Query 012410
Match_columns 464
No_of_seqs 242 out of 509
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 3.1E-50 1.1E-54 396.5 38.1 281 118-464 22-319 (321)
2 1vyh_C Platelet-activating fac 100.0 1.1E-50 3.8E-55 411.9 35.6 279 119-464 99-409 (410)
3 1nr0_A Actin interacting prote 100.0 6.1E-50 2.1E-54 426.9 43.0 348 90-464 61-565 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1.8E-49 6.3E-54 411.0 42.5 336 89-463 222-577 (577)
5 1nr0_A Actin interacting prote 100.0 4.8E-50 1.6E-54 427.7 36.2 329 98-463 30-476 (611)
6 1got_B GT-beta; complex (GTP-b 100.0 6.6E-49 2.3E-53 387.3 39.3 282 117-463 44-340 (340)
7 2pbi_B Guanine nucleotide-bind 100.0 1.3E-47 4.3E-52 382.2 40.0 281 119-463 55-354 (354)
8 4g56_B MGC81050 protein; prote 100.0 1.5E-48 5E-53 389.9 32.6 305 98-464 16-341 (357)
9 3iz6_a 40S ribosomal protein R 100.0 4.6E-49 1.6E-53 394.8 27.9 295 109-464 47-373 (380)
10 2ynn_A Coatomer subunit beta'; 100.0 7.9E-48 2.7E-52 374.0 34.6 275 120-460 5-297 (304)
11 4gqb_B Methylosome protein 50; 100.0 1.9E-47 6.5E-52 382.9 37.9 285 111-464 17-329 (344)
12 2ymu_A WD-40 repeat protein; u 100.0 2.9E-47 9.8E-52 394.6 40.1 336 89-463 181-536 (577)
13 1erj_A Transcriptional repress 100.0 6E-47 2E-51 381.1 37.6 274 127-463 62-386 (393)
14 3frx_A Guanine nucleotide-bind 100.0 7.5E-46 2.6E-50 363.0 39.7 289 119-464 8-315 (319)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.6E-46 1.6E-50 368.3 35.2 283 118-464 5-333 (345)
16 4ery_A WD repeat-containing pr 100.0 5.8E-45 2E-49 350.9 39.1 282 119-464 14-310 (312)
17 2hes_X YDR267CP; beta-propelle 100.0 9.8E-45 3.4E-49 356.7 35.6 282 117-464 3-326 (330)
18 1r5m_A SIR4-interacting protei 100.0 8.9E-45 3E-49 356.0 34.3 316 82-464 39-423 (425)
19 4aow_A Guanine nucleotide-bind 100.0 9.4E-44 3.2E-48 341.0 40.3 295 115-464 25-335 (340)
20 2xzm_R RACK1; ribosome, transl 100.0 3.9E-44 1.3E-48 353.0 36.8 291 118-463 11-337 (343)
21 1vyh_C Platelet-activating fac 100.0 1.4E-44 4.9E-49 367.0 33.9 269 88-388 108-409 (410)
22 2ynn_A Coatomer subunit beta'; 100.0 2.6E-44 8.9E-49 349.2 33.5 227 186-464 14-257 (304)
23 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-44 4.1E-49 406.9 33.2 337 89-463 18-658 (902)
24 2pm9_A Protein WEB1, protein t 100.0 8.9E-46 3E-50 365.6 20.9 333 98-464 35-412 (416)
25 3ow8_A WD repeat-containing pr 100.0 1.6E-43 5.4E-48 348.6 33.7 267 89-388 33-319 (321)
26 1gxr_A ESG1, transducin-like e 100.0 5E-42 1.7E-46 326.9 40.5 310 89-464 10-335 (337)
27 3gre_A Serine/threonine-protei 100.0 3.9E-44 1.3E-48 360.0 25.8 324 112-463 47-437 (437)
28 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-42 5.7E-47 392.6 41.1 354 89-464 616-1156(1249)
29 4gqb_B Methylosome protein 50; 100.0 4.5E-43 1.5E-47 351.1 32.0 274 90-393 32-334 (344)
30 1got_B GT-beta; complex (GTP-b 100.0 5.3E-42 1.8E-46 338.0 37.6 269 89-387 56-340 (340)
31 3zwl_B Eukaryotic translation 100.0 7.6E-42 2.6E-46 328.9 37.6 286 122-464 26-344 (369)
32 4h5i_A Guanine nucleotide-exch 100.0 9.7E-43 3.3E-47 349.4 30.9 276 130-464 15-341 (365)
33 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-44 8.9E-49 382.9 18.5 304 99-464 174-515 (524)
34 1pgu_A Actin interacting prote 100.0 1.1E-41 3.7E-46 352.4 37.3 311 89-464 161-612 (615)
35 4g56_B MGC81050 protein; prote 100.0 1.7E-42 5.6E-47 346.2 29.8 273 90-391 44-344 (357)
36 3ei3_B DNA damage-binding prot 100.0 4.6E-42 1.6E-46 339.1 31.6 295 116-464 61-380 (383)
37 3k26_A Polycomb protein EED; W 100.0 1.7E-42 5.9E-47 333.9 27.6 280 122-464 11-364 (366)
38 3odt_A Protein DOA1; ubiquitin 100.0 8E-41 2.7E-45 316.2 38.0 275 116-464 5-294 (313)
39 3dm0_A Maltose-binding peripla 100.0 2.4E-41 8.2E-46 364.2 38.9 296 123-464 377-691 (694)
40 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.8E-41 3.4E-45 338.1 39.7 296 92-464 123-440 (445)
41 2pbi_B Guanine nucleotide-bind 100.0 7.4E-41 2.5E-45 333.3 37.9 269 90-387 66-354 (354)
42 3iz6_a 40S ribosomal protein R 100.0 8.7E-42 3E-46 342.0 30.3 276 89-392 67-377 (380)
43 4ggc_A P55CDC, cell division c 100.0 8.6E-41 3E-45 317.4 35.3 268 132-464 28-313 (318)
44 1r5m_A SIR4-interacting protei 100.0 3.4E-41 1.2E-45 330.5 33.1 290 109-464 26-359 (425)
45 2pm7_B Protein transport prote 100.0 1.6E-41 5.4E-46 328.6 29.8 247 122-463 3-282 (297)
46 3vl1_A 26S proteasome regulato 100.0 9E-42 3.1E-46 338.9 28.2 302 96-464 66-417 (420)
47 3frx_A Guanine nucleotide-bind 100.0 5.9E-41 2E-45 328.3 33.5 273 90-392 19-319 (319)
48 3sfz_A APAF-1, apoptotic pepti 100.0 1E-42 3.4E-47 394.4 23.8 317 89-464 841-1247(1249)
49 3i2n_A WD repeat-containing pr 100.0 3E-41 1E-45 324.9 30.1 285 119-464 8-351 (357)
50 4gga_A P55CDC, cell division c 100.0 9.5E-41 3.2E-45 337.6 34.7 269 131-464 107-393 (420)
51 4e54_B DNA damage-binding prot 100.0 1E-41 3.5E-46 346.9 27.3 291 126-464 116-428 (435)
52 1erj_A Transcriptional repress 100.0 7.2E-41 2.4E-45 336.8 32.9 270 88-390 64-389 (393)
53 1sq9_A Antiviral protein SKI8; 100.0 8.3E-41 2.8E-45 328.8 31.9 291 123-464 11-393 (397)
54 3v7d_B Cell division control p 100.0 6.6E-40 2.3E-44 331.8 38.8 300 91-462 125-459 (464)
55 2pm9_A Protein WEB1, protein t 100.0 8.1E-42 2.8E-46 337.3 23.5 276 130-464 13-335 (416)
56 2w18_A PALB2, fancn, partner a 100.0 1.5E-40 5.1E-45 339.9 33.0 262 105-463 60-354 (356)
57 2hes_X YDR267CP; beta-propelle 100.0 1.8E-40 6E-45 326.4 32.4 274 89-390 15-328 (330)
58 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-40 9E-45 327.1 33.2 276 90-397 18-342 (345)
59 4a11_B DNA excision repair pro 100.0 1.8E-40 6.2E-45 324.4 30.7 303 103-464 18-363 (408)
60 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-40 6.5E-45 321.9 30.6 289 128-463 7-358 (372)
61 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-40 3.9E-45 374.6 32.6 319 126-463 14-516 (902)
62 2xzm_R RACK1; ribosome, transl 100.0 3.5E-40 1.2E-44 324.8 31.1 267 90-392 23-342 (343)
63 3bg1_A Protein SEC13 homolog; 100.0 1.8E-41 6E-46 331.6 21.5 247 123-463 7-290 (316)
64 1pgu_A Actin interacting prote 100.0 1.1E-39 3.9E-44 337.3 35.2 336 90-463 20-399 (615)
65 4ery_A WD repeat-containing pr 100.0 4.9E-39 1.7E-43 309.5 36.6 269 89-388 24-310 (312)
66 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-39 9.7E-44 348.3 37.6 340 90-463 15-420 (814)
67 3vl1_A 26S proteasome regulato 100.0 4E-40 1.4E-44 327.0 28.5 265 132-463 59-362 (420)
68 3dwl_C Actin-related protein 2 100.0 5.8E-41 2E-45 329.1 19.4 301 128-464 10-377 (377)
69 3vu4_A KMHSV2; beta-propeller 100.0 6.4E-39 2.2E-43 319.5 31.1 296 112-463 3-333 (355)
70 4aow_A Guanine nucleotide-bind 100.0 3.7E-38 1.3E-42 302.1 34.4 274 85-392 34-339 (340)
71 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-40 1.8E-44 349.8 21.9 267 117-464 123-426 (524)
72 3dw8_B Serine/threonine-protei 100.0 8.4E-39 2.9E-43 319.4 28.4 312 127-463 26-443 (447)
73 3v7d_B Cell division control p 100.0 1.2E-37 4.2E-42 315.1 37.2 270 120-464 113-419 (464)
74 3mmy_A MRNA export factor; mRN 100.0 2.5E-38 8.4E-43 304.3 30.4 285 109-463 20-343 (368)
75 1gxr_A ESG1, transducin-like e 100.0 4.6E-38 1.6E-42 299.6 31.2 268 128-464 8-294 (337)
76 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-38 7.8E-43 321.0 29.7 260 127-464 131-412 (435)
77 4aez_A CDC20, WD repeat-contai 100.0 9.1E-38 3.1E-42 313.3 33.7 267 132-464 96-378 (401)
78 3mkq_A Coatomer beta'-subunit; 100.0 5.7E-38 2E-42 338.1 32.3 277 120-463 5-299 (814)
79 4gga_A P55CDC, cell division c 100.0 1.3E-37 4.4E-42 314.7 32.8 270 98-402 116-407 (420)
80 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.7E-37 2.6E-41 309.5 38.3 278 111-464 101-389 (445)
81 4h5i_A Guanine nucleotide-exch 100.0 1E-37 3.5E-42 312.9 31.6 281 90-391 16-344 (365)
82 1yfq_A Cell cycle arrest prote 100.0 4.6E-38 1.6E-42 302.4 26.5 273 126-461 8-319 (342)
83 3gre_A Serine/threonine-protei 100.0 6.5E-39 2.2E-43 322.0 20.7 251 186-464 64-357 (437)
84 1sq9_A Antiviral protein SKI8; 100.0 1.7E-37 5.7E-42 305.3 29.5 275 89-392 17-397 (397)
85 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-37 1.3E-41 291.1 29.8 253 126-463 8-334 (351)
86 3i2n_A WD repeat-containing pr 100.0 1.1E-37 3.8E-42 300.0 25.3 274 89-394 19-357 (357)
87 3k26_A Polycomb protein EED; W 100.0 7.9E-38 2.7E-42 301.3 23.5 269 88-390 18-366 (366)
88 3odt_A Protein DOA1; ubiquitin 100.0 5.7E-36 1.9E-40 282.9 35.7 270 90-398 20-304 (313)
89 3dwl_C Actin-related protein 2 100.0 8.4E-39 2.9E-43 313.8 16.6 224 187-463 13-279 (377)
90 3dm0_A Maltose-binding peripla 100.0 1.2E-36 4E-41 327.7 34.2 270 90-389 384-692 (694)
91 3zwl_B Eukaryotic translation 100.0 2.5E-36 8.5E-41 290.4 32.7 277 87-398 31-354 (369)
92 3jrp_A Fusion protein of prote 100.0 1.4E-36 4.8E-41 293.9 29.7 227 186-463 12-284 (379)
93 1k8k_C P40, ARP2/3 complex 41 100.0 9.9E-37 3.4E-41 295.7 28.5 274 89-393 9-364 (372)
94 2j04_A TAU60, YPL007P, hypothe 100.0 2.8E-37 9.7E-42 333.0 26.7 295 89-455 16-350 (588)
95 3ei3_B DNA damage-binding prot 100.0 1.5E-36 5.1E-41 299.7 29.2 268 89-390 74-382 (383)
96 4aez_A CDC20, WD repeat-contai 100.0 5.3E-36 1.8E-40 300.5 33.4 273 94-401 99-391 (401)
97 4ggc_A P55CDC, cell division c 100.0 7.1E-36 2.4E-40 283.6 31.6 259 98-391 36-316 (318)
98 4a11_B DNA excision repair pro 100.0 6.6E-36 2.3E-40 292.1 29.8 307 88-464 43-403 (408)
99 3dw8_B Serine/threonine-protei 100.0 1E-36 3.4E-41 304.3 24.5 239 186-464 29-371 (447)
100 4e54_B DNA damage-binding prot 100.0 3.6E-37 1.2E-41 313.3 20.6 273 90-394 121-434 (435)
101 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-35 5.6E-40 300.1 30.7 267 89-398 134-422 (435)
102 2pm7_B Protein transport prote 100.0 2.4E-35 8.3E-40 285.2 30.3 249 89-389 10-284 (297)
103 1l0q_A Surface layer protein; 100.0 3.6E-34 1.2E-38 282.1 39.2 268 98-402 2-287 (391)
104 3vu4_A KMHSV2; beta-propeller 100.0 9.7E-36 3.3E-40 296.5 28.2 234 165-464 3-269 (355)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.3E-35 7.9E-40 300.7 31.4 275 131-463 6-388 (450)
106 4gq1_A NUP37; propeller, trans 100.0 9.9E-36 3.4E-40 300.4 26.6 222 190-462 94-388 (393)
107 3jrp_A Fusion protein of prote 100.0 2.5E-35 8.7E-40 285.1 27.6 248 118-397 1-294 (379)
108 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-35 6.6E-40 295.4 26.5 272 100-463 49-339 (402)
109 2j04_A TAU60, YPL007P, hypothe 100.0 5E-36 1.7E-40 323.3 23.7 249 128-463 14-294 (588)
110 3bws_A Protein LP49; two-domai 100.0 3.5E-34 1.2E-38 286.1 34.8 303 104-463 95-429 (433)
111 3bg1_A Protein SEC13 homolog; 100.0 2.3E-35 8E-40 288.2 23.0 266 89-402 14-308 (316)
112 3lrv_A PRE-mRNA-splicing facto 100.0 7.8E-36 2.7E-40 293.2 19.6 220 196-463 46-289 (343)
113 1l0q_A Surface layer protein; 100.0 3E-33 1E-37 275.6 36.1 246 161-464 12-273 (391)
114 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-34 5.7E-39 272.9 25.6 264 89-400 12-350 (351)
115 1nir_A Nitrite reductase; hemo 100.0 2.1E-33 7.2E-38 299.2 34.9 311 98-464 149-512 (543)
116 3mmy_A MRNA export factor; mRN 100.0 9.9E-34 3.4E-38 272.2 28.6 257 89-368 40-335 (368)
117 2xyi_A Probable histone-bindin 100.0 6.8E-34 2.3E-38 289.3 25.7 257 117-463 116-407 (430)
118 3lrv_A PRE-mRNA-splicing facto 100.0 6.4E-34 2.2E-38 279.5 21.9 264 96-462 46-329 (343)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.4E-33 1.5E-37 283.9 28.8 244 190-463 9-336 (450)
120 2aq5_A Coronin-1A; WD40 repeat 100.0 5.1E-33 1.8E-37 277.8 25.0 228 189-463 38-296 (402)
121 1yfq_A Cell cycle arrest prote 100.0 2.2E-32 7.6E-37 262.7 26.6 264 90-387 13-321 (342)
122 3jro_A Fusion protein of prote 100.0 4.7E-33 1.6E-37 305.2 22.1 244 126-464 6-283 (753)
123 4gq1_A NUP37; propeller, trans 100.0 1.4E-32 4.7E-37 277.4 23.7 234 127-388 87-387 (393)
124 2w18_A PALB2, fancn, partner a 100.0 2.9E-32 1E-36 278.7 25.0 213 129-388 111-355 (356)
125 3bws_A Protein LP49; two-domai 100.0 4.2E-30 1.4E-34 256.5 32.9 258 98-389 134-431 (433)
