Query 012410
Match_columns 464
No_of_seqs 242 out of 509
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.2E-48 2.6E-53 393.1 27.9 310 89-463 116-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2.9E-45 6.2E-50 368.7 24.0 276 120-463 107-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-45 2.7E-50 374.7 19.9 278 121-463 167-458 (459)
4 KOG0295 WD40 repeat-containing 100.0 3.7E-42 7.9E-47 344.6 23.2 271 126-463 105-404 (406)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-41 2.8E-46 345.5 21.3 265 90-387 177-458 (459)
6 KOG0279 G protein beta subunit 100.0 3.9E-39 8.4E-44 314.4 32.1 285 120-463 7-311 (315)
7 cd00200 WD40 WD40 domain, foun 100.0 8.7E-37 1.9E-41 281.3 33.8 274 122-463 3-289 (289)
8 PLN00181 protein SPA1-RELATED; 100.0 6.8E-37 1.5E-41 342.3 39.5 308 107-464 457-792 (793)
9 KOG0266 WD40 repeat-containing 100.0 1.6E-36 3.4E-41 320.8 31.9 279 122-463 152-452 (456)
10 KOG0286 G-protein beta subunit 100.0 4.1E-36 8.8E-41 294.8 32.0 278 122-463 49-343 (343)
11 KOG0295 WD40 repeat-containing 100.0 1.2E-36 2.7E-41 304.9 23.3 287 67-387 89-404 (406)
12 KOG0263 Transcription initiati 100.0 2.3E-36 5E-41 324.6 22.2 223 190-464 383-648 (707)
13 KOG0266 WD40 repeat-containing 100.0 1.4E-35 3.1E-40 313.5 27.8 228 190-464 164-408 (456)
14 KOG0319 WD40-repeat-containing 100.0 6.6E-36 1.4E-40 319.2 24.5 297 98-463 293-617 (775)
15 KOG0319 WD40-repeat-containing 100.0 5.5E-35 1.2E-39 312.1 26.1 304 96-463 115-575 (775)
16 KOG0274 Cdc4 and related F-box 100.0 2.7E-34 5.8E-39 309.1 27.6 263 127-464 206-481 (537)
17 KOG0315 G-protein beta subunit 100.0 8.5E-34 1.9E-38 273.8 27.2 271 99-402 11-301 (311)
18 KOG0291 WD40-repeat-containing 100.0 3.4E-33 7.4E-38 298.8 34.6 319 98-463 277-610 (893)
19 KOG0279 G protein beta subunit 100.0 5.9E-33 1.3E-37 271.2 27.7 262 98-389 28-313 (315)
20 KOG0281 Beta-TrCP (transducin 100.0 1.6E-35 3.4E-40 295.9 9.7 217 186-464 198-427 (499)
21 KOG0291 WD40-repeat-containing 100.0 5.5E-32 1.2E-36 289.6 36.3 383 54-463 103-548 (893)
22 KOG0263 Transcription initiati 100.0 2.5E-33 5.5E-38 301.3 25.9 237 130-394 379-654 (707)
23 KOG0281 Beta-TrCP (transducin 100.0 7.1E-35 1.5E-39 291.2 12.3 256 130-463 198-475 (499)
24 KOG0285 Pleiotropic regulator 100.0 3.5E-33 7.6E-38 279.8 24.0 282 122-463 145-437 (460)
25 KOG0286 G-protein beta subunit 100.0 2.2E-32 4.8E-37 268.6 27.7 227 186-463 56-301 (343)
26 KOG0265 U5 snRNP-specific prot 100.0 1.4E-32 3.1E-37 270.6 26.3 277 120-461 39-334 (338)
27 KOG0273 Beta-transducin family 100.0 1.5E-32 3.3E-37 282.3 27.5 272 124-463 174-480 (524)
28 KOG0273 Beta-transducin family 100.0 3.2E-32 7E-37 279.9 29.2 295 100-463 193-521 (524)
29 cd00200 WD40 WD40 domain, foun 100.0 3.2E-31 6.9E-36 244.2 33.0 266 89-387 10-289 (289)
30 KOG0274 Cdc4 and related F-box 100.0 9.7E-33 2.1E-37 297.1 25.2 268 94-401 214-494 (537)
31 KOG0315 G-protein beta subunit 100.0 3.6E-32 7.9E-37 262.6 26.5 250 151-464 16-287 (311)
32 PLN00181 protein SPA1-RELATED; 100.0 1.6E-31 3.4E-36 299.2 32.5 224 187-463 485-736 (793)
33 KOG0645 WD40 repeat protein [G 100.0 6.6E-31 1.4E-35 256.1 29.9 281 120-464 6-310 (312)
34 KOG0284 Polyadenylation factor 100.0 5.9E-33 1.3E-37 281.6 15.3 269 128-463 95-378 (464)
35 KOG0276 Vesicle coat complex C 100.0 4.9E-32 1.1E-36 285.5 21.6 223 190-464 18-256 (794)
36 KOG0276 Vesicle coat complex C 100.0 1.7E-31 3.6E-36 281.5 24.5 269 128-461 12-295 (794)
37 KOG0292 Vesicle coat complex C 100.0 2.6E-31 5.6E-36 287.7 25.5 267 127-459 7-316 (1202)
38 KOG0285 Pleiotropic regulator 100.0 1.1E-31 2.4E-36 269.1 19.6 227 183-463 149-387 (460)
39 PTZ00421 coronin; Provisional 100.0 2.1E-30 4.5E-35 277.1 30.4 233 161-464 52-289 (493)
40 KOG0313 Microtubule binding pr 100.0 6.3E-30 1.4E-34 257.8 27.6 353 29-463 35-416 (423)
41 KOG0282 mRNA splicing factor [ 100.0 4.1E-31 8.9E-36 272.4 16.6 283 116-463 202-503 (503)
42 KOG0292 Vesicle coat complex C 100.0 1.2E-30 2.7E-35 282.5 19.8 223 190-464 14-279 (1202)
43 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.3E-27 2.9E-32 229.3 35.8 269 98-401 1-291 (300)
44 KOG0265 U5 snRNP-specific prot 100.0 1.2E-29 2.6E-34 250.0 21.4 224 190-463 52-294 (338)
45 KOG0288 WD40 repeat protein Ti 100.0 9.1E-30 2E-34 258.7 18.2 275 127-463 173-459 (459)
46 KOG0293 WD40 repeat-containing 100.0 2.4E-29 5.3E-34 255.7 20.9 277 121-464 217-512 (519)
47 KOG0645 WD40 repeat protein [G 100.0 1.6E-28 3.5E-33 239.4 25.1 193 190-463 19-223 (312)
48 KOG0306 WD40-repeat-containing 100.0 2.2E-28 4.8E-33 262.0 28.5 287 105-463 341-662 (888)
49 KOG0318 WD40 repeat stress pro 100.0 8.3E-28 1.8E-32 250.0 31.4 298 100-464 162-559 (603)
50 KOG0301 Phospholipase A2-activ 100.0 9E-29 2E-33 263.4 24.8 271 119-463 5-286 (745)
51 KOG0643 Translation initiation 100.0 1.1E-28 2.4E-33 240.3 21.1 280 126-461 7-313 (327)
52 KOG0316 Conserved WD40 repeat- 100.0 1.4E-28 3.1E-33 236.3 20.4 225 186-464 18-256 (307)
53 KOG0316 Conserved WD40 repeat- 100.0 5.6E-28 1.2E-32 232.3 23.4 275 119-462 8-296 (307)
54 KOG0275 Conserved WD40 repeat- 100.0 5.9E-29 1.3E-33 247.2 16.7 347 54-463 108-507 (508)
55 KOG0296 Angio-associated migra 100.0 3.1E-27 6.7E-32 237.5 27.9 278 118-463 54-396 (399)
56 PTZ00420 coronin; Provisional 100.0 3.9E-27 8.5E-32 255.0 30.6 220 203-463 49-291 (568)
57 KOG0278 Serine/threonine kinas 100.0 1.1E-28 2.3E-33 238.8 16.3 270 126-463 11-295 (334)
58 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 3.8E-26 8.3E-31 219.2 33.6 250 161-464 11-278 (300)
59 KOG0275 Conserved WD40 repeat- 100.0 1.1E-27 2.4E-32 238.2 17.3 229 186-462 214-464 (508)
60 KOG0284 Polyadenylation factor 100.0 4.2E-28 9.1E-33 246.4 14.1 257 98-387 108-378 (464)
61 PTZ00420 coronin; Provisional 100.0 9.8E-26 2.1E-30 244.1 33.1 243 97-400 37-303 (568)
62 PTZ00421 coronin; Provisional 99.9 2.9E-26 6.4E-31 245.2 26.5 203 190-464 25-244 (493)
63 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-25 2.8E-30 222.5 27.4 227 186-464 15-261 (311)
64 KOG0301 Phospholipase A2-activ 99.9 7.1E-27 1.5E-31 249.0 18.9 214 190-463 19-247 (745)
65 KOG0308 Conserved WD40 repeat- 99.9 4.1E-27 9E-32 249.4 16.8 223 190-462 29-282 (735)
66 KOG0310 Conserved WD40 repeat- 99.9 3.2E-26 6.8E-31 236.6 22.6 264 128-460 26-304 (487)
67 KOG0313 Microtubule binding pr 99.9 4.6E-26 1E-30 230.0 22.6 245 161-464 83-375 (423)
68 KOG0288 WD40 repeat protein Ti 99.9 9.8E-27 2.1E-31 236.7 17.0 256 99-386 188-458 (459)
69 KOG0640 mRNA cleavage stimulat 99.9 5E-26 1.1E-30 225.4 20.4 282 120-463 104-424 (430)
70 KOG0318 WD40 repeat stress pro 99.9 1.6E-24 3.6E-29 225.6 32.3 275 122-463 52-348 (603)
71 KOG0282 mRNA splicing factor [ 99.9 7.2E-27 1.6E-31 241.2 13.2 226 190-463 219-460 (503)
72 KOG0277 Peroxisomal targeting 99.9 6.1E-26 1.3E-30 220.1 18.6 272 133-463 12-307 (311)
73 KOG0305 Anaphase promoting com 99.9 3.1E-25 6.7E-30 234.4 24.2 249 161-464 197-460 (484)
74 KOG0306 WD40-repeat-containing 99.9 8.3E-25 1.8E-29 234.7 25.9 272 82-388 367-663 (888)
75 KOG0296 Angio-associated migra 99.9 1.7E-24 3.7E-29 217.9 25.8 267 89-389 107-398 (399)
76 KOG1407 WD40 repeat protein [F 99.9 5E-24 1.1E-28 207.3 27.1 268 127-462 18-308 (313)
77 KOG0283 WD40 repeat-containing 99.9 6.1E-25 1.3E-29 238.2 22.2 231 185-464 267-575 (712)
78 KOG0299 U3 snoRNP-associated p 99.9 4.4E-24 9.5E-29 219.7 23.5 265 126-453 139-443 (479)
79 KOG0293 WD40 repeat-containing 99.9 2.8E-24 6.2E-29 218.9 21.5 265 89-388 225-512 (519)
80 KOG1539 WD repeat protein [Gen 99.9 1E-22 2.2E-27 220.7 32.2 311 98-464 214-647 (910)
81 KOG0300 WD40 repeat-containing 99.9 3.7E-24 8E-29 212.7 19.1 264 126-464 145-427 (481)
82 KOG0278 Serine/threonine kinas 99.9 3.2E-24 6.9E-29 207.9 16.3 259 98-393 29-301 (334)
83 KOG1446 Histone H3 (Lys4) meth 99.9 1.8E-22 4E-27 200.2 29.1 262 128-455 13-295 (311)
84 KOG0305 Anaphase promoting com 99.9 5.4E-23 1.2E-27 217.4 26.3 259 98-391 188-463 (484)
85 KOG0308 Conserved WD40 repeat- 99.9 4.6E-24 9.9E-29 226.4 17.5 250 93-398 31-295 (735)
86 KOG0267 Microtubule severing p 99.9 7.4E-25 1.6E-29 234.4 10.4 210 196-456 38-259 (825)
87 KOG0641 WD40 repeat protein [G 99.9 1.5E-21 3.4E-26 187.2 31.6 278 127-463 30-347 (350)
88 COG2319 FOG: WD40 repeat [Gene 99.9 4.9E-21 1.1E-25 182.4 35.2 273 126-464 62-358 (466)
89 KOG0310 Conserved WD40 repeat- 99.9 1.2E-23 2.6E-28 217.6 18.3 221 188-463 29-266 (487)
90 KOG0772 Uncharacterized conser 99.9 6.1E-23 1.3E-27 213.6 23.5 292 85-462 163-484 (641)
91 KOG1407 WD40 repeat protein [F 99.9 5.8E-23 1.3E-27 200.0 21.1 223 184-460 19-256 (313)
92 KOG0268 Sof1-like rRNA process 99.9 2E-23 4.3E-28 210.2 15.0 274 121-463 59-343 (433)
93 KOG0277 Peroxisomal targeting 99.9 1.4E-22 2.9E-27 196.9 19.2 252 105-387 35-307 (311)
94 KOG0973 Histone transcription 99.9 8.2E-22 1.8E-26 218.5 26.7 278 126-462 10-352 (942)
95 COG2319 FOG: WD40 repeat [Gene 99.9 1.5E-20 3.3E-25 179.1 31.0 225 187-464 67-313 (466)
96 KOG0300 WD40 repeat-containing 99.9 8.2E-23 1.8E-27 203.2 15.6 187 226-464 148-385 (481)
97 KOG1063 RNA polymerase II elon 99.9 1.1E-21 2.4E-26 209.5 24.7 301 102-463 163-646 (764)
98 KOG0772 Uncharacterized conser 99.9 1.4E-22 3.1E-27 210.8 16.3 219 189-455 171-429 (641)
99 KOG0283 WD40 repeat-containing 99.9 2E-21 4.3E-26 211.0 23.9 237 123-388 261-575 (712)
100 KOG1332 Vesicle coat complex C 99.9 6.2E-22 1.3E-26 191.5 17.3 222 191-463 17-284 (299)
101 KOG0289 mRNA splicing factor [ 99.9 8.6E-21 1.9E-25 194.6 25.7 267 131-463 221-504 (506)
102 KOG0643 Translation initiation 99.9 9.7E-21 2.1E-25 185.0 24.8 215 186-454 11-250 (327)
103 KOG0289 mRNA splicing factor [ 99.9 4.2E-21 9.1E-26 196.8 22.1 227 186-463 218-460 (506)
104 KOG0267 Microtubule severing p 99.9 5.2E-23 1.1E-27 220.4 7.7 212 197-464 3-225 (825)
105 KOG2048 WD40 repeat protein [G 99.9 4.5E-20 9.8E-25 196.9 29.4 270 122-461 19-315 (691)
106 KOG2096 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 187.1 23.8 292 109-463 62-400 (420)
107 KOG0299 U3 snoRNP-associated p 99.9 1.2E-20 2.6E-25 194.4 23.2 255 89-367 143-444 (479)
108 KOG0268 Sof1-like rRNA process 99.9 1.8E-21 3.9E-26 196.1 14.8 252 99-389 80-345 (433)
109 KOG4283 Transcription-coupled 99.9 1.6E-20 3.5E-25 185.6 20.8 262 185-463 43-363 (397)
110 KOG0264 Nucleosome remodeling 99.9 1.7E-20 3.7E-25 192.9 21.3 265 126-464 121-403 (422)
111 KOG0973 Histone transcription 99.8 4.4E-20 9.5E-25 204.9 21.6 238 188-463 16-310 (942)
112 KOG0294 WD40 repeat-containing 99.8 9.4E-20 2E-24 181.3 21.6 216 190-464 48-280 (362)
113 KOG0641 WD40 repeat protein [G 99.8 7E-19 1.5E-23 169.1 26.4 230 188-464 35-302 (350)
114 KOG0647 mRNA export protein (c 99.8 3.3E-19 7.1E-24 176.6 24.8 269 121-453 19-311 (347)
115 KOG1036 Mitotic spindle checkp 99.8 5.2E-19 1.1E-23 175.4 26.2 267 123-455 7-294 (323)
116 KOG1408 WD40 repeat protein [F 99.8 5E-19 1.1E-23 189.6 27.2 303 98-464 336-712 (1080)
117 KOG1274 WD40 repeat protein [G 99.8 2.4E-19 5.1E-24 196.4 24.6 229 190-463 18-260 (933)
118 PRK01742 tolB translocation pr 99.8 1.9E-19 4.1E-24 188.8 22.7 242 92-402 163-416 (429)
119 KOG0639 Transducin-like enhanc 99.8 1.5E-19 3.3E-24 188.0 19.5 273 121-463 413-702 (705)
120 KOG2055 WD40 repeat protein [G 99.8 6.9E-19 1.5E-23 181.7 24.2 285 118-464 200-511 (514)
121 KOG0647 mRNA export protein (c 99.8 4.6E-19 9.9E-24 175.6 22.0 230 190-463 32-279 (347)
122 KOG1539 WD repeat protein [Gen 99.8 1E-17 2.2E-22 182.2 33.6 350 82-464 152-605 (910)
123 PRK11028 6-phosphogluconolacto 99.8 1.1E-17 2.4E-22 168.0 30.5 271 104-463 8-302 (330)
124 KOG2445 Nuclear pore complex c 99.8 1.1E-18 2.4E-23 173.2 22.5 221 190-463 18-316 (361)
125 KOG0640 mRNA cleavage stimulat 99.8 5.3E-19 1.1E-23 175.8 18.6 268 89-387 113-424 (430)
126 KOG0646 WD40 repeat protein [G 99.8 1.9E-18 4E-23 178.6 21.4 244 199-463 8-305 (476)
127 KOG0303 Actin-binding protein 99.8 4.4E-18 9.5E-23 173.3 23.4 221 169-463 66-292 (472)
128 KOG2096 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 174.0 17.7 199 188-463 89-306 (420)
129 KOG1408 WD40 repeat protein [F 99.8 1.4E-18 3.1E-23 186.2 19.6 229 131-390 461-714 (1080)
130 KOG0269 WD40 repeat-containing 99.8 2.8E-19 6.1E-24 193.0 14.3 222 191-459 93-334 (839)
131 KOG0646 WD40 repeat protein [G 99.8 3.5E-18 7.7E-23 176.6 20.0 233 109-399 62-317 (476)
132 KOG0264 Nucleosome remodeling 99.8 1.8E-18 3.9E-23 178.0 17.8 202 191-464 130-346 (422)
133 KOG1063 RNA polymerase II elon 99.8 3E-17 6.4E-22 175.9 26.1 286 109-462 35-388 (764)
134 KOG1273 WD40 repeat protein [G 99.8 3.1E-17 6.6E-22 163.6 23.0 276 119-463 16-320 (405)
135 KOG2048 WD40 repeat protein [G 99.8 5.7E-17 1.2E-21 173.4 25.9 224 190-461 30-271 (691)
136 KOG1332 Vesicle coat complex C 99.8 4.8E-18 1E-22 164.7 15.0 239 122-387 4-284 (299)
137 KOG2445 Nuclear pore complex c 99.8 6.1E-17 1.3E-21 161.0 22.9 251 122-402 6-334 (361)
138 KOG0294 WD40 repeat-containing 99.8 3.4E-17 7.4E-22 163.1 20.0 234 80-332 35-281 (362)
139 KOG0302 Ribosome Assembly prot 99.8 1.5E-17 3.3E-22 168.6 17.3 201 197-464 164-377 (440)
140 KOG1274 WD40 repeat protein [G 99.8 3E-16 6.5E-21 172.3 27.9 262 127-458 11-293 (933)
141 KOG0321 WD40 repeat-containing 99.8 1.8E-17 3.8E-22 176.4 17.4 294 98-464 64-390 (720)
142 KOG1036 Mitotic spindle checkp 99.7 1.7E-16 3.8E-21 157.6 22.5 231 188-464 16-261 (323)
143 KOG2919 Guanine nucleotide-bin 99.7 1.2E-16 2.7E-21 159.7 20.5 270 128-456 48-361 (406)
144 KOG1007 WD repeat protein TSSC 99.7 2.3E-16 4.9E-21 156.0 21.9 288 116-461 50-357 (370)
145 KOG4328 WD40 protein [Function 99.7 1.4E-16 3.1E-21 164.6 20.8 282 126-464 183-494 (498)
146 KOG2106 Uncharacterized conser 99.7 3.6E-15 7.9E-20 155.7 31.3 300 90-463 156-475 (626)
147 KOG4283 Transcription-coupled 99.7 1.4E-16 3E-21 157.9 19.1 191 235-464 61-275 (397)
148 KOG0269 WD40 repeat-containing 99.7 1.1E-17 2.4E-22 180.8 12.2 179 237-464 107-295 (839)
149 KOG0270 WD40 repeat-containing 99.7 1.4E-16 3E-21 164.1 19.4 230 140-394 191-454 (463)
150 PRK01742 tolB translocation pr 99.7 5.9E-16 1.3E-20 162.6 24.7 206 161-463 184-399 (429)
151 KOG2919 Guanine nucleotide-bin 99.7 1.3E-16 2.8E-21 159.6 18.4 226 190-464 54-326 (406)
152 PRK03629 tolB translocation pr 99.7 1.6E-15 3.4E-20 159.7 26.4 247 92-402 158-418 (429)
153 KOG0270 WD40 repeat-containing 99.7 4E-16 8.6E-21 160.8 21.1 220 197-464 191-448 (463)
154 KOG0642 Cell-cycle nuclear pro 99.7 1.9E-16 4.2E-21 166.8 15.6 184 235-464 311-560 (577)
155 KOG4378 Nuclear protein COP1 [ 99.7 3.9E-16 8.5E-21 162.6 17.6 249 161-464 12-279 (673)
156 KOG0650 WD40 repeat nucleolar 99.7 2.8E-16 6.1E-21 166.4 16.2 219 190-462 405-677 (733)
157 KOG1034 Transcriptional repres 99.7 1.8E-15 3.8E-20 151.7 20.7 220 199-463 106-381 (385)
158 KOG0650 WD40 repeat nucleolar 99.7 1.7E-15 3.6E-20 160.7 20.5 290 97-462 411-732 (733)
159 KOG2055 WD40 repeat protein [G 99.7 6.1E-15 1.3E-19 152.7 23.2 273 89-388 214-511 (514)
160 KOG4328 WD40 protein [Function 99.7 1.5E-15 3.2E-20 157.1 18.3 232 186-463 187-448 (498)
161 KOG1517 Guanine nucleotide bin 99.7 6.2E-15 1.3E-19 163.7 24.3 282 131-463 1066-1379(1387)
162 KOG2110 Uncharacterized conser 99.7 2.1E-14 4.5E-19 145.7 25.2 219 190-463 10-246 (391)
163 KOG2106 Uncharacterized conser 99.7 1E-13 2.2E-18 145.1 30.3 310 88-464 246-625 (626)
164 KOG1538 Uncharacterized conser 99.7 1.4E-14 3.1E-19 154.9 22.7 261 131-463 14-291 (1081)
165 KOG0302 Ribosome Assembly prot 99.6 5.3E-15 1.1E-19 150.3 18.1 209 126-390 148-379 (440)
166 KOG1034 Transcriptional repres 99.6 6.9E-16 1.5E-20 154.6 11.1 320 30-389 28-383 (385)
167 PRK11028 6-phosphogluconolacto 99.6 1.6E-13 3.5E-18 137.9 27.9 216 201-463 5-256 (330)
168 KOG0322 G-protein beta subunit 99.6 2.8E-15 6.1E-20 146.8 14.3 270 127-464 12-322 (323)
169 PRK04922 tolB translocation pr 99.6 4.7E-14 1E-18 148.2 24.5 244 93-401 163-422 (433)
170 KOG0639 Transducin-like enhanc 99.6 9.6E-15 2.1E-19 152.5 17.7 245 109-388 441-703 (705)
171 KOG0303 Actin-binding protein 99.6 2.8E-15 6.2E-20 153.0 13.5 130 256-402 77-216 (472)
172 PRK02889 tolB translocation pr 99.6 7.6E-14 1.7E-18 146.6 24.4 244 93-401 159-414 (427)
173 KOG4378 Nuclear protein COP1 [ 99.6 3.6E-14 7.9E-19 148.1 21.0 265 104-402 8-294 (673)
174 PRK03629 tolB translocation pr 99.6 5.9E-13 1.3E-17 140.2 30.2 200 207-458 178-396 (429)
175 PRK05137 tolB translocation pr 99.6 2.3E-13 4.9E-18 143.1 26.1 244 93-398 161-420 (435)
176 KOG0321 WD40 repeat-containing 99.6 2.8E-14 6E-19 152.3 19.1 253 91-395 103-397 (720)
177 KOG1188 WD40 repeat protein [G 99.6 2.3E-14 5E-19 144.2 17.4 258 161-464 50-345 (376)
178 KOG0644 Uncharacterized conser 99.6 1.5E-15 3.2E-20 165.4 9.3 269 118-461 180-464 (1113)
179 KOG0307 Vesicle coat complex C 99.6 8.2E-15 1.8E-19 164.1 14.7 239 128-392 63-330 (1049)
180 PRK04922 tolB translocation pr 99.6 7.6E-13 1.7E-17 139.1 28.8 196 207-456 183-399 (433)
181 PF08662 eIF2A: Eukaryotic tra 99.6 1.2E-13 2.6E-18 131.1 19.8 109 304-463 60-177 (194)
182 KOG1009 Chromatin assembly com 99.6 2.4E-14 5.2E-19 146.5 13.5 150 261-460 14-190 (434)
183 KOG0642 Cell-cycle nuclear pro 99.6 2.3E-14 5E-19 151.3 12.8 250 123-401 289-573 (577)
184 KOG0771 Prolactin regulatory e 99.5 7E-14 1.5E-18 143.5 14.9 187 189-461 148-350 (398)
185 KOG1009 Chromatin assembly com 99.5 1.4E-13 3E-18 141.0 14.8 207 190-454 18-249 (434)
186 KOG4227 WD40 repeat protein [G 99.5 2E-12 4.4E-17 132.2 22.3 278 126-463 53-385 (609)
187 KOG1445 Tumor-specific antigen 99.5 2.3E-13 4.9E-18 145.2 15.6 232 161-463 603-842 (1012)
188 KOG2110 Uncharacterized conser 99.5 1E-11 2.2E-16 126.3 26.7 179 199-391 57-250 (391)
189 PRK05137 tolB translocation pr 99.5 5.4E-12 1.2E-16 132.7 25.8 197 207-456 181-397 (435)
190 KOG1587 Cytoplasmic dynein int 99.5 3.8E-12 8.3E-17 138.0 24.3 249 162-464 223-515 (555)
191 KOG1007 WD repeat protein TSSC 99.5 1.6E-12 3.5E-17 128.9 18.3 219 109-388 94-360 (370)
192 KOG0307 Vesicle coat complex C 99.5 2.2E-13 4.8E-18 152.8 13.5 266 47-333 31-328 (1049)
193 PRK00178 tolB translocation pr 99.5 1.6E-11 3.4E-16 128.3 26.5 244 93-401 158-417 (430)
194 PRK02889 tolB translocation pr 99.5 5.2E-12 1.1E-16 132.8 22.9 195 208-457 176-392 (427)
195 KOG1273 WD40 repeat protein [G 99.5 1E-12 2.2E-17 131.6 16.2 156 263-463 26-224 (405)
196 PRK04792 tolB translocation pr 99.5 1.4E-11 2.9E-16 130.8 25.5 245 93-402 178-437 (448)
197 PF08662 eIF2A: Eukaryotic tra 99.5 1E-11 2.2E-16 118.0 21.6 165 133-340 9-187 (194)
198 KOG0649 WD40 repeat protein [G 99.5 1.3E-11 2.7E-16 120.4 22.0 219 132-397 13-243 (325)
199 PRK01029 tolB translocation pr 99.4 3.9E-11 8.4E-16 126.8 26.4 248 92-397 141-411 (428)
200 TIGR02800 propeller_TolB tol-p 99.4 4.6E-11 1E-15 123.2 26.1 194 188-400 192-407 (417)
201 KOG1963 WD40 repeat protein [G 99.4 5.3E-11 1.2E-15 131.0 27.8 312 97-463 171-536 (792)
202 KOG1963 WD40 repeat protein [G 99.4 3.1E-11 6.7E-16 132.9 25.9 259 132-461 19-318 (792)
203 PF02239 Cytochrom_D1: Cytochr 99.4 8.7E-11 1.9E-15 122.1 28.1 299 98-463 5-345 (369)
204 KOG0644 Uncharacterized conser 99.4 2.3E-13 5.1E-18 148.6 8.6 214 188-463 193-424 (1113)
205 KOG0974 WD-repeat protein WDR6 99.4 6.4E-12 1.4E-16 140.2 19.7 196 186-464 88-287 (967)
206 KOG1517 Guanine nucleotide bin 99.4 2E-11 4.3E-16 136.4 22.4 230 187-464 1066-1332(1387)
207 KOG1538 Uncharacterized conser 99.4 8.1E-12 1.8E-16 134.2 18.7 244 109-389 34-293 (1081)
208 KOG0322 G-protein beta subunit 99.4 1.9E-12 4.1E-17 127.2 12.8 261 94-388 21-322 (323)
209 PLN02919 haloacid dehalogenase 99.4 1.8E-10 3.8E-15 133.9 31.3 241 185-464 567-887 (1057)
210 KOG1334 WD40 repeat protein [G 99.4 2.7E-12 5.8E-17 134.1 14.1 278 122-463 136-464 (559)
211 TIGR02800 propeller_TolB tol-p 99.4 1E-10 2.2E-15 120.6 24.9 199 207-458 169-387 (417)
212 TIGR03300 assembly_YfgL outer 99.4 1.2E-09 2.5E-14 112.1 31.8 263 95-401 62-350 (377)
213 KOG0649 WD40 repeat protein [G 99.4 2.8E-11 6.1E-16 118.0 18.0 169 190-402 15-199 (325)
214 KOG1445 Tumor-specific antigen 99.4 1.8E-12 3.9E-17 138.5 9.9 115 262-392 629-753 (1012)
215 KOG2315 Predicted translation 99.4 6.8E-10 1.5E-14 117.9 28.9 290 101-463 4-388 (566)
216 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.3E-09 4.9E-14 111.0 32.1 270 108-399 27-340 (352)
217 KOG1272 WD40-repeat-containing 99.4 4.3E-12 9.3E-17 132.0 11.8 190 188-398 132-332 (545)
218 COG5354 Uncharacterized protei 99.4 4.5E-10 9.6E-15 118.3 26.8 303 98-463 44-393 (561)
219 KOG0771 Prolactin regulatory e 99.3 2E-11 4.3E-16 125.6 15.4 197 133-388 148-353 (398)
220 PRK00178 tolB translocation pr 99.3 4.2E-09 9.2E-14 110.1 31.2 167 209-393 180-367 (430)
221 PLN02919 haloacid dehalogenase 99.3 1.8E-09 4E-14 125.6 31.2 255 98-393 580-892 (1057)
222 PRK01029 tolB translocation pr 99.3 7.9E-10 1.7E-14 116.9 25.0 173 241-463 212-401 (428)
223 KOG2111 Uncharacterized conser 99.3 8.5E-10 1.9E-14 110.8 22.8 219 190-463 10-254 (346)
224 PF10282 Lactonase: Lactonase, 99.3 2.1E-08 4.6E-13 102.7 33.6 283 107-463 12-320 (345)
225 KOG1188 WD40 repeat protein [G 99.2 6.6E-11 1.4E-15 119.5 13.1 144 275-463 42-194 (376)
226 KOG2394 WD40 protein DMR-N9 [G 99.2 7.8E-11 1.7E-15 124.5 13.5 89 305-409 292-382 (636)
227 KOG2321 WD40 repeat protein [G 99.2 6.1E-10 1.3E-14 118.6 20.1 225 185-461 48-339 (703)
228 KOG1310 WD40 repeat protein [G 99.2 1.2E-10 2.6E-15 123.3 14.8 162 184-388 46-230 (758)
229 KOG1587 Cytoplasmic dynein int 99.2 1.5E-09 3.2E-14 118.1 23.5 254 108-389 222-516 (555)
230 KOG0974 WD-repeat protein WDR6 99.2 1.8E-10 3.8E-15 128.8 16.7 149 191-390 139-289 (967)
231 KOG1240 Protein kinase contain 99.2 2.2E-09 4.8E-14 121.8 25.2 286 113-463 1034-1332(1431)
232 KOG2111 Uncharacterized conser 99.2 5.4E-09 1.2E-13 105.1 25.0 169 208-390 75-257 (346)
233 PF02239 Cytochrom_D1: Cytochr 99.2 3E-09 6.5E-14 110.7 24.3 249 161-463 16-300 (369)
234 KOG4547 WD40 repeat-containing 99.2 5.4E-10 1.2E-14 119.0 18.9 167 195-368 2-209 (541)
235 KOG1524 WD40 repeat-containing 99.2 1.4E-10 3.1E-15 122.5 14.3 243 190-460 19-281 (737)
236 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.2E-08 9E-13 101.7 31.9 259 153-463 20-328 (352)
237 KOG0290 Conserved WD40 repeat- 99.2 1.3E-09 2.7E-14 108.7 19.6 224 109-390 77-319 (364)
238 KOG1524 WD40 repeat-containing 99.2 4.6E-10 1E-14 118.7 15.9 157 190-368 109-276 (737)
239 PRK04792 tolB translocation pr 99.2 7E-09 1.5E-13 110.2 24.8 166 209-393 199-386 (448)
240 KOG4227 WD40 repeat protein [G 99.1 3E-09 6.5E-14 109.3 19.4 233 185-464 56-321 (609)
241 KOG2314 Translation initiation 99.1 8.4E-09 1.8E-13 109.7 23.3 309 87-457 207-559 (698)
242 KOG1334 WD40 repeat protein [G 99.1 1.5E-09 3.3E-14 113.8 14.2 230 190-463 147-422 (559)
243 KOG2139 WD40 repeat protein [G 99.0 1.6E-08 3.5E-13 103.3 19.4 167 190-367 103-299 (445)
244 KOG3881 Uncharacterized conser 99.0 1.1E-08 2.5E-13 105.0 18.4 214 197-463 68-318 (412)
245 KOG4547 WD40 repeat-containing 99.0 2.1E-08 4.5E-13 107.2 20.3 148 237-402 12-185 (541)
246 KOG3881 Uncharacterized conser 99.0 4.5E-08 9.7E-13 100.7 20.5 235 130-397 56-328 (412)
247 KOG3914 WD repeat protein WDR4 99.0 3.2E-09 6.9E-14 109.2 12.1 162 190-399 67-233 (390)
248 KOG1354 Serine/threonine prote 99.0 4.1E-08 9E-13 99.8 19.0 290 128-463 24-357 (433)
249 KOG1272 WD40-repeat-containing 99.0 5.1E-10 1.1E-14 116.8 5.2 171 239-464 150-322 (545)
250 KOG4497 Uncharacterized conser 98.9 2.1E-09 4.6E-14 108.6 7.4 167 273-462 60-237 (447)
251 KOG0290 Conserved WD40 repeat- 98.9 4.7E-08 1E-12 97.7 16.3 157 261-464 151-317 (364)
252 KOG2139 WD40 repeat protein [G 98.9 9E-08 2E-12 97.9 18.3 170 228-451 100-296 (445)
253 KOG1523 Actin-related protein 98.9 1E-07 2.2E-12 96.2 18.5 216 188-461 13-232 (361)
254 PF00400 WD40: WD domain, G-be 98.9 3.5E-09 7.7E-14 73.9 5.8 39 391-463 1-39 (39)
255 PF10282 Lactonase: Lactonase, 98.9 2.2E-06 4.7E-11 87.9 28.7 246 97-396 47-331 (345)
256 PRK04043 tolB translocation pr 98.9 1.3E-06 2.8E-11 92.5 27.2 237 95-397 152-407 (419)
257 KOG1310 WD40 repeat protein [G 98.9 9.5E-09 2.1E-13 109.2 10.9 169 254-463 44-229 (758)
258 TIGR03300 assembly_YfgL outer 98.9 1.9E-06 4E-11 88.5 27.6 205 162-397 76-305 (377)
259 KOG2394 WD40 protein DMR-N9 [G 98.9 9.8E-09 2.1E-13 108.9 10.6 105 237-358 278-384 (636)
260 KOG2315 Predicted translation 98.8 1.2E-06 2.5E-11 93.7 24.8 278 94-395 41-395 (566)
261 PF13360 PQQ_2: PQQ-like domai 98.8 3.9E-06 8.4E-11 79.5 26.1 205 162-396 4-237 (238)
262 KOG1523 Actin-related protein 98.8 4E-07 8.7E-12 92.0 19.6 202 130-391 11-238 (361)
263 PF08450 SGL: SMP-30/Gluconola 98.8 3.4E-05 7.4E-10 74.7 31.6 211 188-454 2-244 (246)
264 KOG1240 Protein kinase contain 98.8 9.4E-08 2E-12 109.0 15.5 174 245-464 1034-1224(1431)
265 KOG4497 Uncharacterized conser 98.8 6.2E-07 1.3E-11 91.1 19.4 279 98-457 61-424 (447)
266 PRK11138 outer membrane biogen 98.8 8.8E-06 1.9E-10 84.6 28.5 265 95-399 66-363 (394)
267 PRK04043 tolB translocation pr 98.8 1.8E-06 3.9E-11 91.4 23.4 141 242-397 215-364 (419)
268 KOG2695 WD40 repeat protein [G 98.7 4.9E-08 1.1E-12 99.3 10.5 153 229-399 223-386 (425)
269 PF00400 WD40: WD domain, G-be 98.7 2.2E-08 4.8E-13 69.8 5.7 39 333-387 1-39 (39)
270 PF07433 DUF1513: Protein of u 98.7 3E-06 6.4E-11 86.2 23.3 224 132-397 7-255 (305)
271 PF13360 PQQ_2: PQQ-like domai 98.7 1.6E-05 3.5E-10 75.3 27.2 204 207-464 2-229 (238)
272 KOG2321 WD40 repeat protein [G 98.7 3.7E-07 7.9E-12 97.8 17.1 226 126-368 48-333 (703)
273 PF15492 Nbas_N: Neuroblastoma 98.6 2.1E-05 4.4E-10 78.8 25.0 196 190-464 48-258 (282)
274 KOG1064 RAVE (regulator of V-A 98.6 1.9E-07 4E-12 109.6 11.3 202 196-464 2178-2397(2439)
275 KOG0309 Conserved WD40 repeat- 98.6 3.9E-07 8.6E-12 99.8 12.5 294 89-463 27-337 (1081)
276 KOG1354 Serine/threonine prote 98.6 5.1E-06 1.1E-10 84.9 18.7 305 98-458 37-428 (433)
277 KOG4190 Uncharacterized conser 98.5 3.2E-07 7E-12 97.8 9.3 165 197-401 746-918 (1034)
278 COG2706 3-carboxymuconate cycl 98.5 0.00011 2.4E-09 75.4 26.7 228 161-455 16-263 (346)
279 COG5354 Uncharacterized protei 98.5 3.5E-05 7.5E-10 82.0 23.4 254 102-395 5-311 (561)
280 KOG3914 WD repeat protein WDR4 98.5 1.4E-06 3E-11 90.0 12.7 147 190-340 78-232 (390)
281 COG5170 CDC55 Serine/threonine 98.5 5.5E-06 1.2E-10 83.9 16.0 282 127-458 24-360 (460)
282 KOG4190 Uncharacterized conser 98.4 4.8E-07 1E-11 96.5 8.5 169 253-463 728-904 (1034)
283 KOG0309 Conserved WD40 repeat- 98.4 1.8E-06 3.9E-11 94.7 11.0 273 42-332 18-339 (1081)
284 COG2706 3-carboxymuconate cycl 98.4 0.0003 6.6E-09 72.3 25.9 277 107-461 15-317 (346)
285 KOG1064 RAVE (regulator of V-A 98.3 2.8E-06 6.2E-11 100.1 12.0 156 257-464 2205-2365(2439)
286 PF08450 SGL: SMP-30/Gluconola 98.3 0.00095 2.1E-08 64.6 26.6 219 98-365 12-242 (246)
287 COG4946 Uncharacterized protei 98.3 0.00021 4.5E-09 75.9 23.2 245 98-366 236-506 (668)
288 KOG0280 Uncharacterized conser 98.2 4.6E-05 1E-09 76.7 16.5 99 255-359 160-264 (339)
289 PF04762 IKI3: IKI3 family; I 98.2 0.0031 6.8E-08 73.3 33.7 265 98-389 221-519 (928)
290 KOG0882 Cyclophilin-related pe 98.2 3.6E-05 7.7E-10 81.1 15.7 241 128-398 8-314 (558)
291 PRK11138 outer membrane biogen 98.2 0.00096 2.1E-08 69.4 25.4 217 96-341 118-363 (394)
292 KOG1409 Uncharacterized conser 98.1 8E-05 1.7E-09 76.3 15.3 248 120-464 16-269 (404)
293 PF14583 Pectate_lyase22: Olig 98.1 0.0032 6.9E-08 66.2 26.7 304 114-462 16-378 (386)
294 KOG1409 Uncharacterized conser 98.1 0.00069 1.5E-08 69.6 20.7 220 98-333 36-271 (404)
295 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0017 3.8E-08 66.8 23.2 232 108-364 23-296 (353)
296 smart00320 WD40 WD40 repeats. 98.0 2.2E-05 4.7E-10 50.3 6.0 27 437-463 14-40 (40)
297 COG4946 Uncharacterized protei 98.0 0.017 3.6E-07 61.9 30.3 109 306-464 362-476 (668)
298 COG5170 CDC55 Serine/threonine 98.0 1.5E-05 3.2E-10 80.8 7.5 251 67-368 67-357 (460)
299 KOG4532 WD40-like repeat conta 98.0 0.00069 1.5E-08 67.8 18.9 218 199-458 85-325 (344)
300 PRK02888 nitrous-oxide reducta 98.0 0.00095 2.1E-08 73.8 21.2 178 191-390 198-405 (635)
301 KOG0280 Uncharacterized conser 98.0 0.00022 4.8E-09 71.9 14.8 136 279-464 91-240 (339)
302 PF04762 IKI3: IKI3 family; I 97.9 0.012 2.7E-07 68.5 31.1 192 239-463 236-454 (928)
303 cd00216 PQQ_DH Dehydrogenases 97.9 0.0084 1.8E-07 64.8 27.8 268 96-399 59-434 (488)
304 PF06433 Me-amine-dh_H: Methyl 97.8 0.017 3.7E-07 59.9 26.5 270 108-401 17-332 (342)
305 KOG2314 Translation initiation 97.8 0.001 2.2E-08 71.9 17.0 178 186-401 210-393 (698)
306 PF07433 DUF1513: Protein of u 97.8 0.0026 5.7E-08 65.0 19.3 205 190-463 9-245 (305)
307 PRK02888 nitrous-oxide reducta 97.8 0.0021 4.5E-08 71.2 19.6 201 185-401 234-485 (635)
308 COG3391 Uncharacterized conser 97.7 0.085 1.8E-06 55.3 30.5 261 110-402 13-296 (381)
309 COG3391 Uncharacterized conser 97.6 0.046 9.9E-07 57.3 27.0 220 187-461 32-279 (381)
310 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.11 2.4E-06 56.9 30.9 269 97-401 68-502 (527)
311 KOG4532 WD40-like repeat conta 97.6 0.0056 1.2E-07 61.5 18.8 217 98-370 84-312 (344)
312 smart00320 WD40 WD40 repeats. 97.6 0.00014 2.9E-09 46.5 5.2 39 292-330 1-40 (40)
313 KOG1832 HIV-1 Vpr-binding prot 97.6 3.6E-05 7.7E-10 86.2 3.6 178 190-399 1106-1301(1516)
314 KOG2695 WD40 repeat protein [G 97.6 0.00021 4.5E-09 73.5 8.3 154 202-357 228-401 (425)
315 KOG2041 WD40 repeat protein [G 97.5 0.0003 6.6E-09 77.6 8.3 149 264-464 18-185 (1189)
316 PF04053 Coatomer_WDAD: Coatom 97.5 0.01 2.3E-07 63.7 19.6 206 186-462 33-259 (443)
317 KOG4714 Nucleoporin [Nuclear s 97.4 0.00083 1.8E-08 67.0 9.0 154 283-464 159-317 (319)
318 COG0823 TolB Periplasmic compo 97.4 0.059 1.3E-06 57.6 23.6 120 240-367 218-344 (425)
319 COG0823 TolB Periplasmic compo 97.3 0.066 1.4E-06 57.3 22.8 206 109-368 174-389 (425)
320 KOG1832 HIV-1 Vpr-binding prot 97.2 0.0003 6.5E-09 79.1 4.7 117 262-399 1103-1225(1516)
321 KOG1275 PAB-dependent poly(A) 97.2 0.0048 1E-07 70.0 13.7 179 273-463 147-340 (1118)
322 PF11768 DUF3312: Protein of u 97.2 0.0046 1E-07 67.3 13.1 139 241-397 185-337 (545)
323 PF11768 DUF3312: Protein of u 97.2 0.0013 2.8E-08 71.4 8.6 128 283-464 184-328 (545)
324 PF06433 Me-amine-dh_H: Methyl 97.0 0.59 1.3E-05 48.7 26.7 260 154-463 11-318 (342)
325 cd00216 PQQ_DH Dehydrogenases 97.0 0.34 7.3E-06 52.5 24.8 226 99-340 111-433 (488)
326 PF15492 Nbas_N: Neuroblastoma 96.9 0.075 1.6E-06 53.7 18.0 86 273-359 8-102 (282)
327 KOG1912 WD40 repeat protein [G 96.9 0.084 1.8E-06 59.5 19.7 226 190-463 20-302 (1062)
328 KOG3617 WD40 and TPR repeat-co 96.9 0.02 4.4E-07 64.8 15.0 224 227-463 27-331 (1416)
329 KOG2041 WD40 repeat protein [G 96.8 0.013 2.8E-07 65.2 12.8 160 129-335 14-189 (1189)
330 PF00780 CNH: CNH domain; Int 96.8 0.55 1.2E-05 45.9 27.0 239 95-401 4-267 (275)
331 TIGR03118 PEPCTERM_chp_1 conse 96.8 0.74 1.6E-05 47.5 24.1 199 184-402 21-292 (336)
332 KOG4714 Nucleoporin [Nuclear s 96.8 0.011 2.5E-07 59.1 10.7 86 261-346 180-271 (319)
333 PF14583 Pectate_lyase22: Olig 96.8 0.5 1.1E-05 50.1 23.4 248 98-368 48-370 (386)
334 KOG1912 WD40 repeat protein [G 96.7 0.021 4.5E-07 64.2 13.4 116 264-398 19-152 (1062)
335 PF00930 DPPIV_N: Dipeptidyl p 96.5 1.2 2.7E-05 45.8 26.9 283 55-368 12-347 (353)
336 KOG4649 PQQ (pyrrolo-quinoline 96.5 1.2 2.7E-05 45.1 27.2 263 98-402 23-311 (354)
337 COG3386 Gluconolactonase [Carb 96.4 1.5 3.2E-05 45.1 23.9 99 286-400 144-253 (307)
338 KOG1275 PAB-dependent poly(A) 96.3 0.046 1E-06 62.4 13.1 169 109-331 158-341 (1118)
339 KOG0882 Cyclophilin-related pe 96.3 0.076 1.6E-06 56.7 13.8 227 98-340 20-314 (558)
340 KOG1645 RING-finger-containing 96.3 0.0074 1.6E-07 63.3 6.3 76 338-464 188-265 (463)
341 PF06977 SdiA-regulated: SdiA- 96.3 0.4 8.7E-06 47.8 18.3 183 124-322 17-240 (248)
342 PF03178 CPSF_A: CPSF A subuni 96.3 0.59 1.3E-05 47.3 19.8 130 283-463 62-200 (321)
343 PF02897 Peptidase_S9_N: Proly 96.2 1.9 4.1E-05 45.0 30.4 234 131-393 125-408 (414)
344 PF04841 Vps16_N: Vps16, N-ter 96.2 0.31 6.7E-06 51.8 18.0 51 241-295 62-112 (410)
345 TIGR02604 Piru_Ver_Nterm putat 96.2 0.25 5.4E-06 51.4 16.9 80 284-367 48-142 (367)
346 KOG2066 Vacuolar assembly/sort 96.0 0.097 2.1E-06 59.1 13.6 148 195-389 80-233 (846)
347 PRK10115 protease 2; Provision 96.0 4 8.6E-05 46.4 34.6 233 131-392 128-397 (686)
348 KOG1008 Uncharacterized conser 96.0 0.0014 3.1E-08 71.8 -0.7 186 99-292 71-276 (783)
349 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.34 7.4E-06 42.8 14.1 75 264-342 3-81 (111)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.9 3.5 7.5E-05 45.4 25.9 187 197-395 69-339 (527)
351 KOG1008 Uncharacterized conser 95.9 0.0017 3.7E-08 71.2 -0.7 156 261-463 103-273 (783)
352 KOG1916 Nuclear protein, conta 95.9 0.0014 3.1E-08 74.1 -1.4 105 275-394 197-328 (1283)
353 PF04841 Vps16_N: Vps16, N-ter 95.9 2.4 5.3E-05 45.1 22.9 163 209-400 62-257 (410)
354 KOG2066 Vacuolar assembly/sort 95.9 0.13 2.9E-06 58.0 13.7 184 80-292 31-234 (846)
355 PF04053 Coatomer_WDAD: Coatom 95.8 0.58 1.3E-05 50.5 18.0 130 264-458 36-167 (443)
356 PF03178 CPSF_A: CPSF A subuni 95.8 2.5 5.5E-05 42.7 23.1 130 240-389 62-202 (321)
357 KOG2444 WD40 repeat protein [G 95.8 0.016 3.5E-07 56.9 5.5 133 275-464 32-176 (238)
358 KOG1920 IkappaB kinase complex 95.8 0.54 1.2E-05 55.5 18.4 113 307-463 199-320 (1265)
359 PF14783 BBS2_Mid: Ciliary BBS 95.6 0.69 1.5E-05 40.9 14.7 63 306-387 2-69 (111)
360 PF02897 Peptidase_S9_N: Proly 95.6 0.45 9.8E-06 49.6 15.9 99 281-391 148-262 (414)
361 KOG4640 Anaphase-promoting com 95.6 0.059 1.3E-06 59.4 9.5 75 306-396 23-99 (665)
362 PF08553 VID27: VID27 cytoplas 95.5 0.42 9.1E-06 54.9 16.2 134 237-389 501-647 (794)
363 PRK13616 lipoprotein LpqB; Pro 95.4 1.3 2.9E-05 49.4 19.7 196 130-365 350-556 (591)
364 PF07995 GSDH: Glucose / Sorbo 95.4 0.43 9.3E-06 49.1 14.6 64 304-368 2-72 (331)
365 KOG2114 Vacuolar assembly/sort 95.2 0.47 1E-05 54.2 15.0 103 272-386 34-152 (933)
366 KOG1645 RING-finger-containing 95.2 0.047 1E-06 57.5 6.8 82 259-341 192-277 (463)
367 PRK13616 lipoprotein LpqB; Pro 95.1 1.2 2.6E-05 49.7 18.2 77 282-366 429-514 (591)
368 TIGR02604 Piru_Ver_Nterm putat 95.1 0.91 2E-05 47.2 16.2 98 261-367 72-202 (367)
369 KOG4649 PQQ (pyrrolo-quinoline 94.8 1.8 3.9E-05 44.0 16.5 212 97-332 104-351 (354)
370 KOG2079 Vacuolar assembly/sort 94.5 0.13 2.9E-06 59.7 8.9 92 274-367 100-194 (1206)
371 KOG3617 WD40 and TPR repeat-co 94.5 0.07 1.5E-06 60.7 6.4 88 323-463 40-129 (1416)
372 PF08553 VID27: VID27 cytoplas 94.4 0.93 2E-05 52.2 15.1 125 280-454 501-637 (794)
373 KOG4640 Anaphase-promoting com 94.3 0.23 5E-06 55.0 9.6 76 262-339 22-100 (665)
374 COG3386 Gluconolactonase [Carb 94.0 3.4 7.3E-05 42.6 17.1 144 281-462 45-190 (307)
375 PF07995 GSDH: Glucose / Sorbo 93.6 5.5 0.00012 41.0 17.9 100 263-368 4-133 (331)
376 KOG3621 WD40 repeat-containing 93.5 0.25 5.5E-06 55.2 8.2 93 273-367 45-143 (726)
377 PRK10115 protease 2; Provision 93.3 18 0.00039 41.2 27.2 188 190-397 131-353 (686)
378 TIGR03606 non_repeat_PQQ dehyd 93.3 3.3 7.1E-05 45.0 16.2 73 296-368 22-105 (454)
379 PF14870 PSII_BNR: Photosynthe 93.3 10 0.00022 39.0 19.0 111 304-459 145-256 (302)
380 PF10647 Gmad1: Lipoprotein Lp 93.0 6.9 0.00015 38.8 17.0 100 262-368 25-131 (253)
381 KOG2114 Vacuolar assembly/sort 92.9 0.82 1.8E-05 52.3 11.2 113 311-462 31-152 (933)
382 COG3490 Uncharacterized protei 92.8 3.9 8.5E-05 42.1 14.8 154 191-365 40-242 (366)
383 PF10647 Gmad1: Lipoprotein Lp 92.8 3.7 8.1E-05 40.7 14.7 99 305-454 25-130 (253)
384 TIGR03606 non_repeat_PQQ dehyd 92.6 10 0.00022 41.2 18.8 102 261-368 30-165 (454)
385 PLN00033 photosystem II stabil 92.5 11 0.00023 40.3 18.5 139 274-460 250-394 (398)
386 PF05096 Glu_cyclase_2: Glutam 92.4 14 0.0003 37.5 24.0 163 218-399 33-213 (264)
387 KOG2444 WD40 repeat protein [G 92.3 0.38 8.3E-06 47.5 6.8 104 273-389 70-177 (238)
388 TIGR03074 PQQ_membr_DH membran 92.3 20 0.00044 41.4 21.6 151 237-399 267-487 (764)
389 PRK13684 Ycf48-like protein; P 92.2 6.3 0.00014 40.7 16.0 60 304-367 173-233 (334)
390 PF06977 SdiA-regulated: SdiA- 92.1 6.5 0.00014 39.3 15.4 122 298-462 16-144 (248)
391 PLN00033 photosystem II stabil 92.0 11 0.00023 40.3 17.8 99 264-367 284-389 (398)
392 PRK13684 Ycf48-like protein; P 91.9 9.7 0.00021 39.3 17.1 99 262-367 174-278 (334)
393 KOG1920 IkappaB kinase complex 91.7 3.8 8.3E-05 48.7 14.9 138 98-253 207-360 (1265)
394 KOG2079 Vacuolar assembly/sort 91.3 0.87 1.9E-05 53.3 9.1 71 318-402 102-173 (1206)
395 PF05096 Glu_cyclase_2: Glutam 91.2 18 0.0004 36.6 24.1 172 190-367 49-249 (264)
396 PF11715 Nup160: Nucleoporin N 90.3 0.54 1.2E-05 51.3 6.3 39 351-400 217-259 (547)
397 COG3490 Uncharacterized protei 90.1 11 0.00025 38.8 14.9 114 248-367 56-180 (366)
398 PF13449 Phytase-like: Esteras 90.0 25 0.00054 36.1 18.1 64 305-368 86-166 (326)
399 COG3204 Uncharacterized protei 89.9 27 0.00057 36.2 18.3 198 128-363 85-298 (316)
400 PF08596 Lgl_C: Lethal giant l 89.7 31 0.00067 36.8 18.6 183 186-400 87-301 (395)
401 COG3823 Glutamine cyclotransfe 89.5 8.2 0.00018 38.2 12.8 161 190-366 50-247 (262)
402 PF08596 Lgl_C: Lethal giant l 89.3 33 0.00072 36.5 20.4 215 189-463 5-288 (395)
403 PF12894 Apc4_WD40: Anaphase-p 89.2 0.95 2.1E-05 33.8 4.9 33 304-336 12-45 (47)
404 PF07569 Hira: TUP1-like enhan 89.1 3.2 7E-05 40.5 10.0 76 266-341 15-104 (219)
405 PF12894 Apc4_WD40: Anaphase-p 88.3 0.99 2.1E-05 33.7 4.5 33 351-395 14-46 (47)
406 PF14655 RAB3GAP2_N: Rab3 GTPa 88.3 3.3 7.1E-05 44.5 10.2 91 297-400 301-409 (415)
407 KOG1916 Nuclear protein, conta 88.2 0.2 4.3E-06 57.5 1.0 140 311-464 191-373 (1283)
408 KOG2395 Protein involved in va 87.9 7.2 0.00016 43.0 12.4 124 205-331 354-499 (644)
409 PF14269 Arylsulfotran_2: Aryl 87.7 26 0.00056 35.9 16.0 39 351-400 146-184 (299)
410 PF00780 CNH: CNH domain; Int 87.1 31 0.00067 33.6 16.9 56 273-331 7-63 (275)
411 PF14870 PSII_BNR: Photosynthe 86.9 40 0.00087 34.7 18.0 118 264-396 148-267 (302)
412 PF11715 Nup160: Nucleoporin N 86.4 3.6 7.7E-05 44.9 9.5 38 305-342 216-259 (547)
413 PF05935 Arylsulfotrans: Aryls 85.5 39 0.00085 36.7 16.8 111 281-400 126-242 (477)
414 KOG2395 Protein involved in va 85.2 17 0.00037 40.2 13.5 132 238-388 354-499 (644)
415 TIGR03074 PQQ_membr_DH membran 83.7 94 0.002 36.1 23.0 192 197-399 194-432 (764)
416 KOG3621 WD40 repeat-containing 83.1 3.8 8.2E-05 46.2 7.7 116 90-217 37-155 (726)
417 PF12234 Rav1p_C: RAVE protein 82.8 13 0.00027 42.2 11.7 88 274-366 41-146 (631)
418 PF08801 Nucleoporin_N: Nup133 81.5 26 0.00057 36.9 13.2 28 437-464 191-218 (422)
419 PF07250 Glyoxal_oxid_N: Glyox 81.5 22 0.00048 35.5 11.8 77 287-368 50-137 (243)
420 TIGR02276 beta_rpt_yvtn 40-res 81.3 5.9 0.00013 27.3 5.7 39 196-234 1-41 (42)
421 KOG4499 Ca2+-binding protein R 80.6 43 0.00094 33.9 13.2 100 288-402 134-254 (310)
422 KOG1897 Damage-specific DNA bi 80.4 1E+02 0.0022 36.7 17.8 180 109-329 751-939 (1096)
423 PF05935 Arylsulfotrans: Aryls 80.2 95 0.0021 33.8 20.5 145 240-403 128-315 (477)
424 KOG1900 Nuclear pore complex, 79.2 17 0.00036 44.0 11.5 161 280-464 96-271 (1311)
425 PF07569 Hira: TUP1-like enhan 78.7 6.8 0.00015 38.2 7.1 70 79-148 3-85 (219)
426 TIGR02276 beta_rpt_yvtn 40-res 77.2 10 0.00022 26.1 5.9 40 272-312 2-42 (42)
427 PF07676 PD40: WD40-like Beta 75.8 9.2 0.0002 26.4 5.3 26 304-329 9-38 (39)
428 PF07250 Glyoxal_oxid_N: Glyox 75.2 54 0.0012 32.8 12.4 106 274-398 78-206 (243)
429 COG3823 Glutamine cyclotransfe 74.8 92 0.002 31.1 13.4 169 240-453 68-247 (262)
430 KOG2280 Vacuolar assembly/sort 74.4 98 0.0021 35.8 15.3 95 242-341 66-165 (829)
431 PF07676 PD40: WD40-like Beta 74.2 13 0.00028 25.6 5.7 18 351-368 11-28 (39)
432 PF13449 Phytase-like: Esteras 72.6 90 0.002 32.0 13.8 78 351-455 87-166 (326)
433 PF14655 RAB3GAP2_N: Rab3 GTPa 69.5 26 0.00057 37.7 9.3 51 336-402 300-350 (415)
434 PF14761 HPS3_N: Hermansky-Pud 67.7 10 0.00022 37.4 5.2 56 90-147 19-77 (215)
435 KOG4441 Proteins containing BT 67.4 1.3E+02 0.0029 33.6 14.6 98 264-368 326-436 (571)
436 PHA02713 hypothetical protein; 65.6 2.2E+02 0.0049 31.6 19.8 101 284-402 433-546 (557)
437 PF08728 CRT10: CRT10; InterP 64.5 51 0.0011 38.0 10.7 100 274-388 115-245 (717)
438 KOG4499 Ca2+-binding protein R 63.3 71 0.0015 32.4 10.2 82 307-401 215-299 (310)
439 PF12234 Rav1p_C: RAVE protein 62.2 1.1E+02 0.0025 34.8 12.8 29 301-330 125-154 (631)
440 PF07202 Tcp10_C: T-complex pr 61.5 1.5E+02 0.0033 28.3 21.8 24 358-394 152-175 (179)
441 PF12768 Rax2: Cortical protei 60.5 1.4E+02 0.0031 30.4 12.2 83 283-366 16-108 (281)
442 TIGR02171 Fb_sc_TIGR02171 Fibr 60.4 2.8E+02 0.0062 33.0 15.7 63 281-348 529-604 (912)
443 PF10313 DUF2415: Uncharacteri 60.2 26 0.00055 26.0 4.9 30 263-292 3-34 (43)
444 KOG3630 Nuclear pore complex, 59.9 81 0.0018 38.1 11.3 101 268-370 163-265 (1405)
445 COG3204 Uncharacterized protei 59.2 1.4E+02 0.0031 31.0 11.8 122 300-462 82-207 (316)
446 PF01436 NHL: NHL repeat; Int 57.8 28 0.0006 22.8 4.4 27 186-213 2-28 (28)
447 KOG2280 Vacuolar assembly/sort 55.9 3.9E+02 0.0084 31.3 15.4 37 351-398 219-255 (829)
448 PF01436 NHL: NHL repeat; Int 53.8 37 0.0008 22.2 4.5 25 304-328 2-27 (28)
449 PHA03098 kelch-like protein; P 52.6 3.3E+02 0.0072 29.4 15.5 114 274-394 343-469 (534)
450 PF15390 DUF4613: Domain of un 51.9 4.1E+02 0.0089 30.3 15.3 142 215-367 2-174 (671)
451 TIGR03032 conserved hypothetic 51.2 1.4E+02 0.003 31.4 10.3 82 188-271 205-315 (335)
452 PF10313 DUF2415: Uncharacteri 50.8 34 0.00074 25.4 4.3 28 437-464 2-32 (43)
453 PHA02713 hypothetical protein; 50.5 3.9E+02 0.0085 29.6 18.1 68 274-343 464-545 (557)
454 PF14761 HPS3_N: Hermansky-Pud 49.3 77 0.0017 31.3 7.8 57 305-367 19-78 (215)
455 PF03088 Str_synth: Strictosid 46.8 1.6E+02 0.0035 24.9 8.5 76 352-462 1-85 (89)
456 COG1520 FOG: WD40-like repeat 46.7 3E+02 0.0064 28.4 12.3 71 273-343 68-141 (370)
457 PF05694 SBP56: 56kDa selenium 45.0 1.2E+02 0.0027 33.1 9.1 99 281-390 220-343 (461)
458 PF03498 CDtoxinA: Cytolethal 44.6 1.1E+02 0.0023 28.5 7.7 62 281-344 50-116 (150)
459 KOG1900 Nuclear pore complex, 43.0 2.6E+02 0.0057 34.4 12.1 26 304-331 179-204 (1311)
460 COG2133 Glucose/sorbosone dehy 42.1 2.4E+02 0.0052 30.4 10.8 30 334-368 166-196 (399)
461 smart00564 PQQ beta-propeller 41.9 60 0.0013 21.1 4.2 26 273-298 6-31 (33)
462 KOG2377 Uncharacterized conser 41.7 1.2E+02 0.0025 33.6 8.3 31 304-334 67-98 (657)
463 PF10168 Nup88: Nuclear pore c 41.3 3.6E+02 0.0078 31.3 12.7 28 437-464 148-178 (717)
464 COG5167 VID27 Protein involved 40.9 62 0.0014 36.1 6.2 58 273-331 573-631 (776)
465 PF05694 SBP56: 56kDa selenium 40.9 5.3E+02 0.011 28.4 13.8 28 305-332 313-342 (461)
466 KOG1983 Tomosyn and related SN 40.5 4.3E+02 0.0093 31.9 13.6 27 188-215 38-64 (993)
467 PF10395 Utp8: Utp8 family; I 40.4 6.3E+02 0.014 29.2 14.2 158 226-398 129-314 (670)
468 TIGR03118 PEPCTERM_chp_1 conse 39.8 1.2E+02 0.0027 31.7 7.9 68 238-306 220-294 (336)
469 PF12768 Rax2: Cortical protei 39.1 4.4E+02 0.0095 26.9 12.6 87 242-330 18-121 (281)
470 COG5167 VID27 Protein involved 38.2 2.8E+02 0.006 31.3 10.5 128 241-388 491-631 (776)
471 PF13570 PQQ_3: PQQ-like domai 38.1 1.2E+02 0.0027 20.9 5.6 21 272-292 20-40 (40)
472 COG1520 FOG: WD40-like repeat 37.6 4.7E+02 0.01 26.8 13.5 31 273-303 111-141 (370)
473 KOG4441 Proteins containing BT 36.5 6.5E+02 0.014 28.2 21.8 209 92-339 285-506 (571)
474 TIGR03032 conserved hypothetic 35.2 5.6E+02 0.012 27.0 18.3 126 185-316 151-317 (335)
475 KOG1983 Tomosyn and related SN 34.5 6.4E+02 0.014 30.4 13.8 55 274-335 210-268 (993)
476 PF01731 Arylesterase: Arylest 33.9 1.7E+02 0.0036 24.7 6.5 46 283-331 36-83 (86)
477 PF10395 Utp8: Utp8 family; I 33.8 6.1E+02 0.013 29.3 12.8 158 89-257 130-314 (670)
478 PF10411 DsbC_N: Disulfide bon 32.3 45 0.00097 25.6 2.6 15 353-367 35-49 (57)
479 TIGR02608 delta_60_rpt delta-6 32.2 1.5E+02 0.0033 22.9 5.5 18 131-148 2-19 (55)
480 PF01011 PQQ: PQQ enzyme repea 31.9 79 0.0017 21.9 3.7 29 100-128 2-30 (38)
481 PF01011 PQQ: PQQ enzyme repea 31.8 77 0.0017 21.9 3.6 25 275-299 2-26 (38)
482 PF10168 Nup88: Nuclear pore c 31.5 8.8E+02 0.019 28.2 14.1 76 305-391 86-181 (717)
483 PF14269 Arylsulfotran_2: Aryl 30.3 6.1E+02 0.013 25.9 15.3 125 324-459 25-167 (299)
484 PF03088 Str_synth: Strictosid 30.3 1.7E+02 0.0037 24.8 6.1 50 279-329 33-85 (89)
485 PF08728 CRT10: CRT10; InterP 30.1 2.5E+02 0.0055 32.5 9.1 104 98-215 114-245 (717)
486 PF01731 Arylesterase: Arylest 29.9 1.6E+02 0.0036 24.7 5.9 28 352-389 57-84 (86)
487 smart00108 B_lectin Bulb-type 28.6 2.8E+02 0.0061 23.6 7.4 26 304-330 85-110 (114)
488 PF14781 BBS2_N: Ciliary BBSom 28.5 4.7E+02 0.01 24.1 11.9 119 192-336 5-129 (136)
489 TIGR02608 delta_60_rpt delta-6 28.2 74 0.0016 24.6 3.2 19 437-455 2-20 (55)
490 PF11635 Med16: Mediator compl 27.8 1.5E+02 0.0032 34.4 7.0 43 81-123 252-296 (753)
491 KOG2377 Uncharacterized conser 27.6 9E+02 0.02 27.0 13.6 117 229-364 45-169 (657)
492 PF02333 Phytase: Phytase; In 26.2 8.3E+02 0.018 26.2 21.9 180 230-463 68-288 (381)
493 KOG2247 WD40 repeat-containing 26.0 8.7 0.00019 42.1 -3.0 144 190-337 39-193 (615)
494 PF14727 PHTB1_N: PTHB1 N-term 25.7 8.8E+02 0.019 26.3 26.8 133 197-331 36-203 (418)
495 cd00028 B_lectin Bulb-type man 25.3 3.1E+02 0.0068 23.4 7.1 26 305-331 87-112 (116)
496 KOG2100 Dipeptidyl aminopeptid 24.5 8.2E+02 0.018 28.5 12.1 87 274-366 65-165 (755)
497 PF05787 DUF839: Bacterial pro 24.3 2.1E+02 0.0046 31.8 7.1 66 353-451 440-517 (524)
498 PF12657 TFIIIC_delta: Transcr 24.3 5.7E+02 0.012 23.6 9.6 27 437-463 87-119 (173)
499 PF06739 SBBP: Beta-propeller 24.0 1.3E+02 0.0029 21.2 3.6 21 437-457 14-34 (38)
500 PF11635 Med16: Mediator compl 23.9 1.2E+03 0.026 27.1 16.3 66 261-327 260-345 (753)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-48 Score=393.14 Aligned_cols=310 Identities=13% Similarity=0.220 Sum_probs=279.9
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|...-|+ |..|++++-|-++++||..|..++.++ .+|.+||-+|+++|||+.||+ ++-+ .+|.||
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDgk~iAS----G~~d------g~I~lw 184 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDGKKIAS----GSKD------GSIRLW 184 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCCcchhhc----cccC------CeEEEe
Confidence 456666666 889999999999999999999999999 669999999999999999999 5566 799999
Q ss_pred EeccCCCCC-cccceeeccccCceEEEEeC----CCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE-----
Q 012410 167 YIRRGKPDS-GFALFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI----- 234 (464)
Q Consensus 167 ~i~~G~~~~-~~~l~~~~~~~~~~~VaFs~----pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf----- 234 (464)
|-.+|++.+ .++.|. +|+.+++|-+ |..+.|||+|-|++|+|||++-|+|++++. +..|.+|.+
T Consensus 185 dpktg~~~g~~l~gH~----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gl 260 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHK----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGL 260 (480)
T ss_pred cCCCCCcccccccCcc----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCce
Confidence 999999865 344443 7888888853 678899999999999999999999999887 567888887
Q ss_pred --eCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE-----------------------------------ccCCCeEE
Q 012410 235 --RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI-----------------------------------EQFNEKLL 277 (464)
Q Consensus 235 --s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~-----------------------------------~~~~~~ll 277 (464)
|.+.|.|||+|+..+|.|.++|++|.|+|+.++.+ ++.+|.|+
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 66899999999999999999999999999999887 12345688
Q ss_pred EEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEE
Q 012410 278 VKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 278 a~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
++|+|.|+-||+.... +++.-..||+..|..|.||||++++||+| |..|||||- +|+.+.+|.||-.. |..|
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~-----VYqv 415 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA-----VYQV 415 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce-----eEEE
Confidence 8999999999997654 48889999999999999999999999999 999999999 79999999999988 8899
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 434 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (464)
++|.|.++|+|||+ |.|+|+||+.|.+....|.||.+
T Consensus 416 awsaDsRLlVS~Sk-----------DsTLKvw~V~tkKl~~DLpGh~D-------------------------------- 452 (480)
T KOG0271|consen 416 AWSADSRLLVSGSK-----------DSTLKVWDVRTKKLKQDLPGHAD-------------------------------- 452 (480)
T ss_pred EeccCccEEEEcCC-----------CceEEEEEeeeeeecccCCCCCc--------------------------------
Confidence 99999999999998 99999999999999999999997
Q ss_pred ccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 435 LEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 435 l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+|.+||||+.++||+.|..+|||.
T Consensus 453 --EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 453 --EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --eEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-45 Score=368.73 Aligned_cols=276 Identities=14% Similarity=0.209 Sum_probs=246.8
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
+-..+ .+|.+.|-|+.|+|+|..|++ ++.| .|+||||+.+.-+..+.+. |..|+-+|+++ |||+
T Consensus 107 CssS~-~GH~e~Vl~~~fsp~g~~l~t----GsGD------~TvR~WD~~TeTp~~t~Kg----H~~WVlcvaws-PDgk 170 (480)
T KOG0271|consen 107 CSSSI-AGHGEAVLSVQFSPTGSRLVT----GSGD------TTVRLWDLDTETPLFTCKG----HKNWVLCVAWS-PDGK 170 (480)
T ss_pred ecccc-CCCCCcEEEEEecCCCceEEe----cCCC------ceEEeeccCCCCcceeecC----CccEEEEEEEC-CCcc
Confidence 44456 569999999999999999999 6677 8999999988776544444 44678899998 9999
Q ss_pred EEEEecCCCcEEEEeCCCCeEE-EEec--CCCEeEEEEeC-------------CCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 200 VLTYSAQDSIYKVFDLKNYTML-YSIS--DKHVQEIKIRS-------------SSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l-~tl~--~~~V~~Vafs~-------------s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
.||||+-|++|++||-++|+++ .+|. .++|.+++|-| +.|++|+|||+.-|+|+.++.+|+..|
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 9999999999999999999987 4665 57999999954 479999999999999999999988999
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEc-----------CCC-----------------
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-----------YEN----------------- 315 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs-----------pdg----------------- 315 (464)
.+|.+--+ +.|.+||.|+|||+|+...|.|.++|+||..+|..++.| |-|
T Consensus 251 TCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 251 TCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred EEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 99998432 677789999999999999999999999999999999887 223
Q ss_pred --------cEEEEEe-CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 012410 316 --------QLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 316 --------qllaS~s-D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
..|+|+| |.|+-||+- .-++++.+.||+.- ||.|+||||+++|||+|. |.+||
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l-----Vn~V~fSPd~r~IASaSF-----------DkSVk 392 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL-----VNHVSFSPDGRYIASASF-----------DKSVK 392 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh-----eeeEEECCCccEEEEeec-----------cccee
Confidence 4599999 999999997 47799999999997 999999999999999998 99999
Q ss_pred EEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 385 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 385 lWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|||-.|||-+++|+||-. .|+.|++|.|.+.|+|||.|.|+++||
T Consensus 393 LW~g~tGk~lasfRGHv~----------------------------------~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 393 LWDGRTGKFLASFRGHVA----------------------------------AVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred eeeCCCcchhhhhhhccc----------------------------------eeEEEEeccCccEEEEcCCCceEEEEE
Confidence 999999999999999986 899999999999999999999999998
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-45 Score=374.69 Aligned_cols=278 Identities=13% Similarity=0.132 Sum_probs=251.1
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC-CCc
Q 012410 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGK 199 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p-dGk 199 (464)
|...+.+.+..|-.++||+|++.|+| ++-+ +++++|..++++...++.+|+ ..++.+.|.|. ++.
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT----~sws------G~~kvW~~~~~~~~~~l~gH~----~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLAT----GSWS------GLVKVWSVPQCNLLQTLRGHT----SRVGAAVFHPVDSDL 232 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEE----eecC------CceeEeecCCcceeEEEeccc----cceeeEEEccCCCcc
Confidence 34556778888999999999999999 4555 799999999998877777666 44569999865 388
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
.|||||.|+|+|+|++.+-.+|..|. ...|-.|+|+|+ .|.|-+|||++|++.+.-.++|...|++++|.
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred ceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec
Confidence 99999999999999999988888776 467999999884 78999999999999999888988999999998
Q ss_pred ccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcC
Q 012410 270 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 347 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~ 347 (464)
++ |..+++|+.|..-||||+++|.|+.+|.||...|.+|+|||+|..||||| |+|+||||++ -.++.++.+|.+-
T Consensus 313 ~D-GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl-- 389 (459)
T KOG0272|consen 313 PD-GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL-- 389 (459)
T ss_pred CC-CceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch--
Confidence 84 44444578999999999999999999999999999999999999999999 9999999995 6789999999998
Q ss_pred CCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 348 DCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 348 ~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
|..|.|+| -|++|+++|. |+|+|||...+++|+++|.||.+
T Consensus 390 ---VS~Vk~~p~~g~fL~Tasy-----------D~t~kiWs~~~~~~~ksLaGHe~------------------------ 431 (459)
T KOG0272|consen 390 ---VSQVKYSPQEGYFLVTASY-----------DNTVKIWSTRTWSPLKSLAGHEG------------------------ 431 (459)
T ss_pred ---hhheEecccCCeEEEEccc-----------CcceeeecCCCcccchhhcCCcc------------------------
Confidence 78899999 7999999987 99999999999999999999997
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.||.++|||+.|+|+|.|.|+|||.
T Consensus 432 ----------kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 432 ----------KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------ceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999995
No 4
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-42 Score=344.61 Aligned_cols=271 Identities=16% Similarity=0.264 Sum_probs=244.4
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+|...|+.|-|.|+--+.++ +++| .++++||..+|++..+.++|+.. +..|+|+ .-|++||++|
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~----as~d------~tikv~D~~tg~~e~~LrGHt~s----v~di~~~-a~Gk~l~tcS 169 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVS----ASED------ATIKVFDTETGELERSLRGHTDS----VFDISFD-ASGKYLATCS 169 (406)
T ss_pred hccccceeeeeeccCceEEEE----ecCC------ceEEEEEccchhhhhhhhccccc----eeEEEEe-cCccEEEecC
Confidence 348888999999997665555 6677 89999999999998888888864 3389997 7999999999
Q ss_pred CCCcEEEEeCCC-CeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC
Q 012410 206 QDSIYKVFDLKN-YTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 206 ~D~tiKlWdl~t-g~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~ 274 (464)
.|-+++|||..+ ++|++++. .+.|.+|+|-| +.|.|||.|++.||.|+++|.+|..+++.|+-.- + +
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-D-G 247 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-D-G 247 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-C-e
Confidence 999999999987 88888776 57899999955 6889999999999999999998878999998655 3 5
Q ss_pred eEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC---------------CcEEEEEe-CCeEEEEeC-CCceE
Q 012410 275 KLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE---------------NQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 275 ~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd---------------gqllaS~s-D~TIklWd~-~Ge~l 336 (464)
.|++ ++.|.||++|=+.+++|...+++|.+.|..++|-|+ ||.+.++| |+|||+||+ +|.||
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 5555 679999999999999999999999999999988653 57999999 999999999 79999
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
-||.||.+| |..++|+|-|+||+|+.+ |+|+|+||+.+++|++++.+|+.
T Consensus 328 ~tL~ghdnw-----Vr~~af~p~Gkyi~ScaD-----------Dktlrvwdl~~~~cmk~~~ah~h-------------- 377 (406)
T KOG0295|consen 328 FTLVGHDNW-----VRGVAFSPGGKYILSCAD-----------DKTLRVWDLKNLQCMKTLEAHEH-------------- 377 (406)
T ss_pred EEEecccce-----eeeeEEcCCCeEEEEEec-----------CCcEEEEEeccceeeeccCCCcc--------------
Confidence 999999999 899999999999999987 99999999999999999999996
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-|+++.|.-+-..++|||-|+++++|.
T Consensus 378 --------------------fvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 378 --------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --------------------eeEEEecCCCCceEEeccccceeeeee
Confidence 899999999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-41 Score=345.50 Aligned_cols=265 Identities=15% Similarity=0.154 Sum_probs=234.4
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCCcccceeeEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~--g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
|+....++ +++|++++-+|++++|++.+.+.+++| .+|.+.|-.+.|+|. +..||| ++.| ++++|
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat----~s~D------gtvkl 245 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLAT----ASAD------GTVKL 245 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceee----eccC------Cceee
Confidence 44444444 999999999999999999999999999 559999999999998 567888 4556 79999
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE--EecCCCEeEEEEeC-------
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDKHVQEIKIRS------- 236 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~--tl~~~~V~~Vafs~------- 236 (464)
|.+.+-.+++.+.+|.. -+..|+|. |+|++|+++|.|.|.||||+.|++.+. ..+...|.+|+|.|
T Consensus 246 w~~~~e~~l~~l~gH~~----RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLA----RVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred eccCCCcchhhhhcchh----hheeeeec-CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeec
Confidence 99887777665555553 34489996 999999999999999999999999764 55578999999976
Q ss_pred -CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-C
Q 012410 237 -SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-E 314 (464)
Q Consensus 237 -s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-d 314 (464)
+.|..-+|||+.||.|++.|.+|...|.+|+|+|. |-.|++||.|+|+||||++...++.+..+|.+-|+.|.|+| .
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCC-ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 37788999999999999999999999999999993 33444478999999999999999999999999999999998 8
Q ss_pred CcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 315 NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
|++|+|+| |+|+|||.- ++.|+++|.||... |-++.+||||+.|+|++. |.|||||.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k-----V~s~Dis~d~~~i~t~s~-----------DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK-----VISLDISPDSQAIATSSF-----------DRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccc-----eEEEEeccCCceEEEecc-----------Cceeeecc
Confidence 99999999 999999998 69999999999998 899999999999999998 99999995
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-39 Score=314.38 Aligned_cols=285 Identities=14% Similarity=0.178 Sum_probs=232.0
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-----cCCCCCcccceeeccccCceEEEEe
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-----RGKPDSGFALFESESLKWPGFVEFD 194 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-----~G~~~~~~~l~~~~~~~~~~~VaFs 194 (464)
..-++ .+|.++|.+++..+.+..++. | ++-| .++-+|++. .|.+...+.+|+.. +..|+.+
T Consensus 7 l~~tl-~gh~d~Vt~la~~~~~~~~l~-s--asrD------k~ii~W~L~~dd~~~G~~~r~~~GHsH~----v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTL-EGHTDWVTALAIKIKNSDILV-S--ASRD------KTIIVWKLTSDDIKYGVPVRRLTGHSHF----VSDVVLS 72 (315)
T ss_pred eeeee-cCCCceEEEEEeecCCCceEE-E--cccc------eEEEEEEeccCccccCceeeeeeccceE----ecceEEc
Confidence 44467 559999999999998544433 2 4556 799999874 44444344444321 3368887
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC--Ccc
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL--LHR 262 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~--~~~ 262 (464)
+||++..|+|.|+++|+||+++|+....|. +..|.+|+|+| +.|.||||||+- |+|..|+... ..+
T Consensus 73 -~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 73 -SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREW 150 (315)
T ss_pred -cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCc
Confidence 899999999999999999999998876554 67899999987 589999999998 7888888733 578
Q ss_pred eeeEEEEccC-CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 263 NKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 263 ~~~V~F~~~~-~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
|..|.|+|.. +-.|+++|.|+|+|+||+++-++.+.+.||+..+..+++||||.+.+||+ |+.+-|||+ +|+++.+|
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 8999999964 45677789999999999999999999999999999999999999999999 999999999 69999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
+.... |++++|+|+--.|+-+- +.+|||||+.++.|+.+|+---..|..+..
T Consensus 231 ~a~~~------v~sl~fspnrywL~~at------------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~---------- 282 (315)
T KOG0279|consen 231 EAFDI------VNSLCFSPNRYWLCAAT------------ATSIKIWDLESKAVVEELKLDGIGPSSKAG---------- 282 (315)
T ss_pred cCCCe------EeeEEecCCceeEeecc------------CCceEEEeccchhhhhhccccccccccccC----------
Confidence 76543 89999999988887764 677999999999999988654321111110
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+ .-.++|||+||++|++|-.|+.||+|.
T Consensus 283 -----------~~----~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 283 -----------DP----ICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred -----------Cc----EEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 00 567899999999999999999999996
No 7
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.7e-37 Score=281.28 Aligned_cols=274 Identities=16% Similarity=0.287 Sum_probs=237.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L 201 (464)
+.+. +|...|.++.|+|+|+.|++++ .+ +.+.+|++..++....+..+. ..+..+.|+ |+++.|
T Consensus 3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~----~~------g~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~-~~~~~l 66 (289)
T cd00200 3 RTLK-GHTGGVTCVAFSPDGKLLATGS----GD------GTIKVWDLETGELLRTLKGHT----GPVRDVAAS-ADGTYL 66 (289)
T ss_pred hHhc-ccCCCEEEEEEcCCCCEEEEee----cC------cEEEEEEeeCCCcEEEEecCC----cceeEEEEC-CCCCEE
Confidence 4564 5888999999999999999844 35 699999998887543333222 223479997 899999
Q ss_pred EEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~ 271 (464)
++++.|+++++||+.+++.+..+. ...|.+++|+|+ .++.|++||+.+++++..+..+...+..++|.|.
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146 (289)
T ss_pred EEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc
Confidence 999999999999999988887766 347999999873 3899999999999999999865567899999985
Q ss_pred CCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCC
Q 012410 272 FNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPD 348 (464)
Q Consensus 272 ~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~ 348 (464)
+.+++ ++.|+.|++||+++++++..+..|...+.++.|+|+++.+++++ |+.|++||+ .++++..+.+|...
T Consensus 147 --~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--- 221 (289)
T cd00200 147 --GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG--- 221 (289)
T ss_pred --CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc---
Confidence 44555 55699999999999999999999988999999999999999988 999999999 59999999999886
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
+.+++|+|++.++++++. |++|++||+.+++++..+.+|..
T Consensus 222 --i~~~~~~~~~~~~~~~~~-----------~~~i~i~~~~~~~~~~~~~~~~~-------------------------- 262 (289)
T cd00200 222 --VNSVAFSPDGYLLASGSE-----------DGTIRVWDLRTGECVQTLSGHTN-------------------------- 262 (289)
T ss_pred --eEEEEEcCCCcEEEEEcC-----------CCcEEEEEcCCceeEEEccccCC--------------------------
Confidence 889999999999999876 99999999999999999999876
Q ss_pred ccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 429 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+++|+|+++.|++++.|+.|++|+
T Consensus 263 --------~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 263 --------SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 899999999999999999999999997
No 8
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.8e-37 Score=342.26 Aligned_cols=308 Identities=16% Similarity=0.179 Sum_probs=242.8
Q ss_pred CCeEEeeecccccEeeEeec----CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC---cccc
Q 012410 107 SGVCAAFSRETNRRICFLNV----SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS---GFAL 179 (464)
Q Consensus 107 ~g~~~~~~~~~g~~l~~ln~----~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~---~~~l 179 (464)
+|.|++|+..+-+....++. .|.+.|.++.|+|+|+++|+ ++.| ++++||++....... ..+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~lat----gg~D------~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFAT----AGVN------KKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEE----EeCC------CEEEEEECCcccccccccccce
Confidence 67899998665554444432 38899999999999999999 4556 799999975422111 1111
Q ss_pred eeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcC
Q 012410 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIE 248 (464)
Q Consensus 180 ~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~ 248 (464)
.+......+.+++|+++++.+||+++.|++|+|||+.+++++.++. ...|++|+|+| +.|++|+|||+.
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 1111112234799986678999999999999999999999988775 56799999975 368999999999
Q ss_pred CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 249 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 249 tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
+|+++.++.++ ..+.+++|.+.++..+++|+.|++|++||+++++ .+.++.+|...|.++.|+ ++..|+|++ |++|
T Consensus 607 ~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i 684 (793)
T PLN00181 607 QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL 684 (793)
T ss_pred CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence 99999999864 5789999987667778889999999999999876 577889999999999997 788899999 9999
Q ss_pred EEEeCC-------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 327 AVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 327 klWd~~-------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
+|||++ ++++++|.||... ++.++|+|+|++||+|+. |++|+||+..+++.+..+.-
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~-----i~~v~~s~~~~~lasgs~-----------D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNV-----KNFVGLSVSDGYIATGSE-----------TNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCC-----eeEEEEcCCCCEEEEEeC-----------CCEEEEEECCCCCceEEEec
Confidence 999983 3689999999987 789999999999999987 99999999877765544422
Q ss_pred CCC-CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 400 TNC-SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 400 h~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
... ...+. .....-+.|.+|+|+|+|+.|++|+.||+|+||++
T Consensus 749 ~~~~~~~~~----------------------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGL----------------------EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCccccc----------------------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 111 00000 00112237999999999999999999999999985
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=320.77 Aligned_cols=279 Identities=15% Similarity=0.244 Sum_probs=241.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC--CCCcccceeeccccCceEEEEeCCCCc
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~--~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
+.+...+..-|.++.|+++|..|++++ -+ +++++|+...++ +..... ++...+..++|+ |||+
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~----~~------~~i~~~~~~~~~~~~~~~l~----~h~~~v~~~~fs-~d~~ 216 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAAS----SD------GLIRIWKLEGIKSNLLRELS----GHTRGVSDVAFS-PDGS 216 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEcc----CC------CcEEEeecccccchhhcccc----ccccceeeeEEC-CCCc
Confidence 344344466789999999999988843 44 699999997777 433222 233445589998 8999
Q ss_pred EEEEecCCCcEEEEeC-CCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 200 VLTYSAQDSIYKVFDL-KNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl-~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
+|++|+.|++|||||+ ..+.+++++. ...|.+++|+| +.|.+|+|||+++|+|+.+|.+|...+..++|
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 9999999999999999 6779999997 46799999987 58999999999999999999988899999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCc--EEEEcccCCCc--eEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMT--PSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~--~l~~l~gh~~~--v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
.+ ++..|++++.|++|+|||+.+++ |++++.++... ++.+.|+|+|.+|+++. |+++++||+ .++++.++.+|
T Consensus 297 ~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 297 SP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred CC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 88 46778888999999999999999 78888888665 89999999999999999 999999999 59999999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC-CCCCCcccccCCCCCCccccc
Q 012410 343 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT-NCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 343 ~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh-~~~~~~~~~~~~~~~~~~~~~ 421 (464)
.+-+ .| +.+..++++|++|+||+. |++|.+||+.++.-+..+.+| ..
T Consensus 376 ~~~~-~~-~~~~~~~~~~~~i~sg~~-----------d~~v~~~~~~s~~~~~~l~~h~~~------------------- 423 (456)
T KOG0266|consen 376 SNLV-RC-IFSPTLSTGGKLIYSGSE-----------DGSVYVWDSSSGGILQRLEGHSKA------------------- 423 (456)
T ss_pred CCcc-ee-EecccccCCCCeEEEEeC-----------CceEEEEeCCccchhhhhcCCCCC-------------------
Confidence 9863 23 566777999999999997 999999999999999999999 54
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEee--CCCcEEecc
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWS 463 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs--~DgtVrlWd 463 (464)
.|..++++|..+++++++ .|+.|++|.
T Consensus 424 ---------------~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 424 ---------------AVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ---------------ceeccccCCCcCeeeecCcCCCceEEEec
Confidence 788999999999999999 899999996
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.1e-36 Score=294.83 Aligned_cols=278 Identities=12% Similarity=0.177 Sum_probs=244.4
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L 201 (464)
.+| .+|...|.++-|++|.+.|+++| .| ..+-|||--+..-...+++-. .|+-.+||+ |.|+.+
T Consensus 49 r~L-kGH~~Ki~~~~ws~Dsr~ivSaS----qD------GklIvWDs~TtnK~haipl~s----~WVMtCA~s-PSg~~V 112 (343)
T KOG0286|consen 49 RTL-KGHLNKIYAMDWSTDSRRIVSAS----QD------GKLIVWDSFTTNKVHAIPLPS----SWVMTCAYS-PSGNFV 112 (343)
T ss_pred EEe-cccccceeeeEecCCcCeEEeec----cC------CeEEEEEcccccceeEEecCc----eeEEEEEEC-CCCCeE
Confidence 577 55999999999999999999955 44 577799987776554444433 577799997 999999
Q ss_pred EEecCCCcEEEEeCCCC--e----EEEEec--CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeCCcceeeE
Q 012410 202 TYSAQDSIYKVFDLKNY--T----MLYSIS--DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg--~----~l~tl~--~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V 266 (464)
|.|+-|...-|+++++- + .-+.|. +..+.++.|-+ +.|.|.-+||||+|+.++.|.+|..-|.++
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 99999999999999965 1 223454 45688888844 699999999999999999999998999999
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCC
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 344 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~ 344 (464)
+++|-++..+++|+-|++.+|||++.+.|.+++.||..-|.+|.|-|+|.-|+||| |+|.|++|++ .+.+..|+.. +
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~ 271 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-S 271 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-c
Confidence 99996567788899999999999999999999999999999999999999999999 9999999995 8888888843 3
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
- .|.|++|+||-.|++|.+|.. |.++++||...|+-+.+|.||.+
T Consensus 272 ~--~~gitSv~FS~SGRlLfagy~-----------d~~c~vWDtlk~e~vg~L~GHeN---------------------- 316 (343)
T KOG0286|consen 272 I--ICGITSVAFSKSGRLLFAGYD-----------DFTCNVWDTLKGERVGVLAGHEN---------------------- 316 (343)
T ss_pred c--cCCceeEEEcccccEEEeeec-----------CCceeEeeccccceEEEeeccCC----------------------
Confidence 2 355999999999999999986 99999999999999999999998
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|..+|||.-++|||-|.++|||.
T Consensus 317 ------------RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 317 ------------RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------------eeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999994
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-36 Score=304.93 Aligned_cols=287 Identities=13% Similarity=0.137 Sum_probs=243.9
Q ss_pred eeeeecCCCCCcccchhhhccccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEE
Q 012410 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSL 144 (464)
Q Consensus 67 ~~~~~~~~~~~~~~~l~~l~~~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l 144 (464)
.+++-+=|+-++.+-|.. -+++|..+.+- --+++++++++++++||..||++...|. +|.+-|.+|.|.--|++|
T Consensus 89 ~~~~~wipRp~l~~~l~g--~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l 165 (406)
T KOG0295|consen 89 RTPALWIPRPNLVQKLAG--HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYL 165 (406)
T ss_pred cChhhcCCCCCchhhhhc--cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEE
Confidence 344556677777777776 66777777776 5567777799999999999999999995 577779999999999999
Q ss_pred EEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE
Q 012410 145 ITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 223 (464)
Q Consensus 145 ~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t 223 (464)
|+.| .| -++++||..+ -++......++.. +.+|+|= |.|.+|+|++.|.|||.|++.||-|+|+
T Consensus 166 ~tcS----sD------l~~~LWd~~~~~~c~ks~~gh~h~----vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 166 ATCS----SD------LSAKLWDFDTFFRCIKSLIGHEHG----VSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred EecC----Cc------cchhheeHHHHHHHHHHhcCcccc----eeeEEEE-ecCCeeeecccccceeEEecccceeEEe
Confidence 9944 55 2488999754 3333322333321 2389997 8999999999999999999999999999
Q ss_pred ec--CCCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-------------C-CeEEEE
Q 012410 224 IS--DKHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-------------N-EKLLVK 279 (464)
Q Consensus 224 l~--~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-------------~-~~lla~ 279 (464)
+. .++|..|+.+ .+.|.+|++|-+++++|...|+.|.|.+.+|+|.|.. + ..+.++
T Consensus 231 ~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 98 4689999984 4689999999999999999999888999999997741 1 245558
Q ss_pred eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEEC
Q 012410 280 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYIT 357 (464)
Q Consensus 280 s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafS 357 (464)
|.|+|||+||+.+|.|+-+|.||.++|+.++|+|.|++|+|.. |+|+++||+ +++|.++++.|... |.++.|.
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-----vt~lDfh 385 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-----VTSLDFH 385 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-----eEEEecC
Confidence 8999999999999999999999999999999999999999999 999999999 69999999999998 8999999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 358 SDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 358 pDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
-+-.++++|+- |+++|+|.
T Consensus 386 ~~~p~VvTGsV-----------dqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSV-----------DQTVKVWE 404 (406)
T ss_pred CCCceEEeccc-----------cceeeeee
Confidence 99999999997 99999996
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-36 Score=324.62 Aligned_cols=223 Identities=16% Similarity=0.241 Sum_probs=205.5
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCe--------EE-----------------------EEe--cCCCEeEEEEeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--------ML-----------------------YSI--SDKHVQEIKIRS 236 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--------~l-----------------------~tl--~~~~V~~Vafs~ 236 (464)
+.+|| +|+..||.|=.|..|++|.+..-+ -+ +++ +.+.|.++.|+|
T Consensus 383 ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 383 CAEFS-DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eEeec-CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 79998 799999999999999999987421 11 112 246799999988
Q ss_pred --------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEE
Q 012410 237 --------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 308 (464)
Q Consensus 237 --------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~s 308 (464)
++|.+|+||++.|-.|+....+|..+||.|+|+|. |=++|++|.|+|.+||....-+.++++.||..-|.+
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~c 540 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDC 540 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhcccccccce
Confidence 58999999999999999999999999999999984 556677899999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 309 FIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 309 v~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
+.|.|+..++|||| |+|||+||+ +|.+++.|.||... |.+|+|||+|.+||||+. ||.|+||
T Consensus 541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~-----V~al~~Sp~Gr~LaSg~e-----------d~~I~iW 604 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP-----VTALAFSPCGRYLASGDE-----------DGLIKIW 604 (707)
T ss_pred EEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc-----eEEEEEcCCCceEeeccc-----------CCcEEEE
Confidence 99999999999999 999999999 79999999999998 899999999999999987 9999999
Q ss_pred eCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 387 SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 387 di~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|+.+|+.+.++.+|++ .|.||.||.||..||+|+.|.+|+|||.
T Consensus 605 Dl~~~~~v~~l~~Ht~----------------------------------ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 605 DLANGSLVKQLKGHTG----------------------------------TIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EcCCCcchhhhhcccC----------------------------------ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999999987 8999999999999999999999999984
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=313.48 Aligned_cols=228 Identities=19% Similarity=0.344 Sum_probs=207.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEec--CCCEeEEEEeCC--------CceeEEEEEc-CCCcEEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIRSS--------SHVPLKILSI-EDGTVLKVF 256 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi-~tG~~l~tl 256 (464)
.+.|+ |||+.|++++.|+++++|++.+++ +++++. ...|.+++|+|+ .|++|||||+ +.|.++++|
T Consensus 164 ~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l 242 (456)
T KOG0266|consen 164 CVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL 242 (456)
T ss_pred EEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence 69998 899999999999999999998888 777774 568999999884 7999999999 677999999
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE 334 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge 334 (464)
.+|...+.+++|+|+ +..+++|+.|++|||||+++|+|++++.+|.+.|.+++|++||++|++++ |++|+|||+ +|+
T Consensus 243 ~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 243 KGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred cCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 988889999999996 46777789999999999999999999999999999999999999999999 999999999 688
Q ss_pred --eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCC
Q 012410 335 --LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 412 (464)
Q Consensus 335 --~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~ 412 (464)
|+.++.+|....+ ++++.|+|+|++|++++. |+++++||+..++|+.++.+|.+.+
T Consensus 322 ~~~~~~~~~~~~~~~---~~~~~fsp~~~~ll~~~~-----------d~~~~~w~l~~~~~~~~~~~~~~~~-------- 379 (456)
T KOG0266|consen 322 KLCLKLLSGAENSAP---VTSVQFSPNGKYLLSASL-----------DRTLKLWDLRSGKSVGTYTGHSNLV-------- 379 (456)
T ss_pred eeeeecccCCCCCCc---eeEEEECCCCcEEEEecC-----------CCeEEEEEccCCcceeeecccCCcc--------
Confidence 7899999987532 899999999999999987 9999999999999999999998610
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..+.+..++++|+.|+||+.|+.|++||.
T Consensus 380 -----------------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 380 -----------------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred -----------------------eeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 15667778999999999999999999983
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-36 Score=319.16 Aligned_cols=297 Identities=16% Similarity=0.185 Sum_probs=243.7
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
-.-++++..++.+.+||..+.+....+-++|++..--=|..|+-+.||+|+ -+ ..+|+.++++-.|. -.
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVAT--Ns--------~~lr~y~~~~~~c~-ii 361 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVAT--NS--------PELRLYTLPTSYCQ-II 361 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEe--CC--------CceEEEecCCCceE-EE
Confidence 344456667778999999999999998788888655567788899999966 22 35677777666552 23
Q ss_pred cceeeccccCceEEE-EeCCCCcEEEEecCCCcEEEEeCCCCeEE------EEecCCCEeEEEEe---------CCCcee
Q 012410 178 ALFESESLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTML------YSISDKHVQEIKIR---------SSSHVP 241 (464)
Q Consensus 178 ~l~~~~~~~~~~~Va-Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l------~tl~~~~V~~Vafs---------~s~d~t 241 (464)
++|+.-++ ++. |+ .|-.|||||-|++++||.++++.+. .+.+.+.|-.|+++ .+.|.|
T Consensus 362 ~GH~e~vl----SL~~~~--~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t 435 (775)
T KOG0319|consen 362 PGHTEAVL----SLDVWS--SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT 435 (775)
T ss_pred eCchhhee----eeeecc--cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce
Confidence 33432222 555 53 7899999999999999999665543 23446789999995 379999
Q ss_pred EEEEEcCCCcE---EEEE------eeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEE
Q 012410 242 LKILSIEDGTV---LKVF------YHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 242 IklWdi~tG~~---l~tl------~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~F 311 (464)
||+|++...+. ...| .-|...+.+|+.+|. ++|++ +|.|+|.|||++.+++++.+|.||.-.||+|.|
T Consensus 436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred EEEecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence 99999964111 1122 124467799999883 55555 889999999999999999999999999999999
Q ss_pred cCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 312 LYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+|..|++||+| |.|||||.+ +..|++||+||... |--+.|-.+|+.|+|++. ||-|||||+.
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a-----Vlra~F~~~~~qliS~~a-----------dGliKlWnik 577 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA-----VLRASFIRNGKQLISAGA-----------DGLIKLWNIK 577 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccce-----eEeeeeeeCCcEEEeccC-----------CCcEEEEecc
Confidence 99999999999 999999999 79999999999987 778999999999999986 9999999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|++|+++|.+|++ .||+++-+|++..++||+.||.|-+|.
T Consensus 578 t~eC~~tlD~H~D----------------------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 578 TNECEMTLDAHND----------------------------------RVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred chhhhhhhhhccc----------------------------------eeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999998 999999999999999999999999994
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-35 Score=312.15 Aligned_cols=304 Identities=11% Similarity=0.159 Sum_probs=250.5
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC-C
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-D 174 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-~ 174 (464)
..|-++|++..+|.+++||+..+.+++.| .+|..+|+++.|+|+=.....+| +.+| .++++|++.++.. .
T Consensus 115 ~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~s--g~~D------~~v~vwnl~~~~tcl 185 (775)
T KOG0319|consen 115 PTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLAS--GATD------GTVRVWNLNDKRTCL 185 (775)
T ss_pred CCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheee--cCCC------ceEEEEEcccCchHH
Confidence 33999999999999999999999999999 56999999999999876655533 7777 8999999987665 2
Q ss_pred CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEeEEEE-------------------
Q 012410 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKI------------------- 234 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~~Vaf------------------- 234 (464)
.+.. .|..++.+++|+ +|+..+.|++.|++|-|||+.+++++++++- +.+-++++
T Consensus 186 ~~~~----~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 186 HTMI----LHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred HHHH----hhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 2222 245566699998 8999999999999999999999998877751 11222221
Q ss_pred ------------------e-------------------------------------------------------------
Q 012410 235 ------------------R------------------------------------------------------------- 235 (464)
Q Consensus 235 ------------------s------------------------------------------------------------- 235 (464)
+
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 0
Q ss_pred -----C-------------------------------------CCceeEEEEEcCCCcEE----EEEeeCCcceeeEEEE
Q 012410 236 -----S-------------------------------------SSHVPLKILSIEDGTVL----KVFYHLLHRNKKVDFI 269 (464)
Q Consensus 236 -----~-------------------------------------s~d~tIklWdi~tG~~l----~tl~~~~~~~~~V~F~ 269 (464)
| +.|++++||-++++.+. +..++|.+.+-.|+++
T Consensus 341 VATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred EEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeec
Confidence 0 14667888876555433 2334666777888886
Q ss_pred ccCCCeEEEEeCCCeEEEEECCCCc---------EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 270 EQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv~tg~---------~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.-....++++|.|.|||+|++...+ |.-+-..|...|.+|+.+|+.++|||+| |+|.|||++ +++++.+
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence 5434567778999999999987632 2224567889999999999999999999 999999999 6999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
|.||.-. ||+|.|+|..++||++|. |+|||||.|.+..|++||.||++
T Consensus 501 LsGH~RG-----vw~V~Fs~~dq~laT~Sg-----------D~TvKIW~is~fSClkT~eGH~~---------------- 548 (775)
T KOG0319|consen 501 LSGHTRG-----VWCVSFSKNDQLLATCSG-----------DKTVKIWSISTFSCLKTFEGHTS---------------- 548 (775)
T ss_pred eeCCccc-----eEEEEeccccceeEeccC-----------CceEEEEEeccceeeeeecCccc----------------
Confidence 9999987 999999999999999886 99999999999999999999998
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.-+.|--+|+.|+|++.||.||||+
T Consensus 549 ------------------aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 549 ------------------AVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred ------------------eeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 899999999999999999999999997
No 16
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=309.10 Aligned_cols=263 Identities=16% Similarity=0.237 Sum_probs=225.5
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc-ccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~-~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.++..+-+..+. +..+++ ++++ +++++|+..+|+...+ +.+|+. -+..++|. .-+.+|.|||
T Consensus 206 ~~~~~~~~~q~~--~~~~~~----~s~~------~tl~~~~~~~~~~i~~~l~GH~g----~V~~l~~~-~~~~~lvsgS 268 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKS----GSDD------STLHLWDLNNGYLILTRLVGHFG----GVWGLAFP-SGGDKLVSGS 268 (537)
T ss_pred cCcchhhhheee--cCeEEe----cCCC------ceeEEeecccceEEEeeccCCCC----CceeEEEe-cCCCEEEEEe
Confidence 356778888888 345666 5677 8999999999998655 555543 23389995 3578999999
Q ss_pred CCCcEEEEeCCCCeEEEEec--CCCEeEEEEe------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEE
Q 012410 206 QDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLL 277 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ll 277 (464)
.|.|+||||+.+|+|.+++. ...|+.+.+- .+.|.|||+|++++|++|+++.+|...|++|... +..++
T Consensus 269 ~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lv 345 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLV 345 (537)
T ss_pred cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEE
Confidence 99999999999999999987 4568888773 3699999999999999999999777899999985 37888
Q ss_pred EEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC-ceEEEeccCCCCcCCCCeeEE
Q 012410 278 VKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG-ELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 278 a~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~G-e~l~tl~gH~~~~~~~~v~sv 354 (464)
+|+.|++|++||+.+++|++++.||+.+|.+++|.+. +.+.||+ |++||+||+ ++ +|+.+|.+|..- |+.+
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~-----v~~l 419 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL-----VSSL 419 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc-----cccc
Confidence 8999999999999999999999999999999988777 8899999 999999999 57 799999999997 5444
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc-CCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
...+++|+|++. |++||+||+.+|+|++++++ |..
T Consensus 420 --~~~~~~Lvs~~a-----------D~~Ik~WD~~~~~~~~~~~~~~~~------------------------------- 455 (537)
T KOG0274|consen 420 --LLRDNFLVSSSA-----------DGTIKLWDAEEGECLRTLEGRHVG------------------------------- 455 (537)
T ss_pred --ccccceeEeccc-----------cccEEEeecccCceeeeeccCCcc-------------------------------
Confidence 446899999986 99999999999999999999 544
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|+++++. -..+++++.|+++++||.
T Consensus 456 ---~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 456 ---GVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ---cEEEeecC--cceEEEEecCCeeEEEec
Confidence 78888886 688999999999999984
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.5e-34 Score=273.84 Aligned_cols=271 Identities=11% Similarity=0.179 Sum_probs=228.2
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
=+|+++++|.+|++|+..+|++..++ ..++.-|..+-..|++..||++ .. ..|||+||.+++++ +
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpdk~~LAaa----~~-------qhvRlyD~~S~np~---P 75 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPDKKDLAAA----GN-------QHVRLYDLNSNNPN---P 75 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCCcchhhhc----cC-------CeeEEEEccCCCCC---c
Confidence 47899999999999999999999999 6688889999999999999993 33 68999999999885 3
Q ss_pred ceeec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC--------CCceeEEEEEcC
Q 012410 179 LFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS--------SSHVPLKILSIE 248 (464)
Q Consensus 179 l~~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~--------s~d~tIklWdi~ 248 (464)
..+.+ +.+-+.+|.|- -||+.+.+||.|+|+||||+..-.|.+.+. ...|.+|.+.| +.++-|++||+.
T Consensus 76 v~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred eeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 33322 22445599996 899999999999999999999988877666 57899999987 466789999998
Q ss_pred CCcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc------EEEEcccCCCceEEEEEcCCCcEEEEE
Q 012410 249 DGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE------LMEVSRTEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 249 tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~------~l~~l~gh~~~v~sv~FspdgqllaS~ 321 (464)
+..|-..|- ...-.+.++...| ++.+++++-.-|+..+|++-+++ .++.++.|+..+..+.||||+++||++
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred CCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 877766654 3335568888777 44555555688999999998865 455678899999999999999999999
Q ss_pred e-CCeEEEEeCCC--ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 322 R-NRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 322 s-D~TIklWd~~G--e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
| |.|+|||+.++ ++-..++||+.| ||..+||.||+||++|+. |+++||||+.+|+-++..+
T Consensus 234 ssdktv~iwn~~~~~kle~~l~gh~rW-----vWdc~FS~dg~YlvTass-----------d~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDFFKLELVLTGHQRW-----VWDCAFSADGEYLVTASS-----------DHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred cCCceEEEEecCCceeeEEEeecCCce-----EEeeeeccCccEEEecCC-----------CCceeecccccCceeeecC
Confidence 9 99999999964 455689999999 888999999999999985 9999999999999999999
Q ss_pred cCCC
Q 012410 399 ATNC 402 (464)
Q Consensus 399 gh~~ 402 (464)
||-.
T Consensus 298 gh~K 301 (311)
T KOG0315|consen 298 GHHK 301 (311)
T ss_pred Cccc
Confidence 9964
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-33 Score=298.83 Aligned_cols=319 Identities=13% Similarity=0.135 Sum_probs=255.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
-++|++.-.+|...+|....=.+++.|..+ +..|-.+.||.-|++||..+ +. ..++-+|+.+.-.....+
T Consensus 277 t~~lvvgFssG~f~LyelP~f~lih~LSis-~~~I~t~~~N~tGDWiA~g~--~k-------lgQLlVweWqsEsYVlKQ 346 (893)
T KOG0291|consen 277 TNLLVVGFSSGEFGLYELPDFNLIHSLSIS-DQKILTVSFNSTGDWIAFGC--SK-------LGQLLVWEWQSESYVLKQ 346 (893)
T ss_pred ceEEEEEecCCeeEEEecCCceEEEEeecc-cceeeEEEecccCCEEEEcC--Cc-------cceEEEEEeeccceeeec
Confidence 689999999999999998888899999774 45699999999999999844 22 258889998777665444
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe--------CCCceeEEEEEc
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR--------SSSHVPLKILSI 247 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs--------~s~d~tIklWdi 247 (464)
+.|- ..+.++++| |||+++|+|+.|+.|||||...|-|+.|+. +..|..|.|+ .+-|+||+.||+
T Consensus 347 QgH~----~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 347 QGHS----DRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred cccc----cceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 4333 334489998 999999999999999999999999999998 5679999985 478999999999
Q ss_pred CCCcEEEEEeeCCcce-eeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC
Q 012410 248 EDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~-~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~ 324 (464)
..+.+.+||+...... .+|+--| .|+.+.+|+ +-=.|.+|+++||+++.+|.||..+|.++.|+|+|++|||+| |+
T Consensus 422 kRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred cccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 9999999999652322 5555544 466666665 557899999999999999999999999999999999999999 99
Q ss_pred eEEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 325 TVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 325 TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
|||+||+ . -..+.+|+--.. |.+++|+|||+-||.+.- ||.|.+||++.+.-+.+|.|-.+
T Consensus 501 TVRiW~if~s~~~vEtl~i~sd------vl~vsfrPdG~elaVaTl-----------dgqItf~d~~~~~q~~~IdgrkD 563 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLEIRSD------VLAVSFRPDGKELAVATL-----------DGQITFFDIKEAVQVGSIDGRKD 563 (893)
T ss_pred eEEEEEeeccCceeeeEeeccc------eeEEEEcCCCCeEEEEEe-----------cceEEEEEhhhceeeccccchhh
Confidence 9999998 3 445667764332 789999999999999986 99999999999998888877543
Q ss_pred CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
...+. ...+ .+-+..+..-+..+++.||+||+.|.+|+....|.+++
T Consensus 564 ~~~gR-----------~~~D---~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 564 LSGGR-----------KETD---RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred ccccc-----------cccc---eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 11100 0000 01111112224789999999999999999999999886
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-33 Score=271.17 Aligned_cols=262 Identities=10% Similarity=0.146 Sum_probs=221.6
Q ss_pred cceeehhccCCeEEeeec-----ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC
Q 012410 98 RDIVFALAHSGVCAAFSR-----ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~-----~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~ 172 (464)
-++|..++.|.++-+|+. ..|+..+.+.+ |...|..|..++||++..+ ++-| +++++||+++|+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS----~swD------~~lrlWDl~~g~ 96 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALS----ASWD------GTLRLWDLATGE 96 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEe----cccc------ceEEEEEecCCc
Confidence 688999999999999973 35778888955 9999999999999999888 4456 799999999999
Q ss_pred CCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec----CCCEeEEEEeCC----------C
Q 012410 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKIRSS----------S 238 (464)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~s----------~ 238 (464)
....|.+|+..++ +|+|| ||...|+|||.|+||||||.. |.|.+++. .++|..|.|+|+ .
T Consensus 97 ~t~~f~GH~~dVl----sva~s-~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 97 STRRFVGHTKDVL----SVAFS-TDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred EEEEEEecCCceE----EEEec-CCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence 8766666665555 99998 899999999999999999975 67888886 368999999884 7
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
|+|||+||+.+-++..+|-+|.+.+..|+|+|+ |...++|+.|+.+-|||+..++++.++. |+..|.+++|+|+--.|
T Consensus 171 DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWL 248 (315)
T ss_pred CceEEEEccCCcchhhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeE
Confidence 899999999999999999988899999999994 5556668899999999999999998876 56899999999998888
Q ss_pred EEEeCCeEEEEeC-CCceEEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 319 LTFRNRTVAVWNF-RGELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 319 aS~sD~TIklWd~-~Ge~l~tl~----gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+.+-+..|||||. ++.++.+|. |......+...-++|||+||++|.+|.. |+.|++|.+.
T Consensus 249 ~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t-----------d~~irv~qv~ 313 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT-----------DNVIRVWQVA 313 (315)
T ss_pred eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec-----------CCcEEEEEee
Confidence 7777888999999 688887665 3322111222458999999999999986 9999999874
No 20
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-35 Score=295.86 Aligned_cols=217 Identities=17% Similarity=0.288 Sum_probs=190.6
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE------eCCCceeEEEEEcCCCcEEEEEe
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI------RSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf------s~s~d~tIklWdi~tG~~l~tl~ 257 (464)
+-+..+.++ |+ .++||.-|.||||||.++.+|++.|. ++.|..+.| |.++|.||++||++||++++++-
T Consensus 198 kgVYClQYD--D~-kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 198 KGVYCLQYD--DE-KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred CceEEEEec--ch-hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHh
Confidence 334468774 44 68899999999999999999998876 566877766 77899999999999999999999
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R 332 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~ 332 (464)
||...|--+.|+. +.++++|.|.+|.+||+.+-. |.++|.||-..|..|.|+. ++++|+| |+|||+|+. +
T Consensus 275 hHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 275 HHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTST 349 (499)
T ss_pred hhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccc
Confidence 9888889999965 899999999999999988743 6679999999999997754 5999999 999999999 7
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 412 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~ 412 (464)
++++++|.||.-.+ .+.--.|++++|||. |.||||||++.|.||+.|+||..
T Consensus 350 ~efvRtl~gHkRGI-------AClQYr~rlvVSGSS-----------DntIRlwdi~~G~cLRvLeGHEe---------- 401 (499)
T KOG0281|consen 350 CEFVRTLNGHKRGI-------ACLQYRDRLVVSGSS-----------DNTIRLWDIECGACLRVLEGHEE---------- 401 (499)
T ss_pred eeeehhhhcccccc-------eehhccCeEEEecCC-----------CceEEEEeccccHHHHHHhchHH----------
Confidence 99999999998763 233557999999986 99999999999999999999997
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
-|.++-| |.+.|+||.-||+||+||.
T Consensus 402 ------------------------LvRciRF--d~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 402 ------------------------LVRCIRF--DNKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred ------------------------hhhheee--cCceeeeccccceEEEEec
Confidence 7888999 6788999999999999984
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-32 Score=289.64 Aligned_cols=383 Identities=14% Similarity=0.168 Sum_probs=309.5
Q ss_pred cchhh-hhhccccceeeeecCCCCCcc-cchhhhccc------cceEEEEec--cceeehhccCCeEEeeecccccE--e
Q 012410 54 SNAQE-RFRNMHLVEEYDTHDPKGHCP-FVLPFLMKR------TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRR--I 121 (464)
Q Consensus 54 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~------s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~--l 121 (464)
.++|. +|=-++....-.+|..++.++ .+.||.+.| ..+..+-.. .++|.+.+.|-..++|++...+. .
T Consensus 103 ~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~ 182 (893)
T KOG0291|consen 103 KFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT 182 (893)
T ss_pred EECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce
Confidence 44454 333445555556777777776 667776655 345556555 78999999999999999888777 5
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCCCCC--------------------cccc
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDS--------------------GFAL 179 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~--------------------~~~l 179 (464)
+.|+ +|.+.|-+-||..|...|.+||.+| .+-+|... -++... +-+.
T Consensus 183 ~~l~-gHkd~VvacfF~~~~~~l~tvskdG----------~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~ 251 (893)
T KOG0291|consen 183 YALN-GHKDYVVACFFGANSLDLYTVSKDG----------ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKI 251 (893)
T ss_pred Eecc-CCCcceEEEEeccCcceEEEEecCc----------eEEEEEecCCCcccccccccccccccccccccchhhhcce
Confidence 5674 4889999999999999999988443 56666553 111111 0010
Q ss_pred ee--------eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCCCc---------e
Q 012410 180 FE--------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSSSH---------V 240 (464)
Q Consensus 180 ~~--------~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s~d---------~ 240 (464)
+- .+.-.-+.+.+|. +.-.+||.|=..+...|+++..-.|++.|+ +..|..++|+..+| +
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klg 330 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLG 330 (893)
T ss_pred EEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccc
Confidence 10 0000123378896 888999999999999999999999999877 68999999985433 5
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEE
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 320 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS 320 (464)
.+-+|+.++-..+...++|..++.+++++| |++.|++|++|+.|||||.++|-|+.|+..|+..|.+|.|+-.|+.++|
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEE
Confidence 789999998877777778888999999999 4667777899999999999999999999999999999999999999999
Q ss_pred Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 321 FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 321 ~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+| |||||.||+ ++.+-+||..-..- .-..|+.-|.|.++..|+. .-=-|.+|+++|||.+-.|.
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~----QfscvavD~sGelV~AG~~----------d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPI----QFSCVAVDPSGELVCAGAQ----------DSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCce----eeeEEEEcCCCCEEEeecc----------ceEEEEEEEeecCeeeehhc
Confidence 99 999999999 79999999877653 2567888999999999876 13569999999999999999
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccc-----ccc---CEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE-----ALE---DITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~---~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
||.+++.+..+++.++++||.+.+++.++|+.... .++ .|.+|+|+|||++||.+.-||.|.+||
T Consensus 476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 99998888899999999999999999999986653 333 899999999999999999999999998
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-33 Score=301.29 Aligned_cols=237 Identities=13% Similarity=0.174 Sum_probs=201.0
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC---------CC--------------ccccee-eccc
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP---------DS--------------GFALFE-SESL 185 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~---------~~--------------~~~l~~-~~~~ 185 (464)
..+.+..||+|+..||- +-.| -.|++|.+..-++ .. -....+ ....
T Consensus 379 ~~v~ca~fSddssmlA~----Gf~d------S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLAC----GFVD------SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred CcceeEeecCCcchhhc----cccc------cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 45899999999998777 3344 5788887753221 00 000001 0134
Q ss_pred cCce---EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe--cCCCEeEEEEeC--------CCceeEEEEEcCCCcE
Q 012410 186 KWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIRS--------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 186 ~~~~---~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl--~~~~V~~Vafs~--------s~d~tIklWdi~tG~~ 252 (464)
+|.| .+.|+ |+-++|.|||.|+|+|||.+.|-.|+-.. +..+||.|.|+| +.|+|.+||+...-..
T Consensus 449 GH~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 449 GHSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred cCCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 4544 79998 89999999999999999999999998544 467899999987 6999999999999999
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
++.|.+|+.-|.+|+|.|. ..++++||.|+|+|+||+.+|.+++.+.||..+|.+++|||+|++||||+ |+.|+|||+
T Consensus 528 lRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 9999999899999999994 45777799999999999999999999999999999999999999999999 999999999
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
.|+++..|.||++- |.++.||.||..||||+. |.+|++||+..-.+.
T Consensus 607 ~~~~~v~~l~~Ht~t-----i~SlsFS~dg~vLasgg~-----------DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGT-----IYSLSFSRDGNVLASGGA-----------DNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCcchhhhhcccCc-----eeEEEEecCCCEEEecCC-----------CCeEEEEEchhhccc
Confidence 79999999999776 899999999999999987 999999999766555
No 23
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.1e-35 Score=291.15 Aligned_cols=256 Identities=15% Similarity=0.267 Sum_probs=210.5
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCc
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~t 209 (464)
.-|++|-|-- +.+++ |.-| +||+|||...-++...+.+|+..++ .+.| |.++|+|||.|.|
T Consensus 198 kgVYClQYDD--~kiVS----GlrD------nTikiWD~n~~~c~~~L~GHtGSVL----CLqy---d~rviisGSSDsT 258 (499)
T KOG0281|consen 198 KGVYCLQYDD--EKIVS----GLRD------NTIKIWDKNSLECLKILTGHTGSVL----CLQY---DERVIVSGSSDST 258 (499)
T ss_pred CceEEEEecc--hhhhc----cccc------CceEEeccccHHHHHhhhcCCCcEE----eeec---cceEEEecCCCce
Confidence 4577776643 55555 5556 8999999877777544443332222 4555 5689999999999
Q ss_pred EEEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcCCCc---EEEEEeeCCcceeeEEEEccCCCeEEE
Q 012410 210 YKVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIEDGT---VLKVFYHLLHRNKKVDFIEQFNEKLLV 278 (464)
Q Consensus 210 iKlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~tG~---~l~tl~~~~~~~~~V~F~~~~~~~lla 278 (464)
|+|||++||+|++++- .+.|..+.|+. +.|.+|.+||+..-. |.+.|.+|...|..|+|.. .+|++
T Consensus 259 vrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVs 335 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVS 335 (499)
T ss_pred EEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEE
Confidence 9999999999999875 68899999965 699999999986433 3345667778889999944 57777
Q ss_pred EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEE
Q 012410 279 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYI 356 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svaf 356 (464)
+|.|.|||+|++.|++|++++.||.-.+-. .-|.|++++||| |.||+|||+ .|.|++.|+||..- |..|-|
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIAC--lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL-----vRciRF 408 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----VRCIRF 408 (499)
T ss_pred ecCCceEEEEeccceeeehhhhccccccee--hhccCeEEEecCCCceEEEEeccccHHHHHHhchHHh-----hhheee
Confidence 899999999999999999999999855533 469999999999 999999999 59999999999987 778888
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---------EEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---------CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~---------cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
|.+.|+||.. ||+||+||+.++. |+.++-.|++
T Consensus 409 --d~krIVSGaY-----------DGkikvWdl~aaldpra~~~~~Cl~~lv~hsg------------------------- 450 (499)
T KOG0281|consen 409 --DNKRIVSGAY-----------DGKIKVWDLQAALDPRAPASTLCLRTLVEHSG------------------------- 450 (499)
T ss_pred --cCceeeeccc-----------cceEEEEecccccCCcccccchHHHhhhhccc-------------------------
Confidence 7899999987 9999999998865 7888888876
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|..|-| |--.|+|.+.|.||-+||
T Consensus 451 ---------RVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 451 ---------RVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred ---------eeEEEee--cceEEEeccCCCeEEEEE
Confidence 8999999 567899999999999998
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-33 Score=279.83 Aligned_cols=282 Identities=15% Similarity=0.194 Sum_probs=240.2
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L 201 (464)
..+ .+|..||+||++.|-++.+++ ++.| +|++|||+++|++..+.++|... +..|+|| +---+|
T Consensus 145 rVi-~gHlgWVr~vavdP~n~wf~t----gs~D------rtikIwDlatg~LkltltGhi~~----vr~vavS-~rHpYl 208 (460)
T KOG0285|consen 145 RVI-SGHLGWVRSVAVDPGNEWFAT----GSAD------RTIKIWDLATGQLKLTLTGHIET----VRGVAVS-KRHPYL 208 (460)
T ss_pred hhh-hhccceEEEEeeCCCceeEEe----cCCC------ceeEEEEcccCeEEEeecchhhe----eeeeeec-ccCceE
Confidence 345 459999999999999999999 7788 99999999999997666655432 2389998 678899
Q ss_pred EEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~ 271 (464)
-|++.|++||-|||+..+.++..++ ..|++++..| +.|.++|+||+.|-..+.+|.+|...|.+|.|.|
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~- 287 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP- 287 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-
Confidence 9999999999999998887755543 5688888766 5889999999999999999998888999999988
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCC
Q 012410 272 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 272 ~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~ 350 (464)
.+.+++++|.|.||+|||++.|+.+.++..|...|++++..|.-.+|||+|-..||-|++ .|+.++.|.||..-
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~i----- 362 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAI----- 362 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccce-----
Confidence 478999999999999999999999999999999999999999999999999446999999 89999999999886
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 430 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (464)
+++++...||-+ ++|++ .|+|-.||..+|-+.+.++.--. |...+
T Consensus 363 intl~~nsD~v~-~~G~d-----------ng~~~fwdwksg~nyQ~~~t~vq-pGSl~---------------------- 407 (460)
T KOG0285|consen 363 INTLSVNSDGVL-VSGGD-----------NGSIMFWDWKSGHNYQRGQTIVQ-PGSLE---------------------- 407 (460)
T ss_pred eeeeeeccCceE-EEcCC-----------ceEEEEEecCcCccccccccccc-CCccc----------------------
Confidence 899999988754 56665 89999999999988776533221 11000
Q ss_pred ccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 431 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 431 ~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
--..|++-+|+..|..|+||..|.+|++|.
T Consensus 408 ---sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 408 ---SEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ---cccceeEEeecccCceEEeccCCcceEEEe
Confidence 001799999999999999999999999995
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=268.56 Aligned_cols=227 Identities=13% Similarity=0.179 Sum_probs=202.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCC-----
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDG----- 250 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG----- 250 (464)
+-+.++.|+ +|.+.|+|+|+|+.+-|||..|.+..+-++ ..||+.+||+|+ -|..--|+++.+-
T Consensus 56 ~Ki~~~~ws-~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 56 NKIYAMDWS-TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred cceeeeEec-CCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence 344488997 899999999999999999999988877554 899999999995 4555667777643
Q ss_pred -cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEE
Q 012410 251 -TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVA 327 (464)
Q Consensus 251 -~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIk 327 (464)
..-+.|.+|..-+.+..|.. +++|+++|.|.|.-+||+++|+.++.+.||.+-|.+++++| ++++|+|++ |++.|
T Consensus 135 ~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred ceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 34456888878889999977 48999999999999999999999999999999999999999 999999999 99999
Q ss_pred EEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 328 VWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 328 lWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
|||+ .|.|+++|+||..- ||+|.|-|+|.-+|+||+ |+|.||+|+...+-++.++..+.
T Consensus 213 lWD~R~~~c~qtF~ghesD-----INsv~ffP~G~afatGSD-----------D~tcRlyDlRaD~~~a~ys~~~~---- 272 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESD-----INSVRFFPSGDAFATGSD-----------DATCRLYDLRADQELAVYSHDSI---- 272 (343)
T ss_pred eeeccCcceeEeecccccc-----cceEEEccCCCeeeecCC-----------CceeEEEeecCCcEEeeeccCcc----
Confidence 9999 59999999999987 899999999999999997 99999999999999999864332
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+ ..|+||+||--|+.|..|..|.++.|||
T Consensus 273 -~---------------------------~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 273 -I---------------------------CGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred -c---------------------------CCceeEEEcccccEEEeeecCCceeEee
Confidence 1 2899999999999999999999999998
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=270.60 Aligned_cols=277 Identities=13% Similarity=0.150 Sum_probs=235.0
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC--cccceeeccccCceEEEEeCCC
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS--GFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~--~~~l~~~~~~~~~~~VaFs~pd 197 (464)
++..+ .+|...|....|+|+|..+|| ++.| |+|-||++ -|++.. ..++|. +-+-.|.|. +|
T Consensus 39 p~m~l-~gh~geI~~~~F~P~gs~~aS----gG~D------r~I~LWnv-~gdceN~~~lkgHs----gAVM~l~~~-~d 101 (338)
T KOG0265|consen 39 PIMLL-PGHKGEIYTIKFHPDGSCFAS----GGSD------RAIVLWNV-YGDCENFWVLKGHS----GAVMELHGM-RD 101 (338)
T ss_pred hhhhc-CCCcceEEEEEECCCCCeEee----cCCc------ceEEEEec-cccccceeeecccc----ceeEeeeec-cC
Confidence 44455 678899999999999999999 7788 99999994 455532 223332 223369997 89
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE---------eCCCceeEEEEEcCCCcEEEEEeeCCcceeeE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI---------RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf---------s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V 266 (464)
|..|.|++.|++++.||+++|++.+.+. ..-|.++.- |.+.|+|+||||+.+-+++++++.. -.+.+|
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-yqltAv 180 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-YQLTAV 180 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc-eeEEEE
Confidence 9999999999999999999999998766 344565553 3479999999999999999999632 456899
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC----C-ceEEEec
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----G-ELVTSFE 340 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~----G-e~l~tl~ 340 (464)
.|.- ..+++.+|+-|+.||+||++.++++.++.||.++|..+..||+|..++|-+ |.||++||++ + .|++.|+
T Consensus 181 ~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~ 259 (338)
T KOG0265|consen 181 GFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ 259 (338)
T ss_pred Eecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee
Confidence 9965 578999999999999999999999999999999999999999999999999 9999999962 4 4799999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
||..-. .-+.-.+++||++..+..||. |..+.+||..+-.++.+|.||..
T Consensus 260 g~~hnf-eknlL~cswsp~~~~i~ags~-----------dr~vyvwd~~~r~~lyklpGh~g------------------ 309 (338)
T KOG0265|consen 260 GHIHNF-EKNLLKCSWSPNGTKITAGSA-----------DRFVYVWDTTSRRILYKLPGHYG------------------ 309 (338)
T ss_pred cchhhh-hhhcceeeccCCCCccccccc-----------cceEEEeecccccEEEEcCCcce------------------
Confidence 998632 123557899999999999886 99999999988899999999997
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.|..++|+|.-.+|.|++.|++|.|
T Consensus 310 ----------------svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 310 ----------------SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ----------------eEEEeeecCCCcEEEEeccCceeEe
Confidence 8999999999999999999999976
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-32 Score=282.28 Aligned_cols=272 Identities=13% Similarity=0.198 Sum_probs=231.3
Q ss_pred eecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEecc--CCCCC-----------cccceeeccccCce
Q 012410 124 LNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDS-----------GFALFESESLKWPG 189 (464)
Q Consensus 124 ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~--G~~~~-----------~~~l~~~~~~~~~~ 189 (464)
+.. |...|-+-++||--+ .|++ ++.+ -+.++|+|.. +.+.. +...+. .+-+.
T Consensus 174 vl~-~~~~V~~~~WnP~~~~llas----g~~~------s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~---nkdVT 239 (524)
T KOG0273|consen 174 VLR-HESEVFICAWNPLRDGLLAS----GSGD------STARIWNLLENSNIGSTQLVLRHCIREGGKSVPS---NKDVT 239 (524)
T ss_pred ecc-CCCceEEEecCchhhhhhhc----cCCc------cceeeeeehhhccccchhhhhhhhhhhhcccCCc---cCCcc
Confidence 434 888899999999888 6666 5555 6888999864 22210 011111 23344
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
+++++ -+|..||+|+.||.+|+|+ ++|.++.+|. .++|.+|+++. +-|+|+-|||..+|++-+.|+.+
T Consensus 240 ~L~Wn-~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 240 SLDWN-NDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred eEEec-CCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 89997 7999999999999999999 4888888887 57899999954 57899999999999999999865
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEE
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT 337 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~ 337 (464)
...--.|+|.. +..+++++.|+.|+++-+.-...+.++.||.+.|.++-|.|.|++|||+| |+|+|||+. ++.+.+
T Consensus 318 s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 318 SAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred cCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 45546777765 47889999999999999999999999999999999999999999999999 999999998 799999
Q ss_pred EeccCCCCcCCCCeeEEEECCCC---------CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQ---------DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg---------~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
.|.+|..- |.++.+||+| ..||+++. |.|||+||+..|+|+++|..|+.
T Consensus 396 ~l~~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~-----------dstV~lwdv~~gv~i~~f~kH~~------ 453 (524)
T KOG0273|consen 396 DLQAHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASF-----------DSTVKLWDVESGVPIHTLMKHQE------ 453 (524)
T ss_pred hhhhhccc-----eeeEeecCCCCccCCCcCCceEEEeec-----------CCeEEEEEccCCceeEeeccCCC------
Confidence 99999977 7788899974 57788776 99999999999999999999997
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+|+|||||.+|||||.||.|++|+
T Consensus 454 ----------------------------pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 454 ----------------------------PVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ----------------------------ceEEEEecCCCcEEEecCCCCeeEecc
Confidence 999999999999999999999999997
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-32 Score=279.94 Aligned_cols=295 Identities=14% Similarity=0.142 Sum_probs=243.8
Q ss_pred eeehhccCCeEEeeecccccEeeEe--------------ecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 100 IVFALAHSGVCAAFSRETNRRICFL--------------NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 100 ~l~~l~~~g~~~~~~~~~g~~l~~l--------------n~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
++|....+-+-++|++..+...+.- .+.. .-|.+|++|-+|..||+ ++.+ ..++|
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~n-kdVT~L~Wn~~G~~Lat----G~~~------G~~ri 261 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSN-KDVTSLDWNNDGTLLAT----GSED------GEARI 261 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCcc-CCcceEEecCCCCeEEE----eecC------cEEEE
Confidence 5566666667788876541111111 1222 34899999999999999 6677 89999
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE--ecC------CCEeEEEE-eC
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISD------KHVQEIKI-RS 236 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t--l~~------~~V~~Vaf-s~ 236 (464)
|+ ..|.+..++.-| -+.+.++.++ -.|.+|+|++-|+|+-|||..+|++... ++. +|+....| ++
T Consensus 262 w~-~~G~l~~tl~~H----kgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts 335 (524)
T KOG0273|consen 262 WN-KDGNLISTLGQH----KGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATS 335 (524)
T ss_pred Ee-cCchhhhhhhcc----CCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeec
Confidence 99 566655443333 3556699997 8999999999999999999999998754 442 34445555 56
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN- 315 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg- 315 (464)
+.|+.|.+.-+.--++.+||.||...|..+.|.|. +..|+++|+|+|+|||.+..+.|.+.|.+|...++++-+||+|
T Consensus 336 ~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 336 STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred CCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 88999999999888899999988889999999885 4444557899999999999999999999999999999999975
Q ss_pred --------cEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 316 --------QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 316 --------qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
-.+|+++ |.|||+||+ +|.|+.+|.+|+.. |.+|+|||||++||||+. ||.|.|
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-----VysvafS~~g~ylAsGs~-----------dg~V~i 478 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-----VYSVAFSPNGRYLASGSL-----------DGCVHI 478 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-----eEEEEecCCCcEEEecCC-----------CCeeEe
Confidence 4688888 999999999 79999999999988 899999999999999998 999999
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|++++|+..+.+++.. .|..|.|+.+|..|.-.-.||.|.|=|
T Consensus 479 ws~~~~~l~~s~~~~~-----------------------------------~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQGTG-----------------------------------GIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred ccccchheeEeecCCC-----------------------------------eEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 9999999999987754 799999999999999999999998865
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.2e-31 Score=244.23 Aligned_cols=266 Identities=16% Similarity=0.250 Sum_probs=228.8
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|..+.+. +++|++...+|.+.+|+..+++.+..+. .|...+.++.|+|+++.+++++ .+ ..+++|
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~----~~------~~i~i~ 78 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGS----SD------KTIRLW 78 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEc----CC------CeEEEE
Confidence 455555555 6899999999999999998888888874 4778899999999999898844 45 699999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
++..++....+..+. ..+..++|+ |++++|++++.|+.+++||+.+++++..+. ...|..++|+|+
T Consensus 79 ~~~~~~~~~~~~~~~----~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 79 DLETGECVRTLTGHT----SYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred EcCcccceEEEeccC----CcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence 998877654333222 234589997 789999999989999999999999988876 456999999883
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
.++.|++||+.+++++..+..+...+..++|+|. +..+++++.|+.|++||+.+++++..+..|...+.++.|+|++.
T Consensus 154 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred cCCCcEEEEEccccccceeEecCccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc
Confidence 3899999999999999999866567899999884 55788888899999999999999999989999999999999999
Q ss_pred EEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 317 LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 317 llaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
++++++ |++|++||+ +++++..+.+|... +.+++|+|++++|++++. |++|++||
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~-----------d~~i~iw~ 289 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSA-----------DGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCceeEEEccccCCc-----EEEEEECCCCCEEEEecC-----------CCeEEecC
Confidence 999999 999999999 59999999999876 889999999999999986 99999996
No 30
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=9.7e-33 Score=297.06 Aligned_cols=268 Identities=15% Similarity=0.224 Sum_probs=227.8
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeE-eecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~-ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~ 172 (464)
-++-.+.+.+.+.++++++|+..+++.+.. + .+|..-||+++|..-++.|++ ++.| +|+++||+.+|+
T Consensus 214 ~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~~~~lvs----gS~D------~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 214 LQLHDGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSGGDKLVS----GSTD------KTERVWDCSTGE 282 (537)
T ss_pred heeecCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecCCCEEEE----EecC------CcEEeEecCCCc
Confidence 334478899999999999999999999998 8 559999999999987889999 5666 899999999999
Q ss_pred CCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe------CCCceeEEE
Q 012410 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR------SSSHVPLKI 244 (464)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs------~s~d~tIkl 244 (464)
|...+.+|+. .|.-.+-.+..+++||.|.||||||+.+|+++.++. ...|.+|.+. .+.|++|++
T Consensus 283 C~~~l~gh~s-------tv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 283 CTHSLQGHTS-------SVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKV 355 (537)
T ss_pred EEEEecCCCc-------eEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEE
Confidence 9766665553 322223467789999999999999999999999887 5789999884 468899999
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEe-
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~s- 322 (464)
||+.+|+|+++|++|.++|.++.|..- ..+++|+.|++||+||+.++ +|+.++.+|...|..+ ...++.|+|++
T Consensus 356 W~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~a 431 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSA 431 (537)
T ss_pred EEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccc
Confidence 999999999999998899999987331 78888999999999999999 9999999999888654 56788999999
Q ss_pred CCeEEEEeC-CCceEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 323 NRTVAVWNF-RGELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
|++||+||. +|+|++++++ |... |..+++. ...+++++. |++++|||+.+|++++++-.+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~il~s~~-----------~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGG-----VSALALG--KEEILCSSD-----------DGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred cccEEEeecccCceeeeeccCCccc-----EEEeecC--cceEEEEec-----------CCeeEEEecccCchhhhhhhc
Confidence 999999999 7999999999 5444 7777776 456666665 999999999999999988555
Q ss_pred C
Q 012410 401 N 401 (464)
Q Consensus 401 ~ 401 (464)
.
T Consensus 494 ~ 494 (537)
T KOG0274|consen 494 D 494 (537)
T ss_pred c
Confidence 4
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.6e-32 Score=262.59 Aligned_cols=250 Identities=11% Similarity=0.142 Sum_probs=215.3
Q ss_pred cCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE--EEEec--C
Q 012410 151 ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS--D 226 (464)
Q Consensus 151 ~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~--l~tl~--~ 226 (464)
++.| +|||+|...+|.|.++++.-. .+++.++.. ||++.||.|+.- .|||+|+.+++. +.++. .
T Consensus 16 A~YD------hTIRfWqa~tG~C~rTiqh~d----sqVNrLeiT-pdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 16 AGYD------HTIRFWQALTGICSRTIQHPD----SQVNRLEIT-PDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred ccCc------ceeeeeehhcCeEEEEEecCc----cceeeEEEc-CCcchhhhccCC-eeEEEEccCCCCCceeEEeccC
Confidence 6788 999999999999988776433 566699997 899999977655 699999998775 55554 6
Q ss_pred CCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 012410 227 KHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 298 (464)
Q Consensus 227 ~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~ 298 (464)
++|.+|.|- .++|+++||||+..-.|.+.|++. .+|.+|...|. ...|+++-.+|.|++||+.+..|.+.
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCC-cceEEeecCCCcEEEEEccCCccccc
Confidence 899999994 479999999999998899989876 88999998883 46677788999999999999999987
Q ss_pred cccCC-CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 012410 299 SRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 369 (464)
Q Consensus 299 l~gh~-~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~ 369 (464)
+..+. ..+.+++.-|||.+++.+. -|+.-+|++ .+. .+..|+.|... +..+-+|||+++||++|.
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~-----il~C~lSPd~k~lat~ss- 235 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH-----ILRCLLSPDVKYLATCSS- 235 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce-----EEEEEECCCCcEEEeecC-
Confidence 76654 4688999999999999999 899999997 433 35678888887 678889999999999875
Q ss_pred CCccccccCCCCeEEEEeCCCC-eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 370 EPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 370 ~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
|+|+|||++.+= +.-..|+||+. +||..+||.||+
T Consensus 236 ----------dktv~iwn~~~~~kle~~l~gh~r----------------------------------WvWdc~FS~dg~ 271 (311)
T KOG0315|consen 236 ----------DKTVKIWNTDDFFKLELVLTGHQR----------------------------------WVWDCAFSADGE 271 (311)
T ss_pred ----------CceEEEEecCCceeeEEEeecCCc----------------------------------eEEeeeeccCcc
Confidence 999999999887 66778999996 999999999999
Q ss_pred EEEEeeCCCcEEeccC
Q 012410 449 EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 449 ~LaSgs~DgtVrlWd~ 464 (464)
+|+|||.|+++||||.
T Consensus 272 YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 272 YLVTASSDHTARLWDL 287 (311)
T ss_pred EEEecCCCCceeeccc
Confidence 9999999999999985
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-31 Score=299.18 Aligned_cols=224 Identities=10% Similarity=0.119 Sum_probs=194.3
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCCCC----e----EEEEec-CCCEeEEEEeC---------CCceeEEEEEcC
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----T----MLYSIS-DKHVQEIKIRS---------SSHVPLKILSIE 248 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg----~----~l~tl~-~~~V~~Vafs~---------s~d~tIklWdi~ 248 (464)
.+.+|+|+ |||++||+|+.|++|||||+.+. . ...++. ...|.+++|+| +.|++|+|||++
T Consensus 485 ~V~~i~fs-~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 485 LVCAIGFD-RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA 563 (793)
T ss_pred cEEEEEEC-CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence 34489997 89999999999999999997542 1 122232 45688888865 468999999999
Q ss_pred CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEc-CCCcEEEEEe-CCeE
Q 012410 249 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTV 326 (464)
Q Consensus 249 tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs-pdgqllaS~s-D~TI 326 (464)
+++++.++.+|...|++|+|+|.++..|++++.|++|+|||+.+++++.++..| ..+.++.|+ ++|++||+++ |++|
T Consensus 564 ~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I 642 (793)
T PLN00181 564 RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKV 642 (793)
T ss_pred CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeE
Confidence 999999999877899999999866677888999999999999999999998876 578899995 6899999999 9999
Q ss_pred EEEeC-CCc-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC------CeEEEEEc
Q 012410 327 AVWNF-RGE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT------GKCLAKIN 398 (464)
Q Consensus 327 klWd~-~Ge-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t------G~cl~tl~ 398 (464)
++||+ +++ .+.++.+|... |..+.|+ |+.+|+|+|. |++|+|||+.+ ++++.++.
T Consensus 643 ~iwD~~~~~~~~~~~~~h~~~-----V~~v~f~-~~~~lvs~s~-----------D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 643 YYYDLRNPKLPLCTMIGHSKT-----VSYVRFV-DSSTLVSSST-----------DNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred EEEECCCCCccceEecCCCCC-----EEEEEEe-CCCEEEEEEC-----------CCEEEEEeCCCCccccCCcceEEEc
Confidence 99999 455 67899999987 8899997 7899999987 99999999974 47899999
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
||.+ .|..++|+|+|+.||||+.|++|+||+
T Consensus 706 gh~~----------------------------------~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 706 GHTN----------------------------------VKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCCC----------------------------------CeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 9987 889999999999999999999999997
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.6e-31 Score=256.07 Aligned_cols=281 Identities=13% Similarity=0.166 Sum_probs=208.9
Q ss_pred EeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 120 RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
.++.+ .+|.+.+|+|+++|- |.+||+ ++.| ++++||+...|+.......+...+.+-+.+|||+ |.|
T Consensus 6 ~~~~~-~gh~~r~W~~awhp~~g~ilAs----cg~D------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g 73 (312)
T KOG0645|consen 6 LEQKL-SGHKDRVWSVAWHPGKGVILAS----CGTD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHG 73 (312)
T ss_pred eEEee-cCCCCcEEEEEeccCCceEEEe----ecCC------ceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCC
Confidence 44566 458889999999997 778888 7788 9999999765543211111111234555589998 999
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 278 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla 278 (464)
++||+||.|.|+-||.-..+ +=+|+.+|++|-..|++|+|++ +|..|++
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~------------------------------efecv~~lEGHEnEVK~Vaws~-sG~~LAT 122 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDG------------------------------EFECVATLEGHENEVKCVAWSA-SGNYLAT 122 (312)
T ss_pred cEEEEeeccceEEEeecCCC------------------------------ceeEEeeeeccccceeEEEEcC-CCCEEEE
Confidence 99999999999999973322 2467888998878899999999 5777777
Q ss_pred EeCCCeEEEEECCCC---cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-C---ceEEEeccCCCCcCCCC
Q 012410 279 KQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg---~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-G---e~l~tl~gH~~~~~~~~ 350 (464)
.+.|+.|=||.+..+ +|+.+|++|++-|--|+|.|...+|+|+| |.|||+|... + +|+++|.+|.+-
T Consensus 123 CSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T----- 197 (312)
T KOG0645|consen 123 CSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT----- 197 (312)
T ss_pred eeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce-----
Confidence 899999999998854 48889999999999999999999999999 9999999863 3 599999999986
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc-CCC----CCC--cccccCCCCC-Cccccc-
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNC----SPK--VDDELGSSST-GKSKKL- 421 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-h~~----~~~--~~~~~~~~~~-~~~~~~- 421 (464)
||+++|.|+|..|+|++. |+||+||-..+ .+.+ |+. -|. +.+|+..|+. +.-...
T Consensus 198 VW~~~F~~~G~rl~s~sd-----------D~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 198 VWSLAFDNIGSRLVSCSD-----------DGTVSIWRLYT-----DLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKES 261 (312)
T ss_pred EEEEEecCCCceEEEecC-----------CcceEeeeecc-----CcchhcccceEeeeecccceEeccCCCEEEEEEec
Confidence 999999999999999987 99999997432 1111 111 011 2333333321 000000
Q ss_pred ----cccccccc-cccccccCEEEEEEcCC-CCEEEEeeCCCcEEeccC
Q 012410 422 ----NKSSYIRS-TVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 422 ----~~~~~~~~-~~~~~l~~V~slafspD-g~~LaSgs~DgtVrlWd~ 464 (464)
...+++-. ..+.+-..|.+|+|+|. ++.|+||+.||+|++|.+
T Consensus 262 ~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 262 DSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred CCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 01122211 22233349999999995 889999999999999974
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.9e-33 Score=281.60 Aligned_cols=269 Identities=15% Similarity=0.140 Sum_probs=221.7
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
-...|..|-+.|+|+-|+++| +- ....||+... ..|...-..|-.-+.+++++ +||..++||+.|
T Consensus 95 vkc~V~~v~WtPeGRRLltgs----~S------GEFtLWNg~~----fnFEtilQaHDs~Vr~m~ws-~~g~wmiSgD~g 159 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGS----QS------GEFTLWNGTS----FNFETILQAHDSPVRTMKWS-HNGTWMISGDKG 159 (464)
T ss_pred cccceeeEEEcCCCceeEeec----cc------ccEEEecCce----eeHHHHhhhhcccceeEEEc-cCCCEEEEcCCC
Confidence 345689999999999999965 22 4566777411 11111111122334489998 899999999999
Q ss_pred CcEEEEeCCCCeEEEEec---CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 208 SIYKVFDLKNYTMLYSIS---DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
+.||+|+.. -+.++.+. ++.|+++|||| ++|++|||||..-.+.-..|.+|.--|++|++.|. .+.|
T Consensus 160 G~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~-kgLi 237 (464)
T KOG0284|consen 160 GMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT-KGLI 237 (464)
T ss_pred ceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc-ccee
Confidence 999999964 33444333 57899999987 58999999999988888889988678899999996 5677
Q ss_pred EEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEE
Q 012410 277 LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
+++|.|.+||+||.++|+|+.++.+|.+.|.++.|+|++++|+|+| |.++|+.|++ =+.+.++++|..- |+++
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-----v~~~ 312 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-----VTSL 312 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-----heee
Confidence 7789999999999999999999999999999999999999999999 9999999995 7888999999987 8999
Q ss_pred EECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 355 YITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 355 afSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
+++| .-.++.||+. ||.|..|.+...+-+..+ .+|..
T Consensus 313 ~WhP~~~~lftsgg~-----------Dgsvvh~~v~~~~p~~~i~~AHd~------------------------------ 351 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGS-----------DGSVVHWVVGLEEPLGEIPPAHDG------------------------------ 351 (464)
T ss_pred ccccccccceeeccC-----------CCceEEEeccccccccCCCccccc------------------------------
Confidence 9999 5677888775 999999999755655555 34554
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|||++|+|=|++|+|||.|++||.|.
T Consensus 352 ----~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 352 ----EIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ----ceeeeeccccceeEeecCCCcceeeec
Confidence 899999999999999999999999995
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-32 Score=285.48 Aligned_cols=223 Identities=17% Similarity=0.254 Sum_probs=204.5
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
+|.|. |-.-.+..+=..|++-|||.+|.++++++. +.+|++.+|=+ ++|..|++++..|++.+++|+-|
T Consensus 18 sVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 18 SVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence 89996 788888888899999999999999999987 67899999943 78999999999999999999977
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-CCce
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RGEL 335 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~-~Ge~ 335 (464)
..-+++|+-+|. ...+|++|+|-+||+||.+.+ .|.+++.||...|..|+|.| |...|||+| |+|||||.+ +-.+
T Consensus 97 ~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~ 175 (794)
T KOG0276|consen 97 SDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP 175 (794)
T ss_pred ccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC
Confidence 788999999996 568999999999999997765 48899999999999999997 788999999 999999999 7899
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCC--CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCC
Q 012410 336 VTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSS 413 (464)
Q Consensus 336 l~tl~gH~~~~~~~~v~svafSpDg--~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~ 413 (464)
..||+||... ||.|.|=|-| -+|+||++ |.||||||.+|.+|++||.||++
T Consensus 176 nfTl~gHekG-----VN~Vdyy~~gdkpylIsgaD-----------D~tiKvWDyQtk~CV~TLeGHt~----------- 228 (794)
T KOG0276|consen 176 NFTLEGHEKG-----VNCVDYYTGGDKPYLISGAD-----------DLTIKVWDYQTKSCVQTLEGHTN----------- 228 (794)
T ss_pred ceeeeccccC-----cceEEeccCCCcceEEecCC-----------CceEEEeecchHHHHHHhhcccc-----------
Confidence 9999999988 8899887755 59999997 99999999999999999999997
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 414 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
-|..+.|+|.=.+|+|||+|||||||.+
T Consensus 229 -----------------------Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 229 -----------------------NVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred -----------------------cceEEEecCCCcEEEEecCCccEEEecC
Confidence 8999999999999999999999999974
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-31 Score=281.54 Aligned_cols=269 Identities=14% Similarity=0.188 Sum_probs=230.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
+.+.|.||-|.|---.++. |-| + .++-||+..+......+..-.. .+.+..|= +--..++.||.|
T Consensus 12 rSdRVKsVd~HPtePw~la-~Ly---n------G~V~IWnyetqtmVksfeV~~~----PvRa~kfi-aRknWiv~GsDD 76 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILA-ALY---N------GDVQIWNYETQTMVKSFEVSEV----PVRAAKFI-ARKNWIVTGSDD 76 (794)
T ss_pred cCCceeeeecCCCCceEEE-eee---c------CeeEEEecccceeeeeeeeccc----chhhheee-eccceEEEecCC
Confidence 7788999999998776655 333 3 6899999888777655443332 22256664 455689999999
Q ss_pred CcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCC-CcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~t-G~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
..|||++..|++.++++. .+-|++|+.+| ++|.+||+||.+. -.|.++|++|.|-|..|+|.|-|+.++
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntF 156 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTF 156 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccce
Confidence 999999999999999987 56799999977 6899999999985 468899999999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC--CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCee
Q 012410 277 LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp--dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
+++|-|+|||+|.+.+..+.-||.||...|..|.|-| |..+|+||+ |.||||||. +-.|++||+||++- |+
T Consensus 157 aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N-----vs 231 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN-----VS 231 (794)
T ss_pred eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-----ce
Confidence 9999999999999999999999999999999999884 567999999 999999999 69999999999986 89
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
.++|+|.=-+|+|||+ |||+|||+-.|-+...+|+
T Consensus 232 ~v~fhp~lpiiisgsE-----------DGTvriWhs~Ty~lE~tLn---------------------------------- 266 (794)
T KOG0276|consen 232 FVFFHPELPIIISGSE-----------DGTVRIWNSKTYKLEKTLN---------------------------------- 266 (794)
T ss_pred EEEecCCCcEEEEecC-----------CccEEEecCcceehhhhhh----------------------------------
Confidence 9999999999999986 9999999987777666552
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
..+++||+|+-.+.+..++.|.+.|.|-|
T Consensus 267 ~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 267 YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 23459999999999999999999998754
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-31 Score=287.72 Aligned_cols=267 Identities=16% Similarity=0.199 Sum_probs=229.9
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
+....|.+++|.|---.+.+ | --. ..|.+||.+.|-++..|.-|. |.+..|+|. |.+.+.+||+.
T Consensus 7 skSsRvKglsFHP~rPwILt-s---lHs------G~IQlWDYRM~tli~rFdeHd----GpVRgv~FH-~~qplFVSGGD 71 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILT-S---LHS------GVIQLWDYRMGTLIDRFDEHD----GPVRGVDFH-PTQPLFVSGGD 71 (1202)
T ss_pred cccccccceecCCCCCEEEE-e---ecC------ceeeeehhhhhhHHhhhhccC----Cccceeeec-CCCCeEEecCC
Confidence 34567899999998887776 2 222 699999999999876555444 555699996 99999999999
Q ss_pred CCcEEEEeCCCCeEEEEecC--CCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 207 DSIYKVFDLKNYTMLYSISD--KHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
|.+||||+.++-.|++||.+ +.|+.+.|+ +|+|+||+|||.++++|+.+|++|.|-|.+-+|.|- .+.+
T Consensus 72 DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt-EDlI 150 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT-EDLI 150 (1202)
T ss_pred ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc-cceE
Confidence 99999999999999999974 679999994 589999999999999999999999999999999994 5677
Q ss_pred EEEeCCCeEEEEECCC--------C-------------------cE--EEEcccCCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 277 LVKQENENLQILDVRN--------A-------------------EL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 277 la~s~D~tIkIWDv~t--------g-------------------~~--l~~l~gh~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
+++|-|+|||+||+.. | .+ .+++.||.-.|.-++|.|.-.+|+||+ |+.|
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 7789999999999754 1 11 247899999999999999999999999 9999
Q ss_pred EEEeCC-Cc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 327 AVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 327 klWd~~-Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
|+|-.+ -+ .+-|..||.+- |.++-|+|.+++|+|.|+ |++||+||+...+++++++--.+
T Consensus 231 KlWrmnetKaWEvDtcrgH~nn-----Vssvlfhp~q~lIlSnsE-----------DksirVwDm~kRt~v~tfrrend- 293 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNN-----VSSVLFHPHQDLILSNSE-----------DKSIRVWDMTKRTSVQTFRREND- 293 (1202)
T ss_pred eEEEeccccceeehhhhcccCC-----cceEEecCccceeEecCC-----------CccEEEEecccccceeeeeccCC-
Confidence 999983 33 57799999997 889999999999999876 99999999999999999976554
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
.-|-||-+|..+..|.|-+.|.|
T Consensus 294 ---------------------------------RFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 294 ---------------------------------RFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred ---------------------------------eEEEEEecCCcceeeeecCCceE
Confidence 78999999999988877766654
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=1.1e-31 Score=269.14 Aligned_cols=227 Identities=15% Similarity=0.287 Sum_probs=209.8
Q ss_pred ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC--------CCceeEEEEEcCCCcE
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS--------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~--------s~d~tIklWdi~tG~~ 252 (464)
.|++|+.+|+|+ |..+.+++||.|+||||||+++|++..||.+ ..|++|+||+ ..|+.||-||+|..++
T Consensus 149 gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 149 GHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred hccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 478999999996 8889999999999999999999999999884 6799999975 6999999999999999
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
++..-+|++.|.+++..|- -+.|++++.|.++|+||+++..-+.++.||..+|.+|.|.|-.-.++|+| |+||+|||+
T Consensus 228 IR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL 306 (460)
T ss_pred HHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence 9999888999999999884 56788899999999999999999999999999999999998888899999 999999999
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
.|+-..+|..|.-- |.+++.+|....+||+|. ..||-|++..|.-++.|.||+.
T Consensus 307 ~agkt~~tlt~hkks-----vral~lhP~e~~fASas~------------dnik~w~~p~g~f~~nlsgh~~-------- 361 (460)
T KOG0285|consen 307 RAGKTMITLTHHKKS-----VRALCLHPKENLFASASP------------DNIKQWKLPEGEFLQNLSGHNA-------- 361 (460)
T ss_pred ccCceeEeeecccce-----eeEEecCCchhhhhccCC------------ccceeccCCccchhhccccccc--------
Confidence 59999999999876 899999999999999985 4699999999999999999997
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-|.+|+-+.|| .+++|++.|++..||
T Consensus 362 --------------------------iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 362 --------------------------IINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred --------------------------eeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 78899999888 589999999999998
No 39
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=2.1e-30 Score=277.08 Aligned_cols=233 Identities=14% Similarity=0.147 Sum_probs=183.2
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCc
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSH 239 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d 239 (464)
...-++.-..|+.....+++. +|.+.+..|+|+ | |+++||+||.|++|||||+.++.+...
T Consensus 52 g~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fs-P~d~~~LaSgS~DgtIkIWdi~~~~~~~~---------------- 113 (493)
T PTZ00421 52 STAVLKHTDYGKLASNPPILL-GQEGPIIDVAFN-PFDPQKLFTASEDGTIMGWGIPEEGLTQN---------------- 113 (493)
T ss_pred ceEEeeccccccCCCCCceEe-CCCCCEEEEEEc-CCCCCEEEEEeCCCEEEEEecCCCccccc----------------
Confidence 444455556777654434443 244556689998 6 899999999999999999876532110
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
..+++.+|.+|...|..|+|+|..+..|++++.|++|+|||+.+++++..+.+|...|.+++|+|||++||
T Consensus 114 ---------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLa 184 (493)
T PTZ00421 114 ---------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLC 184 (493)
T ss_pred ---------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEE
Confidence 13456677777788999999985445777789999999999999999999999999999999999999999
Q ss_pred EEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEE
Q 012410 320 TFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAK 396 (464)
Q Consensus 320 S~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~t 396 (464)
|++ |++|+|||+ +|+++.++.+|.... +..+.|.|++.+|++++. +.+.|++|+|||+.+.+ ++.+
T Consensus 185 tgs~Dg~IrIwD~rsg~~v~tl~~H~~~~----~~~~~w~~~~~~ivt~G~-------s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 185 TTSKDKKLNIIDPRDGTIVSSVEAHASAK----SQRCLWAKRKDLIITLGC-------SKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EecCCCEEEEEECCCCcEEEEEecCCCCc----ceEEEEcCCCCeEEEEec-------CCCCCCeEEEEeCCCCCCceeE
Confidence 999 999999999 699999999998652 346789999999888764 12458999999998754 5555
Q ss_pred EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEeccC
Q 012410 397 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 397 l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd~ 464 (464)
+..+.. ..+...+|+||++.|++|+ .|++||+||.
T Consensus 254 ~~~d~~---------------------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 254 VDLDQS---------------------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred eccCCC---------------------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 544432 0566789999999999988 5999999984
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.3e-30 Score=257.84 Aligned_cols=353 Identities=15% Similarity=0.181 Sum_probs=268.1
Q ss_pred cCcchhhhhhhcccccccCCccccc--------cchhhhhhccc------cceee-eecCCCCCcccchhhhccccceEE
Q 012410 29 DGFVNSVKKLQRREICSKRDRAFSI--------SNAQERFRNMH------LVEEY-DTHDPKGHCPFVLPFLMKRTKVIE 93 (464)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~l~~l~~~s~v~~ 93 (464)
.+..+-|.||-+.|=+....+.|-. ..-.|--+.-+ |.-|| .-+.|+..+.-+ .....|-.
T Consensus 35 ~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~----~hdDWVSs 110 (423)
T KOG0313|consen 35 YGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQCF----LHDDWVSS 110 (423)
T ss_pred ccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCccccc----cchhhhhh
Confidence 3456778888888877666666522 22222222222 33445 566666655443 34566777
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCE---EEEEEeecCCCCcccceeeEEEEEecc
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDS---LITVSVYASDNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~---l~svSa~~sddfs~L~~~ti~l~~i~~ 170 (464)
+-+++..|.+.+++|+.++|+ ..|+.++++ .+|...|.++++---++. +++ ++.| ++++||-+.-
T Consensus 111 v~~~~~~IltgsYDg~~riWd-~~Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvs----as~D------qtl~Lw~~~~ 178 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWD-LKGKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVS----ASMD------QTLRLWKWNV 178 (423)
T ss_pred hcccCceEEEeecCCeeEEEe-cCCceEEEE-ecCCcceeeeEEEecCCccceEEE----ecCC------ceEEEEEecC
Confidence 777899999999999999999 889999999 569999998887666666 777 5677 9999999988
Q ss_pred CCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC----CceeEEEEE
Q 012410 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS----SHVPLKILS 246 (464)
Q Consensus 171 G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s----~d~tIklWd 246 (464)
|...-....-..+|-+-+.+|+-+ ++|...+|||.|.++|||+..+ ...-++.. +.-.+. ....
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~-----~s~~rrk~~~~~~~----- 246 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVET-DEEDELES-----SSNRRRKKQKREKE----- 246 (423)
T ss_pred chhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCC-Cccccccc-----cchhhhhhhhhhhc-----
Confidence 876321111111222444588886 8999999999999999999432 22112211 000110 1111
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
..+++.+.+|.+|...|.+|.|.+ .+.+.++|.|+|||.||+.+|.++-++.+. ....++..+|...+||+|| |+-
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred ccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCc
Confidence 235888999999999999999987 488899999999999999999999988876 4688999999999999999 999
Q ss_pred EEEEeC-C--CceE-EEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEcc
Q 012410 326 VAVWNF-R--GELV-TSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINA 399 (464)
Q Consensus 326 IklWd~-~--Ge~l-~tl~gH~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~g 399 (464)
|+|||. + |..+ ++|.||.+| |.+|.++|. -..|+|||. |+|+||||+.+-+ .|.+|.+
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~nw-----Vssvkwsp~~~~~~~S~S~-----------D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHKNW-----VSSVKWSPTNEFQLVSGSY-----------DNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred eeecCCCCCCCceeEEeeecchhh-----hhheecCCCCceEEEEEec-----------CCeEEEEEeccCCCcceeecc
Confidence 999997 3 5554 599999999 889999995 567889887 9999999999988 8999999
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|.+ .|.++.++ +|..|+||+.|.+|++..
T Consensus 388 h~D----------------------------------Kvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 388 HND----------------------------------KVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred CCc----------------------------------eEEEEecc-CCceEEeccCcceEEEec
Confidence 987 89999997 677899999999999853
No 41
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.1e-31 Score=272.45 Aligned_cols=283 Identities=14% Similarity=0.198 Sum_probs=243.6
Q ss_pred ccccEeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceeeccccCceEEEE
Q 012410 116 ETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEF 193 (464)
Q Consensus 116 ~~g~~l~~ln~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~~~~VaF 193 (464)
.--+.++++ .+|..-|-++-|.| -+..|.+ ++-| ..|+||++-. |+|..+|.+|... +..++|
T Consensus 202 ~Pkk~~~~~-~gH~kgvsai~~fp~~~hLlLS----~gmD------~~vklW~vy~~~~~lrtf~gH~k~----Vrd~~~ 266 (503)
T KOG0282|consen 202 LPKKLSHNL-SGHTKGVSAIQWFPKKGHLLLS----GGMD------GLVKLWNVYDDRRCLRTFKGHRKP----VRDASF 266 (503)
T ss_pred ccHhheeec-cCCccccchhhhccceeeEEEe----cCCC------ceEEEEEEecCcceehhhhcchhh----hhhhhc
Confidence 445677788 55889999999999 7888887 6677 8999999965 9999999988853 238999
Q ss_pred eCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 194 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 194 s~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
+ ++|.-+.|+|.|+++|+||++||+|+..++ +..+..|+|.|+ .|+.|+.||+.+|++++...+|+..+
T Consensus 267 s-~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 267 N-NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred c-ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 8 899999999999999999999999999998 566789999885 67899999999999999998888999
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC----CCceEE
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF----RGELVT 337 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~----~Ge~l~ 337 (464)
.+|.|.+ +|.+.+++++|++++||+.+.+-.++.. ..+..+..++...|++..++.-+ |..|-+... .-...+
T Consensus 346 ~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 346 LDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence 9999999 5788888999999999999998877643 33334557788899999999999 999988875 234566
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
.|+||... .|. -.|.|||||.+|+||+. ||.+.+||..|-+.+.+|++|+.
T Consensus 425 ~feGh~va--Gys-~~v~fSpDG~~l~SGds-----------dG~v~~wdwkt~kl~~~lkah~~--------------- 475 (503)
T KOG0282|consen 425 RFEGHSVA--GYS-CQVDFSPDGRTLCSGDS-----------DGKVNFWDWKTTKLVSKLKAHDQ--------------- 475 (503)
T ss_pred hhcceecc--Cce-eeEEEcCCCCeEEeecC-----------CccEEEeechhhhhhhccccCCc---------------
Confidence 99999754 443 36999999999999975 99999999999999999999976
Q ss_pred cccccccccccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEecc
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd 463 (464)
.+..+.|+|-- ..+||++-||.|++|+
T Consensus 476 -------------------~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 -------------------PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -------------------ceEEEEecCCCcceeEecccCceeEecC
Confidence 89999999965 4799999999999997
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-30 Score=282.50 Aligned_cols=223 Identities=15% Similarity=0.224 Sum_probs=201.7
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
.++|. |.--.+.++=..+.|++||..=|.||..+. ++.|+.|+|+| .+|..||+|+..+-+|+-||.+|
T Consensus 14 glsFH-P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH 92 (1202)
T KOG0292|consen 14 GLSFH-PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH 92 (1202)
T ss_pred ceecC-CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc
Confidence 79996 888889999999999999999999997765 78999999976 58899999999999999999999
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCc----
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE---- 334 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge---- 334 (464)
+.-|+.+.|.+- -.-|+++|+|+||||||.++++|+.+++||...|.+..|.|.-.+++|+| |+||||||+.|-
T Consensus 93 lDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 93 LDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred cceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 999999999873 35799999999999999999999999999999999999999999999999 999999995431
Q ss_pred ------------------e--------EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 335 ------------------L--------VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 335 ------------------~--------l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+ .+.|+||.-. ||-++|+|.--+|+||++ |..||||-.
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-----VNwaAfhpTlpliVSG~D-----------DRqVKlWrm 235 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-----VNWAAFHPTLPLIVSGAD-----------DRQVKLWRM 235 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-----cceEEecCCcceEEecCC-----------cceeeEEEe
Confidence 1 3478999877 899999999999999997 999999987
Q ss_pred CCCeE--EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 389 LTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 389 ~tG~c--l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..-+- +-|.+||.+ .|.+|-|+|..+.|.|.|+|++|||||+
T Consensus 236 netKaWEvDtcrgH~n----------------------------------nVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYN----------------------------------NVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred ccccceeehhhhcccC----------------------------------CcceEEecCccceeEecCCCccEEEEec
Confidence 65553 567889998 8999999999999999999999999996
No 43
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=1.3e-27 Score=229.30 Aligned_cols=269 Identities=13% Similarity=0.175 Sum_probs=205.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
++++++...+|.+.+||..+++.+..++. +.. ++++.|+|+|+.+++++ ..+ .++++|++.+|+....+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~~-~~~l~~~~dg~~l~~~~---~~~------~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-GQR-PRGITLSKDGKLLYVCA---SDS------DTIQVIDLATGEVIGTL 69 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-CCC-CCceEECCCCCEEEEEE---CCC------CeEEEEECCCCcEEEec
Confidence 46778888999999999999999999865 433 68899999999875533 334 68999999988864322
Q ss_pred cceeeccccCceEEEEeCCCCcEEE-EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCC---------ceeEEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS---------HVPLKILS 246 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~La-Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~---------d~tIklWd 246 (464)
+.. ..+..++|+ |+|+.|+ +++.|+++++||+.+++++..+. ...+.+++|+|+. ...+.+||
T Consensus 70 ~~~-----~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 70 PSG-----PDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred cCC-----CCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 211 224478997 8998764 55679999999999999888876 4557889998852 23577889
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCC-------CceEEEEEcCCCcEE
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEF-------MTPSAFIFLYENQLF 318 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~-------~~v~sv~Fspdgqll 318 (464)
.++++++..+... +....++|+++ +..+++++ .|++|++||+.+++++..+..+. ..+..++|+|||+.+
T Consensus 144 ~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 144 TKTYEIVDNVLVD-QRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred CCCCeEEEEEEcC-CCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 9999988766532 44577899884 55665654 79999999999999887654321 235578899999975
Q ss_pred EE-Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 319 LT-FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 319 aS-~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+. .. +++|.+||. +++++..+..+ .. +++++|+|||++|++++. .+++|++||+.+++|++
T Consensus 222 ~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~-----~~~~~~~~~g~~l~~~~~----------~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 222 FVALGPANRVAVVDAKTYEVLDYLLVG-QR-----VWQLAFTPDEKYLLTTNG----------VSNDVSVIDVAALKVIK 285 (300)
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEeC-CC-----cceEEECCCCCEEEEEcC----------CCCeEEEEECCCCcEEE
Confidence 44 44 778999999 68888766422 23 678999999999998743 38999999999999999
Q ss_pred EEccCC
Q 012410 396 KINATN 401 (464)
Q Consensus 396 tl~gh~ 401 (464)
+++...
T Consensus 286 ~~~~~~ 291 (300)
T TIGR03866 286 SIKVGR 291 (300)
T ss_pred EEEccc
Confidence 997653
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=249.97 Aligned_cols=224 Identities=12% Similarity=0.226 Sum_probs=193.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE--E--EecCCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--Y--SISDKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l--~--tl~~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~ 257 (464)
...|+ |+|..||||+.|..|-||++. |.|- - +++.+.|++|.|.+ +.|++|+.||++||++.+.++
T Consensus 52 ~~~F~-P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 52 TIKFH-PDGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred EEEEC-CCCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 79997 899999999999999999964 3332 2 34467899999954 689999999999999999999
Q ss_pred eCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc
Q 012410 258 HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE 334 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge 334 (464)
+|..-+.+++- ...|-+|+. +|.|+|+||||+++.++++++...+ .+.||.|..++..+.||. |+.||+||. .++
T Consensus 130 ~h~~~vNs~~p-~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d 207 (338)
T KOG0265|consen 130 GHTSFVNSLDP-SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISGGIDNDIKVWDLRKND 207 (338)
T ss_pred cccceeeecCc-cccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccccceeeccccCceeeeccccCc
Confidence 87777788882 224666666 6799999999999999999987554 689999999999999999 999999999 699
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC----CCeEEEEEccCCCCCCccccc
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL----TGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~----tG~cl~tl~gh~~~~~~~~~~ 410 (464)
++.+++||... |..++.||+|.+|.|-+. |.||++||+. ..+|++.++||.. ..+
T Consensus 208 ~~~~lsGh~Dt-----It~lsls~~gs~llsnsM-----------d~tvrvwd~rp~~p~~R~v~if~g~~h---nfe-- 266 (338)
T KOG0265|consen 208 GLYTLSGHADT-----ITGLSLSRYGSFLLSNSM-----------DNTVRVWDVRPFAPSQRCVKIFQGHIH---NFE-- 266 (338)
T ss_pred ceEEeecccCc-----eeeEEeccCCCccccccc-----------cceEEEEEecccCCCCceEEEeecchh---hhh--
Confidence 99999999998 889999999999999998 9999999985 4789999999974 000
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.-....++||++..+..||.|+.|.+||
T Consensus 267 -------------------------knlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 267 -------------------------KNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred -------------------------hhcceeeccCCCCccccccccceEEEee
Confidence 0344589999999999999999999998
No 45
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.1e-30 Score=258.73 Aligned_cols=275 Identities=15% Similarity=0.237 Sum_probs=225.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.|..-+.+|-|-++.+.|++ ++.| +.|++|++.-+++..-..|-. ..+.+.+++|+ ++++.+.+++.
T Consensus 173 ~h~gev~~v~~l~~sdtlat----gg~D------r~Ik~W~v~~~k~~~~~tLaG--s~g~it~~d~d-~~~~~~iAas~ 239 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLAT----GGSD------RIIKLWNVLGEKSELISTLAG--SLGNITSIDFD-SDNKHVIAASN 239 (459)
T ss_pred ccccccceeEEccCcchhhh----cchh------hhhhhhhcccchhhhhhhhhc--cCCCcceeeec-CCCceEEeecC
Confidence 47888999999999999999 7777 999999997777532222222 34556689997 78889888999
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEE--------eCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKI--------RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf--------s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
|++.++|++.+++++.||+ .+.|.++.| +.+.|.|||+||+..+.|.++.--. ..+..|.-.+ ..+
T Consensus 240 d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~~---~~~ 315 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCSI---SDV 315 (459)
T ss_pred CCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEecc---eee
Confidence 9999999999999998877 567888888 3478999999999999999987521 3445555432 233
Q ss_pred EEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEE
Q 012410 277 LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
++|-.|++||.||++++.+......|. .|.++..+++|.-++|++ |.|+++-|++ -+..++|..-... ..+.++.+
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k-~asDwtrv 393 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK-CASDWTRV 393 (459)
T ss_pred eecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-ccccccee
Confidence 445599999999999999999988885 899999999999999999 9999999995 5566666643221 22335789
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 434 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (464)
.||||+.|+|.||. ||.|+||++.+|||-..++..+..+
T Consensus 394 vfSpd~~YvaAGS~-----------dgsv~iW~v~tgKlE~~l~~s~s~~------------------------------ 432 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSA-----------DGSVYIWSVFTGKLEKVLSLSTSNA------------------------------ 432 (459)
T ss_pred EECCCCceeeeccC-----------CCcEEEEEccCceEEEEeccCCCCc------------------------------
Confidence 99999999999987 9999999999999999998766411
Q ss_pred ccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 435 LEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 435 l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++++|+|-|..|++++.++.+.||.
T Consensus 433 --aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 433 --AITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred --ceEEEEEcCCCchhhcccCCcceEecC
Confidence 699999999999999999999999994
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=255.69 Aligned_cols=277 Identities=11% Similarity=0.177 Sum_probs=229.0
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cCCCCCcccceeeccccCc---eEEEEeCC
Q 012410 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFALFESESLKWP---GFVEFDDV 196 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G~~~~~~~l~~~~~~~~~---~~VaFs~p 196 (464)
-+.+ ..|.+-||=+-||+||++||++| -| .|+-||.+- .+++. ..++. .+|. .++.|| |
T Consensus 217 ~qil-~~htdEVWfl~FS~nGkyLAsaS----kD------~Taiiw~v~~d~~~k---l~~tl--vgh~~~V~yi~wS-P 279 (519)
T KOG0293|consen 217 WQIL-QDHTDEVWFLQFSHNGKYLASAS----KD------STAIIWIVVYDVHFK---LKKTL--VGHSQPVSYIMWS-P 279 (519)
T ss_pred hhhH-hhCCCcEEEEEEcCCCeeEeecc----CC------ceEEEEEEecCccee---eeeee--ecccCceEEEEEC-C
Confidence 3456 45777899999999999999955 44 688899883 33321 12232 2443 379998 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeC-Cccee
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHL-LHRNK 264 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~-~~~~~ 264 (464)
|.++|.+|+.|..+++||+.||.+.+..+ +..+.++++-| +.|.+|-.||+. |..+...++- ...+.
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVH 358 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeE
Confidence 99999999999999999999999987766 35688899877 478999999995 8888887742 35678
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
.++..+ +|.++++...|..|+|++..+..++.....| +.+.++..|.||++++..= +++|.+||+ +..+++.+.||
T Consensus 359 dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 359 DLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred EEEEcC-CCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 999877 5788888889999999999999888766655 5799999999999999988 999999999 68899999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccc
Q 012410 343 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 422 (464)
Q Consensus 343 ~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~ 422 (464)
...+. .|.|+.=--|.++|||||+ |+.|+||+-.+|+.+++|.||+.
T Consensus 437 kq~~f--iIrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~sgkll~~LsGHs~-------------------- 483 (519)
T KOG0293|consen 437 KQGHF--IIRSCFGGGNDKFIASGSE-----------DSKVYIWHRISGKLLAVLSGHSK-------------------- 483 (519)
T ss_pred cccce--EEEeccCCCCcceEEecCC-----------CceEEEEEccCCceeEeecCCcc--------------------
Confidence 98654 2566655667899999986 99999999999999999999996
Q ss_pred ccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 423 KSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 423 ~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
.|..|+++|... .+||||+|||||+|.+
T Consensus 484 --------------~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 484 --------------TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred --------------eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 899999999664 6899999999999964
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=239.44 Aligned_cols=193 Identities=14% Similarity=0.224 Sum_probs=164.7
Q ss_pred EEEEeCCC-CcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe-eCCcceeeEE
Q 012410 190 FVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVD 267 (464)
Q Consensus 190 ~VaFs~pd-Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~ 267 (464)
+|||+ |- |.+||||+.|++||+|++..|.- -+|..+|. +|...|++||
T Consensus 19 ~~awh-p~~g~ilAscg~Dk~vriw~~~~~~s-----------------------------~~ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 19 SVAWH-PGKGVILASCGTDKAVRIWSTSSGDS-----------------------------WTCKTVLDDGHKRSVRSVA 68 (312)
T ss_pred EEEec-cCCceEEEeecCCceEEEEecCCCCc-----------------------------EEEEEeccccchheeeeee
Confidence 89997 66 88999999999999999764211 11222222 3446678899
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCC--cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--C--ceEEEec
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G--ELVTSFE 340 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg--~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--G--e~l~tl~ 340 (464)
|+|. +..|+++|.|.|+-||--..+ +|+.+|.||.+.|-+|+||++|.+||++| |+.|=||.++ + +|+..|+
T Consensus 69 wsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCC-CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 9884 556666899999999975544 69999999999999999999999999999 9999999984 3 3899999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC---CCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~---tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
+|+.- |.-|.|+|...+|+|+|. |.|||+|.-. .-+|+++|.||++
T Consensus 148 ~HtqD-----VK~V~WHPt~dlL~S~SY-----------DnTIk~~~~~~dddW~c~~tl~g~~~--------------- 196 (312)
T KOG0645|consen 148 EHTQD-----VKHVIWHPTEDLLFSCSY-----------DNTIKVYRDEDDDDWECVQTLDGHEN--------------- 196 (312)
T ss_pred ccccc-----ccEEEEcCCcceeEEecc-----------CCeEEEEeecCCCCeeEEEEecCccc---------------
Confidence 99986 788999999999999998 9999999866 3479999999997
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.||+++|+|.|+.|+|+++|+||+||.
T Consensus 197 -------------------TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 197 -------------------TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred -------------------eEEEEEecCCCceEEEecCCcceEeee
Confidence 899999999999999999999999995
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.2e-28 Score=261.98 Aligned_cols=287 Identities=15% Similarity=0.165 Sum_probs=242.6
Q ss_pred ccCCeEEeeeccc-ccE------e--eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC
Q 012410 105 AHSGVCAAFSRET-NRR------I--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (464)
Q Consensus 105 ~~~g~~~~~~~~~-g~~------l--~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~ 175 (464)
-++.++..|.+.. +.. + .++ ++|.+-||++.+|.++..+++ +.. ..++||+..+++|..
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~~~~~S----ga~-------~SikiWn~~t~kciR 408 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDSILLAS----GAG-------ESIKIWNRDTLKCIR 408 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCceeeee----cCC-------CcEEEEEccCcceeE
Confidence 3444566666443 222 1 234 568888999999998877766 434 499999999999975
Q ss_pred cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEE
Q 012410 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKIL 245 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklW 245 (464)
++ +++ +.-...|- |.+++++.|.-.|.+.|+|+....++-++. ++.||+|+.+| +.|+|||+|
T Consensus 409 Ti---~~~---y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 409 TI---TCG---YILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred Ee---ccc---cEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 43 342 44478886 899999999999999999999999988776 78899999988 489999999
Q ss_pred EcC-----CCcEEE--------EEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEE
Q 012410 246 SIE-----DGTVLK--------VFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 246 di~-----tG~~l~--------tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~F 311 (464)
|.+ .|+.-+ +|+ ....+-+|.++|+ +++|+ +=-|.|++|+=+.+-+..-.|-||.-+|.++..
T Consensus 482 df~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd--gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 482 DFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD--GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred eEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC--CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 864 243322 232 2356799999995 66666 459999999999999999999999999999999
Q ss_pred cCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 312 LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|||+++++|+| |++||+|-++ |.|-++|-+|+.. |.+|-|-|+..++.++++ |+.||=||-.
T Consensus 559 S~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-----vm~V~F~P~~~~FFt~gK-----------D~kvKqWDg~ 622 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-----VMSVQFLPKTHLFFTCGK-----------DGKVKQWDGE 622 (888)
T ss_pred cCCcCeEEeccCCCceEEeccccchhhhhhhcccCc-----eeEEEEcccceeEEEecC-----------cceEEeechh
Confidence 99999999999 9999999997 9999999999988 889999999999999998 9999999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.=+|+++|.||.. .||++|.+|+|..++|+|.|.+||+|.
T Consensus 623 kFe~iq~L~~H~~----------------------------------ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 623 KFEEIQKLDGHHS----------------------------------EVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred hhhhheeeccchh----------------------------------eeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999987 999999999999999999999999996
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=8.3e-28 Score=250.04 Aligned_cols=298 Identities=12% Similarity=0.092 Sum_probs=235.8
Q ss_pred eeehhccCCeEEeeecccccEee---EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 100 IVFALAHSGVCAAFSRETNRRIC---FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 100 ~l~~l~~~g~~~~~~~~~g~~l~---~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
.|++++.|+++..|+ |-+.+ ++ ..|..+|++|-|||||..+|+++ +| +++.|+|=.+|+..+.
T Consensus 162 Ri~T~sdDn~v~ffe---GPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~g---sD-------gki~iyDGktge~vg~ 227 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFE---GPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAG---SD-------GKIYIYDGKTGEKVGE 227 (603)
T ss_pred EEEeccCCCeEEEee---CCCeeeeecc-cccccceeeEEECCCCCeEEEec---CC-------ccEEEEcCCCccEEEE
Confidence 367788888999885 55444 35 55888999999999999999977 33 5899999889887654
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCE----eEEEE------eCCCceeEEEE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHV----QEIKI------RSSSHVPLKIL 245 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V----~~Vaf------s~s~d~tIklW 245 (464)
+.. ...|-+-+.+++++ ||++.++++|.|+|+||||+.+.++..++. ...| -.+.+ +-+-+++|-++
T Consensus 228 l~~-~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 228 LED-SDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred ecC-CCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 432 11133445589998 999999999999999999999999999887 2221 12222 23577899999
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-ccCCC--------------------
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFM-------------------- 304 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~gh~~-------------------- 304 (464)
+..++..++++.+|...+..+.-++ ++.+|++++.||.|-=||..+|.+-+.. ++|+.
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd 384 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD 384 (603)
T ss_pred cccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC
Confidence 9999999999998888889999888 5788899999999999999887532111 11110
Q ss_pred ------------------------------------------------------------ceEEEEEcCCCcEEEEEe-C
Q 012410 305 ------------------------------------------------------------TPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 305 ------------------------------------------------------------~v~sv~FspdgqllaS~s-D 323 (464)
.+.++|++||++.+|.|+ |
T Consensus 385 ~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~D 464 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQD 464 (603)
T ss_pred eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEeccc
Confidence 145668899999999999 9
Q ss_pred CeEEEEeCCC-ceE--EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc-
Q 012410 324 RTVAVWNFRG-ELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA- 399 (464)
Q Consensus 324 ~TIklWd~~G-e~l--~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g- 399 (464)
+.|.|+.+.| +++ ..++.|... +..|+|||||.+||++-. .+.|-+||+++.+-...--+
T Consensus 465 gkvhvysl~g~~l~ee~~~~~h~a~-----iT~vaySpd~~yla~~Da-----------~rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLLEHRAA-----ITDVAYSPDGAYLAAGDA-----------SRKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred ceEEEEEecCCcccceeeeecccCC-----ceEEEECCCCcEEEEecc-----------CCcEEEEEcccCceecceeee
Confidence 9999999964 543 357789887 789999999999999864 78999999999887433333
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|+. .|.+|+||||.+.+||||-|-.|.+|+.
T Consensus 529 Hta----------------------------------kI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 529 HTA----------------------------------KINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eee----------------------------------eEEEEEeCCCceEEEeccccceEEEEEc
Confidence 665 8999999999999999999999999974
No 50
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=9e-29 Score=263.36 Aligned_cols=271 Identities=15% Similarity=0.217 Sum_probs=223.4
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceE-EEEeCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF-VEFDDVN 197 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~-VaFs~pd 197 (464)
+.-|.+ .+|+.-|+.|++.+.. .+++ ++.| +++++|.=..++..++...-. +.+++.. ++|-+.+
T Consensus 5 ~ls~~l-~gH~~DVr~v~~~~~~-~i~s----~sRd------~t~~vw~~~~~~~l~~~~~~~--~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHEL-EGHKSDVRAVAVTDGV-CIIS----GSRD------GTVKVWAKKGKQYLETHAFEG--PKGFIANSICYAESD 70 (745)
T ss_pred eeEEEe-ccCccchheeEecCCe-EEee----cCCC------CceeeeeccCcccccceeccc--Ccceeeccceecccc
Confidence 345677 5577779999988865 3445 5677 899999955555443221111 2244333 6664334
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEE-------EeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIK-------IRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Va-------fs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
+-.|..|+.|.+|-||.+.+...+++|. ..+|-++. +|.+-|.|+|+|-+ |+|..++.+|...||.|++
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVAS 148 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeee
Confidence 4468889999999999999999999997 45788887 47789999999987 8999999988899999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHP 347 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~ 347 (464)
.|. +++++||.|+|||||. .|++++++.||++.|+++++.|++.+ +|++ ||.||+|+++|+|+.++.||++.
T Consensus 149 l~e--~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~~ge~l~~~~ghtn~-- 221 (745)
T KOG0301|consen 149 LPE--NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSNDGSIRLWDLDGEVLLEMHGHTNF-- 221 (745)
T ss_pred cCC--CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecCCceEEEEeccCceeeeeeccceE--
Confidence 885 5899999999999997 59999999999999999999999875 5666 99999999999999999999998
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
|.++...++++.|+|+++ |+|+|||+. ++|.+.|.--+-
T Consensus 222 ---vYsis~~~~~~~Ivs~gE-----------DrtlriW~~--~e~~q~I~lPtt------------------------- 260 (745)
T KOG0301|consen 222 ---VYSISMALSDGLIVSTGE-----------DRTLRIWKK--DECVQVITLPTT------------------------- 260 (745)
T ss_pred ---EEEEEecCCCCeEEEecC-----------CceEEEeec--CceEEEEecCcc-------------------------
Confidence 889998899999999876 999999995 499999955442
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.||++.+=++|. |++|+.||.||||.
T Consensus 261 ---------siWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 261 ---------SIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ---------ceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 799999999998 88999999999994
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-28 Score=240.28 Aligned_cols=280 Identities=14% Similarity=0.193 Sum_probs=222.5
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+|.-.+.-|-||.+|+.|.+++ -| .++.+|+-..|+.+++..+|+. -+.++..+ -+.+.|.+||
T Consensus 7 ~GHERplTqiKyN~eGDLlFsca----KD------~~~~vw~s~nGerlGty~GHtG----avW~~Did-~~s~~liTGS 71 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCA----KD------STPTVWYSLNGERLGTYDGHTG----AVWCCDID-WDSKHLITGS 71 (327)
T ss_pred ccCccccceEEecCCCcEEEEec----CC------CCceEEEecCCceeeeecCCCc----eEEEEEec-CCcceeeecc
Confidence 35888999999999999999944 45 7889999889999888777763 34488886 6889999999
Q ss_pred CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------------CceeEEEEEcC-------CCcEEEEEeeCCccee
Q 012410 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------------SHVPLKILSIE-------DGTVLKVFYHLLHRNK 264 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------------~d~tIklWdi~-------tG~~l~tl~~~~~~~~ 264 (464)
.|.++||||+++|+++.++. ...|+.+.|+++ ....|-+.|++ .-+++..+.-+-..+.
T Consensus 72 AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999999999999998 568999999873 33578899988 4454544442224556
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEecc
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~g 341 (464)
++-+.| -++.|++|.+||.|.+||+++|+ .++.-+-|...+..+.||||..+|+|+| |.|-||||+ +-++++|+.-
T Consensus 152 ~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 152 SALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred eeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 677777 47788888999999999999985 5566688999999999999999999999 999999999 6999999965
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccc-cccCCCC--eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ-WMEGSAG--SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~-~~~s~Dg--tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
- +.||+.+|+|-.+.++-|+--+.-|- ......| -.|.+++...+-+.-++||=+
T Consensus 231 e------~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG---------------- 288 (327)
T KOG0643|consen 231 E------RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG---------------- 288 (327)
T ss_pred c------ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc----------------
Confidence 4 33999999999999988864111110 1111111 134444445556667777765
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
+|.+|||+|||+--+||++||.|||
T Consensus 289 ------------------PINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 289 ------------------PINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred ------------------CcceeEECCCCcccccCCCCceEEE
Confidence 9999999999999999999999998
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-28 Score=236.34 Aligned_cols=225 Identities=15% Similarity=0.239 Sum_probs=196.2
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~t 255 (464)
+.+..|.|+ .||++..+++.|+|||||+...|.|++|.+ ++.|.+++.+. ..|+.|.+||++||++++.
T Consensus 18 gaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 18 GAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR 96 (307)
T ss_pred cceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee
Confidence 445589997 999999999999999999999999998877 57899988853 5899999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC--CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t--g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~ 332 (464)
|.+|...|..|.|.+. ..-+++||.|.++|+||.++ -+.++++..-.+.|.++..+ +..|++|| |||+|.+|++
T Consensus 97 ~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR 173 (307)
T KOG0316|consen 97 FRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR 173 (307)
T ss_pred cccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEee
Confidence 9999899999999984 45566689999999999987 46899999888999998664 66799999 9999999994
Q ss_pred -CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 333 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 333 -Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
|++....-||. |+++.|||||+....+|. |+||||-|-.||+.|+..+||.+.
T Consensus 174 ~G~l~sDy~g~p-------it~vs~s~d~nc~La~~l-----------~stlrLlDk~tGklL~sYkGhkn~-------- 227 (307)
T KOG0316|consen 174 KGTLSSDYFGHP-------ITSVSFSKDGNCSLASSL-----------DSTLRLLDKETGKLLKSYKGHKNM-------- 227 (307)
T ss_pred cceeehhhcCCc-------ceeEEecCCCCEEEEeec-----------cceeeecccchhHHHHHhcccccc--------
Confidence 99887777774 899999999999999998 999999999999999999999861
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+.=....|+.--..++|||+||.|.+||+
T Consensus 228 ------------------------eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 ------------------------EYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ------------------------eeeeeeeecccceeEEeccCCceEEEEEe
Confidence 12223466667778999999999999985
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.6e-28 Score=232.28 Aligned_cols=275 Identities=13% Similarity=0.202 Sum_probs=230.8
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
+++..+ ..+.+.|+.|-||-||++..+ ++.| +|++||+..+|-++.+...|..|++ .++-+ .|.
T Consensus 8 kr~~~l-~~~qgaV~avryN~dGnY~lt----cGsd------rtvrLWNp~rg~liktYsghG~EVl----D~~~s-~Dn 71 (307)
T KOG0316|consen 8 KRLSIL-DCAQGAVRAVRYNVDGNYCLT----CGSD------RTVRLWNPLRGALIKTYSGHGHEVL----DAALS-SDN 71 (307)
T ss_pred hhceee-cccccceEEEEEccCCCEEEE----cCCC------ceEEeecccccceeeeecCCCceee----ecccc-ccc
Confidence 456677 458889999999999999888 5566 8999999999999988888887766 55555 466
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE--------eCCCceeEEEEEcCC--CcEEEEEeeCCcceeeE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI--------RSSSHVPLKILSIED--GTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf--------s~s~d~tIklWdi~t--G~~l~tl~~~~~~~~~V 266 (464)
..++||+.|+.+.+||++||+.++.+. ...|..|+| |.+.|.+|++||-.+ -+++++|......|.+|
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 789999999999999999999998876 467888888 447899999999764 56788888666888999
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL 344 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~ 344 (464)
+..+ ..|++||.|||+|.+|++.|++....-|| +|.++.||+||+..+.++ |+|++|-|- +||+|+++.||.+
T Consensus 152 ~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 152 DVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred Eecc---cEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 8755 57888999999999999999998877776 689999999999999999 999999999 6999999999999
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
.-+ --...|+..-..++|||+ ||.|.+||+..+..+.++..|+. |
T Consensus 227 ~ey---kldc~l~qsdthV~sgSE-----------DG~Vy~wdLvd~~~~sk~~~~~~-v-------------------- 271 (307)
T KOG0316|consen 227 MEY---KLDCCLNQSDTHVFSGSE-----------DGKVYFWDLVDETQISKLSVVST-V-------------------- 271 (307)
T ss_pred cee---eeeeeecccceeEEeccC-----------CceEEEEEeccceeeeeeccCCc-e--------------------
Confidence 543 234567777888999986 99999999999999999988875 0
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
-|.+|+|.|--..+.++... .+.+|
T Consensus 272 ------------~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 272 ------------IVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred ------------eEEeeecccCccceeEecCC-ceece
Confidence 48999999988877776533 33344
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5.9e-29 Score=247.18 Aligned_cols=347 Identities=16% Similarity=0.217 Sum_probs=263.6
Q ss_pred cchhhhhh---ccccceeeeecCCCCCcccchhhhccc-------cceEEEEeccceeehhccCC-------------eE
Q 012410 54 SNAQERFR---NMHLVEEYDTHDPKGHCPFVLPFLMKR-------TKVIEIVAARDIVFALAHSG-------------VC 110 (464)
Q Consensus 54 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~-------s~v~~~~~ag~~l~~l~~~g-------------~~ 110 (464)
-..||||- ++-.+.-||-++. +-. -..=++| +.-..++....++|+|.+.= ++
T Consensus 108 Q~~peRy~~lE~ll~R~YFDp~Ea---Y~d-ssKEkrRa~IAQ~ls~EV~VVppSRLlaLlGQaLKWQqHQGLLPPGt~i 183 (508)
T KOG0275|consen 108 QIQPERYIRLENLLNRSYFDPREA---YGD-SSKEKRRAVIAQALSGEVHVVPPSRLLALLGQALKWQQHQGLLPPGTTI 183 (508)
T ss_pred ccChHHHHHHHHHhcccccChhhh---cCc-chHHHHHHHHHHHhcCceEEcChHHHHHHHHHHhhhHhhcCCCCCCcee
Confidence 46788874 4444555554443 322 1111222 33345566677788777653 23
Q ss_pred Eeee-----------cccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccc
Q 012410 111 AAFS-----------RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (464)
Q Consensus 111 ~~~~-----------~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l 179 (464)
-+|. ..-.+..+.+.++...-+.+..|||||++|++ ++-| .-+.+|+.-+|++...++-
T Consensus 184 DLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvs----gSvD------GFiEVWny~~GKlrKDLkY 253 (508)
T KOG0275|consen 184 DLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVS----GSVD------GFIEVWNYTTGKLRKDLKY 253 (508)
T ss_pred eeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEee----cccc------ceeeeehhccchhhhhhhh
Confidence 3331 00012334555666666889999999999999 5555 6889999999998542221
Q ss_pred eeec----cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeC--------CCceeEEE
Q 012410 180 FESE----SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRS--------SSHVPLKI 244 (464)
Q Consensus 180 ~~~~----~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~--------s~d~tIkl 244 (464)
-..+ .-..+-++.|| -|...||||++|+.||||.+.||+||+.+. ...|.++.||. +.|.|++|
T Consensus 254 QAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 254 QAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred hhhcceeecccceEEEeec-ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEE
Confidence 1111 11223389998 799999999999999999999999998775 67899999964 68999999
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc--CCCceEEEEEcCCC-cEEEEE
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYEN-QLFLTF 321 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv~Fspdg-qllaS~ 321 (464)
--+.+|+||+.|++|..-+..+.|.+ +|..++++|.|+|||+|+..|++|+.+++. ..-.|.+|...|.+ ..++.+
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred eccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 99999999999999888999999988 688999999999999999999999998863 34578888877655 345555
Q ss_pred e-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 322 R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 322 s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
. .+||-|-|++|+.+++|..-.---.| .-+.+.||-|.++.+.++ |+-+.-+.+.+|+.-+++.-|
T Consensus 412 Nrsntv~imn~qGQvVrsfsSGkREgGd--Fi~~~lSpkGewiYcigE-----------D~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 412 NRSNTVYIMNMQGQVVRSFSSGKREGGD--FINAILSPKGEWIYCIGE-----------DGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred cCCCeEEEEeccceEEeeeccCCccCCc--eEEEEecCCCcEEEEEcc-----------CcEEEEEEeecCceeeeeecc
Confidence 5 88999999999999999732211111 346778999999987765 999999999999999999999
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.. .|-.++-+|-.+.|||=|+||+++||.
T Consensus 479 Ek----------------------------------dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EK----------------------------------DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cc----------------------------------cccccccCcccchhhhhcccchhhhcC
Confidence 86 788899999999999999999999995
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=3.1e-27 Score=237.55 Aligned_cols=278 Identities=11% Similarity=0.132 Sum_probs=224.9
Q ss_pred ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd 197 (464)
..-+.++ ..|..-|.+|+.+|++..++| ++.| -...||++.+|+.......|...+. .+.|| .|
T Consensus 54 DdS~~tF-~~H~~svFavsl~P~~~l~aT----GGgD------D~AflW~~~~ge~~~eltgHKDSVt----~~~Fs-hd 117 (399)
T KOG0296|consen 54 DDSLVTF-DKHTDSVFAVSLHPNNNLVAT----GGGD------DLAFLWDISTGEFAGELTGHKDSVT----CCSFS-HD 117 (399)
T ss_pred ccceeeh-hhcCCceEEEEeCCCCceEEe----cCCC------ceEEEEEccCCcceeEecCCCCceE----EEEEc-cC
Confidence 3456677 448888999999998887777 4444 4899999999997665666654333 89998 79
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
|.+||+|.-++.|+||++.+|....++- .+.+-=+.++| +.|+.|=.|.|.++...+.+.+|..++..=.
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 9999999999999999999999887773 33333344454 6899999999999888999998888888889
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc----------------------------------------------
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---------------------------------------------- 301 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g---------------------------------------------- 301 (464)
|+|+ |.+++.+..|+||++||..||+.+..+.+
T Consensus 198 f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 198 FIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred ccCC-CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 9995 77888899999999999999997765541
Q ss_pred -----CC---CceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 012410 302 -----EF---MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 372 (464)
Q Consensus 302 -----h~---~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~ 372 (464)
|. ..|.++.||..=.+.|+|+ ||+|.|||..-.-++..--|... |..+-|-+ -++|+++|.
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~-t~~l~t~c~---- 346 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN-TDYLLTACA---- 346 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-cchheeecc----
Confidence 00 1122334455667899999 99999999854444555557666 77888988 677888886
Q ss_pred cccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 012410 373 DQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS 452 (464)
+|+||+||..||+|+.++.||+. .|...+++||++.++|
T Consensus 347 -------~g~v~~wDaRtG~l~~~y~GH~~----------------------------------~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 347 -------NGKVRQWDARTGQLKFTYTGHQM----------------------------------GILDFALSPQKRLVVT 385 (399)
T ss_pred -------CceEEeeeccccceEEEEecCch----------------------------------heeEEEEcCCCcEEEE
Confidence 99999999999999999999997 8999999999999999
Q ss_pred eeCCCcEEecc
Q 012410 453 GNRHGLVHVWS 463 (464)
Q Consensus 453 gs~DgtVrlWd 463 (464)
+|.|++.+|.+
T Consensus 386 ~s~D~~a~VF~ 396 (399)
T KOG0296|consen 386 VSDDNTALVFE 396 (399)
T ss_pred ecCCCeEEEEe
Confidence 99999999875
No 56
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.9e-27 Score=254.95 Aligned_cols=220 Identities=10% Similarity=0.078 Sum_probs=176.4
Q ss_pred EecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCc--------EEEEEeeCCcce
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGT--------VLKVFYHLLHRN 263 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~--------~l~tl~~~~~~~ 263 (464)
.|+.++.|+||++....++.++. ...|.+|+|+| +.|++|+|||+.++. ++.++.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 37789999999988877777776 46899999987 378999999998753 345677777889
Q ss_pred eeEEEEccCCCeE-EEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 264 KKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 264 ~~V~F~~~~~~~l-la~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
..|+|+|. +..+ ++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++ |++|+|||. +|+++.++.
T Consensus 129 ~sVaf~P~-g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 129 SIIDWNPM-NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEEECCC-CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99999995 4455 467899999999999999887776 457899999999999999999 999999999 699999999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
+|...+....++...|+||+++|+|++.+ ...+++|+|||+.+ ++++.++..+.. +
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------~~~~R~VkLWDlr~~~~pl~~~~ld~~-~--------------- 263 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFS-------KNNMREMKLWDLKNTTSALVTMSIDNA-S--------------- 263 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcC-------CCCccEEEEEECCCCCCceEEEEecCC-c---------------
Confidence 99875332224556678999999998761 11246899999984 788887755442 0
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.....+++|..+++|+.|++||+|+
T Consensus 264 ----------------~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 264 ----------------APLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ----------------cceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 0445555667799999999999999997
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=238.82 Aligned_cols=270 Identities=12% Similarity=0.150 Sum_probs=226.8
Q ss_pred cCCCceEEEEEEee---CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEE
Q 012410 126 VSPDEVIRSLFYNK---NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~---~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~La 202 (464)
-+|.-.|-.++||| +|-.||++|.++ .-.|.+=.+|+.+++|.+|.. -+.+...+ .|...-|
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~----------~pmlr~g~tgdwigtfeghkg----avw~~~l~-~na~~aa 75 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDG----------KPMLRNGDTGDWIGTFEGHKG----AVWSATLN-KNATRAA 75 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCC----------CchhccCCCCCcEEeeeccCc----ceeeeecC-chhhhhh
Confidence 56999999999995 899999977443 334556678888888887774 23366665 6888889
Q ss_pred EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------CceeEEEEEcCCC-cEEEEEeeCCcceeeEEEEccC
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQF 272 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F~~~~ 272 (464)
|++.|-|.||||.-||..|+++. .+-|.++||+.+ .++-++|+|++.- ...+.+.+|...++.|-|-. .
T Consensus 76 saaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-e 154 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-E 154 (334)
T ss_pred hhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-c
Confidence 99999999999999999999998 466899999864 5567889888642 34566777778899999976 3
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCe
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNT 351 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v 351 (464)
+..||++.+|+||||||.+||..+++|... +.|.++-.++||++|..+--++|+.||. +=++|++++- -|+|
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~------P~nV 227 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM------PCNV 227 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecCceeEEeccccccceeeccC------cccc
Confidence 578888899999999999999999988754 5799999999999887777889999998 6677776642 2679
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCCCCCCcccccccccccccc
Q 012410 352 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 430 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (464)
.+..++|+...+++|+. |..+.-+|..||+-+..+ +||-+
T Consensus 228 ~SASL~P~k~~fVaGge-----------d~~~~kfDy~TgeEi~~~nkgh~g---------------------------- 268 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGE-----------DFKVYKFDYNTGEEIGSYNKGHFG---------------------------- 268 (334)
T ss_pred ccccccCCCceEEecCc-----------ceEEEEEeccCCceeeecccCCCC----------------------------
Confidence 99999999999999876 999999999999999886 88876
Q ss_pred ccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 431 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 431 ~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+|.|||||..-||||+|||||||.
T Consensus 269 ------pVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 269 ------PVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ------ceEEEEECCCCceeeccCCCceEEEEE
Confidence 999999999999999999999999996
No 58
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=3.8e-26 Score=219.19 Aligned_cols=250 Identities=13% Similarity=0.142 Sum_probs=189.0
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS- 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s- 237 (464)
.++++|++.+|++...+... ..+..++|+ |||+.| ++++.|++|++||+.+++.+.++. ...+..++|+|+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~-----~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVG-----QRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceEEEEECC-----CCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence 69999999999875433321 234579997 899876 677889999999999999988776 345677888763
Q ss_pred --------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC-CeEEEEECCCCcEEEEcccCCCceEE
Q 012410 238 --------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFMTPSA 308 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D-~tIkIWDv~tg~~l~~l~gh~~~v~s 308 (464)
.+++|++||+++++++..+... .....++|+| ++..+++++.+ ..+.+||..+++++...... ..+..
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~ 161 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRF 161 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccE
Confidence 4689999999999999888743 4457899988 45666666655 46778899999887654333 35678
Q ss_pred EEEcCCCcEEE-EEe-CCeEEEEeC-CCceEEEeccCCCCc-CCC-CeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 309 FIFLYENQLFL-TFR-NRTVAVWNF-RGELVTSFEDHLLWH-PDC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 309 v~Fspdgqlla-S~s-D~TIklWd~-~Ge~l~tl~gH~~~~-~~~-~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
++|+|||+.|+ ++. |++|++||. +|++++++..+.... +.+ ....++|+|||++++.+.. .+++|
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~----------~~~~i 231 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG----------PANRV 231 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC----------CCCeE
Confidence 99999999874 555 999999999 699988776442110 000 0236889999998655432 26789
Q ss_pred EEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEec
Q 012410 384 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVW 462 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlW 462 (464)
.+||+.+++.+..+..+. .+++++|+|||+.|++++ .+++|++|
T Consensus 232 ~v~d~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 232 AVVDAKTYEVLDYLLVGQ-----------------------------------RVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred EEEECCCCcEEEEEEeCC-----------------------------------CcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 999999999987764322 678999999999999875 69999999
Q ss_pred cC
Q 012410 463 SN 464 (464)
Q Consensus 463 d~ 464 (464)
|.
T Consensus 277 d~ 278 (300)
T TIGR03866 277 DV 278 (300)
T ss_pred EC
Confidence 84
No 59
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=238.17 Aligned_cols=229 Identities=15% Similarity=0.237 Sum_probs=195.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec----------CCCEeEEEEeC--------CCceeEEEEEc
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----------DKHVQEIKIRS--------SSHVPLKILSI 247 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~----------~~~V~~Vafs~--------s~d~tIklWdi 247 (464)
.|+.+..|| |||++|+|||-|+-|.|||.-+|++-+.|. +..|.++.||- +.|+.||+|-|
T Consensus 214 Sh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 214 SHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred cchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 677789998 999999999999999999999999876554 46799999974 58899999999
Q ss_pred CCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 248 EDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 248 ~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
+||+||+.|. .|...+.++.|+. +|.++|++|.|.|+||--+.+|+|++.++||+..|..+.|++||..++|+| |+|
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 9999999998 5668899999998 689999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 326 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 326 IklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
||+|+. +++|+.||+--..- ..|++|..-|-. ..++-+-. ..||.|-++ .||.++++..-..
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d---~~vnsv~~~PKnpeh~iVCNr-----------sntv~imn~-qGQvVrsfsSGkR- 435 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTD---YPVNSVILLPKNPEHFIVCNR-----------SNTVYIMNM-QGQVVRSFSSGKR- 435 (508)
T ss_pred EEEecCcchhhhhhccCCCCc---ccceeEEEcCCCCceEEEEcC-----------CCeEEEEec-cceEEeeeccCCc-
Confidence 999999 79999999855432 238898887743 34444333 789999996 8999998843221
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.|. +--+...||-|..+|+.++|+.+..+
T Consensus 436 --------EgG----------------------dFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 436 --------EGG----------------------DFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred --------cCC----------------------ceEEEEecCCCcEEEEEccCcEEEEE
Confidence 111 44567899999999999999988765
No 60
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=4.2e-28 Score=246.40 Aligned_cols=257 Identities=13% Similarity=0.133 Sum_probs=212.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
|.-|.+++++|...||+ .+.-...++..+|+..|+++.++++|..++| +..+ ..||+|+....... .+
T Consensus 108 GRRLltgs~SGEFtLWN-g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS----gD~g------G~iKyWqpnmnnVk-~~ 175 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWN-GTSFNFETILQAHDSPVRTMKWSHNGTWMIS----GDKG------GMIKYWQPNMNNVK-II 175 (464)
T ss_pred CceeEeecccccEEEec-CceeeHHHHhhhhcccceeEEEccCCCEEEE----cCCC------ceEEecccchhhhH-Hh
Confidence 88999999999999997 5555555677899999999999999999999 5555 89999996544432 22
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEc
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSI 247 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi 247 (464)
+.+..+.+ ..|||| |+....+++|.|++|||||...++.-..|. +-.|.+|++.| +.|.+||+||.
T Consensus 176 ~ahh~eaI---RdlafS-pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 176 QAHHAEAI---RDLAFS-PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred hHhhhhhh---heeccC-CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 23332322 389998 677778889999999999998887765555 44588888766 68889999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCe
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRT 325 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~T 325 (464)
.+|+||.|+.+|.+.|..|.|.+. +..||++|.|.++|++|+++-+.+.++++|...|++++++|=.. +|.|++ |+.
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 999999999988899999999995 47888899999999999999999999999999999999998554 666677 999
Q ss_pred EEEEeCC-CceEEEe-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 326 VAVWNFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 326 IklWd~~-Ge~l~tl-~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
|..|.+. -+.+-.+ ..|..- ||+++++|=|.+|++||. |.|+|.|.
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~-----iwsl~~hPlGhil~tgsn-----------d~t~rfw~ 378 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGE-----IWSLAYHPLGHILATGSN-----------DRTVRFWT 378 (464)
T ss_pred eEEEeccccccccCCCcccccc-----eeeeeccccceeEeecCC-----------Ccceeeec
Confidence 9999985 3444333 367665 899999999999999986 99999996
No 61
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=9.8e-26 Score=244.14 Aligned_cols=243 Identities=12% Similarity=0.089 Sum_probs=177.6
Q ss_pred ccceeeh------hccCCeEEeeecccccEeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEec
Q 012410 97 ARDIVFA------LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (464)
Q Consensus 97 ag~~l~~------l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~ 169 (464)
.++++|. ....|++++|+..+...+..+ .+|...|.++.|+|+ +..||+ ++.| ++|+||+++
T Consensus 37 n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLAS----gS~D------gtIrIWDi~ 105 (568)
T PTZ00420 37 SSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILAS----GSED------LTIRVWEIP 105 (568)
T ss_pred CCCeEEEEEEcCCCCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEE----EeCC------CeEEEEECC
Confidence 3555554 345679999998888888888 458889999999997 788888 4566 799999998
Q ss_pred cCCCC-Cc--cccee-eccccCceEEEEeCCCCcE-EEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEE
Q 012410 170 RGKPD-SG--FALFE-SESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKI 244 (464)
Q Consensus 170 ~G~~~-~~--~~l~~-~~~~~~~~~VaFs~pdGk~-LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIkl 244 (464)
++... .. .++.. ..+...+.+|+|+ |+|.. ||+|+.|++|+|||+.+++.+.++.
T Consensus 106 t~~~~~~~i~~p~~~L~gH~~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------------------- 165 (568)
T PTZ00420 106 HNDESVKEIKDPQCILKGHKKKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------------------- 165 (568)
T ss_pred CCCccccccccceEEeecCCCcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-------------------
Confidence 75421 10 01111 1133445689997 88875 6899999999999998776544331
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceE-----EEEEcCCCcEEE
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-----AFIFLYENQLFL 319 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~-----sv~Fspdgqlla 319 (464)
++ ..+.+++|++ ++..|++++.|++|+|||+++++++.++.+|...+. ...|++|+++|+
T Consensus 166 -------------~~-~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il 230 (568)
T PTZ00420 166 -------------MP-KKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL 230 (568)
T ss_pred -------------cC-CcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence 11 3456777877 355666678999999999999999999999986543 334679999999
Q ss_pred EEe-C----CeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 320 TFR-N----RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 320 S~s-D----~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
|++ | ++|+|||++ +++++++..+...- .+...+.+++|.++++|+. |++||+|++.+|.
T Consensus 231 TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~---~L~p~~D~~tg~l~lsGkG-----------D~tIr~~e~~~~~ 296 (568)
T PTZ00420 231 STGFSKNNMREMKLWDLKNTTSALVTMSIDNASA---PLIPHYDESTGLIYLIGKG-----------DGNCRYYQHSLGS 296 (568)
T ss_pred EEEcCCCCccEEEEEECCCCCCceEEEEecCCcc---ceEEeeeCCCCCEEEEEEC-----------CCeEEEEEccCCc
Confidence 977 6 489999994 78888765444321 1455677888999999986 9999999998875
Q ss_pred EEEEEccC
Q 012410 393 CLAKINAT 400 (464)
Q Consensus 393 cl~tl~gh 400 (464)
+..|..+
T Consensus 297 -~~~l~~~ 303 (568)
T PTZ00420 297 -IRKVNEY 303 (568)
T ss_pred -EEeeccc
Confidence 4555443
No 62
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.9e-26 Score=245.19 Aligned_cols=203 Identities=12% Similarity=0.126 Sum_probs=167.9
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEE---EEeeCCcceeeE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLK---VFYHLLHRNKKV 266 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~---tl~~~~~~~~~V 266 (464)
..+++ +||..+++++.+.....|+...|.++.. .-++|+... .|.+|...|..|
T Consensus 25 ~~~~~-~d~~~~~~~n~~~~a~~w~~~gg~~v~~----------------------~~~~G~~~~~~~~l~GH~~~V~~v 81 (493)
T PTZ00421 25 PSTAL-WDCSNTIACNDRFIAVPWQQLGSTAVLK----------------------HTDYGKLASNPPILLGQEGPIIDV 81 (493)
T ss_pred ccccc-CCCCCcEeECCceEEEEEecCCceEEee----------------------ccccccCCCCCceEeCCCCCEEEE
Confidence 44565 7888888999999999999765543222 222343322 356677889999
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCC-------cEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceE
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNA-------ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg-------~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l 336 (464)
+|+|.++..|++++.|++|+|||+.++ +++.++.+|...|.+++|+|++ ++|||++ |++|+|||+ +|+++
T Consensus 82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV 161 (493)
T ss_pred EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE
Confidence 999955667888999999999999875 3678899999999999999986 7999999 999999999 69999
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
.++.+|... |++++|+|||++||++|. |++|+|||+.+|+++.++.+|...
T Consensus 162 ~~l~~h~~~-----V~sla~spdG~lLatgs~-----------Dg~IrIwD~rsg~~v~tl~~H~~~------------- 212 (493)
T PTZ00421 162 EVIKCHSDQ-----ITSLEWNLDGSLLCTTSK-----------DKKLNIIDPRDGTIVSSVEAHASA------------- 212 (493)
T ss_pred EEEcCCCCc-----eEEEEEECCCCEEEEecC-----------CCEEEEEECCCCcEEEEEecCCCC-------------
Confidence 999999987 899999999999999987 999999999999999999999750
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEee----CCCcEEeccC
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN----RHGLVHVWSN 464 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs----~DgtVrlWd~ 464 (464)
.+..+.|.|++..|++++ .|++|+|||.
T Consensus 213 --------------------~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 213 --------------------KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred --------------------cceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 344678899988887654 5899999984
No 63
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-25 Score=222.47 Aligned_cols=227 Identities=16% Similarity=0.266 Sum_probs=191.8
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEe----------CCCceeEEEEEcCCCcEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIR----------SSSHVPLKILSIEDGTVL 253 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs----------~s~d~tIklWdi~tG~~l 253 (464)
+++.+++|+ +||..|+++++|.+++|+|..+|++++++.. ..|.-+.|. ...|.+||.+++.+.+++
T Consensus 15 ~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 567799998 8999999999999999999999999999984 478888882 136889999999999999
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~ 332 (464)
+.|.||..+|.++.-+|- ++..|++|.|+|||+||+++.+|...+.-- ....+||.|+|-+||.+. ...|||+|++
T Consensus 94 RYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred EEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 999998899999999995 589999999999999999999998765532 234578999999999999 5599999973
Q ss_pred ---CceEEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 333 ---GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 333 ---Ge~l~tl~----gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
...-++|. .+..| +.+-|||||++|.-+.. .+-+.|-|.-+|..+.++.+|.+.
T Consensus 171 s~dkgPF~tf~i~~~~~~ew------~~l~FS~dGK~iLlsT~-----------~s~~~~lDAf~G~~~~tfs~~~~~-- 231 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEW------TDLEFSPDGKSILLSTN-----------ASFIYLLDAFDGTVKSTFSGYPNA-- 231 (311)
T ss_pred ccCCCCceeEccCCCCccce------eeeEEcCCCCEEEEEeC-----------CCcEEEEEccCCcEeeeEeeccCC--
Confidence 44555554 34444 78999999999988765 789999999999999999999860
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
++. . -+..|+|||+.+.+|+.||+|++|+.
T Consensus 232 -------~~~---------------------~-~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 232 -------GNL---------------------P-LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred -------CCc---------------------c-eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 100 2 35789999999999999999999973
No 64
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=7.1e-27 Score=248.96 Aligned_cols=214 Identities=16% Similarity=0.242 Sum_probs=185.3
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE--ec--CCCEeE-EEEe---------CCCceeEEEEEcCCCcEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--IS--DKHVQE-IKIR---------SSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t--l~--~~~V~~-Vafs---------~s~d~tIklWdi~tG~~l~t 255 (464)
.|++. ++..++++|.|+|+|||+-+..+.+.+ +. .+.|.. +.+- .+.|.+|-+|...+++.+.+
T Consensus 19 ~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~ 96 (745)
T KOG0301|consen 19 AVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT 96 (745)
T ss_pred eeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh
Confidence 67774 555788999999999999777666543 33 234444 6664 35889999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCc
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 334 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge 334 (464)
|.+|...|-+++--+ .+.+++||.|.|+|+| +.|+|..++.||+..||+|++.|++ .++||| |+|||+|.- |+
T Consensus 97 LkgH~snVC~ls~~~--~~~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~ 170 (745)
T KOG0301|consen 97 LKGHKSNVCSLSIGE--DGTLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GT 170 (745)
T ss_pred hhccccceeeeecCC--cCceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cc
Confidence 998878888887544 2668889999999999 5799999999999999999999999 889999 999999994 99
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
+++||.||+.- |+.+++=|++.+| |++ +||.||+|++ +|+||....||++
T Consensus 171 ~l~tf~gHtD~-----VRgL~vl~~~~fl-Scs-----------NDg~Ir~w~~-~ge~l~~~~ghtn------------ 220 (745)
T KOG0301|consen 171 LLKTFSGHTDC-----VRGLAVLDDSHFL-SCS-----------NDGSIRLWDL-DGEVLLEMHGHTN------------ 220 (745)
T ss_pred hhhhhccchhh-----eeeeEEecCCCeE-eec-----------CCceEEEEec-cCceeeeeeccce------------
Confidence 99999999986 8999999987765 555 4999999997 9999999999998
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-|.+++..++++.|+|.++|+|+|+|+
T Consensus 221 ----------------------~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 221 ----------------------FVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred ----------------------EEEEEEecCCCCeEEEecCCceEEEee
Confidence 899999999999999999999999996
No 65
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.1e-27 Score=249.38 Aligned_cols=223 Identities=14% Similarity=0.228 Sum_probs=194.7
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCC-e-----EEEEec--CCCEeEEEE--------eCCCceeEEEEEcCCC--c
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-T-----MLYSIS--DKHVQEIKI--------RSSSHVPLKILSIEDG--T 251 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~-----~l~tl~--~~~V~~Vaf--------s~s~d~tIklWdi~tG--~ 251 (464)
.+.-|.|+|++|-+|+.|++||+|++..- . ++.++. .+||.+++. |.++|.|||+|+.+.+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44455689999999999999999997632 2 344444 467777665 6789999999999988 7
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc--EEE--------Ecc-cCCCceEEEEEcCCCcEEEE
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LME--------VSR-TEFMTPSAFIFLYENQLFLT 320 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~--~l~--------~l~-gh~~~v~sv~FspdgqllaS 320 (464)
|+.|+..|..-|++++.+++.++..++||-|+.|.|||+.+|. ++. .+. |+...++++|-.+.|.+|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 9999997778999999988778888889999999999999983 332 234 88899999999999999999
Q ss_pred Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 321 FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 321 ~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
|+ .+-+++||- +++-+..|.||+.- |..+-.++||..++|+|. ||||||||+...+|++|+.
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdN-----Vr~ll~~dDGt~~ls~sS-----------DgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDN-----VRVLLVNDDGTRLLSASS-----------DGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred cCcccceEEeccccccceeeeeccccc-----eEEEEEcCCCCeEeecCC-----------CceEEeeeccccceeeeEE
Confidence 99 999999999 69999999999975 899999999999999985 9999999999999999999
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.|.. .||++.-+|+=+.+|||++||.|..=
T Consensus 253 vH~e----------------------------------~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 253 VHKE----------------------------------GVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred eccC----------------------------------ceEEEeeCCCcceEEecCCCCcEEec
Confidence 9997 89999999999999999999998753
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-26 Score=236.62 Aligned_cols=264 Identities=17% Similarity=0.204 Sum_probs=214.5
Q ss_pred CCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 128 PDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
|+ .|-++.|||.-- -+|++| + -.+-|.+..+-....++.-|...+. ++.|- .||++||.|..
T Consensus 26 ~~-~vssl~fsp~~P~d~aVt~---S--------~rvqly~~~~~~~~k~~srFk~~v~----s~~fR-~DG~LlaaGD~ 88 (487)
T KOG0310|consen 26 HN-SVSSLCFSPKHPYDFAVTS---S--------VRVQLYSSVTRSVRKTFSRFKDVVY----SVDFR-SDGRLLAAGDE 88 (487)
T ss_pred cC-cceeEecCCCCCCceEEec---c--------cEEEEEecchhhhhhhHHhhcccee----EEEee-cCCeEEEccCC
Confidence 44 499999999432 234433 2 3466666666666666666664322 89997 79999999999
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
.|-|||+|+++-.-|..+. +..|..+.|+| ++|+.+|+||+.++.+...+.+|..-|++.+|+|..+..
T Consensus 89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 9999999988755565554 67899999977 588999999999999877888888999999999974445
Q ss_pred EEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-C-CceEEEeccCCCCcCCCCee
Q 012410 276 LLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-R-GELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~ 352 (464)
+++||.||+||+||.++. ..+..+ .|..+|.++.|.|.|++|||++-..|||||+ + |+++..+..|.-- |.
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt-----VT 242 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT-----VT 242 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccce-----EE
Confidence 566899999999999997 444444 4667999999999999999999889999999 4 6777777778776 89
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
++.+..|+..|.|||- |+-||++|+.+-|-+..+.= .+
T Consensus 243 cL~l~s~~~rLlS~sL-----------D~~VKVfd~t~~Kvv~s~~~-~~------------------------------ 280 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSL-----------DRHVKVFDTTNYKVVHSWKY-PG------------------------------ 280 (487)
T ss_pred EEEeecCCceEeeccc-----------ccceEEEEccceEEEEeeec-cc------------------------------
Confidence 9999999999999987 99999999888787776632 22
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
+|.+++.|||++++|-|-.||++-
T Consensus 281 ----pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 281 ----PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ----ceeeEEecCCCceEEEecccceee
Confidence 899999999999999999999874
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=4.6e-26 Score=230.00 Aligned_cols=245 Identities=14% Similarity=0.158 Sum_probs=196.5
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE----
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI---- 234 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf---- 234 (464)
..+.|+|++.=.+-+ ++....+-.|+.+|.-. ++.+.||++|++++|||+ .|++.+++. .+.|.+++.
T Consensus 83 ~~leIEYv~~~~aP~--pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n 156 (423)
T KOG0313|consen 83 EILEIEYVEAITAPK--PLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKN 156 (423)
T ss_pred heeEEEEEEecCCCC--ccccccchhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecC
Confidence 588889985433322 22222233666677653 689999999999999997 578777665 567877776
Q ss_pred -------eCCCceeEEEEEcCCCcEEEEE----eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-----------
Q 012410 235 -------RSSSHVPLKILSIEDGTVLKVF----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN----------- 292 (464)
Q Consensus 235 -------s~s~d~tIklWdi~tG~~l~tl----~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t----------- 292 (464)
+++.|+|++||-++.|+..-+. .+|-..|-+|+-.+ ++.++++||.|.+|+||++.+
T Consensus 157 ~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 157 SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccch
Confidence 3479999999999988755332 26666788888777 577888899999999999322
Q ss_pred --------------CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEE
Q 012410 293 --------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYI 356 (464)
Q Consensus 293 --------------g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svaf 356 (464)
+..+-++.||...|.+|.|++ ...+.|+| |.|||.||+ +|.++.++.+... .++|..
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks------l~~i~~ 308 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS------LNCISY 308 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc------eeEeec
Confidence 235668999999999999999 55677888 999999999 7999999988765 689999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---EEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~---cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
+|..++|||||. |.-|||||..+|. -..+|.||++
T Consensus 309 ~~~~~Ll~~gss-----------dr~irl~DPR~~~gs~v~~s~~gH~n------------------------------- 346 (423)
T KOG0313|consen 309 SPLSKLLASGSS-----------DRHIRLWDPRTGDGSVVSQSLIGHKN------------------------------- 346 (423)
T ss_pred ccccceeeecCC-----------CCceeecCCCCCCCceeEEeeecchh-------------------------------
Confidence 999999999986 9999999998864 3578999998
Q ss_pred cccCEEEEEEcCCC-CEEEEeeCCCcEEeccC
Q 012410 434 ALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 434 ~l~~V~slafspDg-~~LaSgs~DgtVrlWd~ 464 (464)
+|.+|-++|.. ..|+|||.|+++||||.
T Consensus 347 ---wVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 347 ---WVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ---hhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 99999999966 46899999999999983
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=9.8e-27 Score=236.73 Aligned_cols=256 Identities=13% Similarity=0.150 Sum_probs=213.4
Q ss_pred ceeehhccCCeEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 99 DIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
+.+|+...+..|++|++.-++ .+.+|-++. ..|.++.|-++|..++.+ +.| ...+||++..++...+
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-g~it~~d~d~~~~~~iAa----s~d------~~~r~Wnvd~~r~~~T 256 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSL-GNITSIDFDSDNKHVIAA----SND------KNLRLWNVDSLRLRHT 256 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccC-CCcceeeecCCCceEEee----cCC------Cceeeeeccchhhhhh
Confidence 889999999999999988777 677775544 459999999999999984 455 6899999999999888
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE------eCCCceeEEEEEcCC
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI------RSSSHVPLKILSIED 249 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf------s~s~d~tIklWdi~t 249 (464)
+.+|+.++. ++.|. -....++||+.|.|||+||+..+.|.+++- ...+.+|.. |.-.|++|++||+.+
T Consensus 257 LsGHtdkVt----~ak~~-~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs 331 (459)
T KOG0288|consen 257 LSGHTDKVT----AAKFK-LSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRS 331 (459)
T ss_pred hccccccee----eehhh-ccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccC
Confidence 888876544 78886 333348999999999999999999998754 444444444 455889999999999
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC----CceEEEEEcCCCcEEEEEe-CC
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF----MTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~----~~v~sv~FspdgqllaS~s-D~ 324 (464)
+.+..+...+ +.+.+|+-++ ++-.+|+.+.|.|+++.|+++.+..+++.... .-.+.+.||||+.++|+|| ||
T Consensus 332 ~~~~~sv~~g-g~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 332 ADKTRSVPLG-GRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred CceeeEeecC-cceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC
Confidence 9999998854 6899999887 56788889999999999999999988876532 1266788999999999999 99
Q ss_pred eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 325 TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 325 TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
.|+||++ +|+|...+...... ..|.+++|+|-|..|+|+++ ++.+.||
T Consensus 410 sv~iW~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk-----------~~~v~lW 458 (459)
T KOG0288|consen 410 SVYIWSVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADK-----------QKAVTLW 458 (459)
T ss_pred cEEEEEccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccC-----------CcceEec
Confidence 9999999 79999888765542 12899999999999999987 9999999
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=5e-26 Score=225.43 Aligned_cols=282 Identities=16% Similarity=0.207 Sum_probs=208.5
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec------------cCCCCCcccceee--ccc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------------RGKPDSGFALFES--ESL 185 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~------------~G~~~~~~~l~~~--~~~ 185 (464)
.-+++ -.|....|.-+|||||..+|+ ++.| -.|||-|++ .|+..+..++... +|.
T Consensus 104 Et~yl-t~HK~~cR~aafs~DG~lvAT----GsaD------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 104 ETKYL-TSHKSPCRAAAFSPDGSLVAT----GSAD------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred ceEEE-eecccceeeeeeCCCCcEEEc----cCCc------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc
Confidence 45677 458899999999999999999 5555 577788775 2333322232221 123
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
.-+..++|. |-..+|+|||.|+||||||...-.- -+-.+.|+. .+.+++
T Consensus 173 devn~l~FH-Pre~ILiS~srD~tvKlFDfsK~sa-----------------------------KrA~K~~qd-~~~vrs 221 (430)
T KOG0640|consen 173 DEVNDLDFH-PRETILISGSRDNTVKLFDFSKTSA-----------------------------KRAFKVFQD-TEPVRS 221 (430)
T ss_pred Ccccceeec-chhheEEeccCCCeEEEEecccHHH-----------------------------HHHHHHhhc-cceeee
Confidence 334479996 8999999999999999999653111 011122222 267788
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE---cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~---l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
+.|.| .|+.||+|-+--+++|+|+.|-||.-. -.+|+..|..|-+|+.|++.+|+| ||.|||||- .++|+.|+.
T Consensus 222 iSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~ 300 (430)
T KOG0640|consen 222 ISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG 300 (430)
T ss_pred EeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH
Confidence 88888 588999999999999999999999864 357899999999999999999999 999999996 899999997
Q ss_pred c-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC-------------CCCc
Q 012410 341 D-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC-------------SPKV 406 (464)
Q Consensus 341 g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~-------------~~~~ 406 (464)
. |... .|-+..|+.||++|.|.++ |.+||||.|.||+||.+..|-.. +-..
T Consensus 301 ~AH~gs----evcSa~Ftkn~kyiLsSG~-----------DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd 365 (430)
T KOG0640|consen 301 NAHGGS----EVCSAVFTKNGKYILSSGK-----------DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED 365 (430)
T ss_pred hhcCCc----eeeeEEEccCCeEEeecCC-----------cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc
Confidence 4 4433 4889999999999999988 99999999999999999877521 1112
Q ss_pred ccccCCCCCCccccccccccccccccccc------cCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEAL------EDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+..+++-++--+ .|+-+.....+| ..|..+.-||.+.-..++|.|-.+|.|-
T Consensus 366 yVl~pDEas~slc----sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 366 YVLFPDEASNSLC----SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred eEEccccccCcee----eccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 2333333221111 222222222222 2788899999999999999999999994
No 70
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1.6e-24 Score=225.61 Aligned_cols=275 Identities=14% Similarity=0.181 Sum_probs=215.7
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCC-cccceeeccccCceEEEEeCCCCc
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDS-GFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~-~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
+..=..|...+.=.-|||.|.++|+ +..- ..++|||... ...++ .++.+. +.+..++++ +||+
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiAS----GD~s------G~vRIWdtt~~~hiLKnef~v~a----G~I~Di~Wd-~ds~ 116 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIAS----GDVS------GKVRIWDTTQKEHILKNEFQVLA----GPIKDISWD-FDSK 116 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEee----cCCc------CcEEEEeccCcceeeeeeeeecc----cccccceeC-CCCc
Confidence 3333568999999999999999888 3333 6899999643 22221 233332 334479997 8999
Q ss_pred EEEEecCCC----cEEEEeCCCCeEEEEe--cCCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 200 VLTYSAQDS----IYKVFDLKNYTMLYSI--SDKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 200 ~LaSgs~D~----tiKlWdl~tg~~l~tl--~~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
.|+..++-+ -+-+|| +|+-+-.+ +...|.+++|.| ++|.+|-+++=.-=+.-.++.+|..-|.
T Consensus 117 RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 117 RIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred EEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 888665532 355676 66655444 456899999966 5889999876443333446666667889
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc---cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~---gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
+|.|+|+ ++++++.+.|++|.|+|=.+|+.+..+. +|...|.+++||||++.|||.| |.|+||||+ +++|+++|
T Consensus 195 ~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 195 CVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred eEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 9999994 8888889999999999999999999887 8999999999999999999999 999999999 69999988
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
.--.. +.|..| .+-+. ++.|++-|- +|+|++.|...+..+++++||+.
T Consensus 274 ~~~~~-v~dqqv-G~lWq--kd~lItVSl-----------~G~in~ln~~d~~~~~~i~GHnK----------------- 321 (603)
T KOG0318|consen 274 PMGST-VEDQQV-GCLWQ--KDHLITVSL-----------SGTINYLNPSDPSVLKVISGHNK----------------- 321 (603)
T ss_pred ecCCc-hhceEE-EEEEe--CCeEEEEEc-----------CcEEEEecccCCChhheeccccc-----------------
Confidence 63332 222222 33344 788888886 89999999999999999999996
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+.+|||++|+|||.||.|.=|+
T Consensus 322 -----------------~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 322 -----------------SITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred -----------------ceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 899999999999999999999999997
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=7.2e-27 Score=241.18 Aligned_cols=226 Identities=15% Similarity=0.243 Sum_probs=188.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCC-CeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEee
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~t-g~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~ 258 (464)
++.|.+-.|.+|+||+.|+.||||++.+ +.|++|+. ...|.+++|++ +.|.+|||||+|||+|+..|..
T Consensus 219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~ 298 (503)
T KOG0282|consen 219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL 298 (503)
T ss_pred hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec
Confidence 7888734999999999999999999997 99999887 46799999965 6899999999999999999973
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l 336 (464)
. +....|-|.|++...+|+|+.|+.|+.||+++|+.++....|-..+.++.|-|+|+.|+|++ |++|+||+. .+-.+
T Consensus 299 ~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 299 D-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred C-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence 2 56699999997557888899999999999999999999999999999999999999999999 999999998 46555
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC---eEEEEEccCCCCCCcccccCCC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---KCLAKINATNCSPKVDDELGSS 413 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG---~cl~tl~gh~~~~~~~~~~~~~ 413 (464)
+-...+..- . ..+|..+|+|.+++.=|. |..|-|..+..- .--+.++||.. .+
T Consensus 378 k~i~~~~~h-s---mP~~~~~P~~~~~~aQs~-----------dN~i~ifs~~~~~r~nkkK~feGh~v--aG------- 433 (503)
T KOG0282|consen 378 KNIADPEMH-T---MPCLTLHPNGKWFAAQSM-----------DNYIAIFSTVPPFRLNKKKRFEGHSV--AG------- 433 (503)
T ss_pred hhhcchhhc-c---CcceecCCCCCeehhhcc-----------CceEEEEecccccccCHhhhhcceec--cC-------
Confidence 433333221 1 347899999999998776 899999875331 11245677763 11
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 414 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.=..|.|||||.+|+||+.||.|-+||
T Consensus 434 -----------------------ys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 434 -----------------------YSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred -----------------------ceeeEEEcCCCCeEEeecCCccEEEee
Confidence 335699999999999999999999998
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.1e-26 Score=220.06 Aligned_cols=272 Identities=13% Similarity=0.155 Sum_probs=211.9
Q ss_pred EEEEEeeCCC-EEEE--EEeecCCCCcccce-eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 133 RSLFYNKNND-SLIT--VSVYASDNFSSLKC-RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 133 ~Sv~fs~~g~-~l~s--vSa~~sddfs~L~~-~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
+||-|||.=+ .||+ +..|+ |-| ..+.|-++..++-+....-+..+ .-...|++++....+++.++.||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yG------l~G~G~L~ile~~~~~gi~e~~s~d~~--D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYG------LAGNGRLFILEVTDPKGIQECQSYDTE--DGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred ceeEecccccchhheeehhhcc------cccCceEEEEecCCCCCeEEEEeeecc--cceeEeeecCCCcceEEEEecCc
Confidence 5888998632 2333 23332 333 67777776544433222222211 11126999977788899999999
Q ss_pred cEEEEeCCC-CeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 209 IYKVFDLKN-YTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 209 tiKlWdl~t-g~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
++||||+.- -..+..++ ...|++|..++ +-|+|||||+-.-++-++||++|...+..++|+|..++-+
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence 999999642 23455554 45688887754 6899999999999999999998878889999999888888
Q ss_pred EEEeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEc-CCCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCCCe
Q 012410 277 LVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNT 351 (464)
Q Consensus 277 la~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~Fs-pdgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~~v 351 (464)
++.|.|++++|||++. |+.+. +..|...+.+..|+ ++-.+++|++ |++||.||++ -..+..|.||... |
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A-----V 237 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA-----V 237 (311)
T ss_pred EEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE-----E
Confidence 8899999999999988 55544 78888889999999 8889999999 9999999994 6788899999987 8
Q ss_pred eEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccc
Q 012410 352 NNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 429 (464)
Q Consensus 352 ~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (464)
+.|.|||- -.+|||+|- |=|+||||.+. .-|+.+..-|+.
T Consensus 238 Rkvk~Sph~~~lLaSasY-----------DmT~riw~~~~~ds~~e~~~~HtE--------------------------- 279 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASY-----------DMTVRIWDPERQDSAIETVDHHTE--------------------------- 279 (311)
T ss_pred EEEecCcchhhHhhhccc-----------cceEEecccccchhhhhhhhccce---------------------------
Confidence 99999996 568899887 99999999984 467788888876
Q ss_pred cccccccCEEEEEEcC-CCCEEEEeeCCCcEEecc
Q 012410 430 TVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 430 ~~~~~l~~V~slafsp-Dg~~LaSgs~DgtVrlWd 463 (464)
-|..+.||+ ++..+|+.+-|+++.||+
T Consensus 280 -------Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 280 -------FVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred -------EEeccccccccCceeeecccccceeeec
Confidence 566677776 667899999999999997
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.1e-25 Score=234.36 Aligned_cols=249 Identities=14% Similarity=0.119 Sum_probs=214.4
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRS- 236 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~- 236 (464)
..+.||+-.+|+.. .++..+ ...+.+|.++ ++|++||-|-.+++|.|||+++.+.+.++. ...|-+++.+.
T Consensus 197 ~~vylW~~~s~~v~---~l~~~~-~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~ 271 (484)
T KOG0305|consen 197 QSVYLWSASSGSVT---ELCSFG-EELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS 271 (484)
T ss_pred ceEEEEecCCCceE---EeEecC-CCceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc
Confidence 68999999999853 344432 3556699997 899999999999999999999988887654 45788888854
Q ss_pred -----CCceeEEEEEcCCCcEEEE-EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEE
Q 012410 237 -----SSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 310 (464)
Q Consensus 237 -----s~d~tIklWdi~tG~~l~t-l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~ 310 (464)
+.|+.|..+|+..++.+.. +.+|.+.|..+.|++ ++.++++|+.|..+.|||..+-+.+..+.+|...|.+++
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA 350 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence 6889999999999888877 778889999999999 466777789999999999988899999999999999999
Q ss_pred EcC-CCcEEEEEe---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 311 FLY-ENQLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 311 Fsp-dgqllaS~s---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
|+| ...+||+|+ |++||+||. +|+++.+...... |-+|.|+|..+-|+++-- =.+.-|.|
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ------VcsL~Wsk~~kEi~sthG---------~s~n~i~l 415 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ------VCSLIWSKKYKELLSTHG---------YSENQITL 415 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc------eeeEEEcCCCCEEEEecC---------CCCCcEEE
Confidence 997 567888875 999999999 7999988765543 789999999977776542 12678999
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|+..+-+.++.+.||+. .|..++.||||.+|+||+.|.|+|+|+.
T Consensus 416 w~~ps~~~~~~l~gH~~----------------------------------RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTS----------------------------------RVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EeccccceeeeecCCcc----------------------------------eeEEEEECCCCCEEEEecccCcEEeccc
Confidence 99999999999999997 8999999999999999999999999973
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=8.3e-25 Score=234.74 Aligned_cols=272 Identities=12% Similarity=0.139 Sum_probs=229.4
Q ss_pred hhhhccccceEEEEeccceeehhcc-CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccce
Q 012410 82 LPFLMKRTKVIEIVAARDIVFALAH-SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (464)
Q Consensus 82 l~~l~~~s~v~~~~~ag~~l~~l~~-~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~ 160 (464)
+..+--|+.|+.+-++.+=+++++. .+-+++|++.+++++.++ ..+.+-+.+|=|.+.++++ |...
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi---~~~y~l~~~Fvpgd~~Iv~----G~k~------ 433 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI---TCGYILASKFVPGDRYIVL----GTKN------ 433 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe---ccccEEEEEecCCCceEEE----eccC------
Confidence 4455567788888888554444444 558999999999999999 4457999999998887777 4455
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-----CCeE---E-----EEec-C
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-----NYTM---L-----YSIS-D 226 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-----tg~~---l-----~tl~-~ 226 (464)
+.+-+.|++.+.+..+.+-|+ +-+++++-+ |||+-+++||.|+|||+||.+ .|+. | ++|. .
T Consensus 434 Gel~vfdlaS~~l~Eti~AHd----gaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ 508 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIRAHD----GAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE 508 (888)
T ss_pred CceEEEEeehhhhhhhhhccc----cceeeeeec-CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecc
Confidence 678889999988877766555 344589997 899999999999999999965 1322 1 2333 5
Q ss_pred CCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 012410 227 KHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 298 (464)
Q Consensus 227 ~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~ 298 (464)
+.|.+|++||+ -|.||||+-+.|=+.--+|.+|-=+|.+++.+|+ ...+++||.|++||||-+.=|.|.+.
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D-SklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD-SKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC-cCeEEeccCCCceEEeccccchhhhh
Confidence 78999999996 6789999999998888888888789999999885 45566689999999999999999999
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 012410 299 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 376 (464)
Q Consensus 299 l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~ 376 (464)
+-+|.+.|.+|-|.|+..+|-|++ |+.||-||- .=+++++|.||..- ||.++.+|+|.+++|+|.
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e-----v~cLav~~~G~~vvs~sh-------- 654 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE-----VWCLAVSPNGSFVVSSSH-------- 654 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe-----eeeeEEcCCCCeEEeccC--------
Confidence 999999999999999999999999 999999998 58999999999987 899999999999999987
Q ss_pred cCCCCeEEEEeC
Q 012410 377 EGSAGSINVSSI 388 (464)
Q Consensus 377 ~s~DgtIklWdi 388 (464)
|.+||+|.-
T Consensus 655 ---D~sIRlwE~ 663 (888)
T KOG0306|consen 655 ---DKSIRLWER 663 (888)
T ss_pred ---CceeEeeec
Confidence 999999984
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=1.7e-24 Score=217.88 Aligned_cols=267 Identities=16% Similarity=0.135 Sum_probs=219.0
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|...-|+ |.+||++.-+|.+++|++.+|..-+.+-..-++ |-=+++.|-+.+|+. ++.| ..+..|
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~d-ieWl~WHp~a~illA----G~~D------GsvWmw 175 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVED-IEWLKWHPRAHILLA----GSTD------GSVWMW 175 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCc-eEEEEecccccEEEe----ecCC------CcEEEE
Confidence 467888887 999999999999999999999999988544444 555999999999887 7777 899999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-----------CCEeEEEEe
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----------KHVQEIKIR 235 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-----------~~V~~Vafs 235 (464)
.|..+..-+.+++++.. ...=+|. ||||.++.+..|+||++||++||+.+..+.. +..-+..+.
T Consensus 176 ~ip~~~~~kv~~Gh~~~----ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 176 QIPSQALCKVMSGHNSP----CTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred ECCCcceeeEecCCCCC----ccccccc-CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 99885444445554432 2256787 8999999999999999999999999988761 223445556
Q ss_pred CCCceeEEEEEcCCCcEEEEEee--------CCcceeeEEEEccCCC-eEE-EEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 236 SSSHVPLKILSIEDGTVLKVFYH--------LLHRNKKVDFIEQFNE-KLL-VKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 236 ~s~d~tIklWdi~tG~~l~tl~~--------~~~~~~~V~F~~~~~~-~ll-a~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
.+.++++++-+..+|+++..+++ +.+.+.+|.|+|.... .|+ +|+-||+|-|||..+..+.+... |...
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~ 329 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDG 329 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCc
Confidence 67899999999999999988873 3455688888885322 233 47899999999999988887777 4467
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
|..+-|.+ ..+|++++ |++|++||. +|+|+.++.||+.. |...+++||+++++++|. |++.
T Consensus 330 V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~~~~vvT~s~-----------D~~a 392 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQKRLVVTVSD-----------DNTA 392 (399)
T ss_pred eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCCCcEEEEecC-----------CCeE
Confidence 99999999 67777888 999999999 69999999999998 788999999999999987 9999
Q ss_pred EEEeCC
Q 012410 384 NVSSIL 389 (464)
Q Consensus 384 klWdi~ 389 (464)
+++++.
T Consensus 393 ~VF~v~ 398 (399)
T KOG0296|consen 393 LVFEVP 398 (399)
T ss_pred EEEecC
Confidence 999864
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=5e-24 Score=207.35 Aligned_cols=268 Identities=10% Similarity=0.132 Sum_probs=220.3
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce---EEEEeCCCCcEEEE
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTY 203 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~---~VaFs~pdGk~LaS 203 (464)
+|...|.||+||-+|..|++ ++.| +++++|.+..++... +....+|.+ -++.++++...+|+
T Consensus 18 ~~~~~v~Sv~wn~~g~~las----gs~d------ktv~v~n~e~~r~~~-----~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLAS----GSFD------KTVSVWNLERDRFRK-----ELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred hhhhcceEEEEcccCceeee----cccC------CceEEEEecchhhhh-----hhcccCCCcchhhheeCCCCCcceEE
Confidence 46677999999999999999 6667 899999998886532 222234443 57888889999999
Q ss_pred ecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC
Q 012410 204 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 204 gs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~ 274 (464)
+|.|++|++||...++|...+. ...---+.++|+ .|--|-+.|+.+-+..++.+.. -.+..+.|. .+|.
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne~~w~-~~nd 160 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNEISWN-NSND 160 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc-ceeeeeeec-CCCC
Confidence 9999999999999999998766 223334666763 4556777888887777766533 456778887 3566
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCee
Q 012410 275 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
.+......|+|.|...-.-+.++.++.|.....++.|+|+|++||+|+ |..+.|||+ +--|+++|..|.-+ |+
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp-----VR 235 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP-----VR 235 (313)
T ss_pred EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc-----eE
Confidence 666677789999999888999999999998899999999999999999 999999999 58899999998765 99
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
.|.||-||++|||||+ |..|-|=+++||.-+..++.-.
T Consensus 236 TlSFS~dg~~lASaSE-----------Dh~IDIA~vetGd~~~eI~~~~------------------------------- 273 (313)
T KOG1407|consen 236 TLSFSHDGRMLASASE-----------DHFIDIAEVETGDRVWEIPCEG------------------------------- 273 (313)
T ss_pred EEEeccCcceeeccCc-----------cceEEeEecccCCeEEEeeccC-------------------------------
Confidence 9999999999999986 9999999999999999885433
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCC---------CcEEec
Q 012410 433 EALEDITSLFYDEERNEIYTGNRH---------GLVHVW 462 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~D---------gtVrlW 462 (464)
...+||++|....||=+..| |+||+.
T Consensus 274 ----~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 274 ----PTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ----CceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 67899999999999977654 667765
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.1e-25 Score=238.20 Aligned_cols=231 Identities=13% Similarity=0.177 Sum_probs=182.0
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe---------------------------------------------
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--------------------------------------------- 219 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--------------------------------------------- 219 (464)
-+-+.+..|| +|||+||+|++|+.||||.+...+
T Consensus 267 ~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 267 KGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred CCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 3555589998 899999999999999999987600
Q ss_pred -E--E--E--Ee----------cCCCEeEEEEe-------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 220 -M--L--Y--SI----------SDKHVQEIKIR-------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 220 -~--l--~--tl----------~~~~V~~Vafs-------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
+ + + .| +...|.+|.+| .+.|+|||||++..-+||++|.|. .-|.+|+|.|.|+.+
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-dfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN-DFVTCVAFNPVDDRY 424 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecC-CeeEEEEecccCCCc
Confidence 0 0 0 00 01235555553 369999999999999999999976 889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceE-EEeccCCC-----CcCC
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV-TSFEDHLL-----WHPD 348 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l-~tl~gH~~-----~~~~ 348 (464)
+++||-|+-||||++...+-..-..-| +-|+|++|+||||..+-|+ +|.+++++..|..+ ..+.=|.. .+.
T Consensus 425 FiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~- 502 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK- 502 (712)
T ss_pred EeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-
Confidence 999999999999999888877655555 6799999999999999999 99999999976544 33331111 000
Q ss_pred CCeeEEEECCCCC--EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 349 CNTNNIYITSDQD--LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 349 ~~v~svafSpDg~--~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
-|..+-|.|-.- +|++. +|-.|||.|..+-+.+.+|+|+.+. +.
T Consensus 503 -rITG~Q~~p~~~~~vLVTS------------nDSrIRI~d~~~~~lv~KfKG~~n~----------~S----------- 548 (712)
T KOG0283|consen 503 -RITGLQFFPGDPDEVLVTS------------NDSRIRIYDGRDKDLVHKFKGFRNT----------SS----------- 548 (712)
T ss_pred -eeeeeEecCCCCCeEEEec------------CCCceEEEeccchhhhhhhcccccC----------Cc-----------
Confidence 177888876433 77764 3999999999999999999998760 00
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
++ +-.|++||+.|+|||+|.-|.||++
T Consensus 549 ----------Q~-~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 549 ----------QI-SASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ----------ce-eeeEccCCCEEEEeecCceEEEEeC
Confidence 33 4689999999999999999999985
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.4e-24 Score=219.67 Aligned_cols=265 Identities=17% Similarity=0.264 Sum_probs=209.4
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC------------cccceee--ccccCceEE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS------------GFALFES--ESLKWPGFV 191 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~------------~~~l~~~--~~~~~~~~V 191 (464)
+.|.--+-+|+++||++...++| ++ .+|-=|++.+|+-+. +.++-.. .+.+++-.+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsas---k~-------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSAS---KD-------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred ccccCcceEEEeeccccceeecC---CC-------cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 55888899999999999999966 22 377778888888541 1121111 355666689
Q ss_pred EEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEeeCCc
Q 012410 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 192 aFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
|.| +||++||+|+.|.-|.|||..|++.++++. .+.|.+++|. .+.|.+||+|+++.-..+.||-+|..
T Consensus 209 avS-~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 209 AVS-SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred EEc-CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 998 899999999999999999999999999877 4689999993 46899999999998888899988778
Q ss_pred ceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 262 RNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.+..|+-... ++.++ |+.|.|++||++ .-+-..++.+|...+-+++|-.|-. |+||| ||+|.||++ .-+.+-+
T Consensus 288 ~v~~IdaL~r--eR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 288 GVLGIDALSR--ERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred ceeeechhcc--cceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeE
Confidence 8888886654 88888 569999999998 6666678899988999999988776 67888 999999998 5665544
Q ss_pred ec-------c-----CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEEccCCCCCC
Q 012410 339 FE-------D-----HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPK 405 (464)
Q Consensus 339 l~-------g-----H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gh~~~~~ 405 (464)
.. + |..| |++||..|..+++||||. +|.||||-+.+| +-+.-|...+-
T Consensus 364 ~~~AHgv~~~~~~~~~~~W-----itsla~i~~sdL~asGS~-----------~G~vrLW~i~~g~r~i~~l~~ls~--- 424 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFW-----ITSLAVIPGSDLLASGSW-----------SGCVRLWKIEDGLRAINLLYSLSL--- 424 (479)
T ss_pred eeccccccCCccccccccc-----eeeeEecccCceEEecCC-----------CCceEEEEecCCccccceeeeccc---
Confidence 33 1 1227 899999999999999986 999999999888 22222211110
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEe
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 453 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg 453 (464)
. ..|.+|+|+++|+.|+.|
T Consensus 425 -------------------------~----GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 425 -------------------------V----GFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred -------------------------c----cEEEEEEEccCCCEEEEe
Confidence 0 189999999999977665
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.8e-24 Score=218.92 Aligned_cols=265 Identities=11% Similarity=0.129 Sum_probs=212.8
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccE---eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRR---ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~---l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti 163 (464)
..|.-+-|+ |.+||+++.+.+.-+|++..-.. .++| .+|...|--+.||||..+|.+ ++.+ ..+
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPDdryLla----Cg~~------e~~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPDDRYLLA----CGFD------EVL 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCCCCeEEe----cCch------Hhe
Confidence 456666666 99999999999999999776655 7788 679999999999999999998 6666 679
Q ss_pred EEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCEeEEEEeCC---
Q 012410 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIRSS--- 237 (464)
Q Consensus 164 ~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V~~Vafs~s--- 237 (464)
++||+.+|++... +...+--.+.++++. |||+.+++||.|++|-.||+ +|+.+....+ -.|+++|++++
T Consensus 294 ~lwDv~tgd~~~~---y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHL---YPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred eeccCCcchhhhh---cccCcCCCcceeEEc-cCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcE
Confidence 9999999998532 222111223478996 99999999999999999997 6777766653 45999999874
Q ss_pred -----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc---eEEE
Q 012410 238 -----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT---PSAF 309 (464)
Q Consensus 238 -----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~---v~sv 309 (464)
.|..|++.+.|+-.+......+ +.+.+...+.+ +...|+.=.++.|++||++...+++...||... +.+
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS- 445 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKD-GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS- 445 (519)
T ss_pred EEEEecccceeeechhhhhhhcccccc-CceeEEEEcCC-CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe-
Confidence 6788999999988777655433 67788877773 444444569999999999988888888888653 333
Q ss_pred EEc-CCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEE
Q 012410 310 IFL-YENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 310 ~Fs-pdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
.|- .+..++|||| |+.|.||+. +|+++.+|.||..- ||.|+++| |-..+||||+ ||||||
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-----vNcVswNP~~p~m~ASasD-----------DgtIRI 509 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-----VNCVSWNPADPEMFASASD-----------DGTIRI 509 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-----eeEEecCCCCHHHhhccCC-----------CCeEEE
Confidence 366 4558999999 999999999 79999999999975 89999999 5567899887 999999
Q ss_pred EeC
Q 012410 386 SSI 388 (464)
Q Consensus 386 Wdi 388 (464)
|-+
T Consensus 510 Wg~ 512 (519)
T KOG0293|consen 510 WGP 512 (519)
T ss_pred ecC
Confidence 975
No 80
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1e-22 Score=220.75 Aligned_cols=311 Identities=14% Similarity=0.162 Sum_probs=231.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCC---CcccceeeE--EEEEeccCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN---FSSLKCRST--KIEYIRRGK 172 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sdd---fs~L~~~ti--~l~~i~~G~ 172 (464)
=|+||.+..+|++.++++..++.|..+.. ....|-++.|..||..+.+++ .+.+ ||+|..+.. -+.+..-|-
T Consensus 214 LDVVaiG~~~G~ViifNlK~dkil~sFk~-d~g~VtslSFrtDG~p~las~--~~~G~m~~wDLe~kkl~~v~~nah~~s 290 (910)
T KOG1539|consen 214 LDVVAIGLENGTVIIFNLKFDKILMSFKQ-DWGRVTSLSFRTDGNPLLASG--RSNGDMAFWDLEKKKLINVTRNAHYGS 290 (910)
T ss_pred ceEEEEeccCceEEEEEcccCcEEEEEEc-cccceeEEEeccCCCeeEEec--cCCceEEEEEcCCCeeeeeeeccccCC
Confidence 68999999999999999999999999944 358899999999999887755 4433 444444111 011111111
Q ss_pred CCC-----c------------ccc--------------eeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC----
Q 012410 173 PDS-----G------------FAL--------------FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---- 217 (464)
Q Consensus 173 ~~~-----~------------~~l--------------~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t---- 217 (464)
+.+ + ... +..+|...|.++.|-..+|..+.|+++|+|++.+++-.
T Consensus 291 v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~ 370 (910)
T KOG1539|consen 291 VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQS 370 (910)
T ss_pred cccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHh
Confidence 100 0 000 11123344556888767999999999999999998642
Q ss_pred ---CeEEEEec--------------CCCEeEEEEeC-------------CCceeEEEEEcCCCcE-EEEEee-----CCc
Q 012410 218 ---YTMLYSIS--------------DKHVQEIKIRS-------------SSHVPLKILSIEDGTV-LKVFYH-----LLH 261 (464)
Q Consensus 218 ---g~~l~tl~--------------~~~V~~Vafs~-------------s~d~tIklWdi~tG~~-l~tl~~-----~~~ 261 (464)
|+ ++... -..|-+.+|.. -++..++.|+..+-+. ..+|.+ ...
T Consensus 371 ~~l~~-~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~ 449 (910)
T KOG1539|consen 371 QELGQ-LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDI 449 (910)
T ss_pred Hhhcc-cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCc
Confidence 22 11111 12355555532 2566789999986544 344442 123
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc---ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCce-
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL- 335 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l---~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~- 335 (464)
.+.+|+-++ =|..-++|+..|+|-++|+++|-....+ ..|.+.|++++.---+++++|++ ||-++.||+ .+.+
T Consensus 450 ~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 450 NATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred ceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 457787766 3566777889999999999999999988 58999999999999999999999 999999998 4553
Q ss_pred ----------------------------------------EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 012410 336 ----------------------------------------VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 375 (464)
Q Consensus 336 ----------------------------------------l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~ 375 (464)
++.|.||.+. |++..|||||++|+|+|.
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr-----itd~~FS~DgrWlisasm------- 596 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR-----ITDMTFSPDGRWLISASM------- 596 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc-----eeeeEeCCCCcEEEEeec-------
Confidence 2345589998 899999999999999998
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 376 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
|+|||+||+.||+|+-.|.-.. ...+|.|||+|..|||...
T Consensus 597 ----D~tIr~wDlpt~~lID~~~vd~-----------------------------------~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 597 ----DSTIRTWDLPTGTLIDGLLVDS-----------------------------------PCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred ----CCcEEEEeccCcceeeeEecCC-----------------------------------cceeeEECCCCCEEEEEEe
Confidence 9999999999999999884432 6789999999999999999
Q ss_pred C-CcEEeccC
Q 012410 456 H-GLVHVWSN 464 (464)
Q Consensus 456 D-gtVrlWd~ 464 (464)
| .-|.||.|
T Consensus 638 d~~gIylWsN 647 (910)
T KOG1539|consen 638 DQNGIYLWSN 647 (910)
T ss_pred cCceEEEEEc
Confidence 9 56999987
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.7e-24 Score=212.71 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=204.7
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+|.+-||-|+--.--.++.++| .| +|..||.+++|+|+.+..+|. +.+++|+|+ +.|.+++++|
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtAS----AD------hTA~iWs~Esg~CL~~Y~GH~----GSVNsikfh-~s~~L~lTaS 209 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTAS----AD------HTARIWSLESGACLATYTGHT----GSVNSIKFH-NSGLLLLTAS 209 (481)
T ss_pred cccccceeeehhhcCCcceeecc----cc------cceeEEeeccccceeeecccc----cceeeEEec-cccceEEEcc
Confidence 67888999999877666888855 56 899999999999987666555 455699997 8999999999
Q ss_pred CCCcEEEEeCC----CCeEE--EEec--------CCCEeEEEEeCCCc-eeEEEEEcCCCcEEEEEeeCCcceeeEEEEc
Q 012410 206 QDSIYKVFDLK----NYTML--YSIS--------DKHVQEIKIRSSSH-VPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 206 ~D~tiKlWdl~----tg~~l--~tl~--------~~~V~~Vafs~s~d-~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~ 270 (464)
.|+|..||... ..+.. ...+ ++.+....-+-..| .+|++ .|..|++|...|-..+|..
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee-------eeeeeeccccceEehhhhc
Confidence 99999999722 11110 0111 11111111111122 34554 6777888767777777766
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcC
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHP 347 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~ 347 (464)
.+++++++|.|.|..||||++|+.++.|.||.....-+.-.|..++++++| |.|.|||||+ =.-+..|.||+.-
T Consensus 283 -gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt-- 359 (481)
T KOG0300|consen 283 -GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT-- 359 (481)
T ss_pred -CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc--
Confidence 467888899999999999999999999999999999888899999999999 9999999995 4467899999997
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
|.++.|.-| +.++|||+ |.|||+||+.+=+ .|+||+-.+
T Consensus 360 ---VTS~vF~~d-d~vVSgSD-----------DrTvKvWdLrNMRsplATIRtdS------------------------- 399 (481)
T KOG0300|consen 360 ---VTSVVFNTD-DRVVSGSD-----------DRTVKVWDLRNMRSPLATIRTDS------------------------- 399 (481)
T ss_pred ---eeEEEEecC-CceeecCC-----------CceEEEeeeccccCcceeeecCC-------------------------
Confidence 889999876 55789987 9999999997743 578887654
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+.-|+.+--+.+||---++..|||+|+
T Consensus 400 ----------~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 400 ----------PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ----------ccceeEeecCCceEEeccCCceEEEEec
Confidence 5666777777778888888888888874
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=3.2e-24 Score=207.89 Aligned_cols=259 Identities=15% Similarity=0.174 Sum_probs=215.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
|-+|..++.||.--+-+=.||--|-++ .+|...||+-..+.|.-.-|+ ++.| -+.++||.-+|.-+
T Consensus 29 g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~na~~aas----aaad------ftakvw~a~tgdel--- 94 (334)
T KOG0278|consen 29 GYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKNATRAAS----AAAD------FTAKVWDAVTGDEL--- 94 (334)
T ss_pred ceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCchhhhhhh----hccc------chhhhhhhhhhhhh---
Confidence 888999999997777777899999999 569999999999998766666 4455 57889999999964
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEE--ecCCCEeEEEE--------eCCCceeEEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYS--ISDKHVQEIKI--------RSSSHVPLKILS 246 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~t--l~~~~V~~Vaf--------s~s~d~tIklWd 246 (464)
++.++---+.+|+|+ .|.+.|.+|++++.+||+|++..+- ... -+...|+.+-| |...|+||||||
T Consensus 95 --hsf~hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 95 --HSFEHKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD 171 (334)
T ss_pred --hhhhhhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence 333322113389998 7999999999999999999986553 233 33567888877 447899999999
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
..||+..++|+.. +++.++..+++ +.+++-...+.|+.||..+-.+++...--. .|.+...+|+...|++|+ |.-
T Consensus 172 ~rTgt~v~sL~~~-s~VtSlEvs~d--G~ilTia~gssV~Fwdaksf~~lKs~k~P~-nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 172 HRTGTEVQSLEFN-SPVTSLEVSQD--GRILTIAYGSSVKFWDAKSFGLLKSYKMPC-NVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred eccCcEEEEEecC-CCCcceeeccC--CCEEEEecCceeEEeccccccceeeccCcc-ccccccccCCCceEEecCcceE
Confidence 9999999999865 78899998875 788888888999999999998887655332 477888999999999999 999
Q ss_pred EEEEeC-CCceEEEe-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 326 VAVWNF-RGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 326 IklWd~-~Ge~l~tl-~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+.-+|+ +|+.+-.+ +||-.. |-+|.|||||.+-||||. |||||||....|+-
T Consensus 248 ~~kfDy~TgeEi~~~nkgh~gp-----VhcVrFSPdGE~yAsGSE-----------DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 248 VYKFDYNTGEEIGSYNKGHFGP-----VHCVRFSPDGELYASGSE-----------DGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEeccCCceeeecccCCCCc-----eEEEEECCCCceeeccCC-----------CceEEEEEecCCCc
Confidence 999999 79999987 899988 889999999999999986 99999999866664
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-22 Score=200.18 Aligned_cols=262 Identities=14% Similarity=0.164 Sum_probs=205.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ- 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~- 206 (464)
....|.|+.|+++|+.|++ +++| -+++|+|...|++..+..-...+ +.-+.|-+++- .+..+|.
T Consensus 13 ~~~~i~sl~fs~~G~~lit----ss~d------Dsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~-~~i~sStk 77 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLIT----SSED------DSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSN-TVIHSSTK 77 (311)
T ss_pred CCCceeEEEecCCCCEEEE----ecCC------CeEEEEEcCCCceeeEeeccccc----ccEEEEecCCc-eEEEccCC
Confidence 3456999999999999999 3344 49999999999986543333221 33688876554 5555666
Q ss_pred -CCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 207 -DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 207 -D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
|.|||.=+|.+-+.++.+. .+.|.+|..+| +.|.||++||+..-+|+.-+.- ..-.-+||.|. |.
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~--GL 153 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPE--GL 153 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCC--Cc
Confidence 9999999999999999887 46799999987 5789999999998888877753 23356788885 55
Q ss_pred EEE-EeCCCeEEEEECCCCc--EEEEcc---cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcC
Q 012410 276 LLV-KQENENLQILDVRNAE--LMEVSR---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP 347 (464)
Q Consensus 276 lla-~s~D~tIkIWDv~tg~--~l~~l~---gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~ 347 (464)
++| +...+.|||+|++.-. ...++. +-......+-|||||+.++-+. .+-|.|-|. +|..+.+|++|.+.-.
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 555 5555699999999842 333322 2345667889999999988877 889999998 9999999999987521
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc-CCCCCCcccccCCCCCCcccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-h~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
. --+..|+|||+++++|+. ||+|.+|+++||+-+..++| |..
T Consensus 234 ~--~~~a~ftPds~Fvl~gs~-----------dg~i~vw~~~tg~~v~~~~~~~~~------------------------ 276 (311)
T KOG1446|consen 234 L--PLSATFTPDSKFVLSGSD-----------DGTIHVWNLETGKKVAVLRGPNGG------------------------ 276 (311)
T ss_pred c--ceeEEECCCCcEEEEecC-----------CCcEEEEEcCCCcEeeEecCCCCC------------------------
Confidence 1 137889999999999986 99999999999999999999 454
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
.+..+-|+|---.+||++.
T Consensus 277 ----------~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 277 ----------PVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred ----------CccccccCCceeeeeecCc
Confidence 6778889999998888874
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.4e-23 Score=217.40 Aligned_cols=259 Identities=10% Similarity=0.139 Sum_probs=214.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
.|+||.+ ....+-+|+..+|+-..-+.++ .+.|.||.|+++|..||+ +..+ +++.|||+.+.+.....
T Consensus 188 ~n~laVa-lg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~Lav----G~~~------g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 188 ANVLAVA-LGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAV----GTSD------GTVQIWDVKEQKKTRTL 255 (484)
T ss_pred CCeEEEE-ecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEE----eecC------CeEEEEehhhccccccc
Confidence 3444433 2337899998999844444333 788999999999999999 7777 89999999887776554
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE-ec--CCCEeEEEEeC--------CCceeEEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-IS--DKHVQEIKIRS--------SSHVPLKILS 246 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t-l~--~~~V~~Vafs~--------s~d~tIklWd 246 (464)
.+. +..++++++++ +..|.+|+.|+.|..+|+...+.+.. +. ...|-.+++++ +.|..+.|||
T Consensus 256 ~~~---h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 256 RGS---HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred cCC---cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 442 33667799995 67999999999999999998876644 43 56799999976 4889999999
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE--eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEE-e-
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R- 322 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~--s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~-s- 322 (464)
..+-+.+.++..|...|+.++|.|...+.||+| +.|++|++||+.+|++++...+. ..|.+++||+..+-|+++ +
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCC
Confidence 988888889987779999999999878888885 39999999999999999987765 479999999888655554 4
Q ss_pred -CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 323 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 323 -D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+..|.||+. +=+.+..|.||+.. |-.++.||||..|++|+. |.|+|+|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~la~SPdg~~i~t~a~-----------DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTSR-----VLYLALSPDGETIVTGAA-----------DETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcce-----eEEEEECCCCCEEEEecc-----------cCcEEeccccCC
Confidence 889999999 78999999999998 889999999999999986 999999998764
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.6e-24 Score=226.43 Aligned_cols=250 Identities=12% Similarity=0.175 Sum_probs=195.7
Q ss_pred EEEec-cceeehhccCCeEEeeeccccc------EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 93 EIVAA-RDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 93 ~~~~a-g~~l~~l~~~g~~~~~~~~~g~------~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
+.-++ +++|+++..||++++|++.+-. .+..+ ..|.+||..++.--+|+.||++| + | -||++
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~~tlIS~S---s-D------tTVK~ 99 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNGKTLISAS---S-D------TTVKV 99 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCCCceEEec---C-C------ceEEE
Confidence 33344 6789999999999999866533 37777 55999999999999999999977 3 3 59999
Q ss_pred EEeccCC--CCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEecCCCEeEEEEeCCCcee
Q 012410 166 EYIRRGK--PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKIRSSSHVP 241 (464)
Q Consensus 166 ~~i~~G~--~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~~~~V~~Vafs~s~d~t 241 (464)
|+...+. |..+..-|. .++-.+|.-.+|..+.|||+-|+.|+|||+++|. ++.++..-.+.++.
T Consensus 100 W~~~~~~~~c~stir~H~----DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~-------- 167 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHK----DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG-------- 167 (735)
T ss_pred eecccCcchhHhhhhccc----chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC--------
Confidence 9987763 333333333 3444788733788899999999999999999984 44443221111111
Q ss_pred EEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEE
Q 012410 242 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 320 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS 320 (464)
. ++-..++++|-.+ ++.+++ |+..+-||+||.++++.+.-|+||++-|+.+..++||..++|
T Consensus 168 -------s--------G~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls 230 (735)
T KOG0308|consen 168 -------S--------GPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS 230 (735)
T ss_pred -------C--------CCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEee
Confidence 0 2224556776544 245555 679999999999999999999999999999999999999999
Q ss_pred Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEE
Q 012410 321 FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKI 397 (464)
Q Consensus 321 ~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl 397 (464)
+| |+||||||+ .-+|++|+.-|... ||+++-+|+=+.+.||+. ||.|..=|+.+ .+|....
T Consensus 231 ~sSDgtIrlWdLgqQrCl~T~~vH~e~-----VWaL~~~~sf~~vYsG~r-----------d~~i~~Tdl~n~~~~tlic 294 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCLATYIVHKEG-----VWALQSSPSFTHVYSGGR-----------DGNIYRTDLRNPAKSTLIC 294 (735)
T ss_pred cCCCceEEeeeccccceeeeEEeccCc-----eEEEeeCCCcceEEecCC-----------CCcEEecccCCchhheEee
Confidence 99 999999999 69999999999987 999999999999999986 99999999888 5665544
Q ss_pred c
Q 012410 398 N 398 (464)
Q Consensus 398 ~ 398 (464)
+
T Consensus 295 k 295 (735)
T KOG0308|consen 295 K 295 (735)
T ss_pred c
Confidence 3
No 86
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7.4e-25 Score=234.44 Aligned_cols=210 Identities=13% Similarity=0.230 Sum_probs=186.9
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEEEE--ecCCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l~t--l~~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
..++.|+.|+.|..+-||.+..-.++.+ ++...|.+|.|++ +.+++||+||+|.++.++||.+|+..+-+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~s 117 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITS 117 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcce
Confidence 3568889999999998999877666654 4577899999986 48899999999999999999988888899
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
|+|+| ++++.+.++.|..++|||.+-.-|.++..+|...|..+.|+|||++++++. |.+|||||. .|+++++|++|.
T Consensus 118 v~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e 196 (825)
T KOG0267|consen 118 VDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE 196 (825)
T ss_pred eeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc
Confidence 99999 577777789999999999998899999999999999999999999999999 899999999 599999999999
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.. +.++-|+|..-+|++||. |+||++||++|=+.+-...+-..
T Consensus 197 ~~-----v~sle~hp~e~Lla~Gs~-----------d~tv~f~dletfe~I~s~~~~~~--------------------- 239 (825)
T KOG0267|consen 197 GK-----VQSLEFHPLEVLLAPGSS-----------DRTVRFWDLETFEVISSGKPETD--------------------- 239 (825)
T ss_pred cc-----ccccccCchhhhhccCCC-----------CceeeeeccceeEEeeccCCccC---------------------
Confidence 87 789999999999999986 99999999988777665544433
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
.|.+++|+|||..+++|-.+
T Consensus 240 -------------~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 240 -------------GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred -------------CceeeeecCCceeeecCchh
Confidence 89999999999999999654
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=187.25 Aligned_cols=278 Identities=10% Similarity=0.165 Sum_probs=213.7
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe------ccCCCCCccc---ceee--ccccCceEEEEeC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI------RRGKPDSGFA---LFES--ESLKWPGFVEFDD 195 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i------~~G~~~~~~~---l~~~--~~~~~~~~VaFs~ 195 (464)
.....|++|+|.|+|...|+ ++.. +|.+|-.. +.+..-..++ ++.. -+.+.+..+++|
T Consensus 30 ~dsqairav~fhp~g~lyav----gsns------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws- 98 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAV----GSNS------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS- 98 (350)
T ss_pred cchhheeeEEecCCCceEEe----ccCC------ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-
Confidence 34567999999999999988 4555 56666532 2222211111 1111 123445579998
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEE-------EEecCCCEeEEEEe--C-----------CCceeEEEEEcCCCcEEEE
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTML-------YSISDKHVQEIKIR--S-----------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l-------~tl~~~~V~~Vafs--~-----------s~d~tIklWdi~tG~~l~t 255 (464)
|+|++||+||.|++||+--.+.-+|- ..++++.|++++|- | ..|..|.+=|-.+|+.++.
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 99999999999999999776644442 45568899999992 1 2788999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-------CCceEEEEEcCCCcEEEEEe-CCeEE
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFR-NRTVA 327 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-------~~~v~sv~FspdgqllaS~s-D~TIk 327 (464)
+.+|+.++.++.-- .|-.+++||.|+|||.||++-..|++++... ...|.+|+.-|.|++||||- |....
T Consensus 179 ~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 179 LSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred ecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceE
Confidence 99887888666532 2445566889999999999999999987542 35788999999999999999 99999
Q ss_pred EEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 328 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 328 lWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
|+|++ |+.++.|.-|+.- |.+|.|||--.+|.++|. |..|||=|+ .|..-+.|.
T Consensus 257 lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~sy-----------d~~ikltdl-qgdla~el~-------- 311 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSY-----------DMKIKLTDL-QGDLAHELP-------- 311 (350)
T ss_pred EEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEecc-----------cceEEEeec-ccchhhcCc--------
Confidence 99995 8899999999987 899999999999999998 999999996 444322221
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
...++|+-..+-.+-|.|+.--..|.|.|.|+.||-
T Consensus 312 ---------------------~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 312 ---------------------IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred ---------------------eEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 012223333677789999999999999999999995
No 88
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.91 E-value=4.9e-21 Score=182.44 Aligned_cols=273 Identities=15% Similarity=0.298 Sum_probs=213.0
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC-CCCcccceeeccccCceEEEE-eCCCCc-EEE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK-PDSGFALFESESLKWPGFVEF-DDVNGK-VLT 202 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~-~~~~~~l~~~~~~~~~~~VaF-s~pdGk-~La 202 (464)
..|...+.++.|++.+..++..+ .+ ..+.+|+...+. ....+..... .....+.+ + +++. +++
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~----~d------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~ 127 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGS----SD------GTIKLWDLDNGEKLIKSLEGLHD---SSVSKLALSS-PDGNSILL 127 (466)
T ss_pred eeccceEEEEEECCCCcEEEEec----CC------CcEEEEEcCCCceeEEEEeccCC---CceeeEEEEC-CCcceEEe
Confidence 45888899999999999998844 44 689999987775 2221111110 12224444 5 7887 666
Q ss_pred EecC-CCcEEEEeCCC-CeEEEEec--CCCEeEEEEeCC--------C-ceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 203 YSAQ-DSIYKVFDLKN-YTMLYSIS--DKHVQEIKIRSS--------S-HVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 203 Sgs~-D~tiKlWdl~t-g~~l~tl~--~~~V~~Vafs~s--------~-d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
..+. |+++++||+.+ +..+..+. ...|..++|+|+ . |.++++|++.++..+.++.+|...+..++|+
T Consensus 128 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred ccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence 6555 99999999987 66665554 578999999873 2 8999999999999999999777889999999
Q ss_pred ccCCCeEEEE-eCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc-eEEEeccCCC
Q 012410 270 EQFNEKLLVK-QENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-LVTSFEDHLL 344 (464)
Q Consensus 270 ~~~~~~lla~-s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge-~l~tl~gH~~ 344 (464)
|. +..++++ +.|++|++||..+++++. .+.+|...+ --.|+|++..+++++ |+++++||.. .. ++..+.+|..
T Consensus 208 ~~-~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (466)
T COG2319 208 PD-GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285 (466)
T ss_pred CC-cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence 64 4445555 899999999999999999 799998775 337999999999888 9999999984 33 3666688877
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc--cCCCCCCcccccCCCCCCcccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN--ATNCSPKVDDELGSSSTGKSKKLN 422 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~--gh~~~~~~~~~~~~~~~~~~~~~~ 422 (464)
+ |.++.|+|++..+++++. |+++++||+.++....... +|..
T Consensus 286 ~-----v~~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 329 (466)
T COG2319 286 S-----VLSVAFSPDGKLLASGSS-----------DGTVRLWDLETGKLLSSLTLKGHEG-------------------- 329 (466)
T ss_pred c-----EEEEEECCCCCEEEEeeC-----------CCcEEEEEcCCCceEEEeeecccCC--------------------
Confidence 7 889999999999999765 7889999999999888876 6764
Q ss_pred ccccccccccccccCEEEEEEcCCCCEEEEe-eCCCcEEeccC
Q 012410 423 KSSYIRSTVGEALEDITSLFYDEERNEIYTG-NRHGLVHVWSN 464 (464)
Q Consensus 423 ~~~~~~~~~~~~l~~V~slafspDg~~LaSg-s~DgtVrlWd~ 464 (464)
.|..+.|+|++..++.+ ..|+.+++|+.
T Consensus 330 --------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 330 --------------PVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred --------------ceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 68889995454566666 78899999873
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-23 Score=217.60 Aligned_cols=221 Identities=17% Similarity=0.179 Sum_probs=185.0
Q ss_pred ceEEEEeC--CCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEE
Q 012410 188 PGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 188 ~~~VaFs~--pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~t 255 (464)
+.+++||+ |+.-..|++ -.+.|++..+..-++++. .+.|.++.|.. +..+-|||+|+.+-..|+.
T Consensus 29 vssl~fsp~~P~d~aVt~S---~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSS---VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred ceeEecCCCCCCceEEecc---cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 44899984 222133333 368999998888888877 68899999974 4668899999888778899
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCC-
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR- 332 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~- 332 (464)
+..|.+++..+.|.|+++..+++|++|+.+|+||+.++.-...+.||++.|++.+|+|... +++||| ||+||+||.+
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 9988899999999998776666688999999999999997558999999999999998765 999999 9999999983
Q ss_pred -CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccCCCCCCccccc
Q 012410 333 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDEL 410 (464)
Q Consensus 333 -Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh~~~~~~~~~~ 410 (464)
++.+.+| +|..+ |.+|.|=|.|.+|||++ -..||+||+.+|. .+.....|..
T Consensus 186 ~~~~v~el-nhg~p-----Ve~vl~lpsgs~iasAg------------Gn~vkVWDl~~G~qll~~~~~H~K-------- 239 (487)
T KOG0310|consen 186 LTSRVVEL-NHGCP-----VESVLALPSGSLIASAG------------GNSVKVWDLTTGGQLLTSMFNHNK-------- 239 (487)
T ss_pred CCceeEEe-cCCCc-----eeeEEEcCCCCEEEEcC------------CCeEEEEEecCCceehhhhhcccc--------
Confidence 6777777 46655 89999999999999987 4789999998664 4444444875
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|.|..|++.|+|||-|+-|+++|
T Consensus 240 --------------------------tVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 240 --------------------------TVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred --------------------------eEEEEEeecCCceEeecccccceEEEE
Confidence 899999999999999999999999987
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=6.1e-23 Score=213.58 Aligned_cols=292 Identities=17% Similarity=0.225 Sum_probs=215.1
Q ss_pred hccccceEEEEec---cceeehhccCCeEEeeeccccc-----EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCc
Q 012410 85 LMKRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS 156 (464)
Q Consensus 85 l~~~s~v~~~~~a---g~~l~~l~~~g~~~~~~~~~g~-----~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs 156 (464)
|.-.+++....+. |--+++++.|-+++.|| .+|. ..+.|.....+.|+|+.||+.|+.+.++| ++.
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wD-f~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs--g~a--- 236 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWD-FQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS--GSA--- 236 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEe-cccccccchhhhccCcccccccceeeecCCCCeEEEEe--cCc---
Confidence 4455666655554 88999999999999999 5554 45567788889999999999999999977 443
Q ss_pred ccceeeEEEEEeccCCCCC-------------cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EE
Q 012410 157 SLKCRSTKIEYIRRGKPDS-------------GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LY 222 (464)
Q Consensus 157 ~L~~~ti~l~~i~~G~~~~-------------~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~ 222 (464)
+++|.| +.|.... ..++|. .-..+.+|.+-+-....++|.|+|+|+||+.+-+- +.
T Consensus 237 -----qakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHi----a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 237 -----QAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHI----AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred -----ceeEEc-cCCceeeeeeccchhhhhhhccCCce----eeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 677776 5554311 112222 22226888755556777899999999999976432 11
Q ss_pred EecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEc
Q 012410 223 SISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVS 299 (464)
Q Consensus 223 tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l 299 (464)
.+.. .+ +.| .--.+.+.+|+++ +..|++|..||.|++||..+-- -+.+-
T Consensus 307 Vik~--------k~-----------~~g--------~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 307 VIKT--------KP-----------AGG--------KRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred EEee--------cc-----------CCC--------cccCceeeecCCC-cchhhhcccCCceeeeecCCcccccceEee
Confidence 1110 00 011 0123377889884 4455667899999999964322 23345
Q ss_pred ccCCC--ceEEEEEcCCCcEEEEEe-CCeEEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 300 RTEFM--TPSAFIFLYENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 300 ~gh~~--~v~sv~FspdgqllaS~s-D~TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
..|.. .+++|+|||||+.|||=+ |.|+||||+ + -++|.+.+|-.+..+ -.+++||||.++|++|.. .++++
T Consensus 359 ~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~---~tdc~FSPd~kli~TGtS-~~~~~ 434 (641)
T KOG0772|consen 359 DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP---GTDCCFSPDDKLILTGTS-APNGM 434 (641)
T ss_pred eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC---CCccccCCCceEEEeccc-ccCCC
Confidence 67876 899999999999999999 999999999 4 899999999888655 346899999999999974 34443
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
..|++-++|-.|=+.+++|.-.+. .|..+.|+|-=+.|.-|+
T Consensus 435 ----~~g~L~f~d~~t~d~v~ki~i~~a----------------------------------Svv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 435 ----TAGTLFFFDRMTLDTVYKIDISTA----------------------------------SVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ----CCceEEEEeccceeeEEEecCCCc----------------------------------eEEEEeecchhhheeeec
Confidence 267999999999999988854443 788899999999999999
Q ss_pred CCCcEEec
Q 012410 455 RHGLVHVW 462 (464)
Q Consensus 455 ~DgtVrlW 462 (464)
.||++||+
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999986
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=5.8e-23 Score=199.97 Aligned_cols=223 Identities=13% Similarity=0.182 Sum_probs=189.6
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec----CCCEeEEEEeC---------CCceeEEEEEcCCC
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKIRS---------SSHVPLKILSIEDG 250 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~---------s~d~tIklWdi~tG 250 (464)
+.+++.+|+|+ -||..||+||.|++++||++.-+..++.+. +..|-.++..| +.|.+|++||+..|
T Consensus 19 ~~~~v~Sv~wn-~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 19 HVQKVHSVAWN-CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhcceEEEEc-ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 44566699997 799999999999999999999887665443 34577777754 58999999999999
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEE
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklW 329 (464)
+|....+.. ..+.-+.++| ++++++++..|.-|-..|+++-+.++..+-- -.+..++|+.++.+|.-.. .|+|.|-
T Consensus 98 k~~~~i~~~-~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 98 KCTARIETK-GENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred cEEEEeecc-CcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhccc-ceeeeeeecCCCCEEEEecCCceEEEE
Confidence 999988743 5567788888 5789999999999999999999887765433 3567788987777766655 9999999
Q ss_pred eC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 330 NF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 330 d~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
.. .-+.++++..|..- ...|.|+|+|+++|.||. |-.+-|||+..=-|++.|.-|.-
T Consensus 175 sypsLkpv~si~AH~sn-----CicI~f~p~GryfA~GsA-----------DAlvSLWD~~ELiC~R~isRldw------ 232 (313)
T KOG1407|consen 175 SYPSLKPVQSIKAHPSN-----CICIEFDPDGRYFATGSA-----------DALVSLWDVDELICERCISRLDW------ 232 (313)
T ss_pred eccccccccccccCCcc-----eEEEEECCCCceEeeccc-----------cceeeccChhHhhhheeeccccC------
Confidence 98 79999999999854 458999999999999986 99999999999999999988875
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
+|..|.||-||+.|||||+|..|-
T Consensus 233 ----------------------------pVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 233 ----------------------------PVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred ----------------------------ceEEEEeccCcceeeccCccceEE
Confidence 899999999999999999999874
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2e-23 Score=210.20 Aligned_cols=274 Identities=13% Similarity=0.137 Sum_probs=212.7
Q ss_pred eeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 121 ICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
++.| -+|.+-|.+++=+|+- ..+++ ++.| +.++|||+.+..+..++.-|. |-+..+.++ ++
T Consensus 59 v~~L-~gHrdGV~~lakhp~~ls~~aS----Gs~D------G~VkiWnlsqR~~~~~f~AH~----G~V~Gi~v~--~~- 120 (433)
T KOG0268|consen 59 VGSL-DGHRDGVSCLAKHPNKLSTVAS----GSCD------GEVKIWNLSQRECIRTFKAHE----GLVRGICVT--QT- 120 (433)
T ss_pred hhhc-cccccccchhhcCcchhhhhhc----cccC------ceEEEEehhhhhhhheeeccc----CceeeEEec--cc-
Confidence 4455 5588889999999965 44555 6667 799999999998876665554 344478886 34
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEecC-CCEeEEEEeC------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIRS------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 272 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~~Vafs~------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~ 272 (464)
-..++++|+|||.|-+. |..++++.+ ..+..|.-.- ..-..|.|||.+--..+++++-....+.+|.|+|..
T Consensus 121 ~~~tvgdDKtvK~wk~~-~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKID-GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred ceEEecCCcceeeeecc-CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc
Confidence 55678999999999874 457777763 3345554421 122359999999899999998434778999999963
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCC
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDC 349 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~ 349 (464)
-..|+++..|+.|-|+|++++..++-..- .+...+++|+|++-.|++++ |..+-..|.+ -+.+....||.+.
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---- 274 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---- 274 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhccccee----
Confidence 33344456999999999999998874332 36678899999999999999 9999999984 7789999999988
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccc
Q 012410 350 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 429 (464)
Q Consensus 350 ~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (464)
|.+|.|||.|+-++|||. |.||||+.+..|..--+. |+
T Consensus 275 -V~dVdfsptG~Efvsgsy-----------DksIRIf~~~~~~SRdiY--ht---------------------------- 312 (433)
T KOG0268|consen 275 -VMDVDFSPTGQEFVSGSY-----------DKSIRIFPVNHGHSRDIY--HT---------------------------- 312 (433)
T ss_pred -EEEeccCCCcchhccccc-----------cceEEEeecCCCcchhhh--hH----------------------------
Confidence 889999999999999998 999999997544322211 11
Q ss_pred cccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 430 TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 430 ~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+-++.|.+|.||-|.+.|.|||+|+.||||.
T Consensus 313 ---kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 313 ---KRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ---hhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 2345899999999999999999999999995
No 93
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=196.88 Aligned_cols=252 Identities=13% Similarity=0.165 Sum_probs=192.0
Q ss_pred ccCCeEEeeecccccEeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cCCCCCcccceee
Q 012410 105 AHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFALFES 182 (464)
Q Consensus 105 ~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G~~~~~~~l~~~ 182 (464)
.-.|.+-+-++..++.|..++. --++-+..|++|++.+..+.+. ++| .+++|||.. .-+++..++-|..
T Consensus 35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a--~GD-------GSLrl~d~~~~s~Pi~~~kEH~~ 105 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA--SGD-------GSLRLFDLTMPSKPIHKFKEHKR 105 (311)
T ss_pred ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE--ecC-------ceEEEeccCCCCcchhHHHhhhh
Confidence 3445666666544555555433 2346689999999876655532 455 499999942 1222333343333
Q ss_pred ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC---------CCceeEEEEEcC-CC
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS---------SSHVPLKILSIE-DG 250 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~---------s~d~tIklWdi~-tG 250 (464)
| +.+|.++..+++.+.++|.|+||||||..-++-+.|+.+ .-|...+||| ++|++++|||+. -|
T Consensus 106 E----V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g 181 (311)
T KOG0277|consen 106 E----VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG 181 (311)
T ss_pred h----eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC
Confidence 3 348999888999999999999999999998888888874 5699999987 699999999986 57
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeE
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTV 326 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TI 326 (464)
+.+. ++-|...+-+.+|+.. +..+++ |+.|+.||+||+++- ..+-+|.||.-.|+.|.|||-- .+|||+| |=|+
T Consensus 182 k~~~-i~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 182 KFMS-IEAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred ceeE-EEeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceE
Confidence 7766 5544367899999885 555555 789999999999984 4678899999999999999864 5789999 9999
Q ss_pred EEEeCC--CceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 327 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 327 klWd~~--Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
||||.. -.++.+.+-|+.. |..+.||+ ++.++||.+- |++++||+
T Consensus 260 riw~~~~~ds~~e~~~~HtEF-----v~g~Dws~~~~~~vAs~gW-----------De~l~Vw~ 307 (311)
T KOG0277|consen 260 RIWDPERQDSAIETVDHHTEF-----VCGLDWSLFDPGQVASTGW-----------DELLYVWN 307 (311)
T ss_pred EecccccchhhhhhhhccceE-----EeccccccccCceeeeccc-----------ccceeeec
Confidence 999983 4477788889887 55677776 6778998876 99999998
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=8.2e-22 Score=218.51 Aligned_cols=278 Identities=12% Similarity=0.096 Sum_probs=209.3
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCC----CCcc--ccee-eccccCceEEEEeCCC
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKP----DSGF--ALFE-SESLKWPGFVEFDDVN 197 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~----~~~~--~l~~-~~~~~~~~~VaFs~pd 197 (464)
..++..|.||..+|||..+|| ++.. ++ ..+.||.... .+. +... .+.+ ..|.+-+.+|.|+ ||
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aT----gGq~---~d-~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S-~d 80 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFAT----GGQV---LD-GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS-PD 80 (942)
T ss_pred ccCCeeEEEEEecCCceeEec----CCcc---cc-ccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC-CC
Confidence 445567899999999999988 5411 22 3444887521 111 1111 1222 1244555589998 99
Q ss_pred CcEEEEecCCCcEEEEeCCC-------C-----------eEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCC
Q 012410 198 GKVLTYSAQDSIYKVFDLKN-------Y-----------TMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIED 249 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~t-------g-----------~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~t 249 (464)
|++|||||.|+.|.||+... | ++..+|. +..|.+|+++| +.|.+|-|||..|
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc
Confidence 99999999999999999872 1 1444444 67899999998 4889999999999
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC------ceEEEEEcCCCcEEEEEe-
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM------TPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~------~v~sv~FspdgqllaS~s- 322 (464)
.++++++++|...|+.|.|-|- |.++++-++|++|++|+..+-.+.+...+++. ...-+.|||||+.|+|.-
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred ceeeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999988899999999885 44555557999999999777778887777764 345678999999999975
Q ss_pred -CC---eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC-----CC------------EEEEEecCCCccccccCCC
Q 012410 323 -NR---TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD-----QD------------LIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 323 -D~---TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD-----g~------------~LaSgs~~~~~~~~~~s~D 380 (464)
++ +|.|-+- +-++-..|-||... |.-+.|+|- .+ .+|+||. |
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p-----~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq-----------D 303 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSAP-----VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ-----------D 303 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCCc-----eEEEEeChHHhccccccCCccCCCcceEEEEEecC-----------C
Confidence 44 8999886 35567799999997 788999981 22 6777776 9
Q ss_pred CeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 381 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 381 gtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
++|-||+...-+.+..++.-.+ ..|..++|||||-.|.-+|.||+|.
T Consensus 304 rSlSVW~T~~~RPl~vi~~lf~---------------------------------~SI~DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNLFN---------------------------------KSIVDMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred ccEEEEecCCCCchhhhhhhhc---------------------------------CceeeeeEcCCCCeEEEEecCCeEE
Confidence 9999999765565554432222 1789999999999999999999998
Q ss_pred ec
Q 012410 461 VW 462 (464)
Q Consensus 461 lW 462 (464)
+-
T Consensus 351 ~i 352 (942)
T KOG0973|consen 351 LI 352 (942)
T ss_pred EE
Confidence 74
No 95
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=1.5e-20 Score=179.12 Aligned_cols=225 Identities=16% Similarity=0.305 Sum_probs=187.5
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEecC---CCEeEEEE-eC----------CCceeEEEEEcCC-C
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD---KHVQEIKI-RS----------SSHVPLKILSIED-G 250 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~~---~~V~~Vaf-s~----------s~d~tIklWdi~t-G 250 (464)
.+..+.|+ +++..++.++.|+.+++|+...+. .+..+.. ..+..+.+ ++ ..|+.+++|++++ +
T Consensus 67 ~i~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 145 (466)
T COG2319 67 SITSIAFS-PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145 (466)
T ss_pred eEEEEEEC-CCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence 34478996 899999999999999999998886 5555553 24665555 32 2478999999998 7
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEEEeC-CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEE
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVA 327 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~-D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIk 327 (464)
.....+..+...+..++|+|. +..+++++. |+++++||+.++..+.++.+|...|..++|+|++. ++++++ |++|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred eEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 888888877688899999995 445666664 99999999999999999999999999999999998 666657 99999
Q ss_pred EEeC-CCceEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEccCCCCC
Q 012410 328 VWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSP 404 (464)
Q Consensus 328 lWd~-~Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gh~~~~ 404 (464)
+||. .|+++. .+.+|... + ...|+|++.++++++. |+++++||+..... +..+.+|..
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~-- 285 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDS-----V-VSSFSPDGSLLASGSS-----------DGTIRLWDLRSSSSLLRTLSGHSS-- 285 (466)
T ss_pred EEECCCCcEEeeecCCCCcc-----e-eEeECCCCCEEEEecC-----------CCcEEEeeecCCCcEEEEEecCCc--
Confidence 9999 599999 79999875 3 2379999999998776 99999999987775 777667764
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.++.|+|++..+++++.|+++++||.
T Consensus 286 --------------------------------~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 286 --------------------------------SVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred --------------------------------cEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 8999999999999999999999999963
No 96
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.2e-23 Score=203.20 Aligned_cols=187 Identities=18% Similarity=0.270 Sum_probs=160.6
Q ss_pred CCCEeEEEE--------eCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEE------CC
Q 012410 226 DKHVQEIKI--------RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD------VR 291 (464)
Q Consensus 226 ~~~V~~Vaf--------s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWD------v~ 291 (464)
.+.||.|+. +++.|+|.+||.+|+|.||.+..+|.+.|.+|.|+++ +..+|++|.|+|..||. +-
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~av~~~vP 226 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKAAVNWEVP 226 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc-cceEEEccCCcchHHHHHhhcCcCC
Confidence 456777766 3479999999999999999999999999999999984 45556689999999996 21
Q ss_pred C------------------------------Cc----EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCce
Q 012410 292 N------------------------------AE----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL 335 (464)
Q Consensus 292 t------------------------------g~----~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~ 335 (464)
+ |. .+..|.||...|.+..|+..|+.++++| |+|.-|||+ +|++
T Consensus 227 ~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~ 306 (481)
T KOG0300|consen 227 SNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV 306 (481)
T ss_pred CCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCce
Confidence 1 11 2335788998899999999999999999 999999999 7999
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEEccCCCCCCcccccCCCC
Q 012410 336 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 336 l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
++.|.||..- .+-+.-+|.++++++.|. |-|.||||...- +.+..|+||++
T Consensus 307 v~~LtGHd~E-----LtHcstHptQrLVvTsSr-----------DtTFRLWDFReaI~sV~VFQGHtd------------ 358 (481)
T KOG0300|consen 307 VNILTGHDSE-----LTHCSTHPTQRLVVTSSR-----------DTTFRLWDFREAIQSVAVFQGHTD------------ 358 (481)
T ss_pred eccccCcchh-----ccccccCCcceEEEEecc-----------CceeEeccchhhcceeeeeccccc------------
Confidence 9999999987 567778999999999987 999999998643 56889999997
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|+++.|.-|.+ ++|||+|.||||||+
T Consensus 359 ----------------------tVTS~vF~~dd~-vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 359 ----------------------TVTSVVFNTDDR-VVSGSDDRTVKVWDL 385 (481)
T ss_pred ----------------------ceeEEEEecCCc-eeecCCCceEEEeee
Confidence 899999998876 899999999999985
No 97
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.1e-21 Score=209.54 Aligned_cols=301 Identities=16% Similarity=0.141 Sum_probs=220.6
Q ss_pred ehhccCCeEEeeecccc--cEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCCCC---
Q 012410 102 FALAHSGVCAAFSRETN--RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS--- 175 (464)
Q Consensus 102 ~~l~~~g~~~~~~~~~g--~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~--- 175 (464)
|....+..+.+|.-.++ ++.+.| .+|.+||++++|+..+. .+..+| ++.| +.||||.|.-+....
T Consensus 163 a~Ggs~~~v~~~s~~~d~f~~v~el-~GH~DWIrsl~f~~~~~~~~~laS--~SQD------~yIRiW~i~~~~~~~~~~ 233 (764)
T KOG1063|consen 163 ACGGSKFVVDLYSSSADSFARVAEL-EGHTDWIRSLAFARLGGDDLLLAS--SSQD------RYIRIWRIVLGDDEDSNE 233 (764)
T ss_pred EecCcceEEEEeccCCcceeEEEEe-eccchhhhhhhhhccCCCcEEEEe--cCCc------eEEEEEEEEecCCccccc
Confidence 33334446677732222 577888 56999999999999887 555555 8888 999999996555110
Q ss_pred ---------ccccee---------------eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC--CCeEEEEec----
Q 012410 176 ---------GFALFE---------------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS---- 225 (464)
Q Consensus 176 ---------~~~l~~---------------~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~--tg~~l~tl~---- 225 (464)
..+.|. .+|-.|+.+|.+. |.|..|.|+|.|+|+.+|.-. +|--+-++.
T Consensus 234 ~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~-p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~ 312 (764)
T KOG1063|consen 234 REDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH-PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV 312 (764)
T ss_pred cccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc-cchhhheecccCcceEEEecCCccceEEEEEEeecc
Confidence 001111 0244677799997 899889999999999999754 444433332
Q ss_pred ---CCCEeEEEEeCCC--------ceeEEEEEcC-CCcEEEE--EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 226 ---DKHVQEIKIRSSS--------HVPLKILSIE-DGTVLKV--FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 226 ---~~~V~~Vafs~s~--------d~tIklWdi~-tG~~l~t--l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
...-++.-|+|++ .+-.++|-.+ .+.+.+. ..+|...|+.|++.| .|++||+.|.|.|-||+-..
T Consensus 313 gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 313 GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred cccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccc
Confidence 2457888888854 4678999833 3444433 347778899999988 68999999999999883322
Q ss_pred --------------------------------------------------------------------------------
Q 012410 292 -------------------------------------------------------------------------------- 291 (464)
Q Consensus 292 -------------------------------------------------------------------------------- 291 (464)
T Consensus 392 g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn 471 (764)
T KOG1063|consen 392 GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN 471 (764)
T ss_pred ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence
Q ss_pred ---------CCc----EEE-----------------------------EcccCCCceEEEEEcCCCcEEEEEe-CC----
Q 012410 292 ---------NAE----LME-----------------------------VSRTEFMTPSAFIFLYENQLFLTFR-NR---- 324 (464)
Q Consensus 292 ---------tg~----~l~-----------------------------~l~gh~~~v~sv~FspdgqllaS~s-D~---- 324 (464)
+|. |.+ -|-||.-.|++++.||+|+++||++ -.
T Consensus 472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh 551 (764)
T KOG1063|consen 472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEH 551 (764)
T ss_pred CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccc
Confidence 110 011 1234666789999999999999987 33
Q ss_pred -eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE----EEEEc
Q 012410 325 -TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC----LAKIN 398 (464)
Q Consensus 325 -TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c----l~tl~ 398 (464)
-|+||+. +=..++.|++|+.- |.-++|||||++|+|.|. |.|+.||+.+.+.- .+.++
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLT-----VT~l~FSpdg~~LLsvsR-----------DRt~sl~~~~~~~~~e~~fa~~k 615 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLT-----VTRLAFSPDGRYLLSVSR-----------DRTVSLYEVQEDIKDEFRFACLK 615 (764)
T ss_pred eEEEEEeccchhhhheecccceE-----EEEEEECCCCcEEEEeec-----------CceEEeeeeecccchhhhhcccc
Confidence 6899998 45566789999987 899999999999999998 99999998754321 33466
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|+. -||+..|+||++.+||+|+|++|++|.
T Consensus 616 ~HtR----------------------------------IIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 616 AHTR----------------------------------IIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccce----------------------------------EEEEcccCcccceeEEecCCceEEEEe
Confidence 7764 899999999999999999999999995
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=1.4e-22 Score=210.82 Aligned_cols=219 Identities=16% Similarity=0.213 Sum_probs=167.4
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE----EEEec---CCCEeEEEEeCCC--------ceeEEEEEcCCCcEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSIS---DKHVQEIKIRSSS--------HVPLKILSIEDGTVL 253 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~----l~tl~---~~~V~~Vafs~s~--------d~tIklWdi~tG~~l 253 (464)
.+++|+ |.|-.++|||.|.+||+||++.-.. .+.|. .+.|.+++||+.. ...+||+|-. |..+
T Consensus 171 sal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~ 248 (641)
T KOG0772|consen 171 SALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEI 248 (641)
T ss_pred EEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC-Ccee
Confidence 379996 9999999999999999999875332 12333 5789999999854 4567899875 6555
Q ss_pred EEE-------------eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEccc-----CCCceEEEEEcCC
Q 012410 254 KVF-------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRT-----EFMTPSAFIFLYE 314 (464)
Q Consensus 254 ~tl-------------~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~g-----h~~~v~sv~Fspd 314 (464)
..+ ++|...+.+..|.|...+.+|++++|+|+||||+.+-+ -++++.+ --..|.+++|+||
T Consensus 249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd 328 (641)
T KOG0772|consen 249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD 328 (641)
T ss_pred eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence 444 24556678999999777899999999999999998754 3444432 2346889999999
Q ss_pred CcEEEEEe-CCeEEEEeCCCceE----EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 315 NQLFLTFR-NRTVAVWNFRGELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~~Ge~l----~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|++||+|+ ||.|.+|+..+.-+ ..=..|.... .|.+|.||+||++|+|-+. |+|+||||+.
T Consensus 329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~---~Itsi~FS~dg~~LlSRg~-----------D~tLKvWDLr 394 (641)
T KOG0772|consen 329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ---DITSISFSYDGNYLLSRGF-----------DDTLKVWDLR 394 (641)
T ss_pred cchhhhcccCCceeeeecCCcccccceEeeeccCCCC---ceeEEEeccccchhhhccC-----------CCceeeeecc
Confidence 99999999 99999999733322 2334566532 2889999999999999876 9999999996
Q ss_pred C-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 390 T-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 390 t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
+ .+||.+..|--+ + -.-+.+.||||.+.|++|..
T Consensus 395 q~kkpL~~~tgL~t-~-------------------------------~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPT-P-------------------------------FPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccccchhhhcCCCc-c-------------------------------CCCCccccCCCceEEEeccc
Confidence 6 578877655432 0 03456899999999999964
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2e-21 Score=211.01 Aligned_cols=237 Identities=14% Similarity=0.153 Sum_probs=183.5
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc--------CC---------------C------
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--------GK---------------P------ 173 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~--------G~---------------~------ 173 (464)
.++..|.+-||++-||+||++||+ ++.| +.|+||-|.. |. +
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAs----aGeD------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~ 330 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLAS----AGED------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE 330 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeee----cCCC------ceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc
Confidence 344479999999999999999999 6677 8999998855 00 0
Q ss_pred --------------CCc------ccceee----ccccCce---EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-
Q 012410 174 --------------DSG------FALFES----ESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS- 225 (464)
Q Consensus 174 --------------~~~------~~l~~~----~~~~~~~---~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~- 225 (464)
... ...|.. +..+|.+ .+++| -|+ +|.|+|-|+|||||++..-+||.+|.
T Consensus 331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~-fLLSSSMDKTVRLWh~~~~~CL~~F~H 408 (712)
T KOG0283|consen 331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNN-FLLSSSMDKTVRLWHPGRKECLKVFSH 408 (712)
T ss_pred cccccccccccccCCccccCCCccccccccchhhhhccchhheecccc-cCC-eeEeccccccEEeecCCCcceeeEEec
Confidence 000 001110 1245555 68997 455 88999999999999999999999998
Q ss_pred CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE
Q 012410 226 DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 296 (464)
Q Consensus 226 ~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l 296 (464)
.+-|.+|+|.| +-|+.|+||+|.+-++..-.. ...-|.+|+|.|+ |+..++|+.+|..++|+...-++.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEE
Confidence 57899999988 477899999999776665333 2255699999995 777788999999999997776655
Q ss_pred EEcc--c-------CCCceEEEEEcCCCc--EEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 012410 297 EVSR--T-------EFMTPSAFIFLYENQ--LFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLII 364 (464)
Q Consensus 297 ~~l~--g-------h~~~v~sv~Fspdgq--llaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~La 364 (464)
.... - |. .|+.+-|.|... +|+|+.|..|||.|. +-+++.-|+|+.+-.. =.+..|++||++|+
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S---Q~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS---QISASFSSDGKHIV 562 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc---ceeeeEccCCCEEE
Confidence 4321 1 22 799999986544 777777999999999 6889999999887522 24688999999999
Q ss_pred EEecCCCccccccCCCCeEEEEeC
Q 012410 365 SYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~DgtIklWdi 388 (464)
|+|+ |.-|.||+.
T Consensus 563 s~se-----------Ds~VYiW~~ 575 (712)
T KOG0283|consen 563 SASE-----------DSWVYIWKN 575 (712)
T ss_pred Eeec-----------CceEEEEeC
Confidence 9997 999999997
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.2e-22 Score=191.47 Aligned_cols=222 Identities=14% Similarity=0.222 Sum_probs=174.9
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCC-C--eEEEEec--CCCEeEEEE----------eCCCceeEEEEEcCCCcEEEE
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN-Y--TMLYSIS--DKHVQEIKI----------RSSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~t-g--~~l~tl~--~~~V~~Vaf----------s~s~d~tIklWdi~tG~~l~t 255 (464)
+..+ .-|+.||++|.|++|||+.+.+ + +++.+|. .++||.|++ |.+.|+.|-||.-++|+--+.
T Consensus 17 a~lD-yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~ 95 (299)
T KOG1332|consen 17 AQLD-YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA 95 (299)
T ss_pred hhhh-hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence 3443 6799999999999999999985 3 4566776 578999999 347999999999999965555
Q ss_pred Ee--eCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCC-c--EEEEcccCCCceEEEEEcCC---C-----------
Q 012410 256 FY--HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-E--LMEVSRTEFMTPSAFIFLYE---N----------- 315 (464)
Q Consensus 256 l~--~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg-~--~l~~l~gh~~~v~sv~Fspd---g----------- 315 (464)
.+ .|...|.+|+|-|..-+.+|+ ++.||+|.|.+..+. . --+....|...|.+|.+.|- |
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 44 345678999999976566666 789999999987764 2 23456789999999999987 6
Q ss_pred cEEEEEe-CCeEEEEeCC-Cc--eEEEeccCCCCcCCCCeeEEEECCC----CCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 316 QLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 316 qllaS~s-D~TIklWd~~-Ge--~l~tl~gH~~~~~~~~v~svafSpD----g~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+.|+|++ |.+||||+++ |+ +-.+|++|..| |+.||+.|. ..+|||+|. ||+|-||-
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-----VRDVAwaP~~gl~~s~iAS~Sq-----------Dg~viIwt 239 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-----VRDVAWAPSVGLPKSTIASCSQ-----------DGTVIIWT 239 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchh-----hhhhhhccccCCCceeeEEecC-----------CCcEEEEE
Confidence 6699999 9999999995 53 45689999999 788999996 468999987 99999996
Q ss_pred CCC--CeEEEEE-ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 388 ILT--GKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 388 i~t--G~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
... ++--.|+ +... ..||.+.||+-|+.||-+..|..|.||.
T Consensus 240 ~~~e~e~wk~tll~~f~----------------------------------~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFP----------------------------------DVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ecCccCcccccccccCC----------------------------------cceEEEEEeccccEEEEecCCcEEEEEE
Confidence 431 1111111 1111 1799999999999999999999999994
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=8.6e-21 Score=194.55 Aligned_cols=267 Identities=10% Similarity=0.092 Sum_probs=218.7
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
-+.+++..|-...+.+ ++.| .++-+.|...++...++++++... ..|.|+ |+-..++++|.|.+|
T Consensus 221 gi~ald~~~s~~~ilT----GG~d------~~av~~d~~s~q~l~~~~Gh~kki----~~v~~~-~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 221 GITALDIIPSSSKILT----GGED------KTAVLFDKPSNQILATLKGHTKKI----TSVKFH-KDLDTVITASADEII 285 (506)
T ss_pred CeeEEeecCCCCccee----cCCC------CceEEEecchhhhhhhccCcceEE----EEEEec-cchhheeecCCcceE
Confidence 3777777776344555 5666 799999999999998888887543 389997 899999999999999
Q ss_pred EEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCC--cceeeEEEEccCCCeEEE
Q 012410 211 KVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLL--HRNKKVDFIEQFNEKLLV 278 (464)
Q Consensus 211 KlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~--~~~~~V~F~~~~~~~lla 278 (464)
+||.+.+.++...+. ++.|..+...| +.|++.-.-|+++|.++....+.. -...+.+|+|+ +.|+.
T Consensus 286 ~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD--gLifg 363 (506)
T KOG0289|consen 286 RVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD--GLIFG 363 (506)
T ss_pred EeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC--ceEEe
Confidence 999988777654433 67788888765 688999999999999998776532 23589999995 56665
Q ss_pred -EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEE
Q 012410 279 -KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY 355 (464)
Q Consensus 279 -~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~sva 355 (464)
|..|+.|||||+.++.-+.-+.||+..|.++.|+.+|-+||++. |+.|++||++ -+..+|+.-.... .|+++.
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~----~v~s~~ 439 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK----EVNSLS 439 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc----cceeEE
Confidence 67999999999999999999999999999999999999999999 8889999995 7777777755543 189999
Q ss_pred ECCCCCEEEEEecCCCccccccCCCCeEEEEeCC--CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 356 ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 356 fSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
|-+.|++|+.|+. |=+|.+.+-. +-+|+..+.-|++
T Consensus 440 fD~SGt~L~~~g~-----------~l~Vy~~~k~~k~W~~~~~~~~~sg------------------------------- 477 (506)
T KOG0289|consen 440 FDQSGTYLGIAGS-----------DLQVYICKKKTKSWTEIKELADHSG------------------------------- 477 (506)
T ss_pred EcCCCCeEEeecc-----------eeEEEEEecccccceeeehhhhccc-------------------------------
Confidence 9999999999864 5555555422 5678888888875
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.|.|..+-+.|+++|.|...+|..
T Consensus 478 ---~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 478 ---LSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ---ccceeeecccceEEeeccchhheEEee
Confidence 678899999999999999999998863
No 102
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=9.7e-21 Score=185.04 Aligned_cols=215 Identities=18% Similarity=0.184 Sum_probs=183.9
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe--------CCCceeEEEEEcCCCcEEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR--------SSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~t 255 (464)
+....|.|+ -+|.+|-|++-|.++-||--.+|+-|-+.. .+.||++.+. .+.|+++||||+++|+++.+
T Consensus 11 RplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~ 89 (327)
T KOG0643|consen 11 RPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLAT 89 (327)
T ss_pred cccceEEec-CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEE
Confidence 334489997 899999999999999999998999996655 6789999994 36899999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEe-----CCCeEEEEECC-------CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQ-----ENENLQILDVR-------NAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s-----~D~tIkIWDv~-------tg~~l~~l~gh~~~v~sv~FspdgqllaS~s- 322 (464)
+... ..|+.|.|++. +..+++.. .-+.|-+.|++ +.+++..+..+...+.+..|.|-++.|++|-
T Consensus 90 ~k~~-~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe 167 (327)
T KOG0643|consen 90 WKTN-SPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE 167 (327)
T ss_pred eecC-CeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC
Confidence 9854 68899999984 44444443 34788999999 5666777777778888888999999999999
Q ss_pred CCeEEEEeC-CC-ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 323 NRTVAVWNF-RG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 323 D~TIklWd~-~G-e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
||.|.+||+ +| +++.+-+.|... |+++.||||..+++++|+ |.|-||||..|=+|++|+..-
T Consensus 168 ~G~is~~da~~g~~~v~s~~~h~~~-----Ind~q~s~d~T~FiT~s~-----------Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 168 DGSISIYDARTGKELVDSDEEHSSK-----INDLQFSRDRTYFITGSK-----------DTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred CCcEEEEEcccCceeeechhhhccc-----cccccccCCcceEEeccc-----------CccceeeeccceeeEEEeeec
Confidence 999999999 67 577788999987 889999999999999998 999999999999999999665
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
. +|.+.|++|--..++.|+
T Consensus 232 ~-----------------------------------PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 232 R-----------------------------------PVNTAAISPLLDHVILGG 250 (327)
T ss_pred c-----------------------------------cccceecccccceEEecC
Confidence 4 899999999777776665
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=4.2e-21 Score=196.83 Aligned_cols=227 Identities=15% Similarity=0.191 Sum_probs=192.4
Q ss_pred cCceEEEEeCCCC--cEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC--------CCceeEEEEEcCCCcEE
Q 012410 186 KWPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS--------SSHVPLKILSIEDGTVL 253 (464)
Q Consensus 186 ~~~~~VaFs~pdG--k~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~--------s~d~tIklWdi~tG~~l 253 (464)
.-|+..+|+ +.+ ..+.+|+.|+++-++|-...+.|.++.+ ..|.+|.|+| +.|..|+||+..+..+.
T Consensus 218 ~~pgi~ald-~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 218 STPGITALD-IIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCCeeEEe-ecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 345567775 555 5778899999999999999999988874 5688999976 57889999999988877
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC--CCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh--~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
....-|...|..+.-.| .++++|+++.|+++-.-|+++|.++.+-... .-.+.+.+|.|||-+|++|. |+.|||||
T Consensus 297 ~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 77765557777777767 6899999999999999999999998765543 24578999999999999999 99999999
Q ss_pred C-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccc
Q 012410 331 F-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 409 (464)
Q Consensus 331 ~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~ 409 (464)
+ ++.-+..|.||+.. |.+|+|+.+|-+||.+++ |++|+|||+..-+-.++|.-...
T Consensus 376 lks~~~~a~Fpght~~-----vk~i~FsENGY~Lat~ad-----------d~~V~lwDLRKl~n~kt~~l~~~------- 432 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGP-----VKAISFSENGYWLATAAD-----------DGSVKLWDLRKLKNFKTIQLDEK------- 432 (506)
T ss_pred cCCccccccCCCCCCc-----eeEEEeccCceEEEEEec-----------CCeEEEEEehhhcccceeecccc-------
Confidence 9 68899999999998 899999999999999997 99999999977777777654432
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 410 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..|.++.|++-|+.|+.++.|=+|++.+
T Consensus 433 --------------------------~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 433 --------------------------KEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred --------------------------ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 1688999999999999999988887654
No 104
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.2e-23 Score=220.40 Aligned_cols=212 Identities=12% Similarity=0.236 Sum_probs=177.5
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEE------EEe--CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEI------KIR--SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~V------afs--~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
.+-.++....+...|+||.+.-.+. ...|..+ .+. ...|..+-||.+..=-++..|.+|...+.+|.|
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~~~~h----saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTREFVAH----SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred cccccceeeeeeccccccchhhhhh----hhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 3445555566667888986543221 1122222 222 246777889999666677788888789999999
Q ss_pred EccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCC
Q 012410 269 IEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 345 (464)
Q Consensus 269 ~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~ 345 (464)
.+. +.|++ |+.|||||+||+..++.+++|.||...+.+|.|+|-|.++|+++ |.-+++||.+ --|.+++.+|..-
T Consensus 79 ~~~--E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 79 DTS--ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred Ccc--hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 884 55555 77999999999999999999999999999999999999999999 9999999995 7799999998765
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
|+.+.|+|||+++++|.+ |++|||||...|+.+.+|++|+.
T Consensus 157 -----v~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~~~ef~~~e~----------------------- 197 (825)
T KOG0267|consen 157 -----VDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKLSKEFKSHEG----------------------- 197 (825)
T ss_pred -----eEEEeecCCCceeeccCC-----------cceeeeecccccccccccccccc-----------------------
Confidence 889999999999999976 99999999999999999999997
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+|.|+|---.|++||.|++|++||+
T Consensus 198 -----------~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 198 -----------KVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred -----------cccccccCchhhhhccCCCCceeeeecc
Confidence 8889999999999999999999999995
No 105
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.5e-20 Score=196.92 Aligned_cols=270 Identities=18% Similarity=0.183 Sum_probs=212.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC-cccceeeccccCceEEEEeCCCCcE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS-GFALFESESLKWPGFVEFDDVNGKV 200 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~-~~~l~~~~~~~~~~~VaFs~pdGk~ 200 (464)
.+++.-+.+ |.|+|||.....||+ +-.+ ..|.||++..+=+.. .+.+.+ -+++.+++|+ +|..
T Consensus 19 rf~d~~Ps~-I~slA~s~kS~~lAv----sRt~------g~IEiwN~~~~w~~~~vi~g~~---drsIE~L~W~--e~~R 82 (691)
T KOG2048|consen 19 RFVDYKPSE-IVSLAYSHKSNQLAV----SRTD------GNIEIWNLSNNWFLEPVIHGPE---DRSIESLAWA--EGGR 82 (691)
T ss_pred EEEeeeccc-eEEEEEeccCCceee----eccC------CcEEEEccCCCceeeEEEecCC---CCceeeEEEc--cCCe
Confidence 355454544 999999999999988 3444 589999987765532 122322 2566689997 4557
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEE--EeeCCcceeeEEE
Q 012410 201 LTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKV--FYHLLHRNKKVDF 268 (464)
Q Consensus 201 LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~t--l~~~~~~~~~V~F 268 (464)
|-|.+.+++|--||+.+++.++.+. ++.||+++++|. +|+-+.+.++..|++... |.-...|+.+|+|
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 8899999999999999999999887 678999999983 677889999998887754 3333478999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEE-----E--c-ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELME-----V--S-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~-----~--l-~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.+. +-+|++|+.|+-|++||+.+++.++ + + ++..--||+|.|..|+. ||||. -|+|+.||. .|.++++
T Consensus 163 ~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 163 NPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred cCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhh
Confidence 994 5568889999999999999999877 2 1 22445699999998886 56666 999999999 7999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EE--EEccCCCCCCcccccCCCC
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LA--KINATNCSPKVDDELGSSS 414 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~--tl~gh~~~~~~~~~~~~~~ 414 (464)
+.-|..- |.+++.++++++++|++. |++|-.....+++- +. ...+|..
T Consensus 241 ~~~h~ad-----Vl~Lav~~~~d~vfsaGv-----------d~~ii~~~~~~~~~~wv~~~~r~~h~h------------ 292 (691)
T KOG2048|consen 241 HSCHDAD-----VLALAVADNEDRVFSAGV-----------DPKIIQYSLTTNKSEWVINSRRDLHAH------------ 292 (691)
T ss_pred hhhhhcc-----eeEEEEcCCCCeEEEccC-----------CCceEEEEecCCccceeeeccccCCcc------------
Confidence 9999876 899999999999999987 88887777655533 11 1123432
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
+|.+++..++ .|+||+.|.++.+
T Consensus 293 ----------------------dvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 293 ----------------------DVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred ----------------------cceeeeeecc--eEEecceeeEEEE
Confidence 8999999988 8999999999865
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=187.12 Aligned_cols=292 Identities=13% Similarity=0.141 Sum_probs=204.7
Q ss_pred eEEeeecccccEeeEee----cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecc
Q 012410 109 VCAAFSRETNRRICFLN----VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln----~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~ 184 (464)
-.+.|+..+.+..+-|| .+|..-|.+|+|+.||++||+++ +| |+|+||+++.=....-.-+-..--
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~----~D------r~Ir~w~~~DF~~~eHr~~R~nve 131 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATIS----GD------RSIRLWDVRDFENKEHRCIRQNVE 131 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEe----CC------ceEEEEecchhhhhhhhHhhcccc
Confidence 46777767777655544 56888899999999999999944 66 899999985411100000000112
Q ss_pred ccCceEEEEeCCCCcE-EEEecCCCcEEEEeCC---CCeEEEE-ec-C-------C--CEeEEEE--------eCCCcee
Q 012410 185 LKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLK---NYTMLYS-IS-D-------K--HVQEIKI--------RSSSHVP 241 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~-LaSgs~D~tiKlWdl~---tg~~l~t-l~-~-------~--~V~~Vaf--------s~s~d~t 241 (464)
..||..|+|+ ||-+- +++.....++.++-+. .|..-++ .+ + + .|.++-+ |.+.|.+
T Consensus 132 ~dhpT~V~Fa-pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 132 YDHPTRVVFA-PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred CCCceEEEEC-CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence 5799999997 78764 4455566678887653 2332211 11 1 1 2333333 5689999
Q ss_pred EEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC---CcE-----EEEcccCCCceEEEEEcC
Q 012410 242 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---AEL-----MEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t---g~~-----l~~l~gh~~~v~sv~Fsp 313 (464)
|-||++. |+.|.++....-.+.-.+.+| +|..+++++.---+++|.+-= |+- .-.|.||+..|.+++|||
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred EEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 9999998 999999885545566777778 455666678888999998643 332 226899999999999999
Q ss_pred CCcEEEEEe-CCeEEEEeCC-----Cc---eEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 314 ENQLFLTFR-NRTVAVWNFR-----GE---LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~~-----Ge---~l~tl~--gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+...++|.| ||++||||.+ |+ +|+++. -|..--. .+ -++.||.|+.||-.. -.+
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~--p~-RL~lsP~g~~lA~s~------------gs~ 353 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE--PV-RLELSPSGDSLAVSF------------GSD 353 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC--ce-EEEeCCCCcEEEeec------------CCc
Confidence 999999999 9999999953 33 344432 1111100 02 589999999999765 467
Q ss_pred EEEEeCCCCeEEEEEc-cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 383 INVSSILTGKCLAKIN-ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 383 IklWdi~tG~cl~tl~-gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
+++...++|+-.-+++ .|.. .|.+++|+|||+.|||.+ |.-|||
T Consensus 354 l~~~~se~g~~~~~~e~~h~~----------------------------------~Is~is~~~~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 354 LKVFASEDGKDYPELEDIHST----------------------------------TISSISYSSDGKYIATCG-DRYVRV 398 (420)
T ss_pred eEEEEcccCccchhHHHhhcC----------------------------------ceeeEEecCCCcEEeeec-ceeeee
Confidence 9999999998766663 4654 899999999999999987 455665
Q ss_pred cc
Q 012410 462 WS 463 (464)
Q Consensus 462 Wd 463 (464)
-.
T Consensus 399 ~~ 400 (420)
T KOG2096|consen 399 IR 400 (420)
T ss_pred ec
Confidence 43
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.2e-20 Score=194.40 Aligned_cols=255 Identities=15% Similarity=0.180 Sum_probs=203.7
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeE-ee----------------cCCCceEEEEEEeeCCCEEEEEEe
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF-LN----------------VSPDEVIRSLFYNKNNDSLITVSV 149 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~-ln----------------~~~~~~i~Sv~fs~~g~~l~svSa 149 (464)
-++....+. +..++.++.+|++.=|++.+|+-... +. ..|...|-+++.|+||++|++
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat--- 219 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT--- 219 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe---
Confidence 345555555 66999999999999999999995521 11 156778999999999999999
Q ss_pred ecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CC
Q 012410 150 YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DK 227 (464)
Q Consensus 150 ~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~ 227 (464)
+.-| +.+-||+..+++..+.+++|... +-+++|- -.-.-|.|+|.|.+||+|++..-..+.|+. ..
T Consensus 220 -gg~d------~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 220 -GGRD------RHVQIWDCDTLEHVKVFKGHRGA----VSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred -cCCC------ceEEEecCcccchhhcccccccc----eeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 7777 89999999999998877766643 3389995 455679999999999999998776666665 45
Q ss_pred CEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc
Q 012410 228 HVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 299 (464)
Q Consensus 228 ~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l 299 (464)
.|.+|.... ..|.|++||.|. -+...+|.++...+-+|+|+.. +.+++||.||+|-||++...+.+-+.
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEe
Confidence 677776632 489999999996 4566677776678899999975 89999999999999999999877643
Q ss_pred c-cC-----------CCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC----ceEEEeccCCCCcCCCCeeEEEECCCCC
Q 012410 300 R-TE-----------FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG----ELVTSFEDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 300 ~-gh-----------~~~v~sv~FspdgqllaS~s-D~TIklWd~-~G----e~l~tl~gH~~~~~~~~v~svafSpDg~ 361 (464)
+ .| ..|+++++-.|...++|||| ||.||||-+ +| +++..+. -..+ ||+|+|+++|+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-----VNsl~f~~sgk 438 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-----VNSLAFSNSGK 438 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-----EEEEEEccCCC
Confidence 2 22 22899999999999999999 999999998 57 4566655 3334 89999999999
Q ss_pred EEEEEe
Q 012410 362 LIISYC 367 (464)
Q Consensus 362 ~LaSgs 367 (464)
.|+.|.
T Consensus 439 ~ivagi 444 (479)
T KOG0299|consen 439 RIVAGI 444 (479)
T ss_pred EEEEec
Confidence 777664
No 108
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.8e-21 Score=196.13 Aligned_cols=252 Identities=14% Similarity=0.189 Sum_probs=194.3
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
..+|+++.||.+++||+.+-.++.++ ..|..+|+.+.+.. ....+ .++| +|++.|-+.- .+..++.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~t----vgdD------KtvK~wk~~~-~p~~til 145 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFT----VGDD------KTVKQWKIDG-PPLHTIL 145 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEE----ecCC------cceeeeeccC-Ccceeee
Confidence 56899999999999999999999999 66999999999998 44555 4567 8999998643 3322111
Q ss_pred ceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEc
Q 012410 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSI 247 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi 247 (464)
.-. ..+ .+.-. --+...|+++++ |-|||.+--..+.+++ ...|.+|+|+| .+|..|-|+|.
T Consensus 146 g~s-~~~----gIdh~-~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 146 GKS-VYL----GIDHH-RKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred ccc-ccc----ccccc-cccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 100 111 11111 123467777765 9999998777777776 57899999987 38999999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
.+++.|+...-. -+..+|+|+| ..-.+.++++|.++..+|++.- +.+++..+|...|.+|.|||-|+-|+||| |+|
T Consensus 218 R~~~Pl~KVi~~-mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 218 RQASPLKKVILT-MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred ccCCccceeeee-ccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce
Confidence 999999876632 4668999999 4455666889999999999984 47889999999999999999999999999 999
Q ss_pred EEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 326 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 326 IklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|||+.++ |.---+..-.... .|.+|.||-|.++|+|||+ |+.||||-..
T Consensus 296 IRIf~~~~~~SRdiYhtkRMq----~V~~Vk~S~Dskyi~SGSd-----------d~nvRlWka~ 345 (433)
T KOG0268|consen 296 IRIFPVNHGHSRDIYHTKRMQ----HVFCVKYSMDSKYIISGSD-----------DGNVRLWKAK 345 (433)
T ss_pred EEEeecCCCcchhhhhHhhhh----eeeEEEEeccccEEEecCC-----------Ccceeeeecc
Confidence 9999984 5432222111112 2889999999999999997 9999999753
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=1.6e-20 Score=185.56 Aligned_cols=262 Identities=16% Similarity=0.129 Sum_probs=192.7
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-------EEEec----C------CCEeEEEE---------eCCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSIS----D------KHVQEIKI---------RSSS 238 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-------l~tl~----~------~~V~~Vaf---------s~s~ 238 (464)
-+.++++..++..|+++.||+.|+.|-||||++-.- .+... + ..|.++-+ +.+-
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 355557778778999999999999999999997541 11111 1 12444444 3368
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC-CeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~-~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
|+|+|+||..|-+...+|+-. ..|.+-+.+|-.- ..|++ |-.|-.|||=|+++|-|-++|.||.+.|.+|.|||-..
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred cceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce
Confidence 999999999999999888843 5666666666532 33444 55999999999999999999999999999999999988
Q ss_pred E-EEEEe-CCeEEEEeC-C-CceEEEeccCCCCcC---------CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 317 L-FLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHP---------DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 317 l-laS~s-D~TIklWd~-~-Ge~l~tl~gH~~~~~---------~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
. ||||+ |++||+||+ + .-|..+|..|....+ ...|+.+||++||.+|++.+. |..+
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt-----------d~r~ 270 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT-----------DDRI 270 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-----------ccce
Confidence 6 56778 999999999 4 479888888873111 124899999999999999876 9999
Q ss_pred EEEeCCCCeEEEEEcc-----CCC--CC---------CcccccCCCCCCcc--ccccccccccccccccccCEEEEEEcC
Q 012410 384 NVSSILTGKCLAKINA-----TNC--SP---------KVDDELGSSSTGKS--KKLNKSSYIRSTVGEALEDITSLFYDE 445 (464)
Q Consensus 384 klWdi~tG~cl~tl~g-----h~~--~~---------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~V~slafsp 445 (464)
++|+..+|+- +++. |+. ++ .+..+-+-+..+|- ...++..++|++. ++.|.+.+|-|
T Consensus 271 r~wn~~~G~n--tl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~ 345 (397)
T KOG4283|consen 271 RVWNMESGRN--TLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRP 345 (397)
T ss_pred EEeecccCcc--cccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc---cceeeEEeecC
Confidence 9999988863 1111 111 01 11122222333333 3344455566655 78999999999
Q ss_pred CCCEEEEeeCCCcEEecc
Q 012410 446 ERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 446 Dg~~LaSgs~DgtVrlWd 463 (464)
|=+++++|+.|+.|.-|.
T Consensus 346 ~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 346 DFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred chhhhhccccCCcccccc
Confidence 999999999999998884
No 110
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=1.7e-20 Score=192.88 Aligned_cols=265 Identities=12% Similarity=0.145 Sum_probs=183.0
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc--------CCCCC--cccceeeccccCceEEEEeC
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--------GKPDS--GFALFESESLKWPGFVEFDD 195 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~--------G~~~~--~~~l~~~~~~~~~~~VaFs~ 195 (464)
..|++-|..+-|-|.+..++.+- +.. ..+.|||... |.+.. .+.+|+.+-. +++++.
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~---t~~------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~----glsWn~ 187 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATK---TSS------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGY----GLSWNR 187 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEec---CCC------CCEEEEEeccCCCcccccccCCCceEEEeeccccc----cccccc
Confidence 45788899999999988776622 333 6889999732 22211 2333433211 477765
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
..--.|+||+.|++|.+||++.+..- +.. -.....+.+|...|..|+|.+.+...
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~-----------------~~~--------~~p~~~~~~h~~~VeDV~~h~~h~~l 242 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKE-----------------DKV--------VDPKTIFSGHEDVVEDVAWHPLHEDL 242 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccC-----------------Ccc--------ccceEEeecCCcceehhhccccchhh
Confidence 44447889999999999998754321 000 01123355566778999999965555
Q ss_pred EEEEeCCCeEEEEECC--CCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCC
Q 012410 276 LLVKQENENLQILDVR--NAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDC 349 (464)
Q Consensus 276 lla~s~D~tIkIWDv~--tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~ 349 (464)
+.+.++|+.+.|||++ +.++.++-.+|...|.+++|+| ++.+|||+| |+||+|||++ -+++++|++|..-
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de---- 318 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE---- 318 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc----
Confidence 5557899999999999 6677788899999999999996 566889999 9999999994 7899999999987
Q ss_pred CeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 350 NTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 350 ~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
|..|-|||+-. .|||++ +|+.+.+||+..=.--++-.--...|-|..|+.-| |
T Consensus 319 -v~~V~WSPh~etvLASSg-----------~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG-H------------- 372 (422)
T KOG0264|consen 319 -VFQVEWSPHNETVLASSG-----------TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG-H------------- 372 (422)
T ss_pred -eEEEEeCCCCCceeEecc-----------cCCcEEEEeccccccccChhhhccCCcceeEEecC-c-------------
Confidence 89999999765 555554 49999999984310000000000011111121111 1
Q ss_pred ccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 429 STVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
...|....|+|... +|+|.++|+.++||++
T Consensus 373 ------~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 373 ------TAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ------ccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 12788899999876 6899999999999974
No 111
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=4.4e-20 Score=204.90 Aligned_cols=238 Identities=11% Similarity=0.051 Sum_probs=183.5
Q ss_pred ceEEEEeCCCCcEEEEec--CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 188 PGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs--~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
+.+|..+ |||..+|+|+ .|+.+++|+.+. .+. ..+.||..=-+.|-+...|...|.+
T Consensus 16 IfSIdv~-pdg~~~aTgGq~~d~~~~iW~~~~--vl~------------------~~~~~~~~l~k~l~~m~~h~~sv~C 74 (942)
T KOG0973|consen 16 IFSIDVH-PDGVKFATGGQVLDGGIVIWSQDP--VLD------------------EKEEKNENLPKHLCTMDDHDGSVNC 74 (942)
T ss_pred EEEEEec-CCceeEecCCccccccceeecccc--ccc------------------hhhhhhcccchhheeeccccCceeE
Confidence 3478886 9999999999 899999998642 000 1112222112344555556688999
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCC-------C-----------cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRN-------A-----------ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~t-------g-----------~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
|.|++ ++.++++||+|+-|.||+-.. | ++..+|++|.+.|..+.++||+.+|||++ |++|
T Consensus 75 VR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 75 VRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred EEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence 99999 577888899999999999762 1 26779999999999999999999999999 9999
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC-CC
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC-SP 404 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~-~~ 404 (464)
-|||. +.+++++|+||+.. |-.|.|-|-|++|||=++ |+|||+|++.+-.|.+.+.++-. .|
T Consensus 154 iiwn~~tF~~~~vl~~H~s~-----VKGvs~DP~Gky~ASqsd-----------Drtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSL-----VKGVSWDPIGKYFASQSD-----------DRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred EEEccccceeeeeeeccccc-----ccceEECCccCeeeeecC-----------CceEEEEEcccceeeEeeccchhhCC
Confidence 99998 69999999999998 788999999999999887 99999999888889999988765 33
Q ss_pred Ccc-----cccCCCCCCccc----ccccccc-----ccc---cccccccCEEEEEEcCC-------------CC----EE
Q 012410 405 KVD-----DELGSSSTGKSK----KLNKSSY-----IRS---TVGEALEDITSLFYDEE-------------RN----EI 450 (464)
Q Consensus 405 ~~~-----~~~~~~~~~~~~----~~~~~~~-----~~~---~~~~~l~~V~slafspD-------------g~----~L 450 (464)
.+. .=||+|.|+|+. +-..+.. .|. ..--+-..|..|.|+|- .+ ++
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 333 557788888772 2222222 233 11123348999999971 12 79
Q ss_pred EEeeCCCcEEecc
Q 012410 451 YTGNRHGLVHVWS 463 (464)
Q Consensus 451 aSgs~DgtVrlWd 463 (464)
|+||.|++|-||.
T Consensus 298 AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 298 AVGSQDRSLSVWN 310 (942)
T ss_pred EEecCCccEEEEe
Confidence 9999999999995
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=9.4e-20 Score=181.26 Aligned_cols=216 Identities=11% Similarity=0.162 Sum_probs=175.5
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC----------CCceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS----------SSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~----------s~d~tIklWdi~tG~~l~tl~ 257 (464)
+||. +|.++||||.|.||+|+|+..-..+-++. .+.|..+.|.+ +.|+.|-+|+...-+++++|+
T Consensus 48 avAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK 124 (362)
T KOG0294|consen 48 ALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK 124 (362)
T ss_pred EEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec
Confidence 6776 58999999999999999999887776654 67899999954 589999999999999999999
Q ss_pred eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCc
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGE 334 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge 334 (464)
.|.+.|..|+..|- ++|+.+ +.|+.+++||+-+|+--.+++ .|. ...|.|+|.|..|+-+.-+.|-+|.+ +..
T Consensus 125 ~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~ 200 (362)
T KOG0294|consen 125 AHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRNKIDIYQLDNAS 200 (362)
T ss_pred ccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEeccEEEEEecccHh
Confidence 87788999999884 777775 899999999999998544332 232 34488999999998888667999998 466
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
+...++...- +-++-|- ++..|+.|.+ |+.|++||..++.|+..+.+|.+
T Consensus 201 v~~~i~~~~r------~l~~~~l-~~~~L~vG~d-----------~~~i~~~D~ds~~~~~~~~AH~~------------ 250 (362)
T KOG0294|consen 201 VFREIENPKR------ILCATFL-DGSELLVGGD-----------NEWISLKDTDSDTPLTEFLAHEN------------ 250 (362)
T ss_pred Hhhhhhcccc------ceeeeec-CCceEEEecC-----------CceEEEeccCCCccceeeecchh------------
Confidence 6655554421 2233333 5677777765 89999999999999999999997
Q ss_pred CCccccccccccccccccccccCEEEEE--EcCCCCEEEEeeCCCcEEeccC
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLF--YDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~sla--fspDg~~LaSgs~DgtVrlWd~ 464 (464)
+|-+++ -.|++.+|+|+|.||.|++||.
T Consensus 251 ----------------------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 251 ----------------------RVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred ----------------------heeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 777776 3789999999999999999984
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7e-19 Score=169.09 Aligned_cols=230 Identities=12% Similarity=0.162 Sum_probs=187.4
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCC------CCeE----------EEEec-CCCEeEEEEeC--------CCceeE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYTM----------LYSIS-DKHVQEIKIRS--------SSHVPL 242 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~------tg~~----------l~tl~-~~~V~~Vafs~--------s~d~tI 242 (464)
+.+|+|. |+|++-|-||..+|.||--.. .+.. .++-+ .+.|+.+++|| +.|++|
T Consensus 35 irav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 35 IRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred eeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 3489996 999999999999999987432 1110 01111 35699999998 589999
Q ss_pred EEEEcCCCcEEE-----EEeeCCcceeeEEEEccC--CCeEEEE-e-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 243 KILSIEDGTVLK-----VFYHLLHRNKKVDFIEQF--NEKLLVK-Q-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 243 klWdi~tG~~l~-----tl~~~~~~~~~V~F~~~~--~~~lla~-s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
|+.-....+|.. .|+-|...++.++|.++. ++.||++ + .|..|.|=|..+|+-++.+.||+..+-++ ++-
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-ysw 192 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSW 192 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEe
Confidence 998776655553 355455789999998753 5677773 3 89999999999999999999999999887 899
Q ss_pred CCcEEEEEe-CCeEEEEeCC-CceEEEecc--CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 314 ENQLFLTFR-NRTVAVWNFR-GELVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~~-Ge~l~tl~g--H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+|-+||||| |.|||.||++ ..|+.++.. |........|.+|+.-|.|++||||-. |.+--|+||.
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-----------dssc~lydir 261 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-----------DSSCMLYDIR 261 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-----------CCceEEEEee
Confidence 999999999 9999999996 889988763 222111123889999999999999975 8889999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
-|+-++.+..|+. .|.+|-|||-..+|.++|-|..|||=|+
T Consensus 262 g~r~iq~f~phsa----------------------------------dir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 262 GGRMIQRFHPHSA----------------------------------DIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred CCceeeeeCCCcc----------------------------------ceeEEEeCCCceEEEEecccceEEEeec
Confidence 9999999999997 9999999999999999999999998653
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=3.3e-19 Score=176.63 Aligned_cols=269 Identities=13% Similarity=0.057 Sum_probs=208.6
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
...+...+++-|-+|+|||.-+.++.+| |-| .+||+|++.. |++.. ....+ +-+.+-.|+|+ .||.
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~---SWD------~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~Ws-ddgs 85 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAG---SWD------GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWS-DDGS 85 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEec---ccC------CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEc-cCCc
Confidence 3356677888999999999777777655 445 6999999966 67654 22222 33556689998 6999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEE-EecCCCEeEEEEe----------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLY-SISDKHVQEIKIR----------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~-tl~~~~V~~Vafs----------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
.+.+|+-|+++|+|||.+++... -.++..|..+.|= .+-|+|||.||...-+.+.+++-. .+++..+-
T Consensus 86 kVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv 164 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV 164 (347)
T ss_pred eEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc
Confidence 99999999999999999998765 4568889998882 268999999999999999988743 67766664
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEE-Ec-ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCce--EEEeccC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELME-VS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL--VTSFEDH 342 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~l-~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~--l~tl~gH 342 (464)
.- ..++++-.|+.|.+++++++.-.. .. ..-...+++|+.-+|++.+|-|| .|.+.|-.+ .+.. --+|+-|
T Consensus 165 ~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH 241 (347)
T KOG0647|consen 165 LY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH 241 (347)
T ss_pred cC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEe
Confidence 22 456668899999999998876332 11 11123578999889999999999 999999999 4643 3377777
Q ss_pred CC------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCC
Q 012410 343 LL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 343 ~~------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
.. -++ .||+|+|+|.-.+|++++. ||++..||-....-|++.+.|..
T Consensus 242 R~~~~~~~~VY--aVNsi~FhP~hgtlvTaGs-----------DGtf~FWDkdar~kLk~s~~~~q-------------- 294 (347)
T KOG0647|consen 242 RSTNSVNDDVY--AVNSIAFHPVHGTLVTAGS-----------DGTFSFWDKDARTKLKTSETHPQ-------------- 294 (347)
T ss_pred ccCCCCCCceE--EecceEeecccceEEEecC-----------CceEEEecchhhhhhhccCcCCC--------------
Confidence 63 133 3899999999999999875 99999999877777777777765
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEe
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 453 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg 453 (464)
.|++..|+.+|.++|=+
T Consensus 295 --------------------pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 295 --------------------PITCCSFNRNGSIFAYA 311 (347)
T ss_pred --------------------ccceeEecCCCCEEEEE
Confidence 89999999999988744
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=5.2e-19 Score=175.41 Aligned_cols=267 Identities=16% Similarity=0.157 Sum_probs=204.2
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEE
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~La 202 (464)
.|+..+.+.|-+|-|+|.++.|.+.| -| .+++++++..-++.. .+..+ ...-..+|- |-..++
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvss----WD------gslrlYdv~~~~l~~---~~~~~--~plL~c~F~--d~~~~~ 69 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSS----WD------GSLRLYDVPANSLKL---KFKHG--APLLDCAFA--DESTIV 69 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEe----cc------CcEEEEeccchhhhh---heecC--Cceeeeecc--CCceEE
Confidence 45666889999999999888887733 55 699999987665432 23322 222378995 456788
Q ss_pred EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
+|+.|++||+.|+.+++-..... .+.|+.|.+++ +-|++||+||..+-.+.-++... ..|++++ ..+
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~---v~g 145 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMD---VSG 145 (323)
T ss_pred EeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEe---ccC
Confidence 89999999999999998877665 67899998864 68999999999864444444422 3444444 346
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc----eEEEeccCCCC
Q 012410 274 EKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE----LVTSFEDHLLW 345 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge----~l~tl~gH~~~ 345 (464)
+.|++|..|..+.+||+++-..-..-+ .-...+++|++.|++.=+|.+| ||-|.+=.++ -+ ....|+-|-..
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence 889999999999999999865433222 2235789999999999999999 9999887773 43 34477777652
Q ss_pred cCCC----CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 346 HPDC----NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 346 ~~~~----~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
..+. .||+|+|+|=-+++|+|+. ||-|.+||+.+.|-|+.|.....
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~tfaTgGs-----------DG~V~~Wd~~~rKrl~q~~~~~~------------------- 275 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHGTFATGGS-----------DGIVNIWDLFNRKRLKQLAKYET------------------- 275 (323)
T ss_pred cCCceEEEEeceeEeccccceEEecCC-----------CceEEEccCcchhhhhhccCCCC-------------------
Confidence 2211 2899999999999999975 99999999999999999977754
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
.|-+++|+.||..||.|+.
T Consensus 276 ---------------SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 276 ---------------SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ---------------ceEEEEeccCCCeEEEEec
Confidence 7999999999999999974
No 116
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=5e-19 Score=189.63 Aligned_cols=303 Identities=12% Similarity=0.201 Sum_probs=231.3
Q ss_pred cceeehhccCCeEEeeeccc----ccEeeEeecCCCceEEEEEEee------------CCCEEEEEEeecCCCCccccee
Q 012410 98 RDIVFALAHSGVCAAFSRET----NRRICFLNVSPDEVIRSLFYNK------------NNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~----g~~l~~ln~~~~~~i~Sv~fs~------------~g~~l~svSa~~sddfs~L~~~ 161 (464)
.+-|.....|.-+.+||+.+ |+.-..| +|..-||+|--=| -| -+++ ++.| .
T Consensus 336 ~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~T----CSsD------~ 402 (1080)
T KOG1408|consen 336 TDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRG-CFTT----CSSD------G 402 (1080)
T ss_pred CceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCcc-ceeE----ecCC------C
Confidence 67777788888999999776 4444444 7999999997655 22 2455 3334 5
Q ss_pred eEEEEEeccCCCCC---------------------------cccceeec------cccCceEEEEeCCCCcEEEEecCCC
Q 012410 162 STKIEYIRRGKPDS---------------------------GFALFESE------SLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 162 ti~l~~i~~G~~~~---------------------------~~~l~~~~------~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
||+||+++-+--+. +..+|... ...-..+|+.| ||||.||||.--|
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqhLAsGDr~G 481 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQHLASGDRGG 481 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcceecccCccC
Confidence 99999986522111 12222211 01112269997 9999999999999
Q ss_pred cEEEEeCCCCeEEEEe--cCCCEeEEEEe-----------CCCceeEEEEEcCCC-cEEEEEeeCCcceeeEEEEccC-C
Q 012410 209 IYKVFDLKNYTMLYSI--SDKHVQEIKIR-----------SSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQF-N 273 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl--~~~~V~~Vafs-----------~s~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F~~~~-~ 273 (464)
+++|+||.+-+.+.++ ++..|.++.|| ++.|.-|.++|+.-. -+++||.+|...+.+|.|...+ +
T Consensus 482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 9999999976655444 36789999995 368899999999633 3557888887889999998854 3
Q ss_pred CeEEEEeCCCeEEEEECCC----CcEEEEcccC----CCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 274 EKLLVKQENENLQILDVRN----AELMEVSRTE----FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~t----g~~l~~l~gh----~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
-++++.+.|+.|.. ++.. |.. ..++| ..+++.++.-|..+++++++ |+.|+|+|+ .|+.+++|+|..
T Consensus 562 ~~MiscGADksimF-r~~qk~~~g~~--f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 562 RKMISCGADKSIMF-RVNQKASSGRL--FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred eEEEeccCchhhhe-ehhccccCcee--ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence 57788889998853 4333 222 12222 13678888999999999999 999999999 699999999765
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.-.-+ .-.|..-|.|-|||+.|. |.|+-+.|..+|+|+++..||+.
T Consensus 639 ~~eG~--lIKv~lDPSgiY~atScs-----------dktl~~~Df~sgEcvA~m~GHsE--------------------- 684 (1080)
T KOG1408|consen 639 DHEGD--LIKVILDPSGIYLATSCS-----------DKTLCFVDFVSGECVAQMTGHSE--------------------- 684 (1080)
T ss_pred cCCCc--eEEEEECCCccEEEEeec-----------CCceEEEEeccchhhhhhcCcch---------------------
Confidence 43222 457889999999999996 99999999999999999999996
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|+.+-|.+|-+.|+|.|.||.|-||.+
T Consensus 685 -------------~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 685 -------------AVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -------------heeeeeecccchhheeecCCceEEEEEC
Confidence 8999999999999999999999999964
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=196.39 Aligned_cols=229 Identities=11% Similarity=0.126 Sum_probs=184.2
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCC-eEEEEe--cCCCEeEEEE------eCCCceeEEEEEcCCCcEEEEEeeCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKHVQEIKI------RSSSHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~~l~tl--~~~~V~~Vaf------s~s~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
.|+|+ |+|..|.+++.|+-||+|+...- +.-.++ .+..|.+++- ..+.+++|.+..+..|+.-..|.-..
T Consensus 18 ~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft 96 (933)
T KOG1274|consen 18 LICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFT 96 (933)
T ss_pred EEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeee
Confidence 79996 89999999999999999986544 222333 2456777776 24688999999998776543333222
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
-+.+.++|+- ++..+++||+|-.|||-++..+--..++++|...|.++.|.|+|.+||+++ ||+|++||+ +|.|..+
T Consensus 97 lp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 97 LPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred ccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 5678899987 466777799999999999999999999999999999999999999999999 999999999 6999998
Q ss_pred eccCCCC---cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCC
Q 012410 339 FEDHLLW---HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 415 (464)
Q Consensus 339 l~gH~~~---~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~ 415 (464)
|.+=..- ...-.+.-++|+|+|-.+|-.+- |++|++++..++..+.+|+....+
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-----------d~~Vkvy~r~~we~~f~Lr~~~~s------------ 232 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-----------DNTVKVYSRKGWELQFKLRDKLSS------------ 232 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeecc-----------CCeEEEEccCCceeheeecccccc------------
Confidence 8763221 00001457999999766666665 999999999999999999774430
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 416 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+..+.|||.|++||++.-||.|-|||
T Consensus 233 --------------------s~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 233 --------------------SKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred --------------------cceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 1478899999999999999999999998
No 118
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=1.9e-19 Score=188.83 Aligned_cols=242 Identities=12% Similarity=0.150 Sum_probs=164.1
Q ss_pred EEEEeccceeehhcc-----CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 92 IEIVAARDIVFALAH-----SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~-----~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..++|...|.++... +..+.+|| .+|.....+.. +...+.++.|||||+.|+.+|.. ..+ .++.+|
T Consensus 163 ~~g~f~~ria~v~~~~~~~~~~~i~i~d-~dg~~~~~lt~-~~~~v~~p~wSPDG~~la~~s~~-~~~------~~i~i~ 233 (429)
T PRK01742 163 IRGAFRTRIAYVVQKNGGSQPYEVRVAD-YDGFNQFIVNR-SSQPLMSPAWSPDGSKLAYVSFE-NKK------SQLVVH 233 (429)
T ss_pred CCCccCCEEEEEEEEcCCCceEEEEEEC-CCCCCceEecc-CCCccccceEcCCCCEEEEEEec-CCC------cEEEEE
Confidence 345666666665543 35888898 56776777744 66779999999999999987632 223 589999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. .... ..++...++|+ |||+.|++++ .|+.++||. |
T Consensus 234 dl~tg~~~----~l~~-~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~------------------------------~ 277 (429)
T PRK01742 234 DLRSGARK----VVAS-FRGHNGAPAFS-PDGSRLAFASSKDGVLNIYV------------------------------M 277 (429)
T ss_pred eCCCCceE----EEec-CCCccCceeEC-CCCCEEEEEEecCCcEEEEE------------------------------E
Confidence 99888742 1111 11344478997 8999998865 566655553 3
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCCcEEEEEe-
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~FspdgqllaS~s- 322 (464)
|+.+|++ ..+..+...+..++|+|+ +.+|+..+ .++..+||++.. +...+.+ ++.. ....|||||+.|+..+
T Consensus 278 d~~~~~~-~~lt~~~~~~~~~~wSpD-G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 278 GANGGTP-SQLTSGAGNNTEPSWSPD-GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred ECCCCCe-EeeccCCCCcCCEEECCC-CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 3333332 223322234567889884 66677655 688899998654 2223333 3433 4567999999999888
Q ss_pred CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC--CCCeEEEEEcc
Q 012410 323 NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTGKCLAKINA 399 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi--~tG~cl~tl~g 399 (464)
++.++ ||+ +|++......+. ..++.|+|||++|+.++. ++.+++|++ .+|+++++|.+
T Consensus 353 ~~i~~-~Dl~~g~~~~lt~~~~-------~~~~~~sPdG~~i~~~s~-----------~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 353 DNVVK-QDLTSGSTEVLSSTFL-------DESPSISPNGIMIIYSST-----------QGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CCEEE-EECCCCCeEEecCCCC-------CCCceECCCCCEEEEEEc-----------CCCceEEEEEECCCCceEEccC
Confidence 76554 998 687654333322 346889999999999886 788888876 47999999998
Q ss_pred CCC
Q 012410 400 TNC 402 (464)
Q Consensus 400 h~~ 402 (464)
|..
T Consensus 414 ~~g 416 (429)
T PRK01742 414 SDG 416 (429)
T ss_pred CCC
Confidence 876
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=1.5e-19 Score=187.97 Aligned_cols=273 Identities=14% Similarity=0.128 Sum_probs=218.3
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCC--CCcccceeeccccCceEEEEeCCC
Q 012410 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKP--DSGFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 121 l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~--~~~~~l~~~~~~~~~~~VaFs~pd 197 (464)
+.+| .|.++|-.+..|...+.+.| ++- +-||||||.. |.- ...+.-++.+ .++.++... ||
T Consensus 413 ~~tL--~HGEvVcAvtIS~~trhVyT----gGk-------gcVKVWdis~pg~k~PvsqLdcl~rd--nyiRSckL~-pd 476 (705)
T KOG0639|consen 413 INTL--AHGEVVCAVTISNPTRHVYT----GGK-------GCVKVWDISQPGNKSPVSQLDCLNRD--NYIRSCKLL-PD 476 (705)
T ss_pred hhhh--ccCcEEEEEEecCCcceeEe----cCC-------CeEEEeeccCCCCCCccccccccCcc--cceeeeEec-CC
Confidence 4454 58999999999999998877 444 5899999833 221 1112222222 445588886 89
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEE--Eec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLY--SIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~--tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
|+.|..|+.-.|+-||||...+.-- .|. .-..+.+++||+ .|+.|.|||+.+..+++.|++|...+.+
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc 556 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 556 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee
Confidence 9999999999999999999766532 232 234566666664 8999999999999999999998899999
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-CCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCC
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL 343 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~ 343 (464)
|+.+. ++-+|-+|+-|.|||.||+++|.-++. .. ...|.++-.+|.+..+|.|- ++.|.|-..+|.....|.-|.
T Consensus 557 Idis~-dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlhe 633 (705)
T KOG0639|consen 557 IDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHE 633 (705)
T ss_pred EEecC-CCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccc
Confidence 99877 588999999999999999999875432 11 24688888899999999999 999999888888888888887
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.- |-++-|.+=|++.+|.++ |.-++.|...-|.-|-..+..+
T Consensus 634 Sc-----VLSlKFa~cGkwfvStGk-----------DnlLnawrtPyGasiFqskE~S---------------------- 675 (705)
T KOG0639|consen 634 SC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGASIFQSKESS---------------------- 675 (705)
T ss_pred cE-----EEEEEecccCceeeecCc-----------hhhhhhccCccccceeeccccC----------------------
Confidence 75 899999999999999998 9999999987777766554443
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+...|-|.++|+|||.|+...|+.
T Consensus 676 -------------sVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 676 -------------SVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred -------------cceeeeeccCceEEEecCCCcceEEEE
Confidence 799999999999999999998777653
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.9e-19 Score=181.70 Aligned_cols=285 Identities=13% Similarity=0.168 Sum_probs=216.4
Q ss_pred ccEeeEeecCCC--ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec-ccc-CceEEEE
Q 012410 118 NRRICFLNVSPD--EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SLK-WPGFVEF 193 (464)
Q Consensus 118 g~~l~~ln~~~~--~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-~~~-~~~~VaF 193 (464)
-++|+..|.+|. ..|.||-|.|.-..|.+ ++.| ++++|..| .|+.+. ..++- ..+ .+...+|
T Consensus 200 ~krlkDaNa~~ps~~~I~sv~FHp~~plllv----aG~d------~~lrifqv-DGk~N~---~lqS~~l~~fPi~~a~f 265 (514)
T KOG2055|consen 200 IKRLKDANAAHPSHGGITSVQFHPTAPLLLV----AGLD------GTLRIFQV-DGKVNP---KLQSIHLEKFPIQKAEF 265 (514)
T ss_pred eEeecccccCCcCcCCceEEEecCCCceEEE----ecCC------CcEEEEEe-cCccCh---hheeeeeccCccceeee
Confidence 346666776554 46999999999999999 5677 89999885 556543 12211 112 2236899
Q ss_pred eCCCCc-EEEEecCCCcEEEEeCCCCeEEEE-----ecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeC
Q 012410 194 DDVNGK-VLTYSAQDSIYKVFDLKNYTMLYS-----ISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 194 s~pdGk-~LaSgs~D~tiKlWdl~tg~~l~t-----l~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~ 259 (464)
. |+|+ .+.+++...-+-.|||.+++..+. .....+...++|++ ..+-|.|+...|++.+.+|+-.
T Consensus 266 ~-p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie 344 (514)
T KOG2055|consen 266 A-PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE 344 (514)
T ss_pred c-CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec
Confidence 7 8999 899999999999999999886432 22234556666663 5578999999999999999854
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-CceEEEEEcCCCcEEEEEe-CCeEEEEeC------
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF------ 331 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~FspdgqllaS~s-D~TIklWd~------ 331 (464)
+.+..+.|+. ++..|++.+.+|.|.+||+++..|++.+.... -.-.+++.|++|++||+|| -|-|-|+|.
T Consensus 345 -G~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 345 -GVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred -cEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 7789999997 46778888899999999999999999876542 2335788899999999999 999999993
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
.-+.++++..-... |.++.|+||+++||.+|. ..+.++||=.+.+-. ++ ++
T Consensus 423 ~~PkPik~~dNLtt~-----Itsl~Fn~d~qiLAiaS~---------~~knalrLVHvPS~T---VF---sN-------- 474 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTA-----ITSLQFNHDAQILAIASR---------VKKNALRLVHVPSCT---VF---SN-------- 474 (514)
T ss_pred CCCCchhhhhhhhee-----eeeeeeCcchhhhhhhhh---------ccccceEEEecccee---ee---cc--------
Confidence 13456666555544 889999999999999885 347889998765422 22 22
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|...+..+..|++++|||.|-.||-|+++|.|+||.+
T Consensus 475 -----------------fP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 475 -----------------FPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred -----------------CCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 2233344559999999999999999999999999963
No 121
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=4.6e-19 Score=175.60 Aligned_cols=230 Identities=15% Similarity=0.207 Sum_probs=172.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCC-CeEEEE-e--cCCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYS-I--SDKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~t-g~~l~t-l--~~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~ 257 (464)
.++||+...-.|+.||.|+|||+|++++ |+..-. . ++..|.+++++. +-|+.+|+||+++|+..+.-.
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeee
Confidence 7999843666777899999999999996 555421 1 157888888864 588999999999998776655
Q ss_pred eCCcceeeEEEEccCCC-eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc
Q 012410 258 HLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 334 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~-~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge 334 (464)
|. ..++.+.|++..+- -|++||.|+|||.||.++.+.+.++.=- +.+++.. -...+++.+. ++.|.+++++ +.
T Consensus 112 Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~D--v~~pm~vVata~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 112 HD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAAD--VLYPMAVVATAERHIAVYNLENPP 187 (347)
T ss_pred cc-cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehh--ccCceeEEEecCCcEEEEEcCCCc
Confidence 54 88999999986543 3455899999999999999988775522 3455543 3344566666 9999999994 33
Q ss_pred -eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC--eEEEEEccCCCCCCcccccC
Q 012410 335 -LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 335 -~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG--~cl~tl~gh~~~~~~~~~~~ 411 (464)
..+..+-...|. +++|+.-+|++..|-||- .|.+-|-.|..+ +---+|+.|..
T Consensus 188 te~k~~~SpLk~Q----~R~va~f~d~~~~alGsi-----------EGrv~iq~id~~~~~~nFtFkCHR~--------- 243 (347)
T KOG0647|consen 188 TEFKRIESPLKWQ----TRCVACFQDKDGFALGSI-----------EGRVAIQYIDDPNPKDNFTFKCHRS--------- 243 (347)
T ss_pred chhhhhcCcccce----eeEEEEEecCCceEeeee-----------cceEEEEecCCCCccCceeEEEecc---------
Confidence 333444444453 889999999998888887 888999888877 44557777864
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+. .+. ..-.|.+|+|+|.-.+|+|++.||++-.||
T Consensus 244 -~~~--~~~-------------~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 244 -TNS--VND-------------DVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred -CCC--CCC-------------ceEEecceEeecccceEEEecCCceEEEec
Confidence 000 000 122899999999999999999999999998
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=1e-17 Score=182.19 Aligned_cols=350 Identities=12% Similarity=0.099 Sum_probs=239.6
Q ss_pred hhhhccccc-eEEEEec---cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcc
Q 012410 82 LPFLMKRTK-VIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (464)
Q Consensus 82 l~~l~~~s~-v~~~~~a---g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~ 157 (464)
++++...-. +..+.-. =|-|..+++.|-.++|++.+|+.+++++. +..-|.++--+|==+.+|+ |-.+
T Consensus 152 ~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPaLDVVai----G~~~--- 223 (910)
T KOG1539|consen 152 STFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPALDVVAI----GLEN--- 223 (910)
T ss_pred ceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecc-cccceeEeccCCcceEEEE----eccC---
Confidence 455555544 4444444 23345678999999999999999999976 5577999999997777776 7777
Q ss_pred cceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEE
Q 012410 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIK 233 (464)
Q Consensus 158 L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Va 233 (464)
++|-|.+++.++.+.+|+.= .+.+.+++|. .||. +||+|..-|.+-+|||+.-+++..+. .+.|....
T Consensus 224 ---G~ViifNlK~dkil~sFk~d----~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~ 295 (910)
T KOG1539|consen 224 ---GTVIIFNLKFDKILMSFKQD----WGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGAT 295 (910)
T ss_pred ---ceEEEEEcccCcEEEEEEcc----ccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccce
Confidence 89999999999975443321 2455589997 6876 57778888999999999888765444 23444444
Q ss_pred E--------eCCCceeEEEEEcC--CC--cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEE---------------
Q 012410 234 I--------RSSSHVPLKILSIE--DG--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ--------------- 286 (464)
Q Consensus 234 f--------s~s~d~tIklWdi~--tG--~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIk--------------- 286 (464)
| +.+.|..+|+|=.. +| ..|+.=.+|..+-..|.|-...+..+++.+.|.|.+
T Consensus 296 fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 296 FLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred ecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence 4 44677888888443 44 334433355555567777654445555555565544
Q ss_pred --------------------------------------------------EEECCCCcE-EEEcccC-----CCceEEEE
Q 012410 287 --------------------------------------------------ILDVRNAEL-MEVSRTE-----FMTPSAFI 310 (464)
Q Consensus 287 --------------------------------------------------IWDv~tg~~-l~~l~gh-----~~~v~sv~ 310 (464)
-|+.++... ..+|..- ...+.||+
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 366555443 2333322 14678888
Q ss_pred EcCCCcEEEEEe-CCeEEEEeC-CCceEEEe---ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 311 FLYENQLFLTFR-NRTVAVWNF-RGELVTSF---EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~-~Ge~l~tl---~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
.|+=|+...-|+ .|+|.++|. .|-...+| ..|... |..|+.---+++++|++. ||-++.
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~-----V~gla~D~~n~~~vsa~~-----------~Gilkf 519 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE-----VTGLAVDGTNRLLVSAGA-----------DGILKF 519 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc-----eeEEEecCCCceEEEccC-----------cceEEE
Confidence 999999888888 999999999 59988999 478777 889999888999999986 999999
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccc----cc----cccCEEEEEEcCCCCEEEEeeCCC
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV----GE----ALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~l~~V~slafspDg~~LaSgs~Dg 457 (464)
||..++..+++++--.. +....-.|.....|..--+..+.+-..+ -+ +-..|+++.|||||+.|+|++.|+
T Consensus 520 w~f~~k~l~~~l~l~~~-~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~ 598 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGSS-ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS 598 (910)
T ss_pred EecCCcceeeeeccCCC-cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence 99988877777643222 1111111111111121122222222211 12 223899999999999999999999
Q ss_pred cEEeccC
Q 012410 458 LVHVWSN 464 (464)
Q Consensus 458 tVrlWd~ 464 (464)
+||+||.
T Consensus 599 tIr~wDl 605 (910)
T KOG1539|consen 599 TIRTWDL 605 (910)
T ss_pred cEEEEec
Confidence 9999994
No 123
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=1.1e-17 Score=167.97 Aligned_cols=271 Identities=14% Similarity=0.157 Sum_probs=175.4
Q ss_pred hccCCeEEeeeccc-cc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cCCCCCcccc
Q 012410 104 LAHSGVCAAFSRET-NR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFAL 179 (464)
Q Consensus 104 l~~~g~~~~~~~~~-g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G~~~~~~~l 179 (464)
-..++.+.+|++.+ |+ .+..+. .......++++|+|+.|.+++ ..+ ..+.+|++. .|++.. .
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~--~~~-------~~i~~~~~~~~g~l~~---~ 73 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGV--RPE-------FRVLSYRIADDGALTF---A 73 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEE--CCC-------CcEEEEEECCCCceEE---e
Confidence 35788999999864 43 455553 223467889999999998744 333 477788885 444310 0
Q ss_pred eeeccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCC-CeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe
Q 012410 180 FESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKN-YTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 180 ~~~~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~t-g~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~ 257 (464)
-+....++|..|+|+ |||+.|.+++. ++.|.+||+.+ |... +.+..+.
T Consensus 74 ~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~-----------------------------~~~~~~~ 123 (330)
T PRK11028 74 AESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPV-----------------------------APIQIIE 123 (330)
T ss_pred eeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCC-----------------------------Cceeecc
Confidence 111123567799997 89998887764 78899998753 2211 0111111
Q ss_pred eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCC-CcEEE------EcccCCCceEEEEEcCCCcEEEEEe--CCeEE
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELME------VSRTEFMTPSAFIFLYENQLFLTFR--NRTVA 327 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g~~l~------~l~gh~~~v~sv~FspdgqllaS~s--D~TIk 327 (464)
+. .....++|+| ++..++++. .+++|.+||+.+ |++.. .... ...+..++|+|||+++.+.. +++|.
T Consensus 124 ~~-~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~ 200 (330)
T PRK11028 124 GL-EGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVD 200 (330)
T ss_pred CC-CcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEE
Confidence 11 1234577877 456676655 789999999987 43321 1111 24588899999999987776 89999
Q ss_pred EEeCC---Cc--eEEEeccCCC--CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 328 VWNFR---GE--LVTSFEDHLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 328 lWd~~---Ge--~l~tl~gH~~--~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+||++ |+ +++++..+.. ..+. ....+.|+|||++|+.++. .+++|.+|++.+..-..++.+|
T Consensus 201 v~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~i~~~pdg~~lyv~~~----------~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 201 VWQLKDPHGEIECVQTLDMMPADFSDTR-WAADIHITPDGRHLYACDR----------TASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred EEEEeCCCCCEEEEEEEecCCCcCCCCc-cceeEEECCCCCEEEEecC----------CCCeEEEEEEeCCCCeEEEeEE
Confidence 99983 43 3555543211 0000 0346899999999998754 3789999998654322344444
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC-CCcEEecc
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR-HGLVHVWS 463 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~-DgtVrlWd 463 (464)
... + ...+.++|+|||+.|++++. +++|.+|+
T Consensus 270 ~~~---------~----------------------~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 270 QPT---------E----------------------TQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred Eec---------c----------------------ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 320 0 03456899999999998886 99999995
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-18 Score=173.21 Aligned_cols=221 Identities=14% Similarity=0.201 Sum_probs=164.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCe----EEEEe--cCCCEeEEEE-eC---------CCceeEEEEEcC----C
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSI--SDKHVQEIKI-RS---------SSHVPLKILSIE----D 249 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~----~l~tl--~~~~V~~Vaf-s~---------s~d~tIklWdi~----t 249 (464)
.|.|+ +.|+.+|+||.|+++||||....+ |--.. ++..|+-|.+ +| +.|+|++||.=. .
T Consensus 18 dVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~ 96 (361)
T KOG2445|consen 18 DVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE 96 (361)
T ss_pred eeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence 79996 899999999999999999976433 22222 2677999998 33 699999999641 1
Q ss_pred -----CcEEEEEeeCCcceeeEEEEccCCC-eEEEEeCCCeEEEEECCC-Cc-----EEEEcc-------cCCCceEEEE
Q 012410 250 -----GTVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN-AE-----LMEVSR-------TEFMTPSAFI 310 (464)
Q Consensus 250 -----G~~l~tl~~~~~~~~~V~F~~~~~~-~lla~s~D~tIkIWDv~t-g~-----~l~~l~-------gh~~~v~sv~ 310 (464)
-....+|......|..|.|.|..-| +|++.+.||++||++.-. .+ +.+.++ .+...-.+|.
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 1234566655567899999996644 555578999999997543 22 222222 2334455677
Q ss_pred EcC---CCcEEEEEeCC------eEEEEeC-C-C-ce--EEEeccCCCCcCCCCeeEEEECCC----CCEEEEEecCCCc
Q 012410 311 FLY---ENQLFLTFRNR------TVAVWNF-R-G-EL--VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCKAEPE 372 (464)
Q Consensus 311 Fsp---dgqllaS~sD~------TIklWd~-~-G-e~--l~tl~gH~~~~~~~~v~svafSpD----g~~LaSgs~~~~~ 372 (464)
++| .-++||.|+|. .++||.. + | ++ +.+|.||... |.+|+|.|+ =.+||.+|+
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-----I~di~wAPn~Gr~y~~lAvA~k---- 247 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-----IRDISWAPNIGRSYHLLAVATK---- 247 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-----ceeeeeccccCCceeeEEEeec----
Confidence 775 45789999966 8999998 3 6 44 4489999988 889999996 468999998
Q ss_pred cccccCCCCeEEEEeCCCCeE---------------------EEEEccCCCCCCcccccCCCCCCccccccccccccccc
Q 012410 373 DQWMEGSAGSINVSSILTGKC---------------------LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 431 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~c---------------------l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (464)
|| |+||++.. .| +..+.+|++
T Consensus 248 -------Dg-v~I~~v~~-~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~----------------------------- 289 (361)
T KOG2445|consen 248 -------DG-VRIFKVKV-ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG----------------------------- 289 (361)
T ss_pred -------Cc-EEEEEEee-ccchhhhhcccCCCCccccceEEeeeccCCCC-----------------------------
Confidence 99 99999853 22 223334443
Q ss_pred cccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 432 GEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 432 ~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.||.+.|+--|.+|+|.+.||+||||.
T Consensus 290 -----~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 290 -----EVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred -----ceEEEEEeeeeeEEeecCCCceeeehh
Confidence 899999999999999999999999995
No 125
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=5.3e-19 Score=175.79 Aligned_cols=268 Identities=11% Similarity=0.147 Sum_probs=213.2
Q ss_pred cceEEEEec--cceeehhccCCeEEeeeccc-----------------c-cEeeEeecCCCceEEEEEEeeCCCEEEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRET-----------------N-RRICFLNVSPDEVIRSLFYNKNNDSLITVS 148 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~-----------------g-~~l~~ln~~~~~~i~Sv~fs~~g~~l~svS 148 (464)
++.+...++ |.++|+++.|--|+++|++. + -.|.+| --|.+.|..|.|.|-..+||+
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS-- 189 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILIS-- 189 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhheEEe--
Confidence 455555565 99999999999999999871 1 246777 458888999999999999999
Q ss_pred eecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---
Q 012410 149 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--- 225 (464)
Q Consensus 149 a~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--- 225 (464)
++.| .++|+.|+..--....++.|+.. -.+.++.|. |.|.+|+-|.+--+++|+|++|+||..+-.
T Consensus 190 --~srD------~tvKlFDfsK~saKrA~K~~qd~--~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 190 --GSRD------NTVKLFDFSKTSAKRAFKVFQDT--EPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred --ccCC------CeEEEEecccHHHHHHHHHhhcc--ceeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 5666 79999998554444566777642 123389996 999999999999999999999999976432
Q ss_pred --CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC
Q 012410 226 --DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 293 (464)
Q Consensus 226 --~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg 293 (464)
.+.|.+|.+|+ +.|+-|||||=-+++|+.||. |....+-+..|.. ++.++|+++.|.++|||.+.||
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCC
Confidence 46799999986 589999999999999999998 5556778888977 4677888899999999999999
Q ss_pred cEEEEcccC-----CCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEec-cCCCCcCCCCeeEEEECCCCCEEE
Q 012410 294 ELMEVSRTE-----FMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFE-DHLLWHPDCNTNNIYITSDQDLII 364 (464)
Q Consensus 294 ~~l~~l~gh-----~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~La 364 (464)
.++++..|- +..-...+|+..-.+++.-. .+.+--||. ++..++-+. ||.+. ++.+.=||.+--++
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWIVHSPVEPAFM 412 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEEEeCCCCCcee
Confidence 999977653 12223344777666666655 567778998 566555443 89887 78899999999999
Q ss_pred EEecCCCccccccCCCCeEEEEe
Q 012410 365 SYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~DgtIklWd 387 (464)
++|. |-.+|.|-
T Consensus 413 Tcsd-----------D~raRFWy 424 (430)
T KOG0640|consen 413 TCSD-----------DFRARFWY 424 (430)
T ss_pred eecc-----------cceeeeee
Confidence 9987 99999995
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=178.60 Aligned_cols=244 Identities=20% Similarity=0.217 Sum_probs=167.6
Q ss_pred cEEEEecCCCc-EEEEeCCCCeEEEEecCC-C--------Ee-EEEEeCC-CceeEEEEEcCCCcEEE-EEeeCCcceee
Q 012410 199 KVLTYSAQDSI-YKVFDLKNYTMLYSISDK-H--------VQ-EIKIRSS-SHVPLKILSIEDGTVLK-VFYHLLHRNKK 265 (464)
Q Consensus 199 k~LaSgs~D~t-iKlWdl~tg~~l~tl~~~-~--------V~-~Vafs~s-~d~tIklWdi~tG~~l~-tl~~~~~~~~~ 265 (464)
-+..++|.|.. +.+||++||..+.++... . |. +-..+.. .---|-+|.+..-.... .+. ..+.+..
T Consensus 8 ~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v-~Pg~v~a 86 (476)
T KOG0646|consen 8 TVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIV-LPGPVHA 86 (476)
T ss_pred EEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcc-cccceee
Confidence 35566777776 999999999988776532 1 11 0001111 22258889885322222 111 1245677
Q ss_pred EEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC----------CC
Q 012410 266 VDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF----------RG 333 (464)
Q Consensus 266 V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~----------~G 333 (464)
++-+|. +.+|.+| .-+.|.||.+.+|+++.++.+|.+.|+.+.|+.||.+|.|+| |+-|.+|.+ +-
T Consensus 87 l~s~n~--G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 87 LASSNL--GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred eecCCC--ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence 776663 5666655 999999999999999999999999999999999999999999 999999983 13
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCC--CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSD--QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpD--g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
+.+..|.+|+.. |.++.+++- .-.|+|+|. |.|||+||+..|..|.++---.. ++....++
T Consensus 165 ~p~~~f~~Htls-----ITDl~ig~Gg~~~rl~TaS~-----------D~t~k~wdlS~g~LLlti~fp~s-i~av~lDp 227 (476)
T KOG0646|consen 165 KPLHIFSDHTLS-----ITDLQIGSGGTNARLYTASE-----------DRTIKLWDLSLGVLLLTITFPSS-IKAVALDP 227 (476)
T ss_pred cceeeeccCcce-----eEEEEecCCCccceEEEecC-----------CceEEEEEeccceeeEEEecCCc-ceeEEEcc
Confidence 468899999998 677777664 356777765 99999999999999998743321 22111111
Q ss_pred ----------CCCCCccccccccc----------------ccccccc-ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 412 ----------SSSTGKSKKLNKSS----------------YIRSTVG-EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 412 ----------~~~~~~~~~~~~~~----------------~~~~~~~-~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|. +.-....... .+...++ +.=..|++|++|-||..|+||+.||+|.|||
T Consensus 228 ae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 228 AERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 111 0011111111 1111122 1113899999999999999999999999998
No 127
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=4.4e-18 Score=173.29 Aligned_cols=221 Identities=16% Similarity=0.182 Sum_probs=174.3
Q ss_pred ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcC
Q 012410 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIE 248 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~ 248 (464)
++|+.+...+++. +|.+.+-.++|++-|...|||||.|.||+||++-.+-+...+
T Consensus 66 k~Gr~d~~~P~v~-GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------------------ 120 (472)
T KOG0303|consen 66 KTGRMDASYPLVC-GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------------------ 120 (472)
T ss_pred cccccCCCCCCcc-CccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------------------
Confidence 7888887777665 244444479999889999999999999999998654443322
Q ss_pred CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEE
Q 012410 249 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 327 (464)
Q Consensus 249 tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIk 327 (464)
-+....|.+|..+|.-|++.|--..-||+++.|.+|.|||+.||+.+-++. |.+.|+++.|+.||.+|+|.+ |+.||
T Consensus 121 -tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvR 198 (472)
T KOG0303|consen 121 -TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVR 198 (472)
T ss_pred -ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeE
Confidence 155677888888999999999767788889999999999999999988888 999999999999999999999 99999
Q ss_pred EEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC---CeEEEEEccCCCC
Q 012410 328 VWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKCLAKINATNCS 403 (464)
Q Consensus 328 lWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t---G~cl~tl~gh~~~ 403 (464)
|||. +|+.+..-.+|..--+ . -+.|-.+|+ |++.+. +.-++..|-|||-.+ .--+.+|...+
T Consensus 199 v~dpr~~~~v~e~~~heG~k~---~-Raifl~~g~-i~tTGf-------sr~seRq~aLwdp~nl~eP~~~~elDtSn-- 264 (472)
T KOG0303|consen 199 VIDPRRGTVVSEGVAHEGAKP---A-RAIFLASGK-IFTTGF-------SRMSERQIALWDPNNLEEPIALQELDTSN-- 264 (472)
T ss_pred EEcCCCCcEeeecccccCCCc---c-eeEEeccCc-eeeecc-------ccccccceeccCcccccCcceeEEeccCC--
Confidence 9999 6999998888887533 2 355778999 555554 234589999998533 33344443332
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs~DgtVrlWd 463 (464)
.|.==+|+||.+.|| +|-.|+.||.+.
T Consensus 265 ---------------------------------Gvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 265 ---------------------------------GVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred ---------------------------------ceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 576679999999998 555899999763
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=174.04 Aligned_cols=199 Identities=14% Similarity=0.285 Sum_probs=139.0
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-----EEE-EecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCc
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLY-SISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-----~l~-tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
+..|+|| .|||.||+++.|++|+|||++.-+ |++ ++.-+.-..|+|+|+- ..|-+| +..|.-|..+.-
T Consensus 89 vt~~~Fs-SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc-~s~vv~-~~~g~~l~vyk~--- 162 (420)
T KOG2096|consen 89 VTDVAFS-SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC-KSVVVS-VKRGNKLCVYKL--- 162 (420)
T ss_pred eeeeEEc-CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc-ceEEEE-EccCCEEEEEEe---
Confidence 3379998 799999999999999999988632 221 2332344556666541 122222 223433332220
Q ss_pred ceeeEEEEccCCCeEEEEeCCC----eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceE
Q 012410 262 RNKKVDFIEQFNEKLLVKQENE----NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 336 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~----tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l 336 (464)
.+.+|| +.-=|| -++.-+-|+..+-.+-.-..+.+|+|++ |.+|-||++.|++|
T Consensus 163 ----------------~K~~dG~~~~~~v~~D-----~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L 221 (420)
T KOG2096|consen 163 ----------------VKKTDGSGSHHFVHID-----NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLL 221 (420)
T ss_pred ----------------eecccCCCCccccccc-----ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCcee
Confidence 111121 111122 1122234555555666778999999999 99999999999999
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC---C-----eEEEEEccCCCCCCccc
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---G-----KCLAKINATNCSPKVDD 408 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t---G-----~cl~tl~gh~~~~~~~~ 408 (464)
.+..-.+.. -...+.||||++||+++. ---||+|.+-= | +-+-.|+||+.
T Consensus 222 ~~idtnq~~-----n~~aavSP~GRFia~~gF-----------TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s------ 279 (420)
T KOG2096|consen 222 QSIDTNQSS-----NYDAAVSPDGRFIAVSGF-----------TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS------ 279 (420)
T ss_pred eeecccccc-----ccceeeCCCCcEEEEecC-----------CCCceEEEEEeccCcchhhhhhhheeccchh------
Confidence 999877765 345789999999999987 56799998632 2 23457889987
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.+++|||+...++|.|.||++||||
T Consensus 280 ----------------------------aV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 280 ----------------------------AVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred ----------------------------heeeeeeCCCcceeEEEecCCcEEEee
Confidence 899999999999999999999999998
No 129
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.4e-18 Score=186.21 Aligned_cols=229 Identities=16% Similarity=0.206 Sum_probs=177.6
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC--CcEEEEecCCC
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDS 208 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd--Gk~LaSgs~D~ 208 (464)
-+|+|+.||||+.||+ + | .|.++++.++..=...-...-|+.|++ +++||.|+ -++|||+|.|.
T Consensus 461 G~R~~~vSp~gqhLAs----G-D-----r~GnlrVy~Lq~l~~~~~~eAHesEil----cLeyS~p~~~~kLLASasrdR 526 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLAS----G-D-----RGGNLRVYDLQELEYTCFMEAHESEIL----CLEYSFPVLTNKLLASASRDR 526 (1080)
T ss_pred ceEEEEECCCcceecc----c-C-----ccCceEEEEehhhhhhhheecccceeE----EEeecCchhhhHhhhhccCCc
Confidence 5899999999999998 3 3 258899999866555434455666655 88998664 47899999999
Q ss_pred cEEEEeCC-CCeEEEEecC--CCEeEEEEeC----------CCceeEEEEEcC---CCcEEEEEeeC--CcceeeEEEEc
Q 012410 209 IYKVFDLK-NYTMLYSISD--KHVQEIKIRS----------SSHVPLKILSIE---DGTVLKVFYHL--LHRNKKVDFIE 270 (464)
Q Consensus 209 tiKlWdl~-tg~~l~tl~~--~~V~~Vafs~----------s~d~tIklWdi~---tG~~l~tl~~~--~~~~~~V~F~~ 270 (464)
-|.|+|++ +|.++.||.+ ..|.+|+|-. ..|+.|..=..+ +|.....-.+. ....+.++.-|
T Consensus 527 lIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 527 LIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred eEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC
Confidence 99999998 7888889874 5799999943 345544332111 13221111110 02336666545
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEEccc---CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCC
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW 345 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g---h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~ 345 (464)
.-+.+++++.|++|+|+|+++|+..++++| |...+..|..-|-|-++|++. |+|+-+.|+ +|||+.+..||..-
T Consensus 607 -~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 607 -TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred -CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 346777789999999999999999998865 666788899999999999999 999999999 89999999999987
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|..+-|++|-+.|+|.+. ||.|-||.+..
T Consensus 686 -----VTG~kF~nDCkHlISvsg-----------DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 -----VTGVKFLNDCKHLISVSG-----------DGCIFVWKLPL 714 (1080)
T ss_pred -----eeeeeecccchhheeecC-----------CceEEEEECch
Confidence 889999999999999986 99999999853
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.8e-19 Score=193.04 Aligned_cols=222 Identities=12% Similarity=0.206 Sum_probs=177.0
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCC---CeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEE
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~t---g~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl 256 (464)
|++..-+.++||+++..+.|-+|||.- -++++.+. ...|..+.|++ +.|++||+||+..-.-..|+
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~ 172 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF 172 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc
Confidence 555445668999999999999999986 44555554 45688888854 79999999999988888888
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-C
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 333 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-G 333 (464)
.+....++.|.|+|..+.+++++.+.|++++||++. .+|...+..|...|..+.++|++.+||||+ |++|||||.+ +
T Consensus 173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 887788899999998777888889999999999987 668889999999999999999999999999 9999999996 4
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccCCCCCCcccccC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCSPKVDDELG 411 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh~~~~~~~~~~~ 411 (464)
+.-....=|+.. .|.-|.|-|+-. .||+++. ..|-.|+||||.--- .-+++..|++
T Consensus 253 ~~~~~~tInTia----pv~rVkWRP~~~~hLAtcsm---------v~dtsV~VWDvrRPYIP~~t~~eH~~--------- 310 (839)
T KOG0269|consen 253 RAKPKHTINTIA----PVGRVKWRPARSYHLATCSM---------VVDTSVHVWDVRRPYIPYATFLEHTD--------- 310 (839)
T ss_pred CccceeEEeecc----eeeeeeeccCccchhhhhhc---------cccceEEEEeeccccccceeeeccCc---------
Confidence 432222223332 278899999765 5666554 458999999985422 3478888987
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEeeCCCcE
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLV 459 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp-Dg~~LaSgs~DgtV 459 (464)
.|+.++|.. |...|-|+|.||+|
T Consensus 311 -------------------------~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 311 -------------------------SVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred -------------------------cccceeccCCCceeeEeecCccHH
Confidence 667777754 67788999999986
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.5e-18 Score=176.55 Aligned_cols=233 Identities=12% Similarity=0.123 Sum_probs=171.6
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
.+.+|.+..-.....- .--.+.|.+++-+|+|.+|+. +... +.+.||.+.+|.++..+. .|...+
T Consensus 62 ~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~a----g~i~------g~lYlWelssG~LL~v~~----aHYQ~I 126 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLA----GTIS------GNLYLWELSSGILLNVLS----AHYQSI 126 (476)
T ss_pred cccccccCchhhhhhh-cccccceeeeecCCCceEEEe----eccc------CcEEEEEeccccHHHHHH----hhccce
Confidence 6677754332222211 112356999999999998877 5466 789999999999975432 233445
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCc---eeEEEEEcCCCcEEEEEeeCCcceee
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSH---VPLKILSIEDGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d---~tIklWdi~tG~~l~tl~~~~~~~~~ 265 (464)
..+.|+ .||.+|.|||.|+-|.+|++-+ + ++++.| .|+.+|+-+ .-.|..
T Consensus 127 TcL~fs-~dgs~iiTgskDg~V~vW~l~~------l---------v~a~~~~~~~p~~~f~~H-----------tlsITD 179 (476)
T KOG0646|consen 127 TCLKFS-DDGSHIITGSKDGAVLVWLLTD------L---------VSADNDHSVKPLHIFSDH-----------TLSITD 179 (476)
T ss_pred eEEEEe-CCCcEEEecCCCccEEEEEEEe------e---------cccccCCCccceeeeccC-----------cceeEE
Confidence 589998 6999999999999999998632 1 233333 344444433 223322
Q ss_pred --EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-----------
Q 012410 266 --VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF----------- 331 (464)
Q Consensus 266 --V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~----------- 331 (464)
+.+.+ -+.+++++|+|.|+|+||+..|.++.+..-- ..+.+++..|-...+-.|. +|.|-+=++
T Consensus 180 l~ig~Gg-~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 180 LQIGSGG-TNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred EEecCCC-ccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc
Confidence 22222 2478999999999999999999998865533 4688999999999988888 998877664
Q ss_pred ------CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 332 ------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 332 ------~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.++-+..|.||.+.- .|..++++-||.+|+||+. ||+|.|||+.+-|||+++..
T Consensus 258 ~k~~~~~~t~~~~~~Gh~~~~---~ITcLais~DgtlLlSGd~-----------dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 258 QKGRHEENTQINVLVGHENES---AITCLAISTDGTLLLSGDE-----------DGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred ccccccccceeeeeccccCCc---ceeEEEEecCccEEEeeCC-----------CCCEEEEecchHHHHHHHhh
Confidence 234567899999831 2889999999999999987 99999999999999999964
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.79 E-value=1.8e-18 Score=178.05 Aligned_cols=202 Identities=10% Similarity=0.138 Sum_probs=160.4
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEc
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~ 270 (464)
+..-|.|-.++|+++..+.|-|||.....-.... .+ .+.|+ .+|.+|...-+++.|++
T Consensus 130 aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----~~-~~~Pd----------------l~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 130 ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-----SG-ECRPD----------------LRLKGHEKEGYGLSWNR 187 (422)
T ss_pred hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-----cc-cCCCc----------------eEEEeeccccccccccc
Confidence 4455677889999999999999997643211110 00 12222 23444434457899999
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcE-------EEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCC---CceEEE
Q 012410 271 QFNEKLLVKQENENLQILDVRNAEL-------MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR---GELVTS 338 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~-------l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~---Ge~l~t 338 (464)
+..+.||+++.|++|.+||+..... ...+.+|...|..|+|.| +.++|+|.+ |+.+.|||.+ -++.++
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~ 267 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS 267 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc
Confidence 8889999999999999999987543 457899999999999996 567888888 9999999984 345668
Q ss_pred eccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCC
Q 012410 339 FEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
-.+|... |++++|+| ++-+||+||. |+||+|||+.+ -+|+.++.+|..
T Consensus 268 ~~ah~~~-----vn~~~fnp~~~~ilAT~S~-----------D~tV~LwDlRnL~~~lh~~e~H~d-------------- 317 (422)
T KOG0264|consen 268 VKAHSAE-----VNCVAFNPFNEFILATGSA-----------DKTVALWDLRNLNKPLHTFEGHED-------------- 317 (422)
T ss_pred ccccCCc-----eeEEEeCCCCCceEEeccC-----------CCcEEEeechhcccCceeccCCCc--------------
Confidence 8899988 89999999 5667788775 99999999976 579999999997
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
.|..|.|||.-. .|||++.|+.+.|||.
T Consensus 318 --------------------ev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 318 --------------------EVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred --------------------ceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 899999999775 6899999999999995
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=3e-17 Score=175.94 Aligned_cols=286 Identities=10% Similarity=0.067 Sum_probs=204.1
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCC---EEEEEEeecCCCCcccceeeEEEEEeccCCCC--Ccccceeec
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND---SLITVSVYASDNFSSLKCRSTKIEYIRRGKPD--SGFALFESE 183 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~---~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~--~~~~l~~~~ 183 (464)
.|++||...-.-..++ .+|...|.++-+=|..+ .+.+ +..| +++.+|.++.-+.. .++++++.
T Consensus 35 ~Iav~dp~k~~i~t~l-~GH~a~VnC~~~l~~s~~~a~~vs----G~sD------~~v~lW~l~~~~~~~i~~~~g~~~- 102 (764)
T KOG1063|consen 35 AIAVADPEKILIVTTL-DGHVARVNCVHWLPTSEIVAEMVS----GDSD------GRVILWKLRDEYLIKIYTIQGHCK- 102 (764)
T ss_pred eEEEeCcccceeEEec-cCCccceEEEEEcccccccceEEE----ccCC------CcEEEEEEeehheEEEEeecCcce-
Confidence 5677775555555577 55989999999999888 4555 5555 79999999833332 12333222
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEec--CCCE--eEEEEeC----------CCceeEEEEEc
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHV--QEIKIRS----------SSHVPLKILSI 247 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~--~~~V--~~Vafs~----------s~d~tIklWdi 247 (464)
..+++. ..-+..+..+.|+++.+||.+.-+ |+.++. .+.+ .++++.| +++.-|+|..-
T Consensus 103 -----~~~cv~-a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 103 -----ECVCVV-ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred -----eEEEEE-eeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence 267775 233444444889999999997666 444443 1111 1222222 46677888877
Q ss_pred CCCcEEE--EEeeCCcceeeEEEEccCC-CeEEE-EeCCCeEEEEECCCCc---------------------EE---E--
Q 012410 248 EDGTVLK--VFYHLLHRNKKVDFIEQFN-EKLLV-KQENENLQILDVRNAE---------------------LM---E-- 297 (464)
Q Consensus 248 ~tG~~l~--tl~~~~~~~~~V~F~~~~~-~~lla-~s~D~tIkIWDv~tg~---------------------~l---~-- 297 (464)
.++++.+ .+++|..++++++|..+.+ +.+|+ +|.|.+||||.+.-+- ++ +
T Consensus 177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~ 256 (764)
T KOG1063|consen 177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR 256 (764)
T ss_pred CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE
Confidence 6666654 5668899999999998765 55666 5799999999875433 22 1
Q ss_pred -----EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC---CCceEE-----EeccCCCCcCCCCeeEEEECCCCCEE
Q 012410 298 -----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---RGELVT-----SFEDHLLWHPDCNTNNIYITSDQDLI 363 (464)
Q Consensus 298 -----~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~---~Ge~l~-----tl~gH~~~~~~~~v~svafSpDg~~L 363 (464)
++.||.++|+++-+.|++..|+|+| |.|+-+|.- +|--+- ...|.... -+..-|+|++..|
T Consensus 257 is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G-----F~g~lw~~n~~~i 331 (764)
T KOG1063|consen 257 ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG-----FWGGLWSPNSNVI 331 (764)
T ss_pred EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccc-----eeeEEEcCCCCEE
Confidence 3459999999999999998888999 999999985 243222 33344433 5788899999999
Q ss_pred EEEecCCCccccccCCCCeEEEEe-CCCCeEE--EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEE
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSS-ILTGKCL--AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 440 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWd-i~tG~cl--~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 440 (464)
++-+. -|-.++|- ...++|. ..+.||.. .|..
T Consensus 332 i~~g~-----------~Gg~hlWkt~d~~~w~~~~~iSGH~~----------------------------------~V~d 366 (764)
T KOG1063|consen 332 IAHGR-----------TGGFHLWKTKDKTFWTQEPVISGHVD----------------------------------GVKD 366 (764)
T ss_pred EEecc-----------cCcEEEEeccCccceeeccccccccc----------------------------------ccee
Confidence 98876 78999998 3334554 45678886 8999
Q ss_pred EEEcCCCCEEEEeeCCCcEEec
Q 012410 441 LFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 441 lafspDg~~LaSgs~DgtVrlW 462 (464)
|+++|.|..|.|.|.|+|-||.
T Consensus 367 v~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred eeecCCCCEEEEeccccceeee
Confidence 9999999999999999999985
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.1e-17 Score=163.60 Aligned_cols=276 Identities=15% Similarity=0.179 Sum_probs=202.2
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
+.-++|...+ ..+.-||+.|.+||+ |-.| +.+-|||..|-..-..+.. |...+.++++| +||
T Consensus 16 el~~tld~~~---a~~~~Fs~~G~~lAv----Gc~n------G~vvI~D~~T~~iar~lsa----H~~pi~sl~WS-~dg 77 (405)
T KOG1273|consen 16 ELTHTLDNPL---AECCQFSRWGDYLAV----GCAN------GRVVIYDFDTFRIARMLSA----HVRPITSLCWS-RDG 77 (405)
T ss_pred hhceeccCCc---cceEEeccCcceeee----eccC------CcEEEEEccccchhhhhhc----cccceeEEEec-CCC
Confidence 3445664433 679999999999999 5555 6888999977665333332 33445599998 899
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe------------eCCcce-e
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY------------HLLHRN-K 264 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~------------~~~~~~-~ 264 (464)
+.|.++|.|..|++||+..|.+++.+. +..||.+.|.|-.+.+.-.--++..-.+-.|. +.+..+ .
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence 999999999999999999999999887 78999999988544322111111111121221 111111 2
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-CceEEEEEcCCCcEEEEEe-CCeEEEEeCC--------Cc
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR--------GE 334 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~FspdgqllaS~s-D~TIklWd~~--------Ge 334 (464)
.+.|.+ .|++|++|-..|-+-++|..|-+|+..++--+ ..+..+.|+-.|+.|+.-. |++||.++.+ |+
T Consensus 158 ~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 158 HGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred cccccC-CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 223544 46788888899999999999999998877555 7889999999999999988 9999999852 22
Q ss_pred e--EEEec---cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccc
Q 012410 335 L--VTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 409 (464)
Q Consensus 335 ~--l~tl~---gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~ 409 (464)
. .+.|. ....| +.++||.||.+++.|+. ....+.||.-.+|..++.|.|..+
T Consensus 237 ~e~~~K~qDvVNk~~W------k~ccfs~dgeYv~a~s~----------~aHaLYIWE~~~GsLVKILhG~kg------- 293 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQW------KKCCFSGDGEYVCAGSA----------RAHALYIWEKSIGSLVKILHGTKG------- 293 (405)
T ss_pred cChhHHHHHHHhhhhh------hheeecCCccEEEeccc----------cceeEEEEecCCcceeeeecCCch-------
Confidence 2 12222 34446 57899999999998874 378999999999999999988653
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 410 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
| ..-.|.++|=...|+|- ..|+|++|.
T Consensus 294 -----------------------E---~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 294 -----------------------E---ELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred -----------------------h---heeecccccceeeeeec-cCCceEEEE
Confidence 1 33456888999999988 789999995
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.7e-17 Score=173.41 Aligned_cols=224 Identities=10% Similarity=0.103 Sum_probs=184.9
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE-EEec---CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEee
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS---DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l-~tl~---~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~ 258 (464)
++|||. ..+.||-|=.|++|-+|++.++=++ ..++ +..|.+++|++ +.++.|--||+.+++.++.+.-
T Consensus 30 slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 30 SLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred EEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecC
Confidence 899984 6667999999999999999976554 4555 56799999964 4778999999999999999886
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE--EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE 334 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~--~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge 334 (464)
....+|+++-.| .+..+++|++||.+.+.++..++... .|.-.+..+-++.|.|++..+|+|+ |+-|++||+ .|.
T Consensus 109 ~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 109 NGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ 187 (691)
T ss_pred CCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence 668889999887 56788889999988888988888653 4555568899999999999999999 999999999 587
Q ss_pred eEEEec---cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 335 LVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 335 ~l~tl~---gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
-++... +-...-..|.||+|.|-.|+. ||||.. .|+|+.||-..|..++.+..|..
T Consensus 188 t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS-----------~G~V~FWd~~~gTLiqS~~~h~a--------- 246 (691)
T KOG2048|consen 188 TLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDS-----------AGTVTFWDSIFGTLIQSHSCHDA--------- 246 (691)
T ss_pred eEEEeeecccccccCCceEEEEEEEeecCc-EEEecC-----------CceEEEEcccCcchhhhhhhhhc---------
Confidence 666111 111121335699999998865 667643 89999999999999999999986
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.|.+++-++++..+.+++.|+.|-.
T Consensus 247 -------------------------dVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 247 -------------------------DVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred -------------------------ceeEEEEcCCCCeEEEccCCCceEE
Confidence 9999999999999999999998743
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.8e-18 Score=164.66 Aligned_cols=239 Identities=10% Similarity=0.057 Sum_probs=176.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEEEeCC-CCc
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDV-NGK 199 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~p-dGk 199 (464)
+.+.-.|.+.|.++...--|..|||.| -| ++|||..++..... .++.+. ++.+.+.-|+|-+| -|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcs----SD------~tVkIf~v~~n~~s--~ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCS----SD------GTVKIFEVRNNGQS--KLLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeec----CC------ccEEEEEEcCCCCc--eeeeEecCCCCCeeEEeecccccCc
Confidence 344556999999999999999999955 44 79999999654431 122221 12233447888644 589
Q ss_pred EEEEecCCCcEEEEeCCCCeEE----EEecCCCEeEEEEeC----------CCceeEEEEEcCCC--cEEEEE-eeCCcc
Q 012410 200 VLTYSAQDSIYKVFDLKNYTML----YSISDKHVQEIKIRS----------SSHVPLKILSIEDG--TVLKVF-YHLLHR 262 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l----~tl~~~~V~~Vafs~----------s~d~tIklWdi~tG--~~l~tl-~~~~~~ 262 (464)
+|||+|+|+.|-||.-.+|+-- ++.+...|.+|+|.| ++|++|.|++..+- -+-..+ .-|.-.
T Consensus 72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 9999999999999999888642 344567899999977 58999999988642 233322 233355
Q ss_pred eeeEEEEccC-C------------CeEEEEeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcCCC----cEEEEEe-
Q 012410 263 NKKVDFIEQF-N------------EKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYEN----QLFLTFR- 322 (464)
Q Consensus 263 ~~~V~F~~~~-~------------~~lla~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~Fspdg----qllaS~s- 322 (464)
+.+|.+.|.. + .++++|+.|.+||||+..+++- -++|++|+++|+.||+.|.- .+|||+|
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 6899988753 1 2577889999999999888753 34799999999999999875 4699999
Q ss_pred CCeEEEEeCC--Cc-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 323 NRTVAVWNFR--GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 323 D~TIklWd~~--Ge-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
||+|-||..+ ++ -..||..- - .+.+|.+.||+.|.+|+-++. |..|.||-
T Consensus 232 Dg~viIwt~~~e~e~wk~tll~~-f---~~~~w~vSWS~sGn~LaVs~G-----------dNkvtlwk 284 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEPWKKTLLEE-F---PDVVWRVSWSLSGNILAVSGG-----------DNKVTLWK 284 (299)
T ss_pred CCcEEEEEecCccCccccccccc-C---CcceEEEEEeccccEEEEecC-----------CcEEEEEE
Confidence 9999999874 22 22222211 1 133899999999999998775 99999996
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=6.1e-17 Score=160.96 Aligned_cols=251 Identities=14% Similarity=0.156 Sum_probs=177.6
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce---EEEEeCC-C
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG---FVEFDDV-N 197 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~---~VaFs~p-d 197 (464)
..+.-+|.++|.+|.|.+-|+-+|+ ++-| ++++|||...+.-+ .. .+.+...|-+ .|.+-+| -
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAt----CSsD------q~vkI~d~~~~s~~--W~-~Ts~Wrah~~Si~rV~WAhPEf 72 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMAT----CSSD------QTVKIWDSTSDSGT--WS-CTSSWRAHDGSIWRVVWAHPEF 72 (361)
T ss_pred cccccCCcceeeeeeecccCceeee----ccCC------CcEEEEeccCCCCc--eE-EeeeEEecCCcEEEEEecCccc
Confidence 3556779999999999999999999 6667 89999997433321 11 1111222222 4555444 4
Q ss_pred CcEEEEecCCCcEEEEeCC--C----C-e--EEEEecC--CCEeEEEEeC----------CCceeEEEEEcCCCcEEE--
Q 012410 198 GKVLTYSAQDSIYKVFDLK--N----Y-T--MLYSISD--KHVQEIKIRS----------SSHVPLKILSIEDGTVLK-- 254 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~--t----g-~--~l~tl~~--~~V~~Vafs~----------s~d~tIklWdi~tG~~l~-- 254 (464)
||++|++|.|+|++||.=. + | + ...+|.+ ..|.+|.|.| +.|++|||++..+=--|.
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 9999999999999999741 1 1 1 2345654 5699999987 589999999765422222
Q ss_pred EEee-----------CCcceeeEEEEccC-CC-eEEEEeCC-----CeEEEEECCC-C-cEE--EEcccCCCceEEEEEc
Q 012410 255 VFYH-----------LLHRNKKVDFIEQF-NE-KLLVKQEN-----ENLQILDVRN-A-ELM--EVSRTEFMTPSAFIFL 312 (464)
Q Consensus 255 tl~~-----------~~~~~~~V~F~~~~-~~-~lla~s~D-----~tIkIWDv~t-g-~~l--~~l~gh~~~v~sv~Fs 312 (464)
+|.| +..+..+|.+.+-- .+ .|++|+.+ +.++||.-.. + +++ ..|.+|+..|++++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 2221 22344778876532 23 44555533 4888996433 3 343 4788999999999999
Q ss_pred CC----CcEEEEEe-CCeEEEEeCCC---------------------ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 313 YE----NQLFLTFR-NRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 313 pd----gqllaS~s-D~TIklWd~~G---------------------e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
|. -++||+++ || |+||++.+ +.+..|.+|... ||.+.|.=-|.+|+|.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~-----VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE-----VWRVRWNMTGTILSST 306 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc-----eEEEEEeeeeeEEeec
Confidence 85 57899999 99 99999764 235678899876 9999999999999998
Q ss_pred ecCCCccccccCCCCeEEEEeCC---CCeEEEEEccCCC
Q 012410 367 CKAEPEDQWMEGSAGSINVSSIL---TGKCLAKINATNC 402 (464)
Q Consensus 367 s~~~~~~~~~~s~DgtIklWdi~---tG~cl~tl~gh~~ 402 (464)
+. ||+||||... .-+|+..+++...
T Consensus 307 Gd-----------DG~VRLWkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 307 GD-----------DGCVRLWKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred CC-----------CceeeehhhhhhhhheeeeEEeccCC
Confidence 86 9999999632 3579988877553
No 138
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=3.4e-17 Score=163.14 Aligned_cols=234 Identities=12% Similarity=0.175 Sum_probs=189.1
Q ss_pred cchhhhccccceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCC--EEEEEEeecCCCCcc
Q 012410 80 FVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND--SLITVSVYASDNFSS 157 (464)
Q Consensus 80 ~~l~~l~~~s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~--~l~svSa~~sddfs~ 157 (464)
.+..+---..++..+...|-++|..+.|-+|++||+...+.+..| ..|..-|.++-|.++-. -|++ +++|
T Consensus 35 ~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS----~sdD--- 106 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLS----GSDD--- 106 (362)
T ss_pred ccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheee----ecCC---
Confidence 333343333556666666999999999999999999999999999 77999999999999875 6777 6788
Q ss_pred cceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC
Q 012410 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS 236 (464)
Q Consensus 158 L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~ 236 (464)
+.|-+|++..=.+..+++.|.. .+..++.. |.||+-.|-+.|+++++|||-+|.--+.+. .+.-..|.|+|
T Consensus 107 ---G~i~iw~~~~W~~~~slK~H~~----~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~ 178 (362)
T KOG0294|consen 107 ---GHIIIWRVGSWELLKSLKAHKG----QVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP 178 (362)
T ss_pred ---CcEEEEEcCCeEEeeeeccccc----ccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC
Confidence 8999999865555555665553 35589995 999999999999999999999998765554 33334499999
Q ss_pred CCc-------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEE
Q 012410 237 SSH-------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 309 (464)
Q Consensus 237 s~d-------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv 309 (464)
.+| .-|-||.+++-.+...+... .+.-++-|.. ++.|++|.+|++|++||-.++.++..+.+|...|-++
T Consensus 179 ~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 179 QGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFLD--GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred CCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeecC--CceEEEecCCceEEEeccCCCccceeeecchhheeee
Confidence 766 35789999988777776643 4456666654 4899999999999999988899999999999999999
Q ss_pred EEc--CCCcEEEEEe-CCeEEEEeCC
Q 012410 310 IFL--YENQLFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 310 ~Fs--pdgqllaS~s-D~TIklWd~~ 332 (464)
.|- |++.+|+|+| ||.|++||++
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEcc
Confidence 843 8899999999 9999999984
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=168.61 Aligned_cols=201 Identities=16% Similarity=0.227 Sum_probs=162.4
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
+..+.|+=|.-|.|+|||+. ..|+.++.... .+++ ..-+.+.++++|...=+.++|+|.--+.|
T Consensus 164 ~~~~~aswse~G~V~Vw~l~--~~l~~l~~~~~-~~~~-------------s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLA--PHLNALSEPGL-EVKD-------------SEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred CcceeeeecccCcEEEEEch--hhhhhhcCccc-cccc-------------cccCceEEecccCccceeeeccccccccc
Confidence 66788888999999999974 45555542111 0111 12456777886655559999999656888
Q ss_pred EEEeCCCeEEEEECCCCcEEE---EcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCC-C---ceEEEeccCCCCcC
Q 012410 277 LVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHP 347 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~---~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~-G---e~l~tl~gH~~~~~ 347 (464)
|+|---+.|++|.+.+|.-.- -+.+|+..|..+.+|| +..+|||+| |++|+|||++ | -|+.+ +.|..-
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD-- 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD-- 304 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc--
Confidence 988878999999999988653 4678999999999997 567899999 9999999995 7 46666 788775
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC---CeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t---G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
||-|.|+.+-.+||||++ |||++|||+.+ |+.+++++-|..
T Consensus 305 ---VNVISWnr~~~lLasG~D-----------dGt~~iwDLR~~~~~~pVA~fk~Hk~---------------------- 348 (440)
T KOG0302|consen 305 ---VNVISWNRREPLLASGGD-----------DGTLSIWDLRQFKSGQPVATFKYHKA---------------------- 348 (440)
T ss_pred ---eeeEEccCCcceeeecCC-----------CceEEEEEhhhccCCCcceeEEeccC----------------------
Confidence 899999999999999987 99999999864 888999999986
Q ss_pred ccccccccccccCEEEEEEcCC-CCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspD-g~~LaSgs~DgtVrlWd~ 464 (464)
.|++|.|+|. ...|+.++.|..|.|||+
T Consensus 349 ------------pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 349 ------------PITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred ------------CeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 9999999984 567889999999999995
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3e-16 Score=172.34 Aligned_cols=262 Identities=11% Similarity=0.097 Sum_probs=192.0
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC-CCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G-~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.|..--..|.|-|+|+.|.+++ -| +.|++|+...- +--.+....+ + -+-+++- ++..|++|+
T Consensus 11 aht~G~t~i~~d~~gefi~tcg----sd------g~ir~~~~~sd~e~P~ti~~~g-~---~v~~ia~---~s~~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCG----SD------GDIRKWKTNSDEEEPETIDISG-E---LVSSIAC---YSNHFLTGS 73 (933)
T ss_pred hccCceEEEEEcCCCCEEEEec----CC------CceEEeecCCcccCCchhhccC-c---eeEEEee---cccceEEee
Confidence 3666678899999999888843 34 57888875322 1101111111 1 1113333 455888999
Q ss_pred CCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 206 QDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
.|+||.++...+++.--.|. +-.++.++|+. ++|..||+.+..++...++|++|..+|..|.|.|. ++.
T Consensus 74 ~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~-~~f 152 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK-GNF 152 (933)
T ss_pred ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC-CCE
Confidence 99999999988776421111 34578888864 58899999999999999999988899999999995 456
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCC--------CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCC
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEF--------MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW 345 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~--------~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~ 345 (464)
|++.+-||+|+|||+++|.|.+++.+-. ..+.-++|+|+|-.||... |++|++++. .++....|.+...-
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s 232 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS 232 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc
Confidence 6667899999999999999998876631 2345678999966666666 999999998 68888888865543
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
..+..+.|||.|+|||++.. ||.|-|||+.| ..-|.
T Consensus 233 ---s~~~~~~wsPnG~YiAAs~~-----------~g~I~vWnv~t------~~~~~------------------------ 268 (933)
T KOG1274|consen 233 ---SKFSDLQWSPNGKYIAASTL-----------DGQILVWNVDT------HERHE------------------------ 268 (933)
T ss_pred ---cceEEEEEcCCCcEEeeecc-----------CCcEEEEeccc------chhcc------------------------
Confidence 12678999999999999988 99999999987 11132
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
..+.|.+++|-|+++-|----.-|+
T Consensus 269 --------~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 269 --------FKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred --------ccceeEEEecCCCCCeeEEEeeccc
Confidence 1237889999999886654433333
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=1.8e-17 Score=176.41 Aligned_cols=294 Identities=13% Similarity=0.099 Sum_probs=189.6
Q ss_pred cceeehhccCCeEEeeeccccc------EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 98 RDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~------~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
..+|+...++|-+.+||+..-+ .+..+ ..|...|..+.+-| |+.+.+ + ++.| +|+++||++++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wap-ge~~lV-s--asGD------sT~r~Wdvk~s 132 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAP-GESLLV-S--ASGD------STIRPWDVKTS 132 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCC-CceeEE-E--ccCC------ceeeeeeeccc
Confidence 3688889999999999865433 24566 67999999999999 766554 2 3345 89999999999
Q ss_pred CCCCc--ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-CCeEEEEecCCCEeEE---EEeCC--CceeEE
Q 012410 172 KPDSG--FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKHVQEI---KIRSS--SHVPLK 243 (464)
Q Consensus 172 ~~~~~--~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-tg~~l~tl~~~~V~~V---afs~s--~d~tIk 243 (464)
++.++ +.+|+ +.+-+++|.+-|--++++|+.|+.|+|||+. ++.-....-+..+..- +-.|+ .-.-++
T Consensus 133 ~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 133 RLVGGRLNLGHT----GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eeecceeecccc----cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 99887 33333 3333899987777889999999999999986 2210000001000000 00011 001122
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEE------E--cccC---CCceEEEEE
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME------V--SRTE---FMTPSAFIF 311 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~------~--l~gh---~~~v~sv~F 311 (464)
=|-...+. +. ..|..|.| - |+..|+++| .|++||+||++...+.- . +..| +..+..++.
T Consensus 209 k~kA~s~t----i~---ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 209 KWKAASNT----IF---SSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred ccccccCc----ee---eeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 22222221 11 12344555 2 456677766 59999999999876542 2 2223 223445544
Q ss_pred cCCCcEEEEEe-CCeEEEEeCCCc---eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 312 LYENQLFLTFR-NRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~~Ge---~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
---|.+|...+ |++|-.||+.+. .+..+.||..--- .| .-..|||+.+|+||+. |.-+.+|.
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf--~v-ks~lSpd~~~l~SgSs-----------d~~ayiw~ 345 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSF--YV-KSELSPDDCSLLSGSS-----------DEQAYIWV 345 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCcCchhhccCccccee--ee-eeecCCCCceEeccCC-----------Ccceeeee
Confidence 44455554444 999999998433 5667777765311 12 2346999999999986 99999999
Q ss_pred CCCCe-EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC--CCCEEEEeeCCCcEEeccC
Q 012410 388 ILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE--ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 388 i~tG~-cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp--Dg~~LaSgs~DgtVrlWd~ 464 (464)
+.+-+ -...+.||+- .|++|.+.| ++. +|++|+|-++++|+.
T Consensus 346 vs~~e~~~~~l~Ght~----------------------------------eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 346 VSSPEAPPALLLGHTR----------------------------------EVTTVRWLPSATTP-VATCSDDFRVKIWRL 390 (720)
T ss_pred ecCccCChhhhhCcce----------------------------------EEEEEeeccccCCC-ceeeccCcceEEEec
Confidence 87643 3567778875 789988865 555 455599999999974
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.7e-16 Score=157.58 Aligned_cols=231 Identities=12% Similarity=0.167 Sum_probs=175.3
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
+.+|.|+ |.+..|+-+|+|++++|+|+..-+++..+. +..+.+.+|-+ +-|+.|+..|+.+|+..+..+|.
T Consensus 16 IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~ 94 (323)
T KOG1036|consen 16 ISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHD 94 (323)
T ss_pred eeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCC
Confidence 3389998 677777778899999999998877766665 67899999954 58899999999999988877765
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceE
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELV 336 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l 336 (464)
..+.+|.+++ ..+.+++||.|++||+||.++..+..++... ..|.+. +--|..|+.|. |+.|-+||++ .+..
T Consensus 95 -~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 95 -EGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred -CceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccC-ceEEEE--eccCCEEEEeecCceEEEEEcccccchh
Confidence 7889999987 3578999999999999999986555555433 245544 44566667766 9999999983 4444
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE----EEEEccCCCCCCcccccCC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC----LAKINATNCSPKVDDELGS 412 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c----l~tl~gh~~~~~~~~~~~~ 412 (464)
+.-+--... + +++|++-|++.=.|++|- ||.|-+=.+.+.+| -..|+.|...-+..
T Consensus 170 q~reS~lky-q---tR~v~~~pn~eGy~~sSi-----------eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----- 229 (323)
T KOG1036|consen 170 QRRESSLKY-Q---TRCVALVPNGEGYVVSSI-----------EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----- 229 (323)
T ss_pred hhcccccee-E---EEEEEEecCCCceEEEee-----------cceEEEEccCCchHHhhhceeEEeeecccCCc-----
Confidence 322222222 2 899999999888888887 89888877666633 34677886411111
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+-.-+|.+++|+|=-+++|||+.||.|-+||.
T Consensus 230 --------------------~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 230 --------------------EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred --------------------eEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 11228999999999999999999999999984
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=1.2e-16 Score=159.71 Aligned_cols=270 Identities=10% Similarity=0.140 Sum_probs=201.2
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc--ccc-eeec-cccCce------E-----EE
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FAL-FESE-SLKWPG------F-----VE 192 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~--~~l-~~~~-~~~~~~------~-----Va 192 (464)
+.+...+.-+||||.-|.+-| .| ....+|.++.--.... .++ +... .+..+. . ..
T Consensus 48 p~nf~kgckWSPDGSciL~~s----ed------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~ 117 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLS----ED------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMK 117 (406)
T ss_pred chhhhccceeCCCCceEEeec----cc------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccc
Confidence 334456678999999888733 44 5777888743222111 111 1100 111111 1 22
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC----C---CEeEEEEeCCC-------ceeEEEEEc-CCCcEE---E
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K---HVQEIKIRSSS-------HVPLKILSI-EDGTVL---K 254 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~----~---~V~~Vafs~s~-------d~tIklWdi-~tG~~l---~ 254 (464)
-..|+-.+.|+++.|.-|++||.-||++..+.+. + .-.+++|+|+. -.+||++|+ ..|.-- .
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchh
Confidence 2358888999999999999999999999877762 1 35689999963 358999999 556422 2
Q ss_pred EEee----CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEE
Q 012410 255 VFYH----LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAV 328 (464)
Q Consensus 255 tl~~----~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIkl 328 (464)
|+.+ ...-+..++|+|-+...+++++...++=|+.-..+..+.++-||...|+-+.|.+||+.|.||+ |-.|-.
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence 3322 2345588999997666777799999999999888999999999999999999999999999998 999999
Q ss_pred EeCC--CceEEEeccCCCCcCCCCeeEEEE--CCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCC
Q 012410 329 WNFR--GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCS 403 (464)
Q Consensus 329 Wd~~--Ge~l~tl~gH~~~~~~~~v~svaf--SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~ 403 (464)
||++ ++.|..|++|..- .| .-|.| -|+|++||||+. ||.|++||+.+ |.-+..+..|+.
T Consensus 278 WDiR~~~~pv~~L~rhv~~---TN-QRI~FDld~~~~~LasG~t-----------dG~V~vwdlk~~gn~~sv~~~~sd- 341 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGD---TN-QRILFDLDPKGEILASGDT-----------DGSVRVWDLKDLGNEVSVTGNYSD- 341 (406)
T ss_pred EeehhccchhhhhhhhccC---cc-ceEEEecCCCCceeeccCC-----------CccEEEEecCCCCCcccccccccc-
Confidence 9993 9999999999652 11 23555 689999999986 99999999988 887777777775
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
-|..|+++|-=+++|++|-.
T Consensus 342 ---------------------------------~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 342 ---------------------------------TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ---------------------------------cccceecCcccceeeeccCc
Confidence 78889999998888888753
No 144
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.3e-16 Score=156.00 Aligned_cols=288 Identities=16% Similarity=0.172 Sum_probs=186.8
Q ss_pred ccccEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccce-eeEEEEEeccCCCC------CcccceeeccccC
Q 012410 116 ETNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKC-RSTKIEYIRRGKPD------SGFALFESESLKW 187 (464)
Q Consensus 116 ~~g~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~-~ti~l~~i~~G~~~------~~~~l~~~~~~~~ 187 (464)
+.+..++..=+.|..-||.++-+|..+ +|++ .| .+++++++ ..+-||.|+.-.-. .....+..+.++-
T Consensus 50 e~s~l~skvf~h~agEvw~las~P~d~~ilaT--~y--n~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~ 125 (370)
T KOG1007|consen 50 EGSELLSKVFFHHAGEVWDLASSPFDQRILAT--VY--NDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGK 125 (370)
T ss_pred ccchhhhhhhhcCCcceehhhcCCCCCceEEE--EE--eccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCc
Confidence 566666655477888899999999765 4555 33 34556655 56778998432211 1112222345566
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
+..|+|- ||++.||+=. |..|-||++..+.. .|.+|+.+.+..++ +.-.+=+
T Consensus 126 i~cvew~-Pns~klasm~-dn~i~l~~l~ess~-------~vaev~ss~s~e~~-------------------~~ftsg~ 177 (370)
T KOG1007|consen 126 INCVEWE-PNSDKLASMD-DNNIVLWSLDESSK-------IVAEVLSSESAEMR-------------------HSFTSGA 177 (370)
T ss_pred eeeEEEc-CCCCeeEEec-cCceEEEEcccCcc-------hheeeccccccccc-------------------ceecccc
Confidence 6799995 8999999765 88999999987653 24555555442211 2223345
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcE-EEEEe-CCeEEEEeC--CCceEEEeccC
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNF--RGELVTSFEDH 342 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~Fspdgql-laS~s-D~TIklWd~--~Ge~l~tl~gH 342 (464)
++|..++..++.-.|+|++-||++|-.+... -..|.+.|+.+.|+|+.|. |||++ |+-|||||. +-..+++|.+|
T Consensus 178 WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H 257 (370)
T KOG1007|consen 178 WSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH 257 (370)
T ss_pred cCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC
Confidence 6675566667767789999999999877654 4578889999999999996 55566 999999998 37799999999
Q ss_pred CCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc-cCCCCCCcccccCCCCCCcccc
Q 012410 343 LLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN-ATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 343 ~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~-gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
..| ||+|-|.|- .++|.||+. |..|.||...+--.-..+. +|..+-.+...+.-. +
T Consensus 258 sHW-----vW~VRfn~~hdqLiLs~~S-----------Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer-~----- 315 (370)
T KOG1007|consen 258 SHW-----VWAVRFNPEHDQLILSGGS-----------DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER-V----- 315 (370)
T ss_pred ceE-----EEEEEecCccceEEEecCC-----------CceeEEEeccccccccccccccccccCcchhhHHh-c-----
Confidence 999 999999995 567777764 9999999753311111111 121100000000000 0
Q ss_pred ccccccccc----cccccccCEEEEEEcCCCC-EEEEeeCCCcEEe
Q 012410 421 LNKSSYIRS----TVGEALEDITSLFYDEERN-EIYTGNRHGLVHV 461 (464)
Q Consensus 421 ~~~~~~~~~----~~~~~l~~V~slafspDg~-~LaSgs~DgtVrl 461 (464)
. -+.. +-.+.=..|.+++||.-.. +.||=|-||-|-|
T Consensus 316 ---k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 316 ---K-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ---c-cccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 0 0000 1112233899999986554 6788899997744
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.74 E-value=1.4e-16 Score=164.59 Aligned_cols=282 Identities=14% Similarity=0.147 Sum_probs=199.6
Q ss_pred cCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCC-CCcccceeeccccCceEEEEeCCCCcEEEE
Q 012410 126 VSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-~~~~~l~~~~~~~~~~~VaFs~pdGk~LaS 203 (464)
..+...|.+++|.|--. .|+.|+ .- +++|-+|++.+.+. ..++.+|+. +-+.+..+.|++.|-..+.|
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~G---dK------~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVG---DK------GGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred EecccceEEEEecccCcceEEEEc---cC------CCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheee
Confidence 45778899999999755 454433 22 37999999964444 335666663 44456789999777778888
Q ss_pred ecCCCcEEEEeCCCCeE--EEEecC--CCEeEEEEeCC--------CceeEEEEEcCCCcE-EEEEeeCCcceeeEEEEc
Q 012410 204 SAQDSIYKVFDLKNYTM--LYSISD--KHVQEIKIRSS--------SHVPLKILSIEDGTV-LKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 204 gs~D~tiKlWdl~tg~~--l~tl~~--~~V~~Vafs~s--------~d~tIklWdi~tG~~-l~tl~~~~~~~~~V~F~~ 270 (464)
+|.|||||+=|++++.. ++++.+ .+..+..|+.+ .-+-.-+||..++.- ..-+.-|...|.+|++.|
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 99999999999998764 456643 34556666542 334678899886544 444443335889999999
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEE----EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--C--ceEEEecc
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELM----EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G--ELVTSFED 341 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l----~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--G--e~l~tl~g 341 (464)
.....||++|.|+|.||||+++-.-. -....|...|.|+-|||.|-.|+|.+ |.+|+|||.. + -+....--
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 88888888999999999999884322 23346888999999999999999999 9999999972 1 12222222
Q ss_pred CCC----CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 342 HLL----WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 342 H~~----~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
|.+ |.. ..-.+|.||-.+|++|-. -.-|-|.|-..||.+..|.+-..
T Consensus 413 Hn~~t~RwlT---~fKA~W~P~~~li~vg~~-----------~r~IDv~~~~~~q~v~el~~P~~--------------- 463 (498)
T KOG4328|consen 413 HNNRTGRWLT---PFKAAWDPDYNLIVVGRY-----------PRPIDVFDGNGGQMVCELHDPES--------------- 463 (498)
T ss_pred ccCccccccc---chhheeCCCccEEEEecc-----------CcceeEEcCCCCEEeeeccCccc---------------
Confidence 333 321 345789999999999977 34599999877886766633221
Q ss_pred cccccccccccccccccccCEEE-EEEcCCCCEEEEe-eCCCcEEeccC
Q 012410 418 SKKLNKSSYIRSTVGEALEDITS-LFYDEERNEIYTG-NRHGLVHVWSN 464 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~s-lafspDg~~LaSg-s~DgtVrlWd~ 464 (464)
..|.+ ..|+|-+..|++| +.-|.|.||-+
T Consensus 464 ------------------~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 464 ------------------STIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ------------------cccccceeecccccceeccCCccceEEEEec
Confidence 02333 5899999955554 57899999964
No 146
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.74 E-value=3.6e-15 Score=155.71 Aligned_cols=300 Identities=14% Similarity=0.153 Sum_probs=219.6
Q ss_pred ceEEEEec----cceeehhccCC--eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeE
Q 012410 90 KVIEIVAA----RDIVFALAHSG--VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 90 ~v~~~~~a----g~~l~~l~~~g--~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti 163 (464)
.|.-+.|+ |++|.+.+.+. +..+||-..+..+-.+ ...+|.|--..|.|-+.-|+. .++. ..+
T Consensus 156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v-k~sne~v~~a~FHPtd~nlii--t~Gk--------~H~ 224 (626)
T KOG2106|consen 156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV-KTSNEVVFLATFHPTDPNLII--TCGK--------GHL 224 (626)
T ss_pred cceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc-eeccceEEEEEeccCCCcEEE--EeCC--------ceE
Confidence 34444444 77777766554 7888886777777777 446788999999999888888 4443 468
Q ss_pred EEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEE-------
Q 012410 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKI------- 234 (464)
Q Consensus 164 ~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vaf------- 234 (464)
..|+.+.|-+...+.+|+...-+++-+|+|. +||++++ |..+++|-||+..+.+..+..+ ++.|.++..
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-engdviT-gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll 302 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENGDVIT-GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL 302 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEc-CCCCEEe-ecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe
Confidence 8999999988887778875434777899997 8998875 8999999999987777665544 677888776
Q ss_pred eCCCceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEc
Q 012410 235 RSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 235 s~s~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs 312 (464)
|...|..|-+|| .+=+.++..+ ..-+.++.|+ |..++ |++|-.-++|--=.++++--+ +..||.+..|.++-.
T Consensus 303 SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~--e~~~d-i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~h 377 (626)
T KOG2106|consen 303 SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA--EGKGD-ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATH 377 (626)
T ss_pred ecCccceEEecc-ccccccccccCchhcCCeeEEe--cCCCc-EEEeeccceEEEeeecCCceE-EEEecccceeeEEcC
Confidence 456889999999 3333333222 2235566666 43334 777654455544344444433 446788999999999
Q ss_pred CCCcEEEEEe-CCeEEEEeCCCceE--EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 313 YENQLFLTFR-NRTVAVWNFRGELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 313 pdgqllaS~s-D~TIklWd~~Ge~l--~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|+..+|+|++ |++++||| .-+++ +.+++- +.++.|.|-| .||-|.. .|---+-|++
T Consensus 378 ps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~--------~~~~~fhpsg-~va~Gt~-----------~G~w~V~d~e 436 (626)
T KOG2106|consen 378 PSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDP--------AECADFHPSG-VVAVGTA-----------TGRWFVLDTE 436 (626)
T ss_pred CChhheeeccCcceEEEcc-CCceeEEEEecCc--------eeEeeccCcc-eEEEeec-----------cceEEEEecc
Confidence 9999999999 99999999 43332 223222 5689999999 8898886 7888888998
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|...+ +++-.+. +++.|+|||||..||-||.|+.|.|+.
T Consensus 437 ~~~lv-~~~~d~~----------------------------------~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 437 TQDLV-TIHTDNE----------------------------------QLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred cceeE-EEEecCC----------------------------------ceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 84443 3433332 899999999999999999999999863
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=1.4e-16 Score=157.89 Aligned_cols=191 Identities=10% Similarity=0.132 Sum_probs=149.3
Q ss_pred eCCCceeEEEEEcCCCc-------EEEEEe-----e---CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc
Q 012410 235 RSSSHVPLKILSIEDGT-------VLKVFY-----H---LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 299 (464)
Q Consensus 235 s~s~d~tIklWdi~tG~-------~l~tl~-----~---~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l 299 (464)
|...|+.|-+||+++-. ..+... | |--.+.++.|-|.+.|.+.++|.|+|+|+||..|-|..-++
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F 140 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF 140 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence 44688899999998644 223222 1 22234788888988898888999999999999999888777
Q ss_pred ccCCCceEEEEEcCCCc---EEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE-EEEEecCCCcc
Q 012410 300 RTEFMTPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPED 373 (464)
Q Consensus 300 ~gh~~~v~sv~Fspdgq---llaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~-LaSgs~~~~~~ 373 (464)
+=+ +.|++-+.||=.- ++|+|- |-.|+|.|+ .|.|-++|.||..- |-+|.+||-..+ ||+||.
T Consensus 141 ~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~-----vlaV~Wsp~~e~vLatgsa----- 209 (397)
T KOG4283|consen 141 KME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG-----VLAVEWSPSSEWVLATGSA----- 209 (397)
T ss_pred ecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc-----eEEEEeccCceeEEEecCC-----
Confidence 654 4677777777543 677777 889999999 79999999999987 899999998776 466654
Q ss_pred ccccCCCCeEEEEeCCCC-eEEEEEccCCC--CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 012410 374 QWMEGSAGSINVSSILTG-KCLAKINATNC--SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 450 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG-~cl~tl~gh~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L 450 (464)
||+||+|||.-- -|+++|.-|+. +|... +-...-..|.++||+.||..|
T Consensus 210 ------Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~----------------------~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 210 ------DGAIRLWDIRRASGCFRVLDQHNTKRPPILK----------------------TNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred ------CceEEEEEeecccceeEEeecccCccCcccc----------------------ccccccceeeeeeecccchhh
Confidence 999999999876 89999999984 11111 111222389999999999999
Q ss_pred EEeeCCCcEEeccC
Q 012410 451 YTGNRHGLVHVWSN 464 (464)
Q Consensus 451 aSgs~DgtVrlWd~ 464 (464)
++.+.|..+|+|+.
T Consensus 262 ~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNM 275 (397)
T ss_pred hhccCccceEEeec
Confidence 99999999999974
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.1e-17 Score=180.85 Aligned_cols=179 Identities=13% Similarity=0.202 Sum_probs=150.0
Q ss_pred CCceeEEEEEcCC---CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 237 SSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 237 s~d~tIklWdi~t---G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
+.-+.|-+||+.- .+.+..|+.|...+.+++|++.....|++||.|++||+||++...-..++.+....|+.|.|+|
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 4556789999976 5666778877678899999997677888899999999999999999999999999999999996
Q ss_pred -CCcEEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 314 -ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 314 -dgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
++..|+++. .|++++||++ -+|...|..|... |..+-++|++.+||+|+. |++|||||..
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp-----V~c~nwhPnr~~lATGGR-----------DK~vkiWd~t 250 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP-----VLCLNWHPNREWLATGGR-----------DKMVKIWDMT 250 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----eEEEeecCCCceeeecCC-----------CccEEEEecc
Confidence 678899999 9999999994 8899999999998 788889999999999986 9999999986
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEee--CCCcEEeccC
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN--RHGLVHVWSN 464 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs--~DgtVrlWd~ 464 (464)
+++.-..+.-|+. ..|..|.|-|+.+ .|||.| .|-.|+|||.
T Consensus 251 ~~~~~~~~tInTi---------------------------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 251 DSRAKPKHTINTI---------------------------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred CCCccceeEEeec---------------------------------ceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 5543222222221 2788999999987 477776 5888999984
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.4e-16 Score=164.15 Aligned_cols=230 Identities=15% Similarity=0.159 Sum_probs=158.2
Q ss_pred CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC----------------cccceeeccccCce---EEEEeCCCCcE
Q 012410 140 NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS----------------GFALFESESLKWPG---FVEFDDVNGKV 200 (464)
Q Consensus 140 ~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~----------------~~~l~~~~~~~~~~---~VaFs~pdGk~ 200 (464)
-|+++|+ |..+ ..|.|||+.--.... +.+.+. ..+|.. +++++--.-.+
T Consensus 191 ~gNyvAi----Gtmd------p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~--~~gHTdavl~Ls~n~~~~nV 258 (463)
T KOG0270|consen 191 AGNYVAI----GTMD------PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNS--ASGHTDAVLALSWNRNFRNV 258 (463)
T ss_pred CcceEEE----eccC------ceeEEeccccccccccceeechhhhhhhhhhcccccc--cccchHHHHHHHhcccccee
Confidence 3667877 7777 899999873222110 001111 124553 45554334468
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEE-EEEeeCCcceeeEEE
Q 012410 201 LTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVL-KVFYHLLHRNKKVDF 268 (464)
Q Consensus 201 LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l-~tl~~~~~~~~~V~F 268 (464)
|||||.|+|||||||.+|+|-.++. ++.|++++|.| +.|++|+|-|...-.+. +.++. ...+-+|++
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEkv~w 337 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEKVAW 337 (463)
T ss_pred EEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEEEEe
Confidence 9999999999999999999999887 67899999966 58999999998731111 22221 256788999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeCCCceEEEeccCCCC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFRGELVTSFEDHLLW 345 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~~Ge~l~tl~gH~~~ 345 (464)
.|.....++++..||+++=.|+|+ |+++-+++.|...|..+.+++.. .+++|++ |++||||++.+.--+.-..|..-
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 886556677788999999999998 59999999999999999988654 4677788 99999999853332222334332
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
... ..+.++-|+-..+.+.+ |..+-++|||+.++.-+
T Consensus 418 ~~r--l~c~~~~~~~a~~la~G----------G~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 LGR--LHCFALDPDVAFTLAFG----------GEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccc--eeecccCCCcceEEEec----------CccceEEEeecccChhH
Confidence 110 23445556544443332 23678999999776543
No 150
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=5.9e-16 Score=162.55 Aligned_cols=206 Identities=13% Similarity=0.057 Sum_probs=136.1
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC---cEEEEeCCCCeEEEEecCCCEeEEEEeCC
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSISDKHVQEIKIRSS 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~---tiKlWdl~tg~~l~tl~~~~V~~Vafs~s 237 (464)
..+.|||...+.. . .+.. +.....+++|| |||+.||+.+.+. +|.+||+.+|+..
T Consensus 184 ~~i~i~d~dg~~~-~--~lt~--~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~---------------- 241 (429)
T PRK01742 184 YEVRVADYDGFNQ-F--IVNR--SSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARK---------------- 241 (429)
T ss_pred EEEEEECCCCCCc-e--Eecc--CCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceE----------------
Confidence 6888888643332 1 1222 11233479997 8999999987542 4556665544321
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEE--ECCCCcEEEEcccCCCceEEEEEcCC
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIW--Dv~tg~~l~~l~gh~~~v~sv~Fspd 314 (464)
++..+. ..+..++|+| ++.+|+.++ .|+.++|| |+.++++.+ +.+|...+.+..|+||
T Consensus 242 --------------~l~~~~---g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 242 --------------VVASFR---GHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTSGAGNNTEPSWSPD 302 (429)
T ss_pred --------------EEecCC---CccCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeEe-eccCCCCcCCEEECCC
Confidence 122222 1234678888 466677654 68876665 777777654 4556666788999999
Q ss_pred CcEEEEEe--CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 315 NQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 315 gqllaS~s--D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|+.|+..+ ++.++||++ .|.....+ +|... +..|||||++|+..+. ++.+ +||+.+
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~~-------~~~~SpDG~~ia~~~~-----------~~i~-~~Dl~~ 362 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRGY-------SAQISADGKTLVMING-----------DNVV-KQDLTS 362 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCCC-------CccCCCCCCEEEEEcC-----------CCEE-EEECCC
Confidence 99877655 789999987 34444444 44321 3679999999998764 5544 599999
Q ss_pred CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 391 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 391 G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|++.....++ ...+++|+|||+.|+.++.++.+++|+
T Consensus 363 g~~~~lt~~~------------------------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 363 GSTEVLSSTF------------------------------------LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CCeEEecCCC------------------------------------CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 9875432222 224578999999999999999998885
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=1.3e-16 Score=159.60 Aligned_cols=226 Identities=14% Similarity=0.156 Sum_probs=171.6
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCC-------CeEE-E----Eec---CCCEeEEEE---------------eCCCc
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-------YTML-Y----SIS---DKHVQEIKI---------------RSSSH 239 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~t-------g~~l-~----tl~---~~~V~~Vaf---------------s~s~d 239 (464)
...+| |||..|.+-+.|.++.+|+|.. ...+ . +++ ...|.+-.+ ..+.|
T Consensus 54 gckWS-PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 54 GCKWS-PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred cceeC-CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 56676 9999999999999999999752 1111 1 111 344554444 12588
Q ss_pred eeEEEEEcCCCcEEEEEe--eCCcce---eeEEEEccCCCeEEEEeCCCeEEEEEC-CCCcEEE---Ec-c---cCCCce
Q 012410 240 VPLKILSIEDGTVLKVFY--HLLHRN---KKVDFIEQFNEKLLVKQENENLQILDV-RNAELME---VS-R---TEFMTP 306 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~--~~~~~~---~~V~F~~~~~~~lla~s~D~tIkIWDv-~tg~~l~---~l-~---gh~~~v 306 (464)
.||+|||.-||+.-.++. .|..++ .+++|+|+ +++ |.++...+||++|+ +.|.--. ++ . |...-+
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D-Geq-lfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD-GEQ-LFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCC-CCe-EeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 999999999999988876 333444 89999994 555 55567899999999 7776322 21 1 124567
Q ss_pred EEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 307 SAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 307 ~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
..++|+|-. .++|.++ -+++-|++- .++.+++|-||.+- |.-+.|.|||..|.||+.. |-.|
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG-----vThL~~~edGn~lfsGaRk----------~dkI 275 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG-----VTHLQWCEDGNKLFSGARK----------DDKI 275 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC-----eeeEEeccCcCeecccccC----------CCeE
Confidence 789999855 4999999 999999998 58899999999998 8899999999999999873 7889
Q ss_pred EEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 384 NVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 384 klWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
-.|||.. ++-+..|..|.. + .=+.|. ....|+|+.||||+.||.|++|
T Consensus 276 l~WDiR~~~~pv~~L~rhv~-----------~-------------------TNQRI~-FDld~~~~~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVG-----------D-------------------TNQRIL-FDLDPKGEILASGDTDGSVRVW 324 (406)
T ss_pred EEEeehhccchhhhhhhhcc-----------C-------------------ccceEE-EecCCCCceeeccCCCccEEEE
Confidence 9999964 667888888864 0 001332 4557999999999999999999
Q ss_pred cC
Q 012410 463 SN 464 (464)
Q Consensus 463 d~ 464 (464)
|+
T Consensus 325 dl 326 (406)
T KOG2919|consen 325 DL 326 (406)
T ss_pred ec
Confidence 96
No 152
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.6e-15 Score=159.69 Aligned_cols=247 Identities=14% Similarity=0.193 Sum_probs=158.3
Q ss_pred EEEEeccceeehhccCC-----eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 92 IEIVAARDIVFALAHSG-----VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~~g-----~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..++|...+.++....+ .+.++| .+|.....+.. +.+.+.+..|||||+.|+.+|. .+.+ ..+.++
T Consensus 158 ~~g~f~~riayv~~~~~~~~~~~l~~~d-~dg~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~-~~g~------~~i~i~ 228 (429)
T PRK03629 158 IKGAFRTRIAYVVQTNGGQFPYELRVSD-YDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTF-ESGR------SALVIQ 228 (429)
T ss_pred CCCccCCeEEEEEeeCCCCcceeEEEEc-CCCCCCEEeec-CCCceeeeEEcCCCCEEEEEEe-cCCC------cEEEEE
Confidence 35666677766665332 577777 45665666634 5667999999999999998762 2233 578999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. .+.. .-++...++|| |||+.|+..+. ++. ..|.+|
T Consensus 229 dl~~G~~~---~l~~--~~~~~~~~~~S-PDG~~La~~~~~~g~------------------------------~~I~~~ 272 (429)
T PRK03629 229 TLANGAVR---QVAS--FPRHNGAPAFS-PDGSKLAFALSKTGS------------------------------LNLYVM 272 (429)
T ss_pred ECCCCCeE---EccC--CCCCcCCeEEC-CCCCEEEEEEcCCCC------------------------------cEEEEE
Confidence 99888752 1222 12344578997 89999986532 221 123444
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEE--ECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIW--Dv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
|+++|++.+...+. ..+..+.|+| ++.+|+..+ .++..+|| |+.+|+..+. ..+........|||||+.|+..+
T Consensus 273 d~~tg~~~~lt~~~-~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 273 DLASGQIRQVTDGR-SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred ECCCCCEEEccCCC-CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEEEEE
Confidence 45444443322221 2346678888 456676666 34555555 7777776543 22333455788999999998765
Q ss_pred -C---CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 323 -N---RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 323 -D---~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
+ ..|.+||+ +|+ ++.|.... . ..+..|||||+.|+..+.. +....+.++++ +|+..+.|
T Consensus 350 ~~~g~~~I~~~dl~~g~-~~~Lt~~~-~-----~~~p~~SpDG~~i~~~s~~--------~~~~~l~~~~~-~G~~~~~l 413 (429)
T PRK03629 350 SNGGQQHIAKQDLATGG-VQVLTDTF-L-----DETPSIAPNGTMVIYSSSQ--------GMGSVLNLVST-DGRFKARL 413 (429)
T ss_pred ccCCCceEEEEECCCCC-eEEeCCCC-C-----CCCceECCCCCEEEEEEcC--------CCceEEEEEEC-CCCCeEEC
Confidence 3 35888999 465 44555321 1 3467899999999998751 11234788887 89989999
Q ss_pred ccCCC
Q 012410 398 NATNC 402 (464)
Q Consensus 398 ~gh~~ 402 (464)
.+|..
T Consensus 414 ~~~~~ 418 (429)
T PRK03629 414 PATDG 418 (429)
T ss_pred ccCCC
Confidence 88875
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=4e-16 Score=160.76 Aligned_cols=220 Identities=11% Similarity=0.167 Sum_probs=160.9
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEE---EEe--------------------c---------CCCEeEEEEeCCCceeEEE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTML---YSI--------------------S---------DKHVQEIKIRSSSHVPLKI 244 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l---~tl--------------------~---------~~~V~~Vafs~s~d~tIkl 244 (464)
-|.++|-|..|.+|.||||.=-..+ .+| + ......|-+|.+.|+||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4679999999999999997521111 111 1 1224566678899999999
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcE-EEEEe-
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFR- 322 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgql-laS~s- 322 (464)
||+.+|+|-.++.||...|.+++|.|..+..||+|+.|++++|.|.+.-.+...----...|..+++.|.... +.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 9999999999999988999999999987889999999999999999842221100001235777888776654 44455
Q ss_pred CCeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 323 NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 323 D~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
||+|+=.|.+ |+++.++..|... |..|.+++.-. +|+++|. |++||||++.--+ -+....
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~-----ISgl~~n~~~p~~l~t~s~-----------d~~Vklw~~~~~~-~~~v~~ 413 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDE-----ISGLSVNIQTPGLLSTAST-----------DKVVKLWKFDVDS-PKSVKE 413 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCC-----cceEEecCCCCcceeeccc-----------cceEEEEeecCCC-Cccccc
Confidence 9999999994 9999999999998 77888887654 5566554 9999999974221 111122
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
|. ..|....+.++.|+-- +||.|+..+.+||||+
T Consensus 414 ~~-------------------------------~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 414 HS-------------------------------FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cc-------------------------------ccccceeecccCCCcceEEEecCccceEEEeec
Confidence 22 1122566778888765 6888999999999985
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.9e-16 Score=166.75 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=143.6
Q ss_pred eCCCceeEEEEEcCC--------CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC------C----cEE
Q 012410 235 RSSSHVPLKILSIED--------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN------A----ELM 296 (464)
Q Consensus 235 s~s~d~tIklWdi~t--------G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t------g----~~l 296 (464)
+.+.|++||+|+++. =+.+.||..|-.+|-+|+..+ .++.+.+|+.|++|+.|++-. + .+.
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~ 389 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLS 389 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhc
Confidence 446889999999832 346778888889999999866 578999999999999994432 1 255
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEecc----------------------------------
Q 012410 297 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED---------------------------------- 341 (464)
Q Consensus 297 ~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~g---------------------------------- 341 (464)
.++.||++.||.+++|+..+.|++.| |+|+++|+.+++..-+|..
T Consensus 390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ 469 (577)
T KOG0642|consen 390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDM 469 (577)
T ss_pred cceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhh
Confidence 68899999999999999999999999 9999999975332222221
Q ss_pred -----------CCC--CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 342 -----------HLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 342 -----------H~~--~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
-.. ....+.++-|...|.+.+.+++- +|++||+.|..+|+.+....+|-.
T Consensus 470 ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h-----------ed~~Ir~~dn~~~~~l~s~~a~~~------ 532 (577)
T KOG0642|consen 470 EVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH-----------EDRSIRFFDNKTGKILHSMVAHKD------ 532 (577)
T ss_pred hhhhheeeccccCCCcccccCccceEEecCCCCeeEecc-----------cCCceecccccccccchheeeccc------
Confidence 000 00011245566677777776665 499999999999999998888875
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|+++|+.|+|-+|+||+.|+.|+||.+
T Consensus 533 ----------------------------svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 533 ----------------------------SVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ----------------------------eecceeecCCCceEEeecCCceeehhhc
Confidence 8999999999999999999999999975
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.70 E-value=3.9e-16 Score=162.61 Aligned_cols=249 Identities=13% Similarity=0.168 Sum_probs=185.5
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe---EE--EEecCC---CEeEE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---ML--YSISDK---HVQEI 232 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~---~l--~tl~~~---~V~~V 232 (464)
.+++|||...-.....+-.++.++ -..++.++.-|--+.|+.+.|+.|++|. +.|+ -- ..+... -|..+
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred CceEEeecccccCccccccCCCCC--cceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhh
Confidence 379999986544433333333221 1226777644445778889999999997 5555 11 111111 13333
Q ss_pred EE-----eCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-CCce
Q 012410 233 KI-----RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTP 306 (464)
Q Consensus 233 af-----s~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-~~~v 306 (464)
.+ +....++|||||+..--|.+.|.+|...|..|.+.- .+++|++.+..|-|-|-.+.|++.-.++..- .+.|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence 33 335678999999997778888998888999999977 3689999999999999999999987777654 4566
Q ss_pred EEEEEcCCCcEEEE-Ee-CCeEEEEeCCCc--eEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCC
Q 012410 307 SAFIFLYENQLFLT-FR-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 307 ~sv~FspdgqllaS-~s-D~TIklWd~~Ge--~l~tl~gH~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~Dg 381 (464)
+-+.|||-.+.+++ ++ ||+|.|||++|. ...-++.|..+ ...|+|||- ..+|||-+. |+
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP-----~~gicfspsne~l~vsVG~-----------Dk 231 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP-----CRGICFSPSNEALLVSVGY-----------DK 231 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC-----cCcceecCCccceEEEecc-----------cc
Confidence 78889998886655 66 999999999766 44567789887 568999995 567888877 99
Q ss_pred eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 382 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.|.++|+...+....|.... +..+|+|+|+|.+|+.|+..|.|-.
T Consensus 232 ki~~yD~~s~~s~~~l~y~~-----------------------------------Plstvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLTYSH-----------------------------------PLSTVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred eEEEeecccccccceeeecC-----------------------------------CcceeeecCCceEEEeecCCceEEE
Confidence 99999998776666663322 7889999999999999999999988
Q ss_pred ccC
Q 012410 462 WSN 464 (464)
Q Consensus 462 Wd~ 464 (464)
+|+
T Consensus 277 YD~ 279 (673)
T KOG4378|consen 277 YDM 279 (673)
T ss_pred Eec
Confidence 874
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.8e-16 Score=166.43 Aligned_cols=219 Identities=14% Similarity=0.205 Sum_probs=177.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------------------------------
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS------------------------------- 237 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s------------------------------- 237 (464)
++.-+ |-|..|||||.|||+|||.+.||.|++++. +..|++|+|+|.
T Consensus 405 ~iSvd-p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ 483 (733)
T KOG0650|consen 405 SISVD-PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTK 483 (733)
T ss_pred EEEec-CCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchh
Confidence 67775 799999999999999999999999999888 789999999763
Q ss_pred -----------CceeEEEEEcC------CCcEEEEEeeCCcceeeEEEEccCCCeEEEE---eCCCeEEEEECCCCcEEE
Q 012410 238 -----------SHVPLKILSIE------DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK---QENENLQILDVRNAELME 297 (464)
Q Consensus 238 -----------~d~tIklWdi~------tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~---s~D~tIkIWDv~tg~~l~ 297 (464)
.+..+-.|.-. -|-|+ ++.| -..+++|.+.. .|.+|++- +....|-|.++..+.-..
T Consensus 484 ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~-~I~~-~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~ 560 (733)
T KOG0650|consen 484 ELLASAPNESEPDAAVVTWSRASLDELEKGVCI-VIKH-PKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQS 560 (733)
T ss_pred hhhhcCCCccCCcccceeechhhhhhhccceEE-EEec-CCccceeeeec-CCceEEEeccCCCcceEEEEecccccccC
Confidence 22345567543 12122 2333 26778899887 46777763 366778888887766555
Q ss_pred EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 012410 298 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 376 (464)
Q Consensus 298 ~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~ 376 (464)
-|+--...|-.+.|.|-..+|..+.-+.|+|+|+ .+++++.|.--.-| |.+++++|.|+-|+.|+.
T Consensus 561 PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw-----iS~msihp~GDnli~gs~-------- 627 (733)
T KOG0650|consen 561 PFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW-----ISSMSIHPNGDNLILGSY-------- 627 (733)
T ss_pred chhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee-----eeeeeecCCCCeEEEecC--------
Confidence 5544445688999999999999999899999999 79999988888888 889999999999999987
Q ss_pred cCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 377 EGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 377 ~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
|+.+-..|+.- -+-.++|+-|.. .|++|+|++-=..+||||.
T Consensus 628 ---d~k~~WfDldlsskPyk~lr~H~~----------------------------------avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 628 ---DKKMCWFDLDLSSKPYKTLRLHEK----------------------------------AVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred ---CCeeEEEEcccCcchhHHhhhhhh----------------------------------hhhhhhhccccceeeeecC
Confidence 99998888754 367788888886 8999999999999999999
Q ss_pred CCcEEec
Q 012410 456 HGLVHVW 462 (464)
Q Consensus 456 DgtVrlW 462 (464)
||+|.|.
T Consensus 671 Dgtv~Vf 677 (733)
T KOG0650|consen 671 DGTVIVF 677 (733)
T ss_pred CCcEEEE
Confidence 9999886
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=1.8e-15 Score=151.69 Aligned_cols=220 Identities=13% Similarity=0.186 Sum_probs=164.1
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEe---eCCccee
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFY---HLLHRNK 264 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~---~~~~~~~ 264 (464)
-+||.|+.-|.|||-|+.+++|...+. +..|.+|+|.| +.|.+||||||+++.|+..|- +|-.+|-
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 478999999999999999999986654 67899999965 689999999999999999986 5667889
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE---E---cccC-CC--ceEEEEEcCC-----------------CcEE
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELME---V---SRTE-FM--TPSAFIFLYE-----------------NQLF 318 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~---~---l~gh-~~--~v~sv~Fspd-----------------gqll 318 (464)
+|+|+. ++++|++++.|.+|++|++...+-.+ . +... ++ .|+-..--|+ |.++
T Consensus 186 SvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~i 264 (385)
T KOG1034|consen 186 SVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFI 264 (385)
T ss_pred EEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhhe
Confidence 999999 57899999999999999998654221 1 1100 01 0111111122 7889
Q ss_pred EEEe-CCeEEEEeC-C----------CceEEEeccCCCCcCCCCeeEEEECC--CCCEEEEEecCCCccccccCCCCeEE
Q 012410 319 LTFR-NRTVAVWNF-R----------GELVTSFEDHLLWHPDCNTNNIYITS--DQDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 319 aS~s-D~TIklWd~-~----------Ge~l~tl~gH~~~~~~~~v~svafSp--Dg~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
+|=| ++.|-.|-. . ++.-.|.-++-. ++.|.+|-|-|+- =++.||.|.. -|+|.
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~~~la~gnq-----------~g~v~ 332 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQKMLALGNQ-----------SGKVY 332 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHHHHHhhccC-----------CCcEE
Confidence 9988 999999986 2 233334444544 4778888887654 5999999876 89999
Q ss_pred EEeCCCCeEE--EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 385 VSSILTGKCL--AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 385 lWdi~tG~cl--~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
+||+..-... .||.-+.. + ..|...+||.||.+|+-..+|++|--|
T Consensus 333 vwdL~~~ep~~~ttl~~s~~-----------~---------------------~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 333 VWDLDNNEPPKCTTLTHSKS-----------G---------------------STVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred EEECCCCCCccCceEEeccc-----------c---------------------ceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 9999765431 22211111 1 178889999999999999999999988
Q ss_pred c
Q 012410 463 S 463 (464)
Q Consensus 463 d 463 (464)
|
T Consensus 381 d 381 (385)
T KOG1034|consen 381 D 381 (385)
T ss_pred E
Confidence 7
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.7e-15 Score=160.66 Aligned_cols=290 Identities=13% Similarity=0.149 Sum_probs=207.2
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC-
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS- 175 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~- 175 (464)
.|+.||.++.+|++++|.+.||.++.++.+ ++.|+||+|+|.++.-+.+-|.+ + .+-|-+-.-|.-..
T Consensus 411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~--~-------~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVG--E-------CVLIVNPIFGDRLEV 479 (733)
T ss_pred CcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEec--C-------ceEEeCccccchhhh
Confidence 399999999999999999999999999966 55799999999988766644333 2 22222222231100
Q ss_pred --cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC------CCeEEEEecCCCEeEEEEeC-----------
Q 012410 176 --GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDKHVQEIKIRS----------- 236 (464)
Q Consensus 176 --~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~------tg~~l~tl~~~~V~~Vafs~----------- 236 (464)
+..+|.. + |+- ...|.++-.|.-. -|-|+..-+.+.|..|.++-
T Consensus 480 ~~t~ell~~----------~--~~~-----~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 480 GPTKELLAS----------A--PNE-----SEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred cchhhhhhc----------C--CCc-----cCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence 1111111 1 000 1223455566522 23344333456777777753
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
+....|-|-++..+..+--|.-..+.+-.|.|.|. --+++++. -..|+|||+..+++++.|.....++.+++.+|.|.
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs-~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS-KPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEecCC-CceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 23455667777666665556433356789999984 44555543 36899999999999988888888999999999999
Q ss_pred EEEEEe-CCeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe------
Q 012410 317 LFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS------ 387 (464)
Q Consensus 317 llaS~s-D~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd------ 387 (464)
.|+.++ |+.+-..|++ .+..++|.-|..- |.+|+|++-=-++||||. ||++-|+.
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~a-----vr~Va~H~ryPLfas~sd-----------Dgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-----VRSVAFHKRYPLFASGSD-----------DGTVIVFHGMVYND 684 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhh-----hhhhhhccccceeeeecC-----------CCcEEEEeeeeehh
Confidence 999999 9999888884 6789999999987 899999999999999987 99999984
Q ss_pred CCCC---eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 388 ILTG---KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 388 i~tG---~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
+... --++.|+||..- .. -.|..+.|+|.-..|+|++.|||||||
T Consensus 685 l~qnpliVPlK~L~gH~~~---~~---------------------------~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKT---ND---------------------------LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhcCCceEeeeeccCceee---cc---------------------------cceEeecccCCCceEEecCCCceEEee
Confidence 2121 136788888740 00 068889999999999999999999999
No 159
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.1e-15 Score=152.74 Aligned_cols=273 Identities=10% Similarity=0.101 Sum_probs=203.1
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecc--cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~--~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
..+..+-|- ..+|.++..+|++++|++. ++..|+.++. -.-.|.+..|.|+|...+.+| +-. +-..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s---~rr------ky~y 283 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTS---GRR------KYLY 283 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEec---ccc------eEEE
Confidence 444444444 7899999999999999843 4557888766 456799999999999444433 445 7888
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC-------
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS------- 236 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~------- 236 (464)
.||+.+++..+-.++...+ ..-....+.| |+|++||..+..+-|-|=..+|++++.+++ .+.|.+++|+.
T Consensus 284 syDle~ak~~k~~~~~g~e-~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVE-EKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred EeeccccccccccCCCCcc-cchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence 9999999986533333322 1112256776 899999999999999999999999999998 57789999975
Q ss_pred -CCceeEEEEEcCCCcEEEEEeeCCcce--eeEEEEccCCCeEEEEeCCCeEEEEECCCC------cEEEEcccCCCceE
Q 012410 237 -SSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNA------ELMEVSRTEFMTPS 307 (464)
Q Consensus 237 -s~d~tIklWdi~tG~~l~tl~~~~~~~--~~V~F~~~~~~~lla~s~D~tIkIWDv~tg------~~l~~l~gh~~~v~ 307 (464)
+.++.|-+||+.+-.|+++|... +.+ .+++-+. .+..+++||.-|-|.|||..+- +.+.++-.=+-.|.
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It 439 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT 439 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeec-CccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeee
Confidence 36789999999999999999843 222 5566555 4566667889999999995442 23444444445789
Q ss_pred EEEEcCCCcEEEEEe---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 308 AFIFLYENQLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 308 sv~FspdgqllaS~s---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
++.|+||+|+||-+| +.++||=.+ .-.....|.-....+. -|.+++|||.|-+||-|-+ +|.|
T Consensus 440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg--~vtc~aFSP~sG~lAvGNe-----------~grv 506 (514)
T KOG2055|consen 440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG--HVTCMAFSPNSGYLAVGNE-----------AGRV 506 (514)
T ss_pred eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCccc--ceEEEEecCCCceEEeecC-----------CCce
Confidence 999999999999887 779999886 4433333332222111 1889999999999999986 9999
Q ss_pred EEEeC
Q 012410 384 NVSSI 388 (464)
Q Consensus 384 klWdi 388 (464)
.||.+
T Consensus 507 ~l~kL 511 (514)
T KOG2055|consen 507 HLFKL 511 (514)
T ss_pred eeEee
Confidence 99986
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=1.5e-15 Score=157.11 Aligned_cols=232 Identities=16% Similarity=0.213 Sum_probs=164.4
Q ss_pred cCceEEEEeCCCC-cEEEEecCCCcEEEEeCC------CCeEEEEecCCCEeEEEEeC---------CCceeEEEEEcCC
Q 012410 186 KWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLK------NYTMLYSISDKHVQEIKIRS---------SSHVPLKILSIED 249 (464)
Q Consensus 186 ~~~~~VaFs~pdG-k~LaSgs~D~tiKlWdl~------tg~~l~tl~~~~V~~Vafs~---------s~d~tIklWdi~t 249 (464)
+.+.+++|.|-.. +++|.|+--|+|-+||+. +|--+.+.+...|..+.|+| +.|+||++=|+++
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 3444899975444 789999999999999994 23334455577899999987 5899999999997
Q ss_pred CcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE-EEEcccCCCceEEEEEcCCC-cEEEEEe-CC
Q 012410 250 GTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYEN-QLFLTFR-NR 324 (464)
Q Consensus 250 G~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~-l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~ 324 (464)
+..-..+.- ......+.+|+. .+..+|+++.=|...+||.+++.- .+-++-|.+.|.+++++|-. ++|||+| |+
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred hhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 643222221 112336667766 356777777445999999999765 67778899999999999865 5788999 99
Q ss_pred eEEEEeCC---Cce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC----CCeEEE
Q 012410 325 TVAVWNFR---GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL----TGKCLA 395 (464)
Q Consensus 325 TIklWd~~---Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~----tG~cl~ 395 (464)
|.||||++ ++- +-....|... |+++||||+|-.|++-|. |.+|||||.. .-..+.
T Consensus 346 T~kIWD~R~l~~K~sp~lst~~Hrrs-----V~sAyFSPs~gtl~TT~~-----------D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKASPFLSTLPHRRS-----VNSAYFSPSGGTLLTTCQ-----------DNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred ceeeeehhhhcCCCCcceecccccce-----eeeeEEcCCCCceEeecc-----------CCceEEeecccccccCCccc
Confidence 99999972 443 2344467766 999999999999999987 9999999973 112222
Q ss_pred EEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 396 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 396 tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+| .|++ ..++.| .....+|.||-+.|+.|..-.-|-+.|
T Consensus 410 ~I-~Hn~---------------------------~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 410 TI-PHNN---------------------------RTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ee-eccC---------------------------cccccc-cchhheeCCCccEEEEeccCcceeEEc
Confidence 33 3433 011111 223457888888888887666555543
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=6.2e-15 Score=163.72 Aligned_cols=282 Identities=13% Similarity=0.132 Sum_probs=195.1
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEe-CCCCcEEEEecCCCc
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD-DVNGKVLTYSAQDSI 209 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs-~pdGk~LaSgs~D~t 209 (464)
.-+.+-|+|+-..+++ +.++ -.|.+||-+.|++..+|..... ....+..++|= +-|--.|..||.||.
T Consensus 1066 ~pk~~~~hpf~p~i~~----ad~r------~~i~vwd~e~~~~l~~F~n~~~-~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAA----ADDR------ERIRVWDWEKGRLLNGFDNGAF-PDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred CCceeeecCCCceeEE----cCCc------ceEEEEecccCceeccccCCCC-CCCccceeeeecccchhheeeeccCce
Confidence 4678899999999999 3345 5899999999998665543331 11222245552 234457888999999
Q ss_pred EEEEeCC-C----CeEEEE---ecC----CCEeEEEE----------eCCCceeEEEEEcCCCcEEEEEe-eCCcceeeE
Q 012410 210 YKVFDLK-N----YTMLYS---ISD----KHVQEIKI----------RSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKV 266 (464)
Q Consensus 210 iKlWdl~-t----g~~l~t---l~~----~~V~~Vaf----------s~s~d~tIklWdi~tG~~l~tl~-~~~~~~~~V 266 (464)
||||+-. + -+++.. |++ ..=..+.+ ..++-..|+|||.+.-++.+.+. +...-+.++
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence 9999721 2 223221 211 00001111 11345789999999888887765 222222333
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEcccCCCc--eEEEEEcCCCcE-EEEEe-CCeEEEEeCCC-ceEEE
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMT--PSAFIFLYENQL-FLTFR-NRTVAVWNFRG-ELVTS 338 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l~gh~~~--v~sv~Fspdgql-laS~s-D~TIklWd~~G-e~l~t 338 (464)
.-.-..++.+++|-.||.||++|.+.-. .+.+.+.|+.. |.-+.|-+.|-- |+|+| ||.|++||+++ ...+.
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc
Confidence 3222224667778899999999998855 46788899887 888888886655 89999 99999999987 44445
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
+.--..|.++..+.++..+++..+||||+ .+.|+||++ .|+.+..++-+..+.
T Consensus 1295 ~~iv~~~~yGs~lTal~VH~hapiiAsGs------------~q~ikIy~~-~G~~l~~~k~n~~F~-------------- 1347 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHEHAPIIASGS------------AQLIKIYSL-SGEQLNIIKYNPGFM-------------- 1347 (1387)
T ss_pred ceeeeccccCccceeeeeccCCCeeeecC------------cceEEEEec-ChhhhcccccCcccc--------------
Confidence 55444454443467899999999999997 489999996 899899888665411
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
++....+.+++|+|-.-.||.|+.|.+|-|+.
T Consensus 1348 -------------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1348 -------------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred -------------cCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 11112679999999999999999999999874
No 162
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=2.1e-14 Score=145.70 Aligned_cols=219 Identities=19% Similarity=0.275 Sum_probs=170.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCC-eEEEEec-CCCEeEEEEeCC------Ccee--EEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSIS-DKHVQEIKIRSS------SHVP--LKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~~l~tl~-~~~V~~Vafs~s------~d~t--IklWdi~tG~~l~tl~~~ 259 (464)
+..|. .|+..|+-|+.|| +|++....- +|-.... +..|-+.-||.+ .+.| +|+.++..+..+-.+...
T Consensus 10 ~~~~N-qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp 87 (391)
T KOG2110|consen 10 FIGFN-QDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP 87 (391)
T ss_pred eeeec-cceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecC
Confidence 45586 7888999999998 999987753 3322222 345667777653 3334 888888877766655543
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc---CCCceEEEEEcCCCcEEEEEe---CCeEEEEeC-C
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR---NRTVAVWNF-R 332 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g---h~~~v~sv~FspdgqllaS~s---D~TIklWd~-~ 332 (464)
+.+-+|.+.. .+|++.=++. |.|+|+++-++++++.. |...+-++.+++++-++|--+ .|.|.|||. +
T Consensus 88 -t~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 -TSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred -CceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence 6788888755 4666654433 99999999999997754 445566777777777888743 789999999 7
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe-EEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt-IklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
-+.+.+++.|... +-.++|+|||.+||++|+ -|| ||++.+.+|+-+..|+--.. |
T Consensus 163 l~~v~~I~aH~~~-----lAalafs~~G~llATASe-----------KGTVIRVf~v~~G~kl~eFRRG~~-~------- 218 (391)
T KOG2110|consen 163 LQPVNTINAHKGP-----LAALAFSPDGTLLATASE-----------KGTVIRVFSVPEGQKLYEFRRGTY-P------- 218 (391)
T ss_pred ceeeeEEEecCCc-----eeEEEECCCCCEEEEecc-----------CceEEEEEEcCCccEeeeeeCCce-e-------
Confidence 8999999999988 889999999999999987 666 69999999999999865432 0
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-.|.+|+||||++.|++.|+-+|||+..
T Consensus 219 ------------------------~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 219 ------------------------VSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ------------------------eEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 1799999999999999999999999975
No 163
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.66 E-value=1e-13 Score=145.06 Aligned_cols=310 Identities=13% Similarity=0.102 Sum_probs=221.1
Q ss_pred ccceEEEEec-cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 88 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 88 ~s~v~~~~~a-g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
+.-|...-|. +.=+.+++.+|.+-+|+.-+++--+... .|+.-|.++..-.+|..| + +.-| |.|-+|
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gtll-S----GgKD------Rki~~W 313 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLL-S----GGKD------RKIILW 313 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEe-e----cCcc------ceEEec
Confidence 3445555555 4445689999999999987787777775 899999999999999755 3 4555 777777
Q ss_pred Ee--------------------ccCCCC---Cc----------ccceeeccccCce---EEEEeCCCCcEEEEecCCCcE
Q 012410 167 YI--------------------RRGKPD---SG----------FALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 167 ~i--------------------~~G~~~---~~----------~~l~~~~~~~~~~---~VaFs~pdGk~LaSgs~D~ti 210 (464)
|= ..|+.+ ++ ...|+..+++|.. .+|-. |+-..|+++++|+++
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHV 392 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceE
Confidence 62 111110 00 0112222344444 57775 777888999999999
Q ss_pred EEEeCCCCeEEEEec-CCCEeEEEEeCCCc-------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC
Q 012410 211 KVFDLKNYTMLYSIS-DKHVQEIKIRSSSH-------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 282 (464)
Q Consensus 211 KlWdl~tg~~l~tl~-~~~V~~Vafs~s~d-------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D 282 (464)
+||+ .-+++.+.. .+.+.+++|.|+.. +-.-+.|+|+-. +-++.-.......|.|+| ++..|++|+.|
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~-lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d 468 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD-LVTIHTDNEQLSVVRYSP-DGAFLAVGSHD 468 (626)
T ss_pred EEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce-eEEEEecCCceEEEEEcC-CCCEEEEecCC
Confidence 9999 556666544 78899999999753 334677999844 444432257779999999 57888889999
Q ss_pred CeEEEEECCC-CcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCce----------------EEEe---c
Q 012410 283 ENLQILDVRN-AELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL----------------VTSF---E 340 (464)
Q Consensus 283 ~tIkIWDv~t-g~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~----------------l~tl---~ 340 (464)
+.|.|+-|.. |.... .-+-|-..+..+.||+|+|.|.+-| |--|-.|. -++| .--| -
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~~~~~ts~kDvkW~t~~c~lGF~v~g 547 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK-PSECKQITSVKDVKWATYTCTLGFEVFG 547 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc-cccCcccceecceeeeeeEEEEEEEEec
Confidence 9999998865 44333 3334447888999999999999999 99999994 3332 1112 1
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC---eEEEEEccCCCCCCcccccCCCCCCc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---KCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG---~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
+-.+ .+++.++-|.+.++||||-+ -|+|+|+.-.-- -.-..+.||+.
T Consensus 548 ~s~~----t~i~a~~rs~~~~~lA~gdd-----------~g~v~lf~yPc~s~rA~~he~~ghs~--------------- 597 (626)
T KOG2106|consen 548 GSDG----TDINAVARSHCEKLLASGDD-----------FGKVHLFSYPCSSPRAPSHEYGGHSS--------------- 597 (626)
T ss_pred ccCC----chHHHhhhhhhhhhhhcccc-----------CceEEEEccccCCCcccceeeccccc---------------
Confidence 2211 23778888899999999865 799999964211 12346677776
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
-|.+|+|.-+.+.|.|.+.|..|..|+.
T Consensus 598 -------------------~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 598 -------------------HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -------------------eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 8999999999999888889999999974
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=1.4e-14 Score=154.93 Aligned_cols=261 Identities=14% Similarity=0.174 Sum_probs=194.8
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
-|..|+|-|||..|+.+. ++ .+.|.|...|-+.++.+.|...+ ..||++ .||+..|||+.|+.|
T Consensus 14 ci~d~afkPDGsqL~lAA----g~-------rlliyD~ndG~llqtLKgHKDtV----ycVAys-~dGkrFASG~aDK~V 77 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GS-------RLLVYDTSDGTLLQPLKGHKDTV----YCVAYA-KDGKRFASGSADKSV 77 (1081)
T ss_pred chheeEECCCCceEEEec----CC-------EEEEEeCCCcccccccccccceE----EEEEEc-cCCceeccCCCceeE
Confidence 689999999999999943 33 68899999999998888887543 389998 799999999999999
Q ss_pred EEEeCCC-CeEEEEecCCCEeEEEEeCCCc-------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC
Q 012410 211 KVFDLKN-YTMLYSISDKHVQEIKIRSSSH-------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 282 (464)
Q Consensus 211 KlWdl~t-g~~l~tl~~~~V~~Vafs~s~d-------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D 282 (464)
-||.-+- |.+-|+ +++.|+...|+|-++ .-.-+|+.+.-.+.+-- ...++.+.+|.. +|..++.|-.|
T Consensus 78 I~W~~klEG~LkYS-H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~k--ss~R~~~CsWtn-DGqylalG~~n 153 (1081)
T KOG1538|consen 78 IIWTSKLEGILKYS-HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHK--SSSRIICCSWTN-DGQYLALGMFN 153 (1081)
T ss_pred EEecccccceeeec-cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhh--hheeEEEeeecC-CCcEEEEeccC
Confidence 9998763 444333 467899999998322 23568888765444311 125677888876 45555558899
Q ss_pred CeEEEEECCCCcE---EEEcccCCCceEEEEEcCCC-----cEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeE
Q 012410 283 ENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 283 ~tIkIWDv~tg~~---l~~l~gh~~~v~sv~Fspdg-----qllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~s 353 (464)
|||-|=| .+||. ++...|....||+++|+|.. ..++... .+|...+.++|+.+-. +...+..|.|
T Consensus 154 GTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk-~r~L~FdP~C---- 227 (1081)
T KOG1538|consen 154 GTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK-DRALNFDPCC---- 227 (1081)
T ss_pred ceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc-cccCCCCchh----
Confidence 9999998 66664 33445677899999999864 3566666 7777777777776531 0111233333
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
+..-|+|.++.-|+. |+-++++- ..|-.|.|+-....
T Consensus 228 isYf~NGEy~LiGGs-----------dk~L~~fT-R~GvrLGTvg~~D~------------------------------- 264 (1081)
T KOG1538|consen 228 ISYFTNGEYILLGGS-----------DKQLSLFT-RDGVRLGTVGEQDS------------------------------- 264 (1081)
T ss_pred heeccCCcEEEEccC-----------CCceEEEe-ecCeEEeeccccce-------------------------------
Confidence 556689999988864 99999996 57888888754332
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|||+|+..|+||+.+-|..||||..++
T Consensus 265 ---WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 265 ---WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred ---eEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999999999999999999998765
No 165
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.65 E-value=5.3e-15 Score=150.31 Aligned_cols=209 Identities=12% Similarity=0.166 Sum_probs=150.2
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC-C----------CCcccceeeccccCce---EE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK-P----------DSGFALFESESLKWPG---FV 191 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~-~----------~~~~~l~~~~~~~~~~---~V 191 (464)
..|-.-+..|.-++.|+..+.+| -++. ..+.||++..-- + ..-.++|+.. +|-+ .+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~as--wse~------G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~--ghk~EGy~L 217 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCAS--WSEN------GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN--GHKGEGYGL 217 (440)
T ss_pred cccccccceeeecccCCcceeee--eccc------CcEEEEEchhhhhhhcCccccccccccCceEEec--ccCccceee
Confidence 45666788888888887777755 5666 789999983211 1 1123555533 3333 58
Q ss_pred EEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEc
Q 012410 192 EFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 192 aFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~ 270 (464)
.||+- .| .|+||.--+.|.+|...+|.-. + + ...|.+|...|-.++++|
T Consensus 218 dWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~-------------------------v--d--~~Pf~gH~~SVEDLqWSp 267 (440)
T KOG0302|consen 218 DWSPIKTG-RLLSGDCVKGIHLWEPSTGSWK-------------------------V--D--QRPFTGHTKSVEDLQWSP 267 (440)
T ss_pred eccccccc-ccccCccccceEeeeeccCcee-------------------------e--c--CccccccccchhhhccCC
Confidence 88731 34 4667777777888877665431 0 0 012333446667777888
Q ss_pred cCCCeEEEEeCCCeEEEEECCCC---cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC---C-CceEEEeccC
Q 012410 271 QFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---R-GELVTSFEDH 342 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg---~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~---~-Ge~l~tl~gH 342 (464)
-..+-++++|.|++|+|||++++ -|+-+ +.|..-|..+.|+.+-.+||||+ |||++|||+ . |+.+.+|+-|
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec
Confidence 65667777899999999999999 57766 78888999999998777999999 999999997 2 8899999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 343 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 343 ~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
... |.+|.|+|.....+.++ |+|..|-|||+..
T Consensus 347 k~p-----ItsieW~p~e~s~iaas----------g~D~QitiWDlsv 379 (440)
T KOG0302|consen 347 KAP-----ITSIEWHPHEDSVIAAS----------GEDNQITIWDLSV 379 (440)
T ss_pred cCC-----eeEEEeccccCceEEec----------cCCCcEEEEEeec
Confidence 988 89999999654333332 2399999999854
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.64 E-value=6.9e-16 Score=154.59 Aligned_cols=320 Identities=14% Similarity=0.121 Sum_probs=215.6
Q ss_pred CcchhhhhhhcccccccCCccccccchhhhhhccccc--eeeeecCCCCCcccchhhhccccceE------EEEec---c
Q 012410 30 GFVNSVKKLQRREICSKRDRAFSISNAQERFRNMHLV--EEYDTHDPKGHCPFVLPFLMKRTKVI------EIVAA---R 98 (464)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~s~v~------~~~~a---g 98 (464)
...|.++.=+...|..-.--.|..-..|.+|-..+=+ ..|+|.-.- -..+||.......-+ ..|-. .
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--~ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--GIRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--ceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 3566677667677777777777777788888877755 455554332 122333333332222 23333 4
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
-++|++...|+|++.|+.++++...+ .+|..-|..+-|.|+.-.|+. | +|.| +++|||+|+++.|...|-
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvl-s--~SkD------~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVL-S--ASKD------HSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEE-E--ecCC------ceEEEEeccCCeEEEEec
Confidence 58888899999999999999999999 669888999999999855544 2 4566 899999999999976555
Q ss_pred ceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCce-eEEEEEcCCCcE-EEEE
Q 012410 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHV-PLKILSIEDGTV-LKVF 256 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~-tIklWdi~tG~~-l~tl 256 (464)
+.+. |..++-+|.|+ ++|..|||++.|.++|+|++...+.-.-+. .++.|+|+... | +.|-++ +-.|
T Consensus 176 G~eg-HrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE----~s~~~~~~~t~~p-----fpt~~~~fp~f 244 (385)
T KOG1034|consen 176 GVEG-HRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLE----LSITYSPNKTTRP-----FPTPKTHFPDF 244 (385)
T ss_pred cccc-ccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhh----hhcccCCCCccCc-----CCccccccccc
Confidence 5552 55556699997 999999999999999999998654432221 11333332110 0 011111 0111
Q ss_pred ---eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEEC-CCCcEE---------EEcccCCC----ceE--EEEEcCCCcE
Q 012410 257 ---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV-RNAELM---------EVSRTEFM----TPS--AFIFLYENQL 317 (464)
Q Consensus 257 ---~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv-~tg~~l---------~~l~gh~~----~v~--sv~Fspdgql 317 (464)
.-|...|.+|.| +++.+|++|-++-|..|-. +-++-+ .+.-+++. .+| -++|.|=+++
T Consensus 245 st~diHrnyVDCvrw---~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW---FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred cccccccchHHHHHH---HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 112234466666 6789999998889999986 223321 12223332 233 4667788999
Q ss_pred EEEEe-CCeEEEEeCC-Cc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 318 FLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 318 laS~s-D~TIklWd~~-Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
||.+. -|+|-+||++ -+ ...||..+... ..|...+||-||.+|+-.|+ |+||-=||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~---~tVRQ~sfS~dgs~lv~vcd-----------d~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG---STVRQTSFSRDGSILVLVCD-----------DGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEecccc---ceeeeeeecccCcEEEEEeC-----------CCcEEEEEee
Confidence 99999 9999999994 33 34456555443 24899999999999999997 9999999853
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=1.6e-13 Score=137.87 Aligned_cols=216 Identities=12% Similarity=0.160 Sum_probs=146.1
Q ss_pred EEEecCCCcEEEEeCCC-Ce--EEEEec-CCCEeEEEEeCC---------CceeEEEEEcC-CCcE--EEEEeeCCccee
Q 012410 201 LTYSAQDSIYKVFDLKN-YT--MLYSIS-DKHVQEIKIRSS---------SHVPLKILSIE-DGTV--LKVFYHLLHRNK 264 (464)
Q Consensus 201 LaSgs~D~tiKlWdl~t-g~--~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~-tG~~--l~tl~~~~~~~~ 264 (464)
.+..+.|++|.+||+.+ |+ ++.++. ......++|+|+ .+..|.+|++. +|+. +.+... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CCCce
Confidence 34457799999999974 54 556665 356778888874 45678999996 5653 222221 12346
Q ss_pred eEEEEccCCCeEEEEe-CCCeEEEEECCC-C---cEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-C-Cce
Q 012410 265 KVDFIEQFNEKLLVKQ-ENENLQILDVRN-A---ELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-R-GEL 335 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g---~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~-Ge~ 335 (464)
.|+|+|+ +..+++++ .++.|.+||+.+ | +.+..+.++ ..+..++|+|||+.+..++ +++|.+||+ + |++
T Consensus 84 ~i~~~~~-g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 84 HISTDHQ-GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEEECCC-CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 7899884 55666665 689999999974 3 334444433 4577889999999886655 899999999 4 554
Q ss_pred EE------EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC--CC--eEEEEEccCCCCCC
Q 012410 336 VT------SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TG--KCLAKINATNCSPK 405 (464)
Q Consensus 336 l~------tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG--~cl~tl~gh~~~~~ 405 (464)
.. +...... ...++|+|||++|++.+. .+++|.+||+. +| +.+.++..+..
T Consensus 162 ~~~~~~~~~~~~g~~------p~~~~~~pdg~~lyv~~~----------~~~~v~v~~~~~~~~~~~~~~~~~~~p~--- 222 (330)
T PRK11028 162 VAQEPAEVTTVEGAG------PRHMVFHPNQQYAYCVNE----------LNSSVDVWQLKDPHGEIECVQTLDMMPA--- 222 (330)
T ss_pred cccCCCceecCCCCC------CceEEECCCCCEEEEEec----------CCCEEEEEEEeCCCCCEEEEEEEecCCC---
Confidence 21 1111111 357999999999988764 38999999997 34 44555543321
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC-CCcEEecc
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR-HGLVHVWS 463 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~-DgtVrlWd 463 (464)
... + -.+...++|+|||+.||++++ +++|.+|+
T Consensus 223 ~~~----~---------------------~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 223 DFS----D---------------------TRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred cCC----C---------------------CccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 000 0 013346899999999999975 78999986
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=2.8e-15 Score=146.83 Aligned_cols=270 Identities=13% Similarity=0.140 Sum_probs=177.5
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.|...|.|+-|..++. |.+ +... ..+++|.+.+.+..-.+.+|....+- ...-- |++ .|.+-+.
T Consensus 12 p~~~~v~s~~fqa~~r-L~s----g~~~------G~V~~w~lqt~r~~~~~r~~g~~~it---~lq~~-p~d-~l~tqgR 75 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMS----GLSV------GIVKMWVLQTERDLPLIRLFGRLFIT---NLQSI-PND-SLDTQGR 75 (323)
T ss_pred cccchheehhhccchh-hhc----cccc------ceEEEEEeecCccchhhhhhccceee---ceeec-CCc-chhhcCC
Confidence 4777799999999887 544 3333 79999999887765445544432221 12221 665 5667789
Q ss_pred CCcEEEEeCCCCeE--------------EEEec--CCCEeEEEEeCC--CceeEEEEEcCCCcEEEEEe------eCCcc
Q 012410 207 DSIYKVFDLKNYTM--------------LYSIS--DKHVQEIKIRSS--SHVPLKILSIEDGTVLKVFY------HLLHR 262 (464)
Q Consensus 207 D~tiKlWdl~tg~~--------------l~tl~--~~~V~~Vafs~s--~d~tIklWdi~tG~~l~tl~------~~~~~ 262 (464)
|.++-+|++.-+.. -.++. ...+....+.|+ .|. +.+-|- |...++.- ..++.
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~--g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDG--GDTTQVQIADDSERSKLGS 152 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-hhhhcc--CccceeEccCchhccccCc
Confidence 99999999987433 22222 122323333332 221 111111 11111110 01122
Q ss_pred e--eeEEEEccCCC-eEEEEeCCCeEEEEECCCCcEEE----------EcccCCCceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 263 N--KKVDFIEQFNE-KLLVKQENENLQILDVRNAELME----------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 263 ~--~~V~F~~~~~~-~lla~s~D~tIkIWDv~tg~~l~----------~l~gh~~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
+ .++.|-.- .. .+|+|-++|.+-+||+.++..+- -...|.+.|.++.|-+--..=++++ +..+-.
T Consensus 153 vmc~~~~~~c~-s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 153 VMCQDKDHACG-STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM 231 (323)
T ss_pred eeeeecccccc-ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence 2 12222121 12 34456799999999999984332 2345788899998876666667778 778889
Q ss_pred EeC--C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 329 WNF--R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 329 Wd~--~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
|++ + |.|... .-|...+ |.|+.|.+-|||+++|+++- |+.||+++-.|++-|+.|+-|+.
T Consensus 232 ~Sl~~s~gslq~~-~e~~lkn--pGv~gvrIRpD~KIlATAGW-----------D~RiRVyswrtl~pLAVLkyHsa--- 294 (323)
T KOG0322|consen 232 YSLNHSTGSLQIR-KEITLKN--PGVSGVRIRPDGKILATAGW-----------DHRIRVYSWRTLNPLAVLKYHSA--- 294 (323)
T ss_pred eeeccccCccccc-ceEEecC--CCccceEEccCCcEEeeccc-----------CCcEEEEEeccCCchhhhhhhhc---
Confidence 987 2 665321 1122222 33889999999999999986 99999999999999999999987
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+|||+||...||.||.|+.|-||++
T Consensus 295 -------------------------------gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 -------------------------------GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -------------------------------ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8999999999999999999999999985
No 169
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=4.7e-14 Score=148.23 Aligned_cols=244 Identities=9% Similarity=0.113 Sum_probs=153.1
Q ss_pred EEEeccceeehhcc------CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 93 EIVAARDIVFALAH------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 93 ~~~~ag~~l~~l~~------~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++|...+.+.... ...+.+|| .+|.+.+.+.. +.+.+.+.+|+|||+.|+.+|... .+ .++.+|
T Consensus 163 ~g~f~~~ia~v~~~~~~~~~~~~l~i~D-~~g~~~~~lt~-~~~~v~~p~wSpDg~~la~~s~~~-~~------~~l~~~ 233 (433)
T PRK04922 163 PGAFWTRIAYVTVSGAGGAMRYALQVAD-SDGYNPQTILR-SAEPILSPAWSPDGKKLAYVSFER-GR------SAIYVQ 233 (433)
T ss_pred CCcccceEEEEEEeCCCCCceEEEEEEC-CCCCCceEeec-CCCccccccCCCCCCEEEEEecCC-CC------cEEEEE
Confidence 45666665554332 22688888 46776666644 566799999999999999866322 22 579999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe-cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg-s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. .+.. .-+....++|| |||+.|+.. +.++. ..|.+|
T Consensus 234 dl~~g~~~---~l~~--~~g~~~~~~~S-pDG~~l~~~~s~~g~------------------------------~~Iy~~ 277 (433)
T PRK04922 234 DLATGQRE---LVAS--FRGINGAPSFS-PDGRRLALTLSRDGN------------------------------PEIYVM 277 (433)
T ss_pred ECCCCCEE---Eecc--CCCCccCceEC-CCCCEEEEEEeCCCC------------------------------ceEEEE
Confidence 99888752 1111 11333478997 899987643 33331 124445
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCe--EEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEE
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~t--IkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~ 321 (464)
|+++|++.+ +..+......++|+| ++.+|+..+ .++. |.++|+.+++..+. ..++ .....+|||||+.|+..
T Consensus 278 d~~~g~~~~-lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~--~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 278 DLGSRQLTR-LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN--YNARASVSPDGKKIAMV 353 (433)
T ss_pred ECCCCCeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC--CccCEEECCCCCEEEEE
Confidence 555554332 222212335678888 466677665 4444 66668778876543 2332 34468899999999876
Q ss_pred e-CC---eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 322 R-NR---TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 322 s-D~---TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+ ++ .|.+||+ +|+.. .|... .+ ..+..|+|||++|+..+. .+..+.|.++|+ +|.-.+.
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt~~-~~-----~~~p~~spdG~~i~~~s~--------~~g~~~L~~~~~-~g~~~~~ 417 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLTPG-SL-----DESPSFAPNGSMVLYATR--------EGGRGVLAAVST-DGRVRQR 417 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECCCC-CC-----CCCceECCCCCEEEEEEe--------cCCceEEEEEEC-CCCceEE
Confidence 5 32 6999999 46654 55432 23 346789999999988765 122456888887 5666666
Q ss_pred EccCC
Q 012410 397 INATN 401 (464)
Q Consensus 397 l~gh~ 401 (464)
+..+.
T Consensus 418 l~~~~ 422 (433)
T PRK04922 418 LVSAD 422 (433)
T ss_pred cccCC
Confidence 65543
No 170
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.63 E-value=9.6e-15 Score=152.51 Aligned_cols=245 Identities=16% Similarity=0.186 Sum_probs=185.5
Q ss_pred eEEeeeccccc---EeeEee-cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecc
Q 012410 109 VCAAFSRETNR---RICFLN-VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184 (464)
Q Consensus 109 ~~~~~~~~~g~---~l~~ln-~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~ 184 (464)
-+++||+.+-. ++..|. ...++.|||.-..|||.+|++ +++- -++.|||++.--+.-. .-+++
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv----GGea------stlsiWDLAapTprik-aelts-- 507 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV----GGEA------STLSIWDLAAPTPRIK-AELTS-- 507 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe----cccc------ceeeeeeccCCCcchh-hhcCC--
Confidence 78999965421 222221 124678999999999999999 6665 7899999965443110 11111
Q ss_pred ccCce--EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcE
Q 012410 185 LKWPG--FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 185 ~~~~~--~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~ 252 (464)
.-|. .++.| ||.++.-++-.|+.|.||||.+-.++..|. .+.+.+|.+++ .-|.|||-||+.+|..
T Consensus 508 -sapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq 585 (705)
T KOG0639|consen 508 -SAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ 585 (705)
T ss_pred -cchhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh
Confidence 1122 58887 999999999999999999999999999988 57899999986 3788999999999977
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
++.... ...++++-..|+ ++-+++|=+++++-|... ++.-...+.-|..-|-++-|.|-|+.|+|.+ |.-+-.|-.
T Consensus 586 lqqhdF-~SQIfSLg~cP~-~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 586 LQQHDF-SSQIFSLGYCPT-GDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred hhhhhh-hhhheecccCCC-ccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 754332 256788888884 678888889999998874 4444555666778899999999999999999 999999998
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
-|.-+-....-.. |.++.+|.|.++|++||- |...-++.+
T Consensus 663 PyGasiFqskE~Ss------VlsCDIS~ddkyIVTGSG-----------dkkATVYeV 703 (705)
T KOG0639|consen 663 PYGASIFQSKESSS------VLSCDISFDDKYIVTGSG-----------DKKATVYEV 703 (705)
T ss_pred ccccceeeccccCc------ceeeeeccCceEEEecCC-----------CcceEEEEE
Confidence 5776544443332 788999999999999985 766666654
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.63 E-value=2.8e-15 Score=152.95 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=112.1
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-------EEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeE
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTV 326 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-------~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TI 326 (464)
+.+|...+-.++|.|.++.-|++||+|.+|+||++=.+- .+..|.||+..|--|++.|-- +.|+|++ |.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 346778889999999555566668999999999986653 456889999999999999854 4566776 9999
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
+|||+ +|+-+-+|. |..- |+|+.|+-||.+|++.|+ |..|||||..+|+.+..-.+|.+
T Consensus 157 ~iWnv~tgeali~l~-hpd~-----i~S~sfn~dGs~l~Ttck-----------DKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDM-----VYSMSFNRDGSLLCTTCK-----------DKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred EEEeccCCceeeecC-CCCe-----EEEEEeccCCceeeeecc-----------cceeEEEcCCCCcEeeecccccC
Confidence 99999 899998988 8776 899999999999999998 99999999999999999889986
No 172
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=7.6e-14 Score=146.65 Aligned_cols=244 Identities=11% Similarity=0.118 Sum_probs=154.0
Q ss_pred EEEeccceeehhccCC--eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc
Q 012410 93 EIVAARDIVFALAHSG--VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 93 ~~~~ag~~l~~l~~~g--~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~ 170 (464)
.++|.+.+.+.....+ .+.++| .+|.....+. .+.+.+.+..|||||+.|+.+|. ...+ ..+.+|++.+
T Consensus 159 ~g~f~~~iayv~~~~~~~~L~~~D-~dG~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~-~~~~------~~I~~~dl~~ 229 (427)
T PRK02889 159 RGVFSTRIAYVIKTGNRYQLQISD-ADGQNAQSAL-SSPEPIISPAWSPDGTKLAYVSF-ESKK------PVVYVHDLAT 229 (427)
T ss_pred CcccccEEEEEEccCCccEEEEEC-CCCCCceEec-cCCCCcccceEcCCCCEEEEEEc-cCCC------cEEEEEECCC
Confidence 5777788887775544 455555 4677766663 46677999999999999988662 2222 5799999998
Q ss_pred CCCCCcccceeeccccCceEEEEeCCCCcEEEE-ecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCC
Q 012410 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIED 249 (464)
Q Consensus 171 G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaS-gs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~t 249 (464)
|+.. .+... -++...++|| |||+.|+. .+.|+...||.+. +.+
T Consensus 230 g~~~---~l~~~--~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d------------------------------~~~ 273 (427)
T PRK02889 230 GRRR---VVANF--KGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVN------------------------------ADG 273 (427)
T ss_pred CCEE---EeecC--CCCccceEEC-CCCCEEEEEEccCCCceEEEEE------------------------------CCC
Confidence 8753 12111 1344478997 89998874 5667766666432 222
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEEC--CCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe-CC
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv--~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s-D~ 324 (464)
|+ ++.+..+...+.++.|+| ++.+|+..+ .++..+||.+ .+++..+. +.++ ...+.+|||||+.|+..+ ++
T Consensus 274 ~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~--~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 274 SG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS--YNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred CC-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC--CcCceEECCCCCEEEEEEccC
Confidence 22 222322112345677888 466676655 4567777754 55654332 3332 234567999999999776 43
Q ss_pred ---eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 325 ---TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 325 ---TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
.|.+||+ +|+. +.+..+ .+ ..+..|+|||+.|+..+.. +....+.+-++ +|+-.+.+..+
T Consensus 350 g~~~I~v~d~~~g~~-~~lt~~-~~-----~~~p~~spdg~~l~~~~~~--------~g~~~l~~~~~-~g~~~~~l~~~ 413 (427)
T PRK02889 350 GAFKLYVQDLATGQV-TALTDT-TR-----DESPSFAPNGRYILYATQQ--------GGRSVLAAVSS-DGRIKQRLSVQ 413 (427)
T ss_pred CcEEEEEEECCCCCe-EEccCC-CC-----ccCceECCCCCEEEEEEec--------CCCEEEEEEEC-CCCceEEeecC
Confidence 6999999 4664 445433 22 3568999999999988751 11223555565 67766667555
Q ss_pred C
Q 012410 401 N 401 (464)
Q Consensus 401 ~ 401 (464)
.
T Consensus 414 ~ 414 (427)
T PRK02889 414 G 414 (427)
T ss_pred C
Confidence 4
No 173
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.62 E-value=3.6e-14 Score=148.09 Aligned_cols=265 Identities=11% Similarity=0.100 Sum_probs=190.4
Q ss_pred hccCCeEEeeecccccEeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee
Q 012410 104 LAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182 (464)
Q Consensus 104 l~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~ 182 (464)
++....+++||+..-..--.++. ....-+.|+.++..+. |+++| .+.| ..++||. +.|+ ..+.++...
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas--~~gd------k~~~~~~-K~g~-~~~Vp~~~k 76 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVAS--MAGD------KVMRIKE-KDGK-TPEVPRVRK 76 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEee--cCCc------eeEEEec-ccCC-CCccceeec
Confidence 34455789999664332222211 1223489999999876 77766 5555 6888887 7777 333343332
Q ss_pred ccccC----ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC--------CCceeEEEEEcC
Q 012410 183 ESLKW----PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS--------SSHVPLKILSIE 248 (464)
Q Consensus 183 ~~~~~----~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~--------s~d~tIklWdi~ 248 (464)
. .+- +....|| .++.||++.++|||||++.--|.+.+.+ ..|..|.+.. +.-+-|-|-++.
T Consensus 77 ~-~gd~~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 77 L-TGDNAFCVACASQS----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK 151 (673)
T ss_pred c-ccchHHHHhhhhcc----eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc
Confidence 1 010 1134454 7999999999999999995555556663 5677777743 334568899999
Q ss_pred CCcEEEEEeeC-CcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEE-EEcccCCCceEEEEEcCCCc-EEEEEe-C
Q 012410 249 DGTVLKVFYHL-LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQ-LFLTFR-N 323 (464)
Q Consensus 249 tG~~l~tl~~~-~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l-~~l~gh~~~v~sv~Fspdgq-llaS~s-D 323 (464)
|+.--.+|.+. ...++=+.|++ +...+|. .++||+|.|||++....+ +.+..|......|.|||-+. +|+|-+ |
T Consensus 152 t~~~tt~f~~~sgqsvRll~ys~-skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 152 TKQKTTTFTIDSGQSVRLLRYSP-SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred cCccccceecCCCCeEEEeeccc-ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 99988889854 45668899998 4555665 789999999998776554 46788998889999998765 566777 9
Q ss_pred CeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCC
Q 012410 324 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATN 401 (464)
Q Consensus 324 ~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~ 401 (464)
..|-++|.. -....+|.-. +| ..+|+|+|+|.+|+.|.. .|.|--+|+.. -+.++++.+|.
T Consensus 231 kki~~yD~~s~~s~~~l~y~---~P---lstvaf~~~G~~L~aG~s-----------~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTYS---HP---LSTVAFSECGTYLCAGNS-----------KGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred ceEEEeecccccccceeeec---CC---cceeeecCCceEEEeecC-----------CceEEEEecccCCCCceEeeecc
Confidence 999999984 5555555432 12 678999999999999975 89999999964 46789999998
Q ss_pred C
Q 012410 402 C 402 (464)
Q Consensus 402 ~ 402 (464)
.
T Consensus 294 ~ 294 (673)
T KOG4378|consen 294 A 294 (673)
T ss_pred c
Confidence 7
No 174
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=5.9e-13 Score=140.24 Aligned_cols=200 Identities=15% Similarity=0.154 Sum_probs=136.1
Q ss_pred CCcEEEEeCCCCeEEE-EecCCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC
Q 012410 207 DSIYKVFDLKNYTMLY-SISDKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~-tl~~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~ 274 (464)
...+.|||...+.... +-....+.+.+|||+ .+..|.+|++.+|+........ ..+..++|+| ++.
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SP-DG~ 255 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSP-DGS 255 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECC-CCC
Confidence 3478888887554432 222457888999885 2346899999999754432221 3356789999 466
Q ss_pred eEEEE-eCCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEE--eCCCceEEEeccCCCCcC
Q 012410 275 KLLVK-QENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHP 347 (464)
Q Consensus 275 ~lla~-s~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklW--d~~Ge~l~tl~gH~~~~~ 347 (464)
+|+.. +.++ .|.+||+.+|++.+...++ ..+....|+|||+.|+..+ ++..+|| |+.|...+.+..+...
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~-- 332 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ-- 332 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC--
Confidence 67764 4444 5889999999987765554 4567889999999888777 4566777 5544334445444333
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
.....|||||++|+..+.. +....|.+||+.+|+. ..|....
T Consensus 333 ---~~~~~~SpDG~~Ia~~~~~--------~g~~~I~~~dl~~g~~-~~Lt~~~-------------------------- 374 (429)
T PRK03629 333 ---NQDADVSSDGKFMVMVSSN--------GGQQHIAKQDLATGGV-QVLTDTF-------------------------- 374 (429)
T ss_pred ---ccCEEECCCCCEEEEEEcc--------CCCceEEEEECCCCCe-EEeCCCC--------------------------
Confidence 3468899999999887641 1245799999998874 3443211
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
...+..|||||+.|+.++.|+.
T Consensus 375 ---------~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 375 ---------LDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ---------CCCCceECCCCCEEEEEEcCCC
Confidence 2235689999999999998876
No 175
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.3e-13 Score=143.08 Aligned_cols=244 Identities=10% Similarity=0.112 Sum_probs=154.6
Q ss_pred EEEeccceeehhccCC------eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 93 EIVAARDIVFALAHSG------VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 93 ~~~~ag~~l~~l~~~g------~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++|...|.++....+ .+.++| .+|.....+.. +.+.+.+..|||||+.|+.+|.. ..+ .++.+|
T Consensus 161 ~g~f~~~iafv~~~~~~~~~~~~l~~~d-~dg~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~-~g~------~~i~~~ 231 (435)
T PRK05137 161 KGYFDTRIVYVAESGPKNKRIKRLAIMD-QDGANVRYLTD-GSSLVLTPRFSPNRQEITYMSYA-NGR------PRVYLL 231 (435)
T ss_pred CCcCCCeEEEEEeeCCCCCcceEEEEEC-CCCCCcEEEec-CCCCeEeeEECCCCCEEEEEEec-CCC------CEEEEE
Confidence 4777777877766555 667777 46777777744 66779999999999999887632 223 689999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEE-ecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaS-gs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. ..+. .-+.....+|| |||+.|+. .+.|+... |.+|
T Consensus 232 dl~~g~~~----~l~~-~~g~~~~~~~S-PDG~~la~~~~~~g~~~------------------------------Iy~~ 275 (435)
T PRK05137 232 DLETGQRE----LVGN-FPGMTFAPRFS-PDGRKVVMSLSQGGNTD------------------------------IYTM 275 (435)
T ss_pred ECCCCcEE----Eeec-CCCcccCcEEC-CCCCEEEEEEecCCCce------------------------------EEEE
Confidence 99888752 1121 11233378897 89998764 44444322 3334
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CC--CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D--~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
|+++|++. .+..+......++|+| ++.+|+..+ .+ ..|.+||+.+++..+...+ ...+....|||||+.|+..+
T Consensus 276 d~~~~~~~-~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 276 DLRSGTTT-RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ECCCCceE-EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEE
Confidence 44444432 2332223345677887 456676655 33 3688889887776554432 33455678999999998766
Q ss_pred -C---CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC--CeEEEEeCCCCeEEEE
Q 012410 323 -N---RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA--GSINVSSILTGKCLAK 396 (464)
Q Consensus 323 -D---~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D--gtIklWdi~tG~cl~t 396 (464)
+ ..|.+||.+|...+.+..- .. +.+..|||||+.|+-.+.. .+.. ..+.+.|+ +|+..+.
T Consensus 353 ~~~~~~~i~~~d~~~~~~~~lt~~-~~-----~~~p~~spDG~~i~~~~~~-------~~~~~~~~L~~~dl-~g~~~~~ 418 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSGERILTSG-FL-----VEGPTWAPNGRVIMFFRQT-------PGSGGAPKLYTVDL-TGRNERE 418 (435)
T ss_pred cCCCceEEEEEECCCCceEeccCC-CC-----CCCCeECCCCCEEEEEEcc-------CCCCCcceEEEEEC-CCCceEE
Confidence 3 3688899866555555421 11 4578999999999876541 1111 35777786 4444555
Q ss_pred Ec
Q 012410 397 IN 398 (464)
Q Consensus 397 l~ 398 (464)
|.
T Consensus 419 l~ 420 (435)
T PRK05137 419 VP 420 (435)
T ss_pred cc
Confidence 54
No 176
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.61 E-value=2.8e-14 Score=152.32 Aligned_cols=253 Identities=12% Similarity=0.109 Sum_probs=167.5
Q ss_pred eEEEEec--cceeehhccCCeEEeeecccccEeeE-eecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 91 VIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 91 v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~-ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
|.++..+ ...|.+.+-|.+++.||+.++++.-. ++.+|..-|+|++|.|++.-+... |+-| ..+.|||
T Consensus 103 ifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t---GgRD------g~illWD 173 (720)
T KOG0321|consen 103 IFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT---GGRD------GEILLWD 173 (720)
T ss_pred eEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee---ccCC------CcEEEEE
Confidence 4444444 45667777888999999999887765 668999999999999998765442 4556 6999999
Q ss_pred eccCCCCC-------------ccc-----c----ee-----eccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCCCe
Q 012410 168 IRRGKPDS-------------GFA-----L----FE-----SESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYT 219 (464)
Q Consensus 168 i~~G~~~~-------------~~~-----l----~~-----~~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~ 219 (464)
++.-..++ +-+ + .. ......+..|.| -|..+|||++. |++||||||..-+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccc
Confidence 96444211 100 0 00 001222334666 47789999888 9999999999776
Q ss_pred EEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc-CCCeEEEEeCCCeEEEEECCCCc--EE
Q 012410 220 MLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAE--LM 296 (464)
Q Consensus 220 ~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~-~~~~lla~s~D~tIkIWDv~tg~--~l 296 (464)
+.+.... ...-.+...+-. .+.-+.|+-+ +|.+|+|...|++|..||+.+-. .+
T Consensus 252 ~~~r~ep--~~~~~~~t~skr---------------------s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~ 308 (720)
T KOG0321|consen 252 TAYRQEP--RGSDKYPTHSKR---------------------SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV 308 (720)
T ss_pred cccccCC--CcccCccCcccc---------------------eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch
Confidence 6554331 111111100000 1112222222 36788888899999999988733 23
Q ss_pred EEcccCCC---ceEEEEEcCCCcEEEEEe-CCeEEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECC--CCCEEEEEec
Q 012410 297 EVSRTEFM---TPSAFIFLYENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITS--DQDLIISYCK 368 (464)
Q Consensus 297 ~~l~gh~~---~v~sv~FspdgqllaS~s-D~TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSp--Dg~~LaSgs~ 368 (464)
..+.||.. .+.+ ..|||++.++|++ |...-+|.+ + -+-+..|.||+-- |..|++.| ++..+.+ |+
T Consensus 309 ~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e-----Vt~V~w~pS~~t~v~Tc-Sd 381 (720)
T KOG0321|consen 309 AEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE-----VTTVRWLPSATTPVATC-SD 381 (720)
T ss_pred hhccCcccceeeeee-ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE-----EEEEeeccccCCCceee-cc
Confidence 34444432 2222 3789999999999 999999999 4 4457789999876 77888865 5665554 65
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
|-+++||++..|-|-.
T Consensus 382 -----------D~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 382 -----------DFRVKIWRLSNGLEEI 397 (720)
T ss_pred -----------CcceEEEeccCchhhc
Confidence 9999999998776543
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.3e-14 Score=144.21 Aligned_cols=258 Identities=15% Similarity=0.175 Sum_probs=177.8
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEec--C---CCEeEEEE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D---KHVQEIKI 234 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~---~~V~~Vaf 234 (464)
.+++|.|..+|+..+.|+.+. .+.+.|.|.+- .+..+.||+.||+||+||+.+-.....+. . ..--+++.
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~----~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPP----ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL 125 (376)
T ss_pred CeEEEEeccchhhhheecCCC----CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence 499999999999887666555 33447888643 35568899999999999998655432222 1 22334444
Q ss_pred eC------------CCceeEEEEEcCCCcE-EEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc----EE
Q 012410 235 RS------------SSHVPLKILSIEDGTV-LKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LM 296 (464)
Q Consensus 235 s~------------s~d~tIklWdi~tG~~-l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~----~l 296 (464)
.. ..+..|-+||+..-+. +..+. .|..-|..|.|.|.+++.||+||.||-|-|+|+..-. ++
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence 21 3678899999987665 66665 4447789999999999999999999999999987643 33
Q ss_pred EEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCCCC------cCCC-CeeEEEECCCCCEEEEE
Q 012410 297 EVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW------HPDC-NTNNIYITSDQDLIISY 366 (464)
Q Consensus 297 ~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~------~~~~-~v~svafSpDg~~LaSg 366 (464)
+++. |...|..+.|+-++ +.|.+-+ ..|.++|+. +|.+...|+..... ..+| +|-...-..|+++.+-+
T Consensus 206 ~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 206 HVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA 284 (376)
T ss_pred Hhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEe
Confidence 4444 44568888999777 3366667 999999999 69988877754210 0001 12233335566766665
Q ss_pred ecCCCccccccCCCCeEEEEe-CC---CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 367 CKAEPEDQWMEGSAGSINVSS-IL---TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 367 s~~~~~~~~~~s~DgtIklWd-i~---tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
.. .++-++|-.-+ .. .++-++.|+||.. +-|.++.
T Consensus 285 g~--------~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~---------------------------------eiVR~i~ 323 (376)
T KOG1188|consen 285 GT--------DSNKGTIFPLVDTSSGSLLTEPAILQGGHE---------------------------------EIVRDIL 323 (376)
T ss_pred cc--------ccCceeEEEeeecccccccCccccccCCcH---------------------------------HHHHHHh
Confidence 43 12234443333 22 3455667777432 2788999
Q ss_pred EcCCCCEEEEeeCCCcEEeccC
Q 012410 443 YDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 443 fspDg~~LaSgs~DgtVrlWd~ 464 (464)
|.-.+..|+||++||.+.+|.+
T Consensus 324 ~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 324 FDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhcccceeeccCCCceEEEEec
Confidence 9999999999999999999963
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.60 E-value=1.5e-15 Score=165.43 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=200.1
Q ss_pred ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd 197 (464)
-|.+..| .+|-+.|+++.|-.-|.++|+ ++|| +.+|||...++.+++..++|+.+.. -.|-+ .+
T Consensus 180 mk~ikrL-lgH~naVyca~fDrtg~~Iit----gsdd------~lvKiwS~et~~~lAs~rGhs~dit----dlavs-~~ 243 (1113)
T KOG0644|consen 180 MKNIKRL-LGHRNAVYCAIFDRTGRYIIT----GSDD------RLVKIWSMETARCLASCRGHSGDIT----DLAVS-SN 243 (1113)
T ss_pred HHHHHHH-HhhhhheeeeeeccccceEee----cCcc------ceeeeeeccchhhhccCCCCccccc----hhccc-hh
Confidence 3455666 568888999999999999999 8899 9999999999999998888885533 55665 57
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC----CCceeEEEEEcCCCcEEEEEeeC-----CcceeeE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS----SSHVPLKILSIEDGTVLKVFYHL-----LHRNKKV 266 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~----s~d~tIklWdi~tG~~l~tl~~~-----~~~~~~V 266 (464)
.-.+|++|.|..|+||.+.+|.++..|. ++.|.+|+|+| +.|+|+++||.. -+.+..-.-. ..-+-++
T Consensus 244 n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 244 NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEecccc-ccccccCCCCCCcccccceeee
Confidence 7789999999999999999999987765 57899999988 689999999986 2222211100 0112333
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
.|-. .+...+++++|++-+.|....-.| |...+.=+.++-|- ...+++. +--+.+||+ +|.+++.+.||.
T Consensus 323 ~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 323 LFEN-NGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred eccc-cccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence 4422 245677889999999987544333 22222222233222 4566777 889999999 899999999999
Q ss_pred CCcCCCCeeEEEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCCCCCCccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
.. +.-+-|+|=.-.|+ |++ .||++-|||+-.|--++.. .||.
T Consensus 396 d~-----~yvLd~Hpfn~ri~msag-----------~dgst~iwdi~eg~pik~y~~gh~-------------------- 439 (1113)
T KOG0644|consen 396 DE-----VYVLDVHPFNPRIAMSAG-----------YDGSTIIWDIWEGIPIKHYFIGHG-------------------- 439 (1113)
T ss_pred cc-----eeeeeecCCCcHhhhhcc-----------CCCceEeeecccCCcceeeecccc--------------------
Confidence 98 77899999665554 443 4999999999999877654 4554
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.+..-+||+||+.++...+.|.+.+
T Consensus 440 ---------------kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 440 ---------------KLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ---------------eeeccccCCCCceEecCCCCCceEE
Confidence 4455689999999998888777665
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=8.2e-15 Score=164.11 Aligned_cols=239 Identities=12% Similarity=0.160 Sum_probs=181.0
Q ss_pred CCceEEEEEEeeCCCE----EEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee--eccccCceEEEEeCCCCcEE
Q 012410 128 PDEVIRSLFYNKNNDS----LITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~----l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~--~~~~~~~~~VaFs~pdGk~L 201 (464)
-++..+.++|.+.|.. ||. |.+| +.|-||+...=..+....+.. ..|.+++-.+.|+.--|.+|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaG----G~ed------G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAG----GLED------GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ccccceeeeecccCCCccceeec----cccC------CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCcee
Confidence 3456788899998887 443 5677 899999964311111111111 12446666899984444499
Q ss_pred EEecCCCcEEEEeCCCCeEEEEec----CCCEeEEEE---------eCCCceeEEEEEcCCCcEEEEEeeCCc--ceeeE
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKI---------RSSSHVPLKILSIEDGTVLKVFYHLLH--RNKKV 266 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~----~~~V~~Vaf---------s~s~d~tIklWdi~tG~~l~tl~~~~~--~~~~V 266 (464)
|||+.|++|-|||+++-+.-++.. .+.|-.|++ |.+.++.+-|||+..-+.+-.|..+.. ++..|
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence 999999999999999855544442 356777777 346778999999997776666664322 35799
Q ss_pred EEEccCCCeEEEEeCC---CeEEEEECCCC-cEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 267 DFIEQFNEKLLVKQEN---ENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D---~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
+|+|..-.+++++++| -.|++||++.- ..++++++|...|.++.|++.+ .+|+|++ |+.|-+||. +||.|..|
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 9999766777777643 58999999874 4788999999999999999877 8899988 999999999 79999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 340 EDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
.-..+| +..|.|.|-.- +++.+|. ||.|-|..+.++-
T Consensus 293 p~~~nW-----~fdv~w~pr~P~~~A~asf-----------dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 293 PAQGNW-----CFDVQWCPRNPSVMAAASF-----------DGKISIYSLQGTD 330 (1049)
T ss_pred CCCCcc-----eeeeeecCCCcchhhhhee-----------ccceeeeeeecCC
Confidence 999999 78899999655 7777776 9999999986543
No 180
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.6e-13 Score=139.12 Aligned_cols=196 Identities=11% Similarity=0.056 Sum_probs=129.9
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
..+|.+||.. |...+.+. ...+.+.+|+|+ .+..|.+||+.+|+....... ...+..++|+| ++
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g~~~~~~~Sp-DG 259 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RGINGAPSFSP-DG 259 (433)
T ss_pred eEEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CCCccCceECC-CC
Confidence 4579999985 44444443 456788888874 234699999999987543222 23456789999 46
Q ss_pred CeEEE-EeCCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCe--EEEEeCC-CceEEEeccCCCC
Q 012410 274 EKLLV-KQENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNFR-GELVTSFEDHLLW 345 (464)
Q Consensus 274 ~~lla-~s~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~T--IklWd~~-Ge~l~tl~gH~~~ 345 (464)
.+|+. .+.++ .|.+||+.+|++.+ +..|.....+++|+|||+.|+..+ ++. |-++|+. |+. +.+..+...
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 67765 45554 69999999998755 444544556789999999888777 455 4445663 554 333222222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
..+++|||||++|+-.+. .+....|.+||+.+|+.. .|. +..
T Consensus 338 -----~~~~~~SpDG~~Ia~~~~--------~~~~~~I~v~d~~~g~~~-~Lt-~~~----------------------- 379 (433)
T PRK04922 338 -----NARASVSPDGKKIAMVHG--------SGGQYRIAVMDLSTGSVR-TLT-PGS----------------------- 379 (433)
T ss_pred -----ccCEEECCCCCEEEEEEC--------CCCceeEEEEECCCCCeE-ECC-CCC-----------------------
Confidence 236899999999987653 112347999999888754 442 211
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
...+.+|+|||+.|+..+.+
T Consensus 380 -----------~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 380 -----------LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred -----------CCCCceECCCCCEEEEEEec
Confidence 23356899999988877653
No 181
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=1.2e-13 Score=131.09 Aligned_cols=109 Identities=14% Similarity=0.217 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCcEEEEE--e-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 304 MTPSAFIFLYENQLFLTF--R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~--s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
..|.+++|+|+|+.||.. . +++|.|||++++.+.+|..+ . ++.|+|||+|++||.++. +...
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~--~-----~n~i~wsP~G~~l~~~g~--------~n~~ 124 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQ--P-----RNTISWSPDGRFLVLAGF--------GNLN 124 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCC--C-----ceEEEECCCCCEEEEEEc--------cCCC
Confidence 469999999999987654 4 78999999999999998643 2 689999999999999985 2235
Q ss_pred CeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC-----
Q 012410 381 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR----- 455 (464)
Q Consensus 381 gtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~----- 455 (464)
|.|.+||+.+.+++.+.. |. .+..++|||||+.|+++..
T Consensus 125 G~l~~wd~~~~~~i~~~~-~~-----------------------------------~~t~~~WsPdGr~~~ta~t~~r~~ 168 (194)
T PF08662_consen 125 GDLEFWDVRKKKKISTFE-HS-----------------------------------DATDVEWSPDGRYLATATTSPRLR 168 (194)
T ss_pred cEEEEEECCCCEEeeccc-cC-----------------------------------cEEEEEEcCCCCEEEEEEecccee
Confidence 889999999999998874 32 5678999999999999874
Q ss_pred -CCcEEecc
Q 012410 456 -HGLVHVWS 463 (464)
Q Consensus 456 -DgtVrlWd 463 (464)
|..++||+
T Consensus 169 ~dng~~Iw~ 177 (194)
T PF08662_consen 169 VDNGFKIWS 177 (194)
T ss_pred ccccEEEEE
Confidence 88899996
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.57 E-value=2.4e-14 Score=146.52 Aligned_cols=150 Identities=13% Similarity=0.175 Sum_probs=130.4
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---------EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---------~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
.++.+++|.+.+.+++++++.|..||||-+..++ .+.+|..|...|..|-|+|+|.+|||++ +++|-||-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5778999988655588889999999999887654 3457899999999999999999999999 99999997
Q ss_pred CC--------C-----c----eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 331 FR--------G-----E----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 331 ~~--------G-----e----~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.. + + ..+.+.+|..- +..++++||+.+++++|. |.++++||+..|+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-----iydL~Ws~d~~~l~s~s~-----------dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-----IYDLAWSPDSNFLVSGSV-----------DNSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccc-----hhhhhccCCCceeeeeec-----------cceEEEEEecccee
Confidence 43 3 1 24588899876 678999999999999998 99999999999999
Q ss_pred EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 394 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 394 l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
++.+.+|.. .|..++++|-.|.++|=|.|+..+
T Consensus 158 ~~~~~dh~~----------------------------------yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 158 LAILDDHEH----------------------------------YVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred Eeecccccc----------------------------------ccceeecchhhhhhhhhccCcccc
Confidence 999999986 889999999999999999888444
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2.3e-14 Score=151.25 Aligned_cols=250 Identities=16% Similarity=0.166 Sum_probs=179.1
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC---cccceeec-cccCceEEEEeCCCC
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS---GFALFESE-SLKWPGFVEFDDVNG 198 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~---~~~l~~~~-~~~~~~~VaFs~pdG 198 (464)
++ .+|.+.|+.+.|.|=--.||+ ++.+ +++++|.++..+... --++++.. |.+.+-+|+.+ ++|
T Consensus 289 tl-~s~~d~ir~l~~~~sep~lit----~sed------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~ 356 (577)
T KOG0642|consen 289 TL-RSHDDCIRALAFHPSEPVLIT----ASED------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNG 356 (577)
T ss_pred ee-ecchhhhhhhhcCCCCCeEEE----eccc------cchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCc
Confidence 44 789999999999998889999 4566 788888883322211 12444422 22223379996 899
Q ss_pred cEEEEecCCCcEEEEeCC-------CCe---E--EEEecCCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEee
Q 012410 199 KVLTYSAQDSIYKVFDLK-------NYT---M--LYSISDKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~-------tg~---~--l~tl~~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~ 258 (464)
+.+-||+.|++|+.|++. .+. + .+..+.+.||.+++|+ +.|+|+++|+...... .+|..
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC
Confidence 999999999999999543 121 1 1223367899999975 6899999999875554 45542
Q ss_pred C-Ccce-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-------CCceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 259 L-LHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 259 ~-~~~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-------~~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
. -+.. -+|+|..-..-.+++...-+--.|.|+.+++-+.++..- ...+.-|+..|.+.+..++- |++|++
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 1 0111 677775421122222333344446677777766655322 13345667789999998988 999999
Q ss_pred EeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 329 WNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 329 Wd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
.|. +|+++.+...|... |.+++|-|+|-+|+|++. |+.|++|.+..-.|+....+|.
T Consensus 516 ~dn~~~~~l~s~~a~~~s-----vtslai~~ng~~l~s~s~-----------d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDS-----VTSLAIDPNGPYLMSGSH-----------DGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ccccccccchheeeccce-----ecceeecCCCceEEeecC-----------Cceeehhhccchheeecccccc
Confidence 999 79999999999887 889999999999999987 9999999999999998887775
No 184
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7e-14 Score=143.51 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=140.8
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
..|||+ .||..||+|+.|+++|||+..+-+.+.. +..|...|+.++|
T Consensus 148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~--------------------------------e~~~~~eV~DL~F 194 (398)
T KOG0771|consen 148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILE--------------------------------EIAHHAEVKDLDF 194 (398)
T ss_pred eEEEEc-CCCCEeeeccccceEEEEecCcchhhhh--------------------------------hHhhcCcccccee
Confidence 389997 8999999999999999999643222111 1112267788889
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-C-CceEEEEEcCCC-----cEEEEEe-CCeEEEEeC---CC----
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-F-MTPSAFIFLYEN-----QLFLTFR-NRTVAVWNF---RG---- 333 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-~-~~v~sv~Fspdg-----qllaS~s-D~TIklWd~---~G---- 333 (464)
+|+ +..|++-+.| ..+|||+.+|-+++.+... . ....++-|+-|+ .++++-. -+.|++||. .|
T Consensus 195 S~d-gk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 195 SPD-GKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred CCC-CcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence 884 3344445777 9999999999988876632 2 234467799888 5555555 567778775 23
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGS 412 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~ 412 (464)
+.-+-..+|.. +.+++.|+||+++|-|+. ||.|=|.+..+=||++-. ++|..
T Consensus 273 ~~~~~~~~~~s------iSsl~VS~dGkf~AlGT~-----------dGsVai~~~~~lq~~~~vk~aH~~---------- 325 (398)
T KOG0771|consen 273 RLRKKIKRFKS------ISSLAVSDDGKFLALGTM-----------DGSVAIYDAKSLQRLQYVKEAHLG---------- 325 (398)
T ss_pred chhhhhhccCc------ceeEEEcCCCcEEEEecc-----------CCcEEEEEeceeeeeEeehhhhee----------
Confidence 33333334433 789999999999999998 999999999999998877 45765
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
-|+.|.|+||.+.+++-|.|.+++|
T Consensus 326 ------------------------~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 326 ------------------------FVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ------------------------eeeeEEEcCCcCcccccccCCceeE
Confidence 8999999999999999999998876
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=1.4e-13 Score=141.02 Aligned_cols=207 Identities=13% Similarity=0.131 Sum_probs=149.8
Q ss_pred EEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 190 FVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 190 ~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
+|.|- +|+. .||||+.|..||+|-+..+.. + .++..|+ .+.+|.+|...+..|.|
T Consensus 18 s~dfq-~n~~~~laT~G~D~~iriW~v~r~~~-----~----------~~~~~V~--------y~s~Ls~H~~aVN~vRf 73 (434)
T KOG1009|consen 18 SVDFQ-KNSLNKLATAGGDKDIRIWKVNRSEP-----G----------GGDMKVE--------YLSSLSRHTRAVNVVRF 73 (434)
T ss_pred EEEec-cCcccceecccCccceeeeeeeecCC-----C----------CCceeEE--------EeecccCCcceeEEEEE
Confidence 78895 7777 999999999999998765331 1 1222333 34456666678899999
Q ss_pred EccCCCeEEEEeCCCeEEEEECC--------C-----C---cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 269 IEQFNEKLLVKQENENLQILDVR--------N-----A---ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~--------t-----g---~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
+| .++.|++|++++.|-||-.. + . .-.+++++|-..++.++|+||++.+++++ |.++++||+
T Consensus 74 ~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 74 SP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred cC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 99 46777778899999999855 3 1 13458899999999999999999999999 999999999
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---EEE--EEccCCCCCC
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLA--KINATNCSPK 405 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~---cl~--tl~gh~~~~~ 405 (464)
.|++++.+.+|... |.-+++-|-++++++=|. |...+...+..-+ |+. .+.+-..
T Consensus 153 ~~G~l~~~~~dh~~y-----vqgvawDpl~qyv~s~s~-----------dr~~~~~~~~~~~~~~~~~~~~m~~~~~--- 213 (434)
T KOG1009|consen 153 HAGQLLAILDDHEHY-----VQGVAWDPLNQYVASKSS-----------DRHPEGFSAKLKQVIKRHGLDIMPAKAF--- 213 (434)
T ss_pred ccceeEeeccccccc-----cceeecchhhhhhhhhcc-----------CcccceeeeeeeeeeeeeeeeEeeeccc---
Confidence 69999999999998 889999999999998765 7655665554432 332 1111111
Q ss_pred cccccCCCCCCcccccccccccccccccccc-CEEEEEEcCCCCEEEEee
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGN 454 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~V~slafspDg~~LaSgs 454 (464)
. ......++....+.|. --.-++|+|||..|++.+
T Consensus 214 ---~-----------~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 214 ---N-----------EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred ---C-----------CCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 0 0011112233334444 334589999999999875
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2e-12 Score=132.22 Aligned_cols=278 Identities=13% Similarity=0.144 Sum_probs=202.5
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe------ccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI------RRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i------~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
.+|..-|..+-||.||+.|++ ++|| +.+++|.+ ++-|+++ +.+.-+..-+.+++|+ ....
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~S----GGDD------~~~~~W~~de~~~~k~~KPI~---~~~~~H~SNIF~L~F~-~~N~ 118 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLAS----GGDD------MHGRVWNVDELMVRKTPKPIG---VMEHPHRSNIFSLEFD-LENR 118 (609)
T ss_pred hhhccccceeeeccCCeEEee----cCCc------ceeeeechHHHHhhcCCCCce---eccCccccceEEEEEc-cCCe
Confidence 458888999999999999999 8999 99999998 3334432 2222233445589997 6778
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEecC----CCEeEEEEeC--------CCceeEEEEEcCCCc-EEEE--EeeCCccee
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKIRS--------SSHVPLKILSIEDGT-VLKV--FYHLLHRNK 264 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~~----~~V~~Vafs~--------s~d~tIklWdi~tG~-~l~t--l~~~~~~~~ 264 (464)
.|-||..|+||.+-|+++.+-|+.+.. +.|+.+..+| +.++-|-+||+...+ ...- +......-.
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 899999999999999999999988762 3577777766 467889999997654 1111 111112337
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcE--EE-----EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cce
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAEL--ME-----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL 335 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~--l~-----~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~ 335 (464)
++-|.|..+..||+.++-+-+-+||++--+- ++ -|..+...-.++.|+|.|..|++-. -..--++|+. -.|
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 8999997667777788889999999876542 11 2222221123577999999999988 6666788994 455
Q ss_pred EEEeccCCC--CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-----------------------
Q 012410 336 VTSFEDHLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----------------------- 390 (464)
Q Consensus 336 l~tl~gH~~--~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t----------------------- 390 (464)
-.--.+|.. +..-|.+.+++|-.|-. ++|||+ +=-|.||.|..
T Consensus 279 ~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-----------~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i 346 (609)
T KOG4227|consen 279 FVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD-----------HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI 346 (609)
T ss_pred eeEeccCCCCcceeeeeeeeeeeeccee-eeccCc-----------ccceEEEecCCCccccCccccCcchhhCchhhee
Confidence 443345443 54556678888887655 889987 88899998742
Q ss_pred CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 391 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 391 G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+-+..|+||.+ -+..|-|+|-...|+|.+-...+|||.
T Consensus 347 ~~~~~VLrGHRS----------------------------------v~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 347 EKELTVLRGHRS----------------------------------VPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cceeEEEecccc----------------------------------cccceeecCCcceEeccchhhheeccc
Confidence 124556777765 677899999999999999999999996
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.51 E-value=2.3e-13 Score=145.25 Aligned_cols=232 Identities=15% Similarity=0.109 Sum_probs=154.8
Q ss_pred eeEEEEEe-ccCCCC-CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCC
Q 012410 161 RSTKIEYI-RRGKPD-SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSS 238 (464)
Q Consensus 161 ~ti~l~~i-~~G~~~-~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~ 238 (464)
..|-|.++ +-|++- +..+.+..+ .-+..+.+++-|.+.||-+..|+.|+||.+..+-+-..
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ng--t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------------- 665 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNG--TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------------- 665 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccC--ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc---------------
Confidence 67888887 566663 223333222 11225777777889999999999999999875443110
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
+-+.-+.|+.|+..+.++.|.|.-.+-|++++.|-||+|||+++++..-.|.||++.+..+||||||+++
T Consensus 666 ----------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 666 ----------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred ----------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcce
Confidence 1122233444456677788888666777889999999999999999999999999999999999999999
Q ss_pred EEEe-CCeEEEEeCC-Cc-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--CeE
Q 012410 319 LTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--GKC 393 (464)
Q Consensus 319 aS~s-D~TIklWd~~-Ge-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t--G~c 393 (464)
||-+ |++|++++-+ ++ .++.=.|-..-. ---|.|-=||.+|+..+.. .++...|-++|.++ +.-
T Consensus 736 AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR----gARi~wacdgr~viv~Gfd-------k~SeRQv~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQPVYEGKGPVGTR----GARILWACDGRIVIVVGFD-------KSSERQVQMYDAQTLDLRP 804 (1012)
T ss_pred eeeecCceEEEeCCCCCCCccccCCCCccCc----ceeEEEEecCcEEEEeccc-------ccchhhhhhhhhhhccCCc
Confidence 9999 9999999983 43 333222222210 1235566689988877761 22356677887643 333
Q ss_pred EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEEeeCCCcEEecc
Q 012410 394 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHGLVHVWS 463 (464)
Q Consensus 394 l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~-LaSgs~DgtVrlWd 463 (464)
|.+.--... | .+.--.|++|.+. ++||-.|.+|.++.
T Consensus 805 l~t~~lDva-p--------------------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 805 LYTQVLDVA-P--------------------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred ceeeeeccc-C--------------------------------ccccccccCCCceEEEecCCCceEEEEE
Confidence 333211100 0 1112368888876 56888899988764
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=1e-11 Score=126.33 Aligned_cols=179 Identities=12% Similarity=0.160 Sum_probs=139.6
Q ss_pred cEEEEecCCCc--EEEEeCCCCeEEEEec-CCCEeEEEEeCC-----CceeEEEEEcCCCcEEEEEeeC-CcceeeEEEE
Q 012410 199 KVLTYSAQDSI--YKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----SHVPLKILSIEDGTVLKVFYHL-LHRNKKVDFI 269 (464)
Q Consensus 199 k~LaSgs~D~t--iKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----~d~tIklWdi~tG~~l~tl~~~-~~~~~~V~F~ 269 (464)
.+||--+.++. .|+-+.+.++-+-.+. ...|.+|++.-. -...|.|.||.+=+.|+|++.. .+...-.||+
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeec
Confidence 35554444544 8888888776553333 467888888642 1123999999999999998843 2344567887
Q ss_pred ccCCCeEEE--Ee-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe-EEEEeC-CCceEEEeccCC
Q 012410 270 EQFNEKLLV--KQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT-VAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 270 ~~~~~~lla--~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T-IklWd~-~Ge~l~tl~gH~ 343 (464)
+..++-.++ ++ .-|.|.|||+.+-+...++..|...+-+++|+|||.+|||+| .|| |||..+ +|+.+..|.--.
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~ 216 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT 216 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence 754344444 55 679999999999999999999999999999999999999999 665 699999 799999998765
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
.. +++.+++|+||+++|++.|. -+||.|+.+.+-
T Consensus 217 ~~---~~IySL~Fs~ds~~L~~sS~-----------TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 217 YP---VSIYSLSFSPDSQFLAASSN-----------TETVHIFKLEKV 250 (391)
T ss_pred ee---eEEEEEEECCCCCeEEEecC-----------CCeEEEEEeccc
Confidence 54 56999999999999998875 899999988653
No 189
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=5.4e-12 Score=132.65 Aligned_cols=197 Identities=11% Similarity=0.006 Sum_probs=133.9
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
...|.+||...+.. +.+. ...|.+.+|||+ .+..|.+||+++|+... +......+..++|+| ++
T Consensus 181 ~~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG 257 (435)
T PRK05137 181 IKRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSP-DG 257 (435)
T ss_pred ceEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECC-CC
Confidence 45788889755443 3333 567999999885 23579999999998743 333334567889999 46
Q ss_pred CeEEE-EeCCCe--EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC--eEEEEeCCCceEEEeccCCCCc
Q 012410 274 EKLLV-KQENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 346 (464)
Q Consensus 274 ~~lla-~s~D~t--IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~--TIklWd~~Ge~l~tl~gH~~~~ 346 (464)
.+|+. .+.|+. |.+||+.++++.+ +..+........|+|||+.|+..+ ++ .|-+||.+|..++.+..+...
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~- 335 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR- 335 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc-
Confidence 67765 456655 6677999998755 444555566789999999888766 33 577778865555555544333
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
+....|||||+.||..+. .+.+..|.+||+.+ ...+.+.. ..
T Consensus 336 ----~~~~~~SpdG~~ia~~~~--------~~~~~~i~~~d~~~-~~~~~lt~-~~------------------------ 377 (435)
T PRK05137 336 ----YSTPVWSPRGDLIAFTKQ--------GGGQFSIGVMKPDG-SGERILTS-GF------------------------ 377 (435)
T ss_pred ----ccCeEECCCCCEEEEEEc--------CCCceEEEEEECCC-CceEeccC-CC------------------------
Confidence 456889999999987764 11245788999744 44444421 11
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
.+.++.|||||+.|+-.+.+
T Consensus 378 ----------~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 378 ----------LVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ----------CCCCCeECCCCCEEEEEEcc
Confidence 34567899999998765543
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.50 E-value=3.8e-12 Score=138.01 Aligned_cols=249 Identities=11% Similarity=0.068 Sum_probs=176.0
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE--EEEec------CCCEeEEE
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------DKHVQEIK 233 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~--l~tl~------~~~V~~Va 233 (464)
.+.||++..- . .-...+.. ..-+-.++|++-+..+||.|..+|.|=|||+..+.. ...++ ...|..|.
T Consensus 223 ~~~vW~~~~p-~-~Pe~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 223 VLLVWSLKNP-N-TPELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred eEEEEecCCC-C-CceEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 6788887543 1 11112222 122337999988899999999999999999987665 22222 24455555
Q ss_pred E----------eCCCceeEEEEEcCC------CcEEEEEe------eCCcceeeEEEEccCCCeEEEEeCCCeEEE---E
Q 012410 234 I----------RSSSHVPLKILSIED------GTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQI---L 288 (464)
Q Consensus 234 f----------s~s~d~tIklWdi~t------G~~l~tl~------~~~~~~~~V~F~~~~~~~lla~s~D~tIkI---W 288 (464)
. |.+.|+.|+.|++.. +.++.+.. ...+.+..++|.+-++..+++|.++|.|.- +
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 4 235899999998753 22333333 123456899999977788999999999975 3
Q ss_pred ECCCCc-----EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCC
Q 012410 289 DVRNAE-----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQ 360 (464)
Q Consensus 289 Dv~tg~-----~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg 360 (464)
+.+.+. .+.+...|-+.|+++-|+|-+..+..++ |-|||||.- .-..+..+..|... |.++++||--
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~-----v~~vaWSptr 453 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY-----VTDVAWSPTR 453 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce-----eeeeEEcCcC
Confidence 433333 2336677889999999999998777766 999999985 35677788888877 7899999976
Q ss_pred C-EEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccC
Q 012410 361 D-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 437 (464)
Q Consensus 361 ~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 437 (464)
- .+|++.. ||.|.|||+..-.+ +.+.+-+. ..
T Consensus 454 pavF~~~d~-----------~G~l~iWDLl~~~~~Pv~s~~~~~----------------------------------~~ 488 (555)
T KOG1587|consen 454 PAVFATVDG-----------DGNLDIWDLLQDDEEPVLSQKVCS----------------------------------PA 488 (555)
T ss_pred ceEEEEEcC-----------CCceehhhhhccccCCcccccccc----------------------------------cc
Confidence 4 4455543 99999999865332 22222221 15
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 438 ITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 438 V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..-+.++|+|+.|+.|...|++++|+.
T Consensus 489 l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 489 LTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred cceeecCCCCcEEEEecCCCcEEEEEc
Confidence 567899999999999999999999874
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.48 E-value=1.6e-12 Score=128.94 Aligned_cols=219 Identities=18% Similarity=0.178 Sum_probs=151.6
Q ss_pred eEEeeecccc---------cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccc
Q 012410 109 VCAAFSRETN---------RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (464)
Q Consensus 109 ~~~~~~~~~g---------~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l 179 (464)
-.++|++... ++++.|...+-..|.+|-|.||++.||++- + ..|-+|++..+.-.. ..+
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-----d------n~i~l~~l~ess~~v-aev 161 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-----D------NNIVLWSLDESSKIV-AEV 161 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-----c------CceEEEEcccCcchh-eee
Confidence 4677875543 245556433445789999999999999932 3 588899987776521 011
Q ss_pred eeecccc---CceEEEEeC-CCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEE
Q 012410 180 FESESLK---WPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 180 ~~~~~~~---~~~~VaFs~-pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~t 255 (464)
...+... +-.+-++|+ -||..+++ ..|+|+..||+.|-++.+. |++
T Consensus 162 ~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~s-----------------------I~d------ 211 (370)
T KOG1007|consen 162 LSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNS-----------------------IED------ 211 (370)
T ss_pred cccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcc-----------------------hhh------
Confidence 1111111 111455653 47877775 4688898998877555333 332
Q ss_pred EeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEEEEeC
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIklWd~ 331 (464)
-|.++++.++|.|. -+.+|+ +++|+.|||||.+. ...++.+.+|..+||+|.|.|. .|+++|++ |..|-||..
T Consensus 212 --AHgq~vrdlDfNpn-kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 212 --AHGQRVRDLDFNPN-KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred --hhcceeeeccCCCC-ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 23477888888884 355555 68999999999887 4578999999999999999975 68899998 999999973
Q ss_pred ---CC---------------------------ceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCC
Q 012410 332 ---RG---------------------------ELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 332 ---~G---------------------------e~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~D 380 (464)
.. ..+.+++.|... |..+++|. |-=++||-|. |
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-----VY~~aWSsadPWiFASLSY-----------D 352 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-----VYALAWSSADPWIFASLSY-----------D 352 (370)
T ss_pred cccccccccccccccccCcchhhHHhcccccccccccccccccc-----eEEEeeccCCCeeEEEecc-----------C
Confidence 11 125588889887 88899987 4445666665 9
Q ss_pred CeEEEEeC
Q 012410 381 GSINVSSI 388 (464)
Q Consensus 381 gtIklWdi 388 (464)
|.+-|-.+
T Consensus 353 GRviIs~V 360 (370)
T KOG1007|consen 353 GRVIISSV 360 (370)
T ss_pred ceEEeecC
Confidence 98888765
No 192
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.2e-13 Score=152.80 Aligned_cols=266 Identities=12% Similarity=0.122 Sum_probs=193.0
Q ss_pred CCccccccchhhhhhccccceeeeecCCCCCcccchhhhccccceEEEEec--c----ceeehhccCCeEEeeeccc---
Q 012410 47 RDRAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--R----DIVFALAHSGVCAAFSRET--- 117 (464)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~s~v~~~~~a--g----~~l~~l~~~g~~~~~~~~~--- 117 (464)
-+.+|++...-|.|+ +|--|++..++. -..+.......+.... | -+||.+.+||.|-+|+...
T Consensus 31 ~D~sfst~~slEife-------ld~~~~~~dlk~-~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~ 102 (1049)
T KOG0307|consen 31 FDASFSTSASLEIFE-------LDFSDESSDLKP-VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA 102 (1049)
T ss_pred cccccccccccceee-------ecccCccccccc-cccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc
Confidence 345565555555543 243444433333 1222333344444433 2 2699999999999998554
Q ss_pred c---cEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEE
Q 012410 118 N---RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEF 193 (464)
Q Consensus 118 g---~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaF 193 (464)
| ..|.+++. |..-|+.+-||++.. .||+ |.++ ..|-|||+..=+.-.+.. ......-+-+|++
T Consensus 103 ~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLAS----Ga~~------geI~iWDlnn~~tP~~~~--~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 103 NASEEVLATKSK-HTGPVLGLDFNPFQGNLLAS----GADD------GEILIWDLNKPETPFTPG--SQAPPSEIKCLSW 169 (1049)
T ss_pred CcchHHHhhhcc-cCCceeeeeccccCCceeec----cCCC------CcEEEeccCCcCCCCCCC--CCCCcccceEecc
Confidence 2 25666755 777899999999977 8888 7777 899999986533321111 1001112226777
Q ss_pred eCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC----CCEeEEEEeCC------------CceeEEEEEcC-CCcEEEEE
Q 012410 194 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKIRSS------------SHVPLKILSIE-DGTVLKVF 256 (464)
Q Consensus 194 s~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~----~~V~~Vafs~s------------~d~tIklWdi~-tG~~l~tl 256 (464)
+--...+|||++.++.+-||||+.-+.+-.+++ -.+..|+++|+ ..-.|++||+. .-..++++
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 766678999999999999999998776655542 34778999873 22479999965 45678899
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCCC
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRG 333 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~G 333 (464)
++|...+-++++.++|+..+|+++.|+.|-+||..|||-+-.+....+|+..|-|.|..- +||.++ ||.|.|..+.|
T Consensus 250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 988888999999998878888899999999999999999999998889999999999887 888888 99999999853
No 193
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.6e-11 Score=128.31 Aligned_cols=244 Identities=11% Similarity=0.135 Sum_probs=146.8
Q ss_pred EEEeccceeehhccCC------eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 93 EIVAARDIVFALAHSG------VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 93 ~~~~ag~~l~~l~~~g------~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+++...+++...... .+.++| .+|.....+.. +.+.+.+..|||||+.|+.+|.. ... ..+.++
T Consensus 158 ~g~f~~~ia~v~~~~~~~~~~~~l~~~d-~~g~~~~~l~~-~~~~~~~p~wSpDG~~la~~s~~-~~~------~~l~~~ 228 (430)
T PRK00178 158 KGAFSTRILYVTAERFSVNTRYTLQRSD-YDGARAVTLLQ-SREPILSPRWSPDGKRIAYVSFE-QKR------PRIFVQ 228 (430)
T ss_pred CccceeeEEEEEeeCCCCCcceEEEEEC-CCCCCceEEec-CCCceeeeeECCCCCEEEEEEcC-CCC------CEEEEE
Confidence 4566666666543322 355556 45666666633 56678999999999999886521 122 478889
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe-cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg-s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
++.+|+.. ++... -++....+|| |||+.|+.. +.++. ..|.+|
T Consensus 229 ~l~~g~~~---~l~~~--~g~~~~~~~S-pDG~~la~~~~~~g~------------------------------~~Iy~~ 272 (430)
T PRK00178 229 NLDTGRRE---QITNF--EGLNGAPAWS-PDGSKLAFVLSKDGN------------------------------PEIYVM 272 (430)
T ss_pred ECCCCCEE---EccCC--CCCcCCeEEC-CCCCEEEEEEccCCC------------------------------ceEEEE
Confidence 99888752 12211 1334468997 899988854 33331 123344
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CC--CeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCCcEEEEE
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D--~tIkIWDv~tg~~l~~l-~gh~~~v~sv~FspdgqllaS~ 321 (464)
|+++|+..+ +..+......+.|+| ++.+|+..+ .+ ..|.++|+.+|+..+.. .++ ......|||||+.|+-.
T Consensus 273 d~~~~~~~~-lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~--~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 273 DLASRQLSR-VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN--YNARPRLSADGKTLVMV 348 (430)
T ss_pred ECCCCCeEE-cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEE
Confidence 444443322 221112335567777 456666655 33 46777898899865543 232 23356799999999877
Q ss_pred e--CC--eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 322 R--NR--TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 322 s--D~--TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+ ++ .|.+||+ +|+. +.+.. ... ..+..|||||+.|+-.+.. +....|.+.++ +|+..+.
T Consensus 349 ~~~~~~~~l~~~dl~tg~~-~~lt~-~~~-----~~~p~~spdg~~i~~~~~~--------~g~~~l~~~~~-~g~~~~~ 412 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSV-RILTD-TSL-----DESPSVAPNGTMLIYATRQ--------QGRGVLMLVSI-NGRVRLP 412 (430)
T ss_pred EccCCceEEEEEECCCCCE-EEccC-CCC-----CCCceECCCCCEEEEEEec--------CCceEEEEEEC-CCCceEE
Confidence 6 33 5788998 4654 44432 222 2256899999999887651 12355778886 6666666
Q ss_pred EccCC
Q 012410 397 INATN 401 (464)
Q Consensus 397 l~gh~ 401 (464)
|..+.
T Consensus 413 l~~~~ 417 (430)
T PRK00178 413 LPTAQ 417 (430)
T ss_pred CcCCC
Confidence 65443
No 194
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=5.2e-12 Score=132.83 Aligned_cols=195 Identities=13% Similarity=0.115 Sum_probs=128.6
Q ss_pred CcEEEEeCCCCeEEEEec--CCCEeEEEEeCCC-----------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC
Q 012410 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKIRSSS-----------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s~-----------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~ 274 (464)
..+.+||. +|.....+. ...+.+.+|||++ ...|.+||+.+|+.... ......+..++|+| ++.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SP-DG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSP-DGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECC-CCC
Confidence 35666676 455444333 4568888888842 23599999999987543 22223456899999 466
Q ss_pred eEEE-EeCCCeEEEE--ECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC--CCceEE--EeccCCCC
Q 012410 275 KLLV-KQENENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVT--SFEDHLLW 345 (464)
Q Consensus 275 ~lla-~s~D~tIkIW--Dv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~--~Ge~l~--tl~gH~~~ 345 (464)
+|+. .+.|+..+|| |+.+++ ++.+..|.....+..|||||+.|+..+ ++...||.+ .|...+ ++.++.
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~-- 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY-- 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC--
Confidence 7765 5678887776 455565 444555555566788999999888666 567888865 333333 344432
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
..+.+|||||++||..+. .+.+..|.+||+.+|+.. .+..+.
T Consensus 330 -----~~~~~~SpDG~~Ia~~s~--------~~g~~~I~v~d~~~g~~~-~lt~~~------------------------ 371 (427)
T PRK02889 330 -----NTSPRISPDGKLLAYISR--------VGGAFKLYVQDLATGQVT-ALTDTT------------------------ 371 (427)
T ss_pred -----cCceEECCCCCEEEEEEc--------cCCcEEEEEEECCCCCeE-EccCCC------------------------
Confidence 235789999999997764 112347999999888754 343221
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
...++.|+|||+.|+.++.++
T Consensus 372 -----------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 372 -----------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -----------CccCceECCCCCEEEEEEecC
Confidence 234678999999988877654
No 195
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1e-12 Score=131.55 Aligned_cols=156 Identities=15% Similarity=0.300 Sum_probs=124.7
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
..++.|++- |..|++|..||.|-|||+.|...-+++.+|...|.+++||+||+.|+|+| |..|++||+ .|.|++.+.
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 578889884 55666688999999999999998899999999999999999999999999 999999999 699877554
Q ss_pred cCCC-----CcC----CC------------------------------C--eeEEEECCCCCEEEEEecCCCccccccCC
Q 012410 341 DHLL-----WHP----DC------------------------------N--TNNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 341 gH~~-----~~~----~~------------------------------~--v~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
=... ||| .| + -....|.+-|++|++|-.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----------- 173 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----------- 173 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC-----------
Confidence 1110 000 00 0 001236666788887764
Q ss_pred CCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 380 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 380 DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
.|.+-+.|..|-+|++.++--+- +.|.++-|+..|..|+.-..|++|
T Consensus 174 KGkllv~~a~t~e~vas~rits~---------------------------------~~IK~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITSV---------------------------------QAIKQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred cceEEEEecchheeeeeeeechh---------------------------------eeeeEEEEeccCcEEEEecCCceE
Confidence 79999999999999998866541 278899999999999999999999
Q ss_pred Eecc
Q 012410 460 HVWS 463 (464)
Q Consensus 460 rlWd 463 (464)
|.++
T Consensus 221 R~ye 224 (405)
T KOG1273|consen 221 RTYE 224 (405)
T ss_pred EEEe
Confidence 9986
No 196
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.4e-11 Score=130.80 Aligned_cols=245 Identities=10% Similarity=0.096 Sum_probs=146.4
Q ss_pred EEEeccceeehhccCC-----eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 93 EIVAARDIVFALAHSG-----VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 93 ~~~~ag~~l~~l~~~g-----~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
.++|...+.+.....+ .+.+.| .+|.....+.. +.+.+.+..|||||+.|+.++.. ... ..+.+++
T Consensus 178 ~g~f~~riayv~~~~~~~~~~~l~i~d-~dG~~~~~l~~-~~~~~~~p~wSPDG~~La~~s~~-~g~------~~L~~~d 248 (448)
T PRK04792 178 RGAFLTRIAYVVVNDKDKYPYQLMIAD-YDGYNEQMLLR-SPEPLMSPAWSPDGRKLAYVSFE-NRK------AEIFVQD 248 (448)
T ss_pred CccccCEEEEEEeeCCCCCceEEEEEe-CCCCCceEeec-CCCcccCceECCCCCEEEEEEec-CCC------cEEEEEE
Confidence 3555555555443333 344445 45655555533 55678899999999999886622 112 4688889
Q ss_pred eccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe-cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEE
Q 012410 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILS 246 (464)
Q Consensus 168 i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg-s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWd 246 (464)
+.+|+.. ++... -+.....+|| |||+.|+.. +.++.. .|.++|
T Consensus 249 l~tg~~~---~lt~~--~g~~~~~~wS-PDG~~La~~~~~~g~~------------------------------~Iy~~d 292 (448)
T PRK04792 249 IYTQVRE---KVTSF--PGINGAPRFS-PDGKKLALVLSKDGQP------------------------------EIYVVD 292 (448)
T ss_pred CCCCCeE---EecCC--CCCcCCeeEC-CCCCEEEEEEeCCCCe------------------------------EEEEEE
Confidence 8888752 12111 1233478997 899988864 334321 234445
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCC--eEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~--tIkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s 322 (464)
+++|+..+ +..+......++|+| ++.+|+..+ .++ .|.++|+.+|+..+. ..++. ..+.+|+|||+.|+-.+
T Consensus 293 l~tg~~~~-lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~--~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 293 IATKALTR-ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ--NLGGSITPDGRSMIMVN 368 (448)
T ss_pred CCCCCeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC--CcCeeECCCCCEEEEEE
Confidence 55554322 222113345677877 456666654 333 566678888886554 33332 34568999999987766
Q ss_pred --CCeEEE--EeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 323 --NRTVAV--WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 323 --D~TIkl--Wd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
++..+| +|+. |+. +.+.... + ..+..|+|||+.|+-.+.. +....+.+++. +|+..+.+
T Consensus 369 ~~~g~~~I~~~dl~~g~~-~~lt~~~-~-----d~~ps~spdG~~I~~~~~~--------~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 369 RTNGKFNIARQDLETGAM-QVLTSTR-L-----DESPSVAPNGTMVIYSTTY--------QGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred ecCCceEEEEEECCCCCe-EEccCCC-C-----CCCceECCCCCEEEEEEec--------CCceEEEEEEC-CCCceEEC
Confidence 454455 6774 654 4444331 2 2345799999999876641 11345788886 88888888
Q ss_pred ccCCC
Q 012410 398 NATNC 402 (464)
Q Consensus 398 ~gh~~ 402 (464)
..+..
T Consensus 433 ~~~~g 437 (448)
T PRK04792 433 PAGQG 437 (448)
T ss_pred cCCCC
Confidence 66543
No 197
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=1e-11 Score=117.96 Aligned_cols=165 Identities=16% Similarity=0.259 Sum_probs=107.0
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcc-cceeeEEEEEecc-CCCCCcccceeeccccCceEEEEeCCCCcEEE--EecCCC
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSS-LKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLT--YSAQDS 208 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~-L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~La--Sgs~D~ 208 (464)
-.+.++|.|+.|++...-..+. +. -.-....|+.++. +.......+-. -+.+..|+|+ |+|+.+| +|..+.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~-~~ks~~~~~~l~~~~~~~~~~~~i~l~~---~~~I~~~~Ws-P~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDK-SGKSYYGEFELFYLNEKNIPVESIELKK---EGPIHDVAWS-PNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeecc-CcceEEeeEEEEEEecCCCccceeeccC---CCceEEEEEC-cCCCEEEEEEccCCc
Confidence 3578889998888744211111 10 0013456666632 23222222222 1335589997 8999864 455677
Q ss_pred cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe---CCCeE
Q 012410 209 IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENL 285 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s---~D~tI 285 (464)
+|.|||++ ++.++++.. .....|.|+|. |..++.++ ..|.|
T Consensus 84 ~v~lyd~~-~~~i~~~~~----------------------------------~~~n~i~wsP~-G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFGT----------------------------------QPRNTISWSPD-GRFLVLAGFGNLNGDL 127 (194)
T ss_pred ccEEEcCc-ccEeEeecC----------------------------------CCceEEEECCC-CCEEEEEEccCCCcEE
Confidence 88888874 444444432 23345667663 45666665 34779
Q ss_pred EEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-------CCeEEEEeCCCceEEEec
Q 012410 286 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVTSFE 340 (464)
Q Consensus 286 kIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-------D~TIklWd~~Ge~l~tl~ 340 (464)
++||+++.+++...... .+..++|||||+.|+++. |..++||+++|+++....
T Consensus 128 ~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 128 EFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 99999999999887643 367899999999999974 689999999999987553
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.3e-11 Score=120.44 Aligned_cols=219 Identities=12% Similarity=0.120 Sum_probs=140.1
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe---ccCC--CCCccccee-eccccCceEEEEeCCCCcEEEEec
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI---RRGK--PDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i---~~G~--~~~~~~l~~-~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
|.+-+.+|-+++|+..+.|+ ++-+-.+ ..|. ..+..+.+. ..+-+.+..++|. | ..|.||+
T Consensus 13 vf~qa~sp~~~~l~agn~~G----------~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d-~~Lls~g 79 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFG----------DIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--D-DFLLSGG 79 (325)
T ss_pred HHHHhhCCcceEEEEecCCC----------eEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--h-hheeecc
Confidence 44556677777777755333 3333333 1111 111123333 2233555589996 3 4777765
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeE
Q 012410 206 QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENL 285 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tI 285 (464)
|+.||=|.-+ +++.++..+..|++..+-- +| .++ ...+...-..|+.|. ++.++.|+.|
T Consensus 80 -dG~V~gw~W~--E~~es~~~K~lwe~~~P~~-----------~~----~~e--vPeINam~ldP~enS-i~~AgGD~~~ 138 (325)
T KOG0649|consen 80 -DGLVYGWEWN--EEEESLATKRLWEVKIPMQ-----------VD----AVE--VPEINAMWLDPSENS-ILFAGGDGVI 138 (325)
T ss_pred -CceEEEeeeh--hhhhhccchhhhhhcCccc-----------cC----ccc--CCccceeEeccCCCc-EEEecCCeEE
Confidence 5999999754 2333344455555554321 11 000 134455555565444 4444489999
Q ss_pred EEEECCCCcEEEEcccCCCceEEEEE-cCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC---CcCCCCeeEEEECCC
Q 012410 286 QILDVRNAELMEVSRTEFMTPSAFIF-LYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL---WHPDCNTNNIYITSD 359 (464)
Q Consensus 286 kIWDv~tg~~l~~l~gh~~~v~sv~F-spdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~---~~~~~~v~svafSpD 359 (464)
.-||+++|+..++++||++.+-+++- +..+| ++||+ |||+||||. +++|+++++-..+ -.|+-.-|--|.--|
T Consensus 139 y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ 217 (325)
T KOG0649|consen 139 YQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN 217 (325)
T ss_pred EEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc
Confidence 99999999999999999999999998 55565 66888 999999999 7999999884332 111111234556667
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.+.|++|. -..+-||++.+-+|..+|
T Consensus 218 edWlvCGg------------Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 218 EDWLVCGG------------GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred CceEEecC------------CCceeEEeccCCCceEEE
Confidence 88999886 467889999998887776
No 199
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.9e-11 Score=126.75 Aligned_cols=248 Identities=10% Similarity=0.097 Sum_probs=145.2
Q ss_pred EEEEeccceeehhccCC--------eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEE--EEeecCCCCccccee
Q 012410 92 IEIVAARDIVFALAHSG--------VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT--VSVYASDNFSSLKCR 161 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~~g--------~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~s--vSa~~sddfs~L~~~ 161 (464)
..+++...++++...-+ .+.+.| .+|.....|.. ..+.+.+=.|||||+.++. +| +.... .
T Consensus 141 ~~g~~~~~iayv~~~~~~~~~~~~~~l~~~d-~dG~~~~~lt~-~~~~~~sP~wSPDG~~~~~~y~S-~~~g~------~ 211 (428)
T PRK01029 141 VPGISSGKIIFSLSTTNSDTELKQGELWSVD-YDGQNLRPLTQ-EHSLSITPTWMHIGSGFPYLYVS-YKLGV------P 211 (428)
T ss_pred CCccccCEEEEEEeeCCcccccccceEEEEc-CCCCCceEccc-CCCCcccceEccCCCceEEEEEE-ccCCC------c
Confidence 34566566666654322 344444 34555555644 3455778899999987554 33 22222 4
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC-CcEEEEeCCCCeEEEEecCCCEeEEEEeCCCce
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHV 240 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D-~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~ 240 (464)
++.+.++..|+.. ++-. .-+.....+|| |||+.||..+.. +.. +.
T Consensus 212 ~I~~~~l~~g~~~---~lt~--~~g~~~~p~wS-PDG~~Laf~s~~~g~~----------------------------di 257 (428)
T PRK01029 212 KIFLGSLENPAGK---KILA--LQGNQLMPTFS-PRKKLLAFISDRYGNP----------------------------DL 257 (428)
T ss_pred eEEEEECCCCCce---Eeec--CCCCccceEEC-CCCCEEEEEECCCCCc----------------------------ce
Confidence 7778888877652 1111 11333368897 999999976531 110 11
Q ss_pred eEEEEEcCC---CcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEEC--CC-CcEEEEcccCCCceEEEEEcC
Q 012410 241 PLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RN-AELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 241 tIklWdi~t---G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv--~t-g~~l~~l~gh~~~v~sv~Fsp 313 (464)
.+.+|++.+ |+..+.+.+.......++|+| ++.+|+..+ .++..+||.+ .. +...+.+..+...+....|||
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 122333332 222222222112335678888 456677655 5776677643 32 333444554545667888999
Q ss_pred CCcEEEEEe-C---CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 314 ENQLFLTFR-N---RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 314 dgqllaS~s-D---~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
||+.|+..+ + ..|.+||+ +|++. .+...... +.+..|+|||+.|+-.+. ......|.+||+
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~-----~~~p~wSpDG~~L~f~~~--------~~g~~~L~~vdl 402 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPEN-----KESPSWAIDSLHLVYSAG--------NSNESELYLISL 402 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCC-----ccceEECCCCCEEEEEEC--------CCCCceEEEEEC
Confidence 999988765 2 37999999 56654 44433222 567899999998875432 123578999999
Q ss_pred CCCeEEEEE
Q 012410 389 LTGKCLAKI 397 (464)
Q Consensus 389 ~tG~cl~tl 397 (464)
.+|+.....
T Consensus 403 ~~g~~~~Lt 411 (428)
T PRK01029 403 ITKKTRKIV 411 (428)
T ss_pred CCCCEEEee
Confidence 888765444
No 200
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=4.6e-11 Score=123.19 Aligned_cols=194 Identities=11% Similarity=0.107 Sum_probs=129.7
Q ss_pred ceEEEEeCCCCcEEEEecCC---CcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----------CceeEEEEEcCCCcE
Q 012410 188 PGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----------SHVPLKILSIEDGTV 252 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D---~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----------~d~tIklWdi~tG~~ 252 (464)
..+.+|| |||+.||+.+.+ .+|.+||+.+|+...... ...+..++|+|+ ....|.+||+.+|+.
T Consensus 192 ~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 192 ILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred eecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence 3478897 899999998764 489999999987543222 344566777774 234588999998865
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEe-CCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC---e
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR---T 325 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~---T 325 (464)
.+ +..+......++|+| ++.+|+..+ .++ .|.++|+.+++.... ..+...+..++|+|||++|+..+ +. .
T Consensus 271 ~~-l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 271 TR-LTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TFRGGYNASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred EE-CCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence 44 332223345778888 566777665 333 678889888876543 33445667788999999999888 65 7
Q ss_pred EEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 326 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 326 IklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
|.+||+.+...+.+..+.. .....|+|||+.|+..+.. +....+.+.+ .+|+....+..+
T Consensus 348 i~~~d~~~~~~~~l~~~~~------~~~p~~spdg~~l~~~~~~--------~~~~~l~~~~-~~g~~~~~~~~~ 407 (417)
T TIGR02800 348 IAVMDLDGGGERVLTDTGL------DESPSFAPNGRMILYATTR--------GGRGVLGLVS-TDGRFRARLPLG 407 (417)
T ss_pred EEEEeCCCCCeEEccCCCC------CCCceECCCCCEEEEEEeC--------CCcEEEEEEE-CCCceeeECCCC
Confidence 8999984333344443321 2356899999999888751 1123466666 467766666443
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=5.3e-11 Score=131.02 Aligned_cols=312 Identities=10% Similarity=0.111 Sum_probs=197.1
Q ss_pred ccceeehhccCCeEEeeeccccc---EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC--
Q 012410 97 ARDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG-- 171 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~---~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G-- 171 (464)
.|++.. ..++.-+..|.+..+. .....+..|...+.++++||++.++|+ +..+ +.|.+|. .-|
T Consensus 171 ~ge~~~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa----~d~d------GrI~vw~-d~~~~ 238 (792)
T KOG1963|consen 171 SGEFKG-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAA----GDSD------GRILVWR-DFGSS 238 (792)
T ss_pred CceEEE-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEE----eccC------CcEEEEe-ccccc
Confidence 355543 3444456666666543 122244556767899999999999988 3333 3488886 334
Q ss_pred CCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------Ccee
Q 012410 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVP 241 (464)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~t 241 (464)
+-..+..++.. |-.-+++++|+ +||-+|.||+..+-.-+|.+.|++ -+-|+ +..|..+.+||+ .|..
T Consensus 239 ~~~~t~t~lHW-H~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 239 DDSETCTLLHW-HHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred cccccceEEEe-cccccceeEEe-cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence 11112222221 11224589998 899999999999999999999998 33344 678999999985 5677
Q ss_pred EEEEEcCCCcEEEEEeeCCcc-----------eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc---c-------
Q 012410 242 LKILSIEDGTVLKVFYHLLHR-----------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---R------- 300 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~-----------~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l---~------- 300 (464)
|.|....+=+...+..|.... ..-|.+.|. .+.++--+.-++||++|+.+-+.+..+ .
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~ 394 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD 394 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence 788777666666666543222 134555562 356666789999999999997754322 1
Q ss_pred -cCCCceEEEEEcCCCcEEEEEe---------CC--eEEEEeCCCceEE-Eec-cCCCCcCCCCeeEEEECCCCC-EEEE
Q 012410 301 -TEFMTPSAFIFLYENQLFLTFR---------NR--TVAVWNFRGELVT-SFE-DHLLWHPDCNTNNIYITSDQD-LIIS 365 (464)
Q Consensus 301 -gh~~~v~sv~FspdgqllaS~s---------D~--TIklWd~~Ge~l~-tl~-gH~~~~~~~~v~svafSpDg~-~LaS 365 (464)
-+...+.+++++-.|+.++|.- |+ .+|.|-..+.... .|. .=..+|.+|-|-.+.++|-.. ..++
T Consensus 395 ~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 395 VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT 474 (792)
T ss_pred ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence 1234578889998899999853 33 4688876433211 111 112234444455555555555 6777
Q ss_pred EecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc---ccccCEEEEE
Q 012410 366 YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG---EALEDITSLF 442 (464)
Q Consensus 366 gs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~V~sla 442 (464)
++. ||.+|||-+..-+-+ ++...+|.-+. .+-..+.+++
T Consensus 475 a~~-----------dg~~KiW~~~~~~n~---------------------------~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 475 ASV-----------DGDFKIWVFTDDSNI---------------------------YKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred ecc-----------CCeEEEEEEeccccc---------------------------CcCccceEEeeeeccccCcccchh
Confidence 765 999999976321111 11111111111 2223789999
Q ss_pred EcCCCCEEEEeeCCCcEEecc
Q 012410 443 YDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 443 fspDg~~LaSgs~DgtVrlWd 463 (464)
||.|| .|.+.|.|++|.+||
T Consensus 517 fs~dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 517 FSQDG-SLLAVSFDDTITIWD 536 (792)
T ss_pred hcCCC-cEEEEecCCEEEEec
Confidence 99999 566678899999998
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.1e-11 Score=132.87 Aligned_cols=259 Identities=14% Similarity=0.125 Sum_probs=175.3
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC---cEEEEecCCC
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG---KVLTYSAQDS 208 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG---k~LaSgs~D~ 208 (464)
-.--.||+|++.+.. ..++ +++|....||++...+..++.. .-++.+. |.. -++..++.||
T Consensus 19 ~~~avfSnD~k~l~~----~~~~-------~V~VyS~~Tg~~i~~l~~~~a~----l~s~~~~-~~~~~~~~~~~~sl~G 82 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFL----CTGN-------FVKVYSTATGECITSLEDHTAP----LTSVIVL-PSSENANYLIVCSLDG 82 (792)
T ss_pred ecccccccCCcEEEE----eeCC-------EEEEEecchHhhhhhcccccCc----cceeeec-CCCccceEEEEEecCc
Confidence 344568999999988 4444 9999999999997655544432 2267775 333 3566899999
Q ss_pred cEEEEeCCCCeEEEEec-CCCEeEEEEeC---CCceeEEEEEcCCCcEEEEEeeC----------------------Ccc
Q 012410 209 IYKVFDLKNYTMLYSIS-DKHVQEIKIRS---SSHVPLKILSIEDGTVLKVFYHL----------------------LHR 262 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~-~~~V~~Vafs~---s~d~tIklWdi~tG~~l~tl~~~----------------------~~~ 262 (464)
+|++||-..+.+++++. +-.|....+.| +.+.-+.+| .++-..+.++..+ .+.
T Consensus 83 ~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s-~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~ 161 (792)
T KOG1963|consen 83 TIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVS-VEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ 161 (792)
T ss_pred cEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEee-cccceeeeecccccccceeeeEeeeccccchhhhhhhc
Confidence 99999999999999987 44566665544 111111111 1111111111100 000
Q ss_pred -eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-----EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCC--
Q 012410 263 -NKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG-- 333 (464)
Q Consensus 263 -~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-----~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~G-- 333 (464)
-+.|.+.+- +.+..--.+..+.+|++.++. .. .-..|+.....++|||.++.+|++- ||.|.+|.--|
T Consensus 162 ~~~~I~~~~~--ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~ 238 (792)
T KOG1963|consen 162 EPKSIVDNNS--GEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS 238 (792)
T ss_pred CCccEEEcCC--ceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc
Confidence 134444331 233333356678899998866 22 2245666678999999999999999 99999997433
Q ss_pred ---ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 334 ---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 334 ---e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
+--+.|.=|... |++++||+||.+|.||+. .|-+-+|.+.|++ ++|-+--+
T Consensus 239 ~~~~t~t~lHWH~~~-----V~~L~fS~~G~~LlSGG~-----------E~VLv~Wq~~T~~--kqfLPRLg-------- 292 (792)
T KOG1963|consen 239 DDSETCTLLHWHHDE-----VNSLSFSSDGAYLLSGGR-----------EGVLVLWQLETGK--KQFLPRLG-------- 292 (792)
T ss_pred cccccceEEEecccc-----cceeEEecCCceEeeccc-----------ceEEEEEeecCCC--cccccccC--------
Confidence 223455555544 899999999999999987 8999999999988 44422111
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
..|..+.+|||+..-+..-+|..|+|
T Consensus 293 -------------------------s~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 293 -------------------------SPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred -------------------------CeeEEEEEcCCCCeEEEEecCceEEE
Confidence 17999999999999888889999887
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.44 E-value=8.7e-11 Score=122.11 Aligned_cols=299 Identities=13% Similarity=0.119 Sum_probs=186.4
Q ss_pred ccee-ehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIV-FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l-~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
+|++ .+...+|.+.+.|..+++.+..+..+. ..--++.|+|||+++.+++ . | ..+.++|+.+++..+.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~---r-d------g~vsviD~~~~~~v~~ 73 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVAN---R-D------GTVSVIDLATGKVVAT 73 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEE---T-T------SEEEEEETTSSSEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEc---C-C------CeEEEEECCcccEEEE
Confidence 4555 467778999999999999999996643 4456688999999998854 2 3 4789999999997654
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeEEEEecC---------CCEeEEEEeCCCc-------
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD---------KHVQEIKIRSSSH------- 239 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~l~tl~~---------~~V~~Vafs~s~d------- 239 (464)
.+ .+ ..|..+++| +||++|+.+. .++++.|+|.+|.+.+++++. ..|..|..+|...
T Consensus 74 i~---~G--~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 74 IK---VG--GNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp EE----S--SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred Ee---cC--CCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 32 12 446689998 8999988665 589999999999999998863 2566777776433
Q ss_pred --eeEEEEEcCCCcEEE--EEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEccc----CCC------
Q 012410 240 --VPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRT----EFM------ 304 (464)
Q Consensus 240 --~tIklWdi~tG~~l~--tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~g----h~~------ 304 (464)
..|-+-|..+.+.+. ++. ....-....|.| ++.+++++ ..+..|-++|.++++.+..+.. |..
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p 225 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP 225 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE
T ss_pred cCCeEEEEEeccccccceeeec-ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeecccccccccccccc
Confidence 334444666555443 222 112235677777 45566665 4677999999999987765421 222
Q ss_pred -----ceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 305 -----TPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 305 -----~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
.+|+. +-.+...++.- ...+.+||. ..+.+++++..... --+.-+||+++|...... .
T Consensus 226 hp~~g~vw~~--~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g------lFi~thP~s~~vwvd~~~-------~ 290 (369)
T PF02239_consen 226 HPGFGPVWAT--SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG------LFIKTHPDSRYVWVDTFL-------N 290 (369)
T ss_dssp ETTTEEEEEE--EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT--------
T ss_pred CCCcceEEee--ccccceecccccCCccccchhhcCeEEEEEECCCCc------ceeecCCCCccEEeeccC-------C
Confidence 22322 22333333333 557778998 69999999876554 247779999999987321 1
Q ss_pred CCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 378 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 378 s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
...++|-++|.+|-+-+++|..... ..+.-+.|+|||.+++-...|+
T Consensus 291 ~~~~~v~viD~~tl~~~~~i~~~~~---------------------------------~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 291 PDADTVQVIDKKTLKVVKTITPGPG---------------------------------KRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp SSHT-EEEEECCGTEEEE-HHHHHT-----------------------------------EEEEEE-TTSSEEEEEEE--
T ss_pred CCCceEEEEECcCcceeEEEeccCC---------------------------------CcEeccEECCCCCEEEEEEecC
Confidence 2268999999999988888854331 1477899999999877655433
Q ss_pred --cEEecc
Q 012410 458 --LVHVWS 463 (464)
Q Consensus 458 --tVrlWd 463 (464)
.|.++|
T Consensus 338 ~~~i~v~D 345 (369)
T PF02239_consen 338 NGAIVVYD 345 (369)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 588876
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.43 E-value=2.3e-13 Score=148.58 Aligned_cols=214 Identities=15% Similarity=0.188 Sum_probs=167.3
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEe
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~ 257 (464)
+.+++|+ -.|.++.+|+.|.-+|||.++|+.|+.++. ...|..+|.+ .+.|.-|++|-+.+|..+..|.
T Consensus 193 Vyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr 271 (1113)
T KOG0644|consen 193 VYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR 271 (1113)
T ss_pred eeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence 3467996 899999999999999999999999999887 3568888885 3799999999999999999999
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-----ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-----RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-----~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
+|++.|.+++|+|. .++|.|||+++||.+ -+.+... -....-+-++.|-..+.-++|++ |++-+.|.+
T Consensus 272 ghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred ccccceeeeccCcc-----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchh
Confidence 98899999999994 267899999999987 2322221 12335677788999999999999 999999986
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
.- +..|.+. +.-+.++.|-. +.+++= .+..+.+|++.+|+.++.+.||..
T Consensus 346 ~~-----l~~~~~~-----lif~t~ssd~~~~~~~ar-----------~~~~~~vwnl~~g~l~H~l~ghsd-------- 396 (1113)
T KOG0644|consen 346 EQ-----LAWRSNL-----LIFVTRSSDLSSIVVTAR-----------NDHRLCVWNLYTGQLLHNLMGHSD-------- 396 (1113)
T ss_pred hH-----hhhhccc-----eEEEeccccccccceeee-----------eeeEeeeeecccchhhhhhccccc--------
Confidence 31 2233332 22333443333 233332 288899999999999999999987
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEecc
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWS 463 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd 463 (464)
.+..|.|+|=.. +..|++.||..-|||
T Consensus 397 --------------------------~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 397 --------------------------EVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred --------------------------ceeeeeecCCCcHhhhhccCCCceEeee
Confidence 788899998554 455899999999998
No 205
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=6.4e-12 Score=140.16 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=147.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
.|+..-.|.. +.+.++-...+..+-+||.+.+.++..+. ++..- + .+..+|-
T Consensus 88 ~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-l-------~~~~~~g------------------ 140 (967)
T KOG0974|consen 88 DWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-L-------YSSLIIG------------------ 140 (967)
T ss_pred ccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEE-E-------EeEEEEe------------------
Confidence 3444333332 44566667777889999998887765443 11110 0 0111111
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEE-Eecc
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT-SFED 341 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~-tl~g 341 (464)
+++ ..=++++|+.=+.|-+|+..--+.-.-+.||...+.++.||-||.+++|.| |++||+|++ +++.+- +.-|
T Consensus 141 ---~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 141 ---DSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred ---ccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc
Confidence 111 012445566667888999773332235899999999999999999999999 999999999 677766 8889
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
|+.. ||.+.|.|+ .|++++. |.|.|+|+. .|+-+.++.+|..
T Consensus 217 HsaR-----vw~~~~~~n--~i~t~ge-----------dctcrvW~~-~~~~l~~y~~h~g------------------- 258 (967)
T KOG0974|consen 217 HSAR-----VWACCFLPN--RIITVGE-----------DCTCRVWGV-NGTQLEVYDEHSG------------------- 258 (967)
T ss_pred ccce-----eEEEEeccc--eeEEecc-----------ceEEEEEec-ccceehhhhhhhh-------------------
Confidence 9998 899999999 9999986 999999985 8888889999986
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+.||.++.+++-.+++||+.|+++|+||.
T Consensus 259 --------------~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 259 --------------KGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred --------------cceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 28999999999999999999999999984
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2e-11 Score=136.36 Aligned_cols=230 Identities=18% Similarity=0.217 Sum_probs=166.3
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-----CCCEeEEEE----------eCCCceeEEEEE-cCCC
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHVQEIKI----------RSSSHVPLKILS-IEDG 250 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-----~~~V~~Vaf----------s~s~d~tIklWd-i~tG 250 (464)
-|..+.|. |=...++.+....+|+|||-+.++++..+. ...|.++.+ ..+.|+.||||+ -+++
T Consensus 1066 ~pk~~~~h-pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFH-PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeec-CCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 35578886 666778877777899999999999997776 356777777 236899999995 3443
Q ss_pred ----cEEEEEee---CC----cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-CceEEEE-EcCCCcE
Q 012410 251 ----TVLKVFYH---LL----HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFI-FLYENQL 317 (464)
Q Consensus 251 ----~~l~tl~~---~~----~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~-Fspdgql 317 (464)
+....+.. .. ...-=++| .|-.|+|+++++=..|||||+..-++.+.....+ ..|+++. -++.|.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW-qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDW-QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeeh-hhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 23322322 11 11123444 3346899999989999999998888887655433 4566664 3467899
Q ss_pred EEEEe-CCeEEEEeCC----CceEEEeccCCCCcCCCCeeEEEECCCCCE-EEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 318 FLTFR-NRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 318 laS~s-D~TIklWd~~----Ge~l~tl~gH~~~~~~~~v~svafSpDg~~-LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
||.|- ||.|+++|.+ --++...+.|+.+-+ |..+.+-+.|-- |+|||. ||.|++||+...
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~---Iv~~slq~~G~~elvSgs~-----------~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP---IVHLSLQRQGLGELVSGSQ-----------DGDIQLLDLRMS 1289 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCccc---ceeEEeecCCCcceeeecc-----------CCeEEEEecccC
Confidence 99998 9999999973 236778999999854 678999887776 999987 999999998653
Q ss_pred eEE--EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 392 KCL--AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 392 ~cl--~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.-. -++..|-. ++ ..++++..+++..+|||||. +.|+||+.
T Consensus 1290 ~~e~~~~iv~~~~-------------------yG------------s~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWE-------------------YG------------SALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred cccccceeeeccc-------------------cC------------ccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 111 12222221 10 04899999999999999999 99999984
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.41 E-value=8.1e-12 Score=134.16 Aligned_cols=244 Identities=9% Similarity=0.121 Sum_probs=166.4
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
.+-+||+..|-.+++| .+|.+.|++|+|+.||+..|+ ++.| +.+-||.-+.- + ++...|..-+
T Consensus 34 rlliyD~ndG~llqtL-KgHKDtVycVAys~dGkrFAS----G~aD------K~VI~W~~klE---G---~LkYSH~D~I 96 (1081)
T KOG1538|consen 34 RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKDGKRFAS----GSAD------KSVIIWTSKLE---G---ILKYSHNDAI 96 (1081)
T ss_pred EEEEEeCCCccccccc-ccccceEEEEEEccCCceecc----CCCc------eeEEEeccccc---c---eeeeccCCee
Confidence 4678999999999999 669999999999999999999 6666 78888873211 1 1111122222
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe---
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY--- 257 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~--- 257 (464)
....|+ |=.+.|||+|-. ..-+|....-.-.+--+...|.+.++..+ .++||.|=+- +|+.--.++
T Consensus 97 QCMsFN-P~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpg 173 (1081)
T KOG1538|consen 97 QCMSFN-PITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPG 173 (1081)
T ss_pred eEeecC-chHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCC
Confidence 356675 555666666653 24566543322111111223444444332 3455555433 355444444
Q ss_pred eCCcceeeEEEEccCC----CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC
Q 012410 258 HLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~----~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~ 332 (464)
+...++|+|+|+|..+ +.+++....+|+-.+. -+|+.+..-+.-...|-.+.+-|+|.+++-|+ |+..+++.-.
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~-LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ-LSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEE-ecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence 2345667777777542 4556667778888777 45666654333334566788889999999988 9999999989
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|-.+-|+.....| ||+|+..|++|+.+.||. ||||--+|+.
T Consensus 253 GvrLGTvg~~D~W-----IWtV~~~PNsQ~v~~GCq-----------DGTiACyNl~ 293 (1081)
T KOG1538|consen 253 GVRLGTVGEQDSW-----IWTVQAKPNSQYVVVGCQ-----------DGTIACYNLI 293 (1081)
T ss_pred CeEEeecccccee-----EEEEEEccCCceEEEEEc-----------cCeeehhhhH
Confidence 9999999998889 999999999999999998 9999998863
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.41 E-value=1.9e-12 Score=127.16 Aligned_cols=261 Identities=13% Similarity=0.110 Sum_probs=172.6
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~ 173 (464)
...|++.|..+.+.|.+.+|+..+...++.+...+...|-.+-.-|++ .|.+ ..-| -.+-+|+|.-+..
T Consensus 21 ~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~t----qgRd------~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 21 LFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDT----QGRD------PLLILWTIAYSAF 89 (323)
T ss_pred hhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhh----cCCC------ceEEEEEccCcce
Confidence 344588899999999999999888999999986788889999988974 4555 3344 5778888876554
Q ss_pred CCcccceeeccccCceEEEEeC-CCC----cEEEEecCCCc-EEEEeCCCCeEEEEe--c------CCCEeEEEEe----
Q 012410 174 DSGFALFESESLKWPGFVEFDD-VNG----KVLTYSAQDSI-YKVFDLKNYTMLYSI--S------DKHVQEIKIR---- 235 (464)
Q Consensus 174 ~~~~~l~~~~~~~~~~~VaFs~-pdG----k~LaSgs~D~t-iKlWdl~tg~~l~tl--~------~~~V~~Vafs---- 235 (464)
.. .+.- ...+.+|..||= +++ +.|++-+...- ..+=| -|....+. . .+.|+.....
T Consensus 90 i~---i~Si-~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D--~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 90 IS---IHSI-VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD--GGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred EE---Eeee-eccccccccceeccCCCcchhheecCCcccchhhhhc--cCccceeEccCchhccccCceeeeecccccc
Confidence 31 2221 233444544431 122 22333221110 11111 11111111 1 1223333321
Q ss_pred -------CCCceeEEEEEcCCCcEEEEEe----------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC--CcEE
Q 012410 236 -------SSSHVPLKILSIEDGTVLKVFY----------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELM 296 (464)
Q Consensus 236 -------~s~d~tIklWdi~tG~~l~tl~----------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t--g~~l 296 (464)
.-+++.|-+||+.+|..+-.|. .|..++.+|+|-+..+ .=++|+.+..+-.|.+.. |.|.
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCccc
Confidence 1367889999999985443332 2457889999977543 234566666666776654 3332
Q ss_pred --EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 012410 297 --EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 372 (464)
Q Consensus 297 --~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~ 372 (464)
....-..-.|..+..-||++.|||++ |+-|||++- +++.+..|+-|..- |++||||||-.++|++|+
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-----vn~vAfspd~~lmAaask---- 313 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-----VNAVAFSPDCELMAAASK---- 313 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-----eeEEEeCCCCchhhhccC----
Confidence 12222234577888999999999999 999999999 79999999999977 899999999999999998
Q ss_pred cccccCCCCeEEEEeC
Q 012410 373 DQWMEGSAGSINVSSI 388 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi 388 (464)
|++|-||++
T Consensus 314 -------D~rISLWkL 322 (323)
T KOG0322|consen 314 -------DARISLWKL 322 (323)
T ss_pred -------CceEEeeec
Confidence 999999985
No 209
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=1.8e-10 Score=133.95 Aligned_cols=241 Identities=15% Similarity=0.207 Sum_probs=162.5
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC----------------CCEeEEEEeCC---------Cc
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----------------KHVQEIKIRSS---------SH 239 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~----------------~~V~~Vafs~s---------~d 239 (464)
+..|+.|+++..+|.+.++-+..+.|++||.. |+.+..+.. +.-+.|+|.++ ..
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 57788999985578899988999999999974 565544321 12477888763 22
Q ss_pred eeEEEEEcCCCcEEEEEeeC-----------------CcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEc--
Q 012410 240 VPLKILSIEDGTVLKVFYHL-----------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS-- 299 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~-----------------~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l-- 299 (464)
..|+.+|..+|. +.+|.+. ...-+.|+|.|. ++.+.++ ..+++|++||..+|......
T Consensus 646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRVFSGD 723 (1057)
T ss_pred ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEEEecC
Confidence 568888888764 4455321 112267999884 4666654 68999999999888764321
Q ss_pred ------cc------CCCceEEEEEcCCCc-EEEEEe-CCeEEEEeC-CCceEEEe-------------ccCC-------C
Q 012410 300 ------RT------EFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF-RGELVTSF-------------EDHL-------L 344 (464)
Q Consensus 300 ------~g------h~~~v~sv~Fspdgq-llaS~s-D~TIklWd~-~Ge~l~tl-------------~gH~-------~ 344 (464)
.+ ....|+.++|+|||+ ++++-+ +++|++||. +|+..... -++. .
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 11 234688899999998 666666 899999998 45532111 0010 0
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
.+ -..++|+|||+++++-+. +++|++||..+|.+.. +-|... + ...+|.
T Consensus 804 ~~----P~Gvavd~dG~LYVADs~-----------N~rIrviD~~tg~v~t-iaG~G~-~----G~~dG~---------- 852 (1057)
T PLN02919 804 QH----PLGVLCAKDGQIYVADSY-----------NHKIKKLDPATKRVTT-LAGTGK-A----GFKDGK---------- 852 (1057)
T ss_pred cC----CceeeEeCCCcEEEEECC-----------CCEEEEEECCCCeEEE-EeccCC-c----CCCCCc----------
Confidence 11 247999999999888765 8999999998888764 333221 0 000000
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.....+.....|+++|||+.+++-+.+++|++||.
T Consensus 853 -----~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 853 -----ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred -----ccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 01222336778999999999999999999999984
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.7e-12 Score=134.11 Aligned_cols=278 Identities=13% Similarity=0.199 Sum_probs=205.3
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce---EEEEeCCCC
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG---FVEFDDVNG 198 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~---~VaFs~pdG 198 (464)
.-|+. |..-|..|-|+..|+.|++ ++|| +++-+||..+++.... |..+|..-++ |+-|+ +-
T Consensus 136 ~kL~~-H~GcVntV~FN~~Gd~l~S----gSDD------~~vv~WdW~~~~~~l~---f~SGH~~NvfQaKFiP~s--~d 199 (559)
T KOG1334|consen 136 KKLNK-HKGCVNTVHFNQRGDVLAS----GSDD------LQVVVWDWVSGSPKLS---FESGHCNNVFQAKFIPFS--GD 199 (559)
T ss_pred hcccC-CCCccceeeecccCceeec----cCcc------ceEEeehhhccCcccc---cccccccchhhhhccCCC--CC
Confidence 35755 7788999999999999999 8899 9999999998887432 2232222222 67776 55
Q ss_pred cEEEEecCCCcEEEEeCC-CCeEEEEec----CCCEeEEEEeC---------CCceeEEEEEcCCCcEEEEEe---eCCc
Q 012410 199 KVLTYSAQDSIYKVFDLK-NYTMLYSIS----DKHVQEIKIRS---------SSHVPLKILSIEDGTVLKVFY---HLLH 261 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~-tg~~l~tl~----~~~V~~Vafs~---------s~d~tIklWdi~tG~~l~tl~---~~~~ 261 (464)
+.|++++.|+.+|+=.+- +|.+..+-. .+.|..+|.-| +.|.-++-.|+.++..-.++. ..-.
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 789999999999997754 566554332 45677777733 588889988988877665554 1111
Q ss_pred ---ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE------E-----Ecc-cCCCceEEEEEc-CCCcEEEEEeCCe
Q 012410 262 ---RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM------E-----VSR-TEFMTPSAFIFL-YENQLFLTFRNRT 325 (464)
Q Consensus 262 ---~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l------~-----~l~-gh~~~v~sv~Fs-pdgqllaS~sD~T 325 (464)
....++..|.....+++++.|+-+|++|.+.-..- . .|. .....|..++|+ ..+.+|||-+|--
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 22777877754457778999999999997763321 1 111 112458899999 5556666666989
Q ss_pred EEEEeC---CC----------ceEEE-eccCCCCcCCCCeeEE-EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 326 VAVWNF---RG----------ELVTS-FEDHLLWHPDCNTNNI-YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 326 IklWd~---~G----------e~l~t-l~gH~~~~~~~~v~sv-afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|-|.+- .| .+++. ++||.+-.. |..| +|-|...+++|||+ =|-|-||+-.+
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T---VKgVNFfGPrsEyVvSGSD-----------CGhIFiW~K~t 425 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT---VKGVNFFGPRSEYVVSGSD-----------CGHIFIWDKKT 425 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccc---cceeeeccCccceEEecCc-----------cceEEEEecch
Confidence 999975 36 45555 999988532 4444 56899999999996 68999999999
Q ss_pred CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 391 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 391 G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|+.|+-+.|... -|.+|-=+|=-..|||.+-|.-||||-
T Consensus 426 ~eii~~MegDr~----------------------------------VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 426 GEIIRFMEGDRH----------------------------------VVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred hHHHHHhhcccc----------------------------------eEeccCCCCCCchhhccCCccceeeec
Confidence 999999988664 788888899999999999999999994
No 211
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1e-10 Score=120.65 Aligned_cols=199 Identities=14% Similarity=0.088 Sum_probs=129.1
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeCCC-----------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSSS-----------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s~-----------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
...|-++|...++ ...+. ...+.+.+|+|+. ...|.+||+++|+......+ ...+..++|+|+ +
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~~~~~~~~spD-g 245 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PGMNGAPAFSPD-G 245 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CCCccceEECCC-C
Confidence 3457777765333 33333 3457788887752 25799999999976543332 244567899884 5
Q ss_pred CeEEEE-eCC--CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC--eEEEEeCCCceEEEeccCCCCc
Q 012410 274 EKLLVK-QEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 346 (464)
Q Consensus 274 ~~lla~-s~D--~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~--TIklWd~~Ge~l~tl~gH~~~~ 346 (464)
..|+.. +.+ ..|.+||+.+++..+.. .+........|+|||+.|+..+ ++ .|-+||+.+...+.+..+...
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~- 323 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY- 323 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC-
Confidence 566653 444 46889999988765543 3434445678999999887665 33 566778753334455544443
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccc
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
+...+|||||++|+..+.. +.-..|.+||+.+++. ..+..+.
T Consensus 324 ----~~~~~~spdg~~i~~~~~~--------~~~~~i~~~d~~~~~~-~~l~~~~------------------------- 365 (417)
T TIGR02800 324 ----NASPSWSPDGDLIAFVHRE--------GGGFNIAVMDLDGGGE-RVLTDTG------------------------- 365 (417)
T ss_pred ----ccCeEECCCCCEEEEEEcc--------CCceEEEEEeCCCCCe-EEccCCC-------------------------
Confidence 4578999999999988751 0123799999988764 3332221
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 427 IRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
.....+|+|||+.|+.++.++.
T Consensus 366 ----------~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 366 ----------LDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred ----------CCCCceECCCCCEEEEEEeCCC
Confidence 1234589999999888877654
No 212
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.38 E-value=1.2e-09 Score=112.09 Aligned_cols=263 Identities=13% Similarity=0.094 Sum_probs=165.6
Q ss_pred EeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 95 ~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
...++.|.+.+.+|.+.++|..+|+.+-..+. ......+++. ++..+++ +..+ ..+..+|..+|+.
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v--~~~~v~v----~~~~------g~l~ald~~tG~~- 127 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA--DGGLVFV----GTEK------GEVIALDAEDGKE- 127 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE--cCCEEEE----EcCC------CEEEEEECCCCcE-
Confidence 34578888999999999999999999987755 3333333333 3555555 2233 4677778888886
Q ss_pred CcccceeeccccCce-EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEe------------EEEEeCCCce
Q 012410 175 SGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQ------------EIKIRSSSHV 240 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~-~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~------------~Vafs~s~d~ 240 (464)
+|+...-+-+. +.... +++ +..++.|+.+..||.++|+.+..... .... ...+-+..++
T Consensus 128 ----~W~~~~~~~~~~~p~v~--~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g 200 (377)
T TIGR03300 128 ----LWRAKLSSEVLSPPLVA--NGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGG 200 (377)
T ss_pred ----eeeeccCceeecCCEEE--CCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCC
Confidence 33321111000 11221 454 44567899999999999998866542 1111 1122334667
Q ss_pred eEEEEEcCCCcEEEEEeeCCc-------ce----eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEE
Q 012410 241 PLKILSIEDGTVLKVFYHLLH-------RN----KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 309 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~-------~~----~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv 309 (464)
.+.-+|.++|+.+.+...... +. .+... .++.+.+++.++.+..||+.+|+.+-..... ...+.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p 275 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGP 275 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCc
Confidence 899999999998876541100 00 11111 2478888889999999999999977654321 11122
Q ss_pred EEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 310 IFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 310 ~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+. .++++++...|+.|..+|. +|+.+-..+.-.... ..+..+ .|..|+.++. ||.|.++|.
T Consensus 276 ~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~----~ssp~i--~g~~l~~~~~-----------~G~l~~~d~ 337 (377)
T TIGR03300 276 AV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ----LTAPAV--VGGYLVVGDF-----------EGYLHWLSR 337 (377)
T ss_pred eE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCc----cccCEE--ECCEEEEEeC-----------CCEEEEEEC
Confidence 21 2455554444999999999 799876553211110 112222 4667877776 999999999
Q ss_pred CCCeEEEEEccCC
Q 012410 389 LTGKCLAKINATN 401 (464)
Q Consensus 389 ~tG~cl~tl~gh~ 401 (464)
.+|+.+.+++.+.
T Consensus 338 ~tG~~~~~~~~~~ 350 (377)
T TIGR03300 338 EDGSFVARLKTDG 350 (377)
T ss_pred CCCCEEEEEEcCC
Confidence 9999999998665
No 213
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.8e-11 Score=118.01 Aligned_cols=169 Identities=12% Similarity=0.062 Sum_probs=115.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
+-|.+ |-+|+|+.|+.+++|-+..++. +- ..=|-+|+ -..+.+++.|-.+++.++|.
T Consensus 15 ~qa~s-p~~~~l~agn~~G~iav~sl~s------l~----s~sa~~~g------------k~~iv~eqahdgpiy~~~f~ 71 (325)
T KOG0649|consen 15 AQAIS-PSKQYLFAGNLFGDIAVLSLKS------LD----SGSAEPPG------------KLKIVPEQAHDGPIYYLAFH 71 (325)
T ss_pred HHhhC-CcceEEEEecCCCeEEEEEehh------hh----ccccCCCC------------CcceeeccccCCCeeeeeee
Confidence 34565 8899999999999999988753 10 00011222 11223345555788999986
Q ss_pred ccCCCeEEEEeCCCeEEEEECCCCc-------EEEEc-ccCC-----CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc
Q 012410 270 EQFNEKLLVKQENENLQILDVRNAE-------LMEVS-RTEF-----MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE 334 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv~tg~-------~l~~l-~gh~-----~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge 334 (464)
. ..||+++ ||-|+=|....-+ +.+.. .-|. -.|.+.-.-|...-++.+. |+.+--||+ +|+
T Consensus 72 d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~ 147 (325)
T KOG0649|consen 72 D---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR 147 (325)
T ss_pred h---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE
Confidence 3 4555554 5999977644322 11211 1122 2466776666555455554 999999999 799
Q ss_pred eEEEeccCCCCcCCCCeeEEEE-CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svaf-SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
...+|+||+.+ |-+|+- +.++++ .||++ |||+||||..|+||+++|..+.+
T Consensus 148 i~r~~rGHtDY-----vH~vv~R~~~~qi-lsG~E-----------DGtvRvWd~kt~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 148 IQREYRGHTDY-----VHSVVGRNANGQI-LSGAE-----------DGTVRVWDTKTQKHVSMIEPYKN 199 (325)
T ss_pred EEEEEcCCcce-----eeeeeecccCcce-eecCC-----------CccEEEEeccccceeEEeccccC
Confidence 99999999998 778888 666664 57765 99999999999999999987654
No 214
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.36 E-value=1.8e-12 Score=138.51 Aligned_cols=115 Identities=14% Similarity=0.216 Sum_probs=101.5
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE-------EEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-------MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~-------l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~- 331 (464)
-|..++|.|.+.++|+++.+|+.|+||-+..+-+ -..+.+|...+.++.|.| -..+||+++ |-||+|||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 4466778887889999999999999999988653 346888999999999997 466788888 999999999
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
++++.-.|.||+.. |.++||||||+.+|+.|+ ||+|++++-.+++
T Consensus 709 ~~~~~~~l~gHtdq-----If~~AWSpdGr~~AtVcK-----------Dg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQ-----IFGIAWSPDGRRIATVCK-----------DGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhheeccCcCc-----eeEEEECCCCcceeeeec-----------CceEEEeCCCCCC
Confidence 69999999999998 889999999999999999 9999999987664
No 215
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=6.8e-10 Score=117.90 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=187.1
Q ss_pred eehhccCCeEEeeecccccEeeEeecC--CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 101 VFALAHSGVCAAFSRETNRRICFLNVS--PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 101 l~~l~~~g~~~~~~~~~g~~l~~ln~~--~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
+.+...+..+.+|+-...+...+.... .....+..+||++|+.+|- +.+ ..++|.++.+++.
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~----~~~-------~~v~i~~~~~~~~----- 67 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAY----SDN-------QVVKVFEIATLKV----- 67 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEE----EcC-------CeEEEEEccCCcE-----
Confidence 445566667788875554555544221 1445789999999999877 333 5899999888873
Q ss_pred ceeeccccCceEEEEeCCCCcEEEEe-----cCC-----CcEEEEeCCCCeEEEEecC--CCEeEEEEeCCC-------c
Q 012410 179 LFESESLKWPGFVEFDDVNGKVLTYS-----AQD-----SIYKVFDLKNYTMLYSISD--KHVQEIKIRSSS-------H 239 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~pdGk~LaSg-----s~D-----~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~s~-------d 239 (464)
+++.... ....+.|| |-|.+|.+= -.| ..+++|+++|+.....+.. ..-|...||+++ .
T Consensus 68 ~lt~~~~-~~~~L~fS-P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~ 145 (566)
T KOG2315|consen 68 VLCVELK-KTYDLLFS-PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVS 145 (566)
T ss_pred EEEeccc-eeeeeeec-ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhc
Confidence 4444333 55579997 899888642 123 3466999999665555541 111455555421 1
Q ss_pred eeEEEEEcCCCcEEEEEee--CCcce--------------------------------------------------eeEE
Q 012410 240 VPLKILSIEDGTVLKVFYH--LLHRN--------------------------------------------------KKVD 267 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~--~~~~~--------------------------------------------------~~V~ 267 (464)
..+.++++.+- ++..+ +..++ .+|.
T Consensus 146 nev~f~~~~~f---~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvq 222 (566)
T KOG2315|consen 146 NEVQFYDLGSF---KTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQ 222 (566)
T ss_pred ceEEEEecCCc---cceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeE
Confidence 22333333220 00000 00111 1222
Q ss_pred E--EccCCCeEEEEe--CC---------CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe---CCeEEEEeC
Q 012410 268 F--IEQFNEKLLVKQ--EN---------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNF 331 (464)
Q Consensus 268 F--~~~~~~~lla~s--~D---------~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s---D~TIklWd~ 331 (464)
| .....+.|+..+ .| .++.+.++++-.|.--|.. ...|.+|.|+|+|+-|+..- =.+|.|.|.
T Consensus 223 m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 223 MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 2 111111222222 44 3677788774445544544 37899999999998887753 779999999
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
+|..+..|..- . =|.++|+|.|.+|+-++. +---|.|-+||+.+-+||.++.+-..
T Consensus 302 r~~~v~df~eg--p-----RN~~~fnp~g~ii~lAGF--------GNL~G~mEvwDv~n~K~i~~~~a~~t--------- 357 (566)
T KOG2315|consen 302 RGKPVFDFPEG--P-----RNTAFFNPHGNIILLAGF--------GNLPGDMEVWDVPNRKLIAKFKAANT--------- 357 (566)
T ss_pred CCCEeEeCCCC--C-----ccceEECCCCCEEEEeec--------CCCCCceEEEeccchhhccccccCCc---------
Confidence 99999887432 2 367999999999999886 22358999999999999999977643
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC------CCcEEecc
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR------HGLVHVWS 463 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~------DgtVrlWd 463 (464)
+-..|+|||+.++|+.. |.-++||+
T Consensus 358 ---------------------------t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 358 ---------------------------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred ---------------------------eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 34799999999999874 78899996
No 216
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=2.3e-09 Score=111.03 Aligned_cols=270 Identities=11% Similarity=0.068 Sum_probs=175.3
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-c--c
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-E--S 184 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~--~ 184 (464)
+.+.+.|..+++.+.++..+..- +-+ +||||+.|.++..|.+-.-++.....+.++|+++++..+..++=.. + .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 78999999999999998765433 234 9999999999886554444444457999999999998665443111 0 2
Q ss_pred ccCceEEEEeCCCCcEEEEec--CCCcEEEEeCCCCeEEEEecC-CCEeEEEEeCC------Ccee-EEEEEcCCCcEEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISD-KHVQEIKIRSS------SHVP-LKILSIEDGTVLK 254 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs--~D~tiKlWdl~tg~~l~tl~~-~~V~~Vafs~s------~d~t-IklWdi~tG~~l~ 254 (464)
...+..++|| |||+.|.-.- .+..+-|.|+.+++.+..+.- ...+-...+.. .|+. .++=.-.+|+...
T Consensus 104 ~~~~~~~~ls-~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 104 GTYPWMTSLT-PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred cCccceEEEC-CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 3556689997 8999887443 389999999999999988762 22222222211 1221 1111122333211
Q ss_pred -EEe-eCC--cce-eeEEEEccCCCeEEEEeCCCeEEEEECCC-----CcEEEEcccC-------CCceEEEEEcCCCcE
Q 012410 255 -VFY-HLL--HRN-KKVDFIEQFNEKLLVKQENENLQILDVRN-----AELMEVSRTE-------FMTPSAFIFLYENQL 317 (464)
Q Consensus 255 -tl~-~~~--~~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~t-----g~~l~~l~gh-------~~~v~sv~Fspdgql 317 (464)
+.. .+. ..+ ....|.+.++..+.++.+ |+|.+-|+.. .+.+.++... -..+--++++|||+.
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 100 000 000 111455544545555666 9999999544 4444443221 111223899999887
Q ss_pred EEEEe-----------CCeEEEEeC-CCceEEEec-cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeE
Q 012410 318 FLTFR-----------NRTVAVWNF-RGELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 318 laS~s-----------D~TIklWd~-~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtI 383 (464)
+-... .+.|.++|. +++.+..+. |+. ++.|+|||||+ +|...+. .+++|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-------~~~iavS~Dgkp~lyvtn~----------~s~~V 324 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-------IDSINVSQDAKPLLYALST----------GDKTL 324 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-------eeeEEECCCCCeEEEEeCC----------CCCcE
Confidence 76632 258999999 799998876 653 67999999999 8877653 37899
Q ss_pred EEEeCCCCeEEEEEcc
Q 012410 384 NVSSILTGKCLAKINA 399 (464)
Q Consensus 384 klWdi~tG~cl~tl~g 399 (464)
-+-|+.+++.++++.+
T Consensus 325 sViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 325 YIFDAETGKELSSVNQ 340 (352)
T ss_pred EEEECcCCeEEeeecc
Confidence 9999999999999833
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=4.3e-12 Score=132.03 Aligned_cols=190 Identities=17% Similarity=0.179 Sum_probs=162.5
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeC
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~ 259 (464)
|-.+.|+ -||+.|+-|+..|-+-.+|..|+++...+. .+.|.+|+|=- ..-.-+.|+|-. |+.|..+..+
T Consensus 132 PY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~ 209 (545)
T KOG1272|consen 132 PYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRH 209 (545)
T ss_pred Ceeeeec-CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhc
Confidence 4468887 799999999999999999999999998887 67899999832 233568888875 9999988854
Q ss_pred CcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE
Q 012410 260 LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l 336 (464)
.++..++|.|. ..||+ +++.|-++--||.+|+++..+.+-...+....-+|-+-.+-.|- +|||.+|.- .-|.|
T Consensus 210 -~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 210 -IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred -Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 78899999996 67777 57999999999999999988887777788888899999999998 999999998 47878
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
.-+--|... |++||+.|+|+|+|+.+. |..+||||+.+-+-+.++.
T Consensus 287 vKiLcH~g~-----V~siAv~~~G~YMaTtG~-----------Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 287 VKILCHRGP-----VSSIAVDRGGRYMATTGL-----------DRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred HHHHhcCCC-----cceEEECCCCcEEeeccc-----------ccceeEeeeccccccceee
Confidence 778889888 899999999999999987 9999999998766555543
No 218
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.35 E-value=4.5e-10 Score=118.27 Aligned_cols=303 Identities=17% Similarity=0.236 Sum_probs=209.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecC-------CCCcccceeeEEEEEecc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYAS-------DNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~s-------ddfs~L~~~ti~l~~i~~ 170 (464)
|-+||+...-| +++|.-..+-.|..+ .|.+ |+-+-|||+|.+|.+-+--.- -+|+.++ ...+||++.
T Consensus 44 G~~l~~~~~~~-V~~~~g~~~~~l~~~--~~~~-V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n--~~~vwd~~s 117 (561)
T COG5354 44 GTYLFSEHAAG-VECWGGPSKAKLVRF--RHPD-VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN--NVFVWDIAS 117 (561)
T ss_pred chheehhhccc-eEEccccchhheeee--ecCC-ceecccCcccceeeeeccCCccChhhccCCccccC--ceeEEeccC
Confidence 77777776665 677764444433333 3666 899999999999999652111 1233333 789999999
Q ss_pred CCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE----EEecCCCEeEEEEeCC---------
Q 012410 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML----YSISDKHVQEIKIRSS--------- 237 (464)
Q Consensus 171 G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l----~tl~~~~V~~Vafs~s--------- 237 (464)
|++..++..-....++|| .+.|+ -|.+++|--. -..++|.++ |+.+- +.|.-..|.+..|+|.
T Consensus 118 g~iv~sf~~~~q~~~~Wp-~~k~s-~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~ 193 (561)
T COG5354 118 GMIVFSFNGISQPYLGWP-VLKFS-IDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYW 193 (561)
T ss_pred ceeEeeccccCCcccccc-eeeee-ecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEE
Confidence 999887776665456776 67887 7888888663 346889997 65542 3444567888888773
Q ss_pred ------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE------e-----CCCeEEEEECCCCcEEEEcc
Q 012410 238 ------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK------Q-----ENENLQILDVRNAELMEVSR 300 (464)
Q Consensus 238 ------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~------s-----~D~tIkIWDv~tg~~l~~l~ 300 (464)
...+++||.|.-+..+.+-+--.-....+-+.+. |..|+.- + ...++.|.+++ +.-+.+..
T Consensus 194 tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~-g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~ 271 (561)
T COG5354 194 TPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL-GKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEK 271 (561)
T ss_pred ccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC-CceEEEEEEEeeecccceeccceEEEEeec-ccccceec
Confidence 4467899999988888764421011234444453 4555431 1 23678999977 44444444
Q ss_pred cCCCceEEEEEcCCCcEEEEEe---CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 301 TEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 301 gh~~~v~sv~FspdgqllaS~s---D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
+-.+.|..++|.|++..|+..+ +.++.+.|++|++...+.... =+.+.|||.+++++-++..
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~-------rNT~~fsp~~r~il~agF~-------- 336 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK-------RNTIFFSPHERYILFAGFD-------- 336 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc-------cccccccCcccEEEEecCC--------
Confidence 5578899999999999988865 889999999999776654332 3578999999999998761
Q ss_pred CCCCeEEEEeCCCC-eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee--
Q 012410 378 GSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-- 454 (464)
Q Consensus 378 s~DgtIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-- 454 (464)
---|.|-+||.... +|+.++.|-+. .-+.|||||+.+.+.-
T Consensus 337 nl~gni~i~~~~~rf~~~~~~~~~n~------------------------------------s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 337 NLQGNIEIFDPAGRFKVAGAFNGLNT------------------------------------SYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred ccccceEEeccCCceEEEEEeecCCc------------------------------------eEeeccCCceEEEecCCC
Confidence 12488999998655 45557766542 2357899999887763
Q ss_pred ----CCCcEEecc
Q 012410 455 ----RHGLVHVWS 463 (464)
Q Consensus 455 ----~DgtVrlWd 463 (464)
.|..|+|||
T Consensus 381 ~k~~~Dn~i~l~~ 393 (561)
T COG5354 381 EKLRVDNSIKLWD 393 (561)
T ss_pred cccccCcceEEEE
Confidence 488899987
No 219
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2e-11 Score=125.64 Aligned_cols=197 Identities=13% Similarity=0.130 Sum_probs=139.8
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEE
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKl 212 (464)
..|+|+.+|..|++ +..| .++|+|+.+.-+.. +.+.++-+-+..+.|| ||||+|||=+.| ..+|
T Consensus 148 k~vaf~~~gs~lat----gg~d------g~lRv~~~Ps~~t~----l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT----GGTD------GTLRVWEWPSMLTI----LEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCCCEeee----cccc------ceEEEEecCcchhh----hhhHhhcCccccceeC-CCCcEEEEecCC-ceEE
Confidence 88999999999999 5566 79999998776664 3333444555689998 999999999999 8999
Q ss_pred EeCCCCeEEEEec----CCCEeEEEEeCCCce-eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEE
Q 012410 213 FDLKNYTMLYSIS----DKHVQEIKIRSSSHV-PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 287 (464)
Q Consensus 213 Wdl~tg~~l~tl~----~~~V~~Vafs~s~d~-tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkI 287 (464)
||+.+|.++.++. +.....+.|+.+.++ +++|.... .++..+.. .-+.+
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~-----------------------~~~~~v~~---~~~~~ 265 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ-----------------------FPGGGVRL---CDISL 265 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEec-----------------------CCCCceeE---EEeee
Confidence 9999998887665 234567777655322 23332221 01111111 12334
Q ss_pred EECC-CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEE-EeccCCCCcCCCCeeEEEECCCCCEE
Q 012410 288 LDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLI 363 (464)
Q Consensus 288 WDv~-tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~L 363 (464)
|+-. -++..+....+ ..+++++-|+||+++|-|+ ||.|-|.+. +=++++ .=+-|... |..|.|+||.+++
T Consensus 266 w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~-----VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 266 WSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGF-----VTGLTFSPDSRYL 339 (398)
T ss_pred eccccccchhhhhhcc-CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheee-----eeeEEEcCCcCcc
Confidence 5421 12222333333 5799999999999999999 999999998 677766 44568776 8999999999999
Q ss_pred EEEecCCCccccccCCCCeEEEEeC
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+|-|. |.+++|--+
T Consensus 340 ~svSs-----------~~~~~v~~l 353 (398)
T KOG0771|consen 340 ASVSS-----------DNEAAVTKL 353 (398)
T ss_pred ccccc-----------CCceeEEEE
Confidence 99775 777777654
No 220
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=4.2e-09 Score=110.12 Aligned_cols=167 Identities=7% Similarity=0.089 Sum_probs=108.2
Q ss_pred cEEEEeCCCCeEEEEec-CCCEeEEEEeCCC-----------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 209 IYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS-----------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~-----------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
.+.++|...++...... ...+.+.+|||++ ...|.+||+.+|+...... ....+..++|+| ++.+|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g~~~~~~~Sp-DG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEGLNGAPAWSP-DGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCCCcCCeEECC-CCCEE
Confidence 35566776544322222 4567888888842 2358899999997654322 223456789999 46677
Q ss_pred EEE-eCCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC--eEEEEeC-CCceEE-EeccCCCCcC
Q 012410 277 LVK-QENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNF-RGELVT-SFEDHLLWHP 347 (464)
Q Consensus 277 la~-s~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~--TIklWd~-~Ge~l~-tl~gH~~~~~ 347 (464)
+.. +.++ .|.+||+.+++..+ +..+.....+..|+|||+.|+-.+ ++ .|-++|+ +|+..+ ++.++.
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~---- 332 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY---- 332 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC----
Confidence 653 4444 68888999998765 444444566778999999877665 44 4666787 576433 333332
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.....|||||+.|+-.+.. .....|.++|+.+|+.
T Consensus 333 ---~~~~~~Spdg~~i~~~~~~--------~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 333 ---NARPRLSADGKTLVMVHRQ--------DGNFHVAAQDLQRGSV 367 (430)
T ss_pred ---ccceEECCCCCEEEEEEcc--------CCceEEEEEECCCCCE
Confidence 2357899999999876641 1133688999998875
No 221
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=1.8e-09 Score=125.58 Aligned_cols=255 Identities=13% Similarity=0.127 Sum_probs=162.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCC-------------ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPD-------------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~-------------~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
|++..+-..++.++.|+ .+|+.+.++..... ..-..|++.++|+.|.+ ++.. + +.|+
T Consensus 580 g~lyVaDs~n~rI~v~d-~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV--aDt~-n------~~Ir 649 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTD-LDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV--ADTE-N------HALR 649 (1057)
T ss_pred CeEEEEECCCCeEEEEe-CCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE--EeCC-C------ceEE
Confidence 66777777788999998 67887766633111 12478999999887777 3332 3 5677
Q ss_pred EEEeccCCCC--C--cccce--------eeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeE
Q 012410 165 IEYIRRGKPD--S--GFALF--------ESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQE 231 (464)
Q Consensus 165 l~~i~~G~~~--~--~~~l~--------~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~ 231 (464)
..+..+|... . +.... +...+.+|..|+|+ | +|.+.++.+.++.|++||..+|... ++.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~-~~~------ 721 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTR-VFS------ 721 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEE-EEe------
Confidence 6676555431 0 00000 00125678899998 6 7888888899999999999887642 211
Q ss_pred EEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcc----------
Q 012410 232 IKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR---------- 300 (464)
Q Consensus 232 Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~---------- 300 (464)
.+ +...-.+-..+. ...| ..-..|+|+|+ ++.|.++ +.++.|++||+.++.......
T Consensus 722 ----G~--G~~~~~~g~~~~-~~~~----~~P~GIavspd-G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 722 ----GD--GYERNLNGSSGT-STSF----AQPSGISLSPD-LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred ----cC--CccccCCCCccc-cccc----cCccEEEEeCC-CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence 11 000000000000 0011 22367899884 5556654 688999999998876321110
Q ss_pred -----------cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCC--Cc-------CCCCeeEEEECCC
Q 012410 301 -----------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL--WH-------PDCNTNNIYITSD 359 (464)
Q Consensus 301 -----------gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~--~~-------~~~~v~svafSpD 359 (464)
.....|..++|+|||+++++-+ +++|++||..+..+.++.|... .. .--....|+++||
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 1234578999999999999988 9999999995444444444211 00 0001468999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
|+++++-+. +++|++||+.+++.
T Consensus 870 G~lyVaDt~-----------Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 870 GRLFVADTN-----------NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEECC-----------CCEEEEEECCCCcc
Confidence 999888654 89999999999875
No 222
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=7.9e-10 Score=116.86 Aligned_cols=173 Identities=11% Similarity=0.054 Sum_probs=112.0
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-C----CCeEEEEECCC---CcEEEEcccCCCceEEEEEc
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-E----NENLQILDVRN---AELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~----D~tIkIWDv~t---g~~l~~l~gh~~~v~sv~Fs 312 (464)
.|-+.++.+|+..+... ....+...+|+| ++.+|+..+ . |..+.+||+.+ |+..+...++.....+.+||
T Consensus 212 ~I~~~~l~~g~~~~lt~-~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 212 KIFLGSLENPAGKKILA-LQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred eEEEEECCCCCceEeec-CCCCccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 47777888887544332 224456789999 466777644 2 44566688876 45555554444445678899
Q ss_pred CCCcEEEEEe--CCeEEEEeC--C--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 313 YENQLFLTFR--NRTVAVWNF--R--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 313 pdgqllaS~s--D~TIklWd~--~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
|||+.|+..+ ++..+||.+ . |...+.+..+... +....|||||+.||..+.. .....|.+|
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~-----~~~p~wSPDG~~Laf~~~~--------~g~~~I~v~ 356 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRN-----SSCPAWSPDGKKIAFCSVI--------KGVRQICVY 356 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCC-----ccceeECCCCCEEEEEEcC--------CCCcEEEEE
Confidence 9999887665 677777753 2 3445556555443 4578899999999877641 124579999
Q ss_pred eCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-eeCC--CcEEecc
Q 012410 387 SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRH--GLVHVWS 463 (464)
Q Consensus 387 di~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS-gs~D--gtVrlWd 463 (464)
|+.+|++.. |..... .+.+..|+|||+.|+- +..+ ..|.+||
T Consensus 357 dl~~g~~~~-Lt~~~~----------------------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 357 DLATGRDYQ-LTTSPE----------------------------------NKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred ECCCCCeEE-ccCCCC----------------------------------CccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 999998754 322211 4556889999998874 4333 3455554
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=8.5e-10 Score=110.81 Aligned_cols=219 Identities=12% Similarity=0.168 Sum_probs=154.4
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCC--E-------eEEEE-----eCC-CceeEEEEEcCCCcE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKH--V-------QEIKI-----RSS-SHVPLKILSIEDGTV 252 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~--V-------~~Vaf-----s~s-~d~tIklWdi~tG~~ 252 (464)
+|+|+ .|..-.|-|- |.-+|+++++-.+.-.+-. +.. + .-+|+ +|- .-..|-|||-....|
T Consensus 10 svs~N-QD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~ 87 (346)
T KOG2111|consen 10 SVSFN-QDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC 87 (346)
T ss_pred EEEEc-cCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence 69997 5766666554 4459999987643321111 111 1 12222 111 224689999988999
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcEEEEcccCC--CceEEEEEcCCCcEEEEEe--CCeEE
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEF--MTPSAFIFLYENQLFLTFR--NRTVA 327 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~l~~l~gh~--~~v~sv~FspdgqllaS~s--D~TIk 327 (464)
+.+|... .+|+.|.+.+ ++|++- -.+.|.+|... +=+.++.+.+-. ...-++.-+-+..+||--+ -|.|+
T Consensus 88 i~el~f~-~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 88 IIELSFN-SEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEec-cceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 9998854 7889999866 555553 45799999877 344455444332 2233333344566777766 88999
Q ss_pred EEeCC-Cce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe-EEEEeCCCCeEEEEEccCCCC
Q 012410 328 VWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 328 lWd~~-Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt-IklWdi~tG~cl~tl~gh~~~ 403 (464)
|=|+. -+. -.....|... |..++++-+|.+||++|. .|| |||||..+|+.+..|+--.+
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt-----------kGTLIRIFdt~~g~~l~E~RRG~d- 225 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST-----------KGTLIRIFDTEDGTLLQELRRGVD- 225 (346)
T ss_pred EEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc-----------CcEEEEEEEcCCCcEeeeeecCCc-
Confidence 99984 332 3688899987 789999999999999986 565 79999999999999864332
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+ ..|.+++||||++.||.+|+.||||+..
T Consensus 226 -----------~--------------------A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 226 -----------R--------------------ADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred -----------h--------------------heEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 0 2899999999999999999999999974
No 224
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.27 E-value=2.1e-08 Score=102.66 Aligned_cols=283 Identities=15% Similarity=0.173 Sum_probs=161.8
Q ss_pred CCeEEeeec--ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc--CCCCCcccceee
Q 012410 107 SGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDSGFALFES 182 (464)
Q Consensus 107 ~g~~~~~~~--~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~--G~~~~~~~l~~~ 182 (464)
.+-|..|+. .+|+.-..-......--.-++++|+++.|.+++....+. ..+..+.+.. |++......-.
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~------g~v~~~~i~~~~g~L~~~~~~~~- 84 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDS------GGVSSYRIDPDTGTLTLLNSVPS- 84 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTT------TEEEEEEEETTTTEEEEEEEEEE-
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCC------CCEEEEEECCCcceeEEeeeecc-
Confidence 355666654 455432211111222234578999999999966332123 4666666643 45421111111
Q ss_pred ccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCC-CeEEEEecCCCEeEEEE---eCCCceeEEEEEcCCCcEEEEEe
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKN-YTMLYSISDKHVQEIKI---RSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~t-g~~l~tl~~~~V~~Vaf---s~s~d~tIklWdi~tG~~l~tl~ 257 (464)
.-..|..|+++ |||+.|..+.. +++|-++++.. |.+..... .+.+ .|.. +.++
T Consensus 85 -~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-----~~~~~g~g~~~-------~rq~-------- 142 (345)
T PF10282_consen 85 -GGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-----TVRHEGSGPNP-------DRQE-------- 142 (345)
T ss_dssp -SSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-----EEESEEEESST-------TTTS--------
T ss_pred -CCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCCcccceeee-----ecccCCCCCcc-------cccc--------
Confidence 12456689997 89999988875 88999999875 55432211 1111 0110 0111
Q ss_pred eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCc--EEE--Ec-ccCCCceEEEEEcCCCcEEEEEe--CCeEEEE
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE--LME--VS-RTEFMTPSAFIFLYENQLFLTFR--NRTVAVW 329 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~--~l~--~l-~gh~~~v~sv~FspdgqllaS~s--D~TIklW 329 (464)
..+...|.|.| ++..+++.. ....|.++++.... +.. .+ ......|+-++|+|||+.+-... +++|.++
T Consensus 143 --~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 143 --GPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp --STCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred --cccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 13446788888 456666654 44589999987755 422 22 23346799999999999776655 9999999
Q ss_pred eCC---Cce--EEEeccCC-CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC--CCCeEEEEEccCC
Q 012410 330 NFR---GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTGKCLAKINATN 401 (464)
Q Consensus 330 d~~---Ge~--l~tl~gH~-~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi--~tG~cl~tl~gh~ 401 (464)
++. |++ +++..-.. .+.....-..|++||||++|..... .+.+|-++++ .+|+. +.++.-.
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr----------~~~sI~vf~~d~~~g~l-~~~~~~~ 288 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR----------GSNSISVFDLDPATGTL-TLVQTVP 288 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC----------TTTEEEEEEECTTTTTE-EEEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec----------cCCEEEEEEEecCCCce-EEEEEEe
Confidence 973 443 22222110 1111001568999999999988765 3789999998 34543 3322111
Q ss_pred CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEecc
Q 012410 402 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 463 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd 463 (464)
. .| +.-+.++|+|||+.|+.++ .+++|.+++
T Consensus 289 ~---------~G----------------------~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 289 T---------GG----------------------KFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp E---------SS----------------------SSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred C---------CC----------------------CCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 0 00 1457899999999999887 566788774
No 225
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=6.6e-11 Score=119.55 Aligned_cols=144 Identities=19% Similarity=0.302 Sum_probs=114.4
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC--CCcEEEEEe-CCeEEEEeCC--Cce-EEEeccCCCCcCC
Q 012410 275 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR--GEL-VTSFEDHLLWHPD 348 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp--dgqllaS~s-D~TIklWd~~--Ge~-l~tl~gH~~~~~~ 348 (464)
.++++-..++|||+|..||+.++.+.+|..++..+.|.. ....+.|++ |||||+||++ ++. ...+++|..- +
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~-~- 119 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT-P- 119 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC-c-
Confidence 456677999999999999999999999999999999986 567788888 9999999983 553 3466677632 1
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEE-ccCCCCCCcccccCCCCCCcccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
..+++..-.+++|+.|.. .+. .|-.|-+||+...+- ++.+ ..|.+
T Consensus 120 --f~~ld~nck~~ii~~GtE------~~~-s~A~v~lwDvR~~qq~l~~~~eSH~D------------------------ 166 (376)
T KOG1188|consen 120 --FICLDLNCKKNIIACGTE------LTR-SDASVVLWDVRSEQQLLRQLNESHND------------------------ 166 (376)
T ss_pred --ceEeeccCcCCeEEeccc------ccc-CceEEEEEEeccccchhhhhhhhccC------------------------
Confidence 456666668899998864 122 378899999987665 6555 35665
Q ss_pred ccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEecc
Q 012410 427 IRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 427 ~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd 463 (464)
+|+.|-|+|.. +.|+|||.||.|-|.|
T Consensus 167 ----------DVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 167 ----------DVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred ----------cceeEEecCCCCCeEEeecccceEEeee
Confidence 99999999955 6899999999999987
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=7.8e-11 Score=124.45 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=74.1
Q ss_pred ceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 305 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
.|..++|||||+.||+-| |+.+||.|+. -+++-.++---.- .-.|+|||||++||.|++ |.-
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-----LLCvcWSPDGKyIvtGGE-----------DDL 355 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-----LLCVCWSPDGKYIVTGGE-----------DDL 355 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc-----eEEEEEcCCccEEEecCC-----------cce
Confidence 678899999999999999 9999999994 5665555443333 568999999999999986 999
Q ss_pred EEEEeCCCCeEEEEEccCCCCCCcccc
Q 012410 383 INVSSILTGKCLAKINATNCSPKVDDE 409 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~~~~~~~~~ 409 (464)
|-||.+..++.++-=+||.++|..+++
T Consensus 356 VtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 356 VTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred EEEEEeccceEEEeccccccceeeEee
Confidence 999999999999999999984444433
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=6.1e-10 Score=118.58 Aligned_cols=225 Identities=19% Similarity=0.250 Sum_probs=167.6
Q ss_pred ccCce---EEEEeCCCCcE-EEEecCCCcEEEEeCCCCeEEEEec-C-CCE------------------eEEEEe-----
Q 012410 185 LKWPG---FVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-D-KHV------------------QEIKIR----- 235 (464)
Q Consensus 185 ~~~~~---~VaFs~pdGk~-LaSgs~D~tiKlWdl~tg~~l~tl~-~-~~V------------------~~Vafs----- 235 (464)
+.+|. .+..+ |||++ ||+|-.--.||++|+.+-.+-..=+ + +.| +.|-|+
T Consensus 48 fe~p~ast~ik~s-~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 48 FEMPTASTRIKVS-PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred cCCccccceeEec-CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 44554 58887 89998 5778889999999998866543211 1 111 223331
Q ss_pred -----------------CC-------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 236 -----------------SS-------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 236 -----------------~s-------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
|+ .-..|.=+|++.|.-|..|.-....++.|..++- ++.|++|.+|+.|..||.+
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc-cceEEecccCceEEEecch
Confidence 11 1234777899999999999866678899998884 5667778899999999999
Q ss_pred CCcEEEEccc------C-----CCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 292 NAELMEVSRT------E-----FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 292 tg~~l~~l~g------h-----~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
+.....++.- | ...|+++.|+.||-.++.|. +|.|-|+|++..----..+|..-.| +..+.|-+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p---i~~l~~~~~ 282 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP---IKKLDWQDT 282 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc---eeeeccccc
Confidence 9876554422 2 23599999999999999999 9999999995332234567877665 788888665
Q ss_pred --CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccC
Q 012410 360 --QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 437 (464)
Q Consensus 360 --g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 437 (464)
++.|+|.- ...+||||-.||+-.+.+..-+ .
T Consensus 283 ~~q~~v~S~D------------k~~~kiWd~~~Gk~~asiEpt~-----------------------------------~ 315 (703)
T KOG2321|consen 283 DQQNKVVSMD------------KRILKIWDECTGKPMASIEPTS-----------------------------------D 315 (703)
T ss_pred CCCceEEecc------------hHHhhhcccccCCceeeccccC-----------------------------------C
Confidence 77888864 4789999999999988886544 5
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 438 ITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 438 V~slafspDg~~LaSgs~DgtVrl 461 (464)
|..+.|-|++=.+.+|.++..++-
T Consensus 316 lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 316 LNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCceeeecCCceEEEecCCCccee
Confidence 667788899999999998887754
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.2e-10 Score=123.27 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=118.3
Q ss_pred cccCce---EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCC
Q 012410 184 SLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 184 ~~~~~~---~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
..||.| .++++ .||..|||||.|.-+.|||.-.++++++++ || |+
T Consensus 46 L~GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-----------------------Tg--------Ht 93 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSIS-----------------------TG--------HT 93 (758)
T ss_pred hccccceecceeec-CCCCEEeecCCcceEEeecchhcceeeeee-----------------------cc--------cc
Confidence 445555 68997 799999999999999999998888877654 33 34
Q ss_pred cceeeEEEEccCCCeEEE-EeCCCeEEEEECCCC----------cEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEE
Q 012410 261 HRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA----------ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVA 327 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg----------~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIk 327 (464)
..+++|.|.|..+..+++ |..|+-|+|+|+... +.+....-|+..|.-++--|++ ..|-|++ ||||+
T Consensus 94 aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 94 ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCccee
Confidence 667888888877655555 679999999998852 2334566789999999999999 8999999 99999
Q ss_pred EEeCC--CceEEEeccCCCC---cC-CCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 328 VWNFR--GELVTSFEDHLLW---HP-DCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 328 lWd~~--Ge~l~tl~gH~~~---~~-~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
-.|++ -.|-....-|..- .+ .....++.+||. -.+||-|+. |--+||+|.
T Consensus 174 QyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs-----------dpfarLYD~ 230 (758)
T KOG1310|consen 174 QYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS-----------DPFARLYDR 230 (758)
T ss_pred eecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC-----------Cchhhhhhh
Confidence 99983 2343222211110 00 012568899995 456666654 888999994
No 229
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.23 E-value=1.5e-09 Score=118.13 Aligned_cols=254 Identities=14% Similarity=0.126 Sum_probs=161.5
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC--CCcccceeeccc
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP--DSGFALFESESL 185 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~--~~~~~l~~~~~~ 185 (464)
+..-+|+..+-..-... ......|.++.|+|+...|..++ ..+ ++|-+||++.++. ..........+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG---~y~------GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGG---CYN------GQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEee---ccC------ceEEEEEccCCCCCCCcccccccccCC
Confidence 36788886654222222 33455699999999988888765 344 7999999987776 222222222222
Q ss_pred cCceEEEEe-CCCCcEEEEecCCCcEEEEeCCCCeE------EEEec--------CCCEeEEEEeCCCceeEEEEEcCCC
Q 012410 186 KWPGFVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTM------LYSIS--------DKHVQEIKIRSSSHVPLKILSIEDG 250 (464)
Q Consensus 186 ~~~~~VaFs-~pdGk~LaSgs~D~tiKlWdl~tg~~------l~tl~--------~~~V~~Vafs~s~d~tIklWdi~tG 250 (464)
.....|.+- ++.+.-++|+|.||.|+.|++..-.+ +-+.. ...+..++|.|.... .=|--.+.|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 211133332 11224478889999999998764332 11111 235778888763111 111122223
Q ss_pred cEEE------------------EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcEEEEcccCCCceEEEEE
Q 012410 251 TVLK------------------VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 251 ~~l~------------------tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~l~~l~gh~~~v~sv~F 311 (464)
.+.+ ++.-|.+.+..|.|+|.+...+++++ |-++|||.-. .-..+-.+.-+...|.+++|
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 3222 22223467799999995444444444 9999999866 44455566667777999999
Q ss_pred cCCC-cEEEEEe-CCeEEEEeC-C--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 312 LYEN-QLFLTFR-NRTVAVWNF-R--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 312 spdg-qllaS~s-D~TIklWd~-~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
||-- -+||+.. ||+|-|||+ . -+.+.+..-+... .+-+.++++|++|+.|.. -|+|.++
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~-----l~~~~~s~~g~~lavGd~-----------~G~~~~~ 513 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPA-----LTRVRWSPNGKLLAVGDA-----------NGTTHIL 513 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccccccc-----cceeecCCCCcEEEEecC-----------CCcEEEE
Confidence 9876 5788888 999999998 2 3344444444332 466888999999999976 8999999
Q ss_pred eCC
Q 012410 387 SIL 389 (464)
Q Consensus 387 di~ 389 (464)
++.
T Consensus 514 ~l~ 516 (555)
T KOG1587|consen 514 KLS 516 (555)
T ss_pred EcC
Confidence 984
No 230
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=1.8e-10 Score=128.84 Aligned_cols=149 Identities=9% Similarity=0.052 Sum_probs=126.3
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEc
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~ 270 (464)
+-++ ++--++++|+.-+.|-+|+.. +. -.++ .+.+|-+.++++.|+.
T Consensus 139 ~g~s-~~~~~i~~gsv~~~iivW~~~-~d-------------------n~p~------------~l~GHeG~iF~i~~s~ 185 (967)
T KOG0974|consen 139 IGDS-AEELYIASGSVFGEIIVWKPH-ED-------------------NKPI------------RLKGHEGSIFSIVTSL 185 (967)
T ss_pred Eecc-CcEEEEEeccccccEEEEecc-cc-------------------CCcc------------eecccCCceEEEEEcc
Confidence 5565 788899999999999999864 11 1112 2344556778999988
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCC
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPD 348 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~ 348 (464)
++.++++.|+|.+||||++.+++-+. +.=||+..||.+.|+|. .++|++ |-|.++|+..|+.+..+++|...+
T Consensus 186 -dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~-- 260 (967)
T KOG0974|consen 186 -DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKG-- 260 (967)
T ss_pred -CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcc--
Confidence 57778888999999999999998776 77899999999999999 899999 999999999999999999999986
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
+|.++..++.-.++++.. |+++|+||+.+
T Consensus 261 --iw~~~~~~~~~~~vT~g~-----------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 261 --IWKIAVPIGVIIKVTGGN-----------DSTLKLWDLNG 289 (967)
T ss_pred --eeEEEEcCCceEEEeecc-----------Ccchhhhhhhc
Confidence 899999999999999986 99999999754
No 231
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.23 E-value=2.2e-09 Score=121.83 Aligned_cols=286 Identities=15% Similarity=0.155 Sum_probs=178.8
Q ss_pred eecccccEeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccc----cC
Q 012410 113 FSRETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL----KW 187 (464)
Q Consensus 113 ~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~----~~ 187 (464)
|+ ..|.++..|.. |...|..++.++.- ..++| +++| ++||+|+.+.=.-.+ .-+.++.. +-
T Consensus 1034 W~-p~G~lVAhL~E-hs~~v~k~a~s~~~~s~Fvs----gS~D------GtVKvW~~~k~~~~~--~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHE-HSSAVIKLAVSSEHTSLFVS----GSDD------GTVKVWNLRKLEGEG--GSARSELTYSPEGS 1099 (1431)
T ss_pred CC-ccceEeehhhh-ccccccceeecCCCCceEEE----ecCC------ceEEEeeehhhhcCc--ceeeeeEEEeccCC
Confidence 65 78999999955 66666677766655 88888 6788 899999984322111 11111111 11
Q ss_pred -ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcC-CCcEEEEEeeCCcceee
Q 012410 188 -PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKK 265 (464)
Q Consensus 188 -~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~-tG~~l~tl~~~~~~~~~ 265 (464)
...|.+- ++|..+|-|+.||.|++.++..++--+. +-.. +++-|.+ .|..+ .+.+
T Consensus 1100 r~~~vt~~-~~~~~~Av~t~DG~v~~~~id~~~~~~~-----~~~~---------~ri~n~~~~g~vv-~m~a------- 1156 (1431)
T KOG1240|consen 1100 RVEKVTMC-GNGDQFAVSTKDGSVRVLRIDHYNVSKR-----VATQ---------VRIPNLKKDGVVV-SMHA------- 1156 (1431)
T ss_pred ceEEEEec-cCCCeEEEEcCCCeEEEEEccccccccc-----eeee---------eecccccCCCceE-Eeec-------
Confidence 1258886 8999999999999999999876421111 0001 1111111 23221 1211
Q ss_pred EEEEccCCC-eEEEEeCCCeEEEEECCCCcEEEEccc--CCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEec
Q 012410 266 VDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 340 (464)
Q Consensus 266 V~F~~~~~~-~lla~s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~ 340 (464)
|...... .++.+-.-+-|-+||+++..-+.+++. .-+.|++++.+|.++.++.|. -|.+-+||++ +.++.+.+
T Consensus 1157 --~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1157 --FTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred --ccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 1111123 333355778899999998775554432 226899999999999999999 9999999997 88888765
Q ss_pred -cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 341 -DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 341 -gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
.|..++.. |+-.-+.|....++|++. +.-+-|-+||+++|.|-.+|...+.-|..-.+.++.
T Consensus 1235 ~P~~~~i~~--v~~~~~~~~~S~~vs~~~---------~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~------ 1297 (1431)
T KOG1240|consen 1235 HPARAPIRH--VWLCPTYPQESVSVSAGS---------SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN------ 1297 (1431)
T ss_pred CcccCCcce--EEeeccCCCCceEEEecc---------cCCCceeeeecccCcceEEEEcCCCCcchhhhcccc------
Confidence 23334221 444445555667777764 136889999999999999997764423222221111
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+..+.-+..+ ...+..-+..+++|+.|..||.||
T Consensus 1298 --------~~~kp~~~~~~-~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1298 --------DARKPDSLAGI-SCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred --------cCCCCCcccce-eeecccCCceeeecCCccceeecc
Confidence 01112222233 345555566899999999999998
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.22 E-value=5.4e-09 Score=105.12 Aligned_cols=169 Identities=12% Similarity=0.186 Sum_probs=129.0
Q ss_pred CcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----CceeEEEEEcC-CCcEEEEEeeCCcceeeEEEEccCCCeEEE--
Q 012410 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----SHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-- 278 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----~d~tIklWdi~-tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-- 278 (464)
..+.|||=..+.|+.++. ...|.+|.++++ -...|++|... +=+.+..+.....+.-=.+..|..+..+|+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 468899977788888887 788999999875 55688999887 444555554211121112223333455566
Q ss_pred EeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcCCCcEEEEEe-CCe-EEEEeC-CCceEEEeccCCCCcCCCCeeE
Q 012410 279 KQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRT-VAVWNF-RGELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~FspdgqllaS~s-D~T-IklWd~-~Ge~l~tl~gH~~~~~~~~v~s 353 (464)
|=.=|.|||-|+..-+. -.+...|...+..++.+-+|.++||+| .|| |||||. +|++++.|.--... ..|..
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A~iy~ 231 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR---ADIYC 231 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---heEEE
Confidence 33669999999887766 367789999999999999999999999 775 799999 79999999855443 23899
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
++||||+.+||.+|+ -|||.|+.+..
T Consensus 232 iaFSp~~s~LavsSd-----------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSD-----------KGTLHIFSLRD 257 (346)
T ss_pred EEeCCCccEEEEEcC-----------CCeEEEEEeec
Confidence 999999999999987 89999998754
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.22 E-value=3e-09 Score=110.69 Aligned_cols=249 Identities=14% Similarity=0.103 Sum_probs=153.5
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-- 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-- 237 (464)
.++.+-|..+.+..+.++... .-...++|+ |||++|..++.|++|-++|+.+++.+.++. +..-..|++|++
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~----~~h~~~~~s-~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG----APHAGLKFS-PDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGK 90 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST----TEEEEEE-T-T-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTT
T ss_pred CEEEEEECCCCeEEEEEcCCC----CceeEEEec-CCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCC
Confidence 477777877777654333211 002368897 999999999999999999999999999998 667899999985
Q ss_pred -------CceeEEEEEcCCCcEEEEEeeC-------CcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEE-Eccc
Q 012410 238 -------SHVPLKILSIEDGTVLKVFYHL-------LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME-VSRT 301 (464)
Q Consensus 238 -------~d~tIklWdi~tG~~l~tl~~~-------~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~-~l~g 301 (464)
...++.|+|.+|.+.++++.-. ..++..|..++. ...+++.- +-+.|-+-|....+.+. ....
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~-~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~ 169 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG-RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK 169 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS-SSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC-CCEEEEEEccCCeEEEEEeccccccceeeec
Confidence 3468999999999999988621 125566766664 33345454 34666666877654332 2222
Q ss_pred CCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEecc----CCC-----CcCCC-CeeEEEECCCCCEEEEEec
Q 012410 302 EFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFED----HLL-----WHPDC-NTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 302 h~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~g----H~~-----~~~~~-~v~svafSpDg~~LaSgs~ 368 (464)
-...+....|+|+|++|+.+. +..|-++|. +++++..+.- |.. .|+.+ .||.. +-.+...++.-.
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~--~~~~~~~~~~ig 247 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWAT--SGLGYFAIPLIG 247 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEE--EBSSSSEEEEEE
T ss_pred ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEee--ccccceeccccc
Confidence 234678899999999877754 779999999 6888876642 221 11111 12222 223344333222
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
...+.+||..+.+.++++..... . .-+.-+||++
T Consensus 248 -----------~~~v~v~d~~~wkvv~~I~~~G~----------------------------------g-lFi~thP~s~ 281 (369)
T PF02239_consen 248 -----------TDPVSVHDDYAWKVVKTIPTQGG----------------------------------G-LFIKTHPDSR 281 (369)
T ss_dssp -------------TTT-STTTBTSEEEEEE-SSS----------------------------------S---EE--TT-S
T ss_pred -----------CCccccchhhcCeEEEEEECCCC----------------------------------c-ceeecCCCCc
Confidence 35677899999999999987653 4 3467799999
Q ss_pred EEEEe----eCCCcEEecc
Q 012410 449 EIYTG----NRHGLVHVWS 463 (464)
Q Consensus 449 ~LaSg----s~DgtVrlWd 463 (464)
.|+.. ...++|.|+|
T Consensus 282 ~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 282 YVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp EEEEE-TT-SSHT-EEEEE
T ss_pred cEEeeccCCCCCceEEEEE
Confidence 99887 5567888876
No 234
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=5.4e-10 Score=119.05 Aligned_cols=167 Identities=10% Similarity=0.099 Sum_probs=135.4
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeEEEEec------C---CCEeEE--EEeC------------C----------Ccee
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------D---KHVQEI--KIRS------------S----------SHVP 241 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~------~---~~V~~V--afs~------------s----------~d~t 241 (464)
||-+.++|+...|+-+|+||..++++...+. . ..+|.+ ..+| + .-+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4778899999999999999999988765443 1 223333 3344 1 3357
Q ss_pred EEEEEcCCCcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 242 LKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
|-+.++..|++-.+|.. |-.+|.++.... .-+-|-+++.|..+-.|+...++.+......+..|.++..+|||.+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 88889999999998883 334556665433 346777889999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC-----CCEEEEEec
Q 012410 320 TFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD-----QDLIISYCK 368 (464)
Q Consensus 320 S~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD-----g~~LaSgs~ 368 (464)
++| ++||+||+ ++|.+.+|+||... |+.+.|.-+ |+++.|+..
T Consensus 161 ~as-~~ik~~~~~~kevv~~ftgh~s~-----v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 161 TAS-RQIKVLDIETKEVVITFTGHGSP-----VRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred ecc-ceEEEEEccCceEEEEecCCCcc-----eEEEEEEEeccccccceeeeccc
Confidence 998 89999999 79999999999998 899999998 888888654
No 235
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.22 E-value=1.4e-10 Score=122.48 Aligned_cols=243 Identities=13% Similarity=0.092 Sum_probs=166.3
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEEecCCCEeEEEE----------------eCCCceeEEEEEcCCCcE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKI----------------RSSSHVPLKILSIEDGTV 252 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~tl~~~~V~~Vaf----------------s~s~d~tIklWdi~tG~~ 252 (464)
+|.++ .+..+|-+++.+..++-||+.+-.. +..+++..|...-+ -.++|+.+-|.+- .|++
T Consensus 19 ~v~w~-~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k-~~rV 96 (737)
T KOG1524|consen 19 CVDWS-SNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNK-SARV 96 (737)
T ss_pred eeccc-ccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecc-cchh
Confidence 56665 4666776666666677777654321 22222222222222 0146778777765 4777
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF- 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~- 331 (464)
-+...-|..-+.+-.|+| +|--|++.++||.||||. ++|-+..++......|++++|-|+..-++-..-+.+-|=-+
T Consensus 97 E~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~ 174 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLA 174 (737)
T ss_pred hhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecc
Confidence 777775545666667888 577789999999999999 99998888887778999999999998776655333333333
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
+-+.+ ..+.|..- |-++.++|..++|+||++ |-..|||| ..|+-|.+-.+|........+-
T Consensus 175 ~n~k~i-~WkAHDGi-----iL~~~W~~~s~lI~sgGE-----------D~kfKvWD-~~G~~Lf~S~~~ey~ITSva~n 236 (737)
T KOG1524|consen 175 ANSKII-RWRAHDGL-----VLSLSWSTQSNIIASGGE-----------DFRFKIWD-AQGANLFTSAAEEYAITSVAFN 236 (737)
T ss_pred ccccee-EEeccCcE-----EEEeecCccccceeecCC-----------ceeEEeec-ccCcccccCChhccceeeeeec
Confidence 33333 57788876 789999999999999986 99999999 5899888877777533333333
Q ss_pred CCCCCCccccccccccccc-cccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 411 GSSSTGKSKKLNKSSYIRS-TVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
++.. -.-..+++.++.+ .++ .|..++|||||..++.|...|.|-
T Consensus 237 pd~~--~~v~S~nt~R~~~p~~G----SifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 237 PEKD--YLLWSYNTARFSSPRVG----SIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred cccc--eeeeeeeeeeecCCCcc----ceEEEEEcCCCceeeccccCceEE
Confidence 3311 1223344444432 333 899999999999999999888763
No 236
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.21 E-value=4.2e-08 Score=101.71 Aligned_cols=259 Identities=12% Similarity=0.106 Sum_probs=159.0
Q ss_pred CCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC----------CCcEEEEeCCCCeEEE
Q 012410 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLY 222 (464)
Q Consensus 153 ddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~----------D~tiKlWdl~tg~~l~ 222 (464)
..|+++. .++.+-|..+++..++.+ .+ ..|..+ +| |||+.|..+.. +..|.|||++|++.+.
T Consensus 20 ~~~~~~~-~~v~ViD~~~~~v~g~i~---~G--~~P~~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 20 PGHFAAT-TQVYTIDGEAGRVLGMTD---GG--FLPNPV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred CcccccC-ceEEEEECCCCEEEEEEE---cc--CCCcee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 3456666 677788888888764333 22 234455 87 89998877665 7899999999999998
Q ss_pred EecC--C-------CEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCC
Q 012410 223 SISD--K-------HVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 283 (464)
Q Consensus 223 tl~~--~-------~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~ 283 (464)
.+.- . .-..+++||+ .+..|-+.|+++++.+.+..-..+ +.+--.+ ++...+-+.|+
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~--~~vy~t~--e~~~~~~~~Dg 167 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC--YHIFPTA--NDTFFMHCRDG 167 (352)
T ss_pred EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC--cEEEEec--CCccEEEeecC
Confidence 8761 1 2347778874 367899999999999998862101 1111000 11111222222
Q ss_pred eEEEEEC-CCCcEE----EEcccCC----CceEEEEEcC-CCcEEEEEeCCeEEEEeCCC------ceEEEeccC---CC
Q 012410 284 NLQILDV-RNAELM----EVSRTEF----MTPSAFIFLY-ENQLFLTFRNRTVAVWNFRG------ELVTSFEDH---LL 344 (464)
Q Consensus 284 tIkIWDv-~tg~~l----~~l~gh~----~~v~sv~Fsp-dgqllaS~sD~TIklWd~~G------e~l~tl~gH---~~ 344 (464)
...---+ .+|+.. .++.+.. ..+ .|++ ||+++-.+..|+|.+=|+.| +.+.++... ..
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccc
Confidence 2221111 122211 1111211 223 4565 77776555569999999643 233333322 24
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
|.|.- ..-++++|||+.|.-......+.. -....+.|-++|..|++.++.+.--.
T Consensus 245 wrP~g-~q~ia~~~dg~~lyV~~~~~~~~t-hk~~~~~V~ViD~~t~kvi~~i~vG~----------------------- 299 (352)
T TIGR02658 245 WRPGG-WQQVAYHRARDRIYLLADQRAKWT-HKTASRFLFVVDAKTGKRLRKIELGH----------------------- 299 (352)
T ss_pred cCCCc-ceeEEEcCCCCEEEEEecCCcccc-ccCCCCEEEEEECCCCeEEEEEeCCC-----------------------
Confidence 66543 345999999999987432000000 01124689999999999999986422
Q ss_pred ccccccccccccCEEEEEEcCCCC-EEEEee-CCCcEEecc
Q 012410 425 SYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 463 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~-~LaSgs-~DgtVrlWd 463 (464)
.+++|+|||||+ .|+..+ .+++|.+-|
T Consensus 300 ------------~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 300 ------------EIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred ------------ceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 789999999999 999888 578888765
No 237
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.21 E-value=1.3e-09 Score=108.74 Aligned_cols=224 Identities=13% Similarity=0.158 Sum_probs=151.7
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCC-----CEEEEEEeecCCCCcccceeeEEEEEec--cCCCCCc--ccc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNN-----DSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDSG--FAL 179 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g-----~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~~--~~l 179 (464)
++++-+ .+|+.+..-|+.|...+..+-|.|+- +.||| +.| ..|||-+- .++.... +..
T Consensus 77 iv~ld~-~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-----s~D-------~LRlWri~~ee~~~~~~~~L~~ 143 (364)
T KOG0290|consen 77 IVQLDE-DSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-----SSD-------FLRLWRIGDEESRVELQSVLNN 143 (364)
T ss_pred EEEEcc-CCCceeccCCCCCCCCccceEecCCccccCcchhhc-----ccC-------eEEEEeccCcCCceehhhhhcc
Confidence 566664 78999988889999999999999986 46777 223 78999885 3333110 011
Q ss_pred eeeccccCc-eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEee
Q 012410 180 FESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 180 ~~~~~~~~~-~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~ 258 (464)
.....+.-| .+..++..|-++|.++|-|-|..|||+++|.- |.+-..|--
T Consensus 144 ~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-----------------------------~~vkTQLIA 194 (364)
T KOG0290|consen 144 NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-----------------------------GTVKTQLIA 194 (364)
T ss_pred CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----------------------------cceeeEEEe
Confidence 111111111 25556667778999999999999999887621 111112222
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-cc-C-CCceEEEEEc-CCCcEEEEEe--CCeEEEEeCC
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RT-E-FMTPSAFIFL-YENQLFLTFR--NRTVAVWNFR 332 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~g-h-~~~v~sv~Fs-pdgqllaS~s--D~TIklWd~~ 332 (464)
|-..|+.|+|....-+.+++-|.||.+|++|++.-+.-... ++ . ....--++++ .|-+++||+- ...|.|-|++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 23556666666522244555689999999999987643321 11 1 1234456666 5677899988 4589999995
Q ss_pred --CceEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 333 --GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 333 --Ge~l~tl~gH~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
+..+.+|++|... ||.|++-|. ...|+|+++ |..+-|||+.+
T Consensus 275 ~P~tpva~L~~H~a~-----VNgIaWaPhS~~hictaGD-----------D~qaliWDl~q 319 (364)
T KOG0290|consen 275 VPCTPVARLRNHQAS-----VNGIAWAPHSSSHICTAGD-----------DCQALIWDLQQ 319 (364)
T ss_pred CCCcceehhhcCccc-----ccceEecCCCCceeeecCC-----------cceEEEEeccc
Confidence 8889999999987 899999996 457777765 99999999854
No 238
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.18 E-value=4.6e-10 Score=118.69 Aligned_cols=157 Identities=12% Similarity=0.153 Sum_probs=117.6
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEee
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~ 258 (464)
+-.++ |||.-|.+++.||.||+|. ++|-+..++- ...|+++++-|+ .+..||=+-.+ -++++ .+-
T Consensus 109 ~gRW~-~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n-~k~i~-WkA 184 (737)
T KOG1524|consen 109 SGRWS-PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN-SKIIR-WRA 184 (737)
T ss_pred hcccC-CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc-cceeE-Eec
Confidence 45676 8999999999999999998 5665544554 467999999774 33344433322 22332 222
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEE
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTS 338 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~t 338 (464)
|.+-+-+++|+++ ++.|++|++|-..|||| ..|+.+-+...|.-.+++|+|.|| +++|-+|=+|.|+
T Consensus 185 HDGiiL~~~W~~~-s~lI~sgGED~kfKvWD-~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~---------- 251 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQ-SNIIASGGEDFRFKIWD-AQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARF---------- 251 (737)
T ss_pred cCcEEEEeecCcc-ccceeecCCceeEEeec-ccCcccccCChhccceeeeeeccc-cceeeeeeeeeee----------
Confidence 3366789999997 56788899999999999 778888888899999999999999 8898888667763
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+.-... .|.++++||||..++.|+.
T Consensus 252 -~~p~~G----SifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 252 -SSPRVG----SIFNLSWSADGTQATCGTS 276 (737)
T ss_pred -cCCCcc----ceEEEEEcCCCceeecccc
Confidence 222111 2789999999999999885
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=7e-09 Score=110.21 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=103.8
Q ss_pred cEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 209 IYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
++.++|...++. +.+. ...+.+.+|||+ ....|.+||+.+|+... +......+..++|+| ++.+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCE
Confidence 566667654433 2222 345667777764 22358899999987643 322113446789998 4666
Q ss_pred EEE-EeCCCe--EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCe--EEEEeC-CCceEE-EeccCCCCc
Q 012410 276 LLV-KQENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNF-RGELVT-SFEDHLLWH 346 (464)
Q Consensus 276 lla-~s~D~t--IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~T--IklWd~-~Ge~l~-tl~gH~~~~ 346 (464)
|+. .+.|++ |.+||+.+++..+. ..+.......+|+|||+.|+..+ ++. |-++|+ +|+... ++.++..
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~-- 352 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRI-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN-- 352 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC--
Confidence 765 456665 77789998886554 33444566788999999887665 454 445567 466433 3344432
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.+.+|||||++|+-.+.. +....|.++|+.+|+.
T Consensus 353 -----~~~~~SpDG~~l~~~~~~--------~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 353 -----LGGSITPDGRSMIMVNRT--------NGKFNIARQDLETGAM 386 (448)
T ss_pred -----cCeeECCCCCEEEEEEec--------CCceEEEEEECCCCCe
Confidence 357899999999876541 1122455678888764
No 240
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=3e-09 Score=109.32 Aligned_cols=233 Identities=14% Similarity=0.175 Sum_probs=162.3
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC------CeEEEEec---CCCEeEEEEe--------CCCceeEEEEEc
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YTMLYSIS---DKHVQEIKIR--------SSSHVPLKILSI 247 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t------g~~l~tl~---~~~V~~Vafs--------~s~d~tIklWdi 247 (464)
++-++++.|| .||+.||||+.|.-++||++.. .+.+.... ..+|.+++|. ...+++|-+-||
T Consensus 56 ~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 56 TGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred ccccceeeec-cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 3434479998 6999999999999999999763 23332221 2579999993 458899999999
Q ss_pred CCCcEEEEEeeC--CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEE--EcccCCCceEEEEEcCCC-cEEEEE
Q 012410 248 EDGTVLKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LME--VSRTEFMTPSAFIFLYEN-QLFLTF 321 (464)
Q Consensus 248 ~tG~~l~tl~~~--~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~--~l~gh~~~v~sv~Fspdg-qllaS~ 321 (464)
++-+-|..+.+. -+-|+.++-+|. +..+++.+.|+.|-+||.+..+ .+. .+..-...-.++-|.|.- .+||+.
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~ 213 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN 213 (609)
T ss_pred ccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence 999999999864 235677777786 4566778899999999999876 222 122222345677899865 577777
Q ss_pred e-CCeEEEEeCC--CceEE------Eecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 322 R-NRTVAVWNFR--GELVT------SFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 322 s-D~TIklWd~~--Ge~l~------tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+ -+-+-|||.+ ...+. .|.. .+.| .++-|+|+|..+.+--. -..=-++|+.+.
T Consensus 214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~------M~~~~~~~G~Q~msiRR-----------~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW------MGSLWSPSGNQFMSIRR-----------GKCPLYFDFISQ 276 (609)
T ss_pred cccCCCCceeeccccchHHhhhccccCcccchhh------hheeeCCCCCeehhhhc-----------cCCCEEeeeecc
Confidence 7 8889999974 22221 2322 3345 46889999999987543 334457888888
Q ss_pred eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 392 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 392 ~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+|..--..|+ |.+.- ....+-+..|--|.. ++|||.|=-|++|..
T Consensus 277 R~~V~k~D~N--~~GY~-------------------------N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 277 RCFVLKSDHN--PNGYC-------------------------NIKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred cceeEeccCC--CCcce-------------------------eeeeeeeeeeeccee-eeccCcccceEEEec
Confidence 8854333443 12210 012677888876665 999999999999963
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=8.4e-09 Score=109.73 Aligned_cols=309 Identities=15% Similarity=0.217 Sum_probs=207.3
Q ss_pred cccceEEEEec----cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcc----c
Q 012410 87 KRTKVIEIVAA----RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS----L 158 (464)
Q Consensus 87 ~~s~v~~~~~a----g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~----L 158 (464)
.|.-..+-|.- |-+|++..+-| |+||.=..=.+++- ++|.+ |+=+-|||+-.+|+|.| +..... -
T Consensus 207 ~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R--F~Hp~-Vq~idfSP~EkYLVT~s---~~p~~~~~~d~ 279 (698)
T KOG2314|consen 207 ERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR--FYHPG-VQFIDFSPNEKYLVTYS---PEPIIVEEDDN 279 (698)
T ss_pred hhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHh--ccCCC-ceeeecCCccceEEEec---CCccccCcccC
Confidence 34445566665 99999998887 67885333233433 45877 89999999999999966 322222 2
Q ss_pred ceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE--EEecCCCEeEEEEeC
Q 012410 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKIRS 236 (464)
Q Consensus 159 ~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l--~tl~~~~V~~Vafs~ 236 (464)
.|+++.||||++|....+|+.+......|| .+.+| .|+|++|-=..| +|-|++...-.++ +++.-.+|+...++|
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP-~frWS-~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP 356 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWP-IFRWS-HDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSP 356 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccc-eEEec-cCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCC
Confidence 459999999999999999988876667777 66887 799999976654 6889986653333 355567788888887
Q ss_pred C-----------Cc--eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCC-eEEEEe----C---C---CeEEEEECCC
Q 012410 237 S-----------SH--VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQ----E---N---ENLQILDVRN 292 (464)
Q Consensus 237 s-----------~d--~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~-~lla~s----~---D---~tIkIWDv~t 292 (464)
. .+ ..+.|..+.+++.|++-+- +.|..+...=|.++ +|.+.- . . -++.|.-++-
T Consensus 357 ~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire 434 (698)
T KOG2314|consen 357 TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE 434 (698)
T ss_pred CcceEEEEcccccCCcceEEEEecCccceeeeccc--eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence 3 22 3577888889988887662 33422222223333 443321 1 1 1344555554
Q ss_pred CcE-EEEcccCCCceEEEEEcCCCcEEEEEe----CCeEEEEeCC-----CceEEEeccCCCCcCCCCeeEEEECCCCCE
Q 012410 293 AEL-MEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDL 362 (464)
Q Consensus 293 g~~-l~~l~gh~~~v~sv~FspdgqllaS~s----D~TIklWd~~-----Ge~l~tl~gH~~~~~~~~v~svafSpDg~~ 362 (464)
.+. +... .-...|-++++-|.|..|+.-+ -.||..+-+. -+++.+|.... .|.|.|||-|++
T Consensus 435 KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-------~N~vfwsPkG~f 506 (698)
T KOG2314|consen 435 KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-------ANTVFWSPKGRF 506 (698)
T ss_pred cCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-------cceEEEcCCCcE
Confidence 432 2221 1235788999999999988865 3488999873 23677776532 468999999999
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 363 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 363 LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
++.+.. .|.-|.+-..|..-..|..+ +|..++ .-+.+.
T Consensus 507 vvva~l--------~s~~g~l~F~D~~~a~~k~~--~~~eh~--------------------------------~at~ve 544 (698)
T KOG2314|consen 507 VVVAAL--------VSRRGDLEFYDTDYADLKDT--ASPEHF--------------------------------AATEVE 544 (698)
T ss_pred EEEEEe--------cccccceEEEecchhhhhhc--cCcccc--------------------------------ccccce
Confidence 999875 45678899999754344332 222100 345688
Q ss_pred EcCCCCEEEEeeCCC
Q 012410 443 YDEERNEIYTGNRHG 457 (464)
Q Consensus 443 fspDg~~LaSgs~Dg 457 (464)
++|.|++.+++|.-.
T Consensus 545 WDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSSW 559 (698)
T ss_pred ECCCCCEEEEeeehh
Confidence 999999999998633
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.5e-09 Score=113.81 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=165.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeC----------CCceeEEEEEc-CCCcEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRS----------SSHVPLKILSI-EDGTVLKV 255 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~----------s~d~tIklWdi-~tG~~l~t 255 (464)
.|.|. ..|..|+|||.|..|-|||...++....+. .++|-.-+|=| +.|+.|++=.+ ++|.|.+|
T Consensus 147 tV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t 225 (559)
T KOG1334|consen 147 TVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT 225 (559)
T ss_pred eeeec-ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecc
Confidence 79997 799999999999999999999988876665 45666666744 35566665543 57777755
Q ss_pred Ee--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc---ccCCC---ceEEEEEcCCCc-EEEEEe-CCe
Q 012410 256 FY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFM---TPSAFIFLYENQ-LFLTFR-NRT 325 (464)
Q Consensus 256 l~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l---~gh~~---~v~sv~Fspdgq-llaS~s-D~T 325 (464)
-. -|..++.+++.-|.+.-.++++++|+.++=.|++++..-..+ ..+.. ...+++..|-+. +||+++ |.-
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf 305 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF 305 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence 43 344788999988877889999999999999999998754433 22333 566788887766 888888 999
Q ss_pred EEEEeC---CCc----eEEEeccCCC-CcCCCCeeEEEEC-CCCCEEEEEecCCCccccccCCCCeEEEEeCC--CC---
Q 012410 326 VAVWNF---RGE----LVTSFEDHLL-WHPDCNTNNIYIT-SDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TG--- 391 (464)
Q Consensus 326 IklWd~---~Ge----~l~tl~gH~~-~~~~~~v~svafS-pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG--- 391 (464)
++++|. ..+ .+.+|.-|.+ -....+|..++|| ..+.+||||. |--|.|.+-. -|
T Consensus 306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn------------De~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN------------DEDIYLFNKSMGDGSEP 373 (559)
T ss_pred hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec------------ccceEEeccccccCCCC
Confidence 999995 233 1333333322 2112247889999 5678899986 6778888532 23
Q ss_pred -------eEEEE-EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 392 -------KCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 392 -------~cl~t-l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+.++. ++||.+ .+..+.|. +|-|...+++|||.=|-|-+|+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN-----------------------------~~TVKgVN--FfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRN-----------------------------SRTVKGVN--FFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCcchhhccchhhccccc-----------------------------ccccceee--eccCccceEEecCccceEEEEe
Confidence 33444 778875 11223443 7899999999999999999997
No 243
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.6e-08 Score=103.28 Aligned_cols=167 Identities=11% Similarity=0.128 Sum_probs=118.2
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeCCCc--------eeEEEEEcC----------
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRSSSH--------VPLKILSIE---------- 248 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~s~d--------~tIklWdi~---------- 248 (464)
.||+. +.=-.+|++..|-+||++|-+ ++|.-.|+ ..+|.++||.|-.- .-|-||...
T Consensus 103 ~~aWh-qH~~~fava~nddvVriy~ks-st~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 103 GVAWH-QHIIAFAVATNDDVVRIYDKS-STCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIR 180 (445)
T ss_pred eEeec-hhhhhhhhhccCcEEEEeccC-CCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccc
Confidence 46664 444456778899999999954 46655554 68899999988311 357788653
Q ss_pred --CCcEEEEEeeCC-cceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C
Q 012410 249 --DGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 249 --tG~~l~tl~~~~-~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D 323 (464)
+--+++.|++.. -.|.++++.++ +..++.++ .|..|.|||+.+|+++-...-.-..++-+-|||||..|..+. |
T Consensus 181 ~~s~~~~qvl~~pgh~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGHNPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred cccccchhheeCCCCceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 112334445332 35689999884 66666677 889999999999998876533335677788999999999999 9
Q ss_pred CeEEEEeCC----CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 324 RTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 324 ~TIklWd~~----Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
++.+||+.+ -|..-...| . |....+||+|.+|.=.+
T Consensus 260 avfrlw~e~q~wt~erw~lgsg---r-----vqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKERWILGSG---R-----VQTACWSPCGSFLLFAC 299 (445)
T ss_pred ceeeeehhcccceecceeccCC---c-----eeeeeecCCCCEEEEEE
Confidence 999999642 222223333 3 77889999999887665
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=1.1e-08 Score=104.99 Aligned_cols=214 Identities=15% Similarity=0.147 Sum_probs=147.8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEe--------cCCCEeEEEEe------CCCceeEEEEEcCCCc----EEEEEee
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSI--------SDKHVQEIKIR------SSSHVPLKILSIEDGT----VLKVFYH 258 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl--------~~~~V~~Vafs------~s~d~tIklWdi~tG~----~l~tl~~ 258 (464)
++.+|.-.+.|..+...+.....+...+ ....|...+-. ..+++-+.+|.++.|- .+..+.-
T Consensus 68 ~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~ 147 (412)
T KOG3881|consen 68 ETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT 147 (412)
T ss_pred ceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeec
Confidence 3445555555666666665554443322 12233333332 1356677777777432 2222221
Q ss_pred CCcceeeEEEEccCCCeEEEEeCC--CeEEEEECCCCcEEEEcccC-----------CCceEEEEEcCC--CcEEEEEe-
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTE-----------FMTPSAFIFLYE--NQLFLTFR- 322 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D--~tIkIWDv~tg~~l~~l~gh-----------~~~v~sv~Fspd--gqllaS~s- 322 (464)
+ ..+..|.=.+.....+++|+.. ..++|||+++++ +++.+- .-|+.++.|.|. .+.||++.
T Consensus 148 g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~ 224 (412)
T KOG3881|consen 148 G-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR 224 (412)
T ss_pred C-CceeeeccCCCCCceEecCchhcccceeeeecccce--eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec
Confidence 1 2222332233334555668877 889999998884 444332 135668899998 99999999
Q ss_pred CCeEEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-Ecc
Q 012410 323 NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INA 399 (464)
Q Consensus 323 D~TIklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~g 399 (464)
-+.||++|. . -+.+.+|.=-.+. +.++...|+|++|..|-. -+-+..+|+.+|+.+.. ++|
T Consensus 225 ~hqvR~YDt~~qRRPV~~fd~~E~~-----is~~~l~p~gn~Iy~gn~-----------~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 225 YHQVRLYDTRHQRRPVAQFDFLENP-----ISSTGLTPSGNFIYTGNT-----------KGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred ceeEEEecCcccCcceeEeccccCc-----ceeeeecCCCcEEEEecc-----------cchhheecccCceeeccccCC
Confidence 999999998 3 4567777655555 789999999999999876 78899999999998876 888
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-++ .|.+|-.+|.++.|||++-|.-|||.|
T Consensus 289 ~tG----------------------------------sirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITG----------------------------------SIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccC----------------------------------CcceEEEcCCCceEEeeccceeEEEee
Confidence 776 889999999999999999999999987
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.02 E-value=2.1e-08 Score=107.17 Aligned_cols=148 Identities=11% Similarity=0.135 Sum_probs=120.0
Q ss_pred CCceeEEEEEcCCCcEEEEEee---CCcce------eeEEEEcc-----------CCC-eEEE-EeCCCeEEEEECCCCc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYH---LLHRN------KKVDFIEQ-----------FNE-KLLV-KQENENLQILDVRNAE 294 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~---~~~~~------~~V~F~~~-----------~~~-~lla-~s~D~tIkIWDv~tg~ 294 (464)
++|+-+|||+.++++..+.|.- ..... -.+..+|. .++ -+++ |-..|.|.++++..|+
T Consensus 12 ~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~ 91 (541)
T KOG4547|consen 12 TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGE 91 (541)
T ss_pred CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCe
Confidence 5689999999999999888762 21211 22222222 112 2344 5588999999999999
Q ss_pred EEEEcc--cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 012410 295 LMEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 295 ~l~~l~--gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
.-..+. .|...|.++..+.+-..|=|++ |..|-.|++ ++.....+.+-..- +.+++++|||++|+++|
T Consensus 92 it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~-----~~sl~is~D~~~l~~as--- 163 (541)
T KOG4547|consen 92 ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL-----VSSLCISPDGKILLTAS--- 163 (541)
T ss_pred EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc-----cceEEEcCCCCEEEecc---
Confidence 887665 6889999998899999999999 999999999 69998888887765 78999999999999985
Q ss_pred CccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 371 PEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
++|++||+++++-+.+|.||.+
T Consensus 164 ----------~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 164 ----------RQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred ----------ceEEEEEccCceEEEEecCCCc
Confidence 6899999999999999999997
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=4.5e-08 Score=100.67 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=156.1
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC------cccceeeccccCceEEEEeCCCCcEEEE
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS------GFALFESESLKWPGFVEFDDVNGKVLTY 203 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~------~~~l~~~~~~~~~~~VaFs~pdGk~LaS 203 (464)
+.|.+++|..+++.=+.+. .+.+ +.+....+..+.+.. +..+.+ +.+-..+- .|| .|+.
T Consensus 56 ~ris~l~~~~d~~tevl~~--r~~~------~~~~~~~~~E~~~~s~~~~~~~~~l~~----~~I~gl~~--~dg-~Lit 120 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNA--RSAD------DDLPKFVIEEFEISSSLDDAKTVSLGT----KSIKGLKL--ADG-TLIT 120 (412)
T ss_pred hhhhhheeecCCceeEeec--cccC------cccccccccCCcccccccccccccccc----ccccchhh--cCC-EEEE
Confidence 4567777777766655543 3233 333333333333221 111222 11224444 478 4556
Q ss_pred ecCCCcEEEEeCCCCeE----EEEec-CCCEeEEEEe---------CCCc--eeEEEEEcCCCcEEEEEeeC------C-
Q 012410 204 SAQDSIYKVFDLKNYTM----LYSIS-DKHVQEIKIR---------SSSH--VPLKILSIEDGTVLKVFYHL------L- 260 (464)
Q Consensus 204 gs~D~tiKlWdl~tg~~----l~tl~-~~~V~~Vafs---------~s~d--~tIklWdi~tG~~l~tl~~~------~- 260 (464)
|-.++.+.+|.++.+.. +..+. ...+..+.-. .... .-++|||++++ .++++.- +
T Consensus 121 c~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 121 CVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLG 198 (412)
T ss_pred EecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCcccc
Confidence 78899999999984431 11111 1122222211 1222 57999999987 4445420 1
Q ss_pred ----cceeeEEEEccC-CCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C
Q 012410 261 ----HRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R 332 (464)
Q Consensus 261 ----~~~~~V~F~~~~-~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~ 332 (464)
-+...+.|.|.+ +.+++++..=+.+|+||.+.+. .+..+.-....++++...|+|+++.++. -+.+...|. +
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~ 278 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG 278 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccC
Confidence 123678898854 4677778888999999999876 4444444446788999999999999999 999999999 5
Q ss_pred CceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 333 GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 333 Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
|+++.. |.|-+.. +.+|.-.|.+++|||++- |..|||.|++|-+.+.+.
T Consensus 279 ~kl~g~~~kg~tGs-----irsih~hp~~~~las~GL-----------DRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 279 GKLLGCGLKGITGS-----IRSIHCHPTHPVLASCGL-----------DRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred ceeeccccCCccCC-----cceEEEcCCCceEEeecc-----------ceeEEEeecccchhhhhh
Confidence 887765 8888877 889999999999999987 999999999998877654
No 247
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=3.2e-09 Score=109.21 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=112.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
-+.++ |.|++||.+-.++..-++++.. + ....|+|+...+- .+-..+.|.
T Consensus 67 ~~~~s-~~~~llAv~~~~K~~~~f~~~~-----------------~---~~~~kl~~~~~v~---------~~~~ai~~~ 116 (390)
T KOG3914|consen 67 LVLTS-DSGRLVAVATSSKQRAVFDYRE-----------------N---PKGAKLLDVSCVP---------KRPTAISFI 116 (390)
T ss_pred ccccC-CCceEEEEEeCCCceEEEEEec-----------------C---CCcceeeeEeecc---------cCcceeeee
Confidence 45564 6777777776666555555421 1 1145555543221 222556666
Q ss_pred ccCCCeEEE--EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEe-ccCCC
Q 012410 270 EQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-EDHLL 344 (464)
Q Consensus 270 ~~~~~~lla--~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl-~gH~~ 344 (464)
..+-.-+++ +++...+.+|.+..|.|. -.-||-..+..|++|||++.|+++. |..|||=..- ---+.+| -||..
T Consensus 117 ~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 117 REDTSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred eccceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence 643222333 468899999998885554 4457878899999999999999999 9999998863 2233333 48999
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
. |..++..++ ++|+|||- |+||++||+.+|+||.++.-
T Consensus 196 F-----VS~isl~~~-~~LlS~sG-----------D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 196 F-----VSTISLTDN-YLLLSGSG-----------DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred h-----eeeeeeccC-ceeeecCC-----------CCcEEEEecccCCcccccch
Confidence 8 888998876 55888875 99999999999999987743
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=4.1e-08 Score=99.85 Aligned_cols=290 Identities=12% Similarity=0.146 Sum_probs=172.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC----CCCcccceeecc--cc------CceEEEEeC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK----PDSGFALFESES--LK------WPGFVEFDD 195 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~----~~~~~~l~~~~~--~~------~~~~VaFs~ 195 (464)
..+.|-.|-|...|+.||+ |.-+ ||-+-..+-+..+ ...+++.|+.+. ++ -+..+++-+
T Consensus 24 eadiis~vef~~~Ge~Lat----Gdkg-----GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLAT----GDKG-----GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred hhcceeeEEeecccceEee----cCCC-----CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 4578999999999999999 3222 3555444434433 222344444321 11 111244432
Q ss_pred -CCCcEEEEecCCCcEEEEeCCCCeEEE---Eec----CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe-eCCcceeeE
Q 012410 196 -VNGKVLTYSAQDSIYKVFDLKNYTMLY---SIS----DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKV 266 (464)
Q Consensus 196 -pdGk~LaSgs~D~tiKlWdl~tg~~l~---tl~----~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~-~~~~~~~~V 266 (464)
-++-...-+..|+|||+|-+..-..-. .+. ...|.++..+--..+..- ++ -.|.+.+. .|.-++.++
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~---ve-a~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLE---VE-ASPRRVYANAHTYHINSI 170 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccce---ee-eeeeeeccccceeEeeee
Confidence 122223335679999999986433221 111 123434433211000000 01 33555555 345678999
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCC-CcEE--EEcccCCC-----ceEEEEEcCCC-cEEEEEe-CCeEEEEeCC--Cc
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRN-AELM--EVSRTEFM-----TPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GE 334 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l--~~l~gh~~-----~v~sv~Fspdg-qllaS~s-D~TIklWd~~--Ge 334 (464)
.+..+ ...+.+.+|--|.||++.- .++. -..+.|.| -+++.-|+|.- .+|+=+| -|+|||-|++ .-
T Consensus 171 S~NsD--~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 171 SVNSD--KETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eecCc--cceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 98874 5556667899999999764 3333 23455544 46777799864 5566566 9999999985 33
Q ss_pred eE---EEeccCCCCcCC-------CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC-CCCeEEEEEccCCCC
Q 012410 335 LV---TSFEDHLLWHPD-------CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI-LTGKCLAKINATNCS 403 (464)
Q Consensus 335 ~l---~tl~gH~~~~~~-------~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi-~tG~cl~tl~gh~~~ 403 (464)
|. +.|+.-..+... ..|..|-||++|++|+|-. --||||||+ ...+.+.+++-|...
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD------------yltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD------------YLTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec------------cceeEEEeccccCCcceEEeehHhH
Confidence 43 244433222110 1367899999999999863 389999999 778889999988740
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.+ +.++. .+.-+=..+.||-++..+.|||-...+|+.+
T Consensus 317 -r~kLc--------~lYEn----------D~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 317 -RSKLC--------SLYEN----------DAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred -HHHHH--------HHhhc----------cchhheeEEEEcCCcceEecccccceEEEec
Confidence 00010 10100 1112446789999999999999999999886
No 249
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.96 E-value=5.1e-10 Score=116.78 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=142.2
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
-+-|-.+|..|+++...+.-. ..|..|.|.. +++++|-...+.+.||| ..|..++.++.| ..|..+.|+|.--+|
T Consensus 150 KGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LH--neq~~AVAQK~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyHfLL 224 (545)
T KOG1272|consen 150 KGHLAAFDWVTKKLHFEINVM-ETVRDVTFLH--NEQFFAVAQKKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYHFLL 224 (545)
T ss_pred ccceeeeecccceeeeeeehh-hhhhhhhhhc--chHHHHhhhhceEEEec-CCCcEEeehhhc-Cchhhhcccchhhee
Confidence 345667788888887777532 5678899865 46666655567899999 899999999988 478889999999999
Q ss_pred EEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 319 LTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 319 aS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
++++ .|-.+-=|+ +|+++..|.--... +..+.-.|-...|-.|-. .|||-||.-...+.|.+
T Consensus 225 ~~~~~~G~L~Y~DVS~GklVa~~~t~~G~-----~~vm~qNP~NaVih~Ghs-----------nGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 225 VAASEAGFLKYQDVSTGKLVASIRTGAGR-----TDVMKQNPYNAVIHLGHS-----------NGTVSLWSPNSKEPLVK 288 (545)
T ss_pred eecccCCceEEEeechhhhhHHHHccCCc-----cchhhcCCccceEEEcCC-----------CceEEecCCCCcchHHH
Confidence 9999 999999999 69999888755554 445666777777766653 89999999999999999
Q ss_pred EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 397 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 397 l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|..|.+ .|.+||++|+|+++||.+.|..|+|||.
T Consensus 289 iLcH~g----------------------------------~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 289 ILCHRG----------------------------------PVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHhcCC----------------------------------CcceEEECCCCcEEeecccccceeEeee
Confidence 999987 8999999999999999999999999995
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.91 E-value=2.1e-09 Score=108.61 Aligned_cols=167 Identities=12% Similarity=0.094 Sum_probs=103.7
Q ss_pred CCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE-EEEe-CCeEEEEeC-CCceEEEeccCCCCcCC
Q 012410 273 NEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVWNF-RGELVTSFEDHLLWHPD 348 (464)
Q Consensus 273 ~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll-aS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~ 348 (464)
...++. ...|+.|++|++.+-+---........+.++.+||||+-| .++. |-.|.+|.+ +-++.. ..++.
T Consensus 60 s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~------~~~pK 133 (447)
T KOG4497|consen 60 SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL------LPHPK 133 (447)
T ss_pred ceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE------ecccc
Confidence 355666 4799999999999888665555556788999999999554 5555 999999998 444332 11233
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
.++..++|+|||++.|-.+.-| .-.-+.|..-+.-+.++.+.-.+-...+.+-+|+|+.+| .|
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRrD--------Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vw 196 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRRD--------CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VW 196 (447)
T ss_pred cCceeEEECCCCceeeeeeccc--------HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Ee
Confidence 4578899999999999887521 011222221111122222222221112233444444322 12
Q ss_pred cccccc----c---cCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 429 STVGEA----L---EDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 429 ~~~~~~----l---~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.++-|. - -.|-.++|||-+|.||-||.||.+|+=
T Consensus 197 d~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 197 DNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred cchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 211111 1 268899999999999999999999874
No 251
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.91 E-value=4.7e-08 Score=97.69 Aligned_cols=157 Identities=13% Similarity=0.173 Sum_probs=117.4
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE---EEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeCC-Cc
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GE 334 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~---l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~~-Ge 334 (464)
.+..+.++.+.+...|.++|-|-|--|||+++|.- ...|..|...|..++|+-+| ++|||.+ ||.||+.|++ -+
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 45577778887777888899999999999999854 45688999999999999765 5789989 9999999984 33
Q ss_pred eEE-EeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCCCCcccccC
Q 012410 335 LVT-SFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 335 ~l~-tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~~~~~~~~~ 411 (464)
--+ .+|+-+...+ .--+++++ |-.++|+-.. ....|-|-|+.. +.-++.|++|+.
T Consensus 231 HSTIIYE~p~~~~p---LlRLswnkqDpnymATf~~----------dS~~V~iLDiR~P~tpva~L~~H~a--------- 288 (364)
T KOG0290|consen 231 HSTIIYEDPSPSTP---LLRLSWNKQDPNYMATFAM----------DSNKVVILDIRVPCTPVARLRNHQA--------- 288 (364)
T ss_pred cceEEecCCCCCCc---ceeeccCcCCchHHhhhhc----------CCceEEEEEecCCCcceehhhcCcc---------
Confidence 222 3344332212 33344444 3345555433 246688899864 567899999997
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd~ 464 (464)
.|.++++.|.. ..|.|+++|..+-+||.
T Consensus 289 -------------------------~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 289 -------------------------SVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred -------------------------cccceEecCCCCceeeecCCcceEEEEec
Confidence 89999999965 57999999999999985
No 252
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=9e-08 Score=97.92 Aligned_cols=170 Identities=8% Similarity=0.072 Sum_probs=120.2
Q ss_pred CEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCc-ceeeEEEEccCCCeEEEEeCCCeEEEEECCC-C----
Q 012410 228 HVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLH-RNKKVDFIEQFNEKLLVKQENENLQILDVRN-A---- 293 (464)
Q Consensus 228 ~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~-~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g---- 293 (464)
.++.+|+++ ..|-+|++.|-.+ +|--.|++... .+.+++|-|.....++++.. +-|-||.+.. +
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence 355566654 4788999999876 77777875434 55999999976666666654 4577996542 1
Q ss_pred -------cEEEEcc--cCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC
Q 012410 294 -------ELMEVSR--TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 294 -------~~l~~l~--gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~ 361 (464)
-+.++++ || ..|.+..+.+||-.++++| |..|.|||+ +|.++.--.--... +.-+-|||||+
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg-----~slLkwSPdgd 251 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG-----FSLLKWSPDGD 251 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc-----eeeEEEcCCCC
Confidence 1334443 45 6899999999999999999 999999999 58775433111122 56789999999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeC-CCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEE
Q 012410 362 LIISYCKAEPEDQWMEGSAGSINVSSI-LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 440 (464)
Q Consensus 362 ~LaSgs~~~~~~~~~~s~DgtIklWdi-~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 440 (464)
+|..+.. |++.+||+. ++-.|.+-+-+.. .|..
T Consensus 252 ~lfaAt~-----------davfrlw~e~q~wt~erw~lgsg-----------------------------------rvqt 285 (445)
T KOG2139|consen 252 VLFAATC-----------DAVFRLWQENQSWTKERWILGSG-----------------------------------RVQT 285 (445)
T ss_pred EEEEecc-----------cceeeeehhcccceecceeccCC-----------------------------------ceee
Confidence 9999886 999999953 3334444332322 6788
Q ss_pred EEEcCCCCEEE
Q 012410 441 LFYDEERNEIY 451 (464)
Q Consensus 441 lafspDg~~La 451 (464)
-.+||+|..|.
T Consensus 286 acWspcGsfLL 296 (445)
T KOG2139|consen 286 ACWSPCGSFLL 296 (445)
T ss_pred eeecCCCCEEE
Confidence 88889988654
No 253
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.89 E-value=1e-07 Score=96.16 Aligned_cols=216 Identities=10% Similarity=0.051 Sum_probs=142.9
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
+..-||+ +|++.+|-+-+...+-|+.....++ -+...+|..|...+..|+
T Consensus 13 itchAwn-~drt~iAv~~~~~evhiy~~~~~~~-----------------------------w~~~htls~Hd~~vtgvd 62 (361)
T KOG1523|consen 13 ITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADL-----------------------------WEPAHTLSEHDKIVTGVD 62 (361)
T ss_pred eeeeeec-CCCceEEeccCCceEEEEEecCCCC-----------------------------ceeceehhhhCcceeEEe
Confidence 3467887 7999999888888888776543221 233455654446677788
Q ss_pred EEccCCCeEEEEeCCCeEEEEEC-CCCcEEE--EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCC
Q 012410 268 FIEQFNEKLLVKQENENLQILDV-RNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL 343 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv-~tg~~l~--~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~ 343 (464)
+.|. ..+|.+++.|.+-.+|.. ..|+-.. +|.-|.-....|-++|..+.||.+| -+.|-||-+++|-=-=-..|.
T Consensus 63 Wap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi 141 (361)
T KOG1523|consen 63 WAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI 141 (361)
T ss_pred ecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh
Confidence 8884 468999999999999998 4454332 3445677889999999999999999 999999998766311111222
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
..-....|.++.+.|++-+||.||. |+..|++.. -|++=...| ..++-|+...=+-+
T Consensus 142 kkPirStv~sldWhpnnVLlaaGs~-----------D~k~rVfSa-------yIK~Vdekp---ap~pWgsk~PFG~l-- 198 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPNNVLLAAGST-----------DGKCRVFSA-------YIKGVDEKP---APTPWGSKMPFGQL-- 198 (361)
T ss_pred CCccccceeeeeccCCcceeccccc-----------CcceeEEEE-------eeeccccCC---CCCCCccCCcHHHH--
Confidence 2111123889999999999999987 999999874 222222111 01111110000000
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
|....+.- .+|..|.|||+|+.||=.+.|.+|.+
T Consensus 199 m~E~~~~g----gwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 199 MSEASSSG----GWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred HHhhccCC----CceeeeEeCCCCCEeeEecCCCceEE
Confidence 00000111 18999999999999999999999875
No 254
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.89 E-value=3.5e-09 Score=73.88 Aligned_cols=39 Identities=26% Similarity=0.645 Sum_probs=37.7
Q ss_pred CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 391 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 391 G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
|+|++++++|++ .|++|+|+|+++.|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~----------------------------------~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS----------------------------------SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS----------------------------------SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC----------------------------------cEEEEEEecccccceeeCCCCEEEEEC
Confidence 689999999997 999999999999999999999999997
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.89 E-value=2.2e-06 Score=87.91 Aligned_cols=246 Identities=13% Similarity=0.208 Sum_probs=143.5
Q ss_pred ccceeehhcc----CCeEEeeecccc-cEeeEeecC--CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec
Q 012410 97 ARDIVFALAH----SGVCAAFSRETN-RRICFLNVS--PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (464)
Q Consensus 97 ag~~l~~l~~----~g~~~~~~~~~g-~~l~~ln~~--~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~ 169 (464)
.+++|.+..+ .|.+.+|.+... -.|..++.. ....--.|+++|+|+.|+++. ... .++.+..+.
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van--y~~-------g~v~v~~l~ 117 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN--YGG-------GSVSVFPLD 117 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE--TTT-------TEEEEEEEC
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE--ccC-------CeEEEEEcc
Confidence 4666666665 568889986664 233333221 223345799999999998844 233 367777775
Q ss_pred c-CCCCCccccee---------eccccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeE-EEEecCCCEeEEEEeCC
Q 012410 170 R-GKPDSGFALFE---------SESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTM-LYSISDKHVQEIKIRSS 237 (464)
Q Consensus 170 ~-G~~~~~~~l~~---------~~~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~-l~tl~~~~V~~Vafs~s 237 (464)
. |.+......+. ...-.||-.|.|+ |||++|.... ....|.++++..... |.. +..+.
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-----~~~~~---- 187 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTP-----VDSIK---- 187 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-----EEEEE----
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEE-----eeccc----
Confidence 4 55432211121 0123677799997 8999776542 223577777765431 100 11111
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECC--CCcEE--E---Eccc---CCCce
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVR--NAELM--E---VSRT---EFMTP 306 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~--tg~~l--~---~l~g---h~~~v 306 (464)
+..| ..=+-++|+|+ +..+.+ ...+++|-++++. +|++. + ++.. ....+
T Consensus 188 ---------~~~G----------~GPRh~~f~pd-g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 188 ---------VPPG----------SGPRHLAFSPD-GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp ---------CSTT----------SSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred ---------cccC----------CCCcEEEEcCC-cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 1111 12255677773 444434 4577888888877 55432 2 2211 12368
Q ss_pred EEEEEcCCCcEEEEEe--CCeEEEEeCC---CceE--EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 012410 307 SAFIFLYENQLFLTFR--NRTVAVWNFR---GELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 307 ~sv~FspdgqllaS~s--D~TIklWd~~---Ge~l--~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
..++++|||+.|..+. +.+|-+++++ |++. ..+.-...+ -+.++|+|||++|+.++. .
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-----Pr~~~~s~~g~~l~Va~~----------~ 312 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-----PRHFAFSPDGRYLYVANQ----------D 312 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-----EEEEEE-TTSSEEEEEET----------T
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-----ccEEEEeCCCCEEEEEec----------C
Confidence 8999999999766665 8899999982 5543 233221122 368999999999999886 3
Q ss_pred CCeEEEEeC--CCCeEEEE
Q 012410 380 AGSINVSSI--LTGKCLAK 396 (464)
Q Consensus 380 DgtIklWdi--~tG~cl~t 396 (464)
+++|.++++ .||+...+
T Consensus 313 s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTEEEEEEEETTTTEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEe
Confidence 788999866 68875443
No 256
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1.3e-06 Score=92.51 Aligned_cols=237 Identities=8% Similarity=0.002 Sum_probs=135.7
Q ss_pred EeccceeehhccCC--eEEeeec-ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 95 VAARDIVFALAHSG--VCAAFSR-ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 95 ~~ag~~l~~l~~~g--~~~~~~~-~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
.+...+++...+.| .-++|=+ .+|...+.+..+ . .+-+-.|||||+.++..+.+.+.+ ..+.+.++.+|
T Consensus 152 ~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~------~~Iyv~dl~tg 223 (419)
T PRK04043 152 DWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERK------PTLYKYNLYTG 223 (419)
T ss_pred CceeeEEEEEEccCCCcceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCC------CEEEEEECCCC
Confidence 44455555544333 2233311 356666655443 3 678999999999644433344333 57888899888
Q ss_pred CCCCcccceeeccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCC
Q 012410 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDG 250 (464)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG 250 (464)
+.. ++.... +.....+|| |||+.|+.... ++. ..|-++|+.+|
T Consensus 224 ~~~---~lt~~~--g~~~~~~~S-PDG~~la~~~~~~g~------------------------------~~Iy~~dl~~g 267 (419)
T PRK04043 224 KKE---KIASSQ--GMLVVSDVS-KDGSKLLLTMAPKGQ------------------------------PDIYLYDTNTK 267 (419)
T ss_pred cEE---EEecCC--CcEEeeEEC-CCCCEEEEEEccCCC------------------------------cEEEEEECCCC
Confidence 763 222211 333357897 89988775432 221 12334445444
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCC--eEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEe-C--
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-N-- 323 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~--tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~s-D-- 323 (464)
+. +.+...........|+| ++.+|+..+ ..+ .|.+.|+.+|+..+... +.. ...|||||+.||-.+ .
T Consensus 268 ~~-~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred cE-EEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc----CceECCCCCEEEEEEcCCC
Confidence 42 22321111223456777 466666654 223 67788999998866543 322 247999999988776 3
Q ss_pred -----C--eEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 324 -----R--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 324 -----~--TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+ .|-+-|+. |+ .+.|.... . ..+..|||||+.|+-.+. .+....+-+.++ +|+-..
T Consensus 342 ~~~~~~~~~I~v~d~~~g~-~~~LT~~~-~-----~~~p~~SPDG~~I~f~~~--------~~~~~~L~~~~l-~g~~~~ 405 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDY-IRRLTANG-V-----NQFPRFSSDGGSIMFIKY--------LGNQSALGIIRL-NYNKSF 405 (419)
T ss_pred cccCCCCcEEEEEECCCCC-eEECCCCC-C-----cCCeEECCCCCEEEEEEc--------cCCcEEEEEEec-CCCeeE
Confidence 2 56666874 55 45565542 1 235789999998877654 122334667776 555444
Q ss_pred EE
Q 012410 396 KI 397 (464)
Q Consensus 396 tl 397 (464)
.|
T Consensus 406 ~l 407 (419)
T PRK04043 406 LF 407 (419)
T ss_pred Ee
Confidence 44
No 257
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=9.5e-09 Score=109.19 Aligned_cols=169 Identities=13% Similarity=0.145 Sum_probs=128.0
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE-cccCCCceEEEEEcC--CCcEEEEEe-CCeEEEE
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~Fsp--dgqllaS~s-D~TIklW 329 (464)
+.|++|.+-|..++|++ +|+.|++||+|--+-|||...-++++. -.||+.-|.++-|.| ..++++|+. |..|||.
T Consensus 44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 45778888899999998 477777789999999999999888875 469999999999997 467899999 9999999
Q ss_pred eCCC-----------ceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 330 NFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 330 d~~G-----------e~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
|++- +.+..+..|+.. |..||--|++ ..+-|+|+ |||||=.|+..
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~r-----VKria~~p~~PhtfwsasE-----------DGtirQyDiRE------- 179 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDR-----VKRIATAPNGPHTFWSASE-----------DGTIRQYDIRE------- 179 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhh-----hhheecCCCCCceEEEecC-----------CcceeeecccC-------
Confidence 9841 235567789888 7789999998 78888775 99999999843
Q ss_pred ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEecc
Q 012410 398 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWS 463 (464)
Q Consensus 398 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd 463 (464)
.|...|.+...+. +.+-.++- -...+++.||... +||-|+.|-.+||+|
T Consensus 180 -ph~c~p~~~~~~~---------------l~ny~~~l-ielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 180 -PHVCNPDEDCPSI---------------LVNYNPQL-IELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred -CccCCccccccHH---------------HHHhchhh-heeeeeeecCCCCceEEecCCCchhhhhh
Confidence 3443333322111 11111111 1456799999775 789999999999987
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.87 E-value=1.9e-06 Score=88.52 Aligned_cols=205 Identities=14% Similarity=0.119 Sum_probs=124.6
Q ss_pred eEEEEEeccCCCCCcccceeecccc-CceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEe-------EE
Q 012410 162 STKIEYIRRGKPDSGFALFESESLK-WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQ-------EI 232 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~-~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~-------~V 232 (464)
.+.-.|..+|+. +|+...-. ....++.+ ++ .+..++.|+.+..+|.++|+.+.... ...+. ..
T Consensus 76 ~v~a~d~~tG~~-----~W~~~~~~~~~~~p~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~ 147 (377)
T TIGR03300 76 TVVALDAETGKR-----LWRVDLDERLSGGVGAD--GG-LVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGL 147 (377)
T ss_pred eEEEEEccCCcE-----eeeecCCCCcccceEEc--CC-EEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCE
Confidence 566667778875 33322111 11134442 44 55567889999999999999885543 12111 11
Q ss_pred EEeCCCceeEEEEEcCCCcEEEEEeeCCcce-----eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-----
Q 012410 233 KIRSSSHVPLKILSIEDGTVLKVFYHLLHRN-----KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE----- 302 (464)
Q Consensus 233 afs~s~d~tIklWdi~tG~~l~tl~~~~~~~-----~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh----- 302 (464)
.+-+..++.|..||.++|+.+..++...... -+... .++.++++..++.+..+|+.+|+.+-.....
T Consensus 148 v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 148 VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 2223567889999999999998876321110 11222 1367777888999999999999876432211
Q ss_pred CC--ceEEE---EEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 012410 303 FM--TPSAF---IFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 376 (464)
Q Consensus 303 ~~--~v~sv---~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~ 376 (464)
.. ....+ ....++.++++..++.+..+|. +|+.+-+.+.. .+ .+. ..++..|..++.
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~~------~~p--~~~~~~vyv~~~-------- 287 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-SY------QGP--AVDDNRLYVTDA-------- 287 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-Cc------cCc--eEeCCEEEEECC--------
Confidence 00 00001 0113455555444999999999 79988766521 11 112 224556655554
Q ss_pred cCCCCeEEEEeCCCCeEEEEE
Q 012410 377 EGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 377 ~s~DgtIklWdi~tG~cl~tl 397 (464)
||.|..+|..+|+.+...
T Consensus 288 ---~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 ---DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ---CCeEEEEECCCCcEEEcc
Confidence 899999999999987655
No 259
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.87 E-value=9.8e-09 Score=108.89 Aligned_cols=105 Identities=19% Similarity=0.307 Sum_probs=92.1
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
..+.|+-=|-+-.| .+...+|+| ++..|+.-|.|+.+||+|..+-+++-+.+.-+.....|.|||||+
T Consensus 278 ~~rNPv~~w~~~~g-----------~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 278 KTRNPVARWHIGEG-----------SINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccCCccceeEeccc-----------cccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc
Confidence 34567777777554 446778999 566666689999999999999999999999999999999999999
Q ss_pred EEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECC
Q 012410 317 LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS 358 (464)
Q Consensus 317 llaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSp 358 (464)
+||+|+ |--|.||.+ +++.+..=+||..| |+.|+|-|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSW-----Vs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSW-----VSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccccccc-----eeeEeecc
Confidence 999999 999999999 69999999999999 89999985
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.2e-06 Score=93.73 Aligned_cols=278 Identities=14% Similarity=0.170 Sum_probs=168.5
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEE---eecCCCCcccceeeEEEEEecc
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVS---VYASDNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svS---a~~sddfs~L~~~ti~l~~i~~ 170 (464)
.|-.+-.+++.+.++.+.+++..++..+.+.+.. -++.+-|||-|.+|.+-= ...+.. -...-+.+|++++
T Consensus 41 ~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~---~~~pn~~v~~vet 114 (566)
T KOG2315|consen 41 AYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKN---ASNPNVLVYNVET 114 (566)
T ss_pred EEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCC---CCCCceeeeeecc
Confidence 3444777788889999999998888544444332 489999999999998721 111111 0114456899988
Q ss_pred CCCCCccc---------cee-----------ec----------------cccCceEEEEeCCCCc--EE-----EEecCC
Q 012410 171 GKPDSGFA---------LFE-----------SE----------------SLKWPGFVEFDDVNGK--VL-----TYSAQD 207 (464)
Q Consensus 171 G~~~~~~~---------l~~-----------~~----------------~~~~~~~VaFs~pdGk--~L-----aSgs~D 207 (464)
|.....++ -|. .+ +..++...++| |.++ .| .+.+.=
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lS-pgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLS-PGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEec-CCCCCceEEEEccCCCCCC
Confidence 66532111 011 00 12222235554 5432 11 123444
Q ss_pred CcEEEEeCCCCeE-----EEEec-CC-----------CEeEEEEeC------C--CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 208 SIYKVFDLKNYTM-----LYSIS-DK-----------HVQEIKIRS------S--SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 208 ~tiKlWdl~tg~~-----l~tl~-~~-----------~V~~Vafs~------s--~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
..+|||.+.-+.. .+++- .+ .+.-|+.+- + +..++.+.+++.-+|...|... ++
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~-GP 272 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE-GP 272 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC-CC
Confidence 5566665431110 01211 11 122222211 1 3468899999866677677643 78
Q ss_pred eeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe----CCeEEEEeC-CCceE
Q 012410 263 NKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF-RGELV 336 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s----D~TIklWd~-~Ge~l 336 (464)
|.+|.|++..-+.-++ |-.=-.+-|+|+ .|..+..+.. ..=..+-|+|.|++|+-++ -|.|.+||+ +-+|+
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 8999999953333333 447778889995 4555554432 2234667999999877765 679999999 78899
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
.+++.-. ..-..|+|||++++++..+ |-=| -|..||||+. ||..+.
T Consensus 350 ~~~~a~~-------tt~~eW~PdGe~flTATTa-PRlr----vdNg~Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 350 AKFKAAN-------TTVFEWSPDGEYFLTATTA-PRLR----VDNGIKIWHY-TGSLLH 395 (566)
T ss_pred cccccCC-------ceEEEEcCCCcEEEEEecc-ccEE----ecCCeEEEEe-cCceee
Confidence 8887543 2358899999999998762 2222 3899999997 888765
No 261
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=3.9e-06 Score=79.49 Aligned_cols=205 Identities=17% Similarity=0.152 Sum_probs=128.5
Q ss_pred eEEEEEeccCCCCCcccceeeccc-cCceEE--EEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCE-eEEEE--
Q 012410 162 STKIEYIRRGKPDSGFALFESESL-KWPGFV--EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHV-QEIKI-- 234 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~-~~~~~V--aFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V-~~Vaf-- 234 (464)
++..+|.++|+. +|+...- ...+.+ ++ +++..|..++.++.+..||.++|+.+-+.. ...+ .....
T Consensus 4 ~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKE-----LWSYDLGPGIGGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp EEEEEETTTTEE-----EEEEECSSSCSSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred EEEEEECCCCCE-----EEEEECCCCCCCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence 555667667775 4443220 122234 44 244456666899999999999999885544 1111 00111
Q ss_pred ----eCCCceeEEEEEcCCCcEEEEE-eeC-----CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC
Q 012410 235 ----RSSSHVPLKILSIEDGTVLKVF-YHL-----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 304 (464)
Q Consensus 235 ----s~s~d~tIklWdi~tG~~l~tl-~~~-----~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~ 304 (464)
-...++.|..+|.+||+.+.+. ... ......+++ .++.++++..++.|..+|+++|+.+-....+..
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 1125569999999999999985 321 111123333 257888888899999999999999766544321
Q ss_pred c----------eEEEEEcCCCcEEEEEeCC-eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 012410 305 T----------PSAFIFLYENQLFLTFRNR-TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 372 (464)
Q Consensus 305 ~----------v~sv~FspdgqllaS~sD~-TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~ 372 (464)
. ..+-....++.++++..++ .+.+ |+ +|+.+-+..-+. +..+ ..+++..|+.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~-------~~~~-~~~~~~~l~~~~~---- 220 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKPISG-------IYSL-PSVDGGTLYVTSS---- 220 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEECSS--------ECEC-EECCCTEEEEEET----
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEecCCC-------ccCC-ceeeCCEEEEEeC----
Confidence 1 1233334466777766666 5888 99 688664333111 1221 4678888888875
Q ss_pred cccccCCCCeEEEEeCCCCeEEEE
Q 012410 373 DQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
|+.|..||+.||+.+.+
T Consensus 221 -------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 221 -------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -------TTEEEEEETTTTEEEEE
T ss_pred -------CCEEEEEECCCCCEEeE
Confidence 89999999999998754
No 262
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.81 E-value=4e-07 Score=91.97 Aligned_cols=202 Identities=11% Similarity=0.085 Sum_probs=148.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-eccccCceEEEEeCCCCcEEEEecCCC
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
+.|.+-+||+|+..+|+ ++.. +.+.|......++-. +.++ .++-+.+..|.++ |.+..|+++++|.
T Consensus 11 ~pitchAwn~drt~iAv----~~~~------~evhiy~~~~~~~w~--~~htls~Hd~~vtgvdWa-p~snrIvtcs~dr 77 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAV----SPNN------HEVHIYSMLGADLWE--PAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDR 77 (361)
T ss_pred CceeeeeecCCCceEEe----ccCC------ceEEEEEecCCCCce--eceehhhhCcceeEEeec-CCCCceeEccCCC
Confidence 56999999999999988 7777 788888766555322 2333 1244556689997 8999999999999
Q ss_pred cEEEEeC-CCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEE
Q 012410 209 IYKVFDL-KNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 287 (464)
Q Consensus 209 tiKlWdl-~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkI 287 (464)
.--||.. ..|+-..+| -| ..++ .-...|.++|. ..++++||.-+.|-+
T Consensus 78 nayVw~~~~~~~Wkptl------------------vL---------lRiN---rAAt~V~WsP~-enkFAVgSgar~isV 126 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTL------------------VL---------LRIN---RAATCVKWSPK-ENKFAVGSGARLISV 126 (361)
T ss_pred CccccccCCCCeeccce------------------eE---------EEec---cceeeEeecCc-CceEEeccCccEEEE
Confidence 9999986 333322121 11 1111 44578888884 568888999999999
Q ss_pred EECCCCcE----EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe----------------C---CCceEEEeccCC
Q 012410 288 LDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN----------------F---RGELVTSFEDHL 343 (464)
Q Consensus 288 WDv~tg~~----l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd----------------~---~Ge~l~tl~gH~ 343 (464)
|-.+.-+- .++-+.+..+|.++.+.|++-+||.|| |+..||.. - =|++...+...-
T Consensus 127 cy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g 206 (361)
T KOG1523|consen 127 CYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG 206 (361)
T ss_pred EEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC
Confidence 98665442 233345566789999999999999999 99999875 1 166676776667
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
.| |..|.|||+|..||=.+. |.+|.+=|-...
T Consensus 207 gw-----vh~v~fs~sG~~lawv~H-----------ds~v~~~da~~p 238 (361)
T KOG1523|consen 207 GW-----VHGVLFSPSGNRLAWVGH-----------DSTVSFVDAAGP 238 (361)
T ss_pred Cc-----eeeeEeCCCCCEeeEecC-----------CCceEEeecCCC
Confidence 78 889999999999998776 999999886433
No 263
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.78 E-value=3.4e-05 Score=74.69 Aligned_cols=211 Identities=14% Similarity=0.151 Sum_probs=142.5
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEe-CC------CceeEEEEEcCCCcEEEEEee--
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIR-SS------SHVPLKILSIEDGTVLKVFYH-- 258 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs-~s------~d~tIklWdi~tG~~l~tl~~-- 258 (464)
+..++|++-+|.++.+....+.|.-||..+++... +.......+++. ++ ....+.+.|.++|+....+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEET
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccC
Confidence 44788973388888888889999999998887643 222227777887 43 223456679999976655543
Q ss_pred ---CCcceeeEEEEccCCCeEEEEe-CC--------CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE-EEEe-CC
Q 012410 259 ---LLHRNKKVDFIEQFNEKLLVKQ-EN--------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NR 324 (464)
Q Consensus 259 ---~~~~~~~V~F~~~~~~~lla~s-~D--------~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll-aS~s-D~ 324 (464)
.......+++.++ +.+.++. .. +.|-.++.. ++...... ....+..++|+|||+.| ++-+ .+
T Consensus 81 ~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp TCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred CCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 2345588999885 5566643 22 456677766 66555443 35679999999999865 4556 88
Q ss_pred eEEEEeCC--Cc-e-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 325 TVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 325 TIklWd~~--Ge-~-----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
.|..++++ +. + +..+.+-... .-.+++.++|.+.++... .+.|.+.|.. |+.+..
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-----pDG~~vD~~G~l~va~~~-----------~~~I~~~~p~-G~~~~~ 219 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGY-----PDGLAVDSDGNLWVADWG-----------GGRIVVFDPD-GKLLRE 219 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCE-----EEEEEEBTTS-EEEEEET-----------TTEEEEEETT-SCEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcC-----CCcceEcCCCCEEEEEcC-----------CCEEEEECCC-ccEEEE
Confidence 88888872 43 2 2223332211 347999999999887654 7899999964 999998
Q ss_pred EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEE-cCCCCEEEEee
Q 012410 397 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGN 454 (464)
Q Consensus 397 l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf-spDg~~LaSgs 454 (464)
+.--.. .+++++| -||.++|+-.+
T Consensus 220 i~~p~~----------------------------------~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 220 IELPVP----------------------------------RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EE-SSS----------------------------------SEEEEEEESTTSSEEEEEE
T ss_pred EcCCCC----------------------------------CEEEEEEECCCCCEEEEEe
Confidence 865432 7899999 58988887544
No 264
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.78 E-value=9.4e-08 Score=108.97 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=125.0
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-------EEEEcccCCCceEEEEEcCCCcE
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LMEVSRTEFMTPSAFIFLYENQL 317 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-------~l~~l~gh~~~v~sv~Fspdgql 317 (464)
|+.+ |..+..|..|...+.+++-++.+...+++||.|||||+||.+.-+ +..+..-....+..+.+.+.|+.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 7775 888888875545566777777666788889999999999976521 33344434568889999999999
Q ss_pred EEEEe-CCeEEEEeCC---C-----ceEEEeccCCCCcCCCCeeEEEECCCCCE-EEEEecCCCccccccCCCCeEEEEe
Q 012410 318 FLTFR-NRTVAVWNFR---G-----ELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 318 laS~s-D~TIklWd~~---G-----e~l~tl~gH~~~~~~~~v~svafSpDg~~-LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+|.++ ||.|++-+++ + ++......|... +.|.--+|..+-+- ++.|.. .-+.|-.||
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g---~vv~m~a~~~~~~S~~lvy~T----------~~~~iv~~D 1179 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDG---VVVSMHAFTAIVQSHVLVYAT----------DLSRIVSWD 1179 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCC---ceEEeecccccccceeEEEEE----------eccceEEec
Confidence 99999 9999999873 2 233333334332 33555566654443 444443 157899999
Q ss_pred CCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 388 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 388 i~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+.+-.-+.+++..-. || .|+|++.+|-++.++.|..-|.+-+||+
T Consensus 1180 ~r~~~~~w~lk~~~~------------hG--------------------~vTSi~idp~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1180 TRMRHDAWRLKNQLR------------HG--------------------LVTSIVIDPWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred chhhhhHHhhhcCcc------------cc--------------------ceeEEEecCCceEEEEecCCceEEEEEe
Confidence 877666665544321 22 8999999999999999999999999995
No 265
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.77 E-value=6.2e-07 Score=91.06 Aligned_cols=279 Identities=11% Similarity=0.101 Sum_probs=175.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
--+|-.+..++.+++|+..+-+--|.+.-+.+. +-++.+||||+-+...|.| + -.+.+|.+.+.+..
T Consensus 61 ~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag-ls~~~WSPdgrhiL~tseF---~------lriTVWSL~t~~~~--- 127 (447)
T KOG4497|consen 61 CHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG-LSSISWSPDGRHILLTSEF---D------LRITVWSLNTQKGY--- 127 (447)
T ss_pred eeeeeeeeccceEEEEEeecceeEEEeccCCCc-ceeeeECCCcceEeeeecc---e------eEEEEEEeccceeE---
Confidence 346677888999999999999999999776655 8899999999655555544 4 56788998776642
Q ss_pred cceeeccccCce----EEEEeCCCCcEEEEecCCCcEEEEeCCCCe---------EEEEec--CCCEeEEEEeCCCceeE
Q 012410 178 ALFESESLKWPG----FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---------MLYSIS--DKHVQEIKIRSSSHVPL 242 (464)
Q Consensus 178 ~l~~~~~~~~~~----~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~---------~l~tl~--~~~V~~Vafs~s~d~tI 242 (464)
++.||- .++|. ||||+.|-++.- |-+.+- +++.+. +-....|-+||+ +.-+
T Consensus 128 ------~~~~pK~~~kg~~f~-~dg~f~ai~sRr------DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~~l 193 (447)
T KOG4497|consen 128 ------LLPHPKTNVKGYAFH-PDGQFCAILSRR------DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-GNWL 193 (447)
T ss_pred ------EecccccCceeEEEC-CCCceeeeeecc------cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-CcEE
Confidence 223333 69996 999999877653 333332 222222 223456677776 5668
Q ss_pred EEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC----c------------------------
Q 012410 243 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA----E------------------------ 294 (464)
Q Consensus 243 klWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg----~------------------------ 294 (464)
-+||.----.+...+ -.-.++.|+++| .|+.|++|+.|+.+|+.|--+= |
T Consensus 194 aVwd~~Leykv~aYe-~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYE-RGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred EEecchhhheeeeee-eccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 888753222222222 113568899988 4677778999999987443221 1
Q ss_pred ----EE----------------------------EEcccC------CCceEEEEEcCCCcEEEEEeCC---eEEEEeCC-
Q 012410 295 ----LM----------------------------EVSRTE------FMTPSAFIFLYENQLFLTFRNR---TVAVWNFR- 332 (464)
Q Consensus 295 ----~l----------------------------~~l~gh------~~~v~sv~FspdgqllaS~sD~---TIklWd~~- 332 (464)
|+ +.++.- +..+--++||+|.+++||-.|. .+-|||++
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 11 111100 1124457999999999997644 78899995
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 412 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~ 412 (464)
-++-+.|... .. |....+.|..-.|+-.-. .-.+.+|-..--.|+.. .-.
T Consensus 352 l~l~avLiQk-~p-----iraf~WdP~~prL~vctg-----------~srLY~W~psg~~~V~v--P~~----------- 401 (447)
T KOG4497|consen 352 LKLHAVLIQK-HP-----IRAFEWDPGRPRLVVCTG-----------KSRLYFWAPSGPRVVGV--PKK----------- 401 (447)
T ss_pred hhhhhhhhhc-cc-----eeEEEeCCCCceEEEEcC-----------CceEEEEcCCCceEEec--CCC-----------
Confidence 5544444432 22 778888998877766532 23477887533233321 000
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
| - .|.+|.+.-+|..|+-.+.|.
T Consensus 402 G-F---------------------~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 402 G-F---------------------NIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred C-c---------------------eeeeEEecCCCcEEEEEcCCc
Confidence 0 1 577777888888777776664
No 266
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=8.8e-06 Score=84.56 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=155.7
Q ss_pred EeccceeehhccCCeEEeeecccccEeeEeecCCCceEE----------EEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIR----------SLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 95 ~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~----------Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
+.+++.|.+.+.+|.+.++|..+|+.+-..+.....-+. ++.. .++.++. +..+ ..+.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v----~~~~------g~l~ 133 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYI----GSEK------GQVY 133 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEE----EcCC------CEEE
Confidence 345888899999999999999999998877553311110 0111 2334444 2233 4666
Q ss_pred EEEeccCCCCCcccceeeccccCce-EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC-C----------E--e
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-H----------V--Q 230 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~-~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~-~----------V--~ 230 (464)
-.|.++|+. +|+...-+.+. +.... +|+++ .++.|+.+.-.|.+||+.+-..... . + .
T Consensus 134 ald~~tG~~-----~W~~~~~~~~~ssP~v~--~~~v~-v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 134 ALNAEDGEV-----AWQTKVAGEALSRPVVS--DGLVL-VHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred EEECCCCCC-----cccccCCCceecCCEEE--CCEEE-EECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 678889986 34432111111 11221 56554 4677888999999999988665421 1 0 0
Q ss_pred EEEEeCCCceeEEEEEcCCCcEEEEEeeCCc-------ceeeEEEEcc-CCCeEEEEeCCCeEEEEECCCCcEEEEcccC
Q 012410 231 EIKIRSSSHVPLKILSIEDGTVLKVFYHLLH-------RNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 231 ~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~-------~~~~V~F~~~-~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh 302 (464)
...|-...++.+.-.|.++|+.+...+.... +...+.-.|. .++.+.+++.|+.+...|+.+|+.+-...
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-- 283 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-- 283 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec--
Confidence 0111124567788889999998876541100 0011111111 25778888899999999999998764322
Q ss_pred CCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 303 FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
...+..++. .++.+++...|+.+...|. +|+.+-....-..+. ..+.++ .+.+|..++. ||
T Consensus 284 ~~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~v--~~g~l~v~~~-----------~G 345 (394)
T PRK11138 284 YGSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPVL--YNGYLVVGDS-----------EG 345 (394)
T ss_pred CCCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCEE--ECCEEEEEeC-----------CC
Confidence 111112221 3555555555999999999 688765433211111 112222 2344555554 89
Q ss_pred eEEEEeCCCCeEEEEEcc
Q 012410 382 SINVSSILTGKCLAKINA 399 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~g 399 (464)
.|...|..||+.+.+.+-
T Consensus 346 ~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 346 YLHWINREDGRFVAQQKV 363 (394)
T ss_pred EEEEEECCCCCEEEEEEc
Confidence 999999999999987754
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=1.8e-06 Score=91.40 Aligned_cols=141 Identities=11% Similarity=0.122 Sum_probs=77.5
Q ss_pred EEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-e--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE
Q 012410 242 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-Q--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
|.++|+.+|+....... ...+...+|+| ++.+++.. + .+..|.++|+.+|+..+...+. .....-.|+|||+.|
T Consensus 215 Iyv~dl~tg~~~~lt~~-~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~-~~d~~p~~SPDG~~I 291 (419)
T PRK04043 215 LYKYNLYTGKKEKIASS-QGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP-GIDVNGNFVEDDKRI 291 (419)
T ss_pred EEEEECCCCcEEEEecC-CCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCCcEEEcccCC-CccCccEECCCCCEE
Confidence 34444444543332221 12334566777 45566553 2 3456778899999866543322 222344699999877
Q ss_pred EEEeC--C--eEEEEeCC-CceEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 319 LTFRN--R--TVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 319 aS~sD--~--TIklWd~~-Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+=.+| + .|-+.|+. |+..+ ++.+. + ...|||||+.||-.+....++ .......|.+-|+.+|+
T Consensus 292 ~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~-------~~~~SPDG~~Ia~~~~~~~~~--~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 292 VFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N-------NSSVSTYKNYIVYSSRETNNE--FGKNTFNLYLISTNSDY 360 (419)
T ss_pred EEEECCCCCceEEEEECCCCCeEeCccCCC--c-------CceECCCCCEEEEEEcCCCcc--cCCCCcEEEEEECCCCC
Confidence 66663 3 56677774 66533 33222 2 247999999998766411000 00011367777887776
Q ss_pred EEEEE
Q 012410 393 CLAKI 397 (464)
Q Consensus 393 cl~tl 397 (464)
- +.|
T Consensus 361 ~-~~L 364 (419)
T PRK04043 361 I-RRL 364 (419)
T ss_pred e-EEC
Confidence 3 444
No 268
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=4.9e-08 Score=99.34 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=114.1
Q ss_pred EeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-----cEEEEcccCC
Q 012410 229 VQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-----ELMEVSRTEF 303 (464)
Q Consensus 229 V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-----~~l~~l~gh~ 303 (464)
+..-.|+...+..|-|-|++||- .+.|. ...-|+...|.- .+..+..|..+|.|-..|++.+ .|.+.+- |.
T Consensus 223 i~gyhfs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~ 298 (425)
T KOG2695|consen 223 IMGYHFSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HD 298 (425)
T ss_pred cceeeecccccceeEEEEeeccc-ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cC
Confidence 44445566788889999999883 34454 225567777754 2344455779999999999986 4555544 55
Q ss_pred CceEEEEEcC-CCcEEEEEe-CCeEEEEeCC-Cce---EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 304 MTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 304 ~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~-Ge~---l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
..|.++-.+. ++|.|++++ +++|+|||.+ -+| +++.+||.+-+. =.-+-+.|....|+|+++
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a---~l~~~v~~eeg~I~s~Gd--------- 366 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA---YLPAHVKEEEGSIFSVGD--------- 366 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc---ccccccccccceEEEccC---------
Confidence 6777777666 888888888 9999999985 666 999999977432 123556778888888876
Q ss_pred CCCCeEEEEeCCCCeEEEEEcc
Q 012410 378 GSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 378 s~DgtIklWdi~tG~cl~tl~g 399 (464)
|...|||.+..|+.+.++.-
T Consensus 367 --DcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 367 --DCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred --eeEEEEEecccCceeeccCC
Confidence 99999999999999999854
No 269
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.74 E-value=2.2e-08 Score=69.81 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=37.3
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
|+|+++|++|... |++|+|+|++.+|||+|. |++|+|||
T Consensus 1 g~~~~~~~~h~~~-----i~~i~~~~~~~~~~s~~~-----------D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS-----INSIAWSPDGNFLASGSS-----------DGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS-----EEEEEEETTSSEEEEEET-----------TSEEEEEE
T ss_pred CeEEEEEcCCCCc-----EEEEEEecccccceeeCC-----------CCEEEEEC
Confidence 6899999999998 999999999999999997 99999997
No 270
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=3e-06 Score=86.18 Aligned_cols=224 Identities=15% Similarity=0.163 Sum_probs=141.4
Q ss_pred EEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecc-ccCceEEEEeCCCCcEEEEe-----
Q 012410 132 IRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES-LKWPGFVEFDDVNGKVLTYS----- 204 (464)
Q Consensus 132 i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~-~~~~~~VaFs~pdGk~LaSg----- 204 (464)
-..++.+|... .++. ..-+|.-..++|.++|+....+.-=...+ .+ =..|| |||++|.+.
T Consensus 7 gH~~a~~p~~~~avaf---------aRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG---Hg~fs-~dG~~LytTEnd~~ 73 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAF---------ARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG---HGVFS-PDGRLLYTTENDYE 73 (305)
T ss_pred ccceeeCCCCCeEEEE---------EeCCCcEEEEEEcCCCceeeEEcCCCCCEEec---CEEEc-CCCCEEEEeccccC
Confidence 34567788443 3333 12455788889999999764221111111 22 37797 899998764
Q ss_pred cCCCcEEEEeCC-CCeEEEEecCCCE--eEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC-CeEEEEe
Q 012410 205 AQDSIYKVFDLK-NYTMLYSISDKHV--QEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQ 280 (464)
Q Consensus 205 s~D~tiKlWdl~-tg~~l~tl~~~~V--~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~-~~lla~s 280 (464)
+..+.|-|||+. +++-+-.++...| .+|.+.|+ |+-|..-++-.++ .|+.+ .+|=...
T Consensus 74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD------------G~tLvVANGGI~T------hpd~GR~kLNl~t 135 (305)
T PF07433_consen 74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD------------GETLVVANGGIET------HPDSGRAKLNLDT 135 (305)
T ss_pred CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC------------CCEEEEEcCCCcc------CcccCceecChhh
Confidence 346789999998 7777777765544 45555544 5444444421111 13222 2343456
Q ss_pred CCCeEEEEECCCCcEEEE--c--ccCCCceEEEEEcCCCcEEEEEe-CC-------eEEEEeCCCceEEEeccCCC-C-c
Q 012410 281 ENENLQILDVRNAELMEV--S--RTEFMTPSAFIFLYENQLFLTFR-NR-------TVAVWNFRGELVTSFEDHLL-W-H 346 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~--l--~gh~~~v~sv~FspdgqllaS~s-D~-------TIklWd~~Ge~l~tl~gH~~-~-~ 346 (464)
.+-++-..|..+|++++. | ..|...++=++..+||..+...- .+ -|-+++ .|+.++.+..-.. | -
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~-~g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR-RGGALRLLPAPEEQWRR 214 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc-CCCcceeccCChHHHHh
Confidence 777888899999999986 6 55888999999999998776654 32 234444 2333333332110 0 0
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
..-.+-||+|++||.++|..|- .-+.+-+||..||+++...
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsP----------rGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSP----------RGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECC----------CCCEEEEEECCCCCEeecc
Confidence 0002789999999999987774 4799999999999998865
No 271
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=1.6e-05 Score=75.27 Aligned_cols=204 Identities=16% Similarity=0.105 Sum_probs=129.6
Q ss_pred CCcEEEEeCCCCeEEEEecC----CCEe--EE-----EEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 207 DSIYKVFDLKNYTMLYSISD----KHVQ--EI-----KIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~----~~V~--~V-----afs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
+++|..||+++|+.+-+..- .... .+ .|-.+.++.|..||+.||+.+.++... ..+...... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~--~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVV--DGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEE--ETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeee--cccc
Confidence 67888999999998865431 1111 11 122357889999999999999888742 222111122 3578
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEc-ccCC---CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCC
Q 012410 276 LLVKQENENLQILDVRNAELMEVS-RTEF---MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDC 349 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l-~gh~---~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~ 349 (464)
+++...|+.|..+|..+|+.+-.. .... ..........++..++.+. ++.|...|. +|+.+-....+..... .
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~-~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS-S 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC-c
Confidence 888888889999999999988763 3221 1111222333366666666 999999998 7999888876542210 0
Q ss_pred C------eeEEEECCCCCEEEEEecCCCccccccCCCC-eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccc
Q 012410 350 N------TNNIYITSDQDLIISYCKAEPEDQWMEGSAG-SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 422 (464)
Q Consensus 350 ~------v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg-tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~ 422 (464)
. ...-.+..++.++++.. ++ .+.+ |+.+|+.+.... -.
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~------------~g~~~~~-d~~tg~~~w~~~-~~--------------------- 202 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSG------------DGRVVAV-DLATGEKLWSKP-IS--------------------- 202 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECC------------TSSEEEE-ETTTTEEEEEEC-SS---------------------
T ss_pred ceeeecccccceEEECCEEEEEcC------------CCeEEEE-ECCCCCEEEEec-CC---------------------
Confidence 0 12333334555555433 55 5788 999999765433 11
Q ss_pred ccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 423 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 423 ~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+.+ ...+++..|+.++.|+.|..||.
T Consensus 203 --------------~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 203 --------------GIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp ---------------ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred --------------CccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 2222 25688999999999999999983
No 272
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=3.7e-07 Score=97.81 Aligned_cols=226 Identities=10% Similarity=0.160 Sum_probs=161.4
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC------CC----------------------cc
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP------DS----------------------GF 177 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~------~~----------------------~~ 177 (464)
+.+.+.-..+..+|||+++.+++.|.+ .|+++|+..=-+ +. +.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP---------~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKP---------QIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCC---------ceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCcee
Confidence 456777899999999999999887765 455555532111 00 11
Q ss_pred cceeec----cccCce---EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCce
Q 012410 178 ALFESE----SLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHV 240 (464)
Q Consensus 178 ~l~~~~----~~~~~~---~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~ 240 (464)
..|... ...-|. .++++.|+-.++.-|+.+..||+ +|+.|..|..+. ...++.|.+++ ..++
T Consensus 119 efHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRl-NLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 119 EFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRL-NLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred eehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEE-EccccccccccccccccceeeeecCccceEEecccCc
Confidence 111100 011111 35666677777777777777776 999999998877 47899999986 3689
Q ss_pred eEEEEEcCCCcEEEEEeeCCc-----------ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-cCCCceEE
Q 012410 241 PLKILSIEDGTVLKVFYHLLH-----------RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSA 308 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~-----------~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~s 308 (464)
.|..||-.+-....+|.-..+ .|.++.|.- ++=.+++|..+|.+-|+|+++.+.+-+-. +....+..
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKK 276 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceee
Confidence 999999999888888863211 367888855 34567778899999999999999876543 23357778
Q ss_pred EEEcCC--CcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 309 FIFLYE--NQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 309 v~Fspd--gqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+.|.+. +..++|..-+++||||- +|+....++--.. ++.+++-|++-++..+-.
T Consensus 277 l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~------lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD------LNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ecccccCCCceEEecchHHhhhcccccCCceeeccccCC------cCceeeecCCceEEEecC
Confidence 889765 45566666789999998 7999888875433 789999999999998854
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.63 E-value=2.1e-05 Score=78.75 Aligned_cols=196 Identities=13% Similarity=0.097 Sum_probs=107.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
-|+|| ||+..||++..-++|+|+|+. |..|+.++... .+..+ + ..-+-.+.|.
T Consensus 48 kl~WS-pD~tlLa~a~S~G~i~vfdl~-g~~lf~I~p~~----~~~~d---------~------------~~Aiagl~Fl 100 (282)
T PF15492_consen 48 KLAWS-PDCTLLAYAESTGTIRVFDLM-GSELFVIPPAM----SFPGD---------L------------SDAIAGLIFL 100 (282)
T ss_pred EEEEC-CCCcEEEEEcCCCeEEEEecc-cceeEEcCccc----ccCCc---------c------------ccceeeeEee
Confidence 69998 999999999999999999984 57777765210 01100 0 0122222332
Q ss_pred ccC-----CCeEEEEeCCCeEEEEECCCC-----cEEEE---cccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCCCc
Q 012410 270 EQF-----NEKLLVKQENENLQILDVRNA-----ELMEV---SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRGE 334 (464)
Q Consensus 270 ~~~-----~~~lla~s~D~tIkIWDv~tg-----~~l~~---l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~Ge 334 (464)
+.- ...|++=..+|.++=+-|..| +..++ ...+...|.++++.|.-++|+.|+ ...-..+...
T Consensus 101 ~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~-- 178 (282)
T PF15492_consen 101 EYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKAS-- 178 (282)
T ss_pred ccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccccc--
Confidence 221 124555566666665554322 22222 234567899999999999888776 3321122211
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
=.|=+.|. -+.=+|.-+.+.++-+ +...+ -.+-.+|.+.+.+..- .++.
T Consensus 179 ----~~GLtaWR------iL~~~Pyyk~v~~~~~-----~~~~~-~~~~~~~~~~~~~~fs-~~~~-------------- 227 (282)
T PF15492_consen 179 ----SCGLTAWR------ILSDSPYYKQVTSSED-----DITAS-SKRRGLLRIPSFKFFS-RQGQ-------------- 227 (282)
T ss_pred ----ccCceEEE------EcCCCCcEEEccccCc-----ccccc-ccccceeeccceeeee-cccc--------------
Confidence 01111121 1112333333322210 00000 1233455554433211 1111
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
....|..+..||||+.||+-..+|.|-||+.
T Consensus 228 -------------------~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 228 -------------------EQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred -------------------CCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 1128999999999999999999999999974
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.61 E-value=1.9e-07 Score=109.63 Aligned_cols=202 Identities=17% Similarity=0.211 Sum_probs=151.2
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEe--------CCCceeEEEEEcCCCcEEEEEe--eCCcceee
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIR--------SSSHVPLKILSIEDGTVLKVFY--HLLHRNKK 265 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs--------~s~d~tIklWdi~tG~~l~tl~--~~~~~~~~ 265 (464)
+.|+..+.+.-+.+.--|..+-+..+..-+-++|..+.=+ .+.|+.|++|..-.|+.+.++. +. .+|..
T Consensus 2178 ~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr 2256 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTR 2256 (2439)
T ss_pred cccccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhh
Confidence 4556666677777776676654433222112233333323 3689999999999999999888 33 78889
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe----CCeEEEEeC--CC--ceEE
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF--RG--ELVT 337 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s----D~TIklWd~--~G--e~l~ 337 (464)
..|+.+ |++..++-.||-|-+|.+. -+..-..+-|......|.|.- .++|+++ ++.+-+||. .+ -|+.
T Consensus 2257 ~~f~~q-Gnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2257 SRFNHQ-GNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhccc-CCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 999996 7888999999999999965 445556677888888999987 6677753 789999995 33 3566
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
..|... +..+++-|..++|+||++ +|-|+|||+...|.+++++.
T Consensus 2333 --~~H~~g-----aT~l~~~P~~qllisggr-----------~G~v~l~D~rqrql~h~~~~------------------ 2376 (2439)
T KOG1064|consen 2333 --TCHDGG-----ATVLAYAPKHQLLISGGR-----------KGEVCLFDIRQRQLRHTFQA------------------ 2376 (2439)
T ss_pred --eecCCC-----ceEEEEcCcceEEEecCC-----------cCcEEEeehHHHHHHHHhhh------------------
Confidence 667666 678999999999999998 99999999988887776643
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+ ...++++|+..|.|++|+.
T Consensus 2377 -------------------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2377 -------------------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred -------------------------hh-hhheeeccCcccceEEEEc
Confidence 12 4578999999999999974
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=3.9e-07 Score=99.76 Aligned_cols=294 Identities=11% Similarity=0.099 Sum_probs=163.9
Q ss_pred cceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCC--CEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNN--DSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g--~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..-..+.-.|.=|++++.-|..-+.=..-+.+-..|--.....|-.+-+||.- ++-|+ +... +..-+|
T Consensus 27 ~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiV----sts~------qkaiiw 96 (1081)
T KOG0309|consen 27 FNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIV----STSN------QKAIIW 96 (1081)
T ss_pred ccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEE----ecCc------chhhhh
Confidence 33344445577777777777433321133333333322222334444444421 22222 1222 445578
Q ss_pred EeccCCCCC-cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDS-GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~-~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
+++.-.-.+ .|-+|.. ..-+..+.|.+.+-.+||+++.|..+-.||+.. -+.|+..|
T Consensus 97 nlA~ss~~aIef~lhgh--sraitd~n~~~q~pdVlatcsvdt~vh~wd~rS--------------------p~~p~ys~ 154 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGH--SRAITDINFNPQHPDVLATCSVDTYVHAWDMRS--------------------PHRPFYST 154 (1081)
T ss_pred hhhcCCccceEEEEecC--ccceeccccCCCCCcceeeccccccceeeeccC--------------------CCcceeee
Confidence 875433222 1333332 132335778766777999999999999999863 34555555
Q ss_pred EcC-CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEEEEcC--CCcEEEEE
Q 012410 246 SIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLY--ENQLFLTF 321 (464)
Q Consensus 246 di~-tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~Fsp--dgqllaS~ 321 (464)
+.- ++. ..|.++.- +..+++++..+.|.+||.+-|- .+..+++|...|.+++|.. .+. +.+.
T Consensus 155 ~~w~s~a------------sqVkwnyk-~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~-~~s~ 220 (1081)
T KOG0309|consen 155 SSWRSAA------------SQVKWNYK-DPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSE-IMSS 220 (1081)
T ss_pred ecccccC------------ceeeeccc-CcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhh-hccc
Confidence 542 232 33444442 4678899999999999999865 6788999998999999983 444 4455
Q ss_pred e-CCeEEEEeCC---CceEEEeccCCCCcCCCCeeEEEECCCCC--EEEE-EecCCCccccccCCCCeEEEEeCCCC-eE
Q 012410 322 R-NRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQD--LIIS-YCKAEPEDQWMEGSAGSINVSSILTG-KC 393 (464)
Q Consensus 322 s-D~TIklWd~~---Ge~l~tl~gH~~~~~~~~v~svafSpDg~--~LaS-gs~~~~~~~~~~s~DgtIklWdi~tG-~c 393 (464)
+ |+|||.||.+ -|--++..-.. .||--.|.|=|+ +|.= -+. +.-...-.+..-+.||+.++ +-
T Consensus 221 ~~d~tvkfw~y~kSt~e~~~~vtt~~------piw~~r~~Pfg~g~~~mp~~G~---n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTTESKRTVTTNF------PIWRGRYLPFGEGYCIMPMVGG---NMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred CCCCceeeecccccccccceeccccC------cceeccccccCceeEeccccCC---eeeeeccccchhhhhccccCCcc
Confidence 5 9999999962 22222222111 144444555332 2110 000 00000112556678998887 67
Q ss_pred EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC--CEEEEeeCCCcEEecc
Q 012410 394 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER--NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 394 l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg--~~LaSgs~DgtVrlWd 463 (464)
+++|.||++-|.+. +|....+ ..|+-|. =.|+|=|.|.++|||-
T Consensus 292 Vh~F~GH~D~V~eF-------------------lWR~r~e-------~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEF-------------------LWRKRKE-------CDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred eeeecCcchHHHHH-------------------hhhhccc-------ccCCCCccceeEEEeecCCceEeee
Confidence 99999999732211 1222211 1122222 2589999999999994
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.56 E-value=5.1e-06 Score=84.90 Aligned_cols=305 Identities=14% Similarity=0.188 Sum_probs=171.4
Q ss_pred cceeehhccCCeEEeeecccccE----eeEeecCCC------------ceEEEEEEeeCCCE-EEEEEeecCCCCcccce
Q 012410 98 RDIVFALAHSGVCAAFSRETNRR----ICFLNVSPD------------EVIRSLFYNKNNDS-LITVSVYASDNFSSLKC 160 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~----l~~ln~~~~------------~~i~Sv~fs~~g~~-l~svSa~~sddfs~L~~ 160 (464)
|+.||+++..|-+-+|.+.+-.. ..+.-.+|+ +.|..+.+-+++.. ....| ..|
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls---tNd------ 107 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS---TND------ 107 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe---cCC------
Confidence 99999999999999997554332 111112222 23445555554432 22222 445
Q ss_pred eeEEEEEeccCCCCC------------c-----ccc---------------eeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 161 RSTKIEYIRRGKPDS------------G-----FAL---------------FESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~------------~-----~~l---------------~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
+|+++|-|.....-. + .+. +...|.-|++++.++ .|++++.| +.|-
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~lS-ADdL 185 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFLS-ADDL 185 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEee-ccce
Confidence 799999884322211 0 011 111134456677886 57777775 4566
Q ss_pred cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEE
Q 012410 209 IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 288 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIW 288 (464)
-|-||+++- .+..-.=|.+.|.. ++.++--+.+-.|+|.....++=++..|+|||-
T Consensus 186 RINLWnlei-------~d~sFnIVDIKP~n-----------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 186 RINLWNLEI-------IDQSFNIVDIKPAN-----------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eeeeccccc-------cCCceeEEEccccC-----------------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 777887651 11111111122210 001111224555777544445557889999999
Q ss_pred ECCCCc-EEE---Ecc---c---------CCCceEEEEEcCCCcEEEEEeCCeEEEEeC--CCceEEEeccCCC------
Q 012410 289 DVRNAE-LME---VSR---T---------EFMTPSAFIFLYENQLFLTFRNRTVAVWNF--RGELVTSFEDHLL------ 344 (464)
Q Consensus 289 Dv~tg~-~l~---~l~---g---------h~~~v~sv~FspdgqllaS~sD~TIklWd~--~Ge~l~tl~gH~~------ 344 (464)
|++..- |.. .+. . --..|+.|-||+.|++++|=.=-||||||+ +.+.+.|..-|..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 999643 221 111 0 113467788999999999876679999998 4778888877753
Q ss_pred --CcCCC--CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccCCCC--CCcc----cccCCC
Q 012410 345 --WHPDC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINATNCS--PKVD----DELGSS 413 (464)
Q Consensus 345 --~~~~~--~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh~~~--~~~~----~~~~~~ 413 (464)
+-.|| .-..++||-|+.++++||. ..-.++.++..|. --.++.+.... |... ..++.|
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy-----------~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g 390 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSY-----------NNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSG 390 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccc-----------cceEEEecCCCCcceeecccccccCCcccccccceeeecCC
Confidence 11222 1245889999999999998 7889999976664 23444443321 1111 000011
Q ss_pred CCCcccccccccccccccccccc---CEEEEEEcCCCCEEEEeeCCCc
Q 012410 414 STGKSKKLNKSSYIRSTVGEALE---DITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~---~V~slafspDg~~LaSgs~Dgt 458 (464)
.+ ..-++ -..+|+ .+.-.+|+|.-+.||.+.....
T Consensus 391 ~r-------~~~~~---~vd~ldf~kkilh~aWhp~en~ia~aatnnl 428 (433)
T KOG1354|consen 391 KR-------KRDEI---SVDALDFRKKILHTAWHPKENSIAVAATNNL 428 (433)
T ss_pred Cc-------ccccc---ccchhhhhhHHHhhccCCccceeeeeecCce
Confidence 10 00000 112222 4556788999999999877654
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3.2e-07 Score=97.81 Aligned_cols=165 Identities=12% Similarity=0.147 Sum_probs=119.3
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
|..-.+|+|.|+|||||.++. ..|. +.|..|.-|.+.|...+.++-|.++ .-
T Consensus 746 NENSFiSASkDKTVKLWSik~-------------------EgD~------~~tsaCQfTY~aHkk~i~~igfL~~---lr 797 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKP-------------------EGDE------IGTSACQFTYQAHKKPIHDIGFLAD---LR 797 (1034)
T ss_pred cccceeeccCCceEEEEEecc-------------------ccCc------cccceeeeEhhhccCcccceeeeec---cc
Confidence 555677889999999998752 1111 3356677787766678888888873 22
Q ss_pred EEEeCCCeEEEEECCCCcEEEEcc---cCCCceEEEEE--cCCCcEEEEE-e-CCeEEEEeC-CCceEEEeccCCCCcCC
Q 012410 277 LVKQENENLQILDVRNAELMEVSR---TEFMTPSAFIF--LYENQLFLTF-R-NRTVAVWNF-RGELVTSFEDHLLWHPD 348 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~~l~---gh~~~v~sv~F--spdgqllaS~-s-D~TIklWd~-~Ge~l~tl~gH~~~~~~ 348 (464)
-+.|.|+-|.+||.--|.++.... .| ..+..+-- +-|..++..+ + ..|||+.|. .++.+..++--...-|+
T Consensus 798 ~i~ScD~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 798 SIASCDGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred eeeeccCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 345779999999999998775321 12 12222222 3356666666 4 899999999 59988888766555566
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
..++.++.-|.|+.||.+=. .|+|-+-|..+|+.+..++.-.
T Consensus 877 a~~R~iaVa~~GN~lAa~LS-----------nGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALS-----------NGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred hheeEEEeccCcchhhHHhc-----------CCcEEEEecCCCceeccCCccc
Confidence 66899999999999998743 8999999999999888776544
No 278
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=0.00011 Score=75.41 Aligned_cols=228 Identities=10% Similarity=0.139 Sum_probs=138.9
Q ss_pred eeEEEEEe--ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCC
Q 012410 161 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSS 238 (464)
Q Consensus 161 ~ti~l~~i--~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~ 238 (464)
+.|..|++ .+|++....... ..+-|..++|+ ||++.|-++-.++. ...|-+.+|-+ .
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~---~~~nptyl~~~-~~~~~LY~v~~~~~----------------~ggvaay~iD~-~ 74 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVA---ELGNPTYLAVN-PDQRHLYVVNEPGE----------------EGGVAAYRIDP-D 74 (346)
T ss_pred CceEEEEEeCcccccchhhhcc---ccCCCceEEEC-CCCCEEEEEEecCC----------------cCcEEEEEEcC-C
Confidence 67888888 466654322222 34567799997 89999988765532 12233333322 2
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCC-CcEEEE--cccCCCc---------
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEV--SRTEFMT--------- 305 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g~~l~~--l~gh~~~--------- 305 (464)
|+.+.+.+-.+ +.+ +.-.-|++.++ +..++++. .-+.|.+.-++. |.+... ..-|...
T Consensus 75 ~G~Lt~ln~~~------~~g--~~p~yvsvd~~-g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~ 145 (346)
T COG2706 75 DGRLTFLNRQT------LPG--SPPCYVSVDED-GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESP 145 (346)
T ss_pred CCeEEEeeccc------cCC--CCCeEEEECCC-CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCC
Confidence 34444433221 111 12145666663 45566655 568888887765 544322 1123222
Q ss_pred -eEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 306 -PSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 306 -v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
+-..-|.|||++|++.. --.|-++++ +|.+...=+-+. -+.+-=+-|+|+|+|++.-.-++ -++
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~E----------L~s 213 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNE----------LNS 213 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEec----------cCC
Confidence 66788999999999987 335789999 688754222221 12333467999999999887776 389
Q ss_pred eEEEEeCCCC-eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 382 SINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 382 tIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
||-+|..... .-+..|+-+...|.... |.. +.-+|..+|||+.||..++
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~----g~~---------------------~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFT----GTN---------------------WAAAIHISPDGRFLYASNR 263 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccC----CCC---------------------ceeEEEECCCCCEEEEecC
Confidence 9999998773 55666766665443211 111 5667889999999998764
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.49 E-value=3.5e-05 Score=82.04 Aligned_cols=254 Identities=12% Similarity=0.085 Sum_probs=156.9
Q ss_pred ehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee
Q 012410 102 FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (464)
Q Consensus 102 ~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~ 181 (464)
+.+..+..+.++.........+.+.+.+..+..+.+||.|..|++ .. - +.|.+|+-..+.. +..
T Consensus 5 F~~~~s~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~----~~-~------~~V~~~~g~~~~~-----l~~ 68 (561)
T COG5354 5 FPLDYSAVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFS----EH-A------AGVECWGGPSKAK-----LVR 68 (561)
T ss_pred eeeeccceEEEeecCccccccccccccCcchhheeecCcchheeh----hh-c------cceEEccccchhh-----eee
Confidence 345666677777656666667775668889999999999999988 22 2 5777887544432 222
Q ss_pred eccccCce--EEEEeCCCCcEEEEecCCC---------------cEEEEeCCCCeEEEEec--CCC--Ee-EEEEeCCC-
Q 012410 182 SESLKWPG--FVEFDDVNGKVLTYSAQDS---------------IYKVFDLKNYTMLYSIS--DKH--VQ-EIKIRSSS- 238 (464)
Q Consensus 182 ~~~~~~~~--~VaFs~pdGk~LaSgs~D~---------------tiKlWdl~tg~~l~tl~--~~~--V~-~Vafs~s~- 238 (464)
+.||. .+.|| |+|++|.+=+.-. .+.|||.++|..+.++. ... .| -+.||.++
T Consensus 69 ---~~~~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~ 144 (561)
T COG5354 69 ---FRHPDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK 144 (561)
T ss_pred ---eecCCceecccC-cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch
Confidence 13333 79998 9999999876533 48999999999998876 222 55 67777642
Q ss_pred ------ceeEEEEEcCCCcEEE----EEeeCCcceeeEEEEccCCCe-EEE-----EeCCCeEEEEECCCCcEEEEcccC
Q 012410 239 ------HVPLKILSIEDGTVLK----VFYHLLHRNKKVDFIEQFNEK-LLV-----KQENENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 239 ------d~tIklWdi~tG~~l~----tl~~~~~~~~~V~F~~~~~~~-lla-----~s~D~tIkIWDv~tg~~l~~l~gh 302 (464)
-..++|.++ |+..-. ++. ...+..-.|+|-.+.. |+. +..+.+++||.+-.+..+.+-.
T Consensus 145 y~ARvv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-- 219 (561)
T COG5354 145 YVARVVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-- 219 (561)
T ss_pred hhhhhccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--
Confidence 235777776 443221 111 0223444455542222 222 3578999999988666544311
Q ss_pred CCceE--EEEEcCCCcEEEEEe------------CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 303 FMTPS--AFIFLYENQLFLTFR------------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 303 ~~~v~--sv~FspdgqllaS~s------------D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
...+. .+-+.+.|..|+.-- ..+.-|.++++.-+....+-.+. |-+.+|+|+++.++..+.
T Consensus 220 lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~p-----Vhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 220 LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDP-----VHDFTWEPLSSRFAVISG 294 (561)
T ss_pred eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccc-----ceeeeecccCCceeEEec
Confidence 11122 344667777665311 23566777765444433343444 788999999987765541
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
-.+.++.+.|+ .|+...
T Consensus 295 ---------~~pa~~s~~~l-r~Nl~~ 311 (561)
T COG5354 295 ---------YMPASVSVFDL-RGNLRF 311 (561)
T ss_pred ---------ccccceeeccc-ccceEE
Confidence 12788999997 455433
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.48 E-value=1.4e-06 Score=90.02 Aligned_cols=147 Identities=14% Similarity=0.222 Sum_probs=100.2
Q ss_pred EEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEE-EEe---cCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 190 FVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTML-YSI---SDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 190 ~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l-~tl---~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
+|+++ +.+. ++-+-..+...|+||....--- ..+ ....=--|+-..++.+.+++|++..|.+.-++- |...+.
T Consensus 78 Av~~~-~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG-hvSml~ 155 (390)
T KOG3914|consen 78 AVATS-SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILG-HVSMLL 155 (390)
T ss_pred EEEeC-CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhh-hhhhhh
Confidence 67776 5665 4455666667888886432211 011 111111122234677889999998887776664 447779
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
.|+++|+ ++.|+++-.|+.||+-..-.---++ ..-||...|..++. .++++|+|+| |+|+++||. +|+++.+|.
T Consensus 156 dVavS~D-~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl-~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 156 DVAVSPD-DQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL-TDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeecCC-CCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee-ccCceeeecCCCCcEEEEecccCCcccccc
Confidence 9999995 5777888899999985433322333 34689999998854 5666788988 999999999 699998876
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.46 E-value=5.5e-06 Score=83.88 Aligned_cols=282 Identities=11% Similarity=0.082 Sum_probs=157.5
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC----CCcccceeecc--c------cCceEEEEe
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP----DSGFALFESES--L------KWPGFVEFD 194 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~----~~~~~l~~~~~--~------~~~~~VaFs 194 (464)
...+.|.+|-|-.-|.+|++ |..+ ||.+-..+-..-.| .-.|+.|+.+. + .-+..+++-
T Consensus 24 tead~ItaVefd~tg~Ylat----GDkg-----GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~ 94 (460)
T COG5170 24 TEADKITAVEFDETGLYLAT----GDKG-----GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF 94 (460)
T ss_pred cccceeeEEEeccccceEee----cCCC-----ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee
Confidence 45678999999999999999 3222 23332222111111 11244444321 1 112235544
Q ss_pred CCCCc--EEEEecCCCcEEEEeCCCCeEEEEecCCCE-eEEEEe-------C--------C-CceeEEEEEcCCCcEEEE
Q 012410 195 DVNGK--VLTYSAQDSIYKVFDLKNYTMLYSISDKHV-QEIKIR-------S--------S-SHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 195 ~pdGk--~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V-~~Vafs-------~--------s-~d~tIklWdi~tG~~l~t 255 (464)
++.|+ .|. +..|+|||||.+..-.+ +....++. .++.++ + + .|.-|.. -.|..-
T Consensus 95 ~~t~r~hFLl-stNdktiKlWKiyeknl-k~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-----~p~rvy 167 (460)
T COG5170 95 DDTGRNHFLL-STNDKTIKLWKIYEKNL-KVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-----KPCRVY 167 (460)
T ss_pred cCCCcceEEE-ecCCceeeeeeeecccc-hhhhccccccccccccCCCcCCHHHhhcccccccceEEEe-----ccceec
Confidence 44443 455 46899999999865432 11111111 111111 0 1 2222211 011111
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cE--EEEcccCCC-----ceEEEEEcCCCcEEE-EEe-CCe
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-EL--MEVSRTEFM-----TPSAFIFLYENQLFL-TFR-NRT 325 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~--l~~l~gh~~-----~v~sv~Fspdgqlla-S~s-D~T 325 (464)
-+-|..++.++.|..+ ...+.+++|-.|.||++.-- .| +-..+.|.+ -+.+.-|+|..-.+. -++ -|+
T Consensus 168 aNaH~yhiNSiS~NsD--~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 168 ANAHPYHINSISFNSD--KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred cccceeEeeeeeecCc--hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 1223356789999774 55666778999999997652 23 334566654 466778998765443 334 999
Q ss_pred EEEEeCC--CceE---EEeccCCCCcCC-------CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-Ce
Q 012410 326 VAVWNFR--GELV---TSFEDHLLWHPD-------CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GK 392 (464)
Q Consensus 326 IklWd~~--Ge~l---~tl~gH~~~~~~-------~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~ 392 (464)
|||-|++ .-|. ++|+.....+.- ..|..+-|||+|++|+|-+ --||+|||+.. .+
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd------------yltvkiwDvnm~k~ 313 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD------------YLTVKIWDVNMAKN 313 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec------------cceEEEEecccccC
Confidence 9999984 3332 233322211100 0266789999999999875 58999999865 57
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccc-cccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS-TVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
|++|+.-|... +.++.. -...+.-.=.-+.||-|.+.+.|||-...
T Consensus 314 pikTi~~h~~l--------------------~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NN 360 (460)
T COG5170 314 PIKTIPMHCDL--------------------MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNN 360 (460)
T ss_pred CceeechHHHH--------------------HHHHHhhhhccceeeeEEEEecCCcccccccccccc
Confidence 99999888741 001100 00112224456889999999999986544
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=4.8e-07 Score=96.51 Aligned_cols=169 Identities=11% Similarity=0.203 Sum_probs=120.0
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-------CcEEEEcccCCCceEEEEEcCCCcEEEEEeCCe
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-------AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRT 325 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-------g~~l~~l~gh~~~v~sv~FspdgqllaS~sD~T 325 (464)
|..|.+|...++.++-+. ....++++|.|+|+|+|.++. ..|.-+.+.|...+.++-|..|.+.++|. |+-
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-cCc
Confidence 445666666777777554 234667789999999998865 34888999999999999999999988654 899
Q ss_pred EEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCC
Q 012410 326 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 404 (464)
Q Consensus 326 IklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~ 404 (464)
|.|||- .|+++...++..---...+|..+ =+-|..+++.||. ...|||+.|...++-...++-.+. |
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl-~nv~~~iliAgcs----------aeSTVKl~DaRsce~~~E~kVcna-~ 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL-ENVDRHILIAGCS----------AESTVKLFDARSCEWTCELKVCNA-P 873 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec-ccCcchheeeecc----------chhhheeeecccccceeeEEeccC-C
Confidence 999997 79988755432211000112211 1226777777765 378999999988887777765532 0
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+.+ .-+.+++.-|.|+.||.|-..|+|-+-|
T Consensus 874 -~Pn---------------------------a~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 874 -GPN---------------------------ALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred -CCc---------------------------hheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 001 1578899999999999999999887644
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.38 E-value=1.8e-06 Score=94.74 Aligned_cols=273 Identities=14% Similarity=0.152 Sum_probs=172.1
Q ss_pred cccccCCccccccchhhhhhccccceee--------eecCCCCCcccchhhhccccceEEEEeccceeehhccCCeEEee
Q 012410 42 EICSKRDRAFSISNAQERFRNMHLVEEY--------DTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAF 113 (464)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~l~~~s~v~~~~~ag~~l~~l~~~g~~~~~ 113 (464)
.++.+-++-|++...-+-=|+|-|-.-+ |-|.|+-.|.++-|..-... ......|.++-+.-..++.--+|
T Consensus 18 slsl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~-qws~h~a~~~wiVsts~qkaiiw 96 (1081)
T KOG0309|consen 18 SLSLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADV-QWSPHPAKPYWIVSTSNQKAIIW 96 (1081)
T ss_pred eeEEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcce-ecccCCCCceeEEecCcchhhhh
Confidence 3455555555444443334555554433 55667777777766533332 22334455555444444444456
Q ss_pred ec--ccccEeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce-
Q 012410 114 SR--ETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG- 189 (464)
Q Consensus 114 ~~--~~g~~l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~- 189 (464)
+. ...+.|-++--+|...|..+.|+|.. +.|++ .+.| -.+..||++.-.. +.... ...+.+
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlat----csvd------t~vh~wd~rSp~~----p~ys~-~~w~s~a 161 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLAT----CSVD------TYVHAWDMRSPHR----PFYST-SSWRSAA 161 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceee----cccc------ccceeeeccCCCc----ceeee-ecccccC
Confidence 53 35677777777899999999999875 56777 4455 4666788765443 22222 112222
Q ss_pred -EEEEeCCCCcEEEEecCCCcEEEEeCCCC-eEEEEecC--CCEeEEEE---------eCCCceeEEEEEcCCCcEE--E
Q 012410 190 -FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSISD--KHVQEIKI---------RSSSHVPLKILSIEDGTVL--K 254 (464)
Q Consensus 190 -~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~~l~tl~~--~~V~~Vaf---------s~s~d~tIklWdi~tG~~l--~ 254 (464)
.|+++-.|+.+||| +...-|.+||+.-| ..|.++++ ..|.+++| +++.|+|||.||-+.-+.- +
T Consensus 162 sqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred ceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 58888789999985 56778999999865 46677774 35677777 5789999999998743322 2
Q ss_pred EEeeCCcceeeEEEEccCCCeEEEEeCCC-eE---------EEEECCCC-cEEEEcccCCCceEEEEEcC--------CC
Q 012410 255 VFYHLLHRNKKVDFIEQFNEKLLVKQENE-NL---------QILDVRNA-ELMEVSRTEFMTPSAFIFLY--------EN 315 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~~~lla~s~D~-tI---------kIWDv~tg-~~l~~l~gh~~~v~sv~Fsp--------dg 315 (464)
+.. ..-.++.-.|.|...+.++.-+..+ .+ +.|++.++ +.++++.||.+.|-.|-|-- |.
T Consensus 241 ~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~ 319 (1081)
T KOG0309|consen 241 TVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDS 319 (1081)
T ss_pred ecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCc
Confidence 222 1246688888885456666543222 22 35777775 47899999999887665532 22
Q ss_pred c--EEEEEe-CCeEEEEeCC
Q 012410 316 Q--LFLTFR-NRTVAVWNFR 332 (464)
Q Consensus 316 q--llaS~s-D~TIklWd~~ 332 (464)
+ .|+|=| |.++|+|-+.
T Consensus 320 rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 320 RDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred cceeEEEeecCCceEeeecc
Confidence 2 588988 9999999863
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.0003 Score=72.31 Aligned_cols=277 Identities=17% Similarity=0.161 Sum_probs=151.4
Q ss_pred CCeEEeeeccc--ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe--ccCCCCCcccceee
Q 012410 107 SGVCAAFSRET--NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDSGFALFES 182 (464)
Q Consensus 107 ~g~~~~~~~~~--g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i--~~G~~~~~~~l~~~ 182 (464)
++-|..|++.+ |+.-..-......-..=|+++|+++.|-++-..+.++ .|--..| ..|.+-.--.-...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~g-------gvaay~iD~~~G~Lt~ln~~~~~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEG-------GVAAYRIDPDDGRLTFLNRQTLP 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcC-------cEEEEEEcCCCCeEEEeeccccC
Confidence 45566666442 2211111122333355688999998888855222122 2222333 33665211011111
Q ss_pred ccccCceEEEEeCCCCcEEEEecC-CCcEEEEeCCC-CeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCC
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKN-YTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~t-g~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
-..|..|++| ++|++|.++.. -+.|.|.-+++ |.+... |+.++ .+|.--. -+...
T Consensus 88 --g~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~-----v~~~~--------------h~g~~p~-~rQ~~ 144 (346)
T COG2706 88 --GSPPCYVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPV-----VQVVK--------------HTGSGPH-ERQES 144 (346)
T ss_pred --CCCCeEEEEC-CCCCEEEEEEccCceEEEEEcccCCccccc-----eeeee--------------cCCCCCC-ccccC
Confidence 1334689997 89999998875 34566655532 333211 11111 0111000 01111
Q ss_pred cceeeEEEEccCCCeEEEE--eCCCeEEEEECCCCcEEEEcc---cCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC-
Q 012410 261 HRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR- 332 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~--s~D~tIkIWDv~tg~~l~~l~---gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~- 332 (464)
.++..+.|.|+ +..+++. +.| .|.++++..|.+-..-. .....++-++|.|+|+..-.-. ++||-+|..+
T Consensus 145 ~h~H~a~~tP~-~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 145 PHVHSANFTPD-GRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred CccceeeeCCC-CCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 33567778884 4555554 366 46699999888654322 2336789999999999887776 9999999984
Q ss_pred --Cc--eEEE---ecc---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCC
Q 012410 333 --GE--LVTS---FED---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATN 401 (464)
Q Consensus 333 --Ge--~l~t---l~g---H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~ 401 (464)
|+ ++++ |.. -..| .-.|.+||||++|...-. + ..+|-++.+.. |.-|..+.-+.
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~-----~aaIhis~dGrFLYasNR---------g-~dsI~~f~V~~~~g~L~~~~~~~ 287 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNW-----AAAIHISPDGRFLYASNR---------G-HDSIAVFSVDPDGGKLELVGITP 287 (346)
T ss_pred CCceEEEeeeeccCccccCCCCc-----eeEEEECCCCCEEEEecC---------C-CCeEEEEEEcCCCCEEEEEEEec
Confidence 33 2222 211 1124 568999999999987543 2 33666665532 22244332222
Q ss_pred CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC-cEEe
Q 012410 402 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG-LVHV 461 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg-tVrl 461 (464)
. +.. .=....|+|+|+.|+.+++|. +|.+
T Consensus 288 t---eg~----------------------------~PR~F~i~~~g~~Liaa~q~sd~i~v 317 (346)
T COG2706 288 T---EGQ----------------------------FPRDFNINPSGRFLIAANQKSDNITV 317 (346)
T ss_pred c---CCc----------------------------CCccceeCCCCCEEEEEccCCCcEEE
Confidence 1 111 224578899999999888654 3444
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.34 E-value=2.8e-06 Score=100.09 Aligned_cols=156 Identities=12% Similarity=0.169 Sum_probs=123.2
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCc
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 334 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge 334 (464)
.|+.+.|+...-.|. ....++|+.||.|++|....++-+-+++. -...|...+|+.+|..+.-+- ||.+-+|...-+
T Consensus 2205 k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 355677777776674 56789999999999999988987766542 237889999999999999888 999999999888
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC--CC-eEEEEEccCCCCCCcccccC
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TG-KCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG-~cl~tl~gh~~~~~~~~~~~ 411 (464)
...+.+.|.-. .....|-. .++|+++. .+.++.+.+||.. .+ -|+. .+|..
T Consensus 2284 ~~~s~qchnk~-----~~Df~Fi~--s~~~tag~--------s~d~~n~~lwDtl~~~~~s~v~--~~H~~--------- 2337 (2439)
T KOG1064|consen 2284 PYTSWQCHNKA-----LSDFRFIG--SLLATAGR--------SSDNRNVCLWDTLLPPMNSLVH--TCHDG--------- 2337 (2439)
T ss_pred ceeccccCCcc-----ccceeeee--hhhhcccc--------CCCCCcccchhcccCcccceee--eecCC---------
Confidence 88888888776 44555643 77787765 2457899999953 12 2333 45554
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.++.++|-|.-|.|.||+.+|.|.|||.
T Consensus 2338 -------------------------gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2338 -------------------------GATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred -------------------------CceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 8899999999999999999999999983
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.29 E-value=0.00095 Score=64.62 Aligned_cols=219 Identities=14% Similarity=0.137 Sum_probs=127.9
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEe-eCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYN-KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs-~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
|.+.++=...+.+..|+..+++.. .+.. +. ..++++. ++|..+++ . .. .+.+.|..+|+...-
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~-~~~~-~~--~~G~~~~~~~g~l~v~-~---~~--------~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVE-VIDL-PG--PNGMAFDRPDGRLYVA-D---SG--------GIAVVDPDTGKVTVL 75 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEE-EEES-SS--EEEEEEECTTSEEEEE-E---TT--------CEEEEETTTTEEEEE
T ss_pred CEEEEEEcCCCEEEEEECCCCeEE-EEec-CC--CceEEEEccCCEEEEE-E---cC--------ceEEEecCCCcEEEE
Confidence 666666666778888886655543 3323 22 6788888 67655555 2 22 334458777765321
Q ss_pred ccceeec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEE
Q 012410 177 FALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 177 ~~l~~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~t 255 (464)
....... ....|+.++|+ |+|.+.++.+......-.+ .+.|-.++.. |++...
T Consensus 76 ~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~------------------------~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGID------------------------PGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGG------------------------SEEEEEEETT-SEEEEE
T ss_pred eeccCCCcccCCCceEEEc-CCCCEEEEecCCCcccccc------------------------ccceEEECCC-CeEEEE
Confidence 1111111 33456689997 8998777655432210000 0222223333 343333
Q ss_pred EeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECC--CCcEE--E---EcccCCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--NAELM--E---VSRTEFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~--tg~~l--~---~l~gh~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
+.+ ......++|+|+ +..|.+. +..+.|.-+|+. +++.. + .+.+....+-.+++..+|++.++.. .+.|
T Consensus 130 ~~~-~~~pNGi~~s~d-g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 130 ADG-LGFPNGIAFSPD-GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp EEE-ESSEEEEEEETT-SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEE
T ss_pred ecC-cccccceEECCc-chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEE
Confidence 332 244578888884 4455554 577888888875 33221 2 2233334588999999999999877 8999
Q ss_pred EEEeCCCceEEEeccCCCCcCCCCeeEEEE-CCCCCEEEE
Q 012410 327 AVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIIS 365 (464)
Q Consensus 327 klWd~~Ge~l~tl~gH~~~~~~~~v~svaf-SpDg~~LaS 365 (464)
.+.|.+|+++..++--... +.+++| -||.+.|.-
T Consensus 208 ~~~~p~G~~~~~i~~p~~~-----~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 208 VVFDPDGKLLREIELPVPR-----PTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEETTSCEEEEEE-SSSS-----EEEEEEESTTSSEEEE
T ss_pred EEECCCccEEEEEcCCCCC-----EEEEEEECCCCCEEEE
Confidence 9999999999888755333 679999 578676654
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.28 E-value=0.00021 Score=75.90 Aligned_cols=245 Identities=13% Similarity=0.133 Sum_probs=157.6
Q ss_pred cceeehhccCCeEEeeec-ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC--
Q 012410 98 RDIVFALAHSGVCAAFSR-ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-- 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~-~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~-- 174 (464)
+.+-++-+++|.=.+|++ +.|+-|+--..-++. ..-..|.||+.++- +.. ..|.+.|-.+-.+-
T Consensus 236 ~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdY--Y~R~~nsDGkrIvF----q~~-------GdIylydP~td~lekl 302 (668)
T COG4946 236 ERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDY--YPRNANSDGKRIVF----QNA-------GDIYLYDPETDSLEKL 302 (668)
T ss_pred ceEEEEecccCccceEEeccCCchhhhcCCchhc--cccccCCCCcEEEE----ecC-------CcEEEeCCCcCcceee
Confidence 456677888888888864 356655432121333 33345677876644 222 34555554333331
Q ss_pred -Ccccceee-c---cccCceEEE-EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC--------CCce
Q 012410 175 -SGFALFES-E---SLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS--------SSHV 240 (464)
Q Consensus 175 -~~~~l~~~-~---~~~~~~~Va-Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~--------s~d~ 240 (464)
-++++... + .....-+++ |+..+|.++|.-|.- ..-|.+...|--+..-+...|+-..|.. ..|+
T Consensus 303 dI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-kaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg 381 (668)
T COG4946 303 DIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-KAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG 381 (668)
T ss_pred ecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-cEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCC
Confidence 12333311 1 011111455 777899998877654 3445555445445444455677666643 2444
Q ss_pred -eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 241 -PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 241 -tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
.|-|+|.++|+. +.++..+..+.+|.-++ ++.+++++-....|-+.|+.||+....-+.+..-+..++++|+++.||
T Consensus 382 D~l~iyd~~~~e~-kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iA 459 (668)
T COG4946 382 DKLGIYDKDGGEV-KRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIA 459 (668)
T ss_pred ceEEEEecCCceE-EEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEE
Confidence 789999998765 45555568999999887 455566677778888899999998888788888999999999999999
Q ss_pred EEe-C----CeEEEEeCC-CceE--EEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 320 TFR-N----RTVAVWNFR-GELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 320 S~s-D----~TIklWd~~-Ge~l--~tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
-+- + +.|||.|.. |+.. +|=.+|. .+=||-|||++|-==
T Consensus 460 YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D--------fsPaFD~d~ryLYfL 506 (668)
T COG4946 460 YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD--------FSPAFDPDGRYLYFL 506 (668)
T ss_pred EecCcceeeeeEEEEecCCCeEEEecCCcccc--------cCcccCCCCcEEEEE
Confidence 865 4 489999995 5653 3433442 467899999988543
No 288
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.24 E-value=4.6e-05 Score=76.69 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=77.9
Q ss_pred EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcEEEE-cccCCCceEEEEEc-CCCcEEEEEe-CCeEEEEe
Q 012410 255 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEV-SRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~l~~-l~gh~~~v~sv~Fs-pdgqllaS~s-D~TIklWd 330 (464)
+.+.|.-+.|...|+...++.+.+||+|+.+.-||++ .++++.. .+-|.+.|.++--| |++..++||+ |-+|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 4554445678899988877778889999999999999 6777765 67799999998766 6788999999 99999999
Q ss_pred CC--CceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 331 FR--GELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 331 ~~--Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
.+ |+.+..-.-- .. ||-+.-+|-
T Consensus 240 tRnm~kPl~~~~v~-GG-----VWRi~~~p~ 264 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVG-GG-----VWRIKHHPE 264 (339)
T ss_pred hhcccCccccCccc-cc-----eEEEEecch
Confidence 84 8876422211 22 888988884
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.23 E-value=0.0031 Score=73.30 Aligned_cols=265 Identities=14% Similarity=0.124 Sum_probs=158.0
Q ss_pred cceeehhcc------CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 98 RDIVFALAH------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 98 g~~l~~l~~------~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
|+++|+.+- ...+++|+++ |+...+- ..-+.+-.+++|.|.|..+|++-. .+++ +.|-++. +.|
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~lIA~~q~-~~~~------~~VvFfE-rNG 290 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNLIASSQR-LPDR------HDVVFFE-RNG 290 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCEEEEEEE-cCCC------cEEEEEe-cCC
Confidence 666665553 3589999955 8755544 456677889999999998888553 2333 4555544 666
Q ss_pred CCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-E-EEec---CCCEeEEEEeCCCceeEEEEE
Q 012410 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-L-YSIS---DKHVQEIKIRSSSHVPLKILS 246 (464)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l-~tl~---~~~V~~Vafs~s~d~tIklWd 246 (464)
--.+.|.+-....-..+..++++ +|+.+||---.|. |.||-..||.- | +.+. ...+..+.|+|..-.++.++.
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 66555544321111223489997 8999999877665 99999999984 2 2443 233445777776666666665
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccC---CCeEEEEeCCCeEEEEECCCCc-----EEEEcccCCCceEEEEEcCCCcEE
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDVRNAE-----LMEVSRTEFMTPSAFIFLYENQLF 318 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~---~~~lla~s~D~tIkIWDv~tg~-----~l~~l~gh~~~v~sv~Fspdgqll 318 (464)
-. |+... . +..+.+++++.. +.-+++-=+..+++|=.++... |...+.-. ..|.+|+|++++..+
T Consensus 369 ~~-g~~~~-~----~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~-~~v~~vaf~~~~~~~ 441 (928)
T PF04762_consen 369 SN-GQYEI-Y----DFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP-SPVNDVAFSPSNSRF 441 (928)
T ss_pred cC-CcEEE-E----EEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC-CCcEEEEEeCCCCeE
Confidence 42 33322 1 223556554321 1112222245677777766654 22333322 478999999999878
Q ss_pred EEEe-CCeEEEEeCC-Cc--------eEEEeccC-----CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 319 LTFR-NRTVAVWNFR-GE--------LVTSFEDH-----LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 319 aS~s-D~TIklWd~~-Ge--------~l~tl~gH-----~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
|.-. |++|.+|... .. +..++..+ ......-.+..++|-.+..+++..+. ...-..|
T Consensus 442 avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i 513 (928)
T PF04762_consen 442 AVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS--------DSNQSKI 513 (928)
T ss_pred EEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec--------CcccceE
Confidence 8877 9999999952 21 11122211 11111123567888877777766553 1124677
Q ss_pred EEEeCC
Q 012410 384 NVSSIL 389 (464)
Q Consensus 384 klWdi~ 389 (464)
-++++.
T Consensus 514 ~~~~~~ 519 (928)
T PF04762_consen 514 VLVDID 519 (928)
T ss_pred EEEEec
Confidence 788763
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.6e-05 Score=81.07 Aligned_cols=241 Identities=16% Similarity=0.188 Sum_probs=162.7
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ- 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~- 206 (464)
|.+.|.-|+-+. -+++++||.+++-+||+... ..-+..+. +...|++-..+++-+ .||-...|.+.
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~-isGvEfVK----------hFraHL~~I~sl~~S-~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSR-ISGVEFVK----------HFRAHLGVILSLAVS-YDGWLFRSVEDP 74 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCC-ccceeehh----------hhHHHHHHHHhhhcc-ccceeEeeccCc
Confidence 777777777766 57899999888888877653 11112211 111122222255555 79999999777
Q ss_pred CCcEEEEeCCCCeEEEEe-----c---------CCCEeEEEEeCCCceeEEEEEcCCCcEEE-EEe-eCCcceeeEEEEc
Q 012410 207 DSIYKVFDLKNYTMLYSI-----S---------DKHVQEIKIRSSSHVPLKILSIEDGTVLK-VFY-HLLHRNKKVDFIE 270 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl-----~---------~~~V~~Vafs~s~d~tIklWdi~tG~~l~-tl~-~~~~~~~~V~F~~ 270 (464)
|+.+|++|+.+..++.-+ + +..+..||++.-.++-|-+.|-.-+-|.. -+. -|..+|..+..++
T Consensus 75 Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q 154 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ 154 (558)
T ss_pred ccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec
Confidence 999999999987765322 2 24467788876667777777765433332 232 3457788888777
Q ss_pred cCCCeEEEEeCCCeEEEEECCC------CcEEEEccc---------CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC
Q 012410 271 QFNEKLLVKQENENLQILDVRN------AELMEVSRT---------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG 333 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~t------g~~l~~l~g---------h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~G 333 (464)
- ++..++.-..|.|.-|...- +++.--++. -...+.++.|||+|..+++.+ |++|++.++ +|
T Consensus 155 a-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 155 A-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred c-ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 4 44445555779999998652 111111111 234688999999999999999 999999999 78
Q ss_pred ceEEEec--------------------------------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 334 ELVTSFE--------------------------------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 334 e~l~tl~--------------------------------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
++++.++ .|..-+ -..+.|-..|++|+=|+. =
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~----~~~~~fdes~~flly~t~------------~ 297 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTV----GTNAVFDESGNFLLYGTI------------L 297 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcc----cceeEEcCCCCEEEeecc------------e
Confidence 8765443 343322 245779999999987764 3
Q ss_pred eEEEEeCCCCeEEEEEc
Q 012410 382 SINVSSILTGKCLAKIN 398 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~ 398 (464)
-||+-|+.|+.|.+.|-
T Consensus 298 gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 298 GIKVINLDTNTVVRILG 314 (558)
T ss_pred eEEEEEeecCeEEEEec
Confidence 49999999999999884
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.17 E-value=0.00096 Score=69.43 Aligned_cols=217 Identities=12% Similarity=0.058 Sum_probs=127.5
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEE-EEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRS-LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~S-v~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
..++.|...+.+|.+.++|..||+.+-..+.. .. +.+ -... +| .+++. ..+ ..+.-.|.++|+.
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~-~~ssP~v~-~~-~v~v~----~~~------g~l~ald~~tG~~- 182 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GE-ALSRPVVS-DG-LVLVH----TSN------GMLQALNESDGAV- 182 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCC-Cc-eecCCEEE-CC-EEEEE----CCC------CEEEEEEccCCCE-
Confidence 34677777888999999999999999887553 23 222 1221 33 34431 222 3566667778875
Q ss_pred CcccceeeccccC------ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--C----C---CEe---------
Q 012410 175 SGFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D----K---HVQ--------- 230 (464)
Q Consensus 175 ~~~~l~~~~~~~~------~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~----~---~V~--------- 230 (464)
+|+.+.-.. ..+-... +|. +..++.|+.+...|.++|+.+-... . . ...
T Consensus 183 ----~W~~~~~~~~~~~~~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 183 ----KWTVNLDVPSLTLRGESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred ----eeeecCCCCcccccCCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 333211000 0111121 343 3345667788888888888764332 0 0 001
Q ss_pred -EEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc--cCCCceE
Q 012410 231 -EIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPS 307 (464)
Q Consensus 231 -~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~--gh~~~v~ 307 (464)
...|-.+.++.+.-+|.++|+.+.+... .....+.. .++.+.+.+.|+.+..+|..+|+.+-... .+.. ..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL-LT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc-cc
Confidence 1111123567888899999998876542 11122222 35788889999999999999998754221 1111 11
Q ss_pred EEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEecc
Q 012410 308 AFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 308 sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~g 341 (464)
+.+ ..+|.+++...|+.|.+.|. +|+.+...+-
T Consensus 330 sp~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 330 APV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CCE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 111 13666665544999999999 7999887653
No 292
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.11 E-value=8e-05 Score=76.31 Aligned_cols=248 Identities=13% Similarity=0.161 Sum_probs=148.4
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe-ccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i-~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
.|..+ .+|.+.|...-.-|--+.+++ .|+| +++|||-= ..||.-....++-. .-+...+|. ++-
T Consensus 16 ll~~~-eG~~d~vn~~~l~~~e~gv~~----~s~d------rtvrv~lkrds~q~wpsI~~~mP---~~~~~~~y~-~e~ 80 (404)
T KOG1409|consen 16 LLSKI-EGSQDDVNAAILIPKEEGVIS----VSED------RTVRVWLKRDSGQYWPSIYHYMP---SPCSAMEYV-SES 80 (404)
T ss_pred hhhhh-cCchhhhhhheeccCCCCeEE----cccc------ceeeeEEeccccccCchhhhhCC---CCceEeeee-ccc
Confidence 34556 457788999888888888999 5578 99999963 23443221111111 112256665 566
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 278 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla 278 (464)
..|.-|=..+++.-+.+ +-+ .+.-..++...-|..++..+-|+.. .+.+++
T Consensus 81 ~~L~vg~~ngtvtefs~-------------------sed---------fnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s 131 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFAL-------------------SED---------FNKMTFLKDYLAHQARVSAIVFSLT-HEWVLS 131 (404)
T ss_pred eEEEEEEecceEEEEEh-------------------hhh---------hhhcchhhhhhhhhcceeeEEecCC-ceeEEE
Confidence 56655544444432222 111 0001111222223467777778763 578888
Q ss_pred EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC---CCceEEEeccCCCCcCCCCeeEE
Q 012410 279 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---RGELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~---~Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
.+.|+.+.=-=.++|.-+ .++.+.-.+.+.-.|=...--|- -+.|.+--+ .-.++.++.||... +.++
T Consensus 132 ~~~dk~~~~hc~e~~~~l---g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~-----~~~l 203 (404)
T KOG1409|consen 132 TGKDKQFAWHCTESGNRL---GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE-----VTCL 203 (404)
T ss_pred eccccceEEEeeccCCcc---cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc-----eEEE
Confidence 888888753333334322 11111100000000000011111 223333322 35678999999987 8899
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
.+.|...+|.||+. |..|-+|||--++- ...++||.+
T Consensus 204 ~Wd~~~~~LfSg~~-----------d~~vi~wdigg~~g~~~el~gh~~------------------------------- 241 (404)
T KOG1409|consen 204 KWDPGQRLLFSGAS-----------DHSVIMWDIGGRKGTAYELQGHND------------------------------- 241 (404)
T ss_pred EEcCCCcEEEeccc-----------cCceEEEeccCCcceeeeeccchh-------------------------------
Confidence 99999999999986 99999999965443 356789986
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+|.+-+--+.|.|+++||.|.+|++
T Consensus 242 ---kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 242 ---KVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred ---hhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 7888888888899999999999999985
No 293
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.07 E-value=0.0032 Score=66.23 Aligned_cols=304 Identities=12% Similarity=0.113 Sum_probs=139.9
Q ss_pred ecccccEeeEeecCCCceEEE-----EEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 114 SRETNRRICFLNVSPDEVIRS-----LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 114 ~~~~g~~l~~ln~~~~~~i~S-----v~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
|..||.++..|...+.. -.+ =.|.+||+.|+-+|.+.. . +...+-|+++|+..+ ++.+.-...
T Consensus 16 D~~TG~~VtrLT~~~~~-~h~~YF~~~~ft~dG~kllF~s~~dg-~------~nly~lDL~t~~i~Q----LTdg~g~~~ 83 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGH-SHRLYFYQNCFTDDGRKLLFASDFDG-N------RNLYLLDLATGEITQ----LTDGPGDNT 83 (386)
T ss_dssp -TTT--EEEE-S-TTS--EE---TTS--B-TTS-EEEEEE-TTS-S-------EEEEEETTT-EEEE-------SS-B-T
T ss_pred CCCCCceEEEecCCCCc-ccceeecCCCcCCCCCEEEEEeccCC-C------cceEEEEcccCEEEE----CccCCCCCc
Confidence 34566665555432221 111 145788999988775432 2 677777888888742 222100001
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEecCCCEeEEEEeC------------------------------
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKIRS------------------------------ 236 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~~~~V~~Vafs~------------------------------ 236 (464)
..... .|+.+.|.+-....+++--||+|.+ ++|.+++.++-...+.+
T Consensus 84 ~g~~~-s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 84 FGGFL-SPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp TT-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred cceEE-ecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 11223 3788898887666788888999876 46888877665555532
Q ss_pred --CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe---CCC-eEEEEECCC-CcEEEEcccCCCceE--
Q 012410 237 --SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENE-NLQILDVRN-AELMEVSRTEFMTPS-- 307 (464)
Q Consensus 237 --s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s---~D~-tIkIWDv~t-g~~l~~l~gh~~~v~-- 307 (464)
..+..|.--|+.||+.-..+... .+..-+.|+|.++..|+-+- .|. +-|||=+.+ |.-.+-+..|....+
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEE
T ss_pred hhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccc
Confidence 13356677799999987777643 67778999997665555543 444 347775544 333333333322111
Q ss_pred EEEEcCCCcEEEE-----Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc-----
Q 012410 308 AFIFLYENQLFLT-----FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW----- 375 (464)
Q Consensus 308 sv~FspdgqllaS-----~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~----- 375 (464)
==-|+|||..|.= ++ +..|.=.|. +|+--.. .+..| ..-...++||+++|-=+...|-+-+
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~--~~~p~-----~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL--MEMPW-----CSHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE--EEE-S-----EEEEEE-TTSSEEEEEE-------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE--EeCCc-----eeeeEEcCCCCEEEecCCCCCccccccccc
Confidence 1128899987654 22 446666777 5654322 12223 2356678999999764431222211
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-Eee
Q 012410 376 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGN 454 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs 454 (464)
...+|.-|.|+++++++-. .|--|.. +|+......+.+. --+.|||||+.++ +..
T Consensus 315 ~~~~~p~i~~~~~~~~~~~-~l~~h~~---------------------sw~v~~~~~q~~h--Php~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFR-KLARHDT---------------------SWKVLDGDRQVTH--PHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ------EEEEEETTTTEEE-EEEE----------------------------BTTBSSTT------EE-TTSSEEEEEE-
T ss_pred eecCCcEEEEeccccCcee-eeeeccC---------------------cceeecCCCccCC--CCCccCCCCCEEEEECC
Confidence 1124568889999887753 3444542 1111111111122 3479999999754 556
Q ss_pred CCCcEEec
Q 012410 455 RHGLVHVW 462 (464)
Q Consensus 455 ~DgtVrlW 462 (464)
..|...|+
T Consensus 371 ~~G~~~vY 378 (386)
T PF14583_consen 371 MEGPPAVY 378 (386)
T ss_dssp TTSS-EEE
T ss_pred CCCCccEE
Confidence 67765553
No 294
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.05 E-value=0.00069 Score=69.62 Aligned_cols=220 Identities=10% Similarity=0.119 Sum_probs=137.7
Q ss_pred cceeehhccCCeEEeee-cccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFS-RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~-~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
-+-|..++.+.++++|- +..||.-..+-......++++.|+++-..|.. +-++ .++.-..+ .-.++.
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~v----g~~n------gtvtefs~-sedfnk- 103 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYV----GQDN------GTVTEFAL-SEDFNK- 103 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEE----EEec------ceEEEEEh-hhhhhh-
Confidence 46678899999999995 22455433333334456888888888777766 3344 22222221 111111
Q ss_pred ccceeeccccCce---EEEEeCCCCcEEEEecCCCcEEEEe-CCCCeEE--EEec---CC--CEeEEEEeCCCceeEEEE
Q 012410 177 FALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFD-LKNYTML--YSIS---DK--HVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 177 ~~l~~~~~~~~~~---~VaFs~pdGk~LaSgs~D~tiKlWd-l~tg~~l--~tl~---~~--~V~~Vafs~s~d~tIklW 245 (464)
.++....+.|.. .+-|+. --..+.|.+.|+.+ .|- .+.|+.| |.+. .. ..-..+|-.+..++|.+.
T Consensus 104 -m~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 104 -MTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITML 180 (404)
T ss_pred -cchhhhhhhhhcceeeEEecC-CceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEE
Confidence 111111223333 578874 44567788889876 554 4455554 3332 11 122266655555555555
Q ss_pred EcC--CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE-EEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 246 SIE--DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 246 di~--tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l-~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
.++ .=..+.+++++...+.+..+.+. ++.|.++..|..+-+||+--++-+ ..+.+|.+.|.++...+--+.+.|.+
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ 259 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG 259 (404)
T ss_pred EEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc
Confidence 443 33455677777788899999773 455556789999999998876654 47889999999998777777777877
Q ss_pred -CCeEEEEeCCC
Q 012410 323 -NRTVAVWNFRG 333 (464)
Q Consensus 323 -D~TIklWd~~G 333 (464)
|+-|-+||.+-
T Consensus 260 edg~i~~w~mn~ 271 (404)
T KOG1409|consen 260 EDGGIVVWNMNV 271 (404)
T ss_pred CCCeEEEEeccc
Confidence 99999999643
No 295
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.00 E-value=0.0017 Score=66.81 Aligned_cols=232 Identities=15% Similarity=0.155 Sum_probs=130.3
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC-----------c
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS-----------G 176 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~-----------~ 176 (464)
+..-+||+.+++....... ...+....+||+|+.++-+. + +-+.+.++.+|+..+ |
T Consensus 23 ~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~----~-------~nly~~~~~~~~~~~lT~dg~~~i~nG 89 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR----D-------NNLYLRDLATGQETQLTTDGEPGIYNG 89 (353)
T ss_dssp EEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE----T-------TEEEEESSTTSEEEESES--TTTEEES
T ss_pred eeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe----c-------CceEEEECCCCCeEEeccccceeEEcC
Confidence 4677888777654443322 45678899999999998855 2 245555554553311 1
Q ss_pred ccce--eeccccCceEEEEeCCCCcEEEEecCCC-cEEEEeCCCCeEEEEecCC----CEeEEEEeC----CCceeEEEE
Q 012410 177 FALF--ESESLKWPGFVEFDDVNGKVLTYSAQDS-IYKVFDLKNYTMLYSISDK----HVQEIKIRS----SSHVPLKIL 245 (464)
Q Consensus 177 ~~l~--~~~~~~~~~~VaFs~pdGk~LaSgs~D~-tiKlWdl~tg~~l~tl~~~----~V~~Vafs~----s~d~tIklW 245 (464)
.+.| +.|.++....+-|| |||+.||....|. .|+.+.+ ....... .+..++++- .....+.|+
T Consensus 90 ~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~-----~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~ 163 (353)
T PF00930_consen 90 VPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPL-----PDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVV 163 (353)
T ss_dssp B--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEE-----EEESSSTESS-EEEEEE--BTTS---EEEEEEE
T ss_pred ccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEe-----eccCCccccCCcccccccCCCCCcCCceEEEEE
Confidence 1111 11235555589998 9999999876653 3333322 2222222 366777742 233567778
Q ss_pred EcCCCcEEE-EEe----eCCcceeeEEEEccCCCeEEEE--eCC---CeEEEEECCCCcEEEEccc----CCCceEEEEE
Q 012410 246 SIEDGTVLK-VFY----HLLHRNKKVDFIEQFNEKLLVK--QEN---ENLQILDVRNAELMEVSRT----EFMTPSAFIF 311 (464)
Q Consensus 246 di~tG~~l~-tl~----~~~~~~~~V~F~~~~~~~lla~--s~D---~tIkIWDv~tg~~l~~l~g----h~~~v~sv~F 311 (464)
|+++|+... ... ...+-+..|.|+++ +.++++. ..+ -.+.+.|+.+|++...... .-.....+.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 164 DLASGKTTELDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp ESSSTCCCEE---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred ECCCCcEEEeeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 999998642 221 12245588999885 3436653 333 4456789999887544322 2222235666
Q ss_pred c-CCCcEEEEEe--CCeEEEEeC--CCceEEEeccCCCCcCCCCe-eEEEECCCCCEEE
Q 012410 312 L-YENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHPDCNT-NNIYITSDQDLII 364 (464)
Q Consensus 312 s-pdgqllaS~s--D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v-~svafSpDg~~La 364 (464)
. +++..++-.+ ||--.|+-+ +|...+-|+.. .|. | ..+.++++++.|.
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~----V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWE----VTSILGWDEDNNRIY 296 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-----EEEEEEEECTSSEEE
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-cee----ecccceEcCCCCEEE
Confidence 5 7777666655 886666654 67777766644 342 5 4578889888765
No 296
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.00 E-value=2.2e-05 Score=50.32 Aligned_cols=27 Identities=15% Similarity=0.502 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 437 DITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 437 ~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|+++.|+|+++.+++|+.|+.|++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 899999999999999999999999997
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.00 E-value=0.017 Score=61.89 Aligned_cols=109 Identities=11% Similarity=0.039 Sum_probs=76.7
Q ss_pred eEEEEEcCCCcEEEEEe-CC-eEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~-TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
|+=..++-+++-++-|- |+ .+-|+|.+|-.++.+++...- |.++..+|||+.++-+-. -.-|
T Consensus 362 VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~-----I~av~vs~dGK~~vvaNd-----------r~el 425 (668)
T COG4946 362 VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGN-----IEAVKVSPDGKKVVVAND-----------RFEL 425 (668)
T ss_pred eEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccc-----eEEEEEcCCCcEEEEEcC-----------ceEE
Confidence 34344555556666676 77 888999876667777777665 899999999999888754 5667
Q ss_pred EEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC----CcE
Q 012410 384 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----GLV 459 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D----gtV 459 (464)
-+-|+.||+.-- +.- + +- .-|+..++||++..||=+=-+ +.|
T Consensus 426 ~vididngnv~~-idk-S---------~~-----------------------~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 426 WVIDIDNGNVRL-IDK-S---------EY-----------------------GLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred EEEEecCCCeeE-ecc-c---------cc-----------------------ceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 777998887422 211 1 10 168899999999999966444 457
Q ss_pred EeccC
Q 012410 460 HVWSN 464 (464)
Q Consensus 460 rlWd~ 464 (464)
||.|+
T Consensus 472 klydm 476 (668)
T COG4946 472 KLYDM 476 (668)
T ss_pred EEEec
Confidence 77764
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.99 E-value=1.5e-05 Score=80.81 Aligned_cols=251 Identities=13% Similarity=0.168 Sum_probs=140.6
Q ss_pred eeeeecCCCCCcccchhhhccccceEEEEec----cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCC
Q 012410 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA----RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND 142 (464)
Q Consensus 67 ~~~~~~~~~~~~~~~l~~l~~~s~v~~~~~a----g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~ 142 (464)
-||.-|+++-.+...|.- ..+|.+|-.. .+-..+...+.++++|. .-.+.|.-+ +.+.+--+ |.+|-|.
T Consensus 67 teFQshe~EFDYLkSlei---eEKin~I~w~~~t~r~hFLlstNdktiKlWK-iyeknlk~v--a~nnls~~-~~~~~~g 139 (460)
T COG5170 67 TEFQSHELEFDYLKSLEI---EEKINAIEWFDDTGRNHFLLSTNDKTIKLWK-IYEKNLKVV--AENNLSDS-FHSPMGG 139 (460)
T ss_pred hhhcccccchhhhhhccH---HHHhhheeeecCCCcceEEEecCCceeeeee-eecccchhh--hccccccc-cccccCC
Confidence 456667776544333322 2344444332 22233445677999997 445555554 23343333 3344332
Q ss_pred EEEEEEeecCCCCcccceeeEEEEEeccCCCCC------cc--cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEe
Q 012410 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS------GF--ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 214 (464)
Q Consensus 143 ~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~------~~--~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWd 214 (464)
-|.+ ...+..+++.. .. .....-|--|++++.|. .|.+++.| +.|--|-||+
T Consensus 140 ~~~s------------------~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~et~lS-aDdLrINLWn 199 (460)
T COG5170 140 PLTS------------------TKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDKETLLS-ADDLRINLWN 199 (460)
T ss_pred CcCC------------------HHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cchheeee-ccceeeeecc
Confidence 2222 11223333321 00 11212234566799997 68888885 5677899999
Q ss_pred CCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc
Q 012410 215 LKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294 (464)
Q Consensus 215 l~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~ 294 (464)
+.- . |+..-|-||.-- ..+.+..-+.+..|+|+....+.-++..|+|+|-|+++..
T Consensus 200 l~i-------~-------------D~sFnIVDiKP~----nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 200 LEI-------I-------------DGSFNIVDIKPH----NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred ccc-------c-------------CCceEEEeccCc----cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 752 1 222222222210 0011112235566778654455557788999999998543
Q ss_pred -EEE-------Ecc--------cCCCceEEEEEcCCCcEEEEEeCCeEEEEeCC--CceEEEeccCCC--------CcCC
Q 012410 295 -LME-------VSR--------TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLL--------WHPD 348 (464)
Q Consensus 295 -~l~-------~l~--------gh~~~v~sv~FspdgqllaS~sD~TIklWd~~--Ge~l~tl~gH~~--------~~~~ 348 (464)
|.. ++. +-...++.+-|+|.|++++|-+=-||||||++ ..|+.|..=|.. +-.|
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 221 111 11235677889999999998877799999993 779998865533 1112
Q ss_pred CC--eeEEEECCCCCEEEEEec
Q 012410 349 CN--TNNIYITSDQDLIISYCK 368 (464)
Q Consensus 349 ~~--v~svafSpDg~~LaSgs~ 368 (464)
|. -.-+.||-|.+.+.|||.
T Consensus 336 aifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred ceeeeEEEEecCCccccccccc
Confidence 20 235789999999999986
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.99 E-value=0.00069 Score=67.85 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=137.5
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEE------------eCCCceeEEEEEcCCCcEEEEEeeCC-cceee
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI------------RSSSHVPLKILSIEDGTVLKVFYHLL-HRNKK 265 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vaf------------s~s~d~tIklWdi~tG~~l~tl~~~~-~~~~~ 265 (464)
.+||-|++-+..++|.+.|-+-...+.+..+.+|.+ -.+.|+|+|+.+++ |..++..-|.. -...+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~-~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS-GDSNKFAVHNQNLTQNS 163 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEe-cCcccceeeccccceee
Confidence 489999999999999998655443333222222222 23789999999997 44444433321 12588
Q ss_pred EEEEccCCCeEEE-EeCCCeEEEEECCC-CcEE-E-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceEEE
Q 012410 266 VDFIEQFNEKLLV-KQENENLQILDVRN-AELM-E-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTS 338 (464)
Q Consensus 266 V~F~~~~~~~lla-~s~D~tIkIWDv~t-g~~l-~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l~t 338 (464)
.+.+++ +++++ -++-..|-.+.+.. ++.+ + .+...++.-....||-...+||++. |+++.|||++ +.+..+
T Consensus 164 ~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 164 LHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 888774 45555 46667777765544 4443 3 3344445566788999999999999 9999999994 665443
Q ss_pred eccCCCCcCCCCeeEEEECCCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCC
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 415 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~---~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~ 415 (464)
... +-.+++..++++-|||-|- +++|-. =+-+.+-|+.+++-.+.+....+ +..++
T Consensus 242 ~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEh------------fs~~hv~D~R~~~~~q~I~i~~d----~~~~~---- 300 (344)
T KOG4532|consen 242 ISS-TRPHHNGAFRVCRFSLYGLLDLLFISEH------------FSRVHVVDTRNYVNHQVIVIPDD----VERKH---- 300 (344)
T ss_pred hcc-cCCCCCCceEEEEecCCCcceEEEEecC------------cceEEEEEcccCceeeEEecCcc----ccccc----
Confidence 221 1111223389999997543 333322 46788999988876555533322 11111
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 416 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
+.+.|..-.|+.++.-+...++++.
T Consensus 301 ------------------~tq~ifgt~f~~~n~s~~v~~e~~~ 325 (344)
T KOG4532|consen 301 ------------------NTQHIFGTNFNNENESNDVKNELQG 325 (344)
T ss_pred ------------------cccccccccccCCCcccccccchhh
Confidence 2235777788888888888777653
No 300
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.96 E-value=0.00095 Score=73.82 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=112.7
Q ss_pred EEEeCCCCcEEE-EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCce-eEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 191 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHV-PLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 191 VaFs~pdGk~La-Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~-tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
|=++ |||+.|- ++-..+.+-+.|.++.+...++. +.+-..++++|+... -+--.|.|.|.-+..+.-. .+-+.+.
T Consensus 198 ~Plp-nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~-e~d~~vv 275 (635)
T PRK02888 198 IPLP-NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA-ERDWVVV 275 (635)
T ss_pred cccC-CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccc-cCceEEE
Confidence 5564 7887663 34556788888888877666555 455566777764221 1222344666655555311 1225555
Q ss_pred EEcc-------CCCeEEEEeCCCeEEEEECCC----C-cEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-C
Q 012410 268 FIEQ-------FNEKLLVKQENENLQILDVRN----A-ELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-R 332 (464)
Q Consensus 268 F~~~-------~~~~lla~s~D~tIkIWDv~t----g-~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~ 332 (464)
|... ++....+ .+++|.+.|.++ + +.+..+.. ...|+.+++||||+.+..++ +.||-|-|+ .
T Consensus 276 fni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred EchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 5442 1222223 367899999998 3 45554332 25789999999999988887 999999998 3
Q ss_pred Cc------------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 333 GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 333 Ge------------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
-+ .+.+.+-=..+ .-.+|.++|....|-.- |..|-.||+.+
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGP------LHTaFDg~G~aytslf~-----------dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGP------LHTAFDGRGNAYTTLFL-----------DSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCc------ceEEECCCCCEEEeEee-----------cceeEEEehHH
Confidence 33 23333322222 24789999987777654 77888999876
No 301
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00022 Score=71.92 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=100.0
Q ss_pred EeCCCeEEEEECCCCcEEEEcccCC------CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEE--EeccCCCCcCC
Q 012410 279 KQENENLQILDVRNAELMEVSRTEF------MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT--SFEDHLLWHPD 348 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~l~~l~gh~------~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~--tl~gH~~~~~~ 348 (464)
.-.+|.|+++-..-.+....|++=. ..--++.|++-|.-++++- +|.+.+=+. .+.+.+ +++.|...
T Consensus 91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--- 167 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--- 167 (339)
T ss_pred ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee---
Confidence 3456677776544444333333321 0123566888888888887 999986666 466655 99999987
Q ss_pred CCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEE-EccCCCCCCcccccCCCCCCccccccccc
Q 012410 349 CNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 349 ~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~t-l~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
.|...|+... +++.+|++ |+.+.-||+. .++|+.+ .+-|+.
T Consensus 168 --~Wta~f~~~~pnlvytGgD-----------D~~l~~~D~R~p~~~i~~n~kvH~~----------------------- 211 (339)
T KOG0280|consen 168 --AWTAKFSDKEPNLVYTGGD-----------DGSLSCWDIRIPKTFIWHNSKVHTS----------------------- 211 (339)
T ss_pred --eeeeecccCCCceEEecCC-----------CceEEEEEecCCcceeeecceeeec-----------------------
Confidence 7888898744 57788876 9999999998 7788876 666775
Q ss_pred cccccccccccCEEEEEEcC-CCCEEEEeeCCCcEEeccC
Q 012410 426 YIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafsp-Dg~~LaSgs~DgtVrlWd~ 464 (464)
.|.|+.-|| ++..|||||-|..||+||.
T Consensus 212 -----------GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt 240 (339)
T KOG0280|consen 212 -----------GVVSIYSSPPKPTYIATGSYDECIRVLDT 240 (339)
T ss_pred -----------ceEEEecCCCCCceEEEeccccceeeeeh
Confidence 788888876 5789999999999999983
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.94 E-value=0.012 Score=68.45 Aligned_cols=192 Identities=10% Similarity=0.093 Sum_probs=110.7
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe---CCCeEEEEECCCCcEEEEc--c--cCCCceEEEEE
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVS--R--TEFMTPSAFIF 311 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s---~D~tIkIWDv~tg~~l~~l--~--gh~~~v~sv~F 311 (464)
-..||||+-+ |++..+-+--.+---.++|-|. |..|++.+ ....|-.|. ++|.....+ + .....|..+.|
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPS-GNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred eeEEEEECCC-ceEEeccccCCCccCCccCCCC-CCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEE
Confidence 4789999987 8876666521111256777774 44444444 457777888 888765432 2 34467899999
Q ss_pred cCCCcEEEEEeCCeEEEEeC-CCc--eEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 312 LYENQLFLTFRNRTVAVWNF-RGE--LVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 312 spdgqllaS~sD~TIklWd~-~Ge--~l~tl~gH~~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
++|+.+||.--..+|+||-. +-. +.+.+.-.... .+..+.|+|. ...|...+. .|.+...+
T Consensus 313 n~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~----~~~~~~Wdpe~p~~L~v~t~-----------~g~~~~~~ 377 (928)
T PF04762_consen 313 NSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSE----SVNFVKWDPEKPLRLHVLTS-----------NGQYEIYD 377 (928)
T ss_pred CCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCC----CCCceEECCCCCCEEEEEec-----------CCcEEEEE
Confidence 99999999977445999986 322 45555532221 0234777773 333444442 34454433
Q ss_pred ----CCCCe--------EEEEEccCCCC--CC--cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 388 ----ILTGK--------CLAKINATNCS--PK--VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 388 ----i~tG~--------cl~tl~gh~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
+..+. .++.+.|..-. |- ..+.+| |....=+.-..|..|+|+|++..+|
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP---------------Ms~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP---------------MSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch---------------HhceEEcCCCCcEEEEEeCCCCeEE
Confidence 22221 12333332210 00 001000 0000001123899999999999999
Q ss_pred EeeCCCcEEecc
Q 012410 452 TGNRHGLVHVWS 463 (464)
Q Consensus 452 Sgs~DgtVrlWd 463 (464)
.-..||+|.+|.
T Consensus 443 vl~~d~~l~~~~ 454 (928)
T PF04762_consen 443 VLTSDGSLSIYE 454 (928)
T ss_pred EEECCCCEEEEE
Confidence 999999999986
No 303
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.93 E-value=0.0084 Score=64.76 Aligned_cols=268 Identities=12% Similarity=0.124 Sum_probs=144.9
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCc-------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE-------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~-------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
..++.|...+.+|.+.+.|..+|+.+-..+..... ..+.+.+. +++.++. ++.+ ..+.-.|.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v----~~~~------g~v~AlD~ 127 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFF----GTFD------GRLVALDA 127 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEE----ecCC------CeEEEEEC
Confidence 33666777777899999999999998877543320 11111111 2134444 1223 35555677
Q ss_pred ccCCCCCcccceeeccccC-------ceEEEEeCCCCcEEEEec---------CCCcEEEEeCCCCeEEEEecC------
Q 012410 169 RRGKPDSGFALFESESLKW-------PGFVEFDDVNGKVLTYSA---------QDSIYKVFDLKNYTMLYSISD------ 226 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~-------~~~VaFs~pdGk~LaSgs---------~D~tiKlWdl~tg~~l~tl~~------ 226 (464)
++|+. +|+.+.... ..+..+. ++.+++ ++ .++.+.-.|.+||+.+-....
T Consensus 128 ~TG~~-----~W~~~~~~~~~~~~~i~ssP~v~--~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~ 199 (488)
T cd00216 128 ETGKQ-----VWKFGNNDQVPPGYTMTGAPTIV--KKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN 199 (488)
T ss_pred CCCCE-----eeeecCCCCcCcceEecCCCEEE--CCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC
Confidence 88886 333221111 0133443 354443 43 367788889999998754431
Q ss_pred ----------------CCEe---------EEEEeCCC------------------ceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 227 ----------------KHVQ---------EIKIRSSS------------------HVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 227 ----------------~~V~---------~Vafs~s~------------------d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
..|| ...|=+.. +..|--+|++||+++-.++...+..
T Consensus 200 ~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~ 279 (488)
T cd00216 200 AFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL 279 (488)
T ss_pred CCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC
Confidence 0111 11221111 2368899999999999886322222
Q ss_pred e------eEEEEc---cCCC---eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEE----------
Q 012410 264 K------KVDFIE---QFNE---KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF---------- 321 (464)
Q Consensus 264 ~------~V~F~~---~~~~---~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~---------- 321 (464)
+ .....+ .+++ .+++++.++.+...|.++|+.+-....-. ...+.+| +.+++.+
T Consensus 280 ~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~~vyv~~~~~~~~~~~~ 355 (488)
T cd00216 280 WDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-GLVYLGAFHIPLGLPPQ 355 (488)
T ss_pred cccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-ceEEEccccccccCccc
Confidence 1 111111 1222 35668899999999999999875432100 1122233 3333321
Q ss_pred -------e-CCeEEEEeC-CCceEEEeccCC---CCcCCCC--eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 322 -------R-NRTVAVWNF-RGELVTSFEDHL---LWHPDCN--TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 322 -------s-D~TIklWd~-~Ge~l~tl~gH~---~~~~~~~--v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
. ++.+---|. +|+.+=+.+--. .|-.+.. ...++. .+.+|..++. ||.|.-.|
T Consensus 356 ~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~-----------dG~l~ald 422 (488)
T cd00216 356 KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAA-----------DGYFRAFD 422 (488)
T ss_pred ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECC-----------CCeEEEEE
Confidence 1 455656666 566654443220 0000000 012222 4567777765 99999999
Q ss_pred CCCCeEEEEEcc
Q 012410 388 ILTGKCLAKINA 399 (464)
Q Consensus 388 i~tG~cl~tl~g 399 (464)
..||+.+.+++-
T Consensus 423 ~~tG~~lW~~~~ 434 (488)
T cd00216 423 ATTGKELWKFRT 434 (488)
T ss_pred CCCCceeeEEEC
Confidence 999999988754
No 304
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.83 E-value=0.017 Score=59.94 Aligned_cols=270 Identities=13% Similarity=0.186 Sum_probs=157.9
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc--cc---ceee
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FA---LFES 182 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~--~~---l~~~ 182 (464)
+.+.++|..+++.|-.+..+. .-.+..||+|+.+.+++.|-+-...+-.---+.+||.++=++.+. .| -+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~- 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ- 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-
Confidence 468888888888888885543 445778999999999999887664444445677888766444221 11 111
Q ss_pred ccccCceEEEEeCCCCcEEEE--ecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC-------CCceeEEEEEcC-CCcE
Q 012410 183 ESLKWPGFVEFDDVNGKVLTY--SAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS-------SSHVPLKILSIE-DGTV 252 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaS--gs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~-------s~d~tIklWdi~-tG~~ 252 (464)
...+++..++| .|||.|.- .+.-..|-|=|++..+.+..+..-..+.|=-++ -.|+++---.+. +|+.
T Consensus 93 -~~~~~~~~~ls-~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 93 -VVPYKNMFALS-ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp -BS--GGGEEE--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred -ecccccceEEc-cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 22455578998 79998764 345667999999999988777633332221111 156655555554 6777
Q ss_pred EEEEeeCCcceeeEEE-----EccCCCeEEEEeCCCeEEEEECCCCcEE-----EEcc-cC--CCc-e---EEEEEcCC-
Q 012410 253 LKVFYHLLHRNKKVDF-----IEQFNEKLLVKQENENLQILDVRNAELM-----EVSR-TE--FMT-P---SAFIFLYE- 314 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F-----~~~~~~~lla~s~D~tIkIWDv~tg~~l-----~~l~-gh--~~~-v---~sv~Fspd- 314 (464)
.++-..--+......| .. .+++++--+.+|.|+--|+...+.. ..+. .+ ..| | --+++.+.
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred eEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 6443211111112222 22 3456777788888888786665421 1111 00 011 0 13667754
Q ss_pred CcEEEE------Ee--CCeEEEE--eC-CCceEEEec-cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCC
Q 012410 315 NQLFLT------FR--NRTVAVW--NF-RGELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 315 gqllaS------~s--D~TIklW--d~-~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~Dg 381 (464)
+++++- ++ |.-=.|| |. +++.+..++ +|. +++|++|-|.+ +|...+. .++
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~----------~~~ 312 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSA----------GDG 312 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEET----------TTT
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcC----------CCC
Confidence 454443 12 3334455 66 699999887 342 67999999998 5544443 389
Q ss_pred eEEEEeCCCCeEEEEEccCC
Q 012410 382 SINVSSILTGKCLAKINATN 401 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~gh~ 401 (464)
++.++|..||+.++++.+-.
T Consensus 313 ~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EEEEEETTT--EEEEE---S
T ss_pred eEEEEeCcCCcEEeehhccC
Confidence 99999999999999997643
No 305
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.001 Score=71.86 Aligned_cols=178 Identities=11% Similarity=0.214 Sum_probs=122.5
Q ss_pred cCce-EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 186 KWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 186 ~~~~-~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
.|.. .|.|| |-|.+|+|=-.-| |-||-=++...++.+..-.|+-|.|||. -+.|.|+.
T Consensus 210 nWTetyv~wS-P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~------------EkYLVT~s------- 268 (698)
T KOG2314|consen 210 NWTETYVRWS-PKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPN------------EKYLVTYS------- 268 (698)
T ss_pred cceeeeEEec-CCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCc------------cceEEEec-------
Confidence 3444 79998 9999999877666 7799877777777776677888888887 23333332
Q ss_pred eEEEEccCCCeEEE--EeCCCeEEEEECCCCcEEEEccc--CCCceEE-EEEcCCCcEEEEEeCCeEEEEeCCCceEEEe
Q 012410 265 KVDFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRT--EFMTPSA-FIFLYENQLFLTFRNRTVAVWNFRGELVTSF 339 (464)
Q Consensus 265 ~V~F~~~~~~~lla--~s~D~tIkIWDv~tg~~l~~l~g--h~~~v~s-v~FspdgqllaS~sD~TIklWd~~Ge~l~tl 339 (464)
|. ...+. ..+.+.|.|||++||.+++.+.. ....+|. |-+|.|++++|.-.-.+|.|++..- ..-|
T Consensus 269 -----~~--p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps--f~ll 339 (698)
T KOG2314|consen 269 -----PE--PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS--FMLL 339 (698)
T ss_pred -----CC--ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc--eeee
Confidence 11 00000 23558899999999999987765 4445554 5599999999987756799999632 3345
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
++....+.+ |..-.|||-+++||=... +.+.+ -.++-|=.+.+++-|++-+-|+
T Consensus 340 d~Kslki~g--Ir~FswsP~~~llAYwtp-e~~~~-----parvtL~evPs~~~iRt~nlfn 393 (698)
T KOG2314|consen 340 DKKSLKISG--IRDFSWSPTSNLLAYWTP-ETNNI-----PARVTLMEVPSKREIRTKNLFN 393 (698)
T ss_pred cccccCCcc--ccCcccCCCcceEEEEcc-cccCC-----cceEEEEecCccceeeecccee
Confidence 555555544 778889999999987653 22222 3466777777777777665554
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.77 E-value=0.0026 Score=65.01 Aligned_cols=205 Identities=15% Similarity=0.212 Sum_probs=120.3
Q ss_pred EEEEeCCCCcEEEEecCCCc-EEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSI-YKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~t-iKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
.++.++..+..+|.+-.-++ .-+||..+|+.+..+.. +.| +-|.+| ..|
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---------------------~~g---RHFyGH------g~f 58 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---------------------PPG---RHFYGH------GVF 58 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC---------------------CCC---CEEecC------EEE
Confidence 45665225666666655554 34666666666554431 112 122322 356
Q ss_pred EccCCCeEEEEe-----CCCeEEEEECC-CCcEEEEcccCCCceEEEEEcCCCcEEEEEeC--------C----------
Q 012410 269 IEQFNEKLLVKQ-----ENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--------R---------- 324 (464)
Q Consensus 269 ~~~~~~~lla~s-----~D~tIkIWDv~-tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD--------~---------- 324 (464)
+++ +..|.+.- .-|-|-|||+. +-+.+..+.+|-..|-.+.+.|||+.|+.+.- +
T Consensus 59 s~d-G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ 137 (305)
T PF07433_consen 59 SPD-GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQ 137 (305)
T ss_pred cCC-CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcC
Confidence 663 44444432 23789999999 66777889999889999999999988777541 2
Q ss_pred -eEEEEeC-CCceEEE--e--ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 325 -TVAVWNF-RGELVTS--F--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 325 -TIklWd~-~Ge~l~t--l--~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
++-+-|. +|+++.. | ..|.+. ++-+++.+||..++..=. +.+.. ..---|-+++ -|+-+.-+.
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lS-----iRHLa~~~~G~V~~a~Q~-qg~~~---~~~PLva~~~--~g~~~~~~~ 206 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLS-----IRHLAVDGDGTVAFAMQY-QGDPG---DAPPLVALHR--RGGALRLLP 206 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccc-----eeeEEecCCCcEEEEEec-CCCCC---ccCCeEEEEc--CCCcceecc
Confidence 2334455 6998775 7 558776 889999999987765421 11100 0011222332 222222221
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE-EEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L-aSgs~DgtVrlWd 463 (464)
.-.. ....|. ..|=||+|++||..+ +|+-.-+.+.+||
T Consensus 207 ~p~~--------------------~~~~l~-------~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 207 APEE--------------------QWRRLN-------GYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred CChH--------------------HHHhhC-------CceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 1110 000000 288999999999877 5666888999997
No 307
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.75 E-value=0.0021 Score=71.20 Aligned_cols=201 Identities=12% Similarity=0.131 Sum_probs=123.2
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------------CceeEEEEEcCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------------SHVPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------------~d~tIklWdi~t 249 (464)
-+.|.-++|+ |||+.+.+.+.+. +.|.-+..+. ...=+.++|++. .+.+|.+.|..+
T Consensus 234 dgnpd~v~~s-pdGk~afvTsyNs-------E~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t 305 (635)
T PRK02888 234 DGNLDNVDTD-YDGKYAFSTCYNS-------EEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK 305 (635)
T ss_pred CCCcccceEC-CCCCEEEEeccCc-------ccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence 3566689997 8999998887543 2344333332 111144555431 346799999998
Q ss_pred ----C-cEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcE------------EEEcccCCCceEEEEE
Q 012410 250 ----G-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL------------MEVSRTEFMTPSAFIF 311 (464)
Q Consensus 250 ----G-~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~------------l~~l~gh~~~v~sv~F 311 (464)
| +.+..+.-. .+-+.|+++| ++.++++++ .+.++-+.|+.+.+- .....- ...|.-.+|
T Consensus 306 ~~~~~~~v~~yIPVG-KsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaF 382 (635)
T PRK02888 306 AANAGSALTRYVPVP-KNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAF 382 (635)
T ss_pred cccCCcceEEEEECC-CCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEE
Confidence 4 566665521 4458899999 466666654 899999999998652 111111 235667789
Q ss_pred cCCCcEEEEEe-CCeEEEEeCC-------C----ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc-----
Q 012410 312 LYENQLFLTFR-NRTVAVWNFR-------G----ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ----- 374 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~~-------G----e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~----- 374 (464)
.++|..+.|-- |..|-.||+. | ..+..+.-|.+.-..+....=.-.|||++|+|.++- +.|+
T Consensus 383 Dg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~-skdrfl~vg 461 (635)
T PRK02888 383 DGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF-SKDRFLPVG 461 (635)
T ss_pred CCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc-ccccccCCC
Confidence 99999888877 9999999973 2 345555545443110000111128999999999873 2222
Q ss_pred -cccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 375 -WMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 375 -~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
+-.-+++ |-|| +|.-++-+..|.
T Consensus 462 pl~pen~q---lidI-sgdkM~lv~d~p 485 (635)
T PRK02888 462 PLHPENDQ---LIDI-SGDKMKLVHDGP 485 (635)
T ss_pred CCCCCcce---eEEc-cCCeeEEEecCC
Confidence 1111334 5565 676666665443
No 308
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.085 Score=55.28 Aligned_cols=261 Identities=10% Similarity=0.074 Sum_probs=173.8
Q ss_pred EEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce
Q 012410 110 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 189 (464)
Q Consensus 110 ~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~ 189 (464)
+.+++..+++....+.. .. ....+.++|+|..+..+..... .+-.+... .+..-..... -..+|.
T Consensus 13 ~~v~~~~~~~~~~~~~~-~~-~~~~v~~~~~g~~~~v~~~~~~-----------~~~~~~~~-~n~~~~~~~~-g~~~p~ 77 (381)
T COG3391 13 VSVINTGTNKVTAAISL-GR-GPGGVAVNPDGTQVYVANSGSN-----------DVSVIDAT-SNTVTQSLSV-GGVYPA 77 (381)
T ss_pred eEEEeecccEEEEEeec-CC-CCceeEEcCccCEEEEEeecCc-----------eeeecccc-cceeeeeccC-CCcccc
Confidence 55555455555555533 22 5788999999977766442221 12222333 2111110011 114566
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----------CceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----------~d~tIklWdi~tG~~l~tl~ 257 (464)
.+++++...++.+....+.+|.+-|.++.+++.++. ...-..++++|+ ...++-+.|-.+++.+++..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 788874444477777778999999999999988876 446678888873 36899999999999999865
Q ss_pred eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEE-E---cccCCCceEEEEEcCCCcEEEEEe--C--CeEEE
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELME-V---SRTEFMTPSAFIFLYENQLFLTFR--N--RTVAV 328 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~-~---l~gh~~~v~sv~FspdgqllaS~s--D--~TIkl 328 (464)
-...+ ..++|.| +++++.+. ..+++|.+.|.++-...+ . ..+-...+.-++++|||+.+-... + ++|..
T Consensus 158 vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 22133 8899988 46667775 589999999977776664 1 112234678899999999555544 3 68999
Q ss_pred EeC-CCceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 329 WNF-RGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 329 Wd~-~Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
-|. ++....+ +..-..+ -..++++|+|+.+..... ..+++.+=|..+.+...++.....
T Consensus 236 id~~~~~v~~~~~~~~~~~-----~~~v~~~p~g~~~yv~~~----------~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 236 IDTATGNVTATDLPVGSGA-----PRGVAVDPAGKAAYVANS----------QGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred EeCCCceEEEeccccccCC-----CCceeECCCCCEEEEEec----------CCCeEEEEeCCCCceeeeeccccc
Confidence 998 5776664 3322222 246899999999987643 258899999888888887766553
No 309
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.046 Score=57.29 Aligned_cols=220 Identities=15% Similarity=0.139 Sum_probs=142.4
Q ss_pred CceEEEEeCCCC-cEEEEecCCCcEEEEeCCCCeEEEEe--c-C-CCEeEEEEeCC---------CceeEEEEEcCCCcE
Q 012410 187 WPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSI--S-D-KHVQEIKIRSS---------SHVPLKILSIEDGTV 252 (464)
Q Consensus 187 ~~~~VaFs~pdG-k~LaSgs~D~tiKlWdl~tg~~l~tl--~-~-~~V~~Vafs~s---------~d~tIklWdi~tG~~ 252 (464)
+|..|+.. |+| +..+.-+...++.+-+.. ....+. . . ..-+.+++++. .+..|.+.|.++-++
T Consensus 32 ~~~~v~~~-~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVN-PDGTQVYVANSGSNDVSVIDAT--SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEc-CccCEEEEEeecCceeeecccc--cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 66688886 788 444433333355554433 111111 1 1 22346666542 467899999988888
Q ss_pred EEEEe-eCCcceeeEEEEccCCCeEEEEe---CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEE-e-CCeE
Q 012410 253 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTV 326 (464)
Q Consensus 253 l~tl~-~~~~~~~~V~F~~~~~~~lla~s---~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~-s-D~TI 326 (464)
+.+.. +. .-..++|.+. ++++.++. .++++.+.|-.+++.+++...- ..+..++|.|+|+.+... . +++|
T Consensus 109 ~~~~~vG~--~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 109 LGSIPVGL--GPVGLAVDPD-GKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred eeEeeecc--CCceEEECCC-CCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCcceEEECCCCCeEEEEecCCCeE
Confidence 88776 32 3378888884 66776653 4899999999999988874332 245899999999955444 4 9999
Q ss_pred EEEeCCCceEEE------eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-cc
Q 012410 327 AVWNFRGELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NA 399 (464)
Q Consensus 327 klWd~~Ge~l~t------l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~g 399 (464)
.+-|.++.-+.. ..-+... ..++++|||+.+..... .+.|++|-.-|..+++-..+- ..
T Consensus 185 ~vi~~~~~~v~~~~~~~~~~~~~~P------~~i~v~~~g~~~yV~~~--------~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 185 SVIDTSGNSVVRGSVGSLVGVGTGP------AGIAVDPDGNRVYVAND--------GSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred EEEeCCCcceeccccccccccCCCC------ceEEECCCCCEEEEEec--------cCCCceEEEEeCCCceEEEecccc
Confidence 999986554442 2222222 46999999997777654 222578989998888877652 11
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC-CcEEe
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVHV 461 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D-gtVrl 461 (464)
-. + .-..++++|+|+.++..... ++|.+
T Consensus 251 ~~---------------------------------~-~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 251 GS---------------------------------G-APRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cc---------------------------------C-CCCceeECCCCCEEEEEecCCCeEEE
Confidence 11 0 22457899999999888544 44443
No 310
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.64 E-value=0.11 Score=56.94 Aligned_cols=269 Identities=14% Similarity=0.177 Sum_probs=152.7
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceE----------EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI----------RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i----------~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++.|++.+.++.+.+.|..||+.+-..+......+ +.+++. +..++..+ .++ + +.--
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t---~dg------~-l~AL 135 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGT---LDA------R-LVAL 135 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEc---CCC------E-EEEE
Confidence 367888888889999999999999988754322112 223332 22333311 222 3 2233
Q ss_pred EeccCCCCCcccceeeccccCc------eEEEEeCCCCcEEEEec-----CCCcEEEEeCCCCeEEEEec---CC-----
Q 012410 167 YIRRGKPDSGFALFESESLKWP------GFVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSIS---DK----- 227 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~------~~VaFs~pdGk~LaSgs-----~D~tiKlWdl~tg~~l~tl~---~~----- 227 (464)
|.++|+.. |+.....+. .+-.. .+|++++..+ .++.|.-.|++||+.+-... ..
T Consensus 136 Da~TGk~~-----W~~~~~~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~ 208 (527)
T TIGR03075 136 DAKTGKVV-----WSKKNGDYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD 208 (527)
T ss_pred ECCCCCEE-----eecccccccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc
Confidence 56777763 332111100 01111 1566655432 36789999999999874432 11
Q ss_pred -------------------------CEeE-EEEe--------------C-C-----Cc----eeEEEEEcCCCcEEEEEe
Q 012410 228 -------------------------HVQE-IKIR--------------S-S-----SH----VPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 228 -------------------------~V~~-Vafs--------------~-s-----~d----~tIklWdi~tG~~l~tl~ 257 (464)
.||. .++- | . .| ..|--.|++||+..-.|+
T Consensus 209 ~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 209 KADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred ccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 1221 1221 1 0 12 257777999999999998
Q ss_pred eCCcceeeEE-------E-EccCCC--eEE-EEeCCCeEEEEECCCCcEEEE--cccCCCce------------------
Q 012410 258 HLLHRNKKVD-------F-IEQFNE--KLL-VKQENENLQILDVRNAELMEV--SRTEFMTP------------------ 306 (464)
Q Consensus 258 ~~~~~~~~V~-------F-~~~~~~--~ll-a~s~D~tIkIWDv~tg~~l~~--l~gh~~~v------------------ 306 (464)
...|-++.-+ + .+.+++ +++ .++.+|.+.+.|-.||+++.. ...+..++
T Consensus 289 ~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~ 368 (527)
T TIGR03075 289 TTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARS 368 (527)
T ss_pred CCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCc
Confidence 5435443322 1 112333 244 478999999999999998721 00000000
Q ss_pred ---------------------EEEEEcCCCcEEEEEe-C---------------------------------CeEEEEeC
Q 012410 307 ---------------------SAFIFLYENQLFLTFR-N---------------------------------RTVAVWNF 331 (464)
Q Consensus 307 ---------------------~sv~FspdgqllaS~s-D---------------------------------~TIklWd~ 331 (464)
...++.|+..++-... + +.|.-||+
T Consensus 369 ~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~ 448 (527)
T TIGR03075 369 ADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDP 448 (527)
T ss_pred CCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeC
Confidence 0145666665553332 3 46788888
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
+|+.+-..+..... .-+. +.-.|.+++.+.. ||.++.+|..||+.|...+-..
T Consensus 449 ~tGk~~W~~~~~~p~-----~~~~-l~t~g~lvf~g~~-----------~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 449 ITGKIVWEHKEDFPL-----WGGV-LATAGDLVFYGTL-----------EGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCCceeeEecCCCCC-----CCcc-eEECCcEEEEECC-----------CCeEEEEECCCCCEeEEEeCCC
Confidence 78887766543322 1122 2235567777765 9999999999999998876543
No 311
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.64 E-value=0.0056 Score=61.48 Aligned_cols=217 Identities=13% Similarity=0.027 Sum_probs=127.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCc---eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~---~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
-.+||...+.|...+|...+++-+..+.-.+.. +++..+-+.. ..+++ +.| ||+++-++.-|-.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~-~~~i~-----snd------ht~k~~~~~~~s~- 150 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF-PLNIA-----SND------HTGKTMVVSGDSN- 150 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccc-ceeec-----cCC------cceeEEEEecCcc-
Confidence 367888889999999987766644433232332 3333333331 12332 566 8999888754432
Q ss_pred CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEE
Q 012410 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLK 254 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~ 254 (464)
.+++|... + -..+++.| +|++.+++-+.-..|-++.+.. ++..-+++.
T Consensus 151 -~~~~h~~~-~-~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~-------------------~sey~~~~~--------- 198 (344)
T KOG4532|consen 151 -KFAVHNQN-L-TQNSLHYS-NDPSWGSSVGDSRRVFRYAIDD-------------------ESEYIENIY--------- 198 (344)
T ss_pred -cceeeccc-c-ceeeeEEc-CCCceEEEecCCCcceEEEeCC-------------------ccceeeeeE---------
Confidence 22333322 1 14588997 8999999877665555444321 111111111
Q ss_pred EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-----EcccCCCceEEEEEcCCCcE---EEEEeCCeE
Q 012410 255 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-----VSRTEFMTPSAFIFLYENQL---FLTFRNRTV 326 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-----~l~gh~~~v~sv~Fspdgql---laS~sD~TI 326 (464)
.......-+.+.|++ .+.+++++..|+++-||||+.-.... +-..|.+.++.+-|+|.|-+ |.|-.=+-+
T Consensus 199 -~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~ 276 (344)
T KOG4532|consen 199 -EAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV 276 (344)
T ss_pred -ecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceE
Confidence 111113347788877 46788889999999999999854332 33468899999999986653 333226678
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
.|-|. ++.-.+... + -..+.|+|..+.|...+.++
T Consensus 277 hv~D~R~~~~~q~I~------i---~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 277 HVVDTRNYVNHQVIV------I---PDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred EEEEcccCceeeEEe------c---CccccccccccccccccccC
Confidence 88897 454322211 1 12345666667666666543
No 312
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.64 E-value=0.00014 Score=46.48 Aligned_cols=39 Identities=13% Similarity=0.328 Sum_probs=35.0
Q ss_pred CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 292 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 292 tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
+++++..+..|...+.++.|.|+++++++++ |++|++||
T Consensus 1 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CcEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3567788888999999999999999999999 99999997
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=3.6e-05 Score=86.25 Aligned_cols=178 Identities=16% Similarity=0.214 Sum_probs=117.4
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------CCcee-EEEEEcC-CCcEEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------SSHVP-LKILSIE-DGTVLKVF 256 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s~d~t-IklWdi~-tG~~l~tl 256 (464)
.++|| .+...|+-|+.-|.||++++.+|.+.-+.. ...|.-|--|- +...| ..||+.. +|...++|
T Consensus 1106 c~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1106 CIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred eEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc
Confidence 68998 788999999999999999999999875443 33343333221 12222 4678874 45555566
Q ss_pred eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE-cccCC--Cc-eEEEEEcCCCcEEEEEeCCeEEEEeCC
Q 012410 257 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEF--MT-PSAFIFLYENQLFLTFRNRTVAVWNFR 332 (464)
Q Consensus 257 ~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-l~gh~--~~-v~sv~FspdgqllaS~sD~TIklWd~~ 332 (464)
.. ...|.|+-. -..-+.|.+-....|||++|+..+.+ |.+-- .. =.-+.|||+..+++- || -|||++
T Consensus 1185 ~e----d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--dG--vLWDvR 1255 (1516)
T KOG1832|consen 1185 DE----DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--DG--VLWDVR 1255 (1516)
T ss_pred cc----cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee--Cc--eeeeec
Confidence 43 367778653 23334455556778999999987766 33321 11 123458888888743 55 589995
Q ss_pred -CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 333 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 333 -Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
-+-++.|..-+.. . .=.|+|.|.-++--|. |||+.|=+.|++...
T Consensus 1256 ~~~aIh~FD~ft~~-----~-~G~FHP~g~eVIINSE----------------IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1256 IPEAIHRFDQFTDY-----G-GGGFHPSGNEVIINSE----------------IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred cHHHHhhhhhheec-----c-cccccCCCceEEeech----------------hhhhHHHHHHhcCcc
Confidence 6667766554432 1 2349999999998765 899998877776543
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.00021 Score=73.45 Aligned_cols=154 Identities=8% Similarity=0.120 Sum_probs=101.4
Q ss_pred EEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC--------CCceeEEEEEcCC-----CcEEEEEeeCCcceeeEEE
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS--------SSHVPLKILSIED-----GTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~--------s~d~tIklWdi~t-----G~~l~tl~~~~~~~~~V~F 268 (464)
++.+.+..|-|=|++||--.+-.+...|.+..|.. -..+.|-..|+.. |.|...|-|. ..+.++.-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~-Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD-SSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC-cchhhhhh
Confidence 45566778888898887654433444565555532 1334555555543 4666666653 34444432
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcE---EEEcccCCCceE--EEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEecc
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPS--AFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~---l~~l~gh~~~v~--sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~g 341 (464)
.-.++++|++++.+++|+|||.+--+| +++..||-+.-. -+-..++...+++++ |---|||.+ +|.++.|+.-
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 221346888889999999999999899 899999965322 233457777777888 999999999 6999998875
Q ss_pred CCCCcCCCCeeEEEEC
Q 012410 342 HLLWHPDCNTNNIYIT 357 (464)
Q Consensus 342 H~~~~~~~~v~svafS 357 (464)
.... ++-.+++++|.
T Consensus 387 ~~s~-~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSA-SEVDIPSVAFD 401 (425)
T ss_pred CCcc-ccccccceehh
Confidence 5442 11125667664
No 315
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.0003 Score=77.60 Aligned_cols=149 Identities=12% Similarity=0.190 Sum_probs=108.0
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCc---------------EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEE
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAE---------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 327 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---------------~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIk 327 (464)
..++|.- ..++|+.|+.||.+|+.-+.|.. .-++|.||...|.-+.|+.+.|.|-|+. +|-|-
T Consensus 18 ~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 18 HCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 3444543 24789999999999998776632 1248899999999999999999998888 99999
Q ss_pred EEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE--EEEccCCCCC
Q 012410 328 VWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL--AKINATNCSP 404 (464)
Q Consensus 328 lWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl--~tl~gh~~~~ 404 (464)
+|-+ .|.-...+....+. ..|.|+.+..||+.|+-... ||.|-+=.+ .|.-+ +.|+|.
T Consensus 97 VWmlykgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYe-----------DGavIVGsv-dGNRIwgKeLkg~---- 157 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMINNRNK---SVVVSMSWNLDGTKICIVYE-----------DGAVIVGSV-DGNRIWGKELKGQ---- 157 (1189)
T ss_pred EEeeecccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEEEc-----------cCCEEEEee-ccceecchhcchh----
Confidence 9998 77654433333332 23889999999999988876 776644332 22211 122222
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
...-|.+|||.+.+.-+-.+|.++|+||
T Consensus 158 --------------------------------~l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 158 --------------------------------LLAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred --------------------------------eccceeecccHHHHHhhhcCCcEEEecc
Confidence 2335789999999999999999999987
No 316
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.46 E-value=0.01 Score=63.69 Aligned_cols=206 Identities=15% Similarity=0.193 Sum_probs=110.6
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEee
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~ 258 (464)
-.|..+.++ |+|+.++- ..|+.|-|.......-.... .-.+.+|.++ ...+|+|..--+.+..++++-
T Consensus 33 ~~p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~G---~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAFG---SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEEE---E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred cCCeeEEEC-CCCCEEEE-EcCCEEEEEEccCCcccccC---ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence 346689997 89999887 55788888874332222221 2234555442 244566642212222223321
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCc----
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE---- 334 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge---- 334 (464)
. ..+..+ ++|.+|.-..++.|.+||+++++.+....-. .|..|.||++|+++|=.++.+|-|.+.+-+
T Consensus 108 ~-~~~~~I-----f~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 108 P-FSVEKI-----FGGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA 179 (443)
T ss_dssp S-S-EEEE-----E-SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH
T ss_pred C-cccceE-----EcCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhccc
Confidence 1 122333 2366666555559999999999999887743 378999999999999999778999998655
Q ss_pred --------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEccCCCCC
Q 012410 335 --------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSP 404 (464)
Q Consensus 335 --------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gh~~~~ 404 (464)
.+..+..-... |.+.+|--| ++-++. -.-||- +..|++ ++++ ..
T Consensus 180 ~~~~g~e~~f~~~~E~~~~-----IkSg~W~~d---~fiYtT-----------~~~lkY--l~~Ge~~~i~~l---d~-- 233 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISER-----IKSGCWVED---CFIYTT-----------SNHLKY--LVNGETGIIAHL---DK-- 233 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S-------SEEEEETT---EEEEE------------TTEEEE--EETTEEEEEEE----SS--
T ss_pred ccccCchhceEEEEEecce-----eEEEEEEcC---EEEEEc-----------CCeEEE--EEcCCcceEEEc---CC--
Confidence 55555442222 678888665 223433 335665 345554 2222 21
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.+.=+.+.|+.+.|+....|+.|...
T Consensus 234 --------------------------------~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 234 --------------------------------PLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp ----------------------------------EEEEEETTTTEEEEE-TT--EEEE
T ss_pred --------------------------------ceEEEEEEccCCEEEEEECCCCEEEE
Confidence 66778899988999999999888754
No 317
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.36 E-value=0.00083 Score=66.98 Aligned_cols=154 Identities=13% Similarity=0.097 Sum_probs=96.7
Q ss_pred CeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeCC-Cc-eEEEeccCCCCcCCCCeeEEEECC
Q 012410 283 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITS 358 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~~-Ge-~l~tl~gH~~~~~~~~v~svafSp 358 (464)
+..++|+++.-+.+....---..|.+++-.|.. +++++|+ ||.|-|||.+ +. .+..|..|... +|-|-|+|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-----i~eV~FHp 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-----IWEVHFHP 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----hhheeccC
Confidence 356678776554333222122347777767654 4566677 9999999994 43 45578899887 88999999
Q ss_pred -CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccC
Q 012410 359 -DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 437 (464)
Q Consensus 359 -Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 437 (464)
++..|..+|+ ||++-.||. +++-|. + +.+.++...=.+.+ -..+..++-+..++-...
T Consensus 234 k~p~~Lft~se-----------dGslw~wda-s~~~l~-i-~~~~s~~s~WLsgD-------~v~s~i~i~~ll~~~~~S 292 (319)
T KOG4714|consen 234 KNPEHLFTCSE-----------DGSLWHWDA-STTFLS-I-SNQASVISSWLSGD-------PVKSRIEITSLLPSRSLS 292 (319)
T ss_pred CCchheeEecC-----------CCcEEEEcC-CCceEE-e-cCccccccccccCC-------cccceEeeecccccccee
Confidence 7888888875 999999995 556555 2 12211110000000 001123334444444445
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 438 ITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 438 V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|. .|+--|.+|++|+.-+.|.|.++
T Consensus 293 in--sfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 293 IN--SFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred ee--eeeccCceEEeccccceEEEecc
Confidence 55 46667999999999999998764
No 318
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.35 E-value=0.059 Score=57.65 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=77.3
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEE--EEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQ--ILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIk--IWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
..+.++|+++|+.-+.++.. ......+|+|+ +.+++.+ ..|+... +.|+.+++..+ |..-...-..=.|||||+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspD-G~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFN-GNNGAPAFSPD-GSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccC-CccCCccCCCC-CCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCC
Confidence 35889999999887777632 45577889994 6677665 4666555 56888888555 322211112334899999
Q ss_pred EEEEEe--CCeEEEE--eCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 317 LFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 317 llaS~s--D~TIklW--d~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
.++=.+ .|.-.|| |.+|.-++.+.-+... -..-.+||||++|+.-+
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~-----~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG-----NSNPVWSPDGDKIVFES 344 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCceeEeeccCCC-----CcCccCCCCCCEEEEEe
Confidence 988777 4444555 5566655544433322 01345799999999876
No 319
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.066 Score=57.32 Aligned_cols=206 Identities=10% Similarity=0.093 Sum_probs=121.4
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
..++=| .+|.....+.. ....+..-.++|+++.++-++-+.... -.+.++++.+|+... ..+ ..++.
T Consensus 174 ~l~~~D-~dg~~~~~l~~-~~~~~~~p~ws~~~~~~~y~~f~~~~~------~~i~~~~l~~g~~~~---i~~--~~g~~ 240 (425)
T COG0823 174 ELALGD-YDGYNQQKLTD-SGSLILTPAWSPDGKKLAYVSFELGGC------PRIYYLDLNTGKRPV---ILN--FNGNN 240 (425)
T ss_pred eEEEEc-cCCcceeEecc-cCcceeccccCcCCCceEEEEEecCCC------ceEEEEeccCCccce---eec--cCCcc
Confidence 344434 34777888855 456689999999999998876443321 468888988888632 222 22444
Q ss_pred eEEEEeCCCCcEEEEecC-CCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 189 GFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
..-+|| |||+.||.++. |+..-|| +.|+.+++ +..|++.........
T Consensus 241 ~~P~fs-pDG~~l~f~~~rdg~~~iy------------------------------~~dl~~~~-~~~Lt~~~gi~~~Ps 288 (425)
T COG0823 241 GAPAFS-PDGSKLAFSSSRDGSPDIY------------------------------LMDLDGKN-LPRLTNGFGINTSPS 288 (425)
T ss_pred CCccCC-CCCCEEEEEECCCCCccEE------------------------------EEcCCCCc-ceecccCCccccCcc
Confidence 467787 99999986643 4433332 23333333 222443223334566
Q ss_pred EEccCCCeEEEEe-CCCe--EEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEe--CCe--EEEEeC-CCceEEE
Q 012410 268 FIEQFNEKLLVKQ-ENEN--LQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNF-RGELVTS 338 (464)
Q Consensus 268 F~~~~~~~lla~s-~D~t--IkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~s--D~T--IklWd~-~Ge~l~t 338 (464)
|+| +|.+|+..+ ..|. |-+.|+..++..+ ++.+-... .-.+||||+.|+--+ ++- |-+-|. +|.-++.
T Consensus 289 ~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~ 365 (425)
T COG0823 289 WSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI 365 (425)
T ss_pred CCC-CCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence 777 466666644 4444 4455766666544 33332222 344899999999877 444 555555 3443554
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
|..-.. ...-.+.|||..|+..+.
T Consensus 366 lt~~~~------~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 366 LTSTYL------NESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cccccc------CCCCCcCCCCceEEEecc
Confidence 543322 234567899999987654
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.0003 Score=79.11 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=91.9
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC-eEEEEeC--CCceE
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR-TVAVWNF--RGELV 336 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~-TIklWd~--~Ge~l 336 (464)
.-.+++|+-. .+.|++|+..|.||++++.+|.-......|...|+-+-=|-||.++++++ .+ -..||+. .|...
T Consensus 1103 ~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1103 LFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred ceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcc
Confidence 3478899874 57888899999999999999999999999999888888888999888876 44 6899998 48888
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-Ecc
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INA 399 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~g 399 (464)
++|.+.. .|-||..-+.-|-|+. ...+-|+|++|+.-+.| |.+
T Consensus 1182 Hsf~ed~---------~vkFsn~~q~r~~gt~-----------~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1182 HSFDEDK---------AVKFSNSLQFRALGTE-----------ADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred ccccccc---------eeehhhhHHHHHhccc-----------ccceEEEecccCcHHHHhcCc
Confidence 8887543 4667765554444554 34578999999987776 443
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.21 E-value=0.0048 Score=70.01 Aligned_cols=179 Identities=14% Similarity=0.164 Sum_probs=117.1
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCC
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~ 350 (464)
++.++.|+.-+.|--.|+.+++..++..-.. .-..+.-.+++.|.+|. .|||-|-|. +-+.+++|..|++.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a--~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si---- 220 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSA--SGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI---- 220 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccC--CceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccce----
Confidence 3567778755566677988888777644332 22455678999999999 999999999 589999999999873
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC------CCC----cccccCCCC-C-Ccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC------SPK----VDDELGSSS-T-GKS 418 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~------~~~----~~~~~~~~~-~-~~~ 418 (464)
..|.-.|++|++++.|- -+.-.--|.-||+||+.+=+.|.-++=|-+ +|. ..+++.+|+ + +-+
T Consensus 221 ---SDfDv~GNlLitCG~S~--R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 221 ---SDFDVQGNLLITCGYSM--RRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred ---eeeeccCCeEEEeeccc--ccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccc
Confidence 45777899999998731 111122478899999977666665544433 222 113344443 1 000
Q ss_pred cccccc-ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 419 KKLNKS-SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 419 ~~~~~~-~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
....|. ..+-...+. -..+.+..+|+.|+-||-|..+|-|++|-
T Consensus 296 ~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 001110 011110010 01488999999999999999999999994
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.19 E-value=0.0046 Score=67.27 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=90.5
Q ss_pred eEEEEEcCCCcEEEEEee--CCcceeeEEEEccCCCeEEE-E---eCCCeEE----EEECCCCcEEE---EcccCCCceE
Q 012410 241 PLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLV-K---QENENLQ----ILDVRNAELME---VSRTEFMTPS 307 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~~~lla-~---s~D~tIk----IWDv~tg~~l~---~l~gh~~~v~ 307 (464)
.+-|..+..+ -+..|.. .-..--.+.|+--.+.++.+ - +.+|.+. +|++..++... +.......|.
T Consensus 185 Nl~L~~~~~~-klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGG-KLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCC-cEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 4666666533 3333321 00222677777644455554 1 2444433 67877665433 2234556789
Q ss_pred EEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 308 AFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 308 sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
+++++|+...|+-|+ ||+|.|||.+-+ ++++..+.-- ..-++++|||.+++.|+. -|-+.+|
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t~~~ka~~~-----P~~iaWHp~gai~~V~s~-----------qGelQ~F 326 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRG-VTLLAKAEFI-----PTLIAWHPDGAIFVVGSE-----------QGELQCF 326 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCC-eeeeeeeccc-----ceEEEEcCCCcEEEEEcC-----------CceEEEE
Confidence 999999999999999 999999998422 3444444322 568999999999999986 7999999
Q ss_pred eCCCCeEEEEE
Q 012410 387 SILTGKCLAKI 397 (464)
Q Consensus 387 di~tG~cl~tl 397 (464)
|+.-.-+--.+
T Consensus 327 D~ALspi~~qL 337 (545)
T PF11768_consen 327 DMALSPIKMQL 337 (545)
T ss_pred EeecCccceee
Confidence 98765544333
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.16 E-value=0.0013 Score=71.38 Aligned_cols=128 Identities=18% Similarity=0.227 Sum_probs=83.3
Q ss_pred CeEEEEECCCCc--EEEEcccCCCceEEEEEcC-CCcEEEE----Ee-CCe--E--EEEeC-CCce----EEEeccCCCC
Q 012410 283 ENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY-ENQLFLT----FR-NRT--V--AVWNF-RGEL----VTSFEDHLLW 345 (464)
Q Consensus 283 ~tIkIWDv~tg~--~l~~l~gh~~~v~sv~Fsp-dgqllaS----~s-D~T--I--klWd~-~Ge~----l~tl~gH~~~ 345 (464)
-++.|+-+..++ .+-..+++.+ |..+.||- +...+-| .+ ++. | -++++ ++++ ++++. ....
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~d-Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsip-L~s~ 261 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTEND-PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIP-LPSQ 261 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCC-cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEe-cCCc
Confidence 356666654442 3334455544 46677883 4444444 23 442 2 35666 3442 22332 2222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
|.+++++|+.+.|+-||. ||+|.|||..++-- ++.-+.-
T Consensus 262 -----v~~ca~sp~E~kLvlGC~-----------DgSiiLyD~~~~~t--~~~ka~~----------------------- 300 (545)
T PF11768_consen 262 -----VICCARSPSEDKLVLGCE-----------DGSIILYDTTRGVT--LLAKAEF----------------------- 300 (545)
T ss_pred -----ceEEecCcccceEEEEec-----------CCeEEEEEcCCCee--eeeeecc-----------------------
Confidence 789999999999999997 99999999866532 2211111
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..+-++|+|||..++.||+-|.+.+||+
T Consensus 301 -----------~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 301 -----------IPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred -----------cceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4567999999999999999999999995
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.99 E-value=0.59 Score=48.73 Aligned_cols=260 Identities=12% Similarity=0.144 Sum_probs=149.0
Q ss_pred CCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC----------CCcEEEEeCCCCeEEEE
Q 012410 154 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYS 223 (464)
Q Consensus 154 dfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~----------D~tiKlWdl~tg~~l~t 223 (464)
.|+++.+ .+.+-|-..|+..+ .... +..+-+..| |||+.+..++. .--|-+||.+|-+....
T Consensus 11 ~~~~~~~-rv~viD~d~~k~lG----mi~~--g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E 82 (342)
T PF06433_consen 11 VFFHMTS-RVYVIDADSGKLLG----MIDT--GFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE 82 (342)
T ss_dssp GGGGSSE-EEEEEETTTTEEEE----EEEE--ESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE
T ss_pred ccccccc-eEEEEECCCCcEEE----Eeec--ccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce
Confidence 3677774 67788877777643 2211 333357787 89999987654 44799999999877653
Q ss_pred --ecCC-CEe------EEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCe
Q 012410 224 --ISDK-HVQ------EIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN 284 (464)
Q Consensus 224 --l~~~-~V~------~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~t 284 (464)
|+.+ ..+ ..++|++ --..|-|-|++.++.+..+.- ...+-|- |..+..+.+-+.||.
T Consensus 83 I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iy--P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 83 IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIY--PSGNRGFSMLCGDGS 158 (342)
T ss_dssp EEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEE--EEETTEEEEEETTSC
T ss_pred EecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEE--ecCCCceEEEecCCc
Confidence 3332 222 2233332 224688899999999988863 2223332 322455666678888
Q ss_pred EEEEECC-CCcEEEE----cccCCCceE-EEEEcCCC-cEEEEEe-CCeEEEEeCCCceEE---Eec------cCCCCcC
Q 012410 285 LQILDVR-NAELMEV----SRTEFMTPS-AFIFLYEN-QLFLTFR-NRTVAVWNFRGELVT---SFE------DHLLWHP 347 (464)
Q Consensus 285 IkIWDv~-tg~~l~~----l~gh~~~v~-sv~Fspdg-qllaS~s-D~TIklWd~~Ge~l~---tl~------gH~~~~~ 347 (464)
+.-..+. .|+..+. +....+.+. .-+++..+ +++- -+ +|.|.-=|+.|+-.. .++ .-..|.|
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence 8877666 5765432 222212111 11233333 3333 34 677766676554322 221 2235655
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
.- -.-+++++..+.|..-=....+..- ......|-++|+.|+|.++.|.--.
T Consensus 238 GG-~Q~~A~~~~~~rlyvLMh~g~~gsH-KdpgteVWv~D~~t~krv~Ri~l~~-------------------------- 289 (342)
T PF06433_consen 238 GG-WQLIAYHAASGRLYVLMHQGGEGSH-KDPGTEVWVYDLKTHKRVARIPLEH-------------------------- 289 (342)
T ss_dssp -S-SS-EEEETTTTEEEEEEEE--TT-T-TS-EEEEEEEETTTTEEEEEEEEEE--------------------------
T ss_pred cc-eeeeeeccccCeEEEEecCCCCCCc-cCCceEEEEEECCCCeEEEEEeCCC--------------------------
Confidence 43 2458888877666543221000000 0012457888999999999996422
Q ss_pred cccccccccCEEEEEEcCCCC-EEEEee-CCCcEEecc
Q 012410 428 RSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 463 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~-~LaSgs-~DgtVrlWd 463 (464)
.+.||+.+.|.+ .|+..+ .++++.++|
T Consensus 290 ---------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 290 ---------PIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp ---------EESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ---------ccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 577999999998 666655 579999987
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.95 E-value=0.34 Score=52.45 Aligned_cols=226 Identities=11% Similarity=0.085 Sum_probs=123.9
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCc-----eEEEEEEeeCCCEEEEEEeecCCCCcc-cceeeEEEEEeccCC
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDE-----VIRSLFYNKNNDSLITVSVYASDNFSS-LKCRSTKIEYIRRGK 172 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~-----~i~Sv~fs~~g~~l~svSa~~sddfs~-L~~~ti~l~~i~~G~ 172 (464)
+.|...+.+|.+.++|..||+.+-..+..... ..-+..+.. ..++..+ ...++.. -....+.--|..+|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~--~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGS--SGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEec--cccccccCCCCcEEEEEECCCCc
Confidence 78888889999999999999999887553321 111222221 3343322 1111110 001344444667777
Q ss_pred CCCcccceeeccc--------c---------C--c---eEEEEeCCCCcEEEEecCCC------------------cEEE
Q 012410 173 PDSGFALFESESL--------K---------W--P---GFVEFDDVNGKVLTYSAQDS------------------IYKV 212 (464)
Q Consensus 173 ~~~~~~l~~~~~~--------~---------~--~---~~VaFs~pdGk~LaSgs~D~------------------tiKl 212 (464)
. +|..+.. . + + .+.+++ +.+.++..++.|+ ++--
T Consensus 187 ~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~A 260 (488)
T cd00216 187 L-----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVA 260 (488)
T ss_pred e-----eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEE
Confidence 5 2221100 0 0 0 034564 3333444455443 6888
Q ss_pred EeCCCCeEEEEec--CCCE-----------e----------EEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 213 FDLKNYTMLYSIS--DKHV-----------Q----------EIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 213 Wdl~tg~~l~tl~--~~~V-----------~----------~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
.|++||+.+-... ...+ . .+.+-+..++.+.-.|.+||+.+...+.. ...++..
T Consensus 261 ld~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~ 337 (488)
T cd00216 261 LDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYD 337 (488)
T ss_pred EcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccC
Confidence 8999999986543 1111 1 12344456788999999999999876521 0112221
Q ss_pred ccCCCeEEEE------------------eCCCeEEEEECCCCcEEEEcccC--C------CceEEEEEcCCCcEEEEEe-
Q 012410 270 EQFNEKLLVK------------------QENENLQILDVRNAELMEVSRTE--F------MTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 270 ~~~~~~lla~------------------s~D~tIkIWDv~tg~~l~~l~gh--~------~~v~sv~FspdgqllaS~s- 322 (464)
| +.+.+. ..++.|.-.|+.+|+.+=..... . .....-.....+.++..++
T Consensus 338 ~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~ 414 (488)
T cd00216 338 P---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA 414 (488)
T ss_pred C---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECC
Confidence 2 333332 24678888899999876433211 0 0000000112456666667
Q ss_pred CCeEEEEeC-CCceEEEec
Q 012410 323 NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~ 340 (464)
|+.|...|. +|+.+-+++
T Consensus 415 dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 415 DGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCeEEEEECCCCceeeEEE
Confidence 999999999 799988765
No 326
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.93 E-value=0.075 Score=53.67 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=54.8
Q ss_pred CCeEEEEeCCCeEEEEECCC------CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCC-
Q 012410 273 NEKLLVKQENENLQILDVRN------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL- 344 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~t------g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~- 344 (464)
+|++||-=.|..|.|=-.+. |+| ++.+.-+-.=+-++||||+.+||.+. .|+|++.|+.|..+..+..-..
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kc-qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKC-QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF 86 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEE-ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence 45565555555555533222 344 45554444556799999999999999 9999999998887776654322
Q ss_pred -CcCCCCeeEEEECCC
Q 012410 345 -WHPDCNTNNIYITSD 359 (464)
Q Consensus 345 -~~~~~~v~svafSpD 359 (464)
....+.|-.+.|-+-
T Consensus 87 ~~d~~~Aiagl~Fl~~ 102 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEY 102 (282)
T ss_pred CCccccceeeeEeecc
Confidence 122234566666553
No 327
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.084 Score=59.55 Aligned_cols=226 Identities=13% Similarity=0.183 Sum_probs=144.8
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------------------CCceeEEEEEc
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------------------SSHVPLKILSI 247 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------------------s~d~tIklWdi 247 (464)
++.++ |.| .+|+|+.. .|-|=|..+++.+.++. ...|..|.+.| +-.+-|-|||.
T Consensus 20 A~Dw~-~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 20 AADWS-PSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccC-ccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 67786 677 89999876 57788999999998876 56799999954 23468999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCC---CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEE-EEEe
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLF-LTFR 322 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~---~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqll-aS~s 322 (464)
..+..+..|+++...+-.+.|.+--+ ..||+=..-.+|-|||..||+.+--..--......+.|-| |.+-| +.++
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc
Confidence 99999999998777777777765422 3455545668999999999997643222223344455554 22222 2233
Q ss_pred CCeEEEEeC--------CCceEEEeccCCCC------------cCCCCe--------eEEEECCCCC--EEEEEecCCCc
Q 012410 323 NRTVAVWNF--------RGELVTSFEDHLLW------------HPDCNT--------NNIYITSDQD--LIISYCKAEPE 372 (464)
Q Consensus 323 D~TIklWd~--------~Ge~l~tl~gH~~~------------~~~~~v--------~svafSpDg~--~LaSgs~~~~~ 372 (464)
.|-+-+-++ -|+..+.-.+|... +.-|+- --.+|+|.-+ +++..
T Consensus 177 ~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~------ 250 (1062)
T KOG1912|consen 177 KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF------ 250 (1062)
T ss_pred CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe------
Confidence 555555542 25666655565540 000100 1234566533 23332
Q ss_pred cccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 012410 373 DQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS 452 (464)
-.-+-|.|++=.+|+.++.--.+ .. ..-.+-=.|...-|++
T Consensus 251 -------prellv~dle~~~~l~vvpier~-----------~a---------------------kfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 251 -------PRELLVFDLEYECCLAVVPIERG-----------GA---------------------KFVDVLPDPRRDALFC 291 (1062)
T ss_pred -------ccceEEEcchhhceeEEEEeccC-----------Cc---------------------ceeEeccCCCcceEEE
Confidence 35688999999999988743322 00 3333444455567999
Q ss_pred eeCCCcEEecc
Q 012410 453 GNRHGLVHVWS 463 (464)
Q Consensus 453 gs~DgtVrlWd 463 (464)
+-.||-+.+|-
T Consensus 292 lH~nG~ltirv 302 (1062)
T KOG1912|consen 292 LHSNGRLTIRV 302 (1062)
T ss_pred EecCCeEEEEE
Confidence 99999999883
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.02 Score=64.75 Aligned_cols=224 Identities=14% Similarity=0.219 Sum_probs=139.1
Q ss_pred CCEeEEE-EeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCC
Q 012410 227 KHVQEIK-IRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFM 304 (464)
Q Consensus 227 ~~V~~Va-fs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~ 304 (464)
++...|| |||..-+.|.|+ .+||+.....+.. -++.+++|.|- +.+|+.+ +-+.+-+|...+.+--.+..+|..
T Consensus 27 ePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a 102 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETHTVVETHPA 102 (1416)
T ss_pred CceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChH--HHHHhhccccceeEEEecCCceeeeeccCCCC
Confidence 4455555 588777778777 4679977655432 23477889884 5566644 889999999888888888889999
Q ss_pred ceEEEEEcCCCcEEEEEe-CCeEEEEeCC--CceEE------EeccCCCCcCCCCeeEEEECCCCC-------EEEEEec
Q 012410 305 TPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVT------SFEDHLLWHPDCNTNNIYITSDQD-------LIISYCK 368 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D~TIklWd~~--Ge~l~------tl~gH~~~~~~~~v~svafSpDg~-------~LaSgs~ 368 (464)
.+..+.|||+|..++|+. =|.|.+|-.. |+... .|.+|.. .|.--.+||+. .-++|.+
T Consensus 103 ~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt------l~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 103 PIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT------LWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred CceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceee------EEEEecCCChHHhhhhhhhhccCch
Confidence 999999999999999999 8999999864 77532 2223322 23344455521 1112211
Q ss_pred CCCccc-----------------------cccCCCCeEEEEeCCCCeEEEEEccCCC-----------------------
Q 012410 369 AEPEDQ-----------------------WMEGSAGSINVSSILTGKCLAKINATNC----------------------- 402 (464)
Q Consensus 369 ~~~~~~-----------------------~~~s~DgtIklWdi~tG~cl~tl~gh~~----------------------- 402 (464)
+.-|.. .+++-+|||.--| +.|+|....+..+.
T Consensus 177 ~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l 255 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCL 255 (1416)
T ss_pred hhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeE
Confidence 111100 3334478888877 68888776655442
Q ss_pred ---CCCcccccCC-----CC------CCcccccccccccccccc---ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 403 ---SPKVDDELGS-----SS------TGKSKKLNKSSYIRSTVG---EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 403 ---~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~---~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|.++.-.++ |. .+|.+-... -++.+.. +.=+.+.+++|+.-+.+|+.|-..|.|.+|-
T Consensus 256 ~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG--vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 256 IFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG--VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred EEecCCCchHHhhhhhhccccCCccCccccccccc--cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 1111110000 00 111111111 1112222 2233899999999999999999999999994
No 329
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.013 Score=65.22 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=97.2
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccc--------eeeccccCce---EEEEeCCC
Q 012410 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL--------FESESLKWPG---FVEFDDVN 197 (464)
Q Consensus 129 ~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l--------~~~~~~~~~~---~VaFs~pd 197 (464)
+-...++.+|++..++|..+ .| +..++--+.+.-.+....+ .....-||.+ -|.++ .+
T Consensus 14 nvkL~c~~WNke~gyIAcgG----~d------GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~ 82 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGG----AD------GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-EN 82 (1189)
T ss_pred CceEEEEEEcccCCeEEecc----cc------ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cc
Confidence 34578889999988998844 33 3444433322222211111 0001224444 47887 58
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEecCC----CEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK----HVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~----~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
.|.|+++..+|-|.||=+..|+-.-....+ -|.++. |+.+ |+.+- +.+ + +
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sms-----------Wn~d-G~kIc-----------IvY-e--D 136 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMS-----------WNLD-GTKIC-----------IVY-E--D 136 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEE-----------EcCC-CcEEE-----------EEE-c--c
Confidence 889999999999999998887643222212 233333 4443 53322 222 2 3
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCce
Q 012410 274 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL 335 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~ 335 (464)
|-+++|+-||+ |||. .++.-++-. -+.+|||.++++-+- +|.+.|+|-+|..
T Consensus 137 GavIVGsvdGN-RIwg---KeLkg~~l~------hv~ws~D~~~~Lf~~ange~hlydnqgnF 189 (1189)
T KOG2041|consen 137 GAVIVGSVDGN-RIWG---KELKGQLLA------HVLWSEDLEQALFKKANGETHLYDNQGNF 189 (1189)
T ss_pred CCEEEEeeccc-eecc---hhcchhecc------ceeecccHHHHHhhhcCCcEEEecccccH
Confidence 78888998887 7886 222222222 367999999988888 9999999977763
No 330
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.83 E-value=0.55 Score=45.87 Aligned_cols=239 Identities=17% Similarity=0.213 Sum_probs=132.1
Q ss_pred EeccceeehhccCCeEEeeeccc-ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC
Q 012410 95 VAARDIVFALAHSGVCAAFSRET-NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (464)
Q Consensus 95 ~~ag~~l~~l~~~g~~~~~~~~~-g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~ 173 (464)
...++.|+.+.++| +-+++..+ .+....+...+ |..+..-|+=+.|++.+ | +++.+.++..-..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~---I~ql~vl~~~~~llvLs----d-------~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS---ITQLSVLPELNLLLVLS----D-------GQLYVYDLDSLEP 68 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecce---EEEEEEecccCEEEEEc----C-------CccEEEEchhhcc
Confidence 34588899999999 66776533 33333332222 88999888888888854 2 4677766644333
Q ss_pred CCccc-ce---------eeccccCceEEE--EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCcee
Q 012410 174 DSGFA-LF---------ESESLKWPGFVE--FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVP 241 (464)
Q Consensus 174 ~~~~~-l~---------~~~~~~~~~~Va--Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~t 241 (464)
..... .. .....++..+++ =....+..|+ .+..++|.||......
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~---------------------- 125 (275)
T PF00780_consen 69 VSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPR---------------------- 125 (275)
T ss_pred ccccccccccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCc----------------------
Confidence 22100 00 000011111221 0011222333 2333345554432210
Q ss_pred EEEEEcCCC-cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-----------CceEEE
Q 012410 242 LKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-----------MTPSAF 309 (464)
Q Consensus 242 IklWdi~tG-~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-----------~~v~sv 309 (464)
... +.++.+.-. .....++|.. ..++++..+ ...+.|+.+++....+.... ..+..+
T Consensus 126 ------~~f~~~~ke~~lp-~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 194 (275)
T PF00780_consen 126 ------NSFSKLLKEISLP-DPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGI 194 (275)
T ss_pred ------ccccceeEEEEcC-CCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEE
Confidence 001 334444422 5567788863 677777654 47788999888776653221 123444
Q ss_pred EEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 310 IFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 310 ~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
.-.+++.+|++.. ..--.=|..|+..+ .+...|.. ...++++. ..+|+.-+ ++.|-||++.
T Consensus 195 ~~~~~~e~Ll~~~-~~g~fv~~~G~~~r--~~~i~W~~--~p~~~~~~--~pyli~~~------------~~~iEV~~~~ 255 (275)
T PF00780_consen 195 FQLSDNEFLLCYD-NIGVFVNKNGEPSR--KSTIQWSS--APQSVAYS--SPYLIAFS------------SNSIEVRSLE 255 (275)
T ss_pred EEeCCceEEEEec-ceEEEEcCCCCcCc--ccEEEcCC--chhEEEEE--CCEEEEEC------------CCEEEEEECc
Confidence 4456678887654 44445577898766 44444532 24466663 34777654 5779999999
Q ss_pred CCeEEEEEccCC
Q 012410 390 TGKCLAKINATN 401 (464)
Q Consensus 390 tG~cl~tl~gh~ 401 (464)
+|++++++.+..
T Consensus 256 ~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 256 TGELVQTIPLPN 267 (275)
T ss_pred CCcEEEEEECCC
Confidence 999999998764
No 331
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.81 E-value=0.74 Score=47.45 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=120.9
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCC------CCe-EEEEecC-------CCEeEEEEeC-------------
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYT-MLYSISD-------KHVQEIKIRS------------- 236 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~------tg~-~l~tl~~-------~~V~~Vafs~------------- 236 (464)
.+.-+..|+|+ |.|..-++...-++..|+|.. ..+ ++-+++. .....|+|+.
T Consensus 21 ~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 21 GLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 44556689997 899999999889999999986 232 3345551 2456777753
Q ss_pred -------CCceeEEEEEcCCCcEE---E--EEee-CCcce-eeEEEEccC-CCeEEEEe-CCCeEEEEECCCCcEEEEcc
Q 012410 237 -------SSHVPLKILSIEDGTVL---K--VFYH-LLHRN-KKVDFIEQF-NEKLLVKQ-ENENLQILDVRNAELMEVSR 300 (464)
Q Consensus 237 -------s~d~tIklWdi~tG~~l---~--tl~~-~~~~~-~~V~F~~~~-~~~lla~s-~D~tIkIWDv~tg~~l~~l~ 300 (464)
++|+||.=|.-.-+... . .+.. ....+ +.+++-.-. +.+|.++- ..++|.++| .+-+.+.+ .
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd-~~f~~~~~-~ 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK-GSFRPPPL-P 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec-CccccccC-C
Confidence 25566666654322221 1 1111 11223 455544311 24454443 677888887 44444432 1
Q ss_pred cCC-Cc-------eEEEEEcCCCcEEEEEe--------------CCeEEEEeCCCceEEEec--cCCCCcCCCCeeEEEE
Q 012410 301 TEF-MT-------PSAFIFLYENQLFLTFR--------------NRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYI 356 (464)
Q Consensus 301 gh~-~~-------v~sv~FspdgqllaS~s--------------D~TIklWd~~Ge~l~tl~--gH~~~~~~~~v~svaf 356 (464)
+-+ +. |.-+ -.=.++++++-- -+-|-+.|.+|++++.|. +..+- =|.|+.
T Consensus 178 g~F~DP~iPagyAPFnI-qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNa-----PWG~a~ 251 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNV-QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNA-----PWGLAI 251 (336)
T ss_pred CCccCCCCCCCCCCcce-EEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccC-----Cceeee
Confidence 211 11 1111 112455666532 368999999999999984 33332 368888
Q ss_pred CC------CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 357 TS------DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 357 Sp------Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
.| .|++|+.--- ||+|+.+|..+|+-+-.|+.-++
T Consensus 252 APa~FG~~sg~lLVGNFG-----------DG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 252 APESFGSLSGALLVGNFG-----------DGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred ChhhhCCCCCCeEEeecC-----------CceeEEecCCCCceeeeecCCCC
Confidence 65 6888886432 99999999999999999987654
No 332
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.78 E-value=0.011 Score=59.09 Aligned_cols=86 Identities=8% Similarity=0.082 Sum_probs=63.4
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE-EEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCCCceEE
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVT 337 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l-~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~Ge~l~ 337 (464)
..+..++-.|-.+..++.|++||.+-|||+++.... .++..|...++.|-|.| ++.-|.+++ ||.+--||..|+.+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence 346666666643345555889999999999998543 36789999999999996 566788888 999999998776654
Q ss_pred ---EeccCCCCc
Q 012410 338 ---SFEDHLLWH 346 (464)
Q Consensus 338 ---tl~gH~~~~ 346 (464)
.-.+|+.|-
T Consensus 260 i~~~~s~~s~WL 271 (319)
T KOG4714|consen 260 ISNQASVISSWL 271 (319)
T ss_pred ecCccccccccc
Confidence 123555553
No 333
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.78 E-value=0.5 Score=50.05 Aligned_cols=248 Identities=15% Similarity=0.160 Sum_probs=112.6
Q ss_pred cceeehhccCCeEEeee--cccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC
Q 012410 98 RDIVFALAHSGVCAAFS--RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~--~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~ 175 (464)
..+|+....+|-.++|- ..+++ +..|..+..+.....+.+|++..++=+. ++ +++.-=++++++..
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~------~~l~~vdL~T~e~~- 115 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGE-ITQLTDGPGDNTFGGFLSPDDRALYYVK----NG------RSLRRVDLDTLEER- 115 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-E-EEE---SS-B-TTT-EE-TTSSEEEEEE----TT------TEEEEEETTT--EE-
T ss_pred CEEEEEeccCCCcceEEEEcccCE-EEECccCCCCCccceEEecCCCeEEEEE----CC------CeEEEEECCcCcEE-
Confidence 47888888899888875 33444 4444443333334677788877764422 22 34444466665531
Q ss_pred cccceeeccccCceEEEEe-CCCCcEEEEecC----------------------CCcEEEEeCCCCeEEEEec-CCCEeE
Q 012410 176 GFALFESESLKWPGFVEFD-DVNGKVLTYSAQ----------------------DSIYKVFDLKNYTMLYSIS-DKHVQE 231 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs-~pdGk~LaSgs~----------------------D~tiKlWdl~tg~~l~tl~-~~~V~~ 231 (464)
.+++- .-.|.+...+. +.|+..++-.-. ...|.-=|++||+.-..+. ..|+--
T Consensus 116 --~vy~~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 116 --VVYEV-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp --EEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred --EEEEC-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 23331 12344434442 346766653211 2233344888888655555 578888
Q ss_pred EEEeCCCc-------------eeEEEEEcC-CCcEEEEEeeC-Ccce-eeEEEEccCCCeEEE-E----eCCCeEEEEEC
Q 012410 232 IKIRSSSH-------------VPLKILSIE-DGTVLKVFYHL-LHRN-KKVDFIEQFNEKLLV-K----QENENLQILDV 290 (464)
Q Consensus 232 Vafs~s~d-------------~tIklWdi~-tG~~l~tl~~~-~~~~-~~V~F~~~~~~~lla-~----s~D~tIkIWDv 290 (464)
+-|||... ..-|||-+. +|.-.+.+..+ -... --=-|.+ +|..|.- + +.+..|.=.|+
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEEE-T
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEEeeCC
Confidence 99998422 133677654 46555554311 0111 1112444 4555543 2 35667888899
Q ss_pred CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC----------------eEEEEeCCCceEEEeccCC----------
Q 012410 291 RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR----------------TVAVWNFRGELVTSFEDHL---------- 343 (464)
Q Consensus 291 ~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~----------------TIklWd~~Ge~l~tl~gH~---------- 343 (464)
.|++-...... .+..-+--++||+++|-=+ |. -|.|+++...-...|..|.
T Consensus 272 ~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 272 DTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDR 349 (386)
T ss_dssp TT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBS
T ss_pred CCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCC
Confidence 99876543221 1233344569999998744 53 4556777433223333332
Q ss_pred C-CcCCCCeeEEEECCCCCEEEEEec
Q 012410 344 L-WHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 344 ~-~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
. -|| .+.|||||+.++=.|.
T Consensus 350 q~~hP-----hp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 350 QVTHP-----HPSFSPDGKWVLFRSD 370 (386)
T ss_dssp STT---------EE-TTSSEEEEEE-
T ss_pred ccCCC-----CCccCCCCCEEEEECC
Confidence 1 132 4789999999987775
No 334
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.74 E-value=0.021 Score=64.17 Aligned_cols=116 Identities=10% Similarity=0.158 Sum_probs=86.1
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-----------Cc-EEEEEe-CCeEEEEe
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-----------NQ-LFLTFR-NRTVAVWN 330 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-----------gq-llaS~s-D~TIklWd 330 (464)
..++++|+ |.|+-|+. ..|-+-|..+-|.++++..|...|.+|-|.|. .+ +||++. .|.|-|||
T Consensus 19 ~A~Dw~~~--GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 19 NAADWSPS--GLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred cccccCcc--ceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 67888774 55555654 57888999999999999999999999988653 33 456666 99999999
Q ss_pred C-CCceEEEeccCCCCcCCCCeeEEEECC---CC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 331 F-RGELVTSFEDHLLWHPDCNTNNIYITS---DQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 331 ~-~Ge~l~tl~gH~~~~~~~~v~svafSp---Dg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+ .+-.+.-|+.|... +..+++-| |. ++|+.-.. -.+|-|||..||+-+.+..
T Consensus 96 ~~~~s~~~~l~~~~~~-----~qdl~W~~~rd~Srd~LlaIh~-----------ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDS-----VQDLCWVPARDDSRDVLLAIHG-----------SSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred ehhhhhhhhhcCCCcc-----hhheeeeeccCcchheeEEecC-----------CcEEEEEEccCCceeeccc
Confidence 9 58877888888876 34455544 44 44443322 5799999999999887653
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.51 E-value=1.2 Score=45.80 Aligned_cols=283 Identities=10% Similarity=0.041 Sum_probs=146.0
Q ss_pred chhhhhhccccceeeeecCCCCCcccchhhhccccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCc--
Q 012410 55 NAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE-- 130 (464)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~-- 130 (464)
+..++||. .+...|-.||.+..-..-|... ...+.....+ |+.|+-.. ++-+-+.+..+++..+--+.+...
T Consensus 12 ~~~~~~r~-s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 12 NYTKQWRH-SFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEESSS-EEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEE
T ss_pred CcEEeeee-ccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEE
Confidence 34455555 2346677888777432223322 3334444444 77766654 345666665666544322222111
Q ss_pred --------------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 131 --------------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 131 --------------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
.-..+.|||||+.||.+..+...= +.+.+-+..... ...+-.. .+.+ +-
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v------~~~~~~~~~~~~--~~yp~~~--------~~~Y-Pk 150 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV------PEYPLPDYSPPD--SQYPEVE--------SIRY-PK 150 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-------EEEEEEESSST--ESS-EEE--------EEE---B
T ss_pred cCccceeccccccccccceEECCCCCEEEEEEECCcCC------ceEEeeccCCcc--ccCCccc--------cccc-CC
Confidence 125678999999999966433221 222222211111 0011111 2223 11
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEE-Eec------CCCEeEEEEeCC-------------CceeEEEEEcCCCcEEEEE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLY-SIS------DKHVQEIKIRSS-------------SHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~-tl~------~~~V~~Vafs~s-------------~d~tIklWdi~tG~~l~tl 256 (464)
-|..-.. -.+.|+|+++++... .+. +.-+..+.++++ ....+.+.|.++|++-..+
T Consensus 151 ~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~ 226 (353)
T PF00930_consen 151 AGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL 226 (353)
T ss_dssp TTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE
T ss_pred CCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE
Confidence 1211111 135567888877532 211 234667777653 3346778899888876655
Q ss_pred e-eCCcce---eeEEEE-ccCCCeEEEEeCCCe--EEEEECCCCcEEEEcccCCCceEE-EEEcCCCcEEE-EEe-C--C
Q 012410 257 Y-HLLHRN---KKVDFI-EQFNEKLLVKQENEN--LQILDVRNAELMEVSRTEFMTPSA-FIFLYENQLFL-TFR-N--R 324 (464)
Q Consensus 257 ~-~~~~~~---~~V~F~-~~~~~~lla~s~D~t--IkIWDv~tg~~l~~l~gh~~~v~s-v~Fspdgqlla-S~s-D--~ 324 (464)
+ ....++ ....|. +..++.+.+...||- |.+.|..++.......| ...|.. +.+.++++.|. ++. + .
T Consensus 227 ~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~ 305 (353)
T PF00930_consen 227 EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPG 305 (353)
T ss_dssp EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTT
T ss_pred EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-ceeecccceEcCCCCEEEEEecCCCCC
Confidence 5 222343 466676 543444444556665 44567666665544444 445655 55788877543 444 2 3
Q ss_pred eEEEEeC--C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 325 TVAVWNF--R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 325 TIklWd~--~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
.-.||-+ . |.-++.|......+ .++.|||||++++-.|.
T Consensus 306 ~r~lY~v~~~~~~~~~~LT~~~~~~-----~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLTCEDGDH-----YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SBEEEEEETTETTEEEESSTTSSTT-----EEEEE-TTSSEEEEEEE
T ss_pred ceEEEEEEeCCCCCeEeccCCCCCc-----eEEEECCCCCEEEEEEc
Confidence 5677765 6 67788888777652 48999999999987663
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.45 E-value=1.2 Score=45.11 Aligned_cols=263 Identities=17% Similarity=0.168 Sum_probs=132.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
..+|+.++++|.+.+-|..+|+.+-.--. ...|.+-+.= -|+.+ +++-| . ..+.+-+..+|....-|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfV-V~GCy---~------g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFV-VLGCY---S------GGLYFLCVKTGSQIWNF 89 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEE-EEEEc---c------CcEEEEEecchhheeee
Confidence 57889999999999999888887654211 1223333322 24443 32322 2 34555566888553322
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCE-eEEEEeCCCceeEEEEEcCCCcEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHV-QEIKIRSSSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V-~~Vafs~s~d~tIklWdi~tG~~l~t 255 (464)
...+ -++-..-+ +++|..+-.||.|++.-.=|.+++.|+|..+ .+.+ -+=++.| .|+.+..= +..|.+|.+
T Consensus 90 ~~~~--~vk~~a~~---d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~~sly~a-~t~G~vlav 162 (354)
T KOG4649|consen 90 VILE--TVKVRAQC---DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GDGSLYAA-ITAGAVLAV 162 (354)
T ss_pred eehh--hhccceEE---cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC-CCceEEEE-eccceEEEE
Confidence 2222 12211133 3678899999999999999999999999876 3332 1111222 24444332 234666654
Q ss_pred EeeC--Ccce-----eeEEEEc-cC-CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEE-EEc-CCCcEEEEEe-C
Q 012410 256 FYHL--LHRN-----KKVDFIE-QF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF-IFL-YENQLFLTFR-N 323 (464)
Q Consensus 256 l~~~--~~~~-----~~V~F~~-~~-~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv-~Fs-pdgqllaS~s-D 323 (464)
-... .+.. ...-|.+ +. +..+..+..||.+--.| ..|+-+....+. ..+++= .-| |--|.|.-.+ |
T Consensus 163 t~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~-GpIf~~Pc~s~Ps~q~i~~~~~~ 240 (354)
T KOG4649|consen 163 TKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATK-GPIFMEPCESRPSCQQISLENEN 240 (354)
T ss_pred ccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCC-CceecccccCCCcceEEEEecCC
Confidence 3311 1111 2222322 11 23444455677776666 555444332221 111100 011 4445555555 4
Q ss_pred CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCC------------CCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 324 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD------------QDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 324 ~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpD------------g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
--+..-...|.++-.++-- - +..++++|+ -++|+-+ |.||.+.| +.+.
T Consensus 241 Cf~~~~p~~ghL~w~~~~g--~-----t~~vy~~p~l~F~~h~~~~S~~~ll~~~-----------s~dgkv~i--l~~~ 300 (354)
T KOG4649|consen 241 CFCAPLPIAGHLLWATQSG--T-----TLHVYLSPKLRFDLHSPGISYPKLLRRS-----------SGDGKVMI--LMTS 300 (354)
T ss_pred eEEEeccccceEEEEecCC--c-----EEEEEeCcccceeccCCCCcchhhhhhh-----------cCCCcEEE--EEec
Confidence 4444333344433222111 1 445677763 2233322 34886655 4566
Q ss_pred eEEEEEccCCC
Q 012410 392 KCLAKINATNC 402 (464)
Q Consensus 392 ~cl~tl~gh~~ 402 (464)
+-|+.+..|.+
T Consensus 301 ~sl~~~~s~~g 311 (354)
T KOG4649|consen 301 KSLAEISSNGG 311 (354)
T ss_pred ccccccccCCC
Confidence 77777766654
No 337
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.37 E-value=1.5 Score=45.14 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=62.6
Q ss_pred EEEECC-CCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC---Cce----EEEeccCCCCcCCCCeeEEE
Q 012410 286 QILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL----VTSFEDHLLWHPDCNTNNIY 355 (464)
Q Consensus 286 kIWDv~-tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~---Ge~----l~tl~gH~~~~~~~~v~sva 355 (464)
.||-+. .|..++.+.+|...+..++|||||+.|--+- .+.|.-+++. |.. ..-+.+...--|| .++
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD----G~~ 219 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD----GMA 219 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC----ceE
Confidence 455555 6888888888888899999999997665554 5777777653 322 1122222222222 456
Q ss_pred ECCCCCEEEEEecCCCccccccCCC-CeEEEEeCCCCeEEEEEccC
Q 012410 356 ITSDQDLIISYCKAEPEDQWMEGSA-GSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 356 fSpDg~~LaSgs~~~~~~~~~~s~D-gtIklWdi~tG~cl~tl~gh 400 (464)
.-.||.+-+++-. + +.|..|+.. |+.+..+.-.
T Consensus 220 vDadG~lw~~a~~-----------~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 220 VDADGNLWVAAVW-----------GGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred EeCCCCEEEeccc-----------CCceEEEECCC-CcEEEEEECC
Confidence 6667777654332 2 278888865 8888877655
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.34 E-value=0.046 Score=62.41 Aligned_cols=169 Identities=19% Similarity=0.231 Sum_probs=105.7
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
.+.-+|..+++.....|.+..+ |.= .-.||..|.. |.-. ++|.|.|..+-+...++. .|.
T Consensus 158 ~li~~Dl~~~~e~r~~~v~a~~-v~i--mR~Nnr~lf~----G~t~------G~V~LrD~~s~~~iht~~-------aHs 217 (1118)
T KOG1275|consen 158 KLIHIDLNTEKETRTTNVSASG-VTI--MRYNNRNLFC----GDTR------GTVFLRDPNSFETIHTFD-------AHS 217 (1118)
T ss_pred heeeeecccceeeeeeeccCCc-eEE--EEecCcEEEe----eccc------ceEEeecCCcCceeeeee-------ccc
Confidence 3444556778888888775544 333 3345677777 3344 688898877776643333 455
Q ss_pred eE-EEEeCCCCcEEEEecC---------CCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEee
Q 012410 189 GF-VEFDDVNGKVLTYSAQ---------DSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 189 ~~-VaFs~pdGk~LaSgs~---------D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~ 258 (464)
++ -+|+ ..|..|++++. |.-||||||.+...|--+. |+.+ |
T Consensus 218 ~siSDfD-v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~--------~~~~---P----------------- 268 (1118)
T KOG1275|consen 218 GSISDFD-VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ--------FPYG---P----------------- 268 (1118)
T ss_pred cceeeee-ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc--------cccC---c-----------------
Confidence 54 5686 89999999976 7788899987766543222 1100 0
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcE---EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AEL---MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~---l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
-=+.|.|--..++++.|.-|..++-|..+ ++. +.-...-...+.++.+|+.|+.+|-+. ++.|.+|--
T Consensus 269 -----~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 269 -----QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred -----hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 01123343345666677667777766211 221 111222234588999999999999999 999999973
No 339
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.076 Score=56.71 Aligned_cols=227 Identities=13% Similarity=0.072 Sum_probs=151.0
Q ss_pred cceeehhccCCeEEeeecc--cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCC-CCcccceeeEEEEEeccCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD-NFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~--~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sd-dfs~L~~~ti~l~~i~~G~~~ 174 (464)
-+++-.++.+|-.+-|.-. .|..+.-...+|..+|-|++.|-+|..++|++ + | +.+|+.|+..=...
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~----d~D------hs~KvfDvEn~Dmi 89 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVE----DPD------HSVKVFDVENFDMI 89 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeecc----Ccc------cceeEEEeeccchh
Confidence 7899999999999999722 24444444467889999999999999999954 4 6 89999998665554
Q ss_pred CcccceeeccccCceEEEEeCCCC----cEEEEecCCCcEEEEeCCCCeE--EE--EecCCCEeEEEEeCC--------C
Q 012410 175 SGFALFESESLKWPGFVEFDDVNG----KVLTYSAQDSIYKVFDLKNYTM--LY--SISDKHVQEIKIRSS--------S 238 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdG----k~LaSgs~D~tiKlWdl~tg~~--l~--tl~~~~V~~Vafs~s--------~ 238 (464)
...++- --|+++++..--| .+-++...++.|-|.|-.-..| .+ .++...|-.+...|. .
T Consensus 90 nmiKL~-----~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 90 NMIKLV-----DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred hhcccc-----cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 322211 2244554432334 3444556678888988654433 22 345667777777653 2
Q ss_pred ceeEEEEEcC------CCcEEEEEeeC---------CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc--
Q 012410 239 HVPLKILSIE------DGTVLKVFYHL---------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-- 301 (464)
Q Consensus 239 d~tIklWdi~------tG~~l~tl~~~---------~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-- 301 (464)
.+-|+-|+.+ .+++.-.+++. -....++.|+| ++-++..-+.|..|++.+..+|++++.+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 3568999887 22232223221 11237888998 466666667999999999999987764321
Q ss_pred ------------------------------CCC-ceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEec
Q 012410 302 ------------------------------EFM-TPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 302 ------------------------------h~~-~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~ 340 (464)
|.. .-..++|---|+.|+-+.==-||+-|+ ++++++.|-
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEec
Confidence 111 112345888899888888334999999 799988775
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0074 Score=63.29 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=65.7
Q ss_pred EeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCC
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 416 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~ 416 (464)
-+.+|... |.+++|||... +|..+|. +.+|||-|++|-.|+.++..|.
T Consensus 188 ~lp~~g~~-----IrdlafSp~~~GLl~~asl-----------~nkiki~dlet~~~vssy~a~~--------------- 236 (463)
T KOG1645|consen 188 ILPGEGSF-----IRDLAFSPFNEGLLGLASL-----------GNKIKIMDLETSCVVSSYIAYN--------------- 236 (463)
T ss_pred cccccchh-----hhhhccCccccceeeeecc-----------CceEEEEecccceeeeheeccC---------------
Confidence 45566666 78999999998 7877776 9999999999999999998885
Q ss_pred ccccccccccccccccccccCEEEEEEcCC-CCEEEEeeCCCcEEeccC
Q 012410 417 KSKKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~V~slafspD-g~~LaSgs~DgtVrlWd~ 464 (464)
.+||.+|+-| .+.||.|-..|.|.++|+
T Consensus 237 --------------------~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 237 --------------------QIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred --------------------CceeeeeccCCcceeEEeccCceEEEEEc
Confidence 8999999875 578999999999999985
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.28 E-value=0.4 Score=47.85 Aligned_cols=183 Identities=17% Similarity=0.239 Sum_probs=103.2
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEE
Q 012410 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (464)
Q Consensus 124 ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaS 203 (464)
+.+-.++ +-.+.|+|+++.|.+|. .... .+ ++.=..|+.....++-. ++-+..|++- -||+++++
T Consensus 17 l~g~~~e-~SGLTy~pd~~tLfaV~--d~~~-------~i-~els~~G~vlr~i~l~g---~~D~EgI~y~-g~~~~vl~ 81 (248)
T PF06977_consen 17 LPGILDE-LSGLTYNPDTGTLFAVQ--DEPG-------EI-YELSLDGKVLRRIPLDG---FGDYEGITYL-GNGRYVLS 81 (248)
T ss_dssp -TT--S--EEEEEEETTTTEEEEEE--TTTT-------EE-EEEETT--EEEEEE-SS----SSEEEEEE--STTEEEEE
T ss_pred CCCccCC-ccccEEcCCCCeEEEEE--CCCC-------EE-EEEcCCCCEEEEEeCCC---CCCceeEEEE-CCCEEEEE
Confidence 3333555 89999999999898866 3222 33 22225788765444322 2445589997 68888887
Q ss_pred ecCCCcEEEEeCCC--CeE----EEEec-------CCCEeEEEEeCC--------CceeEEEEEcCC---CcEEEEEee-
Q 012410 204 SAQDSIYKVFDLKN--YTM----LYSIS-------DKHVQEIKIRSS--------SHVPLKILSIED---GTVLKVFYH- 258 (464)
Q Consensus 204 gs~D~tiKlWdl~t--g~~----l~tl~-------~~~V~~Vafs~s--------~d~tIklWdi~t---G~~l~tl~~- 258 (464)
.-.++++-+.++.. ... ...+. ...+-.|++.|. ...|.+|+.+.. +..+.....
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-H
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccc
Confidence 66689999999832 111 12222 135889999874 446777877753 333332221
Q ss_pred -------CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE--ccc-------CCCceEEEEEcCCCcEEEEEe
Q 012410 259 -------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRT-------EFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 259 -------~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~--l~g-------h~~~v~sv~FspdgqllaS~s 322 (464)
...-..+++|.|..+..++-+++.+.|-+.| .+|+.+.. |.. ....+..++|.|+|.+.+++-
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 1123378999997554555588999999999 88887663 333 124689999999999998875
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.26 E-value=0.59 Score=47.26 Aligned_cols=130 Identities=8% Similarity=0.063 Sum_probs=78.9
Q ss_pred CeEEEEECCCC----cEEEEc--ccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCc-eEEEeccCCCCcCCCCeeEE
Q 012410 283 ENLQILDVRNA----ELMEVS--RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGE-LVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 283 ~tIkIWDv~tg----~~l~~l--~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge-~l~tl~gH~~~~~~~~v~sv 354 (464)
|.|.++++... ..++.. ......|.+++-- +|. |+.+.+++|.+|++ ..+ ++..-.-+.. +..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~------~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSP------FYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BS------SSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecce------EEEE
Confidence 78999999885 223222 2234678887633 555 66666799999999 455 4442222222 1233
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
.++.-+++|+.|.. .+.|-+.... .++.+..+.....
T Consensus 134 sl~~~~~~I~vgD~-----------~~sv~~~~~~~~~~~l~~va~d~~------------------------------- 171 (321)
T PF03178_consen 134 SLSVFKNYILVGDA-----------MKSVSLLRYDEENNKLILVARDYQ------------------------------- 171 (321)
T ss_dssp EEEEETTEEEEEES-----------SSSEEEEEEETTTE-EEEEEEESS-------------------------------
T ss_pred EEeccccEEEEEEc-----------ccCEEEEEEEccCCEEEEEEecCC-------------------------------
Confidence 34444678888764 6777777432 3454544432211
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-.+|+++.|-+|++.++.+..+|.|.+..
T Consensus 172 -~~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 172 -PRWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp --BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred -CccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 01789999988888999999999998763
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.23 E-value=1.9 Score=44.96 Aligned_cols=234 Identities=16% Similarity=0.167 Sum_probs=130.6
Q ss_pred eEEEEEEeeCCCEEEEE-EeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce--EEEEeCCCCcEEEEecCC
Q 012410 131 VIRSLFYNKNNDSLITV-SVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG--FVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~sv-Sa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~--~VaFs~pdGk~LaSgs~D 207 (464)
.+....+||||+.+|.. |.-|++. .++++.|+++|+... . .+..+. +++|. +||+.|.+...|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~------~~l~v~Dl~tg~~l~------d-~i~~~~~~~~~W~-~d~~~~~y~~~~ 190 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEW------YTLRVFDLETGKFLP------D-GIENPKFSSVSWS-DDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSE------EEEEEEETTTTEEEE------E-EEEEEESEEEEEC-TTSSEEEEEECS
T ss_pred EeeeeeECCCCCEEEEEecCCCCce------EEEEEEECCCCcCcC------C-cccccccceEEEe-CCCCEEEEEEeC
Confidence 34467899999988854 4445555 789999999997632 1 111121 49997 899999888765
Q ss_pred Cc-----------EEEEeCCCCe----EEEEecCCC--EeEEEEeCC-----------Cc-eeEEEEEcCCC----cEEE
Q 012410 208 SI-----------YKVFDLKNYT----MLYSISDKH--VQEIKIRSS-----------SH-VPLKILSIEDG----TVLK 254 (464)
Q Consensus 208 ~t-----------iKlWdl~tg~----~l~tl~~~~--V~~Vafs~s-----------~d-~tIklWdi~tG----~~l~ 254 (464)
.. |+.|.+.++. +++.-.+.. ...+..+++ .+ ..|.+.+..++ ...+
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 52 7778877663 455444333 445555542 33 56788888765 2233
Q ss_pred EEe-eCCcceeeEEEEccCCCeEEEEe----CCCeEEEEECCCCc---EEEEcccCCCceEEEEEcC-CCcEEEEEe-CC
Q 012410 255 VFY-HLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NR 324 (464)
Q Consensus 255 tl~-~~~~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg~---~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~ 324 (464)
.+. ........|.. .++.+.+-+ .++.|---++.+.. -..++..|...+.-..+.. .+.++++-. |+
T Consensus 271 ~l~~~~~~~~~~v~~---~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 271 LLSPREDGVEYYVDH---HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEESSSS-EEEEEE---ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEeCCCCceEEEEEc---cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 332 21111123332 246555522 44566666777765 2335555554322222333 445666666 65
Q ss_pred --eEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 325 --TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 325 --TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L-aSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.|+++|+. |.....+.--... .|..+...++++.+ ++.+. --.=.+|.-+|+.+|+.
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p~~g----~v~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLPEAG----SVSGVSGDFDSDELRFSYSS--------FTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESSSSS----EEEEEES-TT-SEEEEEEEE--------TTEEEEEEEEETTTTCE
T ss_pred ccEEEEEECCCCcEEeeecCCcce----EEeccCCCCCCCEEEEEEeC--------CCCCCEEEEEECCCCCE
Confidence 78889997 8877665543322 14555555655543 33332 11237899999999886
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.19 E-value=0.31 Score=51.79 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=38.0
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 295 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~ 295 (464)
.|+|++.. |+.+.++.-..+++-.+.|.. ++.|++=..||+++++|+. |+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce
Confidence 36666664 777777663336777888866 4888888899999999976 555
No 345
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.17 E-value=0.25 Score=51.41 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=50.2
Q ss_pred eEEEEECCC--Cc--EEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCC------c---eEEEeccCC--CCcCC
Q 012410 284 NLQILDVRN--AE--LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG------E---LVTSFEDHL--LWHPD 348 (464)
Q Consensus 284 tIkIWDv~t--g~--~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~G------e---~l~tl~gH~--~~~~~ 348 (464)
.|.+++-.+ |+ ..+++......+..++|.++| ++++..+...++.|..| + ++..|.... ..+.
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~- 125 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHS- 125 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccc-
Confidence 677776443 33 234555555678999999999 77765566556667633 2 233354321 0111
Q ss_pred CCeeEEEECCCCCEEEEEe
Q 012410 349 CNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs 367 (464)
.+.++|.|||.+.++-+
T Consensus 126 --~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 126 --LNSLAWGPDGWLYFNHG 142 (367)
T ss_pred --ccCceECCCCCEEEecc
Confidence 56899999999988765
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.097 Score=59.10 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=90.3
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~ 273 (464)
+-+|.++||||.||+|-|-.+-|.+...++. ...+.+|+++|+ |+.+..
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd------------------------------~~~~~s 129 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPD------------------------------FSRQQS 129 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccc------------------------------hhhhhh
Confidence 3689999999999999888887766554443 345555555554 111123
Q ss_pred CeEEEEeCCCeEEEEECCC--CcEEE-EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEecc-CCCCcCC
Q 012410 274 EKLLVKQENENLQILDVRN--AELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFED-HLLWHPD 348 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~t--g~~l~-~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~g-H~~~~~~ 348 (464)
.+.++|+.-| +-|.. ++ |.... ++..-.+.|.++. -.|.++|=++|--||++|. .++.+..++- |....++
T Consensus 130 k~fv~GG~ag-lvL~e-r~wlgnk~~v~l~~~eG~I~~i~--W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e 205 (846)
T KOG2066|consen 130 KQFVSGGMAG-LVLSE-RNWLGNKDSVVLSEGEGPIHSIK--WRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPE 205 (846)
T ss_pred hheeecCcce-EEEeh-hhhhcCccceeeecCccceEEEE--ecCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcc
Confidence 4566666555 55543 11 22112 2333345777774 4688999999777999999 6777776553 3332222
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
.--..+.|.++..+++-= .-+|+|-.|.
T Consensus 206 ~fpphl~W~~~~~LVIGW-------------~d~v~i~~I~ 233 (846)
T KOG2066|consen 206 LFPPHLHWQDEDRLVIGW-------------GDSVKICSIK 233 (846)
T ss_pred cCCCceEecCCCeEEEec-------------CCeEEEEEEe
Confidence 222346777776666543 4578888876
No 347
>PRK10115 protease 2; Provisional
Probab=95.98 E-value=4 Score=46.44 Aligned_cols=233 Identities=10% Similarity=0.160 Sum_probs=125.0
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC---
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD--- 207 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D--- 207 (464)
.+..+.+||||+.|+..... .+-.-.++.+-++.+|+.... .... .+ .+++|+ +||+.|.+...|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~-----~G~E~~~l~v~d~~tg~~l~~--~i~~--~~--~~~~w~-~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDF-----LSRRQYGIRFRNLETGNWYPE--LLDN--VE--PSFVWA-NDSWTFYYVRKHPVT 195 (686)
T ss_pred EEeEEEECCCCCEEEEEecC-----CCcEEEEEEEEECCCCCCCCc--cccC--cc--eEEEEe-eCCCEEEEEEecCCC
Confidence 46677889999988773211 222337788888888874211 1111 11 369997 899988887664
Q ss_pred ---CcEEEEeCCCC----eEEEEecCCCEe-EEEE-----------eCCCceeEEEEEc--CCCcEEEEEeeCCcceeeE
Q 012410 208 ---SIYKVFDLKNY----TMLYSISDKHVQ-EIKI-----------RSSSHVPLKILSI--EDGTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 208 ---~tiKlWdl~tg----~~l~tl~~~~V~-~Vaf-----------s~s~d~tIklWdi--~tG~~l~tl~~~~~~~~~V 266 (464)
..+.++++.|+ .+++.-.++..+ ++.. +...+..+.+++. .+|+....+........
T Consensus 196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 273 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-- 273 (686)
T ss_pred CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE--
Confidence 35667788888 345443233222 1111 1234456788884 35653222322111112
Q ss_pred EEEccCCCeEEEEe--CCCeEEEE--ECC-CCcEEEEcccCC-CceEEEEEcCCCcEEEEEe-CCeEEEEeC--CCceEE
Q 012410 267 DFIEQFNEKLLVKQ--ENENLQIL--DVR-NAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVT 337 (464)
Q Consensus 267 ~F~~~~~~~lla~s--~D~tIkIW--Dv~-tg~~l~~l~gh~-~~v~sv~FspdgqllaS~s-D~TIklWd~--~Ge~l~ 337 (464)
.+. ..++.+...+ ...+-+|. ++. +++...++.... ..+.++.+. .+.++++.. ++.-+|+-+ .+..+.
T Consensus 274 ~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~ 351 (686)
T PRK10115 274 SLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI 351 (686)
T ss_pred EEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence 222 2345555543 22344444 554 333333333323 367777777 557777777 887666654 455555
Q ss_pred Eec-cCCCCcCCCCeeEEEEC--CC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 338 SFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 338 tl~-gH~~~~~~~~v~svafS--pD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
.+. +.... +..+.++ ++ +.++++.+. ...-++|..+|+.+++
T Consensus 352 ~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 352 GIAFDDPAY-----VTWIAYNPEPETSRLRYGYSS--------MTTPDTLFELDMDTGE 397 (686)
T ss_pred EecCCCCce-----EeeecccCCCCCceEEEEEec--------CCCCCEEEEEECCCCc
Confidence 554 22211 2233445 44 446666653 1235788899998876
No 348
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.98 E-value=0.0014 Score=71.77 Aligned_cols=186 Identities=18% Similarity=0.148 Sum_probs=117.3
Q ss_pred ceeehhccCCeEEeeecccccEe-eEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEeccC--CCC
Q 012410 99 DIVFALAHSGVCAAFSRETNRRI-CFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPD 174 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l-~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~~G--~~~ 174 (464)
.|++++...|.|.+-.+.+-..- +.+...+...-.+++|++. -..||. +-+. +-.--.++|||+.++ .+.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAa----gldk--hrnds~~~Iwdi~s~ltvPk 144 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAA----GLDK--HRNDSSLKIWDINSLLTVPK 144 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHh----hhhh--hcccCCccceecccccCCCc
Confidence 56666777776666542221111 2233446666778888885 234444 2221 001146789999988 332
Q ss_pred CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC-CeEEEEecCCCEeEEEEeC--------CCceeEEEE
Q 012410 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDKHVQEIKIRS--------SSHVPLKIL 245 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t-g~~l~tl~~~~V~~Vafs~--------s~d~tIklW 245 (464)
.. ++|..+.+.-..+|.+. -|.++|.+|...+.|+++|+.. ..-...+.+..|+.+.+.| ..|+-|.||
T Consensus 145 e~-~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiw 222 (783)
T KOG1008|consen 145 ES-PLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIW 222 (783)
T ss_pred cc-cccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeec
Confidence 22 33333333334478886 7999999999999999999873 2222344466788888876 378899999
Q ss_pred EcC--CCcEEEEEeeCCc----ceeeEEEEccCCCeEEEEe-CCCeEEEEECCC
Q 012410 246 SIE--DGTVLKVFYHLLH----RNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN 292 (464)
Q Consensus 246 di~--tG~~l~tl~~~~~----~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t 292 (464)
|.+ --..++++.+... ++..++++|-.++.+++-+ .-+||+++|++.
T Consensus 223 D~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 223 DTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 932 1123333333212 3689999998888888876 669999999875
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.98 E-value=0.34 Score=42.79 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=50.4
Q ss_pred eeEEEEccCC---CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEe
Q 012410 264 KKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSF 339 (464)
Q Consensus 264 ~~V~F~~~~~---~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl 339 (464)
.++++...++ ..|++||+|..||+|+ ..+++.... ++..|.+++-++.++ |+-+- +|||-+++-.-++.+.=
T Consensus 3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~~RlWRiK 78 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGGGR-FAYALANGTVGVYDRSQRLWRIK 78 (111)
T ss_pred eEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCCCE-EEEEecCCEEEEEeCcceeeeec
Confidence 4445544332 5799999999999997 446665544 346788888777755 66666 99999998544443333
Q ss_pred ccC
Q 012410 340 EDH 342 (464)
Q Consensus 340 ~gH 342 (464)
..|
T Consensus 79 SK~ 81 (111)
T PF14783_consen 79 SKN 81 (111)
T ss_pred cCC
Confidence 344
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.94 E-value=3.5 Score=45.42 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=109.4
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCEe----------EEEE------eCCCceeEEEEEcCCCcEEEEEe
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQ----------EIKI------RSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V~----------~Vaf------s~s~d~tIklWdi~tG~~l~tl~ 257 (464)
+|.+.+ ++.++.|.=.|.+||+.+-+... ..+. .+++ -.+.|..|.-+|.+||+.+-...
T Consensus 69 ~g~vyv-~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYV-TTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEE-ECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 454433 45556677778888887754321 1111 1222 22467788888999999998765
Q ss_pred eCCcc-eeeEEEEcc-CCCeEEEEe------CCCeEEEEECCCCcEEEEccc---C------------------------
Q 012410 258 HLLHR-NKKVDFIEQ-FNEKLLVKQ------ENENLQILDVRNAELMEVSRT---E------------------------ 302 (464)
Q Consensus 258 ~~~~~-~~~V~F~~~-~~~~lla~s------~D~tIkIWDv~tg~~l~~l~g---h------------------------ 302 (464)
...+. -..+.-.|. .++.++++. .++.|.-.|++||+.+=.... .
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 21011 111111110 246777764 278999999999998743211 1
Q ss_pred ----CCceEE-EEEcCCCcEEEEEe-C-----C-----------eEEEEeC-CCceEEEec--cCCCCcCCCCeeEEEE-
Q 012410 303 ----FMTPSA-FIFLYENQLFLTFR-N-----R-----------TVAVWNF-RGELVTSFE--DHLLWHPDCNTNNIYI- 356 (464)
Q Consensus 303 ----~~~v~s-v~FspdgqllaS~s-D-----~-----------TIklWd~-~Ge~l~tl~--gH~~~~~~~~v~svaf- 356 (464)
...+|. .++-|+..++--+. + + +|---|. +||++-.|+ -|..|..|+.--.+-+
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 012332 23444444443332 2 2 3444567 699876555 5777877653233333
Q ss_pred -CCCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 357 -TSDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 357 -SpDg~---~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
..||+ .++-+.+ +|-+.+-|-.|||.|.
T Consensus 308 ~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 308 LKKDGKPRKLLAHADR-----------NGFFYVLDRTNGKLLS 339 (527)
T ss_pred eccCCcEEEEEEEeCC-----------CceEEEEECCCCceec
Confidence 35887 8888887 9999999999999874
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.89 E-value=0.0017 Score=71.23 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=102.8
Q ss_pred cceeeEEEEccCCCeEEEEe----CCCeEEEEECCCC--cEEEE--ccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 261 HRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNA--ELMEV--SRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg--~~l~~--l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
....+++|+|.|-+.|++|= .|-.++|||+.++ ...+. +.+ --..+.++.+..|-+++++|. .+.|++.|
T Consensus 103 r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifd 182 (783)
T KOG1008|consen 103 RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFD 182 (783)
T ss_pred ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhh
Confidence 34477888887655666652 6788999999998 33221 111 223455888889999999999 89999999
Q ss_pred CCCceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeC-CC-CeEEEEEccCCCCCCcc
Q 012410 331 FRGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSI-LT-GKCLAKINATNCSPKVD 407 (464)
Q Consensus 331 ~~Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi-~t-G~cl~tl~gh~~~~~~~ 407 (464)
++-.|.+.-+-.+.. |..+.+.| .+.+++|.+ ||-|-+||. .. ...+.++....+
T Consensus 183 lRqs~~~~~svnTk~-----vqG~tVdp~~~nY~cs~~------------dg~iAiwD~~rnienpl~~i~~~~N----- 240 (783)
T KOG1008|consen 183 LRQSLDSVSSVNTKY-----VQGITVDPFSPNYFCSNS------------DGDIAIWDTYRNIENPLQIILRNEN----- 240 (783)
T ss_pred hhhhhhhhhhhhhhh-----cccceecCCCCCceeccc------------cCceeeccchhhhccHHHHHhhCCC-----
Confidence 976665544434433 55678899 999999876 899999993 11 122222222211
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeC-CCcEEecc
Q 012410 408 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNR-HGLVHVWS 463 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~-DgtVrlWd 463 (464)
..-+.+..++|.|-.. +|++-++ -++|++.|
T Consensus 241 -------------------------~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 241 -------------------------KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred -------------------------CcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 1112688999999765 3444444 46788776
No 352
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.88 E-value=0.0014 Score=74.07 Aligned_cols=105 Identities=11% Similarity=0.141 Sum_probs=65.9
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEE-----------EcCCCcEEEEEe-CCeEEEEeC--CCc----eE
Q 012410 275 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI-----------FLYENQLFLTFR-NRTVAVWNF--RGE----LV 336 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~-----------FspdgqllaS~s-D~TIklWd~--~Ge----~l 336 (464)
++-.+-.|++|+|.++.+.. ...+++|..++..++ .||||..||..+ ||.++.|.+ +|+ |+
T Consensus 197 ~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl 275 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCL 275 (1283)
T ss_pred eeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhh
Confidence 33444556666665533322 244555665554433 489999999999 999999986 575 67
Q ss_pred EEeccCCCCcCCCCeeEEEECCC---------CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpD---------g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
+..+-|+.. +. |-.+ |..+ =.+++.+++ -..-+|+|.-..-+|+
T Consensus 276 hewkphd~~-p~--vC~l-c~~~~~~~v~i~~w~~~Itttd----------~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 276 HEWKPHDKH-PR--VCWL-CHKQEILVVSIGKWVLRITTTD----------VNREEKFWAEAPWQCL 328 (1283)
T ss_pred hccCCCCCC-Cc--eeee-eccccccCCccceeEEEEeccc----------CCcceeEeeccchhhh
Confidence 788888731 11 2222 2222 135666654 2567899998888887
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.87 E-value=2.4 Score=45.06 Aligned_cols=163 Identities=13% Similarity=0.169 Sum_probs=85.0
Q ss_pred cEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe-eC--------CcceeeEEEEc
Q 012410 209 IYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY-HL--------LHRNKKVDFIE 270 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~-~~--------~~~~~~V~F~~ 270 (464)
.|+|++. .|+++.++. .+.|-.+.|+.+ .|+++++.|.. |+. .|. +. ..++..+.|..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCC
Confidence 5999984 688887665 578888888764 68999999987 766 332 10 01111112211
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCc-E--EEEc---cc-----CCC-ceEE-EEEcCCCcEEEEEeCCeEEEEeCCCceEE
Q 012410 271 QFNEKLLVKQENENLQILDVRNAE-L--MEVS---RT-----EFM-TPSA-FIFLYENQLFLTFRNRTVAVWNFRGELVT 337 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~-~--l~~l---~g-----h~~-~v~s-v~FspdgqllaS~sD~TIklWd~~Ge~l~ 337 (464)
+|..+..+ ++.| +-+.+.+ . .+.+ .+ |.. ..+. ..++.+....+... .|+.+.
T Consensus 138 --~GivvLt~-~~~~--~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---------~g~~i~ 203 (410)
T PF04841_consen 138 --NGIVVLTG-NNRF--YVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---------NGETIY 203 (410)
T ss_pred --CCEEEECC-CCeE--EEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---------cCCEEE
Confidence 23332232 2222 2222221 1 1111 11 000 0000 12334444333333 444444
Q ss_pred EeccCCC-Cc-CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 338 SFEDHLL-WH-PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 338 tl~gH~~-~~-~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
.+..|.. .+ .+..+..+++||+|++||-... +|++.+.+..-.+++..+.-.
T Consensus 204 ~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~-----------~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 204 IIDENSFKQIDSDGPIIKIAVSPNGKFIALFTD-----------SGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred EEEccccccccCCCCeEEEEECCCCCEEEEEEC-----------CCCEEEEECcccceeEEeecC
Confidence 3333321 00 0012678999999999999876 899988887666777666554
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.13 Score=58.04 Aligned_cols=184 Identities=9% Similarity=0.040 Sum_probs=120.7
Q ss_pred cchhhhccccceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 012410 80 FVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK 159 (464)
Q Consensus 80 ~~l~~l~~~s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~ 159 (464)
...+.+..+..+.....++..+|.+.+.|.+.+++ .+|.. .-|+.|... ..+|++++| +++|
T Consensus 31 n~~~~~~~~D~is~~av~~~~~~~GtH~g~v~~~~-~~~~~--~~~~~~s~~------~~~Gey~as----CS~D----- 92 (846)
T KOG2066|consen 31 NLVKNFLQNDAISCCAVHDKFFALGTHRGAVYLTT-CQGNP--KTNFDHSSS------ILEGEYVAS----CSDD----- 92 (846)
T ss_pred cccHHHHhhhHHHHHHhhcceeeeccccceEEEEe-cCCcc--ccccccccc------ccCCceEEE----ecCC-----
Confidence 33444445555555666799999999999999998 66766 334656553 778999999 7788
Q ss_pred eeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC-----CcEEEEecCCCcEEEEeCC-CCeEEE-Eec--CCCEe
Q 012410 160 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN-----GKVLTYSAQDSIYKVFDLK-NYTMLY-SIS--DKHVQ 230 (464)
Q Consensus 160 ~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd-----Gk~LaSgs~D~tiKlWdl~-tg~~l~-tl~--~~~V~ 230 (464)
.++-|-.+-+++.. ++...-..+.+|+|+ || .+..++|+.-| +-|..=. =|.... .++ .+.|.
T Consensus 93 -Gkv~I~sl~~~~~~-----~~~df~rpiksial~-Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~ 164 (846)
T KOG2066|consen 93 -GKVVIGSLFTDDEI-----TQYDFKRPIKSIALH-PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH 164 (846)
T ss_pred -CcEEEeeccCCccc-----eeEecCCcceeEEec-cchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceE
Confidence 78888777666642 111122445599996 88 45667787776 5454311 011111 244 47899
Q ss_pred EEEEeCC-----CceeEEEEEcCCCcEEEEEeeCCcce------eeEEEEccCCCeEEEEeCCCeEEEEECCC
Q 012410 231 EIKIRSS-----SHVPLKILSIEDGTVLKVFYHLLHRN------KKVDFIEQFNEKLLVKQENENLQILDVRN 292 (464)
Q Consensus 231 ~Vafs~s-----~d~tIklWdi~tG~~l~tl~~~~~~~------~~V~F~~~~~~~lla~s~D~tIkIWDv~t 292 (464)
+|.+..+ +|.-||+.|+.+++.+..++-....+ ..+.|.+ +..|+=|..-+|+|--++.
T Consensus 165 ~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~---~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 165 SIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD---EDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecC---CCeEEEecCCeEEEEEEec
Confidence 9999764 78889999999999888776322333 3344433 3444445556899888873
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.80 E-value=0.58 Score=50.48 Aligned_cols=130 Identities=12% Similarity=0.248 Sum_probs=75.4
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEE-eCCCceEEEecc
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW-NFRGELVTSFED 341 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklW-d~~Ge~l~tl~g 341 (464)
.++.++|. ++.++-..|+.--|+......-... ..-..++|.+.++ +|.-. +++|+|. |++.+-+.++.-
T Consensus 36 ~~ls~npn--gr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 36 QSLSHNPN--GRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp SEEEE-TT--SSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----
T ss_pred eeEEECCC--CCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcC
Confidence 77788883 4444446677777877443333332 2234678999666 66666 8999995 665444333432
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
.. ++..|.- |.+|+..+ ++.|-++|+++++.++.+.-.
T Consensus 108 ~~------~~~~If~---G~LL~~~~------------~~~i~~yDw~~~~~i~~i~v~--------------------- 145 (443)
T PF04053_consen 108 PF------SVEKIFG---GNLLGVKS------------SDFICFYDWETGKLIRRIDVS--------------------- 145 (443)
T ss_dssp SS-------EEEEE----SSSEEEEE------------TTEEEEE-TTT--EEEEESS----------------------
T ss_pred Cc------ccceEEc---CcEEEEEC------------CCCEEEEEhhHcceeeEEecC---------------------
Confidence 21 1445544 89888765 568999999999999998532
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
.|..|.||+||+.+|=.+.|..
T Consensus 146 ---------------~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 146 ---------------AVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp ---------------E-EEEEE-TTSSEEEEE-S-SE
T ss_pred ---------------CCcEEEEECCCCEEEEEeCCeE
Confidence 5788999999999998886643
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.78 E-value=2.5 Score=42.68 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=80.4
Q ss_pred eeEEEEEcCCC----cEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccC-CCceEEEEE
Q 012410 240 VPLKILSIEDG----TVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTE-FMTPSAFIF 311 (464)
Q Consensus 240 ~tIklWdi~tG----~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh-~~~v~sv~F 311 (464)
+.|.++++.+. ..++.+. ...+.+.+++- ++++|+++. ++.|.+|++...+ ++..-.-+ ...+.++.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~---~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~- 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICS---FNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS- 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEE---ETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhh---hCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEe-
Confidence 88999999884 2333221 12356666664 457855544 5899999999998 66543322 12455543
Q ss_pred cCCCcEEEEEe-CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 312 LYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
..+.+++.|. -+.|-+..+ .++.+..+.......+ +.++.|-+|++.++.+.. +|.|.++..
T Consensus 137 -~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~---v~~~~~l~d~~~~i~~D~-----------~gnl~~l~~ 201 (321)
T PF03178_consen 137 -VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW---VTAAEFLVDEDTIIVGDK-----------DGNLFVLRY 201 (321)
T ss_dssp -EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE---EEEEEEE-SSSEEEEEET-----------TSEEEEEEE
T ss_pred -ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc---EEEEEEecCCcEEEEEcC-----------CCeEEEEEE
Confidence 3355788777 777777754 4665555554333222 778888877787777765 899988876
Q ss_pred C
Q 012410 389 L 389 (464)
Q Consensus 389 ~ 389 (464)
.
T Consensus 202 ~ 202 (321)
T PF03178_consen 202 N 202 (321)
T ss_dssp -
T ss_pred C
Confidence 4
No 357
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.77 E-value=0.016 Score=56.94 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=85.4
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-------CCcEEEEEe-CCeEEEEeCC--CceEEEeccCCC
Q 012410 275 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-------ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLL 344 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-------dgqllaS~s-D~TIklWd~~--Ge~l~tl~gH~~ 344 (464)
.+++.+.|++++=.+++--+ +.+.+.-|-. -+..++.|. |+.|.+|+.. |+..-....-..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k---------~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK---------ESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhh---------hhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence 35667888888877765433 2222222222 234466677 9999999874 554332222222
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
.+ ..-|....++.+...++. ||-||.|+++-++-+-....|+.
T Consensus 103 ~i----~~~Ip~~~~~~~~c~~~~-----------dg~ir~~n~~p~k~~g~~g~h~~---------------------- 145 (238)
T KOG2444|consen 103 SI----DLGIPNGRDSSLGCVGAQ-----------DGRIRACNIKPNKVLGYVGQHNF---------------------- 145 (238)
T ss_pred cc----eeccccccccceeEEecc-----------CCceeeeccccCceeeeeccccC----------------------
Confidence 21 233444555556666654 99999999999998888877773
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEe--eCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTG--NRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSg--s~DgtVrlWd~ 464 (464)
+.+..+..+--+..|+++ |.|.+++.|++
T Consensus 146 -----------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 -----------ESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred -----------CCcceeEEecCCceEEeeccccchhhhhcch
Confidence 145556666677788888 89999999974
No 358
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.76 E-value=0.54 Score=55.46 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=74.7
Q ss_pred EEEEEcCCCcEEEEE-----eC-CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 307 SAFIFLYENQLFLTF-----RN-RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 307 ~sv~FspdgqllaS~-----sD-~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
.+|.|--||++||.+ .+ ++||+||-+|.+-.+=+--..- =.++++=|.|.+||+--. .++|
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~--------~~sd 265 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGL-----QHSLSWKPSGSLIAAIQC--------KTSD 265 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCccccc-----ccceeecCCCCeEeeeee--------cCCC
Confidence 468899999999993 36 8999999887764433322221 125788999999998654 2347
Q ss_pred CeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE---eeCCC
Q 012410 381 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT---GNRHG 457 (464)
Q Consensus 381 gtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS---gs~Dg 457 (464)
++|.++. .+|-- |..++ .. .++.-..|..|+|+.++..||. .....
T Consensus 266 ~~IvffE-rNGL~------hg~f~----l~--------------------~p~de~~ve~L~Wns~sdiLAv~~~~~e~~ 314 (1265)
T KOG1920|consen 266 SDIVFFE-RNGLR------HGEFV----LP--------------------FPLDEKEVEELAWNSNSDILAVVTSNLENS 314 (1265)
T ss_pred CcEEEEe-cCCcc------ccccc----cC--------------------CcccccchheeeecCCCCceeeeecccccc
Confidence 7899987 35431 22100 00 0000013889999999999997 56666
Q ss_pred cEEecc
Q 012410 458 LVHVWS 463 (464)
Q Consensus 458 tVrlWd 463 (464)
.|+||-
T Consensus 315 ~v~lwt 320 (1265)
T KOG1920|consen 315 LVQLWT 320 (1265)
T ss_pred eEEEEE
Confidence 699993
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.63 E-value=0.69 Score=40.87 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=42.7
Q ss_pred eEEEEEcC---CC-cEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 306 PSAFIFLY---EN-QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 306 v~sv~Fsp---dg-qllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
|.|+++.+ || .-|+.|| |..||+++ ..+++..+.-+.. |.+++-.+.++ ++-+-. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~-~~e~~~Ei~e~~~------v~~L~~~~~~~-F~Y~l~-----------N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK-GDEIVAEITETDK------VTSLCSLGGGR-FAYALA-----------N 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe-CCcEEEEEecccc------eEEEEEcCCCE-EEEEec-----------C
Confidence 56666553 32 3567777 99999999 5688888877754 45665555555 443433 8
Q ss_pred CeEEEEe
Q 012410 381 GSINVSS 387 (464)
Q Consensus 381 gtIklWd 387 (464)
|||.+++
T Consensus 63 GTVGvY~ 69 (111)
T PF14783_consen 63 GTVGVYD 69 (111)
T ss_pred CEEEEEe
Confidence 9999887
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.59 E-value=0.45 Score=49.62 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=61.8
Q ss_pred CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC-----------eEEEEeC-CC--ceEEEeccCCCC
Q 012410 281 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-----------TVAVWNF-RG--ELVTSFEDHLLW 345 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~-----------TIklWd~-~G--e~l~tl~gH~~~ 345 (464)
+--+|++.|+.+|+.+...-.. .....+.|++||+.|.-.. |. .|..|.+ ++ +-.-.|++....
T Consensus 148 e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~ 226 (414)
T PF02897_consen 148 EWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP 226 (414)
T ss_dssp SEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT
T ss_pred ceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC
Confidence 4467999999999877632111 1122389999999887776 44 2788887 43 223445544432
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCC-CeEEEEeCCCC
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA-GSINVSSILTG 391 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D-gtIklWdi~tG 391 (464)
.. .-++..|+||++|+-.+.+ +.+ ..|.+-|+.++
T Consensus 227 ~~---~~~~~~s~d~~~l~i~~~~--------~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 227 FW---FVSVSRSKDGRYLFISSSS--------GTSESEVYLLDLDDG 262 (414)
T ss_dssp TS---EEEEEE-TTSSEEEEEEES--------SSSEEEEEEEECCCT
T ss_pred cE---EEEEEecCcccEEEEEEEc--------cccCCeEEEEecccc
Confidence 10 3478999999998876642 223 56777777664
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.059 Score=59.40 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=58.0
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCee-EEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTN-NIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~-svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
+.-+.++|.-.+||..- +|.|-+.-+.-+.+-++.=|... |. +++|-|||++||-|-+ ||||
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~-----v~~sL~W~~DGkllaVg~k-----------dG~I 86 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGEN-----VTASLCWRPDGKLLAVGFK-----------DGTI 86 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCc-----cceeeeecCCCCEEEEEec-----------CCeE
Confidence 44566899999999988 88776655554555555433333 44 8999999999999987 9999
Q ss_pred EEEeCCCCeEEEE
Q 012410 384 NVSSILTGKCLAK 396 (464)
Q Consensus 384 klWdi~tG~cl~t 396 (464)
+|-|+++|.-+..
T Consensus 87 ~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 87 RLHDVEKGGRLVS 99 (665)
T ss_pred EEEEccCCCceec
Confidence 9999999988776
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.47 E-value=0.42 Score=54.92 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc------CCCeEEEEeCCCeEEEEECCCC-cEEEEcccC----CCc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ------FNEKLLVKQENENLQILDVRNA-ELMEVSRTE----FMT 305 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~------~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh----~~~ 305 (464)
.....|.-.|+++|+++....-+ ..+.=+.|.|. .+++.+.|=.+..|-.||.+-. ..+....+| ...
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~-~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVH-DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecC-CCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 34567888999999999988732 11112344443 2467778878899999999974 322222222 123
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeCCCce-EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNFRGEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~~Ge~-l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
-.+++-+-+|. ||.|| +|-|||+|-.|.- .+.|.|=..+ |..|..|.||++|+.-| +..+
T Consensus 580 Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~p-----I~~iDvt~DGkwilaTc------------~tyL 641 (794)
T PF08553_consen 580 FSCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDP-----IIGIDVTADGKWILATC------------KTYL 641 (794)
T ss_pred ceEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCC-----eeEEEecCCCcEEEEee------------cceE
Confidence 45667778887 45566 9999999975543 3455554455 78999999999999988 6788
Q ss_pred EEEeCC
Q 012410 384 NVSSIL 389 (464)
Q Consensus 384 klWdi~ 389 (464)
=|.+..
T Consensus 642 lLi~t~ 647 (794)
T PF08553_consen 642 LLIDTL 647 (794)
T ss_pred EEEEEe
Confidence 888863
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.44 E-value=1.3 Score=49.44 Aligned_cols=196 Identities=8% Similarity=0.052 Sum_probs=96.3
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC-C
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-S 208 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D-~ 208 (464)
..+.+.+.||||+.++.+-.-... .+...-.||-+..|... .++.... ....-.|| |||+.|++.+.. .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~----~~d~~s~Lwv~~~gg~~--~~lt~g~---~~t~PsWs-pDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRG----APDPASSLWVGPLGGVA--VQVLEGH---SLTRPSWS-LDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCC----CCCcceEEEEEeCCCcc--eeeecCC---CCCCceEC-CCCCceEEEecCcc
Confidence 457899999999998875421110 11134455555433322 2222221 12256786 899888876532 1
Q ss_pred cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEE-
Q 012410 209 IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI- 287 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkI- 287 (464)
..++.+- +....+.+.++..|+.-+.+. ..+.++.++| ++.+++.-. ++.|.+
T Consensus 420 ~~~v~~~---------------------~~~gql~~~~vd~ge~~~~~~---g~Issl~wSp-DG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 420 VVRVIRD---------------------PATGQLARTPVDASAVASRVP---GPISELQLSR-DGVRAAMII-GGKVYLA 473 (591)
T ss_pred eEEEecc---------------------CCCceEEEEeccCchhhhccC---CCcCeEEECC-CCCEEEEEE-CCEEEEE
Confidence 1222211 111222233444444333111 3456666666 344444432 244443
Q ss_pred --EECCCCc-----EEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECC
Q 012410 288 --LDVRNAE-----LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITS 358 (464)
Q Consensus 288 --WDv~tg~-----~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSp 358 (464)
=.-..|+ .++...+-...+.+++|.+++.+++...+....+|-+ +|..-..+.+... +. .|-+|+=+|
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~-~~--~v~~vaa~~ 550 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNL-SA--PVVAVAASP 550 (591)
T ss_pred EEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCc-cC--ceEEEecCC
Confidence 3333444 1222222333467899999999875554444456765 6776554344322 21 166677665
Q ss_pred CCCEEEE
Q 012410 359 DQDLIIS 365 (464)
Q Consensus 359 Dg~~LaS 365 (464)
+ .+++.
T Consensus 551 ~-~iyv~ 556 (591)
T PRK13616 551 S-TVYVT 556 (591)
T ss_pred c-eEEEE
Confidence 3 44443
No 364
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.36 E-value=0.43 Score=49.13 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=43.4
Q ss_pred CceEEEEEcCCCcEEEEEeCCeEEEEeCCCce---EEEeccCCCCcCCCCeeEEEECCC----CCEEEEEec
Q 012410 304 MTPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCK 368 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~---l~tl~gH~~~~~~~~v~svafSpD----g~~LaSgs~ 368 (464)
..|++++|.|||++|++-..|+|++.+.+|.. +..+..-.. ......-.++|+|+ +.+.++++.
T Consensus 2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~-~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFA-DGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBT-STTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccc-cccCCcccceeccccCCCCEEEEEEEc
Confidence 36899999999999998779999999976665 334421100 11123678999995 787787774
No 365
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.47 Score=54.23 Aligned_cols=103 Identities=8% Similarity=0.191 Sum_probs=72.0
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-cEEEEEe-CC-----eEEEEeCC----C---ceE-
Q 012410 272 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NR-----TVAVWNFR----G---ELV- 336 (464)
Q Consensus 272 ~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg-qllaS~s-D~-----TIklWd~~----G---e~l- 336 (464)
.++.++.|+.||.|-+.| ++-+.++-++.+...+..+...-++ ..|+|-. |. ++||||++ + +|+
T Consensus 34 ~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 357888899999999999 7777778888887664444455555 4666655 43 69999972 2 255
Q ss_pred -EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 337 -TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 337 -~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
..+..|.++.....+.+++.|.|=+++|.|-. +|+|-..
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~-----------nG~V~~~ 152 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFT-----------NGLVICY 152 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEec-----------CcEEEEE
Confidence 23444444322223778999999999999976 8888765
No 366
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.047 Score=57.48 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=64.6
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC--Cc
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE 334 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~--Ge 334 (464)
+..-++.++|+|..+|.+..++.+.+|+|-|+++..+......| ..+|+++|--|..-++=++ +|.|-|+|++ -.
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 33566999999965566777999999999999999999998888 7899999986666555555 9999999983 33
Q ss_pred eEEEecc
Q 012410 335 LVTSFED 341 (464)
Q Consensus 335 ~l~tl~g 341 (464)
.+..|.+
T Consensus 271 ~~~e~~a 277 (463)
T KOG1645|consen 271 PLMELVA 277 (463)
T ss_pred hHhhhhh
Confidence 4445544
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.13 E-value=1.2 Score=49.72 Aligned_cols=77 Identities=9% Similarity=-0.020 Sum_probs=47.9
Q ss_pred CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEE---eC-CCceEEEec-----cCCCCcCCCCee
Q 012410 282 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW---NF-RGELVTSFE-----DHLLWHPDCNTN 352 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklW---d~-~Ge~l~tl~-----gH~~~~~~~~v~ 352 (464)
.+.+.+.++..|+..+ .....|.++.|||||..+|--.++.|.|= .- .|+ .++. ....- -.+.
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~---~~~~ 500 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLG---DTAV 500 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccC---Cccc
Confidence 3455555887777655 22346999999999999988777766552 22 365 2221 01110 0145
Q ss_pred EEEECCCCCEEEEE
Q 012410 353 NIYITSDQDLIISY 366 (464)
Q Consensus 353 svafSpDg~~LaSg 366 (464)
++.|.+|+.+++..
T Consensus 501 ~l~W~~~~~L~V~~ 514 (591)
T PRK13616 501 SLDWRTGDSLVVGR 514 (591)
T ss_pred cceEecCCEEEEEe
Confidence 78899999977553
No 368
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.10 E-value=0.91 Score=47.22 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=58.0
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCC-----Cc---EEEEccc----CCCceEEEEEcCCCcEEEEEeC-----
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-----AE---LMEVSRT----EFMTPSAFIFLYENQLFLTFRN----- 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-----g~---~l~~l~g----h~~~v~sv~FspdgqllaS~sD----- 323 (464)
.....++|.+. + +++++.++..++.|... ++ ++..+.. +...+..++|.|||.+.++-++
T Consensus 72 ~~p~Gi~~~~~--G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVG--G-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecC--C-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 34467777663 5 77777666555656432 12 2222322 2345788999999999887552
Q ss_pred ---------------CeEEEEeCCCceEEEe-ccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 324 ---------------RTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 324 ---------------~TIklWd~~Ge~l~tl-~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
+.|--.|.+|..+..+ .|+.+ .+.++|+|+|+++++-.
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn------p~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN------PYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCcCC------CccceECCCCCEEEEcc
Confidence 2233334444333333 34433 47899999999988744
No 369
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.84 E-value=1.8 Score=43.96 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=115.2
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEee-CCC---------EEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NND---------SLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~-~g~---------~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+.+|-..++||...|-|..+-.++...+- .....-|=+.+| ++. .|++ ...+ .-...+|
T Consensus 104 ~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~~sly~a~t~G~vlav----t~~~-----~~~~~~w 173 (354)
T KOG4649|consen 104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGDGSLYAAITAGAVLAV----TKNP-----YSSTEFW 173 (354)
T ss_pred CCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCCceEEEEeccceEEEE----ccCC-----CCcceeh
Confidence 389999999999999999888777776532 323223333333 332 2222 1111 1223456
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCE-eEEEEe-------C
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHV-QEIKIR-------S 236 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V-~~Vafs-------~ 236 (464)
--..+.++.+-+++-.. +|...-.||++++.. .-+ =.||...|+-.+..-+ .+.- +.|.+- |
T Consensus 174 ~~~~~~PiF~splcv~~------sv~i~~VdG~l~~f~-~sG-~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~ 245 (354)
T KOG4649|consen 174 AATRFGPIFASPLCVGS------SVIITTVDGVLTSFD-ESG-RQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAP 245 (354)
T ss_pred hhhcCCccccCceeccc------eEEEEEeccEEEEEc-CCC-cEEEeecCCCceecccccCCCcceEEEEecCCeEEEe
Confidence 65666655444444432 333333688666544 555 4589988877765443 1222 334431 1
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC--CCeEEE-EeCCCeEEEE---------ECCCCcEEEEcccCCC
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF--NEKLLV-KQENENLQIL---------DVRNAELMEVSRTEFM 304 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~--~~~lla-~s~D~tIkIW---------Dv~tg~~l~~l~gh~~ 304 (464)
-.-.-=-+|..++|..+...- .+.-..+|.+.. ++++|. ++.||.+.|. +-..||+-+.-. +
T Consensus 246 ~p~~ghL~w~~~~g~t~~vy~---~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~---~ 319 (354)
T KOG4649|consen 246 LPIAGHLLWATQSGTTLHVYL---SPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEA---I 319 (354)
T ss_pred ccccceEEEEecCCcEEEEEe---CcccceeccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEE---e
Confidence 111123478888886665432 111222332222 256666 6799999888 444444432211 1
Q ss_pred ceEEEEEc-C---CCcEEEEEeCCeEEEEeCC
Q 012410 305 TPSAFIFL-Y---ENQLFLTFRNRTVAVWNFR 332 (464)
Q Consensus 305 ~v~sv~Fs-p---dgqllaS~sD~TIklWd~~ 332 (464)
...+=+|| | ||++|+.+.|.-|+-||+.
T Consensus 320 el~~eIFsSPvii~grl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 320 ELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLD 351 (354)
T ss_pred ecCcccccCCeEEccEEEEEEccCeEEEEecc
Confidence 11112344 3 7998887779999999984
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.13 Score=59.68 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=65.1
Q ss_pred CeEEEEeCCCeEEEEECCCCcE-EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCC
Q 012410 274 EKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~-l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~ 350 (464)
.-+++++..|.+-+-|+.+.-+ +..-..-+.+|.+++|+.||.+++.|- +|-|++||. +++.++.+..|..++..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~-- 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG-- 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce--
Confidence 4566666667777766433222 011111236899999999999999988 999999999 69999999999887543
Q ss_pred eeEEEECCCCCEEEEEe
Q 012410 351 TNNIYITSDQDLIISYC 367 (464)
Q Consensus 351 v~svafSpDg~~LaSgs 367 (464)
|--+-.+.++..+.++.
T Consensus 178 vi~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSD 194 (1206)
T ss_pred EEEEEEeCCCcEEEEcc
Confidence 44555566777777764
No 371
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.52 E-value=0.07 Score=60.67 Aligned_cols=88 Identities=16% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCeEEEEeCCCceEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 323 NRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 323 D~TIklWd~~Ge~l~--tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
-|.|.|+--+||.-+ +..-| +.|++|+|..-.||+|=. -|-+.+|+..+.+--..-..|
T Consensus 40 ~GSVtIfadtGEPqr~Vt~P~h--------atSLCWHpe~~vLa~gwe-----------~g~~~v~~~~~~e~htv~~th 100 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQRDVTYPVH--------ATSLCWHPEEFVLAQGWE-----------MGVSDVQKTNTTETHTVVETH 100 (1416)
T ss_pred CceEEEEecCCCCCccccccee--------hhhhccChHHHHHhhccc-----------cceeEEEecCCceeeeeccCC
Confidence 468888876888544 22233 568999999999999865 788999997666554444556
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.. +|.-|.|||||..|.|+..=|.|++|.
T Consensus 101 ~a----------------------------------~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 101 PA----------------------------------PIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred CC----------------------------------CceeEEecCCCCeEEEcCCCceeEEEE
Confidence 54 888999999999999999999999996
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.37 E-value=0.93 Score=52.20 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=84.2
Q ss_pred eCCCeEEEEECCCCcEEEEcccCCCc-eEEEEEcC--------CCcEEEEEeCCeEEEEeCC--CceEEEeccCCCCcCC
Q 012410 280 QENENLQILDVRNAELMEVSRTEFMT-PSAFIFLY--------ENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPD 348 (464)
Q Consensus 280 s~D~tIkIWDv~tg~~l~~l~gh~~~-v~sv~Fsp--------dgqllaS~sD~TIklWd~~--Ge~l~tl~gH~~~~~~ 348 (464)
.....|.--|+.+|+.++....|.+. |.. |-| ..+.|+.-++..+--||.+ |..+..-+.|+- ...
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~ 577 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSK 577 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccC
Confidence 46688888999999999998888765 444 444 3467777778889999973 643333233332 222
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
-+..++|-+.+|.+. -||. +|-|||+|- .|+- -..|.|-..
T Consensus 578 ~~Fs~~aTt~~G~ia-vgs~-----------~G~IRLyd~-~g~~AKT~lp~lG~------------------------- 619 (794)
T PF08553_consen 578 NNFSCFATTEDGYIA-VGSN-----------KGDIRLYDR-LGKRAKTALPGLGD------------------------- 619 (794)
T ss_pred CCceEEEecCCceEE-EEeC-----------CCcEEeecc-cchhhhhcCCCCCC-------------------------
Confidence 335678888888754 4665 999999994 4432 222223222
Q ss_pred cccccccccCEEEEEEcCCCCEEEEee
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
+|..|..+.||++|+...
T Consensus 620 ---------pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 620 ---------PIIGIDVTADGKWILATC 637 (794)
T ss_pred ---------CeeEEEecCCCcEEEEee
Confidence 899999999999877554
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.23 Score=54.96 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=55.7
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceE-EEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-AFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~-sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.++.+.++|- -+.||..-++|.|-|.-+. -+-+-++..|...+. +++|-|||++||.|= ||||+|-|+ .|..+..
T Consensus 22 ~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4466667663 3455556688877776654 555555554554555 999999999999998 999999999 6888876
Q ss_pred e
Q 012410 339 F 339 (464)
Q Consensus 339 l 339 (464)
+
T Consensus 100 ~ 100 (665)
T KOG4640|consen 100 F 100 (665)
T ss_pred c
Confidence 4
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.02 E-value=3.4 Score=42.56 Aligned_cols=144 Identities=12% Similarity=0.069 Sum_probs=75.5
Q ss_pred CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 281 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
..+.|.-||..+|+.... ....+......+..+|+++++ +.-+.++++ +|..++.+..-..-.+...-|.+.+.||
T Consensus 45 ~~~~i~r~~~~~g~~~~~-~~p~~~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 45 LGGRIHRLDPETGKKRVF-PSPGGFSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred CCCeEEEecCCcCceEEE-ECCCCcccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 567777888777754332 222222334446666666544 345678887 4665333322111111122578999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEE
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 439 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 439 (464)
|.+-+.-......+...+-.-|+|.--|. .|+-++.+.+|=. .=.
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~----------------------------------~~N 166 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT----------------------------------IPN 166 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE----------------------------------ecC
Confidence 99888643200000000111233333332 4555555544321 234
Q ss_pred EEEEcCCCCEEEEeeCC-CcEEec
Q 012410 440 SLFYDEERNEIYTGNRH-GLVHVW 462 (464)
Q Consensus 440 slafspDg~~LaSgs~D-gtVrlW 462 (464)
+|+|||||++||-+-.. +.|+-+
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEE
Confidence 69999999998877553 555544
No 375
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.58 E-value=5.5 Score=40.98 Aligned_cols=100 Identities=18% Similarity=0.297 Sum_probs=62.6
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE---EEEc----ccCCCceEEEEEcCC----CcEEEEEe-C-------
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVS----RTEFMTPSAFIFLYE----NQLFLTFR-N------- 323 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~---l~~l----~gh~~~v~sv~Fspd----gqllaS~s-D------- 323 (464)
-++++|.|+ +.++++...|.|++.+ ..|.. +..+ .........++|.|+ +.+.++.+ .
T Consensus 4 P~~~a~~pd--G~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPD--GRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETT--SCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCC--CcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 378999995 7888888899999999 66664 2222 233456789999995 78887776 3
Q ss_pred -CeEEEEeCC-C--c------eEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 324 -RTVAVWNFR-G--E------LVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 324 -~TIklWd~~-G--e------~l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
..|.-|..+ + . ++..+..+ ...|. ...++|.|||.+.++-+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~---g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHN---GGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS----EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCC---CccccCCCCCcEEEEeCC
Confidence 244444442 3 1 23333331 12232 568999999999988875
No 376
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.47 E-value=0.25 Score=55.20 Aligned_cols=93 Identities=10% Similarity=0.027 Sum_probs=56.7
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC----CceEEEeccCCCCc
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GELVTSFEDHLLWH 346 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~----Ge~l~tl~gH~~~~ 346 (464)
.+.|+.|+.-|.+.|++-.+|+.+..-. +-...+.+...|++..++|.|+ .+-|-+.-+. +++...=..|..
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~-- 122 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS-- 122 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccccc--
Confidence 4677779999999999966676655433 2223455566788888888888 7777666552 222221112211
Q ss_pred CCCCeeEEEECCCCCEEEEEe
Q 012410 347 PDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs 367 (464)
..|.|..++||+||..+.||-
T Consensus 123 ~~~rVTal~Ws~~~~k~ysGD 143 (726)
T KOG3621|consen 123 HKCRVTALEWSKNGMKLYSGD 143 (726)
T ss_pred CCceEEEEEecccccEEeecC
Confidence 112366666666666666663
No 377
>PRK10115 protease 2; Provisional
Probab=93.31 E-value=18 Score=41.21 Aligned_cols=188 Identities=8% Similarity=0.032 Sum_probs=99.3
Q ss_pred EEEEeCCCCcEEEEecC-----CCcEEEEeCCCCeEEE-EecCCCEeEEEEeCCC--------------ceeEEEEEcCC
Q 012410 190 FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKHVQEIKIRSSS--------------HVPLKILSIED 249 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~-----D~tiKlWdl~tg~~l~-tl~~~~V~~Vafs~s~--------------d~tIklWdi~t 249 (464)
.+.+| |||+.||.+.. ..++++=|+.+|..+- .+.... ..++|++++ ...|..+++.|
T Consensus 131 ~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 131 GMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 67886 89999997633 4478888999887542 222111 346665421 13577788888
Q ss_pred C--cEEEEEeeCCcceeeEEEEccCCCeEEEEe---CCCeEEEEEC--CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 250 G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 250 G--~~l~tl~~~~~~~~~V~F~~~~~~~lla~s---~D~tIkIWDv--~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
+ +-...++......+-..+.+.++..+++.+ .+..+.+++. .+++....+.........+. ...+.+++...
T Consensus 209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn 287 (686)
T PRK10115 209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSN 287 (686)
T ss_pred ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEc
Confidence 8 333344422122231222333556666643 5678899994 34553333333333333333 44456655554
Q ss_pred -C-CeEEEEe--CC--CceEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEE
Q 012410 323 -N-RTVAVWN--FR--GELVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCL 394 (464)
Q Consensus 323 -D-~TIklWd--~~--Ge~l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl 394 (464)
+ ..-+|.. +. ++ .+++-.| ..+ .+..+.++ .+.+++++.. ++.-+|+-+. .++.+
T Consensus 288 ~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~----~i~~~~~~-~~~l~~~~~~-----------~g~~~l~~~~~~~~~~ 350 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQ-WEELIPPRENI----MLEGFTLF-TDWLVVEERQ-----------RGLTSLRQINRKTREV 350 (686)
T ss_pred CCCCCceEEEecCCCccc-CeEEECCCCCC----EEEEEEEE-CCEEEEEEEe-----------CCEEEEEEEcCCCCce
Confidence 2 2445554 32 22 2344444 333 27778887 3466666664 5555555332 24445
Q ss_pred EEE
Q 012410 395 AKI 397 (464)
Q Consensus 395 ~tl 397 (464)
..|
T Consensus 351 ~~l 353 (686)
T PRK10115 351 IGI 353 (686)
T ss_pred EEe
Confidence 554
No 378
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.29 E-value=3.3 Score=44.96 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=47.0
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc--eEEEeccCCCCcCCCCeeEEEECCCC-------CEEE
Q 012410 296 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQ-------DLII 364 (464)
Q Consensus 296 l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge--~l~tl~gH~~~~~~~~v~svafSpDg-------~~La 364 (464)
++++......+|+++|.|||++|++-. .+.|++++-. +. .+..+.+-..-....-...|+|+||= .+-+
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 344555567899999999999999998 6999999863 32 33333211000001126789999984 3556
Q ss_pred EEec
Q 012410 365 SYCK 368 (464)
Q Consensus 365 Sgs~ 368 (464)
+++.
T Consensus 102 syt~ 105 (454)
T TIGR03606 102 SYTY 105 (454)
T ss_pred EEec
Confidence 6654
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.27 E-value=10 Score=39.04 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 304 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
..+.++.-++||+++|.++ -.-.+-||--..--+...--... .|.++.|+||+.+.+.+ . .|-
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~----riq~~gf~~~~~lw~~~-~-----------Gg~ 208 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR----RIQSMGFSPDGNLWMLA-R-----------GGQ 208 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-----EEEEEE-TTS-EEEEE-T-----------TTE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccc----eehhceecCCCCEEEEe-C-----------CcE
Confidence 5678888999999999998 55557888422222222211222 28999999999987765 3 788
Q ss_pred EEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 383 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
|+.-+ ...-..+++.+.. | ...+.. .+..|+|.|+++..|+|+....+
T Consensus 209 ~~~s~--~~~~~~~w~~~~~-~-----~~~~~~---------------------~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 209 IQFSD--DPDDGETWSEPII-P-----IKTNGY---------------------GILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp EEEEE---TTEEEEE---B--T-----TSS--S----------------------EEEEEESSSS-EEEEESTT-EE
T ss_pred EEEcc--CCCCccccccccC-C-----cccCce---------------------eeEEEEecCCCCEEEEeCCccEE
Confidence 88877 1222334433221 0 000111 58899999999888877765433
No 380
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.02 E-value=6.9 Score=38.77 Aligned_cols=100 Identities=7% Similarity=-0.049 Sum_probs=57.4
Q ss_pred ceeeEEEEccCCCeEEEEe---CCCeEEEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe-C-CCc
Q 012410 262 RNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN-F-RGE 334 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s---~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd-~-~Ge 334 (464)
.+.+++.+++ +..+++-. ....+.++. .+. ....+.+. .+..-.|+++|.+.+... +...+++. . +|+
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEc--CCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 3466666663 44444422 333444443 333 33333444 455667999999888877 77778884 2 454
Q ss_pred eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 335 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 335 ~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
....--+.... .. .|.++.+||||..+|--..
T Consensus 100 ~~~~~v~~~~~-~~-~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 100 GEPVEVDWPGL-RG-RITALRVSPDGTRVAVVVE 131 (253)
T ss_pred ceeEEeccccc-CC-ceEEEEECCCCcEEEEEEe
Confidence 32211111100 00 1889999999999998764
No 381
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=0.82 Score=52.33 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=80.5
Q ss_pred EcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 311 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+++.+..+|-|+ ||.|-+.|-+=++++.|..|...+ |..++...+..+|+|-..++ + ++-.+|||||+.
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~si----v~~L~~~~~~~~L~sv~Ed~---~---~np~llkiw~le 100 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSI----VQFLYILNKQNFLFSVGEDE---Q---GNPVLLKIWDLE 100 (933)
T ss_pred EcCCCceEEEeeccccEEEecccceeeehheecchhh----hhHhhcccCceEEEEEeecC---C---CCceEEEEeccc
Confidence 788888888888 998877776666778888877652 56677777778999988621 0 112289999985
Q ss_pred C------CeEEEEE--ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 390 T------GKCLAKI--NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 390 t------G~cl~tl--~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
. -+|+.++ .+|.+ | .+. ..+.+|+.|.|-+++|.|=.||+|-+
T Consensus 101 k~~~n~sP~c~~~~ri~~~~n-p--~~~--------------------------~p~s~l~Vs~~l~~Iv~Gf~nG~V~~ 151 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKN-P--TNP--------------------------SPASSLAVSEDLKTIVCGFTNGLVIC 151 (933)
T ss_pred ccCCCCCcceeeeeeeeccCC-C--CCC--------------------------CcceEEEEEccccEEEEEecCcEEEE
Confidence 3 3677433 33333 1 111 17889999999999999999999876
Q ss_pred c
Q 012410 462 W 462 (464)
Q Consensus 462 W 462 (464)
.
T Consensus 152 ~ 152 (933)
T KOG2114|consen 152 Y 152 (933)
T ss_pred E
Confidence 4
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.82 E-value=3.9 Score=42.07 Aligned_cols=154 Identities=10% Similarity=0.136 Sum_probs=96.0
Q ss_pred EEEeCCCCcEEE-EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCc----------eeEEEEEcCCCcEEEEEee
Q 012410 191 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSH----------VPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 191 VaFs~pdGk~La-Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d----------~tIklWdi~tG~~l~tl~~ 258 (464)
-+|..+||++=+ .-+. .|+++..+. ...-..|+|+|..- .-..++|..+++.+.++..
T Consensus 40 saf~~~dgs~g~a~~~e----------aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s 109 (366)
T COG3490 40 SAFDARDGSFGAATLSE----------AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS 109 (366)
T ss_pred eeeeccCCceeEEEEcc----------CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence 467678887643 2333 456664322 23334455555311 2356788888888877641
Q ss_pred C------CcceeeEEEEccCCCeEEEEeCC-----CeEEEEECCCC-cEEEEcccCCCceEEEEEcCCCcEEEEEeCCeE
Q 012410 259 L------LHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTV 326 (464)
Q Consensus 259 ~------~~~~~~V~F~~~~~~~lla~s~D-----~tIkIWDv~tg-~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TI 326 (464)
. .|. .|++ ++..|.+.-.| |.|=|||.+.+ +.+-.+.+|...+-.+.+.+||++++-+. |-|
T Consensus 110 ~~~RHfyGHG----vfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan-GGI 183 (366)
T COG3490 110 QEGRHFYGHG----VFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGI 183 (366)
T ss_pred ccCceeeccc----ccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC-Cce
Confidence 1 233 3667 45555554332 78899998854 24456788988999999999999998765 333
Q ss_pred E--------------------EEeC-CCceEE--Eec--cCCCCcCCCCeeEEEECCCCCEEEE
Q 012410 327 A--------------------VWNF-RGELVT--SFE--DHLLWHPDCNTNNIYITSDQDLIIS 365 (464)
Q Consensus 327 k--------------------lWd~-~Ge~l~--tl~--gH~~~~~~~~v~svafSpDg~~LaS 365 (464)
+ +-|. +|+++. +|. .|.+. |.-+++-+||..++-
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS-----iRHld~g~dgtvwfg 242 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS-----IRHLDIGRDGTVWFG 242 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc-----eeeeeeCCCCcEEEE
Confidence 3 4453 666643 444 33333 888999999987764
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.76 E-value=3.7 Score=40.66 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=63.3
Q ss_pred ceEEEEEcCCCcEEEEEe--CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 305 TPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s--D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
.+.+.+.||||+.+|.-. ++.-.||-. .|+....+++... ..-.|+++|.+.+.... +
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l-------~~PS~d~~g~~W~v~~~-----------~ 86 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSL-------TRPSWDPDGWVWTVDDG-----------S 86 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCcc-------ccccccCCCCEEEEEcC-----------C
Confidence 678899999999887755 555555554 4555555566643 35678999888876543 5
Q ss_pred CeEEEEe-CCCCeEEE-EEccCCCCCCcccccCCCCCCcccccccccccccccccccc-CEEEEEEcCCCCEEEEee
Q 012410 381 GSINVSS-ILTGKCLA-KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGN 454 (464)
Q Consensus 381 gtIklWd-i~tG~cl~-tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~V~slafspDg~~LaSgs 454 (464)
...+++. ..+|+-.. .+.. ..+. .|.+|.+||||..+|--.
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~---------------------------------~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 87 GGVRVVRDSASGTGEPVEVDW---------------------------------PGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred CceEEEEecCCCcceeEEecc---------------------------------cccCCceEEEEECCCCcEEEEEE
Confidence 5566663 33333211 1100 0111 799999999999988555
No 384
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.65 E-value=10 Score=41.23 Aligned_cols=102 Identities=7% Similarity=0.160 Sum_probs=61.9
Q ss_pred cceeeEEEEccCCCeEEEEeC-CCeEEEEECCCCcE--EEEc----cc-CCCceEEEEEcCCC-------cEEEEEe--C
Q 012410 261 HRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAEL--MEVS----RT-EFMTPSAFIFLYEN-------QLFLTFR--N 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~-D~tIkIWDv~tg~~--l~~l----~g-h~~~v~sv~Fspdg-------qllaS~s--D 323 (464)
..-+.++|.|+ +.++++.. .+.|++++-.++.. +..+ .. ....+..++|+||- .+.++-+ +
T Consensus 30 ~~Pw~maflPD--G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLWGPD--NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEEcCC--CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 44599999995 68989886 59999998666542 2111 11 24668899999885 4566642 1
Q ss_pred ------CeEEE--EeCC-C--------ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 324 ------RTVAV--WNFR-G--------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 324 ------~TIkl--Wd~~-G--------e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
..-+| |.++ + +++..+... ..|. -..|+|.|||++.++-++
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~~H~---GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-NDHN---GGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-CCcC---CceEEECCCCcEEEEECC
Confidence 12344 3332 1 122222211 1222 236999999999998765
No 385
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.47 E-value=11 Score=40.31 Aligned_cols=139 Identities=11% Similarity=0.092 Sum_probs=79.9
Q ss_pred CeEEE-EeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceE--EEeccCCCCcC
Q 012410 274 EKLLV-KQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELV--TSFEDHLLWHP 347 (464)
Q Consensus 274 ~~lla-~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l--~tl~gH~~~~~ 347 (464)
+.+++ +....-++-|| .|+. ...-......+.++.|.+||.+++.+.++.+ +|.. .|+.- .+|..-.....
T Consensus 250 G~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~ 326 (398)
T PLN00033 250 GDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSR 326 (398)
T ss_pred CCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCC
Confidence 44444 44444445565 3332 2222333456889999999999998888876 4544 56421 12321111000
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
.-.+.+++|.+|+..+++|. .|.|.... .-|+--...+.-+.
T Consensus 327 ~~~l~~v~~~~d~~~~a~G~------------~G~v~~s~-D~G~tW~~~~~~~~------------------------- 368 (398)
T PLN00033 327 GFGILDVGYRSKKEAWAAGG------------SGILLRST-DGGKSWKRDKGADN------------------------- 368 (398)
T ss_pred CcceEEEEEcCCCcEEEEEC------------CCcEEEeC-CCCcceeEccccCC-------------------------
Confidence 01267899999999999884 68777664 45554443321111
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCcEE
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 460 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~DgtVr 460 (464)
.-...++|.|.++++-.++| .+|.|-
T Consensus 369 ------~~~~ly~v~f~~~~~g~~~G-~~G~il 394 (398)
T PLN00033 369 ------IAANLYSVKFFDDKKGFVLG-NDGVLL 394 (398)
T ss_pred ------CCcceeEEEEcCCCceEEEe-CCcEEE
Confidence 11267789998887766665 456553
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.39 E-value=14 Score=37.50 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=93.2
Q ss_pred CeEEEEec---CCCEeEEEE-eC-------C--CceeEEEEEcCCCcEEEEEeeCCcce--eeEEEEccCCCeEEE-EeC
Q 012410 218 YTMLYSIS---DKHVQEIKI-RS-------S--SHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLV-KQE 281 (464)
Q Consensus 218 g~~l~tl~---~~~V~~Vaf-s~-------s--~d~tIklWdi~tG~~l~tl~~~~~~~--~~V~F~~~~~~~lla-~s~ 281 (464)
++.+.+.+ ..-.|.+.| .. . ....|+.+|++||+.++...-. .+. -.++.. +++|.- .=.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~---~d~l~qLTWk 108 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL---GDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE---TTEEEEEESS
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE---CCEEEEEEec
Confidence 34455555 234677777 32 1 4468999999999998765521 121 333332 244444 447
Q ss_pred CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 282 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
+++.-+||..+-+.+.++.-. ..-|.++ .||+.|..+. ..++..+|. +-+.+.+++-...-.+--.+|-+-+- |
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred CCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 788999999999999876533 3557776 4455444444 778889997 56666655533221111126666664 7
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
|.+.|=-=. ...|-.-|..||+++..+.-
T Consensus 185 G~IyANVW~-----------td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 185 GKIYANVWQ-----------TDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp TEEEEEETT-----------SSEEEEEETTT-BEEEEEE-
T ss_pred CEEEEEeCC-----------CCeEEEEeCCCCeEEEEEEh
Confidence 777765443 33455558889998887743
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.33 E-value=0.38 Score=47.50 Aligned_cols=104 Identities=8% Similarity=0.053 Sum_probs=58.9
Q ss_pred CCeEEEEeCCCeEEEEECCC-CcEEE-EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCC
Q 012410 273 NEKLLVKQENENLQILDVRN-AELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 348 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~t-g~~l~-~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~ 348 (464)
+.++++|..|+.|.+|+... |+... ...+..+...-|.-..++.+..++. |+.|+.|++. ++-+-.--.|..- +
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~- 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-S- 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC-C-
Confidence 36888899999999998541 22111 1112222223333345666777777 9999999984 6665555555421 1
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+.....+.-+..|++. .-|.|..+|.||+.
T Consensus 148 --~e~~ivv~sd~~i~~a---------~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 --GEELIVVGSDEFLKIA---------DTSHDRVLKKWNVE 177 (238)
T ss_pred --cceeEEecCCceEEee---------ccccchhhhhcchh
Confidence 2333334444555554 11236777777763
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.30 E-value=20 Score=41.44 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=90.2
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcce-e------------eEEEEcc-CCCeEEEEeC----------CCeEEEEECCC
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRN-K------------KVDFIEQ-FNEKLLVKQE----------NENLQILDVRN 292 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~-~------------~V~F~~~-~~~~lla~s~----------D~tIkIWDv~t 292 (464)
+.|..|--.|.+||+.+..|... +.+ + .+.-.|. .++.+++++. ++.|+-+|+.|
T Consensus 267 T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 267 TSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred cCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence 46777788899999999877521 111 0 0111110 1467777642 58899999999
Q ss_pred CcEEEEccc------------C-----CCceE-EEEEcCCCcEEEEE------------------e-CCeEEEEeC-CCc
Q 012410 293 AELMEVSRT------------E-----FMTPS-AFIFLYENQLFLTF------------------R-NRTVAVWNF-RGE 334 (464)
Q Consensus 293 g~~l~~l~g------------h-----~~~v~-sv~FspdgqllaS~------------------s-D~TIklWd~-~Ge 334 (464)
|+++=.+.. + ...+| ..++.|+..++.-. . .++|---|. +||
T Consensus 346 Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 346 GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence 998754321 0 01121 22344443332221 1 235556677 688
Q ss_pred eEEEec--cCCCCcCCCCeeEEE--ECC-CCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 335 LVTSFE--DHLLWHPDCNTNNIY--ITS-DQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 335 ~l~tl~--gH~~~~~~~~v~sva--fSp-Dg~---~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.+-.++ .|..|..|..-..+- +.- ||+ .++.+++ +|.+.+.|-.||+.|...+.
T Consensus 426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTK-----------QGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECC-----------CCEEEEEECCCCCEEeecee
Confidence 876665 477776654222222 222 774 7888887 99999999999999987643
No 389
>PRK13684 Ycf48-like protein; Provisional
Probab=92.20 E-value=6.3 Score=40.65 Aligned_cols=60 Identities=7% Similarity=-0.035 Sum_probs=40.8
Q ss_pred CceEEEEEcCCCcEEEEEeCCeEE-EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 304 MTPSAFIFLYENQLFLTFRNRTVA-VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~sD~TIk-lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
..+.++.+.|++.+++.+..|.+. .+|-.|+-.+........ .++++++.|++.+++.|.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~----~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSR----RLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcc----cceeeeEcCCCCEEEEec
Confidence 457888999999998888877653 344345544444333222 278999999999888764
No 390
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=92.05 E-value=6.5 Score=39.28 Aligned_cols=122 Identities=10% Similarity=0.108 Sum_probs=70.5
Q ss_pred EcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCCCceEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCcc
Q 012410 298 VSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 373 (464)
Q Consensus 298 ~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~Ge~l~tl~--gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~ 373 (464)
.+.+-...++.++|.||.. ++|... .+.|--.+.+|+.+++.. |... ...|++.-+|.++++- +
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D------~EgI~y~g~~~~vl~~-E----- 83 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGD------YEGITYLGNGRYVLSE-E----- 83 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SS------EEEEEE-STTEEEEEE-T-----
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCC------ceeEEEECCCEEEEEE-c-----
Confidence 4455555699999999866 454455 777766677899998654 4322 6799999999888864 2
Q ss_pred ccccCCCCeEEEEeCCCC-e--EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 012410 374 QWMEGSAGSINVSSILTG-K--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 450 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG-~--cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L 450 (464)
+++++.+.++... + -.+..+.++- .....+|. .+-.|+|+|.++.|
T Consensus 84 -----r~~~L~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~N~---------------------G~EGla~D~~~~~L 132 (248)
T PF06977_consen 84 -----RDQRLYIFTIDDDTTSLDRADVQKISL-----GFPNKGNK---------------------GFEGLAYDPKTNRL 132 (248)
T ss_dssp -----TTTEEEEEEE----TT--EEEEEEEE--------S---SS-----------------------EEEEEETTTTEE
T ss_pred -----CCCcEEEEEEeccccccchhhceEEec-----ccccCCCc---------------------ceEEEEEcCCCCEE
Confidence 3788988887321 1 1122111110 00011222 67889999999999
Q ss_pred EEeeCCCcEEec
Q 012410 451 YTGNRHGLVHVW 462 (464)
Q Consensus 451 aSgs~DgtVrlW 462 (464)
+.+-+..-.+|+
T Consensus 133 ~v~kE~~P~~l~ 144 (248)
T PF06977_consen 133 FVAKERKPKRLY 144 (248)
T ss_dssp EEEEESSSEEEE
T ss_pred EEEeCCCChhhE
Confidence 988777666654
No 391
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.97 E-value=11 Score=40.30 Aligned_cols=99 Identities=6% Similarity=-0.069 Sum_probs=60.7
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcE-----EEEcc-c-CCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceE
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAEL-----MEVSR-T-EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELV 336 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~-----l~~l~-g-h~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l 336 (464)
..+.|.++ +.++..+.++.+ +|....|+. ..... . -...+.++.|.+|++++++|.+|.|....-.|+--
T Consensus 284 ~~v~~~~d--g~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW 360 (398)
T PLN00033 284 QNMGWRAD--GGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSW 360 (398)
T ss_pred eeeeEcCC--CCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcce
Confidence 45556543 445555555554 333344431 22111 1 12357889999999999999999887776567765
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
+....- ..++ .+.++|+|.++++..|+|.
T Consensus 361 ~~~~~~-~~~~-~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 361 KRDKGA-DNIA-ANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred eEcccc-CCCC-cceeEEEEcCCCceEEEeC
Confidence 544311 1111 1367999999999999884
No 392
>PRK13684 Ycf48-like protein; Provisional
Probab=91.95 E-value=9.7 Score=39.30 Aligned_cols=99 Identities=7% Similarity=-0.046 Sum_probs=59.9
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEE-EECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEE
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQI-LDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTS 338 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkI-WDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~t 338 (464)
.+..+++.+. +.+++.+..|.+.. +| ..|+ -.....+-...+.++++.|++++++.+..+.+.+=.. .|+-.+.
T Consensus 174 ~~~~i~~~~~--g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 174 VVRNLRRSPD--GKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSK 250 (334)
T ss_pred eEEEEEECCC--CeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCcccc
Confidence 3466777663 55666666666543 33 2233 2222233346788999999999998887888765333 4654333
Q ss_pred eccC---CCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 339 FEDH---LLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 339 l~gH---~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
..-+ ..+ .+.+++|.|++.+++.|.
T Consensus 251 ~~~~~~~~~~----~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 251 PIIPEITNGY----GYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ccCCcccccc----ceeeEEEcCCCCEEEEcC
Confidence 2222 112 267899999999888763
No 393
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.70 E-value=3.8 Score=48.72 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=90.4
Q ss_pred cceeeh-----hccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC
Q 012410 98 RDIVFA-----LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (464)
Q Consensus 98 g~~l~~-----l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~ 172 (464)
|+++|+ ...-..+++||++ |. |...+......-.++++-|-|..+|++--..+++ .|.+.. +.|-
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~-------~IvffE-rNGL 276 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS-------DIVFFE-RNGL 276 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCC-------cEEEEe-cCCc
Confidence 666666 3333689999866 43 4444455566778999999999999977666665 444433 3443
Q ss_pred CCC----cccceeeccccCceEEEEeCCCCcEEEE---ecCCCcEEEEeCCCCeEE--EEe--cCCCEeEEEEeCCCcee
Q 012410 173 PDS----GFALFESESLKWPGFVEFDDVNGKVLTY---SAQDSIYKVFDLKNYTML--YSI--SDKHVQEIKIRSSSHVP 241 (464)
Q Consensus 173 ~~~----~~~l~~~~~~~~~~~VaFs~pdGk~LaS---gs~D~tiKlWdl~tg~~l--~tl--~~~~V~~Vafs~s~d~t 241 (464)
..+ .+++-+.+ ...++|+ .|+.+||. ......|+||-+.||.-- ..+ ++... +.++|....+
T Consensus 277 ~hg~f~l~~p~de~~----ve~L~Wn-s~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~ 349 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKE----VEELAWN-SNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKT 349 (1265)
T ss_pred cccccccCCcccccc----hheeeec-CCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCcee
Confidence 322 33333322 3379997 79999997 666777999999988742 122 23323 6677777788
Q ss_pred EEEEEcCCCcEE
Q 012410 242 LKILSIEDGTVL 253 (464)
Q Consensus 242 IklWdi~tG~~l 253 (464)
+.+|- +.|+.+
T Consensus 350 L~v~~-~sG~~~ 360 (1265)
T KOG1920|consen 350 LHVLR-ESGQRL 360 (1265)
T ss_pred EEEEe-cCCcEE
Confidence 88876 567654
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=0.87 Score=53.29 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=49.5
Q ss_pred EEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 318 FLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 318 laS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+|-++ -|-|-+-|.+|.+-. | |.+-.....|.+++|+-||.+++-|-. +|-|.+||+.+++.++.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~-~--~~ne~v~~~Vtsvafn~dg~~l~~G~~-----------~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGP-L--HQNERVQGPVTSVAFNQDGSLLLAGLG-----------DGHVTVWDMHRAKILKV 167 (1206)
T ss_pred EEEEcCchhhhhhhhhcccch-h--hcCCccCCcceeeEecCCCceeccccC-----------CCcEEEEEccCCcceee
Confidence 44444 555666666655321 1 222111112899999999999998865 99999999999999999
Q ss_pred EccCCC
Q 012410 397 INATNC 402 (464)
Q Consensus 397 l~gh~~ 402 (464)
|.-|..
T Consensus 168 i~e~~a 173 (1206)
T KOG2079|consen 168 ITEHGA 173 (1206)
T ss_pred eeecCC
Confidence 988775
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.23 E-value=18 Score=36.59 Aligned_cols=172 Identities=12% Similarity=0.088 Sum_probs=106.3
Q ss_pred EEEEeCCCCcEEEEecCCC--cEEEEeCCCCeEEEEec--CC-CEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDS--IYKVFDLKNYTMLYSIS--DK-HVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~--tiKlWdl~tg~~l~tl~--~~-~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~ 257 (464)
.++|. .||.++-|.+.-+ .++.+|++||+.+.... .. -=..|++-.+ ..+..-++|.+|-+.+.+|.
T Consensus 49 GL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 49 GLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 68885 5888888877744 89999999999875433 11 1123333222 35678899999999999998
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC--CC---ceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FM---TPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh--~~---~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
.. ..=|.++. +++.|+.+....+|..+|..+.+.++.+.-. .. .+..+-+ -+|.+.|=-- ...|-.=|.
T Consensus 128 y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 128 YP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp -S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEEETTSSEEEEEET
T ss_pred cC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEEeCCCCeEEEEeC
Confidence 54 34488884 5677777767789999999998876644321 11 2333434 2788887776 556666787
Q ss_pred -CCceEEEec-----cC----CCCc-CCCCeeEEEECCCCCEEEEEe
Q 012410 332 -RGELVTSFE-----DH----LLWH-PDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 332 -~Ge~l~tl~-----gH----~~~~-~~~~v~svafSpDg~~LaSgs 367 (464)
+|+++..+. .+ .... .+-..|.||+.|+++.|.--+
T Consensus 203 ~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 203 ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 799887553 10 0000 012378999988766554433
No 396
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.34 E-value=0.54 Score=51.30 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=31.9
Q ss_pred eeEEEECC----CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 351 TNNIYITS----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 351 v~svafSp----Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+.++++++ +..+|++-|. |+++||||+.|++|++++.-.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~-----------D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSR-----------DHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEET-----------TSEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeccc
Confidence 56777777 8899999987 999999999999999887544
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.15 E-value=11 Score=38.83 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=69.8
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCe-EEEEECCCCcEEEEcccCCCceE--EEEEcCCCcEEEEEe-C
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN-LQILDVRNAELMEVSRTEFMTPS--AFIFLYENQLFLTFR-N 323 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~t-IkIWDv~tg~~l~~l~gh~~~v~--sv~FspdgqllaS~s-D 323 (464)
+.|+|+....-. .+-..++|+|-..-.++.+-.=|| ..++|..+++.+.++....+.-. -=.|||||.+|-..- |
T Consensus 56 eaGk~v~~~~lp-aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 56 EAGKIVFATALP-ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred cCCceeeeeecc-cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 358887655411 233455565543333333433333 45889888887776543211100 014999999987654 3
Q ss_pred -----CeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 324 -----RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 324 -----~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
|.|-|+|++ =+.+-.|..|-.- --.+.+.+||.+|+-+.
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiG-----pHev~lm~DGrtlvvan 180 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIG-----PHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcC-----cceeEEecCCcEEEEeC
Confidence 589999985 2345577787764 34688999999999864
No 398
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.02 E-value=25 Score=36.08 Aligned_cols=64 Identities=6% Similarity=0.214 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCcEEEEEe-C------CeEEEEeCCCceEEEec---cC-------CCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 305 TPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFE---DH-------LLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D------~TIklWd~~Ge~l~tl~---gH-------~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
-+.++++.++|.+++|+- + ..|.-.+.+|+.+..+. .. ..+..+-...+++++|||+.|...-
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 355888999999999998 8 78877787899877662 21 3334444578999999999777766
Q ss_pred c
Q 012410 368 K 368 (464)
Q Consensus 368 ~ 368 (464)
+
T Consensus 166 E 166 (326)
T PF13449_consen 166 E 166 (326)
T ss_pred C
Confidence 5
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.86 E-value=27 Score=36.17 Aligned_cols=198 Identities=17% Similarity=0.218 Sum_probs=117.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
+.+ +-++.|||+-++|.++- +. ...-+|--.+|++..+.+|-. +.-|..+++. -+|++.++---|
T Consensus 85 ~~n-vS~LTynp~~rtLFav~----n~------p~~iVElt~~GdlirtiPL~g---~~DpE~Ieyi-g~n~fvi~dER~ 149 (316)
T COG3204 85 TAN-VSSLTYNPDTRTLFAVT----NK------PAAIVELTKEGDLIRTIPLTG---FSDPETIEYI-GGNQFVIVDERD 149 (316)
T ss_pred ccc-ccceeeCCCcceEEEec----CC------CceEEEEecCCceEEEecccc---cCChhHeEEe-cCCEEEEEehhc
Confidence 445 99999999999999843 33 345566668999987766544 3556689997 688888887778
Q ss_pred CcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEE
Q 012410 208 SIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 287 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkI 287 (464)
+++-+..+.....+..+.. .+ |.| |. ..+....-..+|+.|+ ++.+.+.-|-..++|
T Consensus 150 ~~l~~~~vd~~t~~~~~~~-----~~--------i~L-----~~----~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I 206 (316)
T COG3204 150 RALYLFTVDADTTVISAKV-----QK--------IPL-----GT----TNKKNKGFEGLAWDPV-DHRLFVAKERNPIGI 206 (316)
T ss_pred ceEEEEEEcCCccEEeccc-----eE--------Eec-----cc----cCCCCcCceeeecCCC-CceEEEEEccCCcEE
Confidence 8777776654333222110 01 111 11 1110122256788885 566777777778888
Q ss_pred EECCCCc-E--EEEcccCCC-------ceEEEEEcCCCcEEEEEe--CCeEEEEeCCCceEEEeccCCCCcCC----CCe
Q 012410 288 LDVRNAE-L--MEVSRTEFM-------TPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPD----CNT 351 (464)
Q Consensus 288 WDv~tg~-~--l~~l~gh~~-------~v~sv~FspdgqllaS~s--D~TIklWd~~Ge~l~tl~gH~~~~~~----~~v 351 (464)
+.+..+. . ++...+++. -|+++.|.+....|+.=| ++.+---|.+|+.+..+.-+..++.- -.-
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqa 286 (316)
T COG3204 207 FEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQA 286 (316)
T ss_pred EEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCc
Confidence 7766544 2 233333332 366777886555444444 77777777789876655543333210 012
Q ss_pred eEEEECCCCCEE
Q 012410 352 NNIYITSDQDLI 363 (464)
Q Consensus 352 ~svafSpDg~~L 363 (464)
..|+.-++|.+-
T Consensus 287 EGiamDd~g~lY 298 (316)
T COG3204 287 EGIAMDDDGNLY 298 (316)
T ss_pred ceeEECCCCCEE
Confidence 356666655543
No 400
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.66 E-value=31 Score=36.79 Aligned_cols=183 Identities=13% Similarity=0.162 Sum_probs=97.3
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--C--------CCEeEEEEeC-----CCceeEEEEE-cCC
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D--------KHVQEIKIRS-----SSHVPLKILS-IED 249 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~--------~~V~~Vafs~-----s~d~tIklWd-i~t 249 (464)
+-+.+++.|+ =| ++|-|.+|+++.|-|+.....++.-. + ..|..+.|+. +....+.+|- ...
T Consensus 87 g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 87 GPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 4455788973 45 89999999999999999988888633 2 3577888863 3445688886 556
Q ss_pred CcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCe--EEEEECCCCcE-EEEc---cc--CCCceEEEEEcCCCcEEE
Q 012410 250 GTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENEN--LQILDVRNAEL-MEVS---RT--EFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 250 G~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~t--IkIWDv~tg~~-l~~l---~g--h~~~v~sv~Fspdgqlla 319 (464)
|+++. |+- ....-+.|.|... . ....+.. |...|..+|+. ..+. ++ ....+ ..+++
T Consensus 165 G~v~~-fkIlp~~~g~f~v~~~~~----~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i--------~g~vV 230 (395)
T PF08596_consen 165 GNVLT-FKILPSSNGRFSVQFAGA----T-TNHDSPILSIIPINADTGESALATISAMQGLSKGISI--------PGYVV 230 (395)
T ss_dssp SEEEE-EEEEE-GGG-EEEEEEEE----E---SS----EEEEEETTT--B-B-BHHHHHGGGGT------------EEEE
T ss_pred CCEEE-EEEecCCCCceEEEEeec----c-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc--------CcEEE
Confidence 76553 321 0112255555331 1 1112222 23345566652 2221 11 00111 12455
Q ss_pred EEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEE-----CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 320 TFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYI-----TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 320 S~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svaf-----SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
..++..|||... ++++.+.......- ...+.+ ...+..|++-.. +|.|++..+..=+-
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~~~~-----~~~~~vv~~~~~~~~~~Lv~l~~-----------~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDDPFL-----CSSASVVPTISRNGGYCLVCLFN-----------NGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS-EE-----EEEEEEEEEE-EEEEEEEEEEET-----------TSEEEEEETTT--E
T ss_pred EEcccceEEEeCCCCcccceeeccccc-----cceEEEEeecccCCceEEEEEEC-----------CCcEEEEECCCchH
Confidence 666888999998 67776533322111 344555 346778888775 99999999988777
Q ss_pred EEEEccC
Q 012410 394 LAKINAT 400 (464)
Q Consensus 394 l~tl~gh 400 (464)
+..++-.
T Consensus 295 i~~~~l~ 301 (395)
T PF08596_consen 295 IKSVSLP 301 (395)
T ss_dssp EEEEE-S
T ss_pred hhcccCC
Confidence 7766554
No 401
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.51 E-value=8.2 Score=38.22 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=93.9
Q ss_pred EEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEec-C-------------CCEeEEEEeCCCceeEEEEEcCCCcEE
Q 012410 190 FVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS-D-------------KHVQEIKIRSSSHVPLKILSIEDGTVL 253 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~-~-------------~~V~~Vafs~s~d~tIklWdi~tG~~l 253 (464)
.++.. ||.+|.|.+. -+-|++|||.+|+.+.+-+ + +.|+.+.+ .++---..|..|=+|+
T Consensus 50 GL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~l 124 (262)
T COG3823 50 GLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEEL 124 (262)
T ss_pred ceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhh
Confidence 45563 7788887766 4579999999999876432 1 12333222 2334445677777777
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE----cccCCCceEEEEE--cCCCcEEEEEe-CCeE
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV----SRTEFMTPSAFIF--LYENQLFLTFR-NRTV 326 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~----l~gh~~~v~sv~F--spdgqllaS~s-D~TI 326 (464)
..+... +.=|.++. ++..|+.+...-+++.-|.++-..+.+ ..|- +|.-+-= -=||.+.|--- +..|
T Consensus 125 g~~~y~-GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~--pv~~LNELE~VdG~lyANVw~t~~I 198 (262)
T COG3823 125 GRFSYE-GEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV--PVSKLNELEWVDGELYANVWQTTRI 198 (262)
T ss_pred cccccC-Ccceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCe--ecccccceeeeccEEEEeeeeecce
Confidence 777643 33366653 445666666667888777777554332 2221 1111100 02666676665 5556
Q ss_pred EEEeC-CCceEEEec------------cCCCCcCCCCeeEEEECCCC-CEEEEE
Q 012410 327 AVWNF-RGELVTSFE------------DHLLWHPDCNTNNIYITSDQ-DLIISY 366 (464)
Q Consensus 327 klWd~-~Ge~l~tl~------------gH~~~~~~~~v~svafSpDg-~~LaSg 366 (464)
..-|. +|+.+...+ .|.+- .|.||+-|++ +++++|
T Consensus 199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv-----lNGIA~~~~~~r~~iTG 247 (262)
T COG3823 199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV-----LNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEcCCCCcEEEEEEccCCchhcCcccccccc-----ccceeecCcCCeEEEec
Confidence 56666 588776544 23222 6889999998 455554
No 402
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.30 E-value=33 Score=36.54 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=109.4
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec----------------CCCEeEEEEe--CC---CceeEEEEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS----------------DKHVQEIKIR--SS---SHVPLKILS 246 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~----------------~~~V~~Vafs--~s---~d~tIklWd 246 (464)
..|.|. ++-.-||-|-..|.|=||.....+.-. ... ...+.+|.=. |+ +-.|+-+.+
T Consensus 5 ~~vs~a-~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 5 THVSFA-PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEE-TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEec-CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 368887 565567778888999888754322110 000 0111111110 11 123444444
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE--ccc------CCCceEEEEEc---C--
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRT------EFMTPSAFIFL---Y-- 313 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~--l~g------h~~~v~sv~Fs---p-- 313 (464)
... ..+..++.+.- |.+++|.+||++-|.|++.-..+.. +.. ....|.++-|+ +
T Consensus 84 ~~~-----------g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 84 AKQ-----------GPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp --S------------SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred ccC-----------CcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 443 45566666543 8999999999999999988776643 333 23457777776 2
Q ss_pred CC---cEEEEEe-CCeEEEEeC--C--CceEEEeccCCCCcCCCCeeEEEECCCC---------------------CEEE
Q 012410 314 EN---QLFLTFR-NRTVAVWNF--R--GELVTSFEDHLLWHPDCNTNNIYITSDQ---------------------DLII 364 (464)
Q Consensus 314 dg---qllaS~s-D~TIklWd~--~--Ge~l~tl~gH~~~~~~~~v~svafSpDg---------------------~~La 364 (464)
|+ -+++.|. .|++.++.+ . |.....+.+...-..+..+.-..|..+. .+++
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 33 4566776 888888875 2 5444444444311111112233353331 1233
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEE-
Q 012410 365 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY- 443 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf- 443 (464)
..+ +..||+....++++.++.....- ...++.|
T Consensus 231 vvS------------e~~irv~~~~~~k~~~K~~~~~~----------------------------------~~~~~~vv 264 (395)
T PF08596_consen 231 VVS------------ESDIRVFKPPKSKGAHKSFDDPF----------------------------------LCSSASVV 264 (395)
T ss_dssp EE-------------SSEEEEE-TT---EEEEE-SS-E----------------------------------EEEEEEEE
T ss_pred EEc------------ccceEEEeCCCCcccceeecccc----------------------------------ccceEEEE
Confidence 322 67899999999998776652211 2233344
Q ss_pred ----cCCCCEEEEeeCCCcEEecc
Q 012410 444 ----DEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 444 ----spDg~~LaSgs~DgtVrlWd 463 (464)
...+..|++=..||.|++..
T Consensus 265 ~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 265 PTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp EEE-EEEEEEEEEEETTSEEEEEE
T ss_pred eecccCCceEEEEEECCCcEEEEE
Confidence 34677888888999998864
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.18 E-value=0.95 Score=33.83 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceE
Q 012410 304 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 336 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l 336 (464)
..|..+.|+|...+||.+. ||.|-|+.++|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 4588899999999999999 99999999887754
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.05 E-value=3.2 Score=40.47 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=56.6
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE-------cc-------cCCCceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------SR-------TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-------l~-------gh~~~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
+.|....+..+++=..+|.+.+||+.+++++.. +. .....|.++.++.+|.-+++.+|+..=.||.
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 334443567788888999999999999997642 22 3446788888899999999999888889997
Q ss_pred CCceEEEecc
Q 012410 332 RGELVTSFED 341 (464)
Q Consensus 332 ~Ge~l~tl~g 341 (464)
+=+|-..+.+
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 7555444433
No 405
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.34 E-value=0.99 Score=33.74 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=29.5
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
|..+.|+|..++||-++. ||.|-|+.+ +||.+.
T Consensus 14 v~~~~w~P~mdLiA~~t~-----------~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTE-----------DGEVLVYRL-NWQRIW 46 (47)
T ss_pred EEEEEECCCCCEEEEEEC-----------CCeEEEEEC-CCcCcc
Confidence 889999999999999987 999999998 887653
No 406
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.33 E-value=3.3 Score=44.47 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=64.7
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC---------------
Q 012410 297 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD--------------- 359 (464)
Q Consensus 297 ~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD--------------- 359 (464)
..|....-...+++.+|++++.|... =|-|-|+|+ +|..++.++|-.+-. | -|--...+.
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c-~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--C-GWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--E-EEEEeecccccccccccccCCCCc
Confidence 34555555677899999999988876 778999999 799999888865521 1 011112221
Q ss_pred -CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 360 -QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 360 -g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
..+|+-+.. .-|.|-||++++|..++.++--
T Consensus 378 ~~l~LvIyap----------rRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 378 FALFLVIYAP----------RRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred ceEEEEEEec----------cCCeEEEEecCCCCEEEEEEeC
Confidence 236666653 4799999999999999998653
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.19 E-value=0.2 Score=57.48 Aligned_cols=140 Identities=14% Similarity=0.218 Sum_probs=84.7
Q ss_pred EcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCC--------CeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 311 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDC--------NTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~--------~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|-++.-++-.+- +++|+|-+.+-.+..-|.+|..|+.|- .|- ..||||+.+|.+|. ||
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~--~lSpDGtv~a~a~~-----------dG 257 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLA--SLSPDGTVFAWAIS-----------DG 257 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhhe--eeCCCCcEEEEeec-----------CC
Confidence 345555555555 889999887544446777899885432 111 26999999999987 99
Q ss_pred eEEEEeCC-C----CeEEEEEccCCCCCCcc-------cccCC-CC---CCcccccccccccccccc-ccc-----cCEE
Q 012410 382 SINVSSIL-T----GKCLAKINATNCSPKVD-------DELGS-SS---TGKSKKLNKSSYIRSTVG-EAL-----EDIT 439 (464)
Q Consensus 382 tIklWdi~-t----G~cl~tl~gh~~~~~~~-------~~~~~-~~---~~~~~~~~~~~~~~~~~~-~~l-----~~V~ 439 (464)
.++.|.+. + -+|+...+.|+..|..- +...+ +- .|-+...+.-.+||...+ +-| +.|.
T Consensus 258 ~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~ 337 (1283)
T KOG1916|consen 258 SVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQ 337 (1283)
T ss_pred ccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceE
Confidence 99999863 3 45899999998644311 11111 11 233455556677777666 333 3444
Q ss_pred EEEEcCCCC------------EEEEeeCCCcEEeccC
Q 012410 440 SLFYDEERN------------EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 440 slafspDg~------------~LaSgs~DgtVrlWd~ 464 (464)
.|+ =|||. .+++-+-|++|++|.|
T Consensus 338 iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 338 IVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred eec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 444 33332 1234556677777765
No 408
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=7.2 Score=43.03 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=82.5
Q ss_pred cCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------------CceeEEEEEcC-CCc-EEEEEeeC---Ccce
Q 012410 205 AQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------------SHVPLKILSIE-DGT-VLKVFYHL---LHRN 263 (464)
Q Consensus 205 s~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------------~d~tIklWdi~-tG~-~l~tl~~~---~~~~ 263 (464)
.+++-+|+ |++.|+-+-... ...|.-+.|.|+ ++..|--||.. .|. .|..-+++ ...+
T Consensus 354 ~~~~l~kl-DIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 354 EQDKLYKL-DIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred CcCcceee-ecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 44666666 888998887665 333666667652 45556666643 233 23222221 1222
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
++.. -.-.+|.|++||.+|-|||+| +.|.--+ .+.|-...|.-|.-+.||+.|+..++.++-|-+.
T Consensus 433 Fsc~-aTT~sG~IvvgS~~GdIRLYd-ri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 433 FSCF-ATTESGYIVVGSLKGDIRLYD-RIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccee-eecCCceEEEeecCCcEEeeh-hhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 3322 222468999999999999999 4666444 4667677888899999999999999998888884
No 409
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=87.71 E-value=26 Score=35.85 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=35.3
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+|+|.--++|++|+|.=. -.+|-+-|-.||+-+..|.|-
T Consensus 146 iNsV~~~~~G~yLiS~R~-----------~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRN-----------TSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCCccEEEEecc-----------cCEEEEEECCCCcEEEEeCCC
Confidence 889999999999999765 788999999999999999876
No 410
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.13 E-value=31 Score=33.57 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=44.2
Q ss_pred CCeEEEEeCCCeEEEEEC-CCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 273 NEKLLVKQENENLQILDV-RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv-~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
++.|++|.++| |.++++ ...+..+...- ..|..+...|+-++|+.=+|+++.+.++
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLsd~~l~~~~L 63 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLSDGQLYVYDL 63 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEcCCccEEEEc
Confidence 57888898888 899998 34444444332 2389999999999999989999999997
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.95 E-value=40 Score=34.73 Aligned_cols=118 Identities=10% Similarity=0.059 Sum_probs=62.2
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCC
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHL 343 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~ 343 (464)
..+..++ ++..+++++...-.+-||--...-....+.-...+.++.|+||+.+.+.+..+.|+.=+. +.-..++..+.
T Consensus 148 ~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~-~~~~~~w~~~~ 225 (302)
T PF14870_consen 148 NDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDD-PDDGETWSEPI 225 (302)
T ss_dssp EEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE--TTEEEEE---B
T ss_pred EeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccC-CCCcccccccc
Confidence 4444445 344444565666667888443334444444557899999999999988878888887772 22233444433
Q ss_pred CCc--CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 344 LWH--PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 344 ~~~--~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
... ..-.+-++++.|++.+.|+|+ .|++-... ..|+--++
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg------------~G~l~~S~-DgGktW~~ 267 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGG------------SGTLLVST-DGGKTWQK 267 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEES------------TT-EEEES-STTSS-EE
T ss_pred CCcccCceeeEEEEecCCCCEEEEeC------------CccEEEeC-CCCccceE
Confidence 221 112367899999999999886 56665543 34554443
No 412
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.43 E-value=3.6 Score=44.93 Aligned_cols=38 Identities=11% Similarity=0.440 Sum_probs=28.2
Q ss_pred ceEEEEEcC----CCcEEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 305 TPSAFIFLY----ENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 305 ~v~sv~Fsp----dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
.+.+.+.++ +..++++-+ |+++|+||+ +|+|+.+..-.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 455566666 778888988 999999999 79998876443
No 413
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.51 E-value=39 Score=36.70 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=57.0
Q ss_pred CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEE--EeccCC-CCcCCCCeeEEEEC
Q 012410 281 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVT--SFEDHL-LWHPDCNTNNIYIT 357 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~--tl~gH~-~~~~~~~v~svafS 357 (464)
....+-+.| .+|+.+-.+......-..+-+.++|.+++..+ ..++..|..|+.+. .|.+.. ..|. .+..-
T Consensus 126 ~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-----D~~~l 198 (477)
T PF05935_consen 126 SSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-----DIDEL 198 (477)
T ss_dssp BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S------EEE-
T ss_pred CCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-----ccEEC
Confidence 556777888 77887665443221111167889999987665 88999999999766 444511 1122 36688
Q ss_pred CCCCEEEEEecCCCcc---ccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 358 SDQDLIISYCKAEPED---QWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 358 pDg~~LaSgs~~~~~~---~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
|+|++|+-+......+ ....-+|. |-..| .+|+-+..+..-
T Consensus 199 ~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~ 242 (477)
T PF05935_consen 199 PNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFF 242 (477)
T ss_dssp TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGG
T ss_pred CCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehH
Confidence 9999999887311100 00011244 55667 899998887553
No 414
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.25 E-value=17 Score=40.23 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=89.2
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC------CeEEEEeCCCeEEEEECCC-Cc-EEEEcccCC----Cc
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN------EKLLVKQENENLQILDVRN-AE-LMEVSRTEF----MT 305 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~------~~lla~s~D~tIkIWDv~t-g~-~l~~l~gh~----~~ 305 (464)
.-..|+=.|||.|+++-+...+ .-+.=|+|.|++. ++.++|=.|..|-=||++- |. .+.+-++|+ .-
T Consensus 354 ~~~~l~klDIE~GKIVeEWk~~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 354 EQDKLYKLDIERGKIVEEWKFE-DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred CcCcceeeecccceeeeEeecc-CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 4456788899999999887743 2255666666532 3455666788888899874 22 455555553 11
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNFRGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~-tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
-.+++-.-+| .+|.|| +|-|||+|-.|..-+ -|.|-... |.-|..|.||++|+.-| +.++
T Consensus 433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~-----I~hVdvtadGKwil~Tc------------~tyL 494 (644)
T KOG2395|consen 433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDA-----IKHVDVTADGKWILATC------------KTYL 494 (644)
T ss_pred cceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCc-----eeeEEeeccCcEEEEec------------ccEE
Confidence 2234444555 466777 999999997666544 45555544 77899999999999988 5777
Q ss_pred EEEeC
Q 012410 384 NVSSI 388 (464)
Q Consensus 384 klWdi 388 (464)
-|-++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 77764
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=83.68 E-value=94 Score=36.15 Aligned_cols=192 Identities=10% Similarity=0.070 Sum_probs=96.4
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
+| +|-.++.++.+.=-|.+||+.+-...- ..+..- .....-.-+-+|+..++..-.... -..+ ..+++
T Consensus 194 gg-~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~-~~~~~cRGvay~~~p~~~~~~~~~------~~p~---~~~~r 262 (764)
T TIGR03074 194 GD-TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG-RQHQTCRGVSYYDAPAAAAGPAAP------AAPA---DCARR 262 (764)
T ss_pred CC-EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc-cccccccceEEecCCccccccccc------cccc---ccCCE
Confidence 55 555567778888889999998755431 111000 000000112334332221100000 0000 02467
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCC---------------ceEEEEEcCCCcEEEEEe----------CCeEEEEe
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFM---------------TPSAFIFLYENQLFLTFR----------NRTVAVWN 330 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~---------------~v~sv~FspdgqllaS~s----------D~TIklWd 330 (464)
++.+..|+.+.-.|.+||+.+..+..+.. .+.+--.-.++.+++.++ ++.|+-.|
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 88888899999999999998765432100 011111112566666543 47899999
Q ss_pred C-CCceEEEecc-C---C-------CCc-CCCCee-EEEECCCCCEEEEEe-cCCCcc----c--cccCCCCeEEEEeCC
Q 012410 331 F-RGELVTSFED-H---L-------LWH-PDCNTN-NIYITSDQDLIISYC-KAEPED----Q--WMEGSAGSINVSSIL 389 (464)
Q Consensus 331 ~-~Ge~l~tl~g-H---~-------~~~-~~~~v~-svafSpDg~~LaSgs-~~~~~~----~--~~~s~DgtIklWdi~ 389 (464)
. +|+++-.+.- + . .|. ..-++| ..++.|+-.++.-+. .+.|+- + ...--.++|-=-|+.
T Consensus 343 a~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~ 422 (764)
T TIGR03074 343 VNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT 422 (764)
T ss_pred CCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC
Confidence 9 7999876641 0 0 010 001121 245555555544422 112210 0 011124677778999
Q ss_pred CCeEEEEEcc
Q 012410 390 TGKCLAKINA 399 (464)
Q Consensus 390 tG~cl~tl~g 399 (464)
|||....++.
T Consensus 423 TGk~~W~~Q~ 432 (764)
T TIGR03074 423 TGKERWVFQT 432 (764)
T ss_pred CCceEEEecc
Confidence 9999988876
No 416
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.06 E-value=3.8 Score=46.24 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=80.6
Q ss_pred ceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec
Q 012410 90 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (464)
Q Consensus 90 ~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~ 169 (464)
+..-.-..+++|+.++..|.+.+|++..|+.+..=|.+.+..+-....|++....|. +++. ..|-+..+.
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAa----gt~~------g~V~v~ql~ 106 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAA----GTAS------GRVSVFQLN 106 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhh----hcCC------ceEEeehhh
Confidence 333333448999999999999999999998887776666666667777777666555 5555 667676665
Q ss_pred cCCCCCcccceeeccccC---ceEEEEeCCCCcEEEEecCCCcEEEEeCCC
Q 012410 170 RGKPDSGFALFESESLKW---PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 217 (464)
Q Consensus 170 ~G~~~~~~~l~~~~~~~~---~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t 217 (464)
.+++ ..+..++.....| +.++++| +||+.|-||..-|+|-+=.|.+
T Consensus 107 ~~~p-~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELP-RDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCC-CcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence 5443 2233333322223 3379997 8999999999988887766554
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=82.75 E-value=13 Score=42.15 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=60.8
Q ss_pred CeEEE-EeCCCeEEEEECCCCcEEE--EcccCCCceEEEEEc--CCCcEEEEEe-CCeEEEEeC-C------Cc---eEE
Q 012410 274 EKLLV-KQENENLQILDVRNAELME--VSRTEFMTPSAFIFL--YENQLFLTFR-NRTVAVWNF-R------GE---LVT 337 (464)
Q Consensus 274 ~~lla-~s~D~tIkIWDv~tg~~l~--~l~gh~~~v~sv~Fs--pdgqllaS~s-D~TIklWd~-~------Ge---~l~ 337 (464)
+++++ .+...++.|||.+.+.+.. .+ .+.+.|..+.|. ||||.+++-+ .+.|.|+-- + +- .++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 44444 4566899999999998543 34 334678877754 9999999999 999999862 1 21 222
Q ss_pred --EeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 338 --SFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 338 --tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
.+.+|+. |+ |.+..+-+||.+++..
T Consensus 120 ~i~i~~~T~-h~---Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 120 KIDISSHTP-HP---IGDSIWLKDGTLVVGS 146 (631)
T ss_pred EEEeecCCC-CC---ccceeEecCCeEEEEe
Confidence 2345553 22 6688899999998765
No 418
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=81.53 E-value=26 Score=36.93 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=24.8
Q ss_pred CEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 437 DITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 437 ~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+|+.+|..+.||+-+.+|+|++|+.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 5999999999999999999999999983
No 419
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.45 E-value=22 Score=35.50 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=50.7
Q ss_pred EEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--C--CeEEEEeC-C--CceE-EEecc---CCCCcCCCCeeEEE
Q 012410 287 ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--N--RTVAVWNF-R--GELV-TSFED---HLLWHPDCNTNNIY 355 (464)
Q Consensus 287 IWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D--~TIklWd~-~--Ge~l-~tl~g---H~~~~~~~~v~sva 355 (464)
+||+.+++....-........+=+|.|||++|.+|+ | +.|++.+- . +.|- ....+ ..-|- .++.
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-----pT~~ 124 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-----PTAT 124 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-----ccce
Confidence 899999886543333344566667999999999998 4 36888885 2 2332 11111 11252 3677
Q ss_pred ECCCCCEEEEEec
Q 012410 356 ITSDQDLIISYCK 368 (464)
Q Consensus 356 fSpDg~~LaSgs~ 368 (464)
.=|||+.|+-|+.
T Consensus 125 ~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 125 TLPDGRVLIVGGS 137 (243)
T ss_pred ECCCCCEEEEeCc
Confidence 7899999999875
No 420
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.31 E-value=5.9 Score=27.31 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=25.9
Q ss_pred CCCc-EEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE
Q 012410 196 VNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI 234 (464)
Q Consensus 196 pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf 234 (464)
|||+ +.++.-.+++|-++|+++++.+.++. ...-+.++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4566 44455568889999998888887766 333445544
No 421
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.60 E-value=43 Score=33.89 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=62.9
Q ss_pred EECCCCcEEEEcccCCC--------ceEEEEEcCCCcE-EEEEe-CCeEEEEe--C-CCceE-----EEeccCCC---Cc
Q 012410 288 LDVRNAELMEVSRTEFM--------TPSAFIFLYENQL-FLTFR-NRTVAVWN--F-RGELV-----TSFEDHLL---WH 346 (464)
Q Consensus 288 WDv~tg~~l~~l~gh~~--------~v~sv~Fspdgql-laS~s-D~TIklWd--~-~Ge~l-----~tl~gH~~---~~ 346 (464)
.....|++...+.+|.- -..+++|+-|-+. ...-+ +-+|.-|| . +|.+. -.|+..+. ..
T Consensus 134 le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~ 213 (310)
T KOG4499|consen 134 LEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE 213 (310)
T ss_pred ccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC
Confidence 33345555555555542 2345667655554 44556 88999999 4 47653 34443211 22
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
|| ..++--+|.+.+..-. -++|-..|..|||.|.+++=-+.
T Consensus 214 PD----Gm~ID~eG~L~Va~~n-----------g~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 214 PD----GMTIDTEGNLYVATFN-----------GGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred CC----cceEccCCcEEEEEec-----------CcEEEEECCCCCcEEEEEEcCCC
Confidence 32 3556667887766543 78999999999999999977664
No 422
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=80.37 E-value=1e+02 Score=36.75 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=100.3
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEE---EeeC-CCEEEEEEe-ecCCCCcccceeeEEEEEeccCCCCCcccceeec
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLF---YNKN-NDSLITVSV-YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~---fs~~-g~~l~svSa-~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~ 183 (464)
.++++|-.|=+-++...+...|-+-|+- |..| +.++++.-+ +-+|.----.||.+-++.-..+++ . ..++..
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L-~--~v~e~~ 827 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL-E--LVAETV 827 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-e--eeeeee
Confidence 4677777777777777777777777766 7766 666665322 223332223345555544442333 1 234444
Q ss_pred cccCceE-EEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 184 SLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 184 ~~~~~~~-VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
+.+-|.+ ++| ||++|| +-...|+|+++.+.+.|+.-. +...++-..++.+
T Consensus 828 v~Gav~aL~~f---ngkllA--~In~~vrLye~t~~~eLr~e~-----------~~~~~~~aL~l~v------------- 878 (1096)
T KOG1897|consen 828 VKGAVYALVEF---NGKLLA--GINQSVRLYEWTTERELRIEC-----------NISNPIIALDLQV------------- 878 (1096)
T ss_pred eccceeehhhh---CCeEEE--ecCcEEEEEEccccceehhhh-----------cccCCeEEEEEEe-------------
Confidence 4455554 556 799987 566789999988875554321 1112222222221
Q ss_pred eeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEccc-CCCceEEEEEcCCCcEEEEEeCCeEEEE
Q 012410 263 NKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFRNRTVAVW 329 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv~FspdgqllaS~sD~TIklW 329 (464)
.++.+++|- .-=|+-.++-..|+..++-+. |..|.+++.+..+-.+|.+-.++.+.+-
T Consensus 879 ---------~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 879 ---------KGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTV 939 (1096)
T ss_pred ---------cCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEE
Confidence 235566654 333444555566667766553 4467778887777666654445555444
No 423
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.18 E-value=95 Score=33.79 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=74.9
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE--EcccCC-CceEEEEEcCCCc
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEF-MTPSAFIFLYENQ 316 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~--~l~gh~-~~v~sv~Fspdgq 316 (464)
..+-+.|.+ |.+...+.........+.+. .++.+++++. ..++..|+ .|+.+. .+.+.. ..=-.+.+.|+|+
T Consensus 128 ~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l--~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 128 SYTYLIDNN-GDVRWYLPLDSGSDNSFKQL--PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEETT-S-EEEEE-GGGT--SSEEE---TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred ceEEEECCC-ccEEEEEccCccccceeeEc--CCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCC
Confidence 445566664 77766665221221223333 3578887665 88888895 577554 333311 0012567889999
Q ss_pred EEEEEe--------------CCeEEEEeCCCceEEE--eccCC-----------------------CCcCCCCeeEEEEC
Q 012410 317 LFLTFR--------------NRTVAVWNFRGELVTS--FEDHL-----------------------LWHPDCNTNNIYIT 357 (464)
Q Consensus 317 llaS~s--------------D~TIklWd~~Ge~l~t--l~gH~-----------------------~~~~~~~v~svafS 357 (464)
+|+.+. .-.|-..|-+|+.+.. +.+|. +|.. +|+|.+-
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H---~Nsi~yd 279 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLH---INSIDYD 279 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-----EEEEEEE
T ss_pred EEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccc---cCccEEe
Confidence 888665 1133444455777664 33443 2433 7999998
Q ss_pred C-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 358 S-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 358 p-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
| |+.+|+|+=. -..|-..|-.||+....|-+|...
T Consensus 280 ~~dd~iivSsR~-----------~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 280 PSDDSIIVSSRH-----------QSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp TTTTEEEEEETT-----------T-EEEEEE-TTS-EEEEES-STT-
T ss_pred CCCCeEEEEcCc-----------ceEEEEEECCCCcEEEEeCCCCCC
Confidence 8 7788887632 347777888899999999888763
No 424
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.23 E-value=17 Score=43.99 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=90.1
Q ss_pred eCCCeEEEEECCCCcEEEEcccCCCceEEE--------EEcCCCcEEEEEe-CCeEEEEeC-----CCceEEEeccC-CC
Q 012410 280 QENENLQILDVRNAELMEVSRTEFMTPSAF--------IFLYENQLFLTFR-NRTVAVWNF-----RGELVTSFEDH-LL 344 (464)
Q Consensus 280 s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv--------~FspdgqllaS~s-D~TIklWd~-----~Ge~l~tl~gH-~~ 344 (464)
.-|..+-||+..++.-.+...+-..+|-+| +|-|+=|.++--. ---|-|.-+ +|+. .-|..+ .-
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-SIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-cccccceee
Confidence 468899999999977666666655566555 4566655544433 334445543 2222 122223 11
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
.+.+.+|+.|.-+.||+++.+|- || .||.+. -+|-.-+.+-- -.+++...+. -..-.
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~------------dg--~lyEl~-Yq~~~gWf~~r---c~Kiclt~s~-----ls~lv 231 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGR------------DG--NLYELV-YQAEDGWFGSR---CRKICLTKSV-----LSSLV 231 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeec------------CC--CEEEEE-EeccCchhhcc---cccccCchhH-----HHHhh
Confidence 12234588999999999998874 66 788762 11111110000 0001100000 00000
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..+-+..+..-+.|..++.+-.++.||+=++.|+|++||.
T Consensus 232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEc
Confidence 0011111234458999999999999999999999999983
No 425
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.73 E-value=6.8 Score=38.24 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=56.5
Q ss_pred ccchhhhccccceEEEEeccceeehhccCCeEEeeecccccEeeE-------eec------CCCceEEEEEEeeCCCEEE
Q 012410 79 PFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICF-------LNV------SPDEVIRSLFYNKNNDSLI 145 (464)
Q Consensus 79 ~~~l~~l~~~s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~-------ln~------~~~~~i~Sv~fs~~g~~l~ 145 (464)
+.++|.|.=.+++.-.-..|++|.++..+|.+.+||+.+++.+.. ++. ....-|.++..+.+|.-++
T Consensus 3 rrl~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 3 RRLLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV 82 (219)
T ss_pred ccccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE
Confidence 567888888899888888899999999999999999998886543 222 3556688888888888887
Q ss_pred EEE
Q 012410 146 TVS 148 (464)
Q Consensus 146 svS 148 (464)
+.|
T Consensus 83 ~ls 85 (219)
T PF07569_consen 83 TLS 85 (219)
T ss_pred EEe
Confidence 755
No 426
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.22 E-value=10 Score=26.10 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=29.9
Q ss_pred CCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEc
Q 012410 272 FNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 272 ~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs 312 (464)
+++++.++. .+++|-++|..+++.+..... ...++.++|+
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 356677754 789999999999998877665 2567777764
No 427
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=75.85 E-value=9.2 Score=26.35 Aligned_cols=26 Identities=4% Similarity=0.046 Sum_probs=18.3
Q ss_pred CceEEEEEcCCCcEEEEEe--C--CeEEEE
Q 012410 304 MTPSAFIFLYENQLFLTFR--N--RTVAVW 329 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~s--D--~TIklW 329 (464)
..-...+|||||+.|+=.+ + +.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456778999999988777 5 666665
No 428
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=75.23 E-value=54 Score=32.80 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=63.2
Q ss_pred CeEEE-Ee-CC--CeEEEEECCC----CcEEEE---cccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-C-Cc-eEE
Q 012410 274 EKLLV-KQ-EN--ENLQILDVRN----AELMEV---SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-R-GE-LVT 337 (464)
Q Consensus 274 ~~lla-~s-~D--~tIkIWDv~t----g~~l~~---l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~-Ge-~l~ 337 (464)
|+++. |+ .| ..||+++..+ .+..+. +... -|=-++.-+|||+.|+-|+ .-+...|.- . +. ...
T Consensus 78 G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~-RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~ 156 (243)
T PF07250_consen 78 GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG-RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVT 156 (243)
T ss_pred CCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC-CccccceECCCCCEEEEeCcCCCcccccCCccCCCCcee
Confidence 56665 43 23 5688888655 222221 1111 2333566789999988887 558888875 2 22 111
Q ss_pred --Eec---c--CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 338 --SFE---D--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 338 --tl~---g--H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
-|. . ..++- .-+..-|||++++.+.. + -.|+|..+++-+++|.
T Consensus 157 ~~~l~~~~~~~~~nlY-----P~~~llPdG~lFi~an~------------~-s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 157 LPFLSQTSDTLPNNLY-----PFVHLLPDGNLFIFANR------------G-SIIYDYKTNTVVRTLP 206 (243)
T ss_pred eecchhhhccCccccC-----ceEEEcCCCCEEEEEcC------------C-cEEEeCCCCeEEeeCC
Confidence 111 1 11221 25888999999998853 3 3578998888777764
No 429
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.81 E-value=92 Score=31.11 Aligned_cols=169 Identities=11% Similarity=0.045 Sum_probs=89.1
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEc---cCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIE---QFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 315 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~---~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg 315 (464)
.-|+.||+++|+.+.+-+-...++ |-+ +-++.+-. .=.|+..-.+|..+-+|+..+.=+ ..=|.+ ..|+
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~----FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-GeGWgL--t~d~ 140 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTV----FGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-GEGWGL--TSDD 140 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccc----cccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-Ccceee--ecCC
Confidence 469999999999886543110111 111 00111111 335677778898888888754322 123444 3444
Q ss_pred cEEEEEe-CCeEEEEeC-----CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 316 QLFLTFR-NRTVAVWNF-----RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 316 qllaS~s-D~TIklWd~-----~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+-|..+. ..|+..-|- .+....|+.|--- . ++|-+-+- ||.+.|--=. +..|---|..
T Consensus 141 ~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv--~--~LNELE~V-dG~lyANVw~-----------t~~I~rI~p~ 204 (262)
T COG3823 141 KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPV--S--KLNELEWV-DGELYANVWQ-----------TTRIARIDPD 204 (262)
T ss_pred cceEeeCCceEEEecCHHHhhhcceEEEEECCeec--c--cccceeee-ccEEEEeeee-----------ecceEEEcCC
Confidence 4454444 777877773 2444555555321 1 13333332 5555544332 3344445778
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEe
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTG 453 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSg 453 (464)
+|+.++.+.-..- +. +-+.+.....-...+||.|++. .++||
T Consensus 205 sGrV~~widlS~L-~~---------------------~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 205 SGRVVAWIDLSGL-LK---------------------ELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCcEEEEEEccCC-ch---------------------hcCccccccccccceeecCcCCeEEEec
Confidence 8888887754321 11 1112222233567799999994 55566
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.43 E-value=98 Score=35.84 Aligned_cols=95 Identities=14% Similarity=0.240 Sum_probs=59.3
Q ss_pred EEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-cc---CCCceEEEEEcCCCc
Q 012410 242 LKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RT---EFMTPSAFIFLYENQ 316 (464)
Q Consensus 242 IklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~g---h~~~v~sv~Fspdgq 316 (464)
|+|+++. |+.|.++. .+ ...-..-|+. ++.|+.-+.||++.+++ ..|+.++.. .| ....|..+-|...|=
T Consensus 66 I~If~~s-G~lL~~~~w~~-~~lI~mgWs~--~eeLI~v~k~g~v~Vy~-~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 66 IRIFNIS-GQLLGRILWKH-GELIGMGWSD--DEELICVQKDGTVHVYG-LLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred EEEEecc-ccchHHHHhcC-CCeeeecccC--CceEEEEeccceEEEee-cchhhhcccccccccccCceeEEEEecCce
Confidence 8888885 99998776 22 2444444544 48899999999999999 567666542 11 112355555666777
Q ss_pred EEEEEeCCeEEEEeCCCceEEEecc
Q 012410 317 LFLTFRNRTVAVWNFRGELVTSFED 341 (464)
Q Consensus 317 llaS~sD~TIklWd~~Ge~l~tl~g 341 (464)
.+++.+++-+.+=++.-..+.++.+
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~d 165 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPD 165 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCC
Confidence 7777665555555543334444443
No 431
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.21 E-value=13 Score=25.62 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=14.3
Q ss_pred eeEEEECCCCCEEEEEec
Q 012410 351 TNNIYITSDQDLIISYCK 368 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~ 368 (464)
-...+|||||+.|+=.+.
T Consensus 11 ~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp EEEEEE-TTSSEEEEEEE
T ss_pred ccCEEEecCCCEEEEEec
Confidence 457899999999998775
No 432
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.57 E-value=90 Score=31.98 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=46.6
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC-CCcc-cccCCCCCCcccccccccccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS-PKVD-DELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 428 (464)
..+|++.++|.+++|.=. ....+....|.-.+.. |+.+..+.-.... |... ..-+..|
T Consensus 87 ~Egi~~~~~g~~~is~E~-----~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N-------------- 146 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEG-----GRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNN-------------- 146 (326)
T ss_pred hhHeEEecCCCEEEEeCC-----ccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCC--------------
Confidence 568999999999998522 0000112788888864 8887777322210 0000 0011112
Q ss_pred ccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 429 STVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
....+|+++|||+.|+.+.+
T Consensus 147 -------~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 147 -------RGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred -------CCeEEEEECCCCCEEEEEEC
Confidence 27889999999998887765
No 433
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=69.50 E-value=26 Score=37.71 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=40.7
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 336 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 336 l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
...|.+..-. +.+|+.+|+|++.|.. + +=|.|-|+|+.+|..++.++|+.+
T Consensus 300 r~~l~D~~R~-----~~~i~~sP~~~laA~t-D----------slGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 300 RFGLPDSKRE-----GESICLSPSGRLAAVT-D----------SLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred EEeeccCCce-----EEEEEECCCCCEEEEE-c----------CCCcEEEEECCCChhhhhhccCcc
Confidence 3455555443 6799999999988774 3 269999999999999999999986
No 434
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=67.70 E-value=10 Score=37.36 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=43.6
Q ss_pred ceEEEEecc-ceeehhccCCeEEeeecc--cccEeeEeecCCCceEEEEEEeeCCCEEEEE
Q 012410 90 KVIEIVAAR-DIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNNDSLITV 147 (464)
Q Consensus 90 ~v~~~~~ag-~~l~~l~~~g~~~~~~~~--~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~sv 147 (464)
....+..+| |.|+.......+.+|++. ..+.++.+ ..-+.|..+.|+..|++|+|.
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEE
Confidence 334566677 999888888899999977 34456665 455779999999999999995
No 435
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=67.36 E-value=1.3e+02 Score=33.55 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=54.7
Q ss_pred eeEEEEccCCCeE-EEEeCC------CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC-----eEEEEe
Q 012410 264 KKVDFIEQFNEKL-LVKQEN------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-----TVAVWN 330 (464)
Q Consensus 264 ~~V~F~~~~~~~l-la~s~D------~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~-----TIklWd 330 (464)
..+++.. ++| ++|+.| .++-.+|..+.+-.....=.......-.=.=+|.+.|.|+ |+ +|..||
T Consensus 326 ~~~~~~~---~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 326 VGVAVLN---GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred ccEEEEC---CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEec
Confidence 4555544 444 447777 4667899999886553221111111111234899999998 86 688888
Q ss_pred CCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 331 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 331 ~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
.....-............ .-.+ .-+|++-|.|+.
T Consensus 403 p~~~~W~~va~m~~~r~~--~gv~--~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSG--HGVA--VLGGKLYIIGGG 436 (571)
T ss_pred CCCCcccccCCCCcceee--eEEE--EECCEEEEEcCc
Confidence 754444333333222111 1122 337888888875
No 436
>PHA02713 hypothetical protein; Provisional
Probab=65.57 E-value=2.2e+02 Score=31.55 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=57.5
Q ss_pred eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C------CeEEEEeCCC--c--eEEEeccCCCCcCCCCee
Q 012410 284 NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N------RTVAVWNFRG--E--LVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 284 tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D------~TIklWd~~G--e--~l~tl~gH~~~~~~~~v~ 352 (464)
++..+|..+.+-...-.-......+-+-.-+|++.+.|+ + .+|..+|.+- + .+..+.-...- ..
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-----~~ 507 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-----LH 507 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-----ce
Confidence 577899888876543221111112222345688888887 5 2467788742 2 22333322221 23
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCC--eEEEEeCCCCeEEEEEccCCC
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAG--SINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~Dg--tIklWdi~tG~cl~tl~gh~~ 402 (464)
.+++ +|++.+.|+. |+ ++-.+|+.|++--..-..|++
T Consensus 508 ~~~~--~~~iyv~Gg~-----------~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 508 TILH--DNTIMMLHCY-----------ESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred eEEE--CCEEEEEeee-----------cceeehhhcCcccccccchhhhcCC
Confidence 3444 8899999886 44 788888888775544444543
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=64.49 E-value=51 Score=37.97 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=64.1
Q ss_pred CeEEEEeCCCeEEEEECCC-------C-------c------EEEEcccCCCceEEEEEc--CCCcEEEEEe-CCeEEEEe
Q 012410 274 EKLLVKQENENLQILDVRN-------A-------E------LMEVSRTEFMTPSAFIFL--YENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~t-------g-------~------~l~~l~gh~~~v~sv~Fs--pdgqllaS~s-D~TIklWd 330 (464)
+-|+++.+||.|-+|.+++ . . +.-.+. -....|++++. ...++||.++ -..|.|+-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 4556678999999996522 0 0 111111 12478999998 8888999888 77899987
Q ss_pred CCC--ceEEEeccCCCCcCCCCeeEEEECCCC---C---EEEEEecCCCccccccCCCCeEEEEeC
Q 012410 331 FRG--ELVTSFEDHLLWHPDCNTNNIYITSDQ---D---LIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 331 ~~G--e~l~tl~gH~~~~~~~~v~svafSpDg---~---~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+.. +....-..|...| ||.+|.|-++. . .|++++- .|.+-+|++
T Consensus 194 f~l~~~r~~~~~s~~~~h---NIP~VSFl~~~~d~~G~v~v~a~dI-----------~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSH---NIPNVSFLDDDLDPNGHVKVVATDI-----------SGEVWTFKI 245 (717)
T ss_pred Eecccccccccccccccc---CCCeeEeecCCCCCccceEEEEEec-----------cCcEEEEEE
Confidence 632 2111111333333 37789997764 2 6777765 788888877
No 438
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.29 E-value=71 Score=32.41 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=52.4
Q ss_pred EEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEEC-CCCCEEEEEecCCCccccccCCCCeE
Q 012410 307 SAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 307 ~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafS-pDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
-..+.--+|.++++.- -+||.--|. +|++|.++.=.+.. |.+++|- |+=+++..-+.++-+|. +
T Consensus 215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q-----itsccFgGkn~d~~yvT~aa~~~dp--------~ 281 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ-----ITSCCFGGKNLDILYVTTAAKFDDP--------V 281 (310)
T ss_pred CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc-----eEEEEecCCCccEEEEEehhcccCc--------h
Confidence 3344455788876655 889988998 79999999877665 7888885 34456666665444333 2
Q ss_pred EEEeCCCCeEEEEEccCC
Q 012410 384 NVSSILTGKCLAKINATN 401 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~ 401 (464)
++=--.++-|+.++.|-.
T Consensus 282 ~~~~~p~aG~iykitgl~ 299 (310)
T KOG4499|consen 282 RTNTDPNAGTIYKITGLN 299 (310)
T ss_pred hcccCCCCccEEEecCcc
Confidence 222113455667765544
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=62.22 E-value=1.1e+02 Score=34.75 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=21.0
Q ss_pred cCC-CceEEEEEcCCCcEEEEEeCCeEEEEe
Q 012410 301 TEF-MTPSAFIFLYENQLFLTFRNRTVAVWN 330 (464)
Q Consensus 301 gh~-~~v~sv~FspdgqllaS~sD~TIklWd 330 (464)
.|+ ..+.+.++.+||.+++.++ +.+-|.|
T Consensus 125 ~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~d 154 (631)
T PF12234_consen 125 SHTPHPIGDSIWLKDGTLVVGSG-NQLFVFD 154 (631)
T ss_pred cCCCCCccceeEecCCeEEEEeC-CEEEEEC
Confidence 344 4688899999999887655 4566666
No 440
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=61.54 E-value=1.5e+02 Score=28.30 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=15.6
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 358 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 358 pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
|||..=..++ +|.||+=| ..|..|
T Consensus 152 ~dG~qet~y~------------~gr~r~kd-~~g~~~ 175 (179)
T PF07202_consen 152 PDGRQETRYA------------SGRVRIKD-KDGNVI 175 (179)
T ss_pred cCCCEEEEeC------------CCcEEEec-CCCCEE
Confidence 5666655554 78888877 466654
No 441
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=60.54 E-value=1.4e+02 Score=30.39 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=58.5
Q ss_pred CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe---CC----eEEEEeCCCceEEEeccCC-CCcCCCCeeEE
Q 012410 283 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NR----TVAVWNFRGELVTSFEDHL-LWHPDCNTNNI 354 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s---D~----TIklWd~~Ge~l~tl~gH~-~~~~~~~v~sv 354 (464)
..|-+||..+.+-.....+=...|.++.|..+.+++++|. ++ .+..||+..+-..++.+-. +-++. .|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg-pv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG-PVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC-cEEEE
Confidence 4688999999888877666667899999999999999986 33 6889999877777777733 22221 25555
Q ss_pred EE-CCCCC-EEEEE
Q 012410 355 YI-TSDQD-LIISY 366 (464)
Q Consensus 355 af-SpDg~-~LaSg 366 (464)
.+ ..|+. +.+.|
T Consensus 95 ~~~~~d~~~~~~aG 108 (281)
T PF12768_consen 95 TFISNDGSNFWVAG 108 (281)
T ss_pred EeeccCCceEEEec
Confidence 54 33554 44444
No 442
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=60.36 E-value=2.8e+02 Score=32.96 Aligned_cols=63 Identities=22% Similarity=0.317 Sum_probs=44.7
Q ss_pred CCCeEEEEECCCCcEEEEcc-------cCCCceEEEEEcCCCcEEEEEe--CC---eEEEEeC-CCceEEEeccCCCCcC
Q 012410 281 ENENLQILDVRNAELMEVSR-------TEFMTPSAFIFLYENQLFLTFR--NR---TVAVWNF-RGELVTSFEDHLLWHP 347 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~-------gh~~~v~sv~FspdgqllaS~s--D~---TIklWd~-~Ge~l~tl~gH~~~~~ 347 (464)
.-+.|-|=| .+|++++... .|+.+|.. +.+-.+||-- || .|.|=|+ +++.+.--||-.+|||
T Consensus 529 ~he~~lvad-s~gklv~~v~ap~gytfdh~ew~~~----~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~eg~elwhp 603 (912)
T TIGR02171 529 VHERLLVAD-SKGKLVRAVAAPAGYTFDHTEWVTG----RSNLAVATLTNVNGAHKKIALINLSDSKVTELVEGDELWHP 603 (912)
T ss_pred ceeEEEEec-CCCchhhhccCCCCccccchhhhcC----CCceEEEEeecCCCccceEEEEEcCCCceEEeecccccccc
Confidence 446666777 7898887543 36666543 3455555532 43 8999999 7999999999999999
Q ss_pred C
Q 012410 348 D 348 (464)
Q Consensus 348 ~ 348 (464)
+
T Consensus 604 ~ 604 (912)
T TIGR02171 604 C 604 (912)
T ss_pred e
Confidence 5
No 443
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=60.23 E-value=26 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=20.9
Q ss_pred eeeEEEEccCC-CeEEE-EeCCCeEEEEECCC
Q 012410 263 NKKVDFIEQFN-EKLLV-KQENENLQILDVRN 292 (464)
Q Consensus 263 ~~~V~F~~~~~-~~lla-~s~D~tIkIWDv~t 292 (464)
++.+.|+|..+ ..||+ +..-+.|.|+|+++
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 56778886432 14444 66778999999996
No 444
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.88 E-value=81 Score=38.15 Aligned_cols=101 Identities=10% Similarity=0.089 Sum_probs=67.6
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcE-EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCC
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLW 345 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~-l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~ 345 (464)
+.|......++...|..|++.-+..-.. .+.+ .-+..+.+|+|||-|+.++-|. +||+.=+...++.+..+.+--..
T Consensus 163 wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~ 241 (1405)
T KOG3630|consen 163 WNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE 241 (1405)
T ss_pred ccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC
Confidence 3343334445556777776654322111 1111 1235678999999999999999 99999999999988777654442
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCC
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
- .--|.+|.|=....+||.|+...
T Consensus 242 e-~yrvl~v~Wl~t~eflvvy~n~t 265 (1405)
T KOG3630|consen 242 E-NYRVLSVTWLSTQEFLVVYGNVT 265 (1405)
T ss_pred C-CcceeEEEEecceeEEEEecccc
Confidence 1 12278899999999999998644
No 445
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.22 E-value=1.4e+02 Score=30.99 Aligned_cols=122 Identities=8% Similarity=0.147 Sum_probs=74.6
Q ss_pred ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe-CCCceEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 012410 300 RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN-FRGELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 375 (464)
Q Consensus 300 ~gh~~~v~sv~FspdgqllaS~s-D~TIklWd-~~Ge~l~tl~--gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~ 375 (464)
.|...-++++.|+||.++|.+-- ...--||= .+|+++.+.. |-.+ -..|...-+|++.++-=.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D------pE~Ieyig~n~fvi~dER------- 148 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD------PETIEYIGGNQFVIVDER------- 148 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC------hhHeEEecCCEEEEEehh-------
Confidence 34445599999999999888877 34444553 3799998654 4322 247888889999887433
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 376 MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
++++.+..+..+.-+-.+.-.. .|-+. -...++ .-..|||+|+.+.|.-+=+
T Consensus 149 ----~~~l~~~~vd~~t~~~~~~~~~-i~L~~--------------------~~k~N~---GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 149 ----DRALYLFTVDADTTVISAKVQK-IPLGT--------------------TNKKNK---GFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred ----cceEEEEEEcCCccEEeccceE-Eeccc--------------------cCCCCc---CceeeecCCCCceEEEEEc
Confidence 8888888765442221111100 00000 000012 4556899999999887776
Q ss_pred CCcEEec
Q 012410 456 HGLVHVW 462 (464)
Q Consensus 456 DgtVrlW 462 (464)
-.=++|.
T Consensus 201 r~P~~I~ 207 (316)
T COG3204 201 RNPIGIF 207 (316)
T ss_pred cCCcEEE
Confidence 6655543
No 446
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=57.85 E-value=28 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=21.7
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVF 213 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlW 213 (464)
..|..|+.+ ++|.++++-+....|+++
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 467899998 899999988777777654
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.93 E-value=3.9e+02 Score=31.27 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.1
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+--+.+||+.++||-+-. +|.|.+=++...+|+-.++
T Consensus 219 ~~ki~VS~n~~~laLyt~-----------~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTE-----------TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEEcCCcceEEEEec-----------CCcEEEEecchhhhhhccC
Confidence 456889999999999986 8999998888889888876
No 448
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=53.77 E-value=37 Score=22.20 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 304 MTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
..|..++..++|+++++=+ +..|++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence 4678899999999999988 777765
No 449
>PHA03098 kelch-like protein; Provisional
Probab=52.64 E-value=3.3e+02 Score=29.44 Aligned_cols=114 Identities=9% Similarity=0.041 Sum_probs=55.7
Q ss_pred CeEE-EEeCC-----CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C------CeEEEEeCCCceEEEec
Q 012410 274 EKLL-VKQEN-----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFE 340 (464)
Q Consensus 274 ~~ll-a~s~D-----~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D------~TIklWd~~Ge~l~tl~ 340 (464)
++|. +||.+ .++..||..+++-...-.-....-...+-..+|++++.|+ + ++|..+|....-...+.
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 4444 46644 4577899888775543211111111112235788888876 3 46788887422222222
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
.-.... . ...+..-++++.+.|+....+.. ..-..+.++|..+++..
T Consensus 423 ~~p~~r--~--~~~~~~~~~~iyv~GG~~~~~~~---~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 423 PLPISH--Y--GGCAIYHDGKIYVIGGISYIDNI---KVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCCccc--c--CceEEEECCEEEEECCccCCCCC---cccceEEEecCCCCcee
Confidence 111110 0 11223346778777765211100 00134888888777653
No 450
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=51.92 E-value=4.1e+02 Score=30.29 Aligned_cols=142 Identities=14% Similarity=0.204 Sum_probs=83.2
Q ss_pred CCCCeEEEEe----c--CCCEeEEEEeCCCceeEEEEEcCCCc-------EEEEEeeCCcceeeEEEEccC---CCeEEE
Q 012410 215 LKNYTMLYSI----S--DKHVQEIKIRSSSHVPLKILSIEDGT-------VLKVFYHLLHRNKKVDFIEQF---NEKLLV 278 (464)
Q Consensus 215 l~tg~~l~tl----~--~~~V~~Vafs~s~d~tIklWdi~tG~-------~l~tl~~~~~~~~~V~F~~~~---~~~lla 278 (464)
|-.|++|+|. + -+.|..||+..+...-+.=.-..+|+ ++..| .+|..|.|.|.. --.|||
T Consensus 2 LGkgkLLRTGlNaL~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~viGqF----EhV~GlsW~P~~~~~~paLLA 77 (671)
T PF15390_consen 2 LGKGKLLRTGLNALHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSKVIGQF----EHVHGLSWAPPCTADTPALLA 77 (671)
T ss_pred CcccchhhcchHHHHhhhccccceEecCCCEEEEEeeeeeCCccccCCccEeecc----ceeeeeeecCcccCCCCceEE
Confidence 3456666543 2 26788888864322222212223444 23334 346788887753 137899
Q ss_pred EeCCCeEEEEECCC-----CcEEEEcccCC-----CceEEEEEcCCCcEEEEEe--CCeEEEEeC--CCceE-EEeccCC
Q 012410 279 KQENENLQILDVRN-----AELMEVSRTEF-----MTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELV-TSFEDHL 343 (464)
Q Consensus 279 ~s~D~tIkIWDv~t-----g~~l~~l~gh~-----~~v~sv~FspdgqllaS~s--D~TIklWd~--~Ge~l-~tl~gH~ 343 (464)
-+..+.|-+|.+.- ++++..-.-|- --+-.+.|.|....|+.-- |-.| +.++ ++..+ ..+.++.
T Consensus 78 VQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~~~G 156 (671)
T PF15390_consen 78 VQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIKTSG 156 (671)
T ss_pred EeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEeccCCc
Confidence 99999999999872 33332211111 1233567888888876654 5444 6666 34433 4565554
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEe
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs 367 (464)
. |...+|++||+.|+-+=
T Consensus 157 ~------IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 157 L------IHCACWTKDGQRLVVAV 174 (671)
T ss_pred e------EEEEEecCcCCEEEEEe
Confidence 3 66788999999998774
No 451
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=51.15 E-value=1.4e+02 Score=31.38 Aligned_cols=82 Identities=9% Similarity=0.113 Sum_probs=54.8
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE---------eC-----------------CCce
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI---------RS-----------------SSHV 240 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf---------s~-----------------s~d~ 240 (464)
|.+-.+ .||++-.+-+..+++.-+|.++|+...... .+....++| |. ....
T Consensus 205 PhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~C 282 (335)
T TIGR03032 205 PHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGC 282 (335)
T ss_pred CcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcc
Confidence 334555 378888888899999999998887543222 233444444 11 1224
Q ss_pred eEEEEEcCCCcEEEEEe--eCCcceeeEEEEcc
Q 012410 241 PLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQ 271 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~ 271 (464)
-|.+-|+.||+++..|+ +....++.|+..|.
T Consensus 283 Gv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 283 GVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred cEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 68899999999998876 44456688888773
No 452
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=50.76 E-value=34 Score=25.35 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=23.5
Q ss_pred CEEEEEEcCCC---CEEEEeeCCCcEEeccC
Q 012410 437 DITSLFYDEER---NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 437 ~V~slafspDg---~~LaSgs~DgtVrlWd~ 464 (464)
.|.++.|||+. ..||-+-.-|-|+|+|.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~ 32 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDT 32 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEc
Confidence 68899999855 48888888899999984
No 453
>PHA02713 hypothetical protein; Provisional
Probab=50.49 E-value=3.9e+02 Score=29.64 Aligned_cols=68 Identities=7% Similarity=0.094 Sum_probs=39.9
Q ss_pred CeEEE-EeCC------CeEEEEECCC-CcEEE--EcccCCCceEEEEEcCCCcEEEEEe-CC--eEEEEeC-CCceEEEe
Q 012410 274 EKLLV-KQEN------ENLQILDVRN-AELME--VSRTEFMTPSAFIFLYENQLFLTFR-NR--TVAVWNF-RGELVTSF 339 (464)
Q Consensus 274 ~~lla-~s~D------~tIkIWDv~t-g~~l~--~l~gh~~~v~sv~FspdgqllaS~s-D~--TIklWd~-~Ge~l~tl 339 (464)
++|.+ |+.+ .++..+|..+ .+-.. .+...-.....+++ +|++.+.|+ |+ +|..+|. +++-...-
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchh
Confidence 55544 6643 2467899998 56433 23222222333333 899999999 88 7888887 45543333
Q ss_pred ccCC
Q 012410 340 EDHL 343 (464)
Q Consensus 340 ~gH~ 343 (464)
..|.
T Consensus 542 ~~~~ 545 (557)
T PHA02713 542 HQHS 545 (557)
T ss_pred hhcC
Confidence 3443
No 454
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=49.27 E-value=77 Score=31.28 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=40.5
Q ss_pred ceEEEEEcCCCcEEEEEeCCeEEEEeCC---CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 305 TPSAFIFLYENQLFLTFRNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~sD~TIklWd~~---Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
.|..+.=++.+.+|++.+..+|.+|++. .+.+.+|.-- +. |..++.++-|++|++==
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~-----V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GR-----VLQLVYSEAGDYLVTLE 78 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hh-----eeEEEeccccceEEEEE
Confidence 4555555554566666567889999984 4456677644 22 78999999999999863
No 455
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=46.75 E-value=1.6e+02 Score=24.88 Aligned_cols=76 Identities=8% Similarity=0.132 Sum_probs=39.0
Q ss_pred eEEEECCC-CCEEEEEecCCCccc------cccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 352 NNIYITSD-QDLIISYCKAEPEDQ------WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 352 ~svafSpD-g~~LaSgs~~~~~~~------~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
+.+++.+| |.+..|=+.+.-+-+ .....+|.+--+|..|++----+.+-.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~----------------------- 57 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY----------------------- 57 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES-----------------------
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC-----------------------
Confidence 36778888 777776542111111 334456888888888887544443322
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEe--eCCCcEEec
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTG--NRHGLVHVW 462 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSg--s~DgtVrlW 462 (464)
-=..|++|||++.|+-+ ..-+..|.|
T Consensus 58 ------------fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 58 ------------FPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp ------------SEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ------------ccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 44678999999955433 334445555
No 456
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=46.74 E-value=3e+02 Score=28.36 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=47.4
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEE--cccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCC
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEV--SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~--l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~ 343 (464)
++++.++..|+.|.-.|..+|+.+-. +.+....+..=++-.+|+++++..|+.+-.-|. +|+++-+++...
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC
Confidence 47788888888888888888885521 111111222222334999777777887777777 799988877766
No 457
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=45.00 E-value=1.2e+02 Score=33.09 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=54.5
Q ss_pred CCCeEEEEECCCCcEEEEcc-cC-CCceEEEEEc--CCCcEEEEEe--CCeEEEEeC--CCce----EEEecc--CCCCc
Q 012410 281 ENENLQILDVRNAELMEVSR-TE-FMTPSAFIFL--YENQLFLTFR--NRTVAVWNF--RGEL----VTSFED--HLLWH 346 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~-gh-~~~v~sv~Fs--pdgqllaS~s--D~TIklWd~--~Ge~----l~tl~g--H~~~~ 346 (464)
...++.+||+.+.+.++++. |. ...|-.|.|. |+...=.+++ ..+|-+|-- .|+- +-++.. ...|.
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 46899999999999999764 32 2357778887 5555443443 566655543 3542 223322 22231
Q ss_pred -----------CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 347 -----------PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 347 -----------~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|. -+..|.+|.|.++|--.+- -+|.||-+||..
T Consensus 300 lp~ml~~~~~~P~-LitDI~iSlDDrfLYvs~W----------~~GdvrqYDISD 343 (461)
T PF05694_consen 300 LPEMLKPFGAVPP-LITDILISLDDRFLYVSNW----------LHGDVRQYDISD 343 (461)
T ss_dssp --GGGGGG-EE-------EEE-TTS-EEEEEET----------TTTEEEEEE-SS
T ss_pred ccccccccccCCC-ceEeEEEccCCCEEEEEcc----------cCCcEEEEecCC
Confidence 11 2578999999999988886 389999999964
No 458
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=44.60 E-value=1.1e+02 Score=28.52 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=35.7
Q ss_pred CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC--c--EEEEEeCCeEEEEeC-CCceEEEeccCCC
Q 012410 281 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN--Q--LFLTFRNRTVAVWNF-RGELVTSFEDHLL 344 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg--q--llaS~sD~TIklWd~-~Ge~l~tl~gH~~ 344 (464)
..|+|++=+..+++|+.....-.....+ =.++. + .|.-.+.|.|.|=++ +|+|++++..-..
T Consensus 50 ~~g~Vqf~n~~~~~CL~~~~~G~~~~~~--C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~~~~ 116 (150)
T PF03498_consen 50 PFGYVQFVNPKTGTCLAAYGNGVFHYKS--CDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTFNNSRT 116 (150)
T ss_dssp TTCEEEEEETTTSEEEEEETTCEEEE----TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-STTSS
T ss_pred CCCEEEEEcCCCCcceeecCCCeEeecc--cCCCChhceEEEEEcCCCcEEEEecCCCceEEecCCCce
Confidence 4499999999999999984432111111 11111 1 123344788999999 7999999877653
No 459
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.00 E-value=2.6e+02 Score=34.38 Aligned_cols=26 Identities=8% Similarity=0.368 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 304 MTPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
-.|..++...+|+.|.+|.|+ -||.+
T Consensus 179 ~~V~~I~~t~nGRIF~~G~dg--~lyEl 204 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGRDG--NLYEL 204 (1311)
T ss_pred ceEEEEEeccCCcEEEeecCC--CEEEE
Confidence 457788888999999999976 67874
No 460
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=42.09 E-value=2.4e+02 Score=30.37 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=21.1
Q ss_pred ceEEEeccCC-CCcCCCCeeEEEECCCCCEEEEEec
Q 012410 334 ELVTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 334 e~l~tl~gH~-~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
..+..+.++. .| -..|+|+|||++.++-+.
T Consensus 166 ~i~~~lP~~~~H~-----g~~l~f~pDG~Lyvs~G~ 196 (399)
T COG2133 166 VIFRGIPKGGHHF-----GGRLVFGPDGKLYVTTGS 196 (399)
T ss_pred EEeecCCCCCCcC-----cccEEECCCCcEEEEeCC
Confidence 3445555543 23 568999999999998764
No 461
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=41.92 E-value=60 Score=21.08 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.4
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEE
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEV 298 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~ 298 (464)
++.+.+++.|+.+...|..+|+.+-.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 36788888999999999999987643
No 462
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.71 E-value=1.2e+02 Score=33.57 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCcEEEEEe-CCeEEEEeCCCc
Q 012410 304 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 334 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge 334 (464)
+.+.++-||||++.||.-. |.+|.+.++.|.
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 3678999999999999999 999999999544
No 463
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.25 E-value=3.6e+02 Score=31.29 Aligned_cols=28 Identities=4% Similarity=0.115 Sum_probs=24.5
Q ss_pred CEEEEEEcCCC---CEEEEeeCCCcEEeccC
Q 012410 437 DITSLFYDEER---NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 437 ~V~slafspDg---~~LaSgs~DgtVrlWd~ 464 (464)
.|..+.|+|.+ .+|+-=..|+++|++|.
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 78889999874 89999999999999973
No 464
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=40.93 E-value=62 Score=36.06 Aligned_cols=58 Identities=5% Similarity=-0.030 Sum_probs=47.7
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 273 NEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
+|+++++|..|-|||+| +-|.--+ .+.+-.+.+--+.-+.+|+.+++.+-.++-|-|+
T Consensus 573 sGyIa~as~kGDirLyD-Rig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~ 631 (776)
T COG5167 573 SGYIAAASRKGDIRLYD-RIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDV 631 (776)
T ss_pred CceEEEecCCCceeeeh-hhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEec
Confidence 57999999999999999 5555443 4566667788888899999999999888999996
No 465
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=40.87 E-value=5.3e+02 Score=28.38 Aligned_cols=28 Identities=4% Similarity=0.198 Sum_probs=17.6
Q ss_pred ceEEEEEcCCCcEEEEEe--CCeEEEEeCC
Q 012410 305 TPSAFIFLYENQLFLTFR--NRTVAVWNFR 332 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s--D~TIklWd~~ 332 (464)
-|+.+..|.|.+.|--+. +|.||-+|++
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 467888998888776666 9999999983
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.53 E-value=4.3e+02 Score=31.87 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=23.5
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeC
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl 215 (464)
|..++|| |.-++||-+...+.|++.-.
T Consensus 38 ~~~~afD-~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 38 PSALAFD-PTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred Ccceeec-cccceEEEEEecccEEEecc
Confidence 4479997 89999999999999999864
No 467
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=40.40 E-value=6.3e+02 Score=29.18 Aligned_cols=158 Identities=14% Similarity=0.225 Sum_probs=87.4
Q ss_pred CCCEeEEEEeCC--------CceeEEEEEcCCCcEEE--EEe--eCCcceeeEEEEccCC-----CeEEE-Ee---CCCe
Q 012410 226 DKHVQEIKIRSS--------SHVPLKILSIEDGTVLK--VFY--HLLHRNKKVDFIEQFN-----EKLLV-KQ---ENEN 284 (464)
Q Consensus 226 ~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~--tl~--~~~~~~~~V~F~~~~~-----~~lla-~s---~D~t 284 (464)
++.|-+|+|.++ ..+.|++||.+.+..-. .+. +...-+++ .|++++. +.+++ .. ..-.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 567778888743 55778888884333222 222 11112233 4555433 44544 33 2245
Q ss_pred EEEEEC--CCCcEEEEc--ccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcC--CCCeeEEEEC
Q 012410 285 LQILDV--RNAELMEVS--RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHP--DCNTNNIYIT 357 (464)
Q Consensus 285 IkIWDv--~tg~~l~~l--~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~--~~~v~svafS 357 (464)
.|+..+ .+..+.++- ..+...+....|.++--.|--..+.+|.+|.+ +=+.+++.+=-..--. ++.|.=.+.+
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence 688888 555566653 23444455556665444444557889999998 6677766553211000 1112223333
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 358 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 358 pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
|| +.|.|. +.+|.|.|+.-.-+|..+.
T Consensus 288 ~n-RvLLs~-------------~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 288 PN-RVLLSV-------------NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CC-eEEEEc-------------CCEEEEEeehhhhhhhhhh
Confidence 33 444443 7899999997777777665
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=39.78 E-value=1.2e+02 Score=31.65 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=49.1
Q ss_pred CceeEEEEEcCCCcEEEEEee--CCcceeeEEEEcc----CCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCce
Q 012410 238 SHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQ----FNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTP 306 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~----~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v 306 (464)
..+-|.++|.. |..++.|.. .+..=|.|+-.|- +.+.||+|- .||+|-.+|..+|+.+-.|......+
T Consensus 220 G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p 294 (336)
T TIGR03118 220 GLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP 294 (336)
T ss_pred CcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence 34578888885 999998863 2233377775443 357899985 79999999999999888777654433
No 469
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=39.15 E-value=4.4e+02 Score=26.91 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=47.3
Q ss_pred EEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-------CCCeEEEEECCCCcEEEEcccC----CCceEEEE
Q 012410 242 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-------ENENLQILDVRNAELMEVSRTE----FMTPSAFI 310 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-------~D~tIkIWDv~tg~~l~~l~gh----~~~v~sv~ 310 (464)
|.+||+++.+=..--.+..+.|..+.|.. +.+|++++ ..-.+-.||..+..--....+- ...|.++.
T Consensus 18 lC~yd~~~~qW~~~g~~i~G~V~~l~~~~--~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNGISGTVTDLQWAS--NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEECCCCEeecCCCCceEEEEEEEEec--CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 55666654433222223346678888864 35666643 2456778998777643332222 24566666
Q ss_pred Ec--CCCcEEEEEe----CCeEEEEe
Q 012410 311 FL--YENQLFLTFR----NRTVAVWN 330 (464)
Q Consensus 311 Fs--pdgqllaS~s----D~TIklWd 330 (464)
+. ...++.+.|. +.-|.-||
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEc
Confidence 53 3445555543 33567776
No 470
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=38.20 E-value=2.8e+02 Score=31.26 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=76.8
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccC------CCeEEEEeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEc-
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF------NEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFL- 312 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~------~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~Fs- 312 (464)
.+.=.|||-|+++-+..-+ .-| =|.|.|.+ .++.|+|=.|..|-=.|.+- |..+.+-... +.+..--||
T Consensus 491 kLykmDIErGkvveeW~~~-ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK-dY~tKn~Fss 567 (776)
T COG5167 491 KLYKMDIERGKVVEEWDLK-DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK-DYKTKNKFSS 567 (776)
T ss_pred cceeeecccceeeeEeecC-Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh-hccccccccc
Confidence 3445588888888777632 222 56666643 35677774444443335543 5444432211 122222333
Q ss_pred ---CCCcEEEEEe-CCeEEEEeCCCceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 313 ---YENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 313 ---pdgqllaS~s-D~TIklWd~~Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
-++-++|.+| -|-|||+|-=|..-+| |.+-... |--|..+.+|++|+..|+ .++-|=|
T Consensus 568 ~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~a-----Ik~idvta~Gk~ilaTCk------------~yllL~d 630 (776)
T COG5167 568 GMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDA-----IKHIDVTANGKHILATCK------------NYLLLTD 630 (776)
T ss_pred cccccCceEEEecCCCceeeehhhcchhhhcCcccccc-----eeeeEeecCCcEEEEeec------------ceEEEEe
Confidence 4555788888 9999999964554433 3333333 667889999999999995 6777777
Q ss_pred C
Q 012410 388 I 388 (464)
Q Consensus 388 i 388 (464)
+
T Consensus 631 ~ 631 (776)
T COG5167 631 V 631 (776)
T ss_pred c
Confidence 5
No 471
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=38.12 E-value=1.2e+02 Score=20.86 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.4
Q ss_pred CCCeEEEEeCCCeEEEEECCC
Q 012410 272 FNEKLLVKQENENLQILDVRN 292 (464)
Q Consensus 272 ~~~~lla~s~D~tIkIWDv~t 292 (464)
.++.+.+++.|+++...|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 358899999999999999764
No 472
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=37.59 E-value=4.7e+02 Score=26.85 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=24.9
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEcccCC
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVSRTEF 303 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~ 303 (464)
++++++++.|+.+...|..+|+.+-......
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCC
Confidence 4889999999999999988999876555443
No 473
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=36.51 E-value=6.5e+02 Score=28.18 Aligned_cols=209 Identities=10% Similarity=0.020 Sum_probs=102.9
Q ss_pred EEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 92 IEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
..+|+.|-...+......+..||..+++-...-+....-.--+++.- +|.+.++ + |.+. -...-.++...|..++
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~-G--G~~~-~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVV-G--GYDS-GSDRLSSVERYDPRTN 359 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEE-c--cccC-CCcccceEEEecCCCC
Confidence 44444444444444455889999888865544433222323344444 3455554 3 2221 0122267777887777
Q ss_pred CCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCc
Q 012410 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGT 251 (464)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~ 251 (464)
+....-++.+. ++-.+|+- -+|++-|.|+.|+.-.+ .+|..+|.++.+
T Consensus 360 ~W~~~a~M~~~---R~~~~v~~--l~g~iYavGG~dg~~~l---------------------------~svE~YDp~~~~ 407 (571)
T KOG4441|consen 360 QWTPVAPMNTK---RSDFGVAV--LDGKLYAVGGFDGEKSL---------------------------NSVECYDPVTNK 407 (571)
T ss_pred ceeccCCccCc---cccceeEE--ECCEEEEEecccccccc---------------------------ccEEEecCCCCc
Confidence 76543344432 22224544 38999999999953211 122233332221
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEE-EeCC------CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLV-KQEN------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D------~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D 323 (464)
--..-... .....++-.. .+++|.+ ||.| .++..+|..+++....-.--+..-..-+-..++.+.+.|+ |
T Consensus 408 W~~va~m~-~~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 408 WTPVAPML-TRRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred ccccCCCC-cceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCcc
Confidence 11000000 0111111112 2355554 6633 4678999999886653221111111113346788888888 7
Q ss_pred C-----eEEEEeCCCceEEEe
Q 012410 324 R-----TVAVWNFRGELVTSF 339 (464)
Q Consensus 324 ~-----TIklWd~~Ge~l~tl 339 (464)
+ +|..+|.+..-....
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred CCCccceEEEEcCCCCceeEc
Confidence 6 477888754433333
No 474
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=35.19 E-value=5.6e+02 Score=27.02 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=66.8
Q ss_pred ccCceEEEEeCCCCc--EEEEecCCCcEEEEeC--CCCeEEEEecCCCE--eEEEE--eC-----------CCceeEEEE
Q 012410 185 LKWPGFVEFDDVNGK--VLTYSAQDSIYKVFDL--KNYTMLYSISDKHV--QEIKI--RS-----------SSHVPLKIL 245 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk--~LaSgs~D~tiKlWdl--~tg~~l~tl~~~~V--~~Vaf--s~-----------s~d~tIklW 245 (464)
..|-+.+|+. ||+ +++.-|+-.+..-|.- .+|-++..+..+.| ..++| || +..+.|.-+
T Consensus 151 RCHLNGlA~~--~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdgrLwvldsgtGev~~v 228 (335)
T TIGR03032 151 RCHLNGMALD--DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQGKLWLLNSGRGELGYV 228 (335)
T ss_pred ceeecceeee--CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCCeEEEEECCCCEEEEE
Confidence 4566688885 564 4444455434555532 13334444333322 23333 22 455666666
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-e---CCCe----------------EEEEECCCCcEEEEcc--cCC
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-Q---ENEN----------------LQILDVRNAELMEVSR--TEF 303 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s---~D~t----------------IkIWDv~tg~~l~~l~--gh~ 303 (464)
|.++|+......- -+..+.++|. |..+++| | ++++ |.+-|++||+.++.++ +--
T Consensus 229 D~~~G~~e~Va~v-pG~~rGL~f~---G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v 304 (335)
T TIGR03032 229 DPQAGKFQPVAFL-PGFTRGLAFA---GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVI 304 (335)
T ss_pred cCCCCcEEEEEEC-CCCCccccee---CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCce
Confidence 7666654433221 1445667764 3445444 2 3433 5677888888877543 444
Q ss_pred CceEEEEEcCCCc
Q 012410 304 MTPSAFIFLYENQ 316 (464)
Q Consensus 304 ~~v~sv~Fspdgq 316 (464)
..+..|+..|+=+
T Consensus 305 ~EifdV~vLPg~r 317 (335)
T TIGR03032 305 EEIYDVAVLPGVR 317 (335)
T ss_pred eEEEEEEEecCCC
Confidence 5677777777643
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.54 E-value=6.4e+02 Score=30.44 Aligned_cols=55 Identities=18% Similarity=0.404 Sum_probs=34.3
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEE-Ec-ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cce
Q 012410 274 EKLLVKQENENLQILDVRNAELME-VS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL 335 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~-~l-~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~ 335 (464)
..++.+..-+++-+|+ +...+.. -+ ..+... +++|..++++- |+++..||++ |++
T Consensus 210 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 210 TKILIGFNRGLVVIKD-RASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred CCcceeeeeeeeeehh-cccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 3445555555666776 3333322 11 111111 88999999999 9999999995 654
No 476
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=33.85 E-value=1.7e+02 Score=24.66 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=32.2
Q ss_pred CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC
Q 012410 283 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF 331 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~ 331 (464)
+.|--||. +++..+.. -...+..++++||++.|-.++ .++|.++..
T Consensus 36 ~~Vvyyd~--~~~~~va~-g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 36 GNVVYYDG--KEVKVVAS-GFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred ceEEEEeC--CEeEEeec-cCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 45556663 23433333 356788999999999877776 899999875
No 477
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=33.80 E-value=6.1e+02 Score=29.29 Aligned_cols=158 Identities=21% Similarity=0.289 Sum_probs=85.0
Q ss_pred cceEEEEe--ccceeehhccCCeEEeeeccccc--EeeEeecCCC-ceEEEEEEe-----eCCCEEEEEEeecCCCCccc
Q 012410 89 TKVIEIVA--ARDIVFALAHSGVCAAFSRETNR--RICFLNVSPD-EVIRSLFYN-----KNNDSLITVSVYASDNFSSL 158 (464)
Q Consensus 89 s~v~~~~~--ag~~l~~l~~~g~~~~~~~~~g~--~l~~ln~~~~-~~i~Sv~fs-----~~g~~l~svSa~~sddfs~L 158 (464)
.++..|-+ .++.|.++.++|.++.|+...+. ..-.+...+. ..+++-|-+ -..+.+.+++...+..
T Consensus 130 ~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k---- 205 (670)
T PF10395_consen 130 DKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK---- 205 (670)
T ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc----
Confidence 34554444 49999999999999999972211 1112222222 234442222 2246677767433333
Q ss_pred ceeeEEEEEeccCCCCCccccee--eccccCce-EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-C----C---
Q 012410 159 KCRSTKIEYIRRGKPDSGFALFE--SESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D----K--- 227 (464)
Q Consensus 159 ~~~ti~l~~i~~G~~~~~~~l~~--~~~~~~~~-~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~----~--- 227 (464)
-..++..+ ...-...+.+.. .+..+-.. ..++ .+|++.-. .+++|-+|++-+-+..++++ . .
T Consensus 206 --~~ykL~~l-~~~~~~~~El~s~~~e~~~~~~s~f~Y--~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~ 278 (670)
T PF10395_consen 206 --LSYKLISL-SNESSSIFELSSTILENFGLEDSKFCY--QFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESD 278 (670)
T ss_pred --EEEEEEEe-ccCCcceEEeehheeccCCcccceEEE--eCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccc
Confidence 45555555 111111112210 11111011 3555 48887666 78899999999999888775 1 1
Q ss_pred CEeEEEE-eC-----CCceeEEEEEcCCCcEEEEEe
Q 012410 228 HVQEIKI-RS-----SSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 228 ~V~~Vaf-s~-----s~d~tIklWdi~tG~~l~tl~ 257 (464)
.+.+++- +| +....|.|+|+.=..+|.+++
T Consensus 279 ~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 279 DLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 2333322 12 255678888887666776665
No 478
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=32.27 E-value=45 Score=25.65 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.6
Q ss_pred EEEECCCCCEEEEEe
Q 012410 353 NIYITSDQDLIISYC 367 (464)
Q Consensus 353 svafSpDg~~LaSgs 367 (464)
-+|.++||++|+.|.
T Consensus 35 i~Y~~~dg~yli~G~ 49 (57)
T PF10411_consen 35 ILYVDEDGRYLIQGQ 49 (57)
T ss_dssp EEEEETTSSEEEES-
T ss_pred EEEEcCCCCEEEEeE
Confidence 488999999999873
No 479
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=32.24 E-value=1.5e+02 Score=22.93 Aligned_cols=18 Identities=6% Similarity=-0.007 Sum_probs=15.3
Q ss_pred eEEEEEEeeCCCEEEEEE
Q 012410 131 VIRSLFYNKNNDSLITVS 148 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svS 148 (464)
.+++++..|||++|+..+
T Consensus 2 ~~~~~~~q~DGkIlv~G~ 19 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGY 19 (55)
T ss_pred ceEEEEECCCCcEEEEEE
Confidence 478999999999998844
No 480
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=31.86 E-value=79 Score=21.86 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.5
Q ss_pred eeehhccCCeEEeeecccccEeeEeecCC
Q 012410 100 IVFALAHSGVCAAFSRETNRRICFLNVSP 128 (464)
Q Consensus 100 ~l~~l~~~g~~~~~~~~~g~~l~~ln~~~ 128 (464)
.|.+...+|.+.|.|..||+.+-..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45555899999999999999998876544
No 481
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=31.80 E-value=77 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.233 Sum_probs=20.3
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEc
Q 012410 275 KLLVKQENENLQILDVRNAELMEVS 299 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~~l~~l 299 (464)
.+.+++.|+.|.-.|..||+.+-..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEee
Confidence 4566789999999999999987543
No 482
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.48 E-value=8.8e+02 Score=28.17 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCcEEEEEeCCeEEEEeC------C-----Cce---EEEec-cCCC--CcCCCCeeEEEECCCC---CEEE
Q 012410 305 TPSAFIFLYENQLFLTFRNRTVAVWNF------R-----GEL---VTSFE-DHLL--WHPDCNTNNIYITSDQ---DLII 364 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~sD~TIklWd~------~-----Ge~---l~tl~-gH~~--~~~~~~v~svafSpDg---~~La 364 (464)
.|..|.+||+|.++|-.+.+.|-|-.+ . |+- .+++. |... ......|.-+.|+|.+ ..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 577888999999999988555555443 1 221 11211 1000 0011127788888863 5555
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCC
Q 012410 365 SYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
-=.. |+++|++|+...
T Consensus 166 vLts-----------dn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTS-----------DNTLRLYDISDP 181 (717)
T ss_pred EEec-----------CCEEEEEecCCC
Confidence 4432 999999999764
No 483
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=30.32 E-value=6.1e+02 Score=25.91 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=66.5
Q ss_pred CeEEEEeCCCceEEEeccCC---------CCcCCCCeeEEEECCCCCEEEEEecCCCccccc-cC------CCCeEEEEe
Q 012410 324 RTVAVWNFRGELVTSFEDHL---------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM-EG------SAGSINVSS 387 (464)
Q Consensus 324 ~TIklWd~~Ge~l~tl~gH~---------~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~-~s------~DgtIklWd 387 (464)
|.+-+.|-+.+.+.++.... ... +..-.+.+.|||..|++.....+.|-.. ++ -|+.|.--|
T Consensus 25 G~~~~lD~~y~~i~~v~~~~~~~~~~~~~~~~--~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiD 102 (299)
T PF14269_consen 25 GSYVILDSSYEVIWNVSAGNDFGTPDGEPGSY--ADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEID 102 (299)
T ss_pred ceEEEECCCCcEEEEEECCCcccccccccCcc--CCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEec
Confidence 44556665666666555444 111 1134677899999999655432222211 11 256666778
Q ss_pred CCCCeEEEEEccCCCCCCccccc--CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 388 ILTGKCLAKINATNCSPKVDDEL--GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 388 i~tG~cl~tl~gh~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
+.||+.|..+..-.- +...... .....+ ....+..+.-.=.|.+|...++|++|+|.=.=.+|
T Consensus 103 i~TgevlfeW~a~DH-~~~~~~~~~~~~~~~--------~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i 167 (299)
T PF14269_consen 103 IETGEVLFEWSASDH-VDPNDSYDSQDPLPG--------SGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTI 167 (299)
T ss_pred cCCCCEEEEEEhhhe-ecccccccccccccC--------CCcCCCCCCCccEeeeeeecCCccEEEEecccCEE
Confidence 999999999877542 1111110 000000 00000111111268899999999999987544333
No 484
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=30.28 E-value=1.7e+02 Score=24.75 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=33.1
Q ss_pred EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe---CCeEEEE
Q 012410 279 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVW 329 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s---D~TIklW 329 (464)
+..+|-+--||..|++....+.+ -..+..|+++||++.++-+- -+-.|.|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 34567778899999986555554 34789999999999666654 4455555
No 485
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=30.14 E-value=2.5e+02 Score=32.53 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=62.4
Q ss_pred cceeehhccCCeEEeeeccc-------c-------------cEeeEeecCCCceEEEEEEe--eCCCEEEEEEeecCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRET-------N-------------RRICFLNVSPDEVIRSLFYN--KNNDSLITVSVYASDNF 155 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~-------g-------------~~l~~ln~~~~~~i~Sv~fs--~~g~~l~svSa~~sddf 155 (464)
.++|.++..+|.+-+|-+++ . ++...++ -..-.|++++. .....+|+ | +..
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAV-S---sNs- 186 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAV-S---SNS- 186 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEE-e---cCC-
Confidence 78999999999999995311 0 1222232 33358999998 65555555 4 454
Q ss_pred cccceeeEEEEEeccCCCCC-cccceeeccccCceEEEEeC----CCCc-EEEEecCCCcEEEEeC
Q 012410 156 SSLKCRSTKIEYIRRGKPDS-GFALFESESLKWPGFVEFDD----VNGK-VLTYSAQDSIYKVFDL 215 (464)
Q Consensus 156 s~L~~~ti~l~~i~~G~~~~-~~~l~~~~~~~~~~~VaFs~----pdGk-~LaSgs~D~tiKlWdl 215 (464)
+.|.|+..+..+... ..+-++ +..-+.+|+|-+ ++|. .|++++-.|++-+|++
T Consensus 187 -----~~VTVFaf~l~~~r~~~~~s~~--~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 187 -----QEVTVFAFALVDERFYHVPSHQ--HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -----ceEEEEEEeccccccccccccc--cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 677777775532111 001111 112233777753 2232 7888999999888877
No 486
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=29.92 E-value=1.6e+02 Score=24.70 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=23.4
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 352 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+.|+++||+++|.-++. ..++|.++...
T Consensus 57 NGI~~s~~~k~lyVa~~----------~~~~I~vy~~~ 84 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASS----------LAHSIHVYKRH 84 (86)
T ss_pred ceEEEcCCCCEEEEEec----------cCCeEEEEEec
Confidence 68999999999988765 47899998754
No 487
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=28.64 E-value=2.8e+02 Score=23.59 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=17.9
Q ss_pred CceEEEEEcCCCcEEEEEeCCeEEEEe
Q 012410 304 MTPSAFIFLYENQLFLTFRNRTVAVWN 330 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~sD~TIklWd 330 (464)
..+..+.+.+||.+++-..++. -||.
T Consensus 85 ~~~~~~~L~ddGnlvl~~~~~~-~~W~ 110 (114)
T smart00108 85 NGNYVLVLLDDGNLVIYDSDGN-FLWQ 110 (114)
T ss_pred CCceEEEEeCCCCEEEECCCCC-EEeC
Confidence 3455667889999888766554 3676
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=28.50 E-value=4.7e+02 Score=24.09 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=66.6
Q ss_pred EEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEc
Q 012410 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIE 270 (464)
Q Consensus 192 aFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~ 270 (464)
.|+ ....-||.++.-+.|-|.+....... .. ..+.+|+++++ ++.+..+. +. |-|
T Consensus 5 kfD-G~~pcL~~aT~~gKV~IH~ph~~~~~-------~~------~~~~~i~~LNi--n~~italaaG~--------l~~ 60 (136)
T PF14781_consen 5 KFD-GVHPCLACATTGGKVFIHNPHERGQR-------TG------RQDSDISFLNI--NQEITALAAGR--------LKP 60 (136)
T ss_pred EeC-CCceeEEEEecCCEEEEECCCccccc-------cc------cccCceeEEEC--CCceEEEEEEe--------cCC
Confidence 353 45556777766666666554321110 00 14566777777 34444443 21 111
Q ss_pred c-CCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEc----CCCcEEEEEeCCeEEEEeCCCceE
Q 012410 271 Q-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL----YENQLFLTFRNRTVAVWNFRGELV 336 (464)
Q Consensus 271 ~-~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs----pdgqllaS~sD~TIklWd~~Ge~l 336 (464)
. ..+.|++|+ .-+|..|||....-+-. +.-.+.|.++.|- .+..+++.|++-.|.-.|.+|+.+
T Consensus 61 ~~~~D~LliGt-~t~llaYDV~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 61 DDGRDCLLIGT-QTSLLAYDVENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred CCCcCEEEEec-cceEEEEEcccCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 1 235666665 45788999987653211 1122567777762 356777777788888888777653
No 489
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=28.20 E-value=74 Score=24.64 Aligned_cols=19 Identities=5% Similarity=0.053 Sum_probs=16.8
Q ss_pred CEEEEEEcCCCCEEEEeeC
Q 012410 437 DITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 437 ~V~slafspDg~~LaSgs~ 455 (464)
.+++++.-|||++|+.|+.
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 5789999999999999964
No 490
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=27.80 E-value=1.5e+02 Score=34.39 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=30.8
Q ss_pred chhhhccccceEEEEec--cceeehhccCCeEEeeecccccEeeE
Q 012410 81 VLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF 123 (464)
Q Consensus 81 ~l~~l~~~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ 123 (464)
.++.+.-...|..+... +.+|+...+||.|+.+|+.|-+.+..
T Consensus 252 ~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~ 296 (753)
T PF11635_consen 252 RLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNE 296 (753)
T ss_pred EecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcc
Confidence 35555555667777666 77888888999999998777665443
No 491
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.56 E-value=9e+02 Score=27.04 Aligned_cols=117 Identities=11% Similarity=0.149 Sum_probs=69.8
Q ss_pred EeEEEEe-CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEc----ccC
Q 012410 229 VQEIKIR-SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVS----RTE 302 (464)
Q Consensus 229 V~~Vafs-~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l----~gh 302 (464)
+.++..+ |+.|.++-+=.+.. +.++++.|+++ .++++-+ .|++|.+.+....+....+ +..
T Consensus 45 atgvvvkgpndDVpiSfdm~d~-----------G~I~SIkFSlD--nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 45 ATGVVVKGPNDDVPISFDMDDK-----------GEIKSIKFSLD--NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred eeEEEEeCCCCCCCceeeecCC-----------CceeEEEeccC--cceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 3344443 46777877654544 35678889995 5666655 9999999996444433221 222
Q ss_pred CCceEEEEEcCCCcEEEEEeCCeEEEEeCC--CceEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 012410 303 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 364 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~sD~TIklWd~~--Ge~l~tl~gH~~~~~~~~v~svafSpDg~~La 364 (464)
+..+-.|.|+.. .-+|--+|.-|.++-+. -+-++.-+.|..- |+--++.|+-..+.
T Consensus 112 ~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~n-----vnWy~yc~et~v~L 169 (657)
T KOG2377|consen 112 NANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLN-----VNWYMYCPETAVIL 169 (657)
T ss_pred cceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccC-----ccEEEEccccceEe
Confidence 344667777766 44555567778888863 3334444444432 44466677766543
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=26.23 E-value=8.3e+02 Score=26.19 Aligned_cols=180 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred eEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC--CCe---EEEEe--CC--CeEEEE--ECCCCcEEEE
Q 012410 230 QEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF--NEK---LLVKQ--EN--ENLQIL--DVRNAELMEV 298 (464)
Q Consensus 230 ~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~--~~~---lla~s--~D--~tIkIW--Dv~tg~~l~~ 298 (464)
.++-+-.+...-+.++|++ |+.++.+.. .+..-|+-...+ +++ |++.+ .+ .+|+|| |-.+|.+..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Q ss_pred ------cccCCCceEEEEE---cCCCcEEEEEe--CCeEEEEe--------CCCceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 299 ------SRTEFMTPSAFIF---LYENQLFLTFR--NRTVAVWN--------FRGELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 299 ------l~gh~~~v~sv~F---spdgqllaS~s--D~TIklWd--------~~Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
+......++.+++ ..+|++.|-.+ +|.+.-|- ++++++++|..-.. +..++.-..
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ------~EGCVVDDe 218 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQ------PEGCVVDDE 218 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------EEEEEEETT
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCc------ceEEEEecc
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCC-----CCeEEEEEcc--CCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSIL-----TGKCLAKINA--TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~-----tG~cl~tl~g--h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
...|.-+=+ |.-|.-++.. +++.+....+ ...
T Consensus 219 ~g~LYvgEE-----------~~GIW~y~Aep~~~~~~~~v~~~~g~~l~a------------------------------ 257 (381)
T PF02333_consen 219 TGRLYVGEE-----------DVGIWRYDAEPEGGNDRTLVASADGDGLVA------------------------------ 257 (381)
T ss_dssp TTEEEEEET-----------TTEEEEEESSCCC-S--EEEEEBSSSSB-S------------------------------
T ss_pred cCCEEEecC-----------ccEEEEEecCCCCCCcceeeeccccccccc------------------------------
Q ss_pred ccccCEEEEEE----cCCCCEEEEeeCCCcEEecc
Q 012410 433 EALEDITSLFY----DEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 433 ~~l~~V~slaf----spDg~~LaSgs~DgtVrlWd 463 (464)
+|..|+. .-+|=.|||.=.+++..||+
T Consensus 258 ----DvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 258 ----DVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp -----EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred ----CccceEEEecCCCCeEEEEEcCCCCeEEEEe
No 493
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.98 E-value=8.7 Score=42.13 Aligned_cols=144 Identities=10% Similarity=0.138 Sum_probs=85.9
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE---------eCCCceeEEEEEcCCCcEEEEEe-e
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI---------RSSSHVPLKILSIEDGTVLKVFY-H 258 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf---------s~s~d~tIklWdi~tG~~l~tl~-~ 258 (464)
....- |+|.-|+-+..+.+++.+|- -|+....+. ....-+++. -.....|+.|||+.+- --++++ +
T Consensus 39 ~~~w~-~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e-ytqqLE~g 115 (615)
T KOG2247|consen 39 IHRWR-PEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE-YTQQLESG 115 (615)
T ss_pred eeeEe-cCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh-hHHHHhcc
Confidence 34443 67777888888888988884 344332221 111111111 1234579999999742 223333 1
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEE
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVT 337 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~ 337 (464)
..+...=..+++ ....++++-.-|++.|++.++.+.+-+...|+-.+..++..++++.+..+.|.++.+=.-.|+-..
T Consensus 116 g~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qegeta~ 193 (615)
T KOG2247|consen 116 GTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGETAS 193 (615)
T ss_pred CcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhhccceee
Confidence 111111122333 223445566789999999888887777666999999999999999877666876655554455433
No 494
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=25.73 E-value=8.8e+02 Score=26.28 Aligned_cols=133 Identities=16% Similarity=0.289 Sum_probs=84.5
Q ss_pred CCcEEEEecCCCcEEEEeCCCCe-----EEEEec-CCCEeEEEEe---C-CCc--------eeEEEEEc--CCCc-----
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYT-----MLYSIS-DKHVQEIKIR---S-SSH--------VPLKILSI--EDGT----- 251 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~-----~l~tl~-~~~V~~Vafs---~-s~d--------~tIklWdi--~tG~----- 251 (464)
+...|+.||..|.+||++-..+. ++.... ...|..|+.- + +.+ ..+-|+.+ .+|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 44578889999999999976433 333222 4567666652 1 122 23444444 2233
Q ss_pred --EEE-EEeeCCcce-eeEEEEccCC----CeEEEEeCCCeEEEEECCCCcE-EEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 252 --VLK-VFYHLLHRN-KKVDFIEQFN----EKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 252 --~l~-tl~~~~~~~-~~V~F~~~~~----~~lla~s~D~tIkIWDv~tg~~-l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
-|. .++|++.+. +....-|..+ +.|.+=+.||++.+++ +.... ...+.+ +--|-.++|.|.-..|++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~fe-qe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFE-QESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEe-CCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 222 233554443 6666666322 3566678999999999 44444 445555 77788899999999999998
Q ss_pred -CCeEEEEeC
Q 012410 323 -NRTVAVWNF 331 (464)
Q Consensus 323 -D~TIklWd~ 331 (464)
+.++.-+..
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 888888873
No 495
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=25.30 E-value=3.1e+02 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=17.8
Q ss_pred ceEEEEEcCCCcEEEEEeCCeEEEEeC
Q 012410 305 TPSAFIFLYENQLFLTFRNRTVAVWNF 331 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~sD~TIklWd~ 331 (464)
.+..+.+.+||.+.+-..++.+ ||..
T Consensus 87 ~~~~~~L~ddGnlvl~~~~~~~-~W~S 112 (116)
T cd00028 87 GNYVLVLLDDGNLVLYDSDGNF-LWQS 112 (116)
T ss_pred CceEEEEeCCCCEEEECCCCCE-EEcC
Confidence 4455667899998887765544 6763
No 496
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.49 E-value=8.2e+02 Score=28.53 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=54.0
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEcccCCC---ceEEEEEcCCCcEEEEEeCC----------eEEEEeC-CCceEEEe
Q 012410 274 EKLLVKQENENLQILDVRNAELMEVSRTEFM---TPSAFIFLYENQLFLTFRNR----------TVAVWNF-RGELVTSF 339 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~---~v~sv~FspdgqllaS~sD~----------TIklWd~-~Ge~l~tl 339 (464)
..++-. +|+.+..++...+.-.-.+.++.. ...+..++||.+.++.+.|. .-.++++ +|+
T Consensus 65 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~----- 138 (755)
T KOG2100|consen 65 QELLYR-EDGNIVVSNALYGLSSVPLTNSTFGRLRYSSDLISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE----- 138 (755)
T ss_pred ceeecc-cCCceEeecccCcccEEEecccchhhccccccccChhhhhheeccCcccccceeeEEEEEEEEcCCCC-----
Confidence 455556 789999999888876554444321 11223578999988887752 4566676 455
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
+.|..-..+.++..+.|||.|+.|+=.
T Consensus 139 ~~~~~~~~~~~~~~~~wsp~~~~l~yv 165 (755)
T KOG2100|consen 139 KLHPPEYEGSKIQYASWSPLGNDLAYV 165 (755)
T ss_pred cccCcccCCCeeEEEEEcCCCCEEEEE
Confidence 222222222235789999999766643
No 497
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=24.34 E-value=2.1e+02 Score=31.78 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred EEEECCCCCEEEEEecCCCccc-cccCCCCeEEEE-----------eCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQ-WMEGSAGSINVS-----------SILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~-~~~s~DgtIklW-----------di~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
+|+|+|+|.+++.--.+..... .-...+|.+.-. +..+|+..+-+.+...
T Consensus 440 NL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~g------------------ 501 (524)
T PF05787_consen 440 NLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNG------------------ 501 (524)
T ss_pred ceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCC------------------
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
..++.++|+|||++|.
T Consensus 502 ---------------aE~tG~~fspDg~tlF 517 (524)
T PF05787_consen 502 ---------------AEITGPCFSPDGRTLF 517 (524)
T ss_pred ---------------cccccceECCCCCEEE
No 498
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=24.26 E-value=5.7e+02 Score=23.56 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=22.7
Q ss_pred CEEEEEEcCCC------CEEEEeeCCCcEEecc
Q 012410 437 DITSLFYDEER------NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 437 ~V~slafspDg------~~LaSgs~DgtVrlWd 463 (464)
.|.++++||-| -.||.-..++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 78899999955 3688888999999985
No 499
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=23.96 E-value=1.3e+02 Score=21.18 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCCEEEEeeCCC
Q 012410 437 DITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 437 ~V~slafspDg~~LaSgs~Dg 457 (464)
...+|+++++|+..++|..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 678999999999999998776
No 500
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=23.92 E-value=1.2e+03 Score=27.14 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=43.6
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc----cc------------CCC---ceEEEEEcCCCcEEEEE
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS----RT------------EFM---TPSAFIFLYENQLFLTF 321 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l----~g------------h~~---~v~sv~FspdgqllaS~ 321 (464)
..|-+|+-.. .+..+++.-+||+|.+.|-.|-+.+... .. |+. .+--++|||.+-.++.-
T Consensus 260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 4566666544 3556666889999999998876554332 00 110 11126799999999988
Q ss_pred e-CCeEE
Q 012410 322 R-NRTVA 327 (464)
Q Consensus 322 s-D~TIk 327 (464)
. |+.++
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8 88776
Done!