKS 440 (550)
T ss_dssp --------TC-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTCCEEEC-----
T ss_pred --------CC-----cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe----CCceEEEEecchh
Confidence 12 2367899999999753 45553 9999999997 5568999999999
Q ss_pred eeeeeeeecCHHHHHHHHHHH
Q 012409 316 LLTINIDKNTEKDLQLSVDEA 336 (464)
Q Consensus 316 ~l~v~GEkv~e~~v~~av~~a 336 (464)
+++++|++++..+|++++.+.
T Consensus 441 ~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 441 LIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp ---------------------
T ss_pred eeEECCEEECHHHHHHHHHhC
Confidence 999999999999999999864
No 21
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=98.77 E-value=4.4e-08 Score=103.23 Aligned_cols=135 Identities=17% Similarity=0.250 Sum_probs=88.8
Q ss_pred ccCCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeec---CCCC----CCcccceeeecCCCceeEE
Q 012409 175 ELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPS----LPPELATFAVLPNIGYFEF 245 (464)
Q Consensus 175 ~lWP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~---~~~~----~~~~~~~~~l~~~~~ffEF 245 (464)
...|+++ .++.+|. .....+++++.+++++++ +.||+||+...+. .... ......+. ..++. -...
T Consensus 258 ~~~~~lr--~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i 332 (512)
T 3fce_A 258 SMLPNMK--TFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY-CKSDC-RLLI 332 (512)
T ss_dssp TTSTTCC--EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEE-ECTTC-EEEE
T ss_pred hhCcccc--EEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCcccc-ccCCc-EEEE
Confidence 3456787 3334442 345667888888899999 9999999754221 1100 00001121 22222 2233
Q ss_pred EeCCCCCcccccccCCCcccccccccCCCeEEEEeccc---Ccee-----------------eeeeCCEEEEecccCCCc
Q 012409 246 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLY-----------------RYRLGDVVKVMGFHNSTP 305 (464)
Q Consensus 246 ip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLy-----------------RYr~GDvV~v~gf~~~~P 305 (464)
++.+ + .+++.|+.+||+++.. .|+| -|+|||+.++. .-
T Consensus 333 ~d~~------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~-----dG 390 (512)
T 3fce_A 333 MKED------------G-----TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-----NG 390 (512)
T ss_dssp ECSS------------S-----CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEE-----TT
T ss_pred ECCC------------C-----CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEec-----CC
Confidence 3321 2 2366899999999743 5555 29999998773 24
Q ss_pred EEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 012409 306 ELKFICRRNLLLTINIDKNTEKDLQLSVDEA 336 (464)
Q Consensus 306 ~i~f~gR~~~~l~v~GEkv~e~~v~~av~~a 336 (464)
.+.|+||.+++++++|++++..+|++++.+.
T Consensus 391 ~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~ 421 (512)
T 3fce_A 391 LLFYNGRLDFQIKLHGYRMELEEIEHHLRAC 421 (512)
T ss_dssp EEEEEEEGGGCEEETTEEECHHHHHHHHHHS
T ss_pred EEEEecccCCEEEECCEEECHHHHHHHHHhC
Confidence 7999999999999999999999999999743
No 22
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=98.74 E-value=1.4e-08 Score=108.23 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=65.3
Q ss_pred CCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeec---CCCCCCcccceeeecCCCceeEEEeCCCC
Q 012409 177 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPSLPPELATFAVLPNIGYFEFIPQRLG 251 (464)
Q Consensus 177 WP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~---~~~~~~~~~~~~~l~~~~~ffEFip~~~~ 251 (464)
.++|+ .++.+|. .....+++++.+ +++++ +.||+||+.+... ..+.......+ ..+++. -...++.+
T Consensus 293 ~~~lr--~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G-~p~~~~-~~~i~d~~-- 364 (562)
T 3ite_A 293 APHLV--YLGVGGEKMTPRTQQIWSSSD-RVALV-NVYGPTEVTIGCSAGRILPDSDTRCIG-HPLGDS-VAHVLAPG-- 364 (562)
T ss_dssp STTCC--EEEEESSCCCHHHHHHHTTCS-SCEEE-EEECCGGGCSCSEEEECCTTSCTTEEE-EECTTC-EEEEECTT--
T ss_pred cCceE--EEEEecCCCCHHHHHHHhhCC-CcEEE-EeeccchheeeeeeeeecCCCCCcccc-ccCCCC-eEEEEeCC--
Confidence 45677 2333442 223445555544 78888 9999999744221 11111111112 222332 23444333
Q ss_pred CcccccccCCCcccccccccCCCeEEEEeccc---Ccee---------------eeeeCCEEEEecccCCCcEEEEEeec
Q 012409 252 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLY---------------RYRLGDVVKVMGFHNSTPELKFICRR 313 (464)
Q Consensus 252 ~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLy---------------RYr~GDvV~v~gf~~~~P~i~f~gR~ 313 (464)
. + .+++.|+.+||+|... .|+| .|+|||+.++. ..-.+.|+||.
T Consensus 365 -~--------~-----~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d----~dG~l~~~GR~ 426 (562)
T 3ite_A 365 -S--------N-----EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMD----ADSSILFLGRK 426 (562)
T ss_dssp -S--------S-----CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEEC----TTSCEEEEEEC
T ss_pred -C--------C-----CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEc----CCCeEEEEccc
Confidence 1 2 2367899999999653 5665 49999999997 55689999999
Q ss_pred CceeeeeeeecCHHHHHHHHHHH
Q 012409 314 NLLLTINIDKNTEKDLQLSVDEA 336 (464)
Q Consensus 314 ~~~l~v~GEkv~e~~v~~av~~a 336 (464)
+++++++|++++..+|++++.+.
T Consensus 427 dd~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 427 DEQVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp -----------------------
T ss_pred cCEEeECcEEECHHHHHHHHHhc
Confidence 99999999999999999999754
No 23
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=98.73 E-value=8.5e-08 Score=102.47 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=53.0
Q ss_pred ccccCCCeEEEEeccc---Ccee----------------------eeeeCCEEEEecccCCCcEEEEEeecCceeeeeee
Q 012409 268 TEVKVGEEYEIIVTNV---AGLY----------------------RYRLGDVVKVMGFHNSTPELKFICRRNLLLTINID 322 (464)
Q Consensus 268 ~eve~G~~YelVvTt~---~GLy----------------------RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~GE 322 (464)
.+++.|+.+||+|+.. .|+| .|||||++++. + -.+.|+||.+++++++|+
T Consensus 392 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d---d--G~l~~~GR~dd~Ik~~G~ 466 (590)
T 3kxw_A 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH---E--NELYVTGRIKDLIIIYGK 466 (590)
T ss_dssp CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE---T--TEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE---C--CEEEEEcCccceEEECCE
Confidence 3577899999999663 4444 59999999886 1 368999999999999999
Q ss_pred ecCHHHHHHHHHH
Q 012409 323 KNTEKDLQLSVDE 335 (464)
Q Consensus 323 kv~e~~v~~av~~ 335 (464)
+++..+|++++..