126 1nir_A Nitrite reductase; hemo 100.0 1.8E-30 6.2E-35 276.6 25.9 266 136-464 144-456 (543)
127 3jro_A Fusion protein of prote 100.0 3.5E-30 1.2E-34 282.4 21.2 250 90-393 11-288 (753)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 8.8E-29 3E-33 252.8 30.0 276 106-448 87-410 (415)
129 2xyi_A Probable histone-bindin 100.0 3E-29 1E-33 255.0 25.1 248 87-392 127-412 (430)
130 2ecf_A Dipeptidyl peptidase IV 100.0 8.4E-29 2.9E-33 265.9 28.3 303 90-463 38-456 (741)
131 3vgz_A Uncharacterized protein 100.0 1.6E-26 5.6E-31 222.8 37.1 264 131-456 42-334 (353)
132 1pby_B Quinohemoprotein amine 100.0 3.3E-27 1.1E-31 225.1 28.2 273 99-401 2-321 (337)
133 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.6E-27 9E-32 241.9 26.4 274 131-464 64-385 (415)
134 1xfd_A DIP, dipeptidyl aminope 100.0 3.4E-28 1.2E-32 259.9 19.5 272 132-463 19-390 (723)
135 3u4y_A Uncharacterized protein 100.0 6.5E-26 2.2E-30 218.2 33.2 272 98-464 10-302 (331)
136 2ecf_A Dipeptidyl peptidase IV 100.0 1.8E-27 6.3E-32 255.4 24.7 278 129-463 36-410 (741)
137 2z3z_A Dipeptidyl aminopeptida 100.0 3.2E-27 1.1E-31 252.6 25.1 293 98-464 35-433 (706)
138 2ojh_A Uncharacterized protein 100.0 1.2E-26 3.9E-31 215.2 25.0 264 104-457 18-293 (297)
139 3o4h_A Acylamino-acid-releasin 100.0 1E-26 3.5E-31 244.5 25.4 258 128-463 20-312 (582)
140 1xfd_A DIP, dipeptidyl aminope 100.0 4.9E-27 1.7E-31 251.0 22.9 297 98-453 28-427 (723)
141 1ri6_A Putative isomerase YBHE 99.9 2.9E-25 9.8E-30 212.2 31.9 271 99-463 5-305 (343)
142 1k32_A Tricorn protease; prote 99.9 8.7E-26 3E-30 255.2 31.9 310 92-464 18-459 (1045)
143 1pby_B Quinohemoprotein amine 99.9 2.3E-25 8E-30 212.3 27.3 242 161-464 11-308 (337)
144 1k32_A Tricorn protease; prote 99.9 1.1E-25 3.9E-30 254.3 29.1 290 109-463 184-499 (1045)
145 3o4h_A Acylamino-acid-releasin 99.9 4.5E-26 1.6E-30 239.6 19.0 219 188-464 24-274 (582)
146 3vgz_A Uncharacterized protein 99.9 3.6E-24 1.2E-28 206.4 29.9 226 186-464 41-301 (353)
147 3hfq_A Uncharacterized protein 99.9 5.6E-24 1.9E-28 207.4 31.5 277 107-463 15-314 (347)
148 2z3z_A Dipeptidyl aminopeptida 99.9 2.3E-24 8E-29 230.5 25.8 257 133-456 29-376 (706)
149 1z68_A Fibroblast activation p 99.9 8.3E-26 2.9E-30 242.6 14.2 265 133-463 19-388 (719)
150 1jmx_B Amine dehydrogenase; ox 99.9 7.9E-24 2.7E-28 203.2 24.3 222 190-464 4-323 (349)
151 3pe7_A Oligogalacturonate lyas 99.9 1.5E-23 5E-28 206.2 25.9 309 113-463 15-379 (388)
152 1z68_A Fibroblast activation p 99.9 3.5E-25 1.2E-29 237.7 15.6 308 98-463 27-440 (719)
153 1jmx_B Amine dehydrogenase; ox 99.9 2.2E-23 7.5E-28 200.1 25.4 274 98-400 11-335 (349)
154 3u4y_A Uncharacterized protein 99.9 4.3E-23 1.5E-27 198.5 27.3 219 192-464 4-250 (331)
155 2ojh_A Uncharacterized protein 99.9 1.7E-23 5.7E-28 193.9 20.9 210 203-464 17-256 (297)
156 3c5m_A Oligogalacturonate lyas 99.9 1.7E-22 5.7E-27 197.8 24.4 307 112-463 14-379 (396)
157 3scy_A Hypothetical bacterial 99.9 1.6E-21 5.4E-26 191.5 30.7 250 161-463 27-334 (361)
158 1q7f_A NHL, brain tumor CG1071 99.9 6.8E-21 2.3E-25 181.0 31.8 224 184-463 28-277 (286)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 4.1E-22 1.4E-26 198.2 24.3 226 187-463 41-338 (365)
160 3scy_A Hypothetical bacterial 99.9 1E-20 3.5E-25 185.7 30.9 261 106-396 25-345 (361)
161 2oiz_A Aromatic amine dehydrog 99.9 9.1E-21 3.1E-25 190.6 30.5 285 106-449 29-361 (361)
162 4a5s_A Dipeptidyl peptidase 4 99.9 3.4E-22 1.2E-26 217.9 19.9 245 132-399 19-362 (740)
163 1ri6_A Putative isomerase YBHE 99.9 4.2E-21 1.4E-25 183.3 24.8 222 197-463 4-259 (343)
164 3fvz_A Peptidyl-glycine alpha- 99.9 8.1E-21 2.8E-25 186.9 27.2 231 185-463 23-319 (329)
165 4a5s_A Dipeptidyl peptidase 4 99.9 2.1E-22 7.3E-27 219.5 17.1 245 161-463 3-350 (740)
166 2oit_A Nucleoporin 214KDA; NH2 99.9 1.2E-21 4E-26 202.5 20.5 239 108-391 23-279 (434)
167 2oit_A Nucleoporin 214KDA; NH2 99.9 6.8E-22 2.3E-26 204.3 17.9 212 189-464 40-276 (434)
168 3hfq_A Uncharacterized protein 99.9 5.9E-20 2E-24 178.9 28.2 240 98-395 51-324 (347)
169 1jof_A Carboxy-CIS,CIS-muconat 99.9 8.6E-20 2.9E-24 181.4 27.1 257 108-396 14-346 (365)
170 3azo_A Aminopeptidase; POP fam 99.8 2.9E-19 9.8E-24 189.7 25.1 280 89-401 24-380 (662)
171 1q7f_A NHL, brain tumor CG1071 99.8 2.3E-18 7.8E-23 163.5 28.4 231 130-391 30-281 (286)
172 2gop_A Trilobed protease; beta 99.8 5.9E-18 2E-22 164.0 30.5 255 130-463 15-328 (347)
173 3fvz_A Peptidyl-glycine alpha- 99.8 1.6E-18 5.4E-23 170.5 25.8 234 130-388 24-320 (329)
174 3pe7_A Oligogalacturonate lyas 99.8 2.9E-19 9.9E-24 175.5 20.3 232 191-464 41-327 (388)
175 3azo_A Aminopeptidase; POP fam 99.8 1.5E-18 5.3E-23 184.0 26.3 276 127-462 21-363 (662)
176 2oiz_A Aromatic amine dehydrog 99.8 2.8E-18 9.6E-23 172.4 26.0 256 161-464 31-332 (361)
177 2gop_A Trilobed protease; beta 99.8 1.1E-16 3.6E-21 155.2 30.6 247 107-402 42-341 (347)
178 2xdw_A Prolyl endopeptidase; a 99.8 3.5E-17 1.2E-21 177.3 27.3 226 188-464 127-412 (710)
179 3e5z_A Putative gluconolactona 99.8 8.2E-17 2.8E-21 154.2 25.7 218 185-461 27-282 (296)
180 2dg1_A DRP35, lactonase; beta 99.8 2.7E-16 9.2E-21 152.1 28.8 261 98-456 17-300 (333)
181 2bkl_A Prolyl endopeptidase; m 99.8 4.3E-17 1.5E-21 176.4 25.7 243 127-401 118-407 (695)
182 3c5m_A Oligogalacturonate lyas 99.8 9.7E-18 3.3E-22 163.9 17.0 226 188-463 38-326 (396)
183 2xdw_A Prolyl endopeptidase; a 99.8 3.9E-16 1.3E-20 169.1 30.1 250 127-401 122-426 (710)
184 3dsm_A Uncharacterized protein 99.8 5.9E-16 2E-20 152.8 28.1 248 161-463 17-299 (328)
185 2bkl_A Prolyl endopeptidase; m 99.7 3.6E-17 1.2E-21 177.1 20.5 224 188-464 123-395 (695)
186 3no2_A Uncharacterized protein 99.7 9.4E-16 3.2E-20 149.3 27.2 210 197-454 4-231 (276)
187 3e5z_A Putative gluconolactona 99.7 2.8E-15 9.4E-20 143.5 28.7 224 119-368 18-276 (296)
188 2z2n_A Virginiamycin B lyase; 99.7 7.5E-14 2.6E-18 131.0 37.3 260 128-461 13-291 (299)
189 1qks_A Cytochrome CD1 nitrite 99.7 3E-14 1E-18 153.4 37.2 312 98-463 167-535 (567)
190 3dsm_A Uncharacterized protein 99.7 1.2E-14 4.1E-19 143.4 29.9 262 104-399 13-310 (328)
191 1rwi_B Serine/threonine-protei 99.7 3.2E-15 1.1E-19 139.7 23.8 223 187-463 25-261 (270)
192 1yr2_A Prolyl oligopeptidase; 99.7 1.1E-15 3.8E-20 166.7 23.0 223 188-464 165-439 (741)
193 2dg1_A DRP35, lactonase; beta 99.7 2.3E-15 7.7E-20 145.6 22.0 225 190-463 10-260 (333)
194 1yr2_A Prolyl oligopeptidase; 99.7 8.3E-15 2.8E-19 159.9 28.3 243 128-399 161-449 (741)
195 3hrp_A Uncharacterized protein 99.7 1.9E-14 6.5E-19 147.8 28.4 245 184-463 129-407 (409)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 6.8E-14 2.3E-18 133.2 26.8 223 185-463 17-296 (314)
197 3g4e_A Regucalcin; six bladed 99.6 2.1E-13 7.2E-18 132.0 27.7 217 186-455 13-261 (297)
198 1rwi_B Serine/threonine-protei 99.6 2.4E-13 8.1E-18 126.9 26.4 228 131-392 25-266 (270)
199 1qks_A Cytochrome CD1 nitrite 99.6 5.1E-13 1.7E-17 143.8 31.7 251 161-463 177-474 (567)
200 2z2n_A Virginiamycin B lyase; 99.6 6.1E-12 2.1E-16 118.0 34.8 264 89-392 15-297 (299)
201 3no2_A Uncharacterized protein 99.6 1E-13 3.5E-18 134.9 22.7 174 234-463 9-192 (276)
202 2qe8_A Uncharacterized protein 99.6 5.1E-14 1.8E-18 139.5 20.5 255 130-459 17-314 (343)
203 2qc5_A Streptogramin B lactona 99.6 1.8E-11 6.1E-16 114.8 35.0 255 128-454 18-290 (300)
204 2mad_H Methylamine dehydrogena 99.5 1.1E-11 3.8E-16 125.9 32.3 264 109-397 48-357 (373)
205 2mad_H Methylamine dehydrogena 99.5 2.5E-11 8.4E-16 123.4 33.5 274 136-464 27-348 (373)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 7.7E-12 2.6E-16 119.0 26.8 245 98-390 29-299 (314)
207 3sjl_D Methylamine dehydrogena 99.5 4.9E-12 1.7E-16 130.7 26.9 272 107-400 58-373 (386)
208 2qc5_A Streptogramin B lactona 99.5 6.7E-11 2.3E-15 110.9 32.1 220 186-463 20-257 (300)
209 2ghs_A AGR_C_1268P; regucalcin 99.5 2E-11 6.7E-16 120.3 29.2 213 188-455 51-291 (326)
210 3iuj_A Prolyl endopeptidase; h 99.5 1.2E-12 4E-17 142.4 20.3 221 189-463 132-402 (693)
211 3iuj_A Prolyl endopeptidase; h 99.5 4.5E-12 1.5E-16 137.8 24.6 244 127-400 126-414 (693)
212 2qe8_A Uncharacterized protein 99.5 1.3E-12 4.4E-17 129.4 17.1 211 186-463 17-275 (343)
213 3hrp_A Uncharacterized protein 99.4 2.7E-11 9.3E-16 124.3 25.6 221 131-388 132-408 (409)
214 1yiq_A Quinohemoprotein alcoho 99.4 2.5E-11 8.5E-16 133.0 26.9 270 97-401 69-516 (689)
215 3sjl_D Methylamine dehydrogena 99.4 8.8E-12 3E-16 128.8 20.8 282 130-464 33-361 (386)
216 3g4e_A Regucalcin; six bladed 99.4 3E-10 1E-14 109.7 29.9 218 126-368 9-261 (297)
217 1kb0_A Quinohemoprotein alcoho 99.4 6.7E-11 2.3E-15 129.3 28.3 274 97-401 76-518 (677)
218 3dr2_A Exported gluconolactona 99.4 7.4E-11 2.5E-15 114.2 25.2 216 185-461 44-302 (305)
219 3c75_H MADH, methylamine dehyd 99.4 7E-11 2.4E-15 123.4 25.3 267 108-397 99-409 (426)
220 2hz6_A Endoplasmic reticulum t 99.4 1.5E-13 5E-18 138.8 4.0 179 197-399 8-201 (369)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2.2E-09 7.6E-14 106.1 33.8 289 97-463 52-375 (376)
222 2ghs_A AGR_C_1268P; regucalcin 99.3 1.5E-09 5.2E-14 106.7 30.2 214 130-368 49-291 (326)
223 1xip_A Nucleoporin NUP159; bet 99.3 3.3E-11 1.1E-15 124.5 19.0 178 188-452 40-230 (388)
224 1mda_H Methylamine dehydrogena 99.3 5.7E-11 1.9E-15 121.6 20.0 265 109-401 47-357 (368)
225 3hxj_A Pyrrolo-quinoline quino 99.3 2.1E-10 7.2E-15 109.7 22.8 283 97-462 29-320 (330)
226 3dr2_A Exported gluconolactona 99.3 6.9E-10 2.3E-14 107.4 25.2 223 118-368 34-296 (305)
227 3c75_H MADH, methylamine dehyd 99.3 3E-10 1E-14 118.6 23.4 273 139-464 82-400 (426)
228 1yiq_A Quinohemoprotein alcoho 99.2 2.1E-09 7.1E-14 117.8 27.6 228 191-463 117-502 (689)
229 1kb0_A Quinohemoprotein alcoho 99.2 3.5E-09 1.2E-13 115.8 27.6 236 190-464 123-505 (677)
230 2hz6_A Endoplasmic reticulum t 99.2 2.8E-12 9.4E-17 129.5 0.6 139 237-399 16-158 (369)
231 1xip_A Nucleoporin NUP159; bet 99.2 1E-09 3.5E-14 113.3 19.6 178 131-370 39-235 (388)
232 1kv9_A Type II quinohemoprotei 99.0 4.9E-08 1.7E-12 106.5 25.9 267 97-401 65-499 (668)
233 3hxj_A Pyrrolo-quinoline quino 99.0 4.5E-09 1.5E-13 100.5 13.2 224 133-401 23-254 (330)
234 2ad6_A Methanol dehydrogenase 99.0 2E-07 6.8E-12 100.0 27.1 269 97-401 61-505 (571)
235 3q7m_A Lipoprotein YFGL, BAMB; 98.9 5.6E-07 1.9E-11 88.8 25.7 248 96-387 101-375 (376)
236 1mda_H Methylamine dehydrogena 98.9 9.9E-09 3.4E-13 105.0 13.3 247 162-464 47-344 (368)
237 1fwx_A Nitrous oxide reductase 98.9 3.2E-08 1.1E-12 107.3 16.9 253 97-368 100-407 (595)
238 2iwa_A Glutamine cyclotransfer 98.9 7.3E-07 2.5E-11 87.6 25.1 188 188-390 23-237 (266)
239 1npe_A Nidogen, entactin; glyc 98.9 3.4E-06 1.2E-10 79.6 28.9 195 186-400 36-248 (267)
240 1w6s_A Methanol dehydrogenase 98.8 8.6E-07 2.9E-11 96.1 27.1 271 97-401 61-514 (599)
241 2iwa_A Glutamine cyclotransfer 98.8 9.9E-07 3.4E-11 86.7 23.5 194 229-460 23-231 (266)
242 1kv9_A Type II quinohemoprotei 98.8 7.4E-07 2.5E-11 97.2 24.7 235 190-463 112-485 (668)
243 4a2l_A BT_4663, two-component 98.8 2E-05 6.8E-10 86.4 35.7 316 89-463 88-433 (795)
244 1flg_A Protein (quinoprotein e 98.8 2.4E-06 8.1E-11 92.0 27.6 145 240-401 291-527 (582)
245 4a2l_A BT_4663, two-component 98.8 5.1E-05 1.7E-09 83.2 38.2 307 91-459 175-520 (795)
246 2p4o_A Hypothetical protein; p 98.7 1.1E-05 3.8E-10 78.2 28.8 215 186-456 32-278 (306)
247 1npe_A Nidogen, entactin; glyc 98.7 1.1E-05 3.7E-10 76.1 27.3 182 199-397 2-205 (267)
248 1fwx_A Nitrous oxide reductase 98.7 4.1E-07 1.4E-11 98.6 18.1 186 196-401 99-382 (595)
249 2ece_A 462AA long hypothetical 98.7 6.1E-06 2.1E-10 87.0 25.5 192 196-398 93-363 (462)
250 3nol_A Glutamine cyclotransfer 98.7 4.8E-06 1.6E-10 81.9 22.9 172 190-368 47-244 (262)
251 2fp8_A Strictosidine synthase; 98.6 1.2E-05 4.1E-10 78.1 24.8 235 186-463 19-310 (322)
252 1k3i_A Galactose oxidase precu 98.6 1.2E-05 4E-10 86.8 27.0 244 109-368 220-530 (656)
253 3nol_A Glutamine cyclotransfer 98.6 5E-06 1.7E-10 81.7 21.6 198 218-454 31-243 (262)
254 3mbr_X Glutamine cyclotransfer 98.6 2.1E-05 7.2E-10 76.4 25.5 199 218-454 9-222 (243)
255 3nok_A Glutaminyl cyclase; bet 98.5 9.7E-06 3.3E-10 79.9 21.0 172 190-368 59-254 (268)
256 3nok_A Glutaminyl cyclase; bet 98.5 1.2E-05 4.1E-10 79.3 21.4 153 228-400 56-220 (268)
257 3mbr_X Glutamine cyclotransfer 98.5 3.3E-05 1.1E-09 75.1 23.3 172 190-368 25-223 (243)
258 3v9f_A Two-component system se 98.5 0.00048 1.6E-08 75.3 35.2 269 89-393 258-571 (781)
259 3tc9_A Hypothetical hydrolase; 98.5 6E-05 2.1E-09 77.8 26.3 246 185-463 136-427 (430)
260 2ad6_A Methanol dehydrogenase 98.5 2.6E-05 8.8E-10 83.6 24.1 235 190-463 110-491 (571)
261 1flg_A Protein (quinoprotein e 98.4 0.00018 6.2E-09 77.3 30.2 148 190-341 112-364 (582)
262 3v9f_A Two-component system se 98.4 0.00065 2.2E-08 74.2 34.5 312 90-463 212-565 (781)
263 2fp8_A Strictosidine synthase; 98.4 0.00014 4.8E-09 70.5 25.8 186 186-389 80-312 (322)
264 2p4o_A Hypothetical protein; p 98.4 0.0002 6.7E-09 69.3 26.5 223 117-367 21-276 (306)
265 1w6s_A Methanol dehydrogenase 98.3 0.00021 7.3E-09 77.4 28.1 150 190-340 110-350 (599)
266 4hw6_A Hypothetical protein, I 98.3 0.00047 1.6E-08 71.3 29.2 244 184-463 137-430 (433)
267 2xe4_A Oligopeptidase B; hydro 98.3 9.3E-05 3.2E-09 81.4 24.9 193 131-368 175-387 (751)
268 1k3i_A Galactose oxidase precu 98.3 0.00013 4.3E-09 78.8 24.3 253 134-395 190-502 (656)
269 3v65_B Low-density lipoprotein 98.2 0.0011 3.8E-08 67.0 27.3 167 207-389 95-276 (386)
270 3v64_C Agrin; beta propeller, 98.2 0.00071 2.4E-08 67.6 25.4 203 185-405 72-290 (349)
271 1ijq_A LDL receptor, low-densi 98.2 0.0027 9.2E-08 62.1 29.1 173 208-397 10-201 (316)
272 2ece_A 462AA long hypothetical 98.2 0.00016 5.5E-09 76.2 21.2 154 273-462 95-285 (462)
273 3v64_C Agrin; beta propeller, 98.1 0.0026 8.9E-08 63.4 29.0 173 207-396 52-239 (349)
274 3v65_B Low-density lipoprotein 98.1 0.00053 1.8E-08 69.4 24.2 203 185-405 115-333 (386)
275 3tc9_A Hypothetical hydrolase; 98.1 0.0023 8E-08 65.8 28.4 247 99-388 150-428 (430)
276 3kya_A Putative phosphatase; s 98.1 0.00078 2.7E-08 71.7 25.3 250 184-463 137-472 (496)
277 1ijq_A LDL receptor, low-densi 98.1 0.0087 3E-07 58.5 30.6 197 185-400 29-248 (316)
278 4hw6_A Hypothetical protein, I 98.0 0.0022 7.5E-08 66.3 26.7 230 98-388 153-431 (433)
279 2xe4_A Oligopeptidase B; hydro 98.0 4.4E-05 1.5E-09 84.1 13.7 111 264-391 177-305 (751)
280 3kya_A Putative phosphatase; s 98.0 0.0035 1.2E-07 66.6 27.2 262 98-397 152-482 (496)
281 3sov_A LRP-6, low-density lipo 97.9 0.011 3.6E-07 58.5 27.7 224 161-405 13-253 (318)
282 3p5b_L Low density lipoprotein 97.9 0.018 6.2E-07 58.5 30.1 200 185-401 111-331 (400)
283 2xbg_A YCF48-like protein; pho 97.9 0.0082 2.8E-07 58.9 26.2 212 189-459 39-272 (327)
284 2xbg_A YCF48-like protein; pho 97.8 0.027 9.4E-07 55.2 29.7 150 263-463 165-319 (327)
285 3p5b_L Low density lipoprotein 97.8 0.028 9.5E-07 57.1 30.4 204 129-344 111-332 (400)
286 2ism_A Putative oxidoreductase 97.7 0.009 3.1E-07 59.6 23.6 130 185-322 30-221 (352)
287 3amr_A 3-phytase; beta-propell 97.6 0.015 5.1E-07 59.4 23.9 181 200-398 43-272 (355)
288 3sov_A LRP-6, low-density lipo 97.6 0.078 2.7E-06 52.2 28.3 196 131-342 36-248 (318)
289 3m0c_C LDL receptor, low-densi 97.5 0.098 3.3E-06 58.4 31.1 218 130-405 424-647 (791)
290 3a9g_A Putative uncharacterize 97.5 0.071 2.4E-06 53.3 26.8 131 185-322 28-216 (354)
291 4a0p_A LRP6, LRP-6, low-densit 97.4 0.099 3.4E-06 56.7 28.5 174 200-390 8-197 (628)
292 1n7d_A LDL receptor, low-densi 97.3 0.0023 7.8E-08 70.3 14.8 204 185-406 405-630 (699)
293 3m0c_C LDL receptor, low-densi 97.3 0.17 5.9E-06 56.5 29.7 175 206-397 402-595 (791)
294 4a0p_A LRP6, LRP-6, low-densit 97.3 0.11 3.8E-06 56.3 27.4 196 186-401 37-248 (628)
295 1n7d_A LDL receptor, low-densi 97.3 0.00091 3.1E-08 73.4 10.8 176 206-397 384-577 (699)
296 3s94_A LRP-6, low-density lipo 97.3 0.31 1.1E-05 52.6 33.8 269 98-397 96-429 (619)
297 3amr_A 3-phytase; beta-propell 97.2 0.028 9.7E-07 57.3 20.7 173 238-463 48-260 (355)
298 3s94_A LRP-6, low-density lipo 97.1 0.12 4E-06 55.9 25.3 198 185-400 39-253 (619)
299 3a9g_A Putative uncharacterize 97.0 0.054 1.9E-06 54.2 19.5 100 261-367 29-153 (354)
300 3qqz_A Putative uncharacterize 96.9 0.32 1.1E-05 47.1 25.3 182 238-461 47-248 (255)
301 3qqz_A Putative uncharacterize 96.9 0.13 4.4E-06 49.9 20.6 107 260-368 26-140 (255)
302 2ism_A Putative oxidoreductase 96.8 0.05 1.7E-06 54.2 17.5 100 261-367 31-153 (352)
303 3das_A Putative oxidoreductase 96.8 0.55 1.9E-05 47.4 26.0 135 184-322 30-220 (347)
304 3sre_A PON1, serum paraoxonase 96.8 0.25 8.5E-06 50.1 22.6 93 281-389 137-251 (355)
305 2p9w_A MAL S 1 allergenic prot 96.6 0.33 1.1E-05 49.1 22.0 163 186-389 13-214 (334)
306 2p9w_A MAL S 1 allergenic prot 96.2 0.39 1.3E-05 48.6 19.8 158 264-463 16-212 (334)
307 2g8s_A Glucose/sorbosone dehyd 96.1 1.2 4.1E-05 44.2 26.2 132 185-322 17-216 (353)
308 3das_A Putative oxidoreductase 96.1 0.12 4.1E-06 52.3 15.4 73 295-368 23-103 (347)
309 3sre_A PON1, serum paraoxonase 96.0 0.47 1.6E-05 48.0 19.3 83 281-367 81-183 (355)
310 2g8s_A Glucose/sorbosone dehyd 95.4 0.39 1.3E-05 47.7 16.1 101 261-367 18-148 (353)
311 1cru_A Protein (soluble quinop 95.4 1.7 5.9E-05 44.9 21.5 102 261-368 27-163 (454)
312 3pbp_A Nucleoporin NUP82; beta 95.2 1.6 5.4E-05 45.8 20.1 155 268-460 27-206 (452)
313 1cru_A Protein (soluble quinop 95.2 0.48 1.6E-05 49.2 16.3 73 296-368 19-100 (454)
314 2wg3_C Hedgehog-interacting pr 95.1 0.41 1.4E-05 50.1 15.5 74 295-368 5-92 (463)
315 4gq2_M Nucleoporin NUP120; bet 93.5 1.8 6.1E-05 49.2 17.4 37 351-398 238-274 (950)
316 2xzh_A Clathrin heavy chain 1; 93.5 7.5 0.00026 39.6 29.4 193 190-401 71-301 (365)
317 2be1_A Serine/threonine-protei 92.8 1.7 5.7E-05 43.8 14.2 100 202-301 14-139 (339)
318 1bpo_A Protein (clathrin); cla 92.6 12 0.0004 39.6 28.8 195 190-401 70-300 (494)
319 1tl2_A L10, protein (tachylect 91.9 1.3 4.3E-05 42.8 11.3 107 303-459 40-156 (236)
320 3s25_A Hypothetical 7-bladed b 90.9 10 0.00035 36.9 17.1 110 239-367 87-202 (302)
321 1tl2_A L10, protein (tachylect 90.8 6.3 0.00022 37.9 14.9 98 261-366 41-152 (236)
322 2wg3_C Hedgehog-interacting pr 89.5 6.5 0.00022 40.9 15.2 105 261-368 14-158 (463)
323 3pbp_A Nucleoporin NUP82; beta 85.6 23 0.0008 37.0 16.3 125 309-464 26-156 (452)
324 1xi4_A Clathrin heavy chain; a 85.0 16 0.00054 43.8 16.1 189 195-397 74-296 (1630)
325 4fhn_B Nucleoporin NUP120; pro 83.3 0.82 2.8E-05 52.7 4.6 37 351-398 240-276 (1139)
326 3ei3_A DNA damage-binding prot 82.6 78 0.0027 36.7 29.5 97 283-395 492-596 (1158)
327 2vpj_A Kelch-like protein 12; 82.0 32 0.0011 31.8 16.6 100 283-394 128-235 (301)
328 3sbq_A Nitrous-oxide reductase 81.8 6.3 0.00022 42.8 10.4 101 284-401 299-429 (638)
329 4gq2_M Nucleoporin NUP120; bet 78.7 7.6 0.00026 44.0 10.4 37 304-340 236-274 (950)
330 3ei3_A DNA damage-binding prot 78.5 1E+02 0.0036 35.6 36.9 169 241-462 808-995 (1158)
331 4fhn_B Nucleoporin NUP120; pro 77.4 11 0.00037 43.4 11.3 35 190-225 242-276 (1139)
332 3pg0_A Threefoil; symmetric de 77.3 30 0.001 29.8 11.9 107 280-399 24-139 (165)
333 2be1_A Serine/threonine-protei 75.7 6.2 0.00021 39.6 7.7 112 274-400 11-140 (339)
334 2xzh_A Clathrin heavy chain 1; 75.7 73 0.0025 32.4 18.5 120 274-402 78-200 (365)
335 3f7f_A Nucleoporin NUP120; nuc 75.4 2.5 8.6E-05 46.9 5.1 32 357-399 228-259 (729)
336 3sbq_A Nitrous-oxide reductase 75.1 28 0.00095 37.9 12.8 120 241-369 299-455 (638)
337 3b7f_A Glycosyl hydrolase, BNR 70.9 80 0.0028 30.7 16.8 23 437-459 233-256 (394)
338 3zwu_A Alkaline phosphatase PH 70.0 13 0.00046 40.1 9.1 69 352-453 479-548 (592)
339 4a9v_A PHOX; hydrolase, beta-p 68.0 17 0.00059 39.3 9.3 71 351-454 478-549 (592)
340 1bpo_A Protein (clathrin); cla 67.8 1.3E+02 0.0044 31.8 17.7 120 274-402 77-199 (494)
341 2xn4_A Kelch-like protein 2; s 62.9 95 0.0032 28.6 17.5 111 274-394 109-233 (302)
342 3ii7_A Kelch-like protein 7; p 60.3 1.1E+02 0.0036 28.3 16.7 110 274-393 102-228 (306)
343 3b7f_A Glycosyl hydrolase, BNR 59.1 1.3E+02 0.0046 29.1 16.9 52 273-324 22-77 (394)
344 3vsf_A Ricin B lectin; GH43 CB 58.9 70 0.0024 33.4 11.9 107 280-399 358-473 (526)
345 3zwu_A Alkaline phosphatase PH 57.4 39 0.0013 36.4 9.8 62 303-368 475-550 (592)
346 3s25_A Hypothetical 7-bladed b 56.9 1.4E+02 0.0048 28.7 24.9 187 134-340 57-262 (302)
347 1sr4_A CDT A, cytolethal diste 56.6 23 0.00078 33.4 6.8 85 210-300 71-167 (206)
348 2xn4_A Kelch-like protein 2; s 56.4 1.2E+02 0.0042 27.8 19.5 182 197-393 61-279 (302)
349 4a9v_A PHOX; hydrolase, beta-p 53.1 52 0.0018 35.6 9.8 62 303-368 475-550 (592)
350 3f7f_A Nucleoporin NUP120; nuc 51.7 15 0.00051 40.8 5.4 30 196-225 229-258 (729)
351 3q6k_A 43.2 kDa salivary prote 48.8 2.3E+02 0.0078 28.7 17.8 20 281-300 179-198 (381)
352 1sqj_A OXG-RCBH, oligoxylogluc 46.1 3.3E+02 0.011 29.7 17.5 78 261-339 15-107 (789)
353 1zgk_A Kelch-like ECH-associat 44.2 2E+02 0.0067 26.6 15.5 100 283-394 137-244 (308)
354 1sr4_A CDT A, cytolethal diste 44.0 64 0.0022 30.3 7.7 85 161-257 69-167 (206)
355 2vpj_A Kelch-like protein 12; 44.0 1.9E+02 0.0065 26.4 26.5 110 274-393 160-281 (301)
356 3ott_A Two-component system se 39.4 3.7E+02 0.013 28.5 35.1 250 88-366 21-296 (758)
357 4hvt_A Ritya.17583.B, post-pro 38.6 4.2E+02 0.014 28.8 21.0 181 191-392 135-383 (711)
358 3ef2_A Agglutinin, lectin; bet 38.5 2.9E+02 0.0099 26.9 14.2 105 282-400 5-128 (293)
359 3ii7_A Kelch-like protein 7; p 36.6 2.5E+02 0.0086 25.7 21.4 185 197-394 55-276 (306)
360 4asc_A Kelch repeat and BTB do 35.9 2.7E+02 0.0091 25.7 15.1 102 283-394 117-225 (315)
361 3nbc_A Ricin B-like lectin; la 35.3 2.2E+02 0.0077 24.7 13.0 58 324-396 60-117 (148)
362 3vsf_A Ricin B lectin; GH43 CB 35.0 4E+02 0.014 27.5 16.0 60 279-338 404-470 (526)
363 3elq_A Arylsulfate sulfotransf 32.6 4.9E+02 0.017 27.8 14.5 39 351-402 357-396 (571)
364 1xi4_A Clathrin heavy chain; a 31.8 1E+02 0.0035 37.2 8.4 131 207-345 47-200 (1630)
365 3mez_B Mannose-specific lectin 28.8 1.8E+02 0.0062 23.7 7.4 79 274-365 25-104 (113)
366 3a0c_A Mannose/sialic acid-bin 28.4 2.3E+02 0.008 22.8 10.3 70 280-364 27-97 (110)
367 1zgk_A Kelch-like ECH-associat 26.6 3.8E+02 0.013 24.6 16.2 109 274-394 169-291 (308)
368 4asc_A Kelch repeat and BTB do 25.5 4E+02 0.014 24.5 14.6 110 283-396 165-283 (315)
369 3a07_A Actinohivin; carbohydra 24.2 86 0.0029 25.4 4.6 15 380-396 82-96 (118)
370 4h3o_A Lectin; cadmium, plant 23.3 2.7E+02 0.0093 22.4 7.5 77 274-365 20-98 (105)
371 3ott_A Two-component system se 22.5 7E+02 0.024 26.3 32.2 224 129-393 21-263 (758)
372 3pg0_A Threefoil; symmetric de 22.3 3.5E+02 0.012 22.8 12.8 69 205-301 24-92 (165)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-50 Score=396.49 Aligned_cols=281 Identities=15% Similarity=0.184 Sum_probs=246.1
Q ss_pred ccEeeEeecCCCceEEEEEEeeC----CCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEE
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKN----NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVE 192 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~----g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~Va 192 (464)
|..+..+ .+|.+.|++|+|+|+ ++.|++ ++.| ++++||++..+++.. .++. ++...+.+|+
T Consensus 22 g~~~~~~-~~H~~~V~~v~~~~~~~~~~~~l~t----gs~D------~~v~vW~~~~~~~~~---~~~l~gh~~~v~~~~ 87 (321)
T 3ow8_A 22 GILFKQE-QAHDDAIWSVAWGTNKKENSETVVT----GSLD------DLVKVWKWRDERLDL---QWSLEGHQLGVVSVD 87 (321)
T ss_dssp EEEEEET-TSSSSCEEEEEEC-------CEEEE----EETT------SCEEEEEEETTEEEE---EEEECCCSSCEEEEE
T ss_pred hheeeec-ccCCCcEEEEEEecCCCCCCCEEEE----EcCC------CCEEEEECCCCCeee---eeeeccCCCCEEEEE
Confidence 3344455 569999999999985 668988 4566 799999998776421 1111 1223344899
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
|+ |++.+|++|+.|++|||||+.+++++.++. ...|+.++|+|+ .|++|++||+++|+...++..+...
T Consensus 88 ~~-~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 88 IS-HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp EC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred EC-CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 97 899999999999999999999999998886 457899999984 6789999999999999999977678
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
+.+++|+| ++..|++++.|++|+|||++++++++++.+|...|.+++|+|||++|++++ |++|+|||+ +++++.+|.
T Consensus 167 v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (321)
T 3ow8_A 167 ILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 245 (321)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc
Confidence 89999999 467777789999999999999999999999999999999999999999999 999999999 699999999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
+|..+ |.+++|+|||++|+|++. |++|+|||+.+++|++++.+|+.
T Consensus 246 ~h~~~-----v~~~~~sp~~~~l~s~s~-----------D~~v~iwd~~~~~~~~~~~~h~~------------------ 291 (321)
T 3ow8_A 246 GHASW-----VLNVAFCPDDTHFVSSSS-----------DKSVKVWDVGTRTCVHTFFDHQD------------------ 291 (321)
T ss_dssp CCSSC-----EEEEEECTTSSEEEEEET-----------TSCEEEEETTTTEEEEEECCCSS------------------
T ss_pred CCCCc-----eEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCEEEEEEcCCCC------------------
Confidence 99998 899999999999999987 99999999999999999999987
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|+|||+.|+||+.||+|+|||.
T Consensus 292 ----------------~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 292 ----------------QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----------------CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ----------------cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 8999999999999999999999999984
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-50 Score=411.89 Aligned_cols=279 Identities=16% Similarity=0.271 Sum_probs=253.2
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
.....+ .+|...|.++.|+|++..|+++ +.| ++++|||+.+|++...+..|+ ..+..|+|+ |+|
T Consensus 99 ~~~~~l-~gh~~~V~~~~~~p~~~~l~s~----s~D------g~i~vwd~~~~~~~~~l~~h~----~~V~~v~~~-~~~ 162 (410)
T 1vyh_C 99 PEKYAL-SGHRSPVTRVIFHPVFSVMVSA----SED------ATIKVWDYETGDFERTLKGHT----DSVQDISFD-HSG 162 (410)
T ss_dssp SCSCEE-ECCSSCEEEEEECSSSSEEEEE----ESS------SCEEEEETTTCCCCEEECCCS----SCEEEEEEC-TTS
T ss_pred CceEee-cccCCcEEEEEEcCCCCEEEEE----eCC------CeEEEEECCCCcEEEEEeccC----CcEEEEEEc-CCC
Confidence 334566 4588999999999999999994 456 799999999999876665554 344589997 899
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
++|++|+.|++|||||+.+++++.++. ...|.+|+|+|+ .|++|++||+++|++++++.+|...+..++|
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 999999999999999999999999886 567999999884 7899999999999999999987788999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC--------------------CcEEEEEe-CCeEE
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE--------------------NQLFLTFR-NRTVA 327 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd--------------------gqllaS~s-D~TIk 327 (464)
+| ++..+++++.|++|+|||+.+++++..+.+|...|.+++|+|+ |++|+|++ |++|+
T Consensus 243 ~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 243 NQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 88 4667777899999999999999999999999999999999997 77999999 99999
Q ss_pred EEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 328 VWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 328 lWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
|||+ +|+++.+|.+|..+ |++++|+|+|++|+||+. |++|+|||+.+++|++++.+|..
T Consensus 322 iwd~~~~~~~~~~~~h~~~-----v~~v~~~~~g~~l~s~s~-----------D~~i~vwd~~~~~~~~~~~~h~~---- 381 (410)
T 1vyh_C 322 MWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCAD-----------DKTLRVWDYKNKRCMKTLNAHEH---- 381 (410)
T ss_dssp EEETTTTEEEEEEECCSSC-----EEEEEECSSSSCEEEEET-----------TTEEEEECCTTSCCCEEEECCSS----
T ss_pred EEECCCCceEEEEECCCCc-----EEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceEEEEcCCCC----
Confidence 9999 69999999999998 899999999999999987 99999999999999999999987
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|+|+++.|||||.||+|+||+.
T Consensus 382 ------------------------------~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 382 ------------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ------------------------------CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ------------------------------cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 8999999999999999999999999984
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.1e-50 Score=426.92 Aligned_cols=348 Identities=9% Similarity=0.105 Sum_probs=284.9
Q ss_pred ceEEEEec--cceeehhccCCeEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
.|..+.++ |++||+++.+|++++||+.+++ .+..+ ..|...|++|+|+|+|+.|++++ ...+ .-.++++
T Consensus 61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~dg~~l~~~~--~~~~----~~~~v~~ 133 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSESKRIAAVG--EGRE----RFGHVFL 133 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTTSCEEEEEE--CCSS----CSEEEEE
T ss_pred ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCCCCEEEEEE--CCCC----ceeEEEE
Confidence 45555555 9999999999999999987654 34566 45888899999999999999966 2222 0136667
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS----- 237 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s----- 237 (464)
|+ +|+....+..|. +.+.+|+|+ |+|+ .|++|+.|++|||||+.+++++.++. ...|.+|+|+|+
T Consensus 134 wd--~~~~~~~l~gh~----~~v~~v~f~-p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 134 FD--TGTSNGNLTGQA----RAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp TT--TCCBCBCCCCCS----SCEEEEEEC-SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ee--CCCCcceecCCC----CCceEEEEC-CCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence 76 677665555444 445599997 8987 69999999999999999999999887 467999999984
Q ss_pred ---CceeEEEEEcCCCcEEEEEe-------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE---------
Q 012410 238 ---SHVPLKILSIEDGTVLKVFY-------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--------- 298 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~l~tl~-------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~--------- 298 (464)
.|++|+|||+++|+++.++. +|...+.+|+|+| ++..|++++.|++|+|||+.+++++.+
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence 78999999999999999994 5667899999999 467788899999999999999887643
Q ss_pred ----------------------------------cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe-cc
Q 012410 299 ----------------------------------SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF-ED 341 (464)
Q Consensus 299 ----------------------------------l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl-~g 341 (464)
+.+|...|.+++|+|||++|+|++ |++|++||+ +|++...+ .+
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~ 365 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 365 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCS
T ss_pred eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccC
Confidence 458999999999999999999999 999999999 68877665 33
Q ss_pred CCCCcC--------------------------------------------------------------------------
Q 012410 342 HLLWHP-------------------------------------------------------------------------- 347 (464)
Q Consensus 342 H~~~~~-------------------------------------------------------------------------- 347 (464)
|...+.
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 432110
Q ss_pred --CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 348 --DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 348 --~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
...+++++|||||++||+|+. |++|+|||+.++++ +++ .+|...+....++++|..+++...+.
T Consensus 446 ~~~~~v~~va~spdg~~lasgs~-----------D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~ 513 (611)
T 1nr0_A 446 PISYNSSCVALSNDKQFVAVGGQ-----------DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR 513 (611)
T ss_dssp ECSSCEEEEEECTTSCEEEEEET-----------TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred ecCCCceEEEEeCCCCEEEEeCC-----------CCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence 012578999999999999987 99999999988764 455 78988777779999999999999999
Q ss_pred ccccccccc-----------ccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 424 SSYIRSTVG-----------EALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 424 ~~~~~~~~~-----------~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+.++|.... .+-..|++|+|||||+.|||||.|++|+|||.
T Consensus 514 ~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 988887542 13458999999999999999999999999984
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-49 Score=411.00 Aligned_cols=336 Identities=13% Similarity=0.225 Sum_probs=293.2
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|..+.+. |+.|++++.+|.+++|+ .+++.+..+ .+|...|.+++|+|+|+.|++++ .+ +++++|
T Consensus 222 ~~v~~~~~s~dg~~l~~~~~d~~i~~w~-~~~~~~~~~-~~~~~~v~~v~~~~d~~~l~~~~----~d------~~i~~w 289 (577)
T 2ymu_A 222 SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVNGVAFRPDGQTIASAS----DD------KTVKLW 289 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC-TTSCEEEEE-CCCSSCEEEEEECTTSSEEEEEE----TT------SCEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEe-CCCCEEEEE-ecCCCCEEEEEEcCCCCEEEEEe----CC------CEEEEE
Confidence 456666665 88999999999999999 789999998 45888899999999999999844 55 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
+ ..|++...+..+. ..+..++|+ |||+.|++++.|++|++||+.+ ..+.++. ...|.+++|+|+
T Consensus 290 ~-~~~~~~~~~~~h~----~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 290 N-RNGQLLQTLTGHS----SSVWGVAFS-PDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASA 362 (577)
T ss_dssp E-TTSCEEEEECCCS----SCEEEEEEC-TTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred e-CCCcEEEEEecCC----CCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 9 4566543333332 334589997 8999999999999999999765 4555555 578999999984
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
.|++|++||. +|+++.++..|...+.+|+|+| ++..|++++.|++|+||| .++++++++.+|...|.+++|+||++
T Consensus 363 ~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~ 439 (577)
T 2ymu_A 363 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQ 439 (577)
T ss_dssp ETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEEC-TTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred eCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEe-CCCCEEEEecCCCCCeEEEEECCCCC
Confidence 6789999995 6999999997778899999998 467788899999999999 68999999999999999999999999
Q ss_pred EEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 317 LFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 317 llaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+||+++ |++|++||.+|+++.++.+|... |.+++|+|||++||+++. |++|+||| .+|+|++
T Consensus 440 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-----v~~~~~spd~~~las~~~-----------d~~i~iw~-~~~~~~~ 502 (577)
T 2ymu_A 440 TIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDGQTIASASD-----------DKTVKLWN-RNGQLLQ 502 (577)
T ss_dssp EEEEEETTSEEEEEETTSCEEEEEECCSSC-----EEEEEECTTSCEEEEEET-----------TSEEEEEE-TTSCEEE
T ss_pred EEEEEcCCCEEEEEECCCCEEEEEcCCCCC-----EEEEEEcCCCCEEEEEeC-----------CCEEEEEc-CCCCEEE
Confidence 999999 99999999999999999999987 899999999999999987 99999999 5999999
Q ss_pred EEccCCCCCCcccccCCCCCCcccccccccccccccccc-------ccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 396 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA-------LEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 396 tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
++.+|+..+....++++|..+++...+...++|+..++. ...|++|+|+|||+.|+||+.|++|+|||
T Consensus 503 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999877777889999999999999999999865543 34899999999999999999999999998
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.8e-50 Score=427.74 Aligned_cols=329 Identities=9% Similarity=0.017 Sum_probs=269.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC--
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS-- 175 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~-- 175 (464)
|+.|++.+ .+.+++|++.+++.+.++. +|.+.|.+++|+|+|++||++ +.| ++++|||+.+++...
T Consensus 30 g~~l~~~~-~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg----~~d------~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 30 GDKIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASG----DVH------GNVRIWDTTQTTHILKT 97 (611)
T ss_dssp SSEEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEE----ETT------SEEEEEESSSTTCCEEE
T ss_pred CCEEEeCC-CCEEEEecCCCcccCeEec-CCCCceEEEEECCCCcEEEEE----eCC------CCEEEeECCCCcceeeE
Confidence 88888876 5699999998999999994 588999999999999999994 456 799999998766421
Q ss_pred cccceeeccccCceEEEEeCCCCcEEEEecCCC----cEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------Cce
Q 012410 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDS----IYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHV 240 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~----tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~ 240 (464)
.++. +.+.+.+|+|+ |||+.||+++.|. +|++|| +|+++.++. ...|.+|+|+|+ .|+
T Consensus 98 ~~~~----~~~~v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 98 TIPV----FSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp EEEC----SSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred eecc----cCCceEEEEEC-CCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCC
Confidence 1122 23455689997 8999999988763 788888 567766665 568999999884 678
Q ss_pred eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-------cCCCceEEEEEcC
Q 012410 241 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-------TEFMTPSAFIFLY 313 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-------gh~~~v~sv~Fsp 313 (464)
+|+|||.++++++.+|.+|...|.+|+|+| ++..|++++.|++|+|||+.+|+++.++. +|...|.+++|+|
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred eEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 999999999999999998878999999999 46677779999999999999999999884 8999999999999
Q ss_pred CCcEEEEEe-CCeEEEEeC-CCceEEEe-------------------------------------------ccCCCCcCC
Q 012410 314 ENQLFLTFR-NRTVAVWNF-RGELVTSF-------------------------------------------EDHLLWHPD 348 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~-~Ge~l~tl-------------------------------------------~gH~~~~~~ 348 (464)
||++|||++ |++|||||+ +|+++.++ .+|...
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~--- 326 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKA--- 326 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC---
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCC---
Confidence 999999999 999999999 58776554 477776
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-ccCCCCCCcccccCCCCCCccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
|++++|+|||++|+|++. |++|++||+.+|+|+..+ .+|...+....+++ +..+++...+++.++
T Consensus 327 --v~~l~~spdg~~l~s~s~-----------D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 327 --ITALSSSADGKTLFSADA-----------EGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLFTVSWDDHLKV 392 (611)
T ss_dssp --EEEEEECTTSSEEEEEET-----------TSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSCEEEEETTTEEEE
T ss_pred --EEEEEEeCCCCEEEEEeC-----------CCcEEEEECCCCceeeecccCCcceEEEEEECC-CCcEEEEEcCCceEE
Confidence 899999999999999987 999999999999998877 56765333333432 234455555555555
Q ss_pred cccccc------------------------------------------------cccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 428 RSTVGE------------------------------------------------ALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 428 ~~~~~~------------------------------------------------~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
|..... .-..|++++|||||+.||+|+.|++|
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 442210 11358899999999999999999999
Q ss_pred Eecc
Q 012410 460 HVWS 463 (464)
Q Consensus 460 rlWd 463 (464)
+|||
T Consensus 473 ~lwd 476 (611)
T 1nr0_A 473 HVYK 476 (611)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.6e-49 Score=387.29 Aligned_cols=282 Identities=12% Similarity=0.178 Sum_probs=246.5
Q ss_pred cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
..+...++ .+|...|+++.|+|+|+.|+++ +.| ++++||++.+++....++.+. ..+.+++|+ |
T Consensus 44 ~~~~~~~l-~gH~~~v~~~~~s~d~~~l~s~----s~D------g~v~iWd~~~~~~~~~~~~~~----~~v~~~~~s-~ 107 (340)
T 1got_B 44 QMRTRRTL-RGHLAKIYAMHWGTDSRLLLSA----SQD------GKLIIWDSYTTNKVHAIPLRS----SWVMTCAYA-P 107 (340)
T ss_dssp CCCEEEEE-CCCSSCEEEEEECTTSSEEEEE----ETT------TEEEEEETTTCCEEEEEECSS----SCEEEEEEC-T
T ss_pred cchhheee-cCCCCceEEEEECCCCCEEEEE----eCC------CcEEEEECCCCCcceEeecCC----ccEEEEEEC-C
Confidence 34556677 4588999999999999999994 455 799999999998765444333 345589997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCe----EEEEec--CCCEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYT----MLYSIS--DKHVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~----~l~tl~--~~~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
+|++||+|+.|++|+|||+.+++ +...+. ...|..++|++ +.|++|+|||+++|+++.++.+|...+
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v 187 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCce
Confidence 99999999999999999998763 444554 56799999976 478999999999999999999877899
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEecc
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~g 341 (464)
.+++|+| ++..+++++.|++|+|||+++++++.++.+|...|.+++|+|+|++||+++ |++|+|||+ +++++.++..
T Consensus 188 ~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 188 MSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc
Confidence 9999999 456777789999999999999999999999999999999999999999999 999999999 5888888864
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
+... +.|.+++|+|||++|++|+. |++|+|||+.+++++.++.+|..
T Consensus 267 ~~~~---~~v~~~~~s~~g~~l~~g~~-----------d~~i~vwd~~~~~~~~~~~~h~~------------------- 313 (340)
T 1got_B 267 DNII---CGITSVSFSKSGRLLLAGYD-----------DFNCNVWDALKADRAGVLAGHDN------------------- 313 (340)
T ss_dssp TTCC---SCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTCCEEEEEECCSS-------------------
T ss_pred CCcc---cceEEEEECCCCCEEEEECC-----------CCeEEEEEcccCcEeeEeecCCC-------------------
Confidence 3321 23899999999999999987 99999999999999999999997
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+|+|||+.|||||.|++|+|||
T Consensus 314 ---------------~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 314 ---------------RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 899999999999999999999999997
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-47 Score=382.17 Aligned_cols=281 Identities=11% Similarity=0.166 Sum_probs=244.5
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
+...++ .+|...|+++.|+|+|..|++ ++.| ++++|||..+++....+..+ ..++.+++|+ |+|
T Consensus 55 ~~~~~l-~gH~~~V~~~~~s~d~~~l~s----~s~D------g~v~vWd~~~~~~~~~~~~~----~~~v~~~~~s-p~g 118 (354)
T 2pbi_B 55 KTRRTL-KGHGNKVLCMDWCKDKRRIVS----SSQD------GKVIVWDSFTTNKEHAVTMP----CTWVMACAYA-PSG 118 (354)
T ss_dssp CEEEEE-ECCSSCEEEEEECTTSSEEEE----EETT------SEEEEEETTTCCEEEEEECS----SSCCCEEEEC-TTS
T ss_pred EEEEEe-cCCCCeEEEEEECCCCCEEEE----EeCC------CeEEEEECCCCCcceEEecC----CCCEEEEEEC-CCC
Confidence 455677 459999999999999999999 4466 79999999888875443333 2456699997 999
Q ss_pred cEEEEecCCCcEEEEeCCCC------eEEE--EecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 199 KVLTYSAQDSIYKVFDLKNY------TMLY--SISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg------~~l~--tl~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
+.||+|+.|+++++|++... .... ..+...|..++|+|+ .|++|+|||+++|+++++|.+|...
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 99999999999999998653 1223 335678999999874 7899999999999999999987788
Q ss_pred eeeEEEEccC-CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 263 NKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 263 ~~~V~F~~~~-~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
+..++|.|.. +..+++++.|++|++||++++++++++.+|...|.+++|+|+|++|||++ |++|+|||+ .++++..+
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9999998853 45677789999999999999999999999999999999999999999999 999999999 58888888
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
..|.... .+.+++|+|||++|++|+. |++|+|||+.+|+++.++.+|.+
T Consensus 279 ~~~~~~~---~~~~~~~s~~g~~l~~g~~-----------d~~i~vwd~~~~~~~~~l~~h~~----------------- 327 (354)
T 2pbi_B 279 SKESIIF---GASSVDFSLSGRLLFAGYN-----------DYTINVWDVLKGSRVSILFGHEN----------------- 327 (354)
T ss_dssp CCTTCCS---CEEEEEECTTSSEEEEEET-----------TSCEEEEETTTCSEEEEECCCSS-----------------
T ss_pred cCCCccc---ceeEEEEeCCCCEEEEEEC-----------CCcEEEEECCCCceEEEEECCCC-----------------
Confidence 7665422 2789999999999999987 99999999999999999999997
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+|+|||+.|||||.|++|+||+
T Consensus 328 -----------------~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 -----------------RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -----------------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -----------------cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 899999999999999999999999996
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-48 Score=389.94 Aligned_cols=305 Identities=12% Similarity=0.115 Sum_probs=228.4
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
.++++...-+...+.|++....+ ..|...|++|+|||||+.|+++|.+.. .+|+ .++++|+..+|.....+
T Consensus 16 ~~~~~~~~g~~~~~~w~~p~~~p-----~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd---~~v~~~~~~~~~~~~~~ 86 (357)
T 4g56_B 16 ENLYFQSNGSSKGSAWGRPVTAP-----ACMEVQIGAVRYRRDGALLLAASSLSS-RTWG---GSIWVFKDPEGAPNESL 86 (357)
T ss_dssp -----------------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCC---EEEEEESSCC---CGGG
T ss_pred cceEEecCCCccccccCCCCCCc-----ccccCCEEEEEECCCCCEEEEEcCCCC-cccc---CeEEEEECCCCCcceeE
Confidence 34555555566778887654443 358889999999999999999774432 1222 57889999888876544
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe------cCCCEeEEEEeCC--------CceeEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SDKHVQEIKIRSS--------SHVPLK 243 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl------~~~~V~~Vafs~s--------~d~tIk 243 (464)
.....++...+..|+|+ |||++|+ ++.|++|||||+.+++++... +...|.+|+|+|+ .|++|+
T Consensus 87 ~~~~~~~~~~V~~~~~s-~d~~~l~-~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWV-SEKGILV-ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp CSEEEECSSCEEEEEEE-TTTEEEE-EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ecccCCCCCCEEEEEEc-CCCCEEE-EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 33333333445689998 8997665 678999999999999876432 2467999999984 789999
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcCC-CcEEEE
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYE-NQLFLT 320 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~Fspd-gqllaS 320 (464)
|||+++|+++.+|+.|...+.+|+|++..+..+++++.|++|+|||+++++++..+. .|...+.+++|+|+ +++||+
T Consensus 165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence 999999999999998778999999998644567788999999999999999887654 56678999999997 578999
Q ss_pred Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 321 FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 321 ~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
++ |++|+|||+ +++++++|.+|... |++++|+||| ++|||||. |++|+|||+.+|++++++
T Consensus 245 g~~d~~i~~wd~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~~lasgs~-----------D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 245 GDETGNVSLVNIKNPDSAQTSAVHSQN-----ITGLAYSYHSSPFLASISE-----------DCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp EESSSCEEEEESSCGGGCEEECCCSSC-----EEEEEECSSSSCCEEEEET-----------TSCEEEECTTSCEEEEEC
T ss_pred eecccceeEEECCCCcEeEEEecccee-----EEEEEEcCCCCCEEEEEeC-----------CCEEEEEECCCCcEeEEC
Confidence 99 999999999 69999999999988 8999999998 68999987 999999999999999876
Q ss_pred ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEeeCCCcEEeccC
Q 012410 398 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 398 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp-Dg~~LaSgs~DgtVrlWd~ 464 (464)
+|++ .|++|+||| |++.|||||.||+|++|+.
T Consensus 309 -~H~~----------------------------------~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 309 -SHRD----------------------------------FVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp -CCSS----------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred -CCCC----------------------------------CEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 8986 899999999 8999999999999999984
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.6e-49 Score=394.83 Aligned_cols=295 Identities=12% Similarity=0.154 Sum_probs=249.8
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~ 188 (464)
+...|+..+.++..+| .+|...|++|.|+|+|+.|+++ +.| ++++|||+.+|+....+..+. .++
T Consensus 47 ~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp~~~~l~s~----s~D------~~v~iWd~~~~~~~~~~~~h~----~~v 111 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTL-QGHSGKVYSLDWTPEKNWIVSA----SQD------GRLIVWNALTSQKTHAIKLHC----PWV 111 (380)
T ss_dssp GCCCCCCCCCEEEEEE-CCCSSCEEEEEECTTSSCEEEE----ETT------SEEEEEETTTTEEEEEEECCC----TTC
T ss_pred cccccccceeEEeecc-cccccEEEEEEEcCCCCEEEEE----eCC------CeEEEEECCCCccceEEecCC----CCE
Confidence 3455777777888889 5599999999999999999994 456 799999999988765444443 445
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-------EEEEec--CCCEeEEEEeC---------CCceeEEEEEcCCC
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSIS--DKHVQEIKIRS---------SSHVPLKILSIEDG 250 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-------~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~tG 250 (464)
..++|+ |||++||+|+.|++++|||+.+.. +..++. ...|.+++|+| +.|++|+|||+++|
T Consensus 112 ~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 112 MECAFA-PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp CCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC
T ss_pred EEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC
Confidence 589997 899999999999999999997532 222333 45688888866 47899999999999
Q ss_pred cEEEEE-----eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C
Q 012410 251 TVLKVF-----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 251 ~~l~tl-----~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D 323 (464)
+++.++ .+|...+.+++|.+.++..+++++.|++|+|||++ ++++++++.+|...|.+++|+|||++|+|++ |
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 270 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence 999988 44556789999988666778889999999999998 5689999999999999999999999999999 9
Q ss_pred CeEEEEeC-CCceEEEeccCCCCc--CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE---
Q 012410 324 RTVAVWNF-RGELVTSFEDHLLWH--PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI--- 397 (464)
Q Consensus 324 ~TIklWd~-~Ge~l~tl~gH~~~~--~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl--- 397 (464)
++|+|||+ +|+++.++..|.... ....|.+++|+|+|++|++|+. ||+|+|||+.+++++.++
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~ 339 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------NGDCYVWDTLLAEMVLNLGTL 339 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------TSCEEEEETTTCCEEEEECCS
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----------CCCEEEEECCCCceEEEEecc
Confidence 99999999 699999998764321 0112789999999999999986 999999999999999998
Q ss_pred -ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 398 -NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 398 -~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+|.+ .|++|+|||||+.|||||.|++|+||+.
T Consensus 340 ~~~h~~----------------------------------~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 340 QNSHEG----------------------------------RISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSCCC----------------------------------CCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cCCCCC----------------------------------ceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 67876 8999999999999999999999999984
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.9e-48 Score=373.96 Aligned_cols=275 Identities=11% Similarity=0.097 Sum_probs=238.4
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
...++. +|.+.|.+|+|+|+|+.|+++ +.| ++++||++.+|+....+..++ ..+..++|+ |+|+
T Consensus 5 ~~~~~~-~h~~~V~~~~fsp~~~~l~s~----~~d------g~v~lWd~~~~~~~~~~~~~~----~~v~~~~~~-~~~~ 68 (304)
T 2ynn_A 5 IKKTFS-NRSDRVKGIDFHPTEPWVLTT----LYS------GRVELWNYETQVEVRSIQVTE----TPVRAGKFI-ARKN 68 (304)
T ss_dssp CEEEEE-EECSCEEEEEECSSSSEEEEE----ETT------SEEEEEETTTTEEEEEEECCS----SCEEEEEEE-GGGT
T ss_pred eEEeec-CCCCceEEEEECCCCCEEEEE----cCC------CcEEEEECCCCceeEEeeccC----CcEEEEEEe-CCCC
Confidence 345664 488889999999999999994 455 799999999988755444333 334589998 8999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCC-cEEEEEeeCCcceeeEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDG-TVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F 268 (464)
+|++|+.|++|||||+++++++.++. .+.|.+|+|+|+ .|++|+|||++++ .+.+++.+|.+.+.+|+|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 99999999999999999999998886 567999999883 7899999999988 455678877789999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEc-ccCCCceEEEEEcC--CCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~gh~~~v~sv~Fsp--dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
+|.++..+++++.|++|+|||++++++...+ .+|...+..+.|+| ++++|+|++ |++|+|||+ +|+++.+|++|.
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~ 228 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC
Confidence 9965677888999999999999998876555 45667888899986 889999999 999999999 699999999999
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.. |..++|+|++++||||+. ||+|||||+.++++++++.+|..
T Consensus 229 ~~-----v~~~~~~p~~~~l~s~s~-----------Dg~i~iWd~~~~~~~~~~~~~~~--------------------- 271 (304)
T 2ynn_A 229 SN-----VSFAVFHPTLPIIISGSE-----------DGTLKIWNSSTYKVEKTLNVGLE--------------------- 271 (304)
T ss_dssp SC-----EEEEEECSSSSEEEEEET-----------TSCEEEEETTTCCEEEEECCSSS---------------------
T ss_pred CC-----EEEEEECCCCCEEEEEcC-----------CCeEEEEECCCCceeeeccCCCc---------------------
Confidence 88 899999999999999997 99999999999999999999986
Q ss_pred cccccccccccccCEEEEEEcCCCC--EEEEeeCCCcEE
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVH 460 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~--~LaSgs~DgtVr 460 (464)
.|++++|+|+|. .||+|+.||.+-
T Consensus 272 -------------~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 272 -------------RSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp -------------SEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred -------------cEEEEEECCCCCceEEEEecCCceEE
Confidence 899999999986 589999888653
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-47 Score=382.86 Aligned_cols=285 Identities=13% Similarity=0.098 Sum_probs=223.1
Q ss_pred EeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-------cCCCCCcccceeec
Q 012410 111 AAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-------RGKPDSGFALFESE 183 (464)
Q Consensus 111 ~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-------~G~~~~~~~l~~~~ 183 (464)
+.|+...+.+. .+...|.++.|||||+.|+++| + .++++|+.. ......+......+
T Consensus 17 r~w~~~~~~~~-----~~~~~v~~~~fs~dG~~l~~~s----d-------~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~ 80 (344)
T 4gqb_B 17 REWNLPPNAPA-----CMERQLEAARYRSDGALLLGAS----S-------LSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ 80 (344)
T ss_dssp ------CCSCS-----SCCSEEEEEEECTTSCEEEEEE----C-------CSSSCCCEEEEEESSGGGTTCGGGCSEEEE
T ss_pred cccCCCCCCcc-----cccCCEEEEEECCCCCEEEEEe----C-------CceEEeeceeeeeccccccCCcceeeeeec
Confidence 45654444332 3556799999999999998844 3 244555432 11111111111111
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe------cCCCEeEEEEeCC--------CceeEEEEEcCC
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SDKHVQEIKIRSS--------SHVPLKILSIED 249 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl------~~~~V~~Vafs~s--------~d~tIklWdi~t 249 (464)
....+..|+|+ ||+ .|++|+.|++|||||+.+++++.++ +.+.|.+|+|+|+ .|++|+|||+++
T Consensus 81 ~~~~v~~~~~s-~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 81 TEAGVADLTWV-GER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp ESSCEEEEEEE-TTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cCCCEEEEEEe-CCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 12335589998 787 5778999999999999999876443 2568999999884 789999999999
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcC-CCcEEEEEe-CCe
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLY-ENQLFLTFR-NRT 325 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~Fsp-dgqllaS~s-D~T 325 (464)
|+++++|.+|...|.+++|+++....+++++.|++|+|||+++++++..+. .|...+.+++|+| ++++||+++ |++
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 999999998889999999999644456778999999999999999998875 4556789999998 567899999 999
Q ss_pred EEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 326 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 326 IklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
|+|||+ +|+++.+|++|... |++|+|+||| ++|||||. |++|+|||+.+|+++. +.+|++
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~-----v~~v~fsp~g~~~lasgs~-----------D~~i~vwd~~~~~~~~-~~~H~~- 300 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQC-----VTGLVFSPHSVPFLASLSE-----------DCSLAVLDSSLSELFR-SQAHRD- 300 (344)
T ss_dssp EEEEESCC--CCEEEECCSSC-----EEEEEECSSSSCCEEEEET-----------TSCEEEECTTCCEEEE-ECCCSS-
T ss_pred EEEEECCCCcEEEEEcCCCCC-----EEEEEEccCCCeEEEEEeC-----------CCeEEEEECCCCcEEE-EcCCCC-
Confidence 999999 69999999999998 8999999998 58999987 9999999999999875 689987
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEeccC
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|||||+ .|+|||.|++|++|+.
T Consensus 301 ---------------------------------~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 301 ---------------------------------FVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp ---------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred ---------------------------------CEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 899999999997 5789999999999973
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.9e-47 Score=394.56 Aligned_cols=336 Identities=14% Similarity=0.231 Sum_probs=291.7
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..+..+.+. |++|++.+.+|.+++|+ .+++.+..+.. |...|.+++|+|+|+.|++++ .| +++++|
T Consensus 181 ~~v~~~~~~~~~~~l~~~~~d~~v~~w~-~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~----~d------~~i~~w 248 (577)
T 2ymu_A 181 SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS----DD------KTVKLW 248 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEEC-CSSCEEEEEECTTSSCEEEEE----TT------SCEEEE
T ss_pred cceeeeeecCCCCEEEEEcCCCEEEEEe-CCCcEEEEEec-CCCCEEEEEECCCCCEEEEEe----CC------CEEEEE
Confidence 344445454 88999999999999999 78999999954 888899999999999999944 55 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
+ ..|++...+..+. ..+.+|+|+ |||+.|++++.|++|++||. +++++.++. ...|++++|+|+
T Consensus 249 ~-~~~~~~~~~~~~~----~~v~~v~~~-~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 249 N-RNGQLLQTLTGHS----SSVNGVAFR-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp C-TTSCEEEEECCCS----SCEEEEEEC-TTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred e-CCCCEEEEEecCC----CCEEEEEEc-CCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEE
Confidence 9 4566543333332 445589997 89999999999999999996 678888776 568999999884
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
.|++|++||+. ++.+.++..+...+.+++|+| ++..+++++.|++|++|| .++++++++.+|...|.+++|+|||+
T Consensus 322 ~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~ 398 (577)
T 2ymu_A 322 SDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 398 (577)
T ss_dssp ETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred eCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCC
Confidence 67899999986 667788887778899999998 467777789999999999 68999999999999999999999999
Q ss_pred EEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 317 LFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 317 llaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+||+++ |++|+|||.+|+++.++.+|... |++++|+||+++||+++. |++|+|||+ +++++.
T Consensus 399 ~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-----v~~~~~s~d~~~l~~~~~-----------d~~v~~w~~-~~~~~~ 461 (577)
T 2ymu_A 399 TIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VWGVAFSPDDQTIASASD-----------DKTVKLWNR-NGQLLQ 461 (577)
T ss_dssp CEEEEETTSEEEEECTTCCEEEEEECCSSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEET-TSCEEE
T ss_pred EEEEEeCCCEEEEEeCCCCEEEEecCCCCC-----eEEEEECCCCCEEEEEcC-----------CCEEEEEEC-CCCEEE
Confidence 999999 99999999999999999999987 899999999999999987 999999995 899999
Q ss_pred EEccCCCCCCcccccCCCCCCccccccccccccccccccc-------cCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 396 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL-------EDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 396 tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
++.+|...+....+++++..+++...+...++|+..++.+ ..|++|+|||||+.||||+.||+|+|||
T Consensus 462 ~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999998666678889999999999999999998655433 3899999999999999999999999998
No 13
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6e-47 Score=381.13 Aligned_cols=274 Identities=15% Similarity=0.236 Sum_probs=239.8
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec--------------cccCceEEE
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE--------------SLKWPGFVE 192 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~--------------~~~~~~~Va 192 (464)
.|...|.+++|||||+.||+ +++ ++++||++.+|+....+..+... ...++.+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~----g~~-------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 130 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLAT----GCN-------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEE----ECB-------SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEE----EcC-------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE
Confidence 48888999999999999988 344 48999999999875433222110 011355899
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
|+ |||++||+|+.|++|+|||+.+++++.++. ...|.+++|+|+ .|++|+|||+++|++..++.+. ..
T Consensus 131 ~s-~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~ 208 (393)
T 1erj_A 131 FS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DG 208 (393)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SC
T ss_pred EC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC-CC
Confidence 97 899999999999999999999999998887 467999999884 7899999999999999999864 67
Q ss_pred eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-------ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC--
Q 012410 263 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 332 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-------~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-- 332 (464)
+..++|+|.++..+++++.|++|+|||++++++++.+ .+|...|.+++|+|||++|+|++ |++|+|||+.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 8999999966677888999999999999999998877 68999999999999999999999 9999999983
Q ss_pred -----------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 333 -----------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 333 -----------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
+.|..++.+|..+ |.+++|+|+|++|+||+. |++|+|||+.+|+++.++++|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~sgs~-----------D~~v~iwd~~~~~~~~~l~~h~ 352 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQNDEYILSGSK-----------DRGVLFWDKKSGNPLLMLQGHR 352 (393)
T ss_dssp ------------CEEEEEECCSSC-----EEEEEECGGGCEEEEEET-----------TSEEEEEETTTCCEEEEEECCS
T ss_pred CCcccccCCCCCcceEEEecccCc-----EEEEEECCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEECCCC
Confidence 5678899999998 899999999999999997 9999999999999999999999
Q ss_pred CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC------CCCEEEEeeCCCcEEecc
Q 012410 402 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE------ERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp------Dg~~LaSgs~DgtVrlWd 463 (464)
+ .|.+++|+| +++.|||||.||+|+||+
T Consensus 353 ~----------------------------------~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 353 N----------------------------------SVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp S----------------------------------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred C----------------------------------CEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 7 899999986 799999999999999997
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.5e-46 Score=363.03 Aligned_cols=289 Identities=11% Similarity=0.129 Sum_probs=239.7
Q ss_pred cEeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEEEeCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDV 196 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~p 196 (464)
++..+| .+|...|.+|+|+|++ +.|++ ++.| +++++|++..++...+.++.+. .+...+..++|+ |
T Consensus 8 ~l~~~l-~gH~~~V~~l~~~~~~~~~l~s----~s~D------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~ 75 (319)
T 3frx_A 8 VLRGTL-EGHNGWVTSLATSAGQPNLLLS----ASRD------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT-A 75 (319)
T ss_dssp EEEEEE-CCCSSCEEEEEECSSCTTEEEE----EETT------SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-T
T ss_pred EEEEEE-ccccceEEEEEccCCCccEEEE----ecCC------ccEEEecCCCCCccccccceEEeCCcccEEEEEEC-C
Confidence 344567 5699999999999976 78888 4566 7999999976543222222221 122334489997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKV 266 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V 266 (464)
||++|++|+.|++|||||+++++++.++. ...|.+|+|+| +.|++|+|||++ |+++.++.+|...+..+
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 99999999999999999999999998876 56899999987 378999999996 78999999777889999
Q ss_pred EEEccC-----CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 267 DFIEQF-----NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 267 ~F~~~~-----~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
+|+|.. +..+++++.|++|++||++++++...+.+|...|.+++|+|||++|||++ |++|+|||+ +++++.++
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 998842 23677789999999999999999999999999999999999999999999 999999999 69999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
..|. . |.+++|+|||.+|++++ +..|++|++.++.++..++++... ..
T Consensus 235 ~~~~-~-----v~~~~~sp~~~~la~~~------------~~~i~v~~~~~~~~~~~~~~~~~~-~~------------- 282 (319)
T 3frx_A 235 SAQD-E-----VFSLAFSPNRYWLAAAT------------ATGIKVFSLDPQYLVDDLRPEFAG-YS------------- 282 (319)
T ss_dssp ECCS-C-----EEEEEECSSSSEEEEEE------------TTEEEEEEETTEEEEEEECCCCTT-CC-------------
T ss_pred cCCC-c-----EEEEEEcCCCCEEEEEc------------CCCcEEEEeCcCeeeeccCccccc-cc-------------
Confidence 8764 3 89999999999999987 567999999999999998765420 00
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
...-..|.+++|||||+.||||+.||+|+|||.
T Consensus 283 ------------~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 283 ------------KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp ------------GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ------------cCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 001127899999999999999999999999983
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-46 Score=368.35 Aligned_cols=283 Identities=12% Similarity=0.108 Sum_probs=234.1
Q ss_pred ccEeeEeecCCCc-eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 118 NRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 118 g~~l~~ln~~~~~-~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
.+++.++.. |.+ .|++++|+|+|+.||+ ++.| ++|+||++..++...... +..++...+.+|+|+ |
T Consensus 5 ~~~~~~~~~-h~~~~v~~l~~sp~g~~las----~~~D------~~i~iw~~~~~~~~~~~~-~~~~h~~~v~~~~~s-p 71 (345)
T 3fm0_A 5 LVLLGRVPA-HPDSRCWFLAWNPAGTLLAS----CGGD------RRIRIWGTEGDSWICKSV-LSEGHQRTVRKVAWS-P 71 (345)
T ss_dssp EEEEEEECC-STTSCEEEEEECTTSSCEEE----EETT------SCEEEEEEETTEEEEEEE-ECSSCSSCEEEEEEC-T
T ss_pred EEEeeeecC-CCCCcEEEEEECCCCCEEEE----EcCC------CeEEEEEcCCCcceeeee-eccccCCcEEEEEEC-C
Confidence 456778854 665 8999999999999999 4456 799999998875421111 111233445589997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCC--eEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCC---cEEEEEeeCCc
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDG---TVLKVFYHLLH 261 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg--~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG---~~l~tl~~~~~ 261 (464)
||++||+|+.|++|+|||+.++ +++.++. ...|.+|+|+|+ .|++|+|||+.++ +++.++..|..
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 9999999999999999999877 4677776 468999999984 7899999999877 46677877778
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc--EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C-----
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R----- 332 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~--~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~----- 332 (464)
.+..|+|+| ++..|++++.|++|+|||+.+++ ++.++.+|...|++++|+|+|++|||++ |++|+|||. .
T Consensus 152 ~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 152 DVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp CEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred CeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence 899999999 46778889999999999999886 6678999999999999999999999999 999999995 2
Q ss_pred ----------CceEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---------
Q 012410 333 ----------GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--------- 392 (464)
Q Consensus 333 ----------Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--------- 392 (464)
.+|+.++.+ |... |++++|+|++.+||++|. |++|+||++.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~l~s~~~-----------d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRT-----IYDIAWCQLTGALATACG-----------DDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSC-----EEEEEECTTTCCEEEEET-----------TSCEEEEEECTTSCTTSCCEEE
T ss_pred cceeeccCCccceeEEecCCCCCc-----EEEEEEecCCCEEEEEeC-----------CCeEEEEEeCCCCCcceeeEEE
Confidence 256778887 7666 899999999999999987 9999999987653
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEeccC
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd~ 464 (464)
....+.+|.. .|++|+|+|++ ..|||||.||+|+||+.
T Consensus 295 ~~~~~~~h~~----------------------------------~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 295 TAHLHQAHSQ----------------------------------DVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp EEEETTSSSS----------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred EeeecccccC----------------------------------cEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 1233457775 89999999998 49999999999999973
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.8e-45 Score=350.87 Aligned_cols=282 Identities=14% Similarity=0.171 Sum_probs=244.1
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
+...++ .+|...|.+++|+|+|+.|+++ +.| ++++||++.+|++...+..+. ..+..++|+ |||
T Consensus 14 ~~~~~~-~gh~~~v~~~~~s~~~~~l~s~----~~d------g~i~iw~~~~~~~~~~~~~h~----~~v~~~~~~-~~~ 77 (312)
T 4ery_A 14 ALKFTL-AGHTKAVSSVKFSPNGEWLASS----SAD------KLIKIWGAYDGKFEKTISGHK----LGISDVAWS-SDS 77 (312)
T ss_dssp EEEEEE-CCCSSCEEEEEECTTSSEEEEE----ETT------SCEEEEETTTCCEEEEECCCS----SCEEEEEEC-TTS
T ss_pred eeEEEE-cccCCcEEEEEECCCCCEEEEe----eCC------CeEEEEeCCCcccchhhccCC----CceEEEEEc-CCC
Confidence 344456 5688999999999999999994 455 699999999988754443333 334489997 899
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
++|++|+.|++|+|||+.+++++.++. ...|..++|+|+ .|++|++||++++++++++..+...+.+++|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence 999999999999999999999998886 567999999883 7899999999999999999977788999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW 345 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~ 345 (464)
+| ++..+++++.|++|++||+++++++..+. .|...+..++|+|+|++|++++ |++|+|||+ +|+++.++.+|...
T Consensus 158 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (312)
T 4ery_A 158 NR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236 (312)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred cC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc
Confidence 98 46677789999999999999999988764 5566788999999999999999 999999999 69999999999875
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccc
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 425 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
... +......+++++|++|+. ||+|+|||+.++++++++++|..
T Consensus 237 ~~~--~~~~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~h~~----------------------- 280 (312)
T 4ery_A 237 KYC--IFANFSVTGGKWIVSGSE-----------DNLVYIWNLQTKEIVQKLQGHTD----------------------- 280 (312)
T ss_dssp SSC--CCEEEECSSSCEEEECCT-----------TSCEEEEETTTCCEEEEECCCSS-----------------------
T ss_pred eEE--EEEEEEeCCCcEEEEECC-----------CCEEEEEECCCchhhhhhhccCC-----------------------
Confidence 432 344555688999999986 99999999999999999999987
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEee--CCCcEEeccC
Q 012410 426 YIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWSN 464 (464)
Q Consensus 426 ~~~~~~~~~l~~V~slafspDg~~LaSgs--~DgtVrlWd~ 464 (464)
.|++++|+|+++.|||++ .|++|++|+.
T Consensus 281 -----------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 281 -----------VVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp -----------CEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred -----------cEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 899999999999999997 6999999973
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-45 Score=356.74 Aligned_cols=282 Identities=18% Similarity=0.168 Sum_probs=227.3
Q ss_pred cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec-cccCceEEEEeC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDD 195 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-~~~~~~~VaFs~ 195 (464)
+.+++..+. +|.+.|+++.|+|+ .|++ ++.| ++++||++..++... ...+... +.+.+.+|+|+
T Consensus 3 ~~~~~~~~~-~h~~~v~~~~~s~~--~las----~~~D------~~i~lw~~~~~~~~~-~~~~~~~~h~~~v~~v~~s- 67 (330)
T 2hes_X 3 SINLIKSLK-LYKEKIWSFDFSQG--ILAT----GSTD------RKIKLVSVKYDDFTL-IDVLDETAHKKAIRSVAWR- 67 (330)
T ss_dssp CCEEEEEEE-CCSSCEEEEEEETT--EEEE----EESS------SCEEEEECSSSCCEE-EEEECTTCCCSCEEEEEEC-
T ss_pred ccccceeec-cCCCceeeeccCCC--EEEE----EcCC------CEEEEEEecCCCeEE-EEEEecCCccCCEEEEEEC-
Confidence 456777885 58999999999996 7888 4456 799999998765311 0111111 33445589997
Q ss_pred CCCcEEEEecCCCcEEEEeCC-------CCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcC-C---CcEEE
Q 012410 196 VNGKVLTYSAQDSIYKVFDLK-------NYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIE-D---GTVLK 254 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~-------tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~-t---G~~l~ 254 (464)
|+|++||+|+.|++|||||+. +++++.++. ...|.+|+|+|+ .|++|+|||+. . .+++.
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 899999999999999999985 346777776 568999999984 78999999994 3 36888
Q ss_pred EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC--cEEEEcccCCCceEEEEEcCC--CcEEEEEe-CCeEEEE
Q 012410 255 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVW 329 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg--~~l~~l~gh~~~v~sv~Fspd--gqllaS~s-D~TIklW 329 (464)
++.+|...+.+|+|+| ++..|++++.|++|||||+.++ +|+.++.+|...|++++|+|+ +.+|+|++ |++|+||
T Consensus 148 ~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp EECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred EeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 9987778899999999 4667788999999999999887 789999999999999999999 78999999 9999999
Q ss_pred eCC-C--------ceEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe--EEEEE
Q 012410 330 NFR-G--------ELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--CLAKI 397 (464)
Q Consensus 330 d~~-G--------e~l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--cl~tl 397 (464)
|+. + +++.++.+ |..+ |++++|+|++ +|||++. ||+|+|||+.+|+ ++.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~s~~~-~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQ-----VYNVAWGFNG-LIASVGA-----------DGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSC-----EEEEEECTTS-CEEEEET-----------TSCEEEEEEETTEEEEEEEE
T ss_pred EecCCCccccceeEEeeecccccccc-----eEEEEEcCCC-EEEEEeC-----------CCEEEEEEcCCCceEEEecc
Confidence 984 4 57788887 8877 8999999776 7889886 9999999998884 45443
Q ss_pred -ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC--CCCEEEEeeCCCcEEeccC
Q 012410 398 -NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE--ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 398 -~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp--Dg~~LaSgs~DgtVrlWd~ 464 (464)
.+|.. ..|++|+|+| |++.|||||.||+|+|||.
T Consensus 290 ~~~h~~---------------------------------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 290 ALCHGV---------------------------------YEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp SCTTTT---------------------------------SCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred cccccc---------------------------------ceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 67763 1699999999 8999999999999999984
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-45 Score=355.97 Aligned_cols=316 Identities=12% Similarity=0.090 Sum_probs=266.7
Q ss_pred hhhhccccceEEEEec--cc-eeehhccCCeEEeeec----cccc------EeeEeec---------CCCceEEEEEEee
Q 012410 82 LPFLMKRTKVIEIVAA--RD-IVFALAHSGVCAAFSR----ETNR------RICFLNV---------SPDEVIRSLFYNK 139 (464)
Q Consensus 82 l~~l~~~s~v~~~~~a--g~-~l~~l~~~g~~~~~~~----~~g~------~l~~ln~---------~~~~~i~Sv~fs~ 139 (464)
|.......+|..+.+. |+ +|++++.+|.+++|++ .+|+ ....+.. +|...|.+++|+|
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 3333334567777776 77 9999999999999999 8888 4555533 1677899999999
Q ss_pred CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe
Q 012410 140 NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT 219 (464)
Q Consensus 140 ~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~ 219 (464)
+|+.|++++ .+ ++++||+ .+|+....+..+. ..+.+++|+ |+|+.|++++.|++|++||+.+++
T Consensus 119 ~~~~l~~~~----~d------g~i~i~~-~~~~~~~~~~~~~----~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 119 DGNSIVTGV----EN------GELRLWN-KTGALLNVLNFHR----APIVSVKWN-KDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp TSSEEEEEE----TT------SCEEEEE-TTSCEEEEECCCC----SCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCEEEEEe----CC------CeEEEEe-CCCCeeeeccCCC----ccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCc
Confidence 999999944 45 6899999 6676644333332 345589997 899999999999999999999999
Q ss_pred EEEEecC--CC---------------EeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe
Q 012410 220 MLYSISD--KH---------------VQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 220 ~l~tl~~--~~---------------V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
++..+.. .. |.+++|+| +.|+.|++||+.+++++.++..+...+..++|+|. +..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 261 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-NKL 261 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-TTE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-CCE
Confidence 9988762 33 88888876 47789999999999999999877788999999994 667
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeE
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~s 353 (464)
+++++.|++|+|||+.+++++..+.+|...|.+++|+|++ +|++++ |++|++||+ +++++.++.+|... |.+
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~ 335 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP-----IFA 335 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC-----EEE
T ss_pred EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc-----EEE
Confidence 8889999999999999999999999999999999999999 888988 999999999 69999999999887 899
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe--------------------EEEEEccCCCCCCcccccCCC
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--------------------CLAKINATNCSPKVDDELGSS 413 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--------------------cl~tl~gh~~~~~~~~~~~~~ 413 (464)
++|+|||++||+++. ||+|+|||+.+++ ++.++.+|..
T Consensus 336 ~~~s~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 393 (425)
T 1r5m_A 336 GRISQDGQKYAVAFM-----------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD----------- 393 (425)
T ss_dssp EEECTTSSEEEEEET-----------TSCEEEEECHHHHC--------------CEECCEEEEECCTTC-----------
T ss_pred EEEcCCCCEEEEEEC-----------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc-----------
Confidence 999999999999987 9999999999999 9999999853
Q ss_pred CCCcccccccccccccccccccc-CEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 414 STGKSKKLNKSSYIRSTVGEALE-DITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~-~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
. .|++++|+|||+.||+|+.||+|++||.
T Consensus 394 ----------------------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 394 ----------------------NDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ----------------------CCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ----------------------CCceEEEEccCCCceEEEEecCceEEEEee
Confidence 1 6999999999999999999999999984
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.4e-44 Score=340.96 Aligned_cols=295 Identities=13% Similarity=0.146 Sum_probs=237.8
Q ss_pred cccccEeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEE
Q 012410 115 RETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVE 192 (464)
Q Consensus 115 ~~~g~~l~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~Va 192 (464)
.++.++..+| .+|...|++|+|+|+ ++.|+| ++.| ++|+||++.+++...+.+..+. ++...+.+++
T Consensus 25 ~~~~~l~~tL-~GH~~~V~~v~~sp~~~~~l~S----~s~D------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~ 93 (340)
T 4aow_A 25 TEQMTLRGTL-KGHNGWVTQIATTPQFPDMILS----ASRD------KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93 (340)
T ss_dssp -CEEEEEEEE-CCCSSCEEEEEECTTCTTEEEE----EETT------SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE
T ss_pred CCceEEEEEE-CCccCCEEEEEEeCCCCCEEEE----EcCC------CeEEEEECCCCCcccceeeEEEeCCCCCEEEEE
Confidence 3455666788 569999999999998 689999 4466 7999999998887554443331 1234455899
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEE-EeeCCc
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKV-FYHLLH 261 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~t-l~~~~~ 261 (464)
|+ |||++|++|+.|++|++|+...+....... ...+..+.+++ +.|+.+++||+........ +..+..
T Consensus 94 ~s-~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 94 IS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp EC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred EC-CCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 97 899999999999999999999988876554 45677777766 4789999999986655433 235567
Q ss_pred ceeeEEEEccCCCe-EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 262 RNKKVDFIEQFNEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 262 ~~~~V~F~~~~~~~-lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
.+..++|++..... +++++.|++|++||+++++++..+.+|...|.+++|+|||++|++++ |++|+|||+ +++++..
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 78999998865444 45578999999999999999999999999999999999999999999 999999999 6999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
+.+|.. |..++|+|++.+++++. |++|+|||+.+++++.+++.+.....
T Consensus 253 ~~~~~~------v~~~~~~~~~~~~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~------------- 301 (340)
T 4aow_A 253 LDGGDI------INALCFSPNRYWLCAAT------------GPSIKIWDLEGKIIVDELKQEVISTS------------- 301 (340)
T ss_dssp EECSSC------EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECCC------------------
T ss_pred ecCCce------EEeeecCCCCceeeccC------------CCEEEEEECCCCeEEEeccccceeee-------------
Confidence 988753 88999999998887654 89999999999999999876542000
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.......|++|+|+|||+.||||+.||+|+|||.
T Consensus 302 ------------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 302 ------------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ------------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 0011128999999999999999999999999983
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.9e-44 Score=353.00 Aligned_cols=291 Identities=11% Similarity=0.122 Sum_probs=228.7
Q ss_pred ccEeeEeecCCCceEEEEEE-----ee-CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc--cccee-eccccCc
Q 012410 118 NRRICFLNVSPDEVIRSLFY-----NK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FALFE-SESLKWP 188 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~f-----s~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~--~~l~~-~~~~~~~ 188 (464)
.+++..|. +|.+.|++|+| ++ +|+.|++ ++.| ++++||++..++.... .+... .++...+
T Consensus 11 ~~~~~~l~-gH~~~V~~~~~~~s~~~~~d~~~l~s----gs~D------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 11 VVKRGILE-GHSDWVTSIVAGFSQKENEDSPVLIS----GSRD------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEEEE-CCSSCEEEEEECCCSSTTCCCCEEEE----EETT------SCEEEEEECSSCCSSBSEEEEEEECCCSSCE
T ss_pred eeeeeeec-cchhhhhheeeEEEeecCCCCCEEEE----EcCC------CEEEEEECCcCCcccccccccchhccCCCce
Confidence 45566774 59999999999 76 9999999 4566 7999999987654321 11111 1123345
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe-
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY- 257 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~- 257 (464)
..|+|+ |+|++|++|+.|++|||||+++++++.++. ...|.+|+|+|+ .|++|+|||+. +++...+.
T Consensus 80 ~~~~~~-~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~ 157 (343)
T 2xzm_R 80 SDLALS-QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAE 157 (343)
T ss_dssp EEEEEC-SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEECCT
T ss_pred EEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeeeec
Confidence 589997 899999999999999999999999998876 568999999984 78999999998 66665554
Q ss_pred --eCCcceeeEEEEccC---------CCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 258 --HLLHRNKKVDFIEQF---------NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 258 --~~~~~~~~V~F~~~~---------~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
.+...+.+++|+|.. +..+++++.|++|+||| .+++++.++.+|...|.+++|+|||++|||++ |++
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 455678999999853 14677799999999999 67888899999999999999999999999999 999
Q ss_pred EEEEeC-C-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE--EEccCC
Q 012410 326 VAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA--KINATN 401 (464)
Q Consensus 326 IklWd~-~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~--tl~gh~ 401 (464)
|+|||+ + +.+...+. |... |++++|+||+++|++++ |++|+|||+.+++++. ++..+.
T Consensus 237 v~iwd~~~~~~~~~~~~-~~~~-----v~~v~~sp~~~~la~~~------------d~~v~iw~~~~~~~~~~~~~~~~~ 298 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFD-AGST-----INQIAFNPKLQWVAVGT------------DQGVKIFNLMTQSKAPVCTIEAEP 298 (343)
T ss_dssp EEEEESSCCSSCSEEEE-CSSC-----EEEEEECSSSCEEEEEE------------SSCEEEEESSSCCSCSEEECCCCS
T ss_pred EEEEECCCCcccceeec-CCCc-----EEEEEECCCCCEEEEEC------------CCCEEEEEeCCCCCCceEEeecCc
Confidence 999999 5 55666663 3333 89999999999998765 8899999999988765 554221
Q ss_pred CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 402 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
. .... ........|++|+|+|||+.||+|+.||+|++|+
T Consensus 299 ~---~~~~--------------------~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 299 I---TKAE--------------------GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp G---GGBT--------------------TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred c---hhhh--------------------hhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 0 0000 0000112799999999999999999999999997
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-44 Score=366.97 Aligned_cols=269 Identities=10% Similarity=0.159 Sum_probs=241.4
Q ss_pred ccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 88 ~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
+.+|..+.+. +++|++++.||.+++||..+|+.+..+. +|.+.|.+|+|+|+|+.|+++ +.| ++++|
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sg----s~D------~~i~i 176 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASC----SAD------MTIKL 176 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEE----ETT------SCCCE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEE----eCC------CeEEE
Confidence 3567777776 8899999999999999999999999995 588899999999999999994 456 79999
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC------
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------ 237 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------ 237 (464)
||+.++++...+..|. ..+.+|+|+ |+|+.|++|+.|++|++||+.+++++.++. ...|..++|+|+
T Consensus 177 wd~~~~~~~~~~~~h~----~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHD----HNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp EETTSSCEEECCCCCS----SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeCCCCceeEEEcCCC----CCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 9999988866555544 334589997 899999999999999999999999998886 567999999873
Q ss_pred --CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-------------------CCeEEEEeCCCeEEEEECCCCcEE
Q 012410 238 --SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-------------------NEKLLVKQENENLQILDVRNAELM 296 (464)
Q Consensus 238 --~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-------------------~~~lla~s~D~tIkIWDv~tg~~l 296 (464)
.|++|+|||+.++++..++..|.+.+.+++|+|.. +..+++++.|++|+|||+++++++
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 78999999999999999999877899999998842 346777999999999999999999
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 297 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 297 ~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
.++.+|...|.+++|+|+|++|+|++ |++|+|||+ +++++.++.+|... |++++|+|++.+|||||.
T Consensus 332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~sgs~------ 400 (410)
T 1vyh_C 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSV------ 400 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSSSSCEEEEET------
T ss_pred EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc-----EEEEEEcCCCCEEEEEeC------
Confidence 99999999999999999999999999 999999999 69999999999988 899999999999999997
Q ss_pred cccCCCCeEEEEeC
Q 012410 375 WMEGSAGSINVSSI 388 (464)
Q Consensus 375 ~~~s~DgtIklWdi 388 (464)
||+|||||+
T Consensus 401 -----D~~i~vW~~ 409 (410)
T 1vyh_C 401 -----DQTVKVWEC 409 (410)
T ss_dssp -----TSEEEEEC-
T ss_pred -----CCcEEEEeC
Confidence 999999985
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-44 Score=349.18 Aligned_cols=227 Identities=13% Similarity=0.189 Sum_probs=205.0
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~t 255 (464)
..+.+|+|+ |||++|++|+.|++|||||++++++++++. ...|.+++|+| +.|++|+|||+++|+++.+
T Consensus 14 ~~V~~~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 14 DRVKGIDFH-PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp SCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 445599997 899999999999999999999999998876 56799999987 4789999999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~- 331 (464)
+.+|...+.+|+|+|+ +..+++++.|++|+|||++++ .+.+++.+|...|.+++|+| ++++|||++ |++|+|||+
T Consensus 93 ~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~ 171 (304)
T 2ynn_A 93 FEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (304)
T ss_dssp EECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred EeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 9988789999999994 667888999999999999998 56678999999999999999 789999999 999999999
Q ss_pred CCceEEEecc-CCCCcCCCCeeEEEECC--CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 332 RGELVTSFED-HLLWHPDCNTNNIYITS--DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 332 ~Ge~l~tl~g-H~~~~~~~~v~svafSp--Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
++++..++.. |... |+.+.|+| |+++||||+. |++|+|||+.+++|+.++++|..
T Consensus 172 ~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~s~s~-----------D~~i~iWd~~~~~~~~~~~~h~~------ 229 (304)
T 2ynn_A 172 QSTPNFTLTTGQERG-----VNYVDYYPLPDKPYMITASD-----------DLTIKIWDYQTKSCVATLEGHMS------ 229 (304)
T ss_dssp CSSCSEEEECCCTTC-----EEEEEECCSTTCCEEEEEET-----------TSEEEEEETTTTEEEEEEECCSS------
T ss_pred CCCccceeccCCcCc-----EEEEEEEEcCCCCEEEEEcC-----------CCeEEEEeCCCCccceeeCCCCC------
Confidence 5777666654 4444 78899987 8889999997 99999999999999999999987
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+|+++.||||+.||+|+|||.
T Consensus 230 ----------------------------~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 230 ----------------------------NVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp ----------------------------CEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred ----------------------------CEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 8999999999999999999999999984
No 23
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-44 Score=406.95 Aligned_cols=337 Identities=11% Similarity=0.107 Sum_probs=273.6
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|..+.+. |++||+++.+|.+++|+..+++.+..+ .|...|++|+|+| |+.|+++| .| ++++||
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fsp-g~~L~S~s----~D------~~v~lW 84 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVK-GIYLVVIN----AK------DTVYVL 84 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEET-TTEEEEEE----TT------CEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcC-CCEEEEEE----Cc------CeEEEE
Confidence 456667666 899999999999999998777776665 3678899999999 88898844 55 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE-EEe------------cCCCEeEEE
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSI------------SDKHVQEIK 233 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l-~tl------------~~~~V~~Va 233 (464)
|+.+|++...+. +-..+.+|+|+ |+|++|++|+.|++|+|||+.++++. +.+ +...|.+|+
T Consensus 85 d~~~~~~~~~~~-----~~~~V~~v~~s-p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~ 158 (902)
T 2oaj_A 85 SLYSQKVLTTVF-----VPGKITSIDTD-ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158 (902)
T ss_dssp ETTTCSEEEEEE-----CSSCEEEEECC-TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred ECCCCcEEEEEc-----CCCCEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence 999998754332 22445689997 99999999999999999999999875 222 246799999
Q ss_pred EeCC---------CceeEEEEEcCCCcEEEEEeeC------------------CcceeeEEEEccCCCeEEEEeCCCeEE
Q 012410 234 IRSS---------SHVPLKILSIEDGTVLKVFYHL------------------LHRNKKVDFIEQFNEKLLVKQENENLQ 286 (464)
Q Consensus 234 fs~s---------~d~tIklWdi~tG~~l~tl~~~------------------~~~~~~V~F~~~~~~~lla~s~D~tIk 286 (464)
|+|+ .|++| |||++++++++++.++ ...+.+|+|+|+ +..|++++.|++|+
T Consensus 159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 159 WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIITIHEDNSLV 236 (902)
T ss_dssp EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SSEEEEEETTCCEE
T ss_pred EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CCEEEEEECCCeEE
Confidence 9983 78999 9999999999999854 356899999994 67788899999999
Q ss_pred EEECCCCcEEEE--cc---cC-------------CCc-------------------------------------------
Q 012410 287 ILDVRNAELMEV--SR---TE-------------FMT------------------------------------------- 305 (464)
Q Consensus 287 IWDv~tg~~l~~--l~---gh-------------~~~------------------------------------------- 305 (464)
|||+++|+++.. +. +| ...
T Consensus 237 lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~ 316 (902)
T 2oaj_A 237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRY 316 (902)
T ss_dssp EEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCG
T ss_pred EEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCc
Confidence 999988877542 10 00 000
Q ss_pred --------------------------------------------------------------------------------
Q 012410 306 -------------------------------------------------------------------------------- 305 (464)
Q Consensus 306 -------------------------------------------------------------------------------- 305 (464)
T Consensus 317 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~ 396 (902)
T 2oaj_A 317 SITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQN 396 (902)
T ss_dssp GGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGG
T ss_pred cccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCc
Confidence
Q ss_pred -------eE----------------------------------EEEEcCCCcEEEEEe-CCeEEEEeC-CCceE--EE--
Q 012410 306 -------PS----------------------------------AFIFLYENQLFLTFR-NRTVAVWNF-RGELV--TS-- 338 (464)
Q Consensus 306 -------v~----------------------------------sv~FspdgqllaS~s-D~TIklWd~-~Ge~l--~t-- 338 (464)
|+ +++|+|||++|||++ |+||||||+ +|++. ..
T Consensus 397 l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~ 476 (902)
T 2oaj_A 397 LSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFE 476 (902)
T ss_dssp GTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEE
T ss_pred ccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEE
Confidence 01 123467888999999 999999999 46432 11
Q ss_pred --ec-----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC--------------------
Q 012410 339 --FE-----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-------------------- 391 (464)
Q Consensus 339 --l~-----gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-------------------- 391 (464)
+. +|..+ |++|+|||||++||+|+. ||+|||||+.++
T Consensus 477 ~~l~~~~~~~h~~~-----V~svafspdg~~LAsgs~-----------DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 540 (902)
T 2oaj_A 477 VNLSRTLNKAKELA-----VDKISFAAETLELAVSIE-----------TGDVVLFKYEVNQFYSVENRPESGDLEMNFRR 540 (902)
T ss_dssp EEHHHHTTCSSSCC-----EEEEEEETTTTEEEEEET-----------TSCEEEEEEEECCC---------------CCS
T ss_pred eechhhcCCCCCCc-----eeEEEecCCCCeEEEEec-----------CcEEEEEEecCccccCccccCCCcccceeeee
Confidence 22 88887 999999999999999997 999999999877
Q ss_pred -------------------------eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc-------------
Q 012410 392 -------------------------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE------------- 433 (464)
Q Consensus 392 -------------------------~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 433 (464)
+|+++|++|+..+....++++| .+|++..+++.++|.....
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~ 619 (902)
T 2oaj_A 541 FSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISG 619 (902)
T ss_dssp CCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCS
T ss_pred ccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcc
Confidence 5899999999877777899999 9999999999999886442
Q ss_pred -cccCEEEEEEc-----CCC---CEEEEeeCCCcEEecc
Q 012410 434 -ALEDITSLFYD-----EER---NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 434 -~l~~V~slafs-----pDg---~~LaSgs~DgtVrlWd 463 (464)
+...|++|+|| ||| ++|+||+.|++|++||
T Consensus 620 gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 620 AQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp SCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 22359999999 986 8999999999999998
No 24
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-46 Score=365.57 Aligned_cols=333 Identities=14% Similarity=0.111 Sum_probs=251.5
Q ss_pred cceeehhccCCeEEeeeccccc---EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC---
Q 012410 98 RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--- 171 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~---~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G--- 171 (464)
|+++++.+.+|.+++|+..+++ .+..+ .|...|.+++|+|+|+.|++++ .| ++++||++.+.
T Consensus 35 g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~----~d------g~v~vw~~~~~~~~ 102 (416)
T 2pm9_A 35 GTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGAL----DN------GSLELYSTNEANNA 102 (416)
T ss_dssp SCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEE----SS------SCEEEECCSSTTSC
T ss_pred cccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEc----cC------CeEEEeeccccccc
Confidence 3444444899999999988886 44444 4778899999999999999944 45 69999999772
Q ss_pred -CCCCcccceeeccccCceEEEEeCCC-CcEEEEecCCCcEEEEeCCCCe------EEEEe-----cCCCEeEEEEeCC-
Q 012410 172 -KPDSGFALFESESLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYT------MLYSI-----SDKHVQEIKIRSS- 237 (464)
Q Consensus 172 -~~~~~~~l~~~~~~~~~~~VaFs~pd-Gk~LaSgs~D~tiKlWdl~tg~------~l~tl-----~~~~V~~Vafs~s- 237 (464)
+....+.. +...+..++|+ |+ +++|++++.|++|+|||+.+++ ....+ +...|.+++|+|+
T Consensus 103 ~~~~~~~~~----h~~~v~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (416)
T 2pm9_A 103 INSMARFSN----HSSSVKTVKFN-AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL 177 (416)
T ss_dssp CCEEEECCC----SSSCCCEEEEC-SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC
T ss_pred ccchhhccC----CccceEEEEEc-CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC
Confidence 22222222 22345589997 77 9999999999999999999987 44333 3568999999874
Q ss_pred --------CceeEEEEEcCCCcEEEEEeeC------CcceeeEEEEccCCCeEEEEeCCC---eEEEEECCCC-cEEEEc
Q 012410 238 --------SHVPLKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFNEKLLVKQENE---NLQILDVRNA-ELMEVS 299 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~~~------~~~~~~V~F~~~~~~~lla~s~D~---tIkIWDv~tg-~~l~~l 299 (464)
.|++|+|||+++++++.++..+ ...+.+++|+|.....+++++.|+ +|++||++++ +++..+
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~ 257 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL 257 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe
Confidence 6789999999999999999854 567899999995334667788998 9999999997 678888
Q ss_pred c-cCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccc
Q 012410 300 R-TEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQ 374 (464)
Q Consensus 300 ~-gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg-~~LaSgs~~~~~~~ 374 (464)
. +|...|.+++|+| ++++|++++ |++|+|||+ +++++.++.+|..+ |.+++|+||+ ++|++++.
T Consensus 258 ~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~s~~~------ 326 (416)
T 2pm9_A 258 NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW-----CFKTKFAPEAPDLFACASF------ 326 (416)
T ss_dssp CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC-----CCCEEECTTCTTEEEECCS------
T ss_pred ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc-----eEEEEECCCCCCEEEEEec------
Confidence 8 9999999999999 999999999 999999999 69999999999988 7899999999 89999986
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCC--CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATN--CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS 452 (464)
|++|+|||+.++++........ .......+...+..++...+.....+ ....-....|.+++|||||+.||+
T Consensus 327 -----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 327 -----DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp -----SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECB
T ss_pred -----CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEE
Confidence 9999999999887654432200 00000011111111111111111222 111123457889999999999999
Q ss_pred eeCCCcEEeccC
Q 012410 453 GNRHGLVHVWSN 464 (464)
Q Consensus 453 gs~DgtVrlWd~ 464 (464)
|+.|++|+||+.
T Consensus 401 ~~~d~~v~~w~~ 412 (416)
T 2pm9_A 401 TPDGKGVSITNP 412 (416)
T ss_dssp CTTSSCBCCBCC
T ss_pred eCCCCeEEEEEe
Confidence 999999999984
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-43 Score=348.63 Aligned_cols=267 Identities=14% Similarity=0.144 Sum_probs=233.2
Q ss_pred cceEEEEec------cceeehhccCCeEEeeecccccEe--eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccce
Q 012410 89 TKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRI--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (464)
Q Consensus 89 s~v~~~~~a------g~~l~~l~~~g~~~~~~~~~g~~l--~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~ 160 (464)
..|..+.+. +++|++++.||++++|+..+++.. ..+ .+|...|.++.|+|++..+++ ++.|
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~~~~l~s----~s~D------ 101 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHTLPIAAS----SSLD------ 101 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSSSSEEEE----EETT------
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCCCCEEEE----EeCC------
Confidence 345555543 569999999999999997776643 346 568889999999999999999 4456
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS- 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s- 237 (464)
++++|||+.+|++...+..+. ..+..++|+ |||++|++|+.|++|++||+++++.++++. ...|.+++|+|+
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~----~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGP----VDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 176 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCT----TCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS
T ss_pred CcEEEEECCCCCEEEEEeCCC----ccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC
Confidence 799999999998754333222 223379997 999999999999999999999999998876 467999999984
Q ss_pred -------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEE
Q 012410 238 -------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 310 (464)
Q Consensus 238 -------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~ 310 (464)
.|++|+|||+++|+++.++++|...+.+++|+| ++..|++++.|++|+|||+++++++.++.+|...|.+++
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 689999999999999999998778899999999 466777789999999999999999999999999999999
Q ss_pred EcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 311 FLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
|+|||++|+|++ |++|+|||+ +++++++|.+|... |++++|+|||++|+|++. |++|+|||.
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~-----v~~v~~s~~g~~l~s~~~-----------d~~i~vwd~ 319 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ-----VWGVKYNGNGSKIVSVGD-----------DQEIHIYDC 319 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TCCEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc-----EEEEEECCCCCEEEEEeC-----------CCeEEEEeC
Confidence 999999999999 999999999 69999999999987 899999999999999987 999999996
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5e-42 Score=326.93 Aligned_cols=310 Identities=11% Similarity=0.063 Sum_probs=255.0
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++..+.++ |.++++....+.+..|........... ..|.+.|.+++|+|+|+.|++ ++ + ++++||
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~----~~-d------g~i~iw 77 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNPTRHVYT----GG-K------GCVKVW 77 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSSSSEEEE----EC-B------SEEEEE
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecCCcEEEE----cC-C------CeEEEE
Confidence 344445444 888887777776666654444444443 358999999999999999988 44 4 699999
Q ss_pred EeccCCCCCcccceee-ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe--EEEEec--CCCEeEEEEeCC----
Q 012410 167 YIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIRSS---- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~--~l~tl~--~~~V~~Vafs~s---- 237 (464)
++.+++.......+.. .+...+.+++|+ |||+.|++++.|++|++||+.+++ ....+. ...|..++|+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 78 DISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156 (337)
T ss_dssp ETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred ECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEE
Confidence 9998876544333221 123445589997 899999999999999999999988 445554 567999999884
Q ss_pred ----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 238 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
.|+.|++||+++++++.++..+...+..++|+| ++..+++++.|++|++||+++++++..+. |...+.+++|+|
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~ 234 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP 234 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT
T ss_pred EEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECC
Confidence 678999999999999999997778899999999 46678888999999999999999988875 567899999999
Q ss_pred CCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 314 ENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+|++|++++ |++|++||+.......+.+|... |.+++|+|||++|++++. ||+|++||+.+++
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~-----------dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGA 298 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCEEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEETTTCC
T ss_pred CCCEEEEEcCCCcEEEEECCCCCeEEEcCCccc-----eeEEEECCCCCEEEEecC-----------CCcEEEEECCCCe
Confidence 999999999 99999999954445678899887 899999999999999987 9999999999999
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
++..+ .|.. .|.+++|+|||+.|++|+.||+|++|+.
T Consensus 299 ~~~~~-~~~~----------------------------------~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 299 SIFQS-KESS----------------------------------SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEE-ECSS----------------------------------CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEe-cCCC----------------------------------cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 98665 4554 8999999999999999999999999983
No 27
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-44 Score=359.99 Aligned_cols=324 Identities=14% Similarity=0.098 Sum_probs=245.2
Q ss_pred eeecccccEeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEecc---CCCCCcccceeeccccC
Q 012410 112 AFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR---GKPDSGFALFESESLKW 187 (464)
Q Consensus 112 ~~~~~~g~~l~~ln~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~---G~~~~~~~l~~~~~~~~ 187 (464)
.|+ .+|+.+..+..+|...|.+++|+| +|+.|+++ +.| ++++||++.+ ++.... .++..+...
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~----s~d------g~v~vwd~~~~~~~~~~~~--~~~~~h~~~ 113 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITG----SDQ------GVIKIWNLKEIIVGEVYSS--SLTYDCSST 113 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEE----ETT------SEEEEEEHHHHHTTCCCSC--SEEEECSSC
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEe----cCC------ceEEEeECcccccCcccce--eeeccCCCC
Confidence 487 889999999777999999999999 99999994 456 7999999987 663321 122123355
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCC---CCeEEEEecCCCEeEEEEe----------------C--------CCce
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDKHVQEIKIR----------------S--------SSHV 240 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~---tg~~l~tl~~~~V~~Vafs----------------~--------s~d~ 240 (464)
+.+|+|+ |+|+.|++|+.|++|+|||+. +++++..+..+.|..+.|+ | +.|+
T Consensus 114 v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 192 (437)
T 3gre_A 114 VTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192 (437)
T ss_dssp EEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred EEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence 6699997 899999999999999999994 7777766554455555543 2 3679
Q ss_pred eEEEEEcCCCcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-cCCCceEEE----EEcC
Q 012410 241 PLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAF----IFLY 313 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv----~Fsp 313 (464)
+|++||+++++++.++.. |...+.+++|+|. +..+++++.|++|+|||+++++++.++. +|...|.++ +|+|
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 999999999999999996 6678999999984 6677789999999999999999999886 777899999 5556
Q ss_pred CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcC---------------------CCCeeEEEECCCCCEEEEEecCC
Q 012410 314 ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP---------------------DCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~---------------------~~~v~svafSpDg~~LaSgs~~~ 370 (464)
++++|++++ |++|+|||+ +|+++.+|.+|..++. ...|++++|+ ++++|++|+.
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~-- 348 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA-- 348 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG--
T ss_pred CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC--
Confidence 899999999 999999999 6999999998864321 1127788999 7899999987
Q ss_pred CccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccc---cCCCCