BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012410
(464 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B7FF09|WDY_DROWI WD repeat-containing protein on Y chromosome OS=Drosophila
willistoni GN=WDY PE=4 SV=1
Length = 1089
Score = 35.8 bits (81), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 13/167 (7%)
Query: 308 AFIFLYENQLFLTFRNRTVAVWNFRGE-LVTSFED--HLLWHPDCNTNNIY-------IT 357
F+ EN+++ + + VWN + L+ ++ D L+ H + + Y I
Sbjct: 380 VFVQPEENKVYSVDYQKIIKVWNLQEHTLLQTYGDLVRLIHHTETDLTYYYHSHLRELIV 439
Query: 358 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417
+ + LI C +G+ + VS +L + N C + TG+
Sbjct: 440 AGRKLISIKCCPRVRVDLTDGNTHAAPVSVVLYNRLFR--NIVTCGLDSYIIVWDPWTGR 497
Query: 418 SKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVWS 463
K + KS + + GE ++ +IT+ +D + TG R G + +W+
Sbjct: 498 RKIIMKSCHTKMIYGETIDIEITAACFDPLEQFLLTGARDGSLKIWN 544
>sp|B7FF12|WDY_DROYA WD repeat-containing protein on Y chromosome OS=Drosophila yakuba
GN=WDY PE=2 SV=2
Length = 1068
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 308 AFIFLYENQLFLTFRNRTVAVWNFRGE-LVTSFED--HLLWHPDCNTNNIYITSDQDLII 364
F+ EN+++ + + VW+ L+ ++ D L+ H + + Y + Q+L++
Sbjct: 373 VFVQPEENKVYSVDYQKIIKVWDLHEHTLLQTYGDLVRLIHHSETDMTYYYHSHLQELVV 432
Query: 365 S-------YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417
+ C +G+ + VS +L + N +C + TG+
Sbjct: 433 AGRKLISIKCCPRVRVDLADGNTHAAPVSVVLYNRLFR--NVVSCGLDSYIIVWDPWTGR 490
Query: 418 SKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVWS 463
K + KS + + GE ++ +IT+ +D + TG R G + +W+
Sbjct: 491 RKIIMKSCHTKMIYGEIIDIEITAACFDPLEQFLLTGARDGSLKIWN 537
>sp|B0FXQ5|WDY_DROAN WD repeat-containing protein on Y chromosome OS=Drosophila
ananassae GN=WDY PE=2 SV=2
Length = 1064
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 13/167 (7%)
Query: 308 AFIFLYENQLFLTFRNRTVAVWNFRGE-LVTSFED--HLLWHPDCNTNNIY-------IT 357
F+ EN+++ + + VW+ + L+ ++ D L+ H + + Y +
Sbjct: 368 VFVQPEENKVYSVDYQKIIKVWDLQEHTLLQTYGDLVRLIHHSETDLTYYYHSHLRELVV 427
Query: 358 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417
+ + LI C +G+ + VS +L + N C + TG+
Sbjct: 428 AGRKLISIKCCPRVRVDLTDGNTHAAPVSVVLYNRLFR--NIVTCGLDSYIIVWDPWTGR 485
Query: 418 SKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVWS 463
K + KS + + GE ++ +IT+ +D + TG R G + +W+
Sbjct: 486 RKIIMKSCHTKMIYGEIIDIEITAACFDPLEQFLLTGARDGSLKIWN 532
>sp|B4F7L9|WDY_DROME WD repeat-containing protein on Y chromosome OS=Drosophila
melanogaster GN=WDY PE=2 SV=2
Length = 1069
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 13/167 (7%)
Query: 308 AFIFLYENQLFLTFRNRTVAVWNFRGE-LVTSFED--HLLWHPDCNTNNIY-------IT 357
F+ EN+++ + + VW+ L+ ++ D L+ H + + Y +
Sbjct: 373 VFVQPEENKVYSVDYQKIIKVWDLHEHTLLQTYGDLVRLIHHSETDLTYYYHSHLRELVV 432
Query: 358 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417
+ + LI C +G+ + VS +L + N +C + TG+
Sbjct: 433 AGRKLISIKCCPRVRVDLTDGNTHAAPVSVVLYNRLFR--NIVSCGLDSYIIVWDPWTGR 490
Query: 418 SKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVWS 463
K + KS + + GE ++ +IT+ +D + TG R G + +W+
Sbjct: 491 RKIIMKSCHTKMIYGEIIDIEITAACFDPLEQFLLTGARDGSLKIWN 537
>sp|Q8A5W4|SYK_BACTN Lysine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=lysS
PE=3 SV=1
Length = 576
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 28/141 (19%)
Query: 190 FVEFDDVNGKVLTYSAQDSI-------------YKVFDLKNY---------TMLYSISDK 227
F+E D G++ Y +D I ++ DL ++ T + IS
Sbjct: 72 FIELQDSKGRIQVYITRDDICPGEDKELYNSVFKRLLDLGDFVGIEGFVFRTQMGEIS-I 130
Query: 228 HVQEIKIRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENL 285
H +++ + + S PL I+ +DG F L +R + VD + NE + E
Sbjct: 131 HAKKLTVLAKSIKPLPIVKYKDGVAYDSFEDPELRYRQRYVDLV--VNEGIKETFEKRAT 188
Query: 286 QILDVRNAELMEVSRTEFMTP 306
+ +RNA L E TE TP
Sbjct: 189 VVRTLRNA-LDEAGYTEVETP 208
>sp|B7FF06|WDY_DROGR WD repeat-containing protein on Y chromosome OS=Drosophila
grimshawi GN=WDY PE=4 SV=1
Length = 1171
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 307 SAFIFLYENQLFLTFRNRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITS 358
+ F+ EN+++ ++ + VW+ + GELV ++ H + + Y +
Sbjct: 381 AVFVQPEENKVYSVDYHKVIKVWDLQEHTLLQTFGELV-----RIIHHSETDIKYYYHSH 435
Query: 359 DQDLIIS-------YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411
+DL+++ C +G+ + VS +L + N C +
Sbjct: 436 LRDLLVAGRKLIQIKCCPRVRVDLTDGNTHAAPVSVVLYNRLFR--NIVTCGLDSYIIVW 493
Query: 412 SSSTGKSKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVWS 463
TG+ K + K+ + + GE ++ +IT+ +D + TG R G + +W+
Sbjct: 494 DPWTGRRKIIMKNCHTKMIYGEIIDIEITAACFDPLEQFLLTGARDGSLKIWN 546
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,471,932
Number of Sequences: 539616
Number of extensions: 6792427
Number of successful extensions: 18378
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 18366
Number of HSP's gapped (non-prelim): 37
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)