T Consensus 467 ~v~p~eIE~~l~~ 479 (590)
T 3kxw_A 467 NHYPQDIEFSLMH 479 (590)
T ss_dssp TTHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHh
Confidence 9999999999953
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=98.73 E-value=2.2e-08 Score=105.70 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=85.1
Q ss_pred CCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeecCCCC-------CCcccceeeecCCCceeEEEe
Q 012409 177 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS-------LPPELATFAVLPNIGYFEFIP 247 (464)
Q Consensus 177 WP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~-------~~~~~~~~~l~~~~~ffEFip 247 (464)
.|+++ .++.+|. .....+++.+.+++++++ +.||+||+...+..... ......+ ...|+. -.+.++
T Consensus 263 ~~~lr--~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG-~p~~~~-~~~i~d 337 (521)
T 3l8c_A 263 MPALT--HFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIG-YPKPDS-PTYIID 337 (521)
T ss_dssp CTTCC--EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEE-EECTTS-CEEEEC
T ss_pred Cccce--EEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCccccc-cccCCC-EEEEEC
Confidence 46777 3344442 335667787888899999 99999997543211000 0000122 223332 234443
Q ss_pred CCCCCcccccccCCCcccccccccCCCeEEEEeccc---Cceee-----------------eeeCCEEEEecccCCCcEE
Q 012409 248 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR-----------------YRLGDVVKVMGFHNSTPEL 307 (464)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR-----------------Yr~GDvV~v~gf~~~~P~i 307 (464)
.+ + .+++.|+.+||+|+.. .|+|+ |+|||+.++. ....+
T Consensus 338 ~~------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d----~dG~l 396 (521)
T 3l8c_A 338 ED------------G-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT----EDNIL 396 (521)
T ss_dssp TT------------S-----CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEC----SSSCE
T ss_pred CC------------c-----CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEe----CCCeE
Confidence 22 2 2467899999999763 55553 9999999997 55679
Q ss_pred EEEeecCceeeeeeeecCHHHHHHHHHH
Q 012409 308 KFICRRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 308 ~f~gR~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
.|+||.++++++.|++++..+|++++.+
T Consensus 397 ~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 397 LYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp EEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred EEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 9999999999999999999999999874
No 25
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=98.70 E-value=1.5e-08 Score=107.93 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeecCCCCCCc-
Q 012409 153 PELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPP- 229 (464)
Q Consensus 153 p~~A~~L~~~~~~~~~~~~~~~~lWP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~~~~~~~~- 229 (464)
|.....|.+..... ..-.+.|+ .++.+|. .....+++++.+ +++++ +.||+||+.+..........
T Consensus 289 P~~~~~l~~~~~~~-------~~~~~~lr--~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 289 PSAVIMWLEKAAQY-------KDQIQSLK--LLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp HHHHHHHHHHHTTT-------HHHHTTCC--EEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHH
T ss_pred hHHHHHHHhchhhc-------cccCCcce--EEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhh
Confidence 55555555544331 12235677 2334442 345667777778 88888 99999998654432111100
Q ss_pred --ccceeeecCCCceeEEEeCCCCCcccccccCCCcccccccccCCCeEEEEeccc---Cceee--------------ee
Q 012409 230 --ELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR--------------YR 290 (464)
Q Consensus 230 --~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR--------------Yr 290 (464)
...+..+.++ .-.+.++.+ + .+++.|+.+||+++.. .|+|+ ||
T Consensus 358 ~~~~~G~p~~~~-~~~~i~d~~------------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~ 419 (544)
T 3o83_A 358 IFTTQGRPISSD-DEIKIVDEQ------------Y-----REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYY 419 (544)
T ss_dssp HHHCCCEESCTT-CEEEEECTT------------S-----CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEE
T ss_pred ccCCCceecCCC-cEEEEECCC------------C-----CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeE
Confidence 1122222222 233444322 2 2467899999999763 45553 99
Q ss_pred eCCEEEEecccCCCcEEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 012409 291 LGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 336 (464)
Q Consensus 291 ~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~a 336 (464)
|||++++. ....+.|+||.+++++++|++++..+|++++.+.
T Consensus 420 TGDlg~~~----~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 420 SGDLVQRT----PDGNLRVVGRIKDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp EEEEEEEC----TTSCEEEEEEEC----------------------
T ss_pred cCCEEEEc----CCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhC
Confidence 99999987 5568999999999999999999999999999865
No 26
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=98.69 E-value=3.3e-08 Score=105.83 Aligned_cols=134 Identities=17% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeee--c-CCCCC---CcccceeeecCCCceeEEEeC
Q 012409 177 FPNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGA--N-VNPSL---PPELATFAVLPNIGYFEFIPQ 248 (464)
Q Consensus 177 WP~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi--~-~~~~~---~~~~~~~~l~~~~~ffEFip~ 248 (464)
.++|+ .++.+|. ...-..++.+.+++++++ +.||+||+.... + ..... .....+ ..+|+ .|+.-.
T Consensus 325 ~~~lr--~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG-~p~~~---~~v~i~ 397 (570)
T 4gr5_A 325 FEGVR--YAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIG-VPLAG---KRAYVL 397 (570)
T ss_dssp GTTCS--EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCB-EECTT---EEEEEE
T ss_pred CCCce--EEEEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCccccc-eeeCC---CEEEEE
Confidence 45677 3344442 235567777788899999 999999974321 1 11000 000112 12232 233333
Q ss_pred CCCCcccccccCCCcccccccccCCCeEEEEecc---cCceee----------------------eeeCCEEEEecccCC
Q 012409 249 RLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR----------------------YRLGDVVKVMGFHNS 303 (464)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt---~~GLyR----------------------Yr~GDvV~v~gf~~~ 303 (464)
++ + + .++..|+.+||+|.. ..|+|+ |||||+.++. .
T Consensus 398 d~--~--------~-----~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d----~ 458 (570)
T 4gr5_A 398 DD--D--------L-----KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRR----A 458 (570)
T ss_dssp CT--T--------S-----CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEEC----T
T ss_pred CC--C--------C-----CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEEC----C
Confidence 31 1 2 246789999999965 355553 9999999987 5
Q ss_pred CcEEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 012409 304 TPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 336 (464)
Q Consensus 304 ~P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~a 336 (464)
.-.+.|+||.+++++++|++++..+|++++.+.
T Consensus 459 dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 459 DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp TSCEEEEEC------------------------
T ss_pred CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 567999999999999999999999999999864
No 27
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=98.69 E-value=4.5e-08 Score=103.54 Aligned_cols=129 Identities=13% Similarity=0.147 Sum_probs=82.9
Q ss_pred CCCCceeEEEeecC---hHHHHHHHHHHhCCCCeeccccccccceeeec--CCC--CCCcccceeeecCCCceeEEEeCC
Q 012409 177 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGAN--VNP--SLPPELATFAVLPNIGYFEFIPQR 249 (464)
Q Consensus 177 WP~l~~i~~~~tG~---~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~--~~~--~~~~~~~~~~l~~~~~ffEFip~~ 249 (464)
.|+++ .+.+|+ .....+++++. +++++ +.||+||+..... ... .......+. ..+ ..|..-.+
T Consensus 283 ~~~lr---~i~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~---~~~~~i~d 352 (517)
T 3r44_A 283 APDFR---YFITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAGSAGR-ATM---FTDVAVRG 352 (517)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTTCCBE-ECT---TEEEEEEC
T ss_pred CCccc---EEEECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCCCCCc-CCC---CeEEEEEC
Confidence 35677 444443 23444555443 78888 9999999743221 110 111111221 122 23433333
Q ss_pred CCCcccccccCCCcccccccccCCCeEEEEeccc---Cceee-------------eeeCCEEEEecccCCCcEEEEEeec
Q 012409 250 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR-------------YRLGDVVKVMGFHNSTPELKFICRR 313 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~ 313 (464)
++ +. .++.| .+||+|+.. .|+|+ |||||++++. ....+.|+||.
T Consensus 353 --~~--------~~-----~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~----~dG~l~~~GR~ 412 (517)
T 3r44_A 353 --DD--------GV-----IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEID----DEGYLYIKDRL 412 (517)
T ss_dssp --TT--------SC-----EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEEC----TTSCEEEEECG
T ss_pred --CC--------CC-----CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEc----CCeeEEEecCC
Confidence 11 22 24567 899999763 66765 9999999997 45689999999
Q ss_pred CceeeeeeeecCHHHHHHHHHH
Q 012409 314 NLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 314 ~~~l~v~GEkv~e~~v~~av~~ 335 (464)
+++++++|+++...+|++++.+
T Consensus 413 dd~ik~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 413 KDMIISGGENVYPAEIESVIIG 434 (517)
T ss_dssp GGCEEETTEEECHHHHHHHHTT
T ss_pred cCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999874
No 28
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=98.68 E-value=9.7e-08 Score=103.72 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=86.0
Q ss_pred CCCCceeEEEeecC-h-HHHHHHHHHHhCCCCeeccccccccceeeec---CCCCC---CcccceeeecCCCceeEEEeC
Q 012409 177 FPNAKYLSGIMTGS-M-EHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPSL---PPELATFAVLPNIGYFEFIPQ 248 (464)
Q Consensus 177 WP~l~~i~~~~tG~-~-~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~---~~~~~---~~~~~~~~l~~~~~ffEFip~ 248 (464)
.++|+ .++.+|. . ..-..++.+.+++++++ +.||+||+.+... ..+.. .+...+ ..+|+. -...++.
T Consensus 275 l~~lr--~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG-~p~~~~-~~~i~d~ 349 (620)
T 4dg8_A 275 LGGLR--QLLTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIG-KAIAGT-AVLLLDE 349 (620)
T ss_dssp GTTCS--EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCB-EECTTE-EEEEECT
T ss_pred CCCcc--EEEEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCce-ecccCc-EEEEECc
Confidence 45777 2334442 2 24445565667789999 9999999754221 11110 000111 122332 2334432
Q ss_pred CCCCcccccccCCCcccccccccCCCeEEEEeccc---Ccee---------------------eeeeCCEEEEecccCCC
Q 012409 249 RLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLY---------------------RYRLGDVVKVMGFHNST 304 (464)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLy---------------------RYr~GDvV~v~gf~~~~ 304 (464)
+ +.. -++.|+.+||+|... .|+| .|||||++++. ..
T Consensus 350 ~------------~~~----~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~----~d 409 (620)
T 4dg8_A 350 H------------GQE----IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD----EQ 409 (620)
T ss_dssp T------------SCB----CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC----TT
T ss_pred c------------CCC----CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC----CC
Confidence 2 111 156899999999532 4443 29999999987 55
Q ss_pred cEEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 012409 305 PELKFICRRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 305 P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
-.+.|+||.|++++++|+++...+|++++.+
T Consensus 410 G~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 410 GRLRFIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp SCEEEEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred CeEEEEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 6899999999999999999999999999985
No 29
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=98.67 E-value=6e-07 Score=97.90 Aligned_cols=229 Identities=11% Similarity=0.066 Sum_probs=121.4
Q ss_pred CCCCceeEEEeecC--hHHHHHHHHHHhC--CCCeeccccccccceeeecCC-CCC---CcccceeeecCCCceeEEEeC
Q 012409 177 FPNAKYLSGIMTGS--MEHYLKKLRHYAG--DLPLMSADYGSSEGWIGANVN-PSL---PPELATFAVLPNIGYFEFIPQ 248 (464)
Q Consensus 177 WP~l~~i~~~~tG~--~~~Y~~~l~~~~~--~~~~~~~~y~aSEg~~gi~~~-~~~---~~~~~~~~l~~~~~ffEFip~ 248 (464)
.+.|++ ++.+|. ...-.+++.+.+| +++++ +.||.||....+... +.. .+...+ ..+|+. -...++.
T Consensus 377 l~sLr~--i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G-~p~~g~-~v~i~d~ 451 (652)
T 1pg4_A 377 RSSLRI--LGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSAT-RPFFGV-QPALVDN 451 (652)
T ss_dssp CTTCCE--EEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCB-SBCTTC-CEEEECT
T ss_pred cCceEE--EEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCccc-cCcCCC-eEEEECC
Confidence 357772 333442 2344566777774 28888 999999975322111 110 011122 122332 1233332
Q ss_pred CCCCcccccccCCCcccccccccCCCeEEEEeccc-----Cceee----------------eeeCCEEEEecccCCCcEE
Q 012409 249 RLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV-----AGLYR----------------YRLGDVVKVMGFHNSTPEL 307 (464)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~-----~GLyR----------------Yr~GDvV~v~gf~~~~P~i 307 (464)
+ + .+++.|+.+||+|+.. .|+|+ |++||++++. ..-.+
T Consensus 452 ~------------g-----~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d----~dG~l 510 (652)
T 1pg4_A 452 E------------G-----HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD----EDGYY 510 (652)
T ss_dssp T------------C-----CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC----TTSCE
T ss_pred C------------C-----CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEc----CCCcE
Confidence 2 2 2466899999999762 33432 9999999997 44679
Q ss_pred EEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCceEEeEEEee-cCCCCCceEEEEEEecCC--CChHHHHHHHHH
Q 012409 308 KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHV-DLSTDPGHYVIFWEVSGE--VNDEVLKECCNC 384 (464)
Q Consensus 308 ~f~gR~~~~l~v~GEkv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~-~~~~~p~hY~~~~E~~~~--~~~~~l~~~~~~ 384 (464)
.|+||.+++++++|+++...+|++++.+. . .|.+..++. +.......-+.|+.+... .+++..+++.+.
T Consensus 511 ~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p--~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~ 582 (652)
T 1pg4_A 511 WITGRVDDVLNVSGHRLGTAEIESALVAH------P--KIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNW 582 (652)
T ss_dssp EEEEESSSEEEETTEEEEHHHHHHHHHHS------T--TEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred EEEecCCCEEEECCEEECHHHHHHHHHhC------C--CcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999743 1 344554432 211111133466766432 233334445444
Q ss_pred HHhhccCcchHhhhhcCccCCeEEEEec------cchH--HHHHHHHhcCCCCCCCCCcCcccCCCCHhHHHHHhccc
Q 012409 385 LDRSFVDAGYVSARKVNAIGPLELRVVL------KGTF--QQILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNI 454 (464)
Q Consensus 385 ld~~l~n~~Y~~~R~~g~l~pl~v~~v~------~GtF--~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~~l~~~v 454 (464)
+.+.+ +.|. .|-.|.+|+ .|-. ..+++.. . + ...+.+.+--+. |++.++.+.+.+
T Consensus 583 l~~~l--~~~~--------~P~~i~~v~~lP~T~sGKi~R~~L~~~~-~-~-~~~~~~~~~~l~--~p~~~~~~~~~~ 645 (652)
T 1pg4_A 583 VRKEI--GPLA--------TPDVLHWTDSLPKTRSGKIMRRILRKIA-A-G-DTSNLGDTSTLA--DPGVVEKLLEEK 645 (652)
T ss_dssp HHHHT--CGGG--------CCSEEEECSCCCBCTTSCBCHHHHHHHH-H-T-C----------C--CTTHHHHHHHHH
T ss_pred HHHhC--CCCc--------CCeEEEEcCCCCCCCCccchHHHHHHHH-h-C-CCCCCCCccccC--CHHHHHHHHHHh
Confidence 44432 2232 244444443 2322 2233322 1 2 113556666777 888888766543
No 30
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=98.67 E-value=3.4e-07 Score=98.09 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=53.9
Q ss_pred cccCCCeEEEEeccc---Ccee--------------------eeeeCCEEEEecccCCCcEEEEEeecCceeeeeeeecC
Q 012409 269 EVKVGEEYEIIVTNV---AGLY--------------------RYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNT 325 (464)
Q Consensus 269 eve~G~~YelVvTt~---~GLy--------------------RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~GEkv~ 325 (464)
++..|+.+||+|+.. .|+| .|+|||++++. ..-.+.|+||.+++++++|++++
T Consensus 366 ~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d----~dG~l~i~GR~~d~Ik~~G~~V~ 441 (563)
T 1amu_A 366 LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWL----SDGNIEYLGRIDNQVKIRGHRVE 441 (563)
T ss_dssp BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEEC----TTSCEEEEEEGGGEEEETTEEEE
T ss_pred CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEc----CCCeEEEeccccCEEEECCEEeC
Confidence 366899999999653 4554 59999999987 44679999999999999999999
Q ss_pred HHHHHHHHHH
Q 012409 326 EKDLQLSVDE 335 (464)
Q Consensus 326 e~~v~~av~~ 335 (464)
..+|++++.+
T Consensus 442 p~eIE~~l~~ 451 (563)
T 1amu_A 442 LEEVESILLK 451 (563)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 31
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=98.66 E-value=4.7e-07 Score=99.02 Aligned_cols=229 Identities=12% Similarity=0.131 Sum_probs=117.5
Q ss_pred CCCCceeEEEeecC---hHHHHHHHHHHhC--CCCeecccccccccee--eecCC-CC--CCcccceeeecCCCceeEEE
Q 012409 177 FPNAKYLSGIMTGS---MEHYLKKLRHYAG--DLPLMSADYGSSEGWI--GANVN-PS--LPPELATFAVLPNIGYFEFI 246 (464)
Q Consensus 177 WP~l~~i~~~~tG~---~~~Y~~~l~~~~~--~~~~~~~~y~aSEg~~--gi~~~-~~--~~~~~~~~~l~~~~~ffEFi 246 (464)
.+.|+ ++.+|+ ....++.+.+.+| +++++ +.||.||+.. ..+.. .. ..+...+. .+|+. -.+.+
T Consensus 383 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~-p~~g~-~v~i~ 456 (663)
T 1ry2_A 383 LKSLR---CLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASF-PFFGI-DAVVL 456 (663)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCE-ECTTC-CEEEE
T ss_pred cCceE---EEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCcccc-CcCCC-eEEEE
Confidence 35677 444443 3345567777674 38898 9999999743 22211 00 11112222 23332 23444
Q ss_pred eCCCCCcccccccCCCcccccccccC-CCeEEEEeccc-----Ccee----------------eeeeCCEEEEecccCCC
Q 012409 247 PQRLGNLESQVLCIEPKPVGLTEVKV-GEEYEIIVTNV-----AGLY----------------RYRLGDVVKVMGFHNST 304 (464)
Q Consensus 247 p~~~~~~~~~~~~~~~~~l~l~eve~-G~~YelVvTt~-----~GLy----------------RYr~GDvV~v~gf~~~~ 304 (464)
+.+ + ++ +|.. |+.+||+++.. .|+| .|++||++++. ..
T Consensus 457 d~~---~--------g~-----~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d----~d 516 (663)
T 1ry2_A 457 DPN---T--------GE-----ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKD----KD 516 (663)
T ss_dssp CSS---S--------TT-----CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEEC----TT
T ss_pred cCC---C--------CC-----cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEc----CC
Confidence 432 1 22 3556 89999999762 3443 29999999997 44
Q ss_pred cEEEEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCC-CCceEEEEEEecCCCC-----h---
Q 012409 305 PELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLST-DPGHYVIFWEVSGEVN-----D--- 375 (464)
Q Consensus 305 P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~-~p~hY~~~~E~~~~~~-----~--- 375 (464)
-.+.|+||.++++++.|+++...+|++++.+. . .|.+..++.-... ....-+.|+.+..... .
T Consensus 517 G~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p--~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~ 588 (663)
T 1ry2_A 517 GYIWILGRVDDVVNVSGHRLSTAEIEAAIIED------P--IVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL 588 (663)
T ss_dssp CCEEECSCTTSCBCSSSCCBCHHHHHHHHHSS------T--TEEEEEEECCCCCTTSCCCEEEEEEC------------C
T ss_pred CCEEEEeecCCEEEECCEEcCHHHHHHHHHhC------C--CcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhH
Confidence 67999999999999999999999999999732 1 3555555432111 1112345666543211 1
Q ss_pred -HHHHHHHHHHHhhccCcchHhhhhcCccCCeEEEEec------cchHHHHHHHHhcCCCCCCCCCcCcccCCCCHhHHH
Q 012409 376 -EVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVL------KGTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQ 448 (464)
Q Consensus 376 -~~l~~~~~~ld~~l~n~~Y~~~R~~g~l~pl~v~~v~------~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~ 448 (464)
+..+++.+.+.+.+ +.| ..|-+|.+|+ .|-.+|-.=..+..+. ..+.+.+..+. |++.++
T Consensus 589 ~~l~~~l~~~l~~~L--~~~--------~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~-~~~~~~~~~l~--~p~~~~ 655 (663)
T 1ry2_A 589 QDIKKHLVFTVRKDI--GPF--------AAPKLIILVDDLPKTRSGKIMRRILRKILAGE-SDQLGDVSTLS--NPGIVR 655 (663)
T ss_dssp CSHHHHHHHHHHHHT--CTT--------TSCSEEEECSCCCBCTTSCBCHHHHHHSCC----------------CCHHHH
T ss_pred HHHHHHHHHHHHHhC--CCC--------cCCeEEEEcCCCCCCCccCchHHHHHHHHcCC-CCCCCCccccc--CHHHHH
Confidence 12333333333321 112 3345555553 2322221111112221 12667778888 999998
Q ss_pred HHhc
Q 012409 449 ILCN 452 (464)
Q Consensus 449 ~l~~ 452 (464)
.+.+
T Consensus 656 ~~~~ 659 (663)
T 1ry2_A 656 HLID 659 (663)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 32
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=98.64 E-value=1.9e-07 Score=97.98 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=51.5
Q ss_pred CCCeEEEEeccc---Cceee------------eeeCCEEEEecccCCCcEEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 012409 272 VGEEYEIIVTNV---AGLYR------------YRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 272 ~G~~YelVvTt~---~GLyR------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
.|+.+||+|+.. .|+|+ |+|||++++. ....+.|+||.+++++++|++++..+|++++.+
T Consensus 345 ~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~----~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 345 KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEID----HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEEC----TTSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEc----CCCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 567899999553 56655 9999999997 557899999999999999999999999998874
No 33
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=98.55 E-value=1.4e-07 Score=107.38 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=71.7
Q ss_pred CCCCceeEEEeecC---hHHHHHHHHHHhCCCCeeccccccccceee--ecC--C--CC-CCcccceeeecCCCceeEEE
Q 012409 177 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIG--ANV--N--PS-LPPELATFAVLPNIGYFEFI 246 (464)
Q Consensus 177 WP~l~~i~~~~tG~---~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~g--i~~--~--~~-~~~~~~~~~l~~~~~ffEFi 246 (464)
.++|+ .+.+|+ .....+++++.+|+++++ +.||+||+... .+. . +. ..+...+ ..+|+. -.+.+
T Consensus 343 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G-~p~~~~-~~~i~ 416 (979)
T 3tsy_A 343 LSSIR---VVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACG-TVVRNA-EMKIV 416 (979)
T ss_dssp CTTCC---EEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCC-EECSSC-EEEEE
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcC-cccCCc-EEEEE
Confidence 35677 444443 234567788888899999 99999998532 221 0 10 0011112 233332 34555
Q ss_pred eCCCCCcccccccCCCcccccccccCCCeEEEEeccc---Cceee--------------eeeCCEEEEecccCCCcEEEE
Q 012409 247 PQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLYR--------------YRLGDVVKVMGFHNSTPELKF 309 (464)
Q Consensus 247 p~~~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~gf~~~~P~i~f 309 (464)
+++ ++ .+|..|+.+||+|+.. .|+|+ |||||++++. ..-.+.|
T Consensus 417 d~~-----------~~-----~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~----~dG~l~~ 476 (979)
T 3tsy_A 417 DPD-----------TG-----DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID----DDDELFI 476 (979)
T ss_dssp CTT-----------SC-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC----TTSCEEE
T ss_pred eCC-----------CC-----CCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEc----CCceEEE
Confidence 433 12 2466899999999743 56654 9999999997 4567999
Q ss_pred EeecCceeeeeeeecCHHHHHHHHHHH
Q 012409 310 ICRRNLLLTINIDKNTEKDLQLSVDEA 336 (464)
Q Consensus 310 ~gR~~~~l~v~GEkv~e~~v~~av~~a 336 (464)
+||.+++++++|+++...+|++++.+.
T Consensus 477 ~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 477 VDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp EEESCC---------------------
T ss_pred ecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 999999999999999999999999864
No 34
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=98.53 E-value=4.1e-07 Score=92.03 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=48.7
Q ss_pred cccCCCeEEEEeccc---CceeeeeeCCEEEEecccCCCcEEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 012409 269 EVKVGEEYEIIVTNV---AGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 336 (464)
Q Consensus 269 eve~G~~YelVvTt~---~GLyRYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~a 336 (464)
++..++.+|+++... .| -|+|||++++.. . .+.|+||.+++++++|+|++..+|++++...
T Consensus 209 ~~~~~~~Gel~~~g~~~~~g--~~~TGDlg~~d~----~-g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 272 (358)
T 4gs5_A 209 QYGVDERGCLHISGAVTNGQ--TVQTNDLVEIHG----N-AFQWIGRADNVINSGGVKIVLDQIDQRIAAV 272 (358)
T ss_dssp EEEECTTSEEEEESGGGTTC--CEEEEEEEEECS----S-EEEEEEEGGGEEEETTEEEEHHHHHHHHHHH
T ss_pred EEEecCcCceEEecccccCc--ceecCCcccccc----C-ceEEcccccCeEEECCEEECHHHHHHHHHHh
Confidence 355677788888532 33 378999999873 1 3789999999999999999999999988754
No 35
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=98.51 E-value=5.6e-07 Score=95.62 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=53.8
Q ss_pred cccCCCeEEEEeccc---Cceee-------------eeeCCEEEEecccCCCcEEEEEeecCceeeeeeeecCHHHHHHH
Q 012409 269 EVKVGEEYEIIVTNV---AGLYR-------------YRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLS 332 (464)
Q Consensus 269 eve~G~~YelVvTt~---~GLyR-------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~GEkv~e~~v~~a 332 (464)
++..|+.+||+|... .|+|+ |+|||++++. .-.+.|+||.+++++++|++++..+|+++
T Consensus 405 ~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~~-----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 479 (576)
T 3gqw_A 405 PVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLL-----DGYLYVTGRIKDLIIIRGRNIWPQDIEYI 479 (576)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEEE-----TTEEEEEEETTTCEEETTEEECHHHHHHH
T ss_pred CCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEEE-----CCEEEEEecCcceEEECCEEECHHHHHHH
Confidence 367899999999653 56665 9999999873 25799999999999999999999999999
Q ss_pred HHHH
Q 012409 333 VDEA 336 (464)
Q Consensus 333 v~~a 336 (464)
+.+.
T Consensus 480 l~~~ 483 (576)
T 3gqw_A 480 AEQE 483 (576)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 8753
No 36
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.40 E-value=2.4e-06 Score=100.24 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=86.4
Q ss_pred CCCceeEEEeecC--hHHHHHHHHHHhCCCCeeccccccccceeeec---CCCC---CCcccceeeecCCCceeEEEeCC
Q 012409 178 PNAKYLSGIMTGS--MEHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPS---LPPELATFAVLPNIGYFEFIPQR 249 (464)
Q Consensus 178 P~l~~i~~~~tG~--~~~Y~~~l~~~~~~~~~~~~~y~aSEg~~gi~---~~~~---~~~~~~~~~l~~~~~ffEFip~~ 249 (464)
++|+ .++++|. ...-..++.+.+++++++ +.||.||+.+... .... ......| ..+++.. ...++.+
T Consensus 720 ~~lr--~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG-~p~~~~~-~~i~d~~ 794 (1304)
T 2vsq_A 720 KGLR--CILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIG-KPISNAS-VYILNEQ 794 (1304)
T ss_dssp HTCS--EEEEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCB-EECTTEE-EEEECTT
T ss_pred CCcc--EEEEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCc-eeeCCCE-EEEECCC
Confidence 4667 2334442 234556677778788898 9999999865321 1110 0000112 1233331 1222211
Q ss_pred CCCcccccccCCCcccccccccCCCeEEEEeccc---Ccee--------------------eeeeCCEEEEecccCCCcE
Q 012409 250 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV---AGLY--------------------RYRLGDVVKVMGFHNSTPE 306 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~---~GLy--------------------RYr~GDvV~v~gf~~~~P~ 306 (464)
. ..++.|+.+||+|... .|+| .|||||++++. ..-.
T Consensus 795 ------------~-----~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~----~dG~ 853 (1304)
T 2vsq_A 795 ------------S-----QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWL----PDGT 853 (1304)
T ss_dssp ------------S-----CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEEC----TTSC
T ss_pred ------------c-----CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEc----CCCe
Confidence 2 2366899999999643 3433 49999999987 5568
Q ss_pred EEEEeecCceeeeeeeecCHHHHHHHHHH
Q 012409 307 LKFICRRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 307 i~f~gR~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
++|+||.|++++++|+++...+|+.++.+
T Consensus 854 l~~~GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 854 IEYAGRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp EEEEEEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred EEEEcCCCCEEEECCEeeCHHHHHHHHHh
Confidence 99999999999999999999999999975
No 37
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=98.36 E-value=9.6e-07 Score=93.85 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=48.4
Q ss_pred CCeEEEEeccc---Cceee--------------eeeCCEEEEecccCCCcEEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 012409 273 GEEYEIIVTNV---AGLYR--------------YRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDE 335 (464)
Q Consensus 273 G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~gf~~~~P~i~f~gR~~~~l~v~GEkv~e~~v~~av~~ 335 (464)
|+.+||+|+.. .|+|. |||||++++. ..-.+.|+||.+++++++|++++..+|++++.+
T Consensus 381 ~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d----~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 456 (541)
T 1v25_A 381 KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD----EEGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456 (541)
T ss_dssp CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEEC----TTCCEEEEEESSCEEEETTEEEEHHHHHCC---
T ss_pred CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEc----CCceEEEeecccceeeeCCEEECHHHHHHHHHh
Confidence 36899999653 56653 9999999987 446799999999999999999999999999986
Q ss_pred H
Q 012409 336 A 336 (464)
Q Consensus 336 a 336 (464)
.
T Consensus 457 ~ 457 (541)
T 1v25_A 457 H 457 (541)
T ss_dssp -
T ss_pred C
Confidence 4
No 38
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=97.91 E-value=1.9e-05 Score=79.43 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=68.2
Q ss_pred CCCceeEEEeecC--hHHHHHHHH-HHhCCCCeeccccccccceeeecCCCCCCcccceeee-----cCCCceeEEEeCC
Q 012409 178 PNAKYLSGIMTGS--MEHYLKKLR-HYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAV-----LPNIGYFEFIPQR 249 (464)
Q Consensus 178 P~l~~i~~~~tG~--~~~Y~~~l~-~~~~~~~~~~~~y~aSEg~~gi~~~~~~~~~~~~~~l-----~~~~~ffEFip~~ 249 (464)
++++ .++.+|. ....+++++ +.+|+++++ +.||+||+..... .|+....+..+ .|+ ...+.++.+
T Consensus 231 ~~lr--~i~~gGe~l~~~~~~~~~~~~~p~~~v~-~~YG~TE~~~~~~---~~~~~~~G~~~~~~~~~~~-~~v~ivD~~ 303 (369)
T 3hgu_A 231 QSLA--QITLGGTELNLDEIKFIASEILPDCEFS-ASYGSTSALGVSR---SLLITSESQQVIYDSFSPF-ITYDVVDSI 303 (369)
T ss_dssp HHCS--EEEEESSCCCHHHHHHHHHHTCTTSEEE-EEEEEGGGTEEEE---ECCBCTTCSSCEEECCTTT-EEEEEECTT
T ss_pred CCee--EEEECCccCCHHHHHHHHHHhCCCcEEE-cccCchhhhccee---ccccccCCCcccccCCCCC-eEEEEECCC
Confidence 3556 2334442 446678888 888899999 9999999743221 22211123322 233 445666543
Q ss_pred CCCcccccccCCCcccccccccCCCeEEEEecccC---ceeeeeeCCEEEEecccCCC-----cEEEEEeecCceeeeee
Q 012409 250 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA---GLYRYRLGDVVKVMGFHNST-----PELKFICRRNLLLTINI 321 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~l~l~eve~G~~YelVvTt~~---GLyRYr~GDvV~v~gf~~~~-----P~i~f~gR~~~~l~v~G 321 (464)
++ ..|+.|+.+||+||++. -|.||++||+.+.....+.- --++.++|.++...|.|
T Consensus 304 -----------~g-----~~vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 304 -----------TA-----QTVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp -----------TC-----SBCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred -----------CC-----cCCCCCCceEEEEEEcCcccccccccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 12 23669999999999863 29999999999877543322 13445556554444433
No 39
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.12 E-value=0.0015 Score=54.31 Aligned_cols=88 Identities=9% Similarity=0.123 Sum_probs=56.2
Q ss_pred ecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCceEE-eEEEeecCCCCCceEEEEEEecCC--CChHHHHHHHHHHHhh
Q 012409 312 RRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVV-DFTSHVDLSTDPGHYVIFWEVSGE--VNDEVLKECCNCLDRS 388 (464)
Q Consensus 312 R~~~~l~v~GEkv~e~~v~~av~~a~~~l~~~~~~l~-~f~~~~~~~~~p~hY~~~~E~~~~--~~~~~l~~~~~~ld~~ 388 (464)
|.|||++++|.++++.+|++++.+. .+ +. .+.+..+.......-.++++.... .+...++++++.+.+.
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~--v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~ 73 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KE--LGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQ 73 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TT--EEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CC--cccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHH
Confidence 8999999999999999999998743 12 32 333333321122234577777432 3444566676666665
Q ss_pred ccCcchHhhhh-cCccCCeEEEEeccchHH
Q 012409 389 FVDAGYVSARK-VNAIGPLELRVVLKGTFQ 417 (464)
Q Consensus 389 l~n~~Y~~~R~-~g~l~pl~v~~v~~GtF~ 417 (464)
+ +. .| + ++.|.+|++|++.
T Consensus 74 l--------~~~~g-v-~~~v~~v~~~~lP 93 (109)
T 3lax_A 74 L--------KDEIL-V-TPRVKLVPKGALP 93 (109)
T ss_dssp H--------HHHHS-S-CCEEEEECTTCSC
T ss_pred H--------HHHhC-C-ccceEEEcCCeec
Confidence 3 22 23 4 4579999999976
No 40
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=97.06 E-value=0.0017 Score=54.09 Aligned_cols=88 Identities=10% Similarity=0.201 Sum_probs=55.8
Q ss_pred eecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCceEE-eEEEeecCCCCCceEEEEEEecCCC---ChHHHHHHHHHHH
Q 012409 311 CRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVV-DFTSHVDLSTDPGHYVIFWEVSGEV---NDEVLKECCNCLD 386 (464)
Q Consensus 311 gR~~~~l~v~GEkv~e~~v~~av~~a~~~l~~~~~~l~-~f~~~~~~~~~p~hY~~~~E~~~~~---~~~~l~~~~~~ld 386 (464)
||.+||++++|.++++.+|++++.+. . .+. .|.+..+.....-.-++++|+ ... +....+++...+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-------~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~ 71 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-------ELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREIT 71 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-------TEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-------CcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHH
Confidence 79999999999999999999999853 1 232 454433321111245688888 321 1223445555555
Q ss_pred hhccCcchHhhh-hcCccCCeEEEEeccchHH
Q 012409 387 RSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQ 417 (464)
Q Consensus 387 ~~l~n~~Y~~~R-~~g~l~pl~v~~v~~GtF~ 417 (464)
+.+ + ..| +.+ +|.+|++|++.
T Consensus 72 ~~l--------~~~~~-~~~-~v~~v~~~~lP 93 (109)
T 3gxs_A 72 RQL--------KDEIL-VTP-RVKLVPKGALP 93 (109)
T ss_dssp HHH--------HHHHS-SCC-EEEEECTTCSC
T ss_pred HHH--------HHhhC-Cce-EEEEECCCCcc
Confidence 543 2 234 554 99999999866
No 41
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=96.24 E-value=0.014 Score=59.95 Aligned_cols=39 Identities=31% Similarity=0.306 Sum_probs=29.4
Q ss_pred cccCCCeEEEEecc---cCcee-------------------------eeeeCCEEEEecccCCCcEEEEEee
Q 012409 269 EVKVGEEYEIIVTN---VAGLY-------------------------RYRLGDVVKVMGFHNSTPELKFICR 312 (464)
Q Consensus 269 eve~G~~YelVvTt---~~GLy-------------------------RYr~GDvV~v~gf~~~~P~i~f~gR 312 (464)
+++.|+.+||+|.. ..|+| -|||||+.++. .-.+.|+||
T Consensus 414 ~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-----dG~l~~~GR 480 (480)
T 3t5a_A 414 ECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----DGKMFIIGR 480 (480)
T ss_dssp ECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-----TTEEEECC-
T ss_pred CCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-----CCEEEEeCC
Confidence 46789999999954 35665 49999999874 257888887
No 42
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=54.07 E-value=25 Score=27.00 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=36.4
Q ss_pred eecCHHHHHHHHHHHHHHhhh-cCceEEeEEEeecCCCCCceEEEEEEe
Q 012409 322 DKNTEKDLQLSVDEAAQLLAE-EKQEVVDFTSHVDLSTDPGHYVIFWEV 369 (464)
Q Consensus 322 Ekv~e~~v~~av~~a~~~l~~-~~~~l~~f~~~~~~~~~p~hY~~~~E~ 369 (464)
.+-.|+.+++||.+|.++|+. .++++.+.....+. +.-.||.+-+.+
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV 62 (72)
T 3onr_A 15 PTSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEV 62 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 456799999999999998865 37778888887764 355699987765
No 43
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=53.10 E-value=29 Score=26.36 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=36.0
Q ss_pred eecCHHHHHHHHHHHHHHhhh-cCceEEeEEEeecCCCCCceEEEEEEec
Q 012409 322 DKNTEKDLQLSVDEAAQLLAE-EKQEVVDFTSHVDLSTDPGHYVIFWEVS 370 (464)
Q Consensus 322 Ekv~e~~v~~av~~a~~~l~~-~~~~l~~f~~~~~~~~~p~hY~~~~E~~ 370 (464)
.+-.|+.+++||.+|.++|+. .++++.+.....+.. .-.||.+-+.+.
T Consensus 13 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lKV~ 61 (68)
T 2cc6_A 13 EESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGAV-EERTYQTEVQVA 61 (68)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTTS-SSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEE
Confidence 455799999999999998864 367777887776543 446999877653
No 44
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=43.07 E-value=29 Score=26.45 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=34.8
Q ss_pred eecCHHHHHHHHHHHHHHhhh-cCceEEeEEEeecCCCCCceEEEEEEe
Q 012409 322 DKNTEKDLQLSVDEAAQLLAE-EKQEVVDFTSHVDLSTDPGHYVIFWEV 369 (464)
Q Consensus 322 Ekv~e~~v~~av~~a~~~l~~-~~~~l~~f~~~~~~~~~p~hY~~~~E~ 369 (464)
.+-.|+.+++||.+|.++|+. .++++.+.....+.. .-.||.+-+.+
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lkV 62 (69)
T 2ux9_A 15 EEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEA-GVKEYQVVLEV 62 (69)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEE
Confidence 455799999999999998864 367777887776543 44689877765
No 45
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=42.44 E-value=30 Score=26.36 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=34.6
Q ss_pred eecCHHHHHHHHHHHHHHhhh-cCceEEeEEEeecCCCCCceEEEEEEe
Q 012409 322 DKNTEKDLQLSVDEAAQLLAE-EKQEVVDFTSHVDLSTDPGHYVIFWEV 369 (464)
Q Consensus 322 Ekv~e~~v~~av~~a~~~l~~-~~~~l~~f~~~~~~~~~p~hY~~~~E~ 369 (464)
.+-.|+.+++||.+|.++|+. .++++.+.....+.. .-.||.+-+.+
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lkv 62 (69)
T 2yiz_A 15 PDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDG-AVAHFQVTMKV 62 (69)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEE
Confidence 355789999999999998864 367777887776543 44689877765
No 46
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=42.26 E-value=29 Score=26.59 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=35.4
Q ss_pred eecCHHHHHHHHHHHHHHhhh-cCceEEeEEEeecCCCCCceEEEEEEec
Q 012409 322 DKNTEKDLQLSVDEAAQLLAE-EKQEVVDFTSHVDLSTDPGHYVIFWEVS 370 (464)
Q Consensus 322 Ekv~e~~v~~av~~a~~~l~~-~~~~l~~f~~~~~~~~~p~hY~~~~E~~ 370 (464)
.+-.|+.+++||.+|.++|+. .++++.+.....+.. .-.||.+-+.+.
T Consensus 16 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~r~~v~dg-ki~~yqV~lKV~ 64 (72)
T 2vxa_A 16 PNGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEGG-RVNHWQVTVKVG 64 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhhccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEE
Confidence 455799999999999998864 367777887776543 446898777653
No 47
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=39.84 E-value=1.5e+02 Score=28.41 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEEEecCCCChHHHHHHHHHHHh
Q 012409 326 EKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDR 387 (464)
Q Consensus 326 e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~E~~~~~~~~~l~~~~~~ld~ 387 (464)
+-.+.+++. .++..|+.++..-+.+- ...++.|.+|+++++..+++.+++..+.|++
T Consensus 211 pGaL~~~L~----~Fa~~gINLtkIESRP~-~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~ 267 (283)
T 2qmx_A 211 QGSLFRALA----TFALRGIDLTKIESRPS-RKKAFEYLFYADFIGHREDQNVHNALENLRE 267 (283)
T ss_dssp TTHHHHHHH----HHHTTTCCEEEEEEEEC-SSSTTEEEEEEEEESCTTSHHHHHHHHHHHT
T ss_pred CchHHHHHH----HHHHcCCCeeEEEeeEc-CCCCcceEEEEEEecCCCcHHHHHHHHHHHH
Confidence 555555555 44467888887666543 3467899999999876554444444444443
No 48
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=33.41 E-value=1.8e+02 Score=27.68 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=49.6
Q ss_pred EecccCCCcEEEEEeecC-----ceeeeeee---ecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEEE
Q 012409 297 VMGFHNSTPELKFICRRN-----LLLTINID---KNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWE 368 (464)
Q Consensus 297 v~gf~~~~P~i~f~gR~~-----~~l~v~GE---kv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~E 368 (464)
|.+..++.-||-+++|.. ...-++.- +-.+-.+.+++. .++..|+.++..-+.+- ...++.|.+|++
T Consensus 163 I~D~~~N~TRF~vl~~~~~~~~~ktsl~f~~~~~~~~pGaL~~~L~----~Fa~~gINLtkIESRP~-~~~~~~Y~FfiD 237 (267)
T 2qmw_A 163 IEDYPHNVTRFLVIKNQQQFDQNATSLMFLITPMHDKPGLLASVLN----TFALFNINLSWIESRPL-KTQLGMYRFFVQ 237 (267)
T ss_dssp CCSCSCCEEEEEEEESCCCCCSSCSEEEEEEEESSCCTTHHHHHHH----HHHTTTCCEEEEEEEEC-SSSTTCEEEEEE
T ss_pred ccCCCCCceEEEEEecCCCCCCCeEEEEEEcCCCCCCcChHHHHHH----HHHHcCCCeeEEEEeec-CCCCccEEEEEE
Confidence 444555677888888732 12222222 334555555555 44467888887666543 446789999999
Q ss_pred ecCCCChHHHHHHHHHHHh
Q 012409 369 VSGEVNDEVLKECCNCLDR 387 (464)
Q Consensus 369 ~~~~~~~~~l~~~~~~ld~ 387 (464)
++ ..+++.+++..+.|++
T Consensus 238 ~e-~~~d~~v~~aL~~L~~ 255 (267)
T 2qmw_A 238 AD-SAITTDIKKVIAILET 255 (267)
T ss_dssp ES-CCSCHHHHHHHHHHHH
T ss_pred Ee-cCCcHHHHHHHHHHHH
Confidence 98 5544444444444443
No 49
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=32.25 E-value=1.8e+02 Score=28.30 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=49.3
Q ss_pred ecccCCCcEEEEEeecC--------ceeee-eee-ecCHHHHHHHHHHHHHHhhhcCceEEeEEEeecCCCCCceEEEEE
Q 012409 298 MGFHNSTPELKFICRRN--------LLLTI-NID-KNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFW 367 (464)
Q Consensus 298 ~gf~~~~P~i~f~gR~~--------~~l~v-~GE-kv~e~~v~~av~~a~~~l~~~~~~l~~f~~~~~~~~~p~hY~~~~ 367 (464)
....++.-||-+++|.. +-.++ +.- +-.+-.+.+++.. ++..|+.++-.-+.+ ....++.|.+|+
T Consensus 175 ~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~----Fa~~gINLtkIESRP-~~~~~~~Y~Ffi 249 (313)
T 3mwb_A 175 GDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQ----FASRGVNLSRIESRP-TGQYLGHYFFSI 249 (313)
T ss_dssp CSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHH----HHTTTCCEEEEEEEE-CSSSTTSEEEEE
T ss_pred cCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHH----HHHCCccEEEEEEee-cCCCCccEEEEE
Confidence 34445667777777754 11222 222 1234555555554 445788888666653 344778999999
Q ss_pred EecCCCChHHHHHHHHHHHh
Q 012409 368 EVSGEVNDEVLKECCNCLDR 387 (464)
Q Consensus 368 E~~~~~~~~~l~~~~~~ld~ 387 (464)
++.+..+++.+++..+.|++
T Consensus 250 D~eg~~~d~~v~~aL~~L~~ 269 (313)
T 3mwb_A 250 DADGHATDSRVADALAGLHR 269 (313)
T ss_dssp EEESCTTSHHHHHHHHHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHH
Confidence 99775554444444445544
No 50
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=27.28 E-value=62 Score=28.14 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=34.8
Q ss_pred cccccccCCCeEEEEeccc-Cceeeee----------eCCEEEEecc---cCCCcEEEEEeecCceeeee
Q 012409 265 VGLTEVKVGEEYEIIVTNV-AGLYRYR----------LGDVVKVMGF---HNSTPELKFICRRNLLLTIN 320 (464)
Q Consensus 265 l~l~eve~G~~YelVvTt~-~GLyRYr----------~GDvV~v~gf---~~~~P~i~f~gR~~~~l~v~ 320 (464)
++..||..|++-|-++-+. +=||||. +|++ ++--- .+++-+.+++.|.+..+.|.
T Consensus 14 l~~vev~tGEE~E~~l~~~raKL~~fd~~~~~WkERG~G~l-kil~~k~~~~~t~k~RlvmR~d~~~kv~ 82 (150)
T 2crf_A 14 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLL-RLNDMASTDDGTLQSRLVMRTQGSLRLI 82 (150)
T ss_dssp SSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEE-EEEEEECSSSCSEEEEEEEEESSSCCEE
T ss_pred cccccccCCCcCeEEEEEEEeEEEEEcCCCCCcccceeEEE-EEEeccccCCCCccEEEEEEEcCcceEE
Confidence 3445677898888777555 5599996 3332 33311 12345899999998665554
Done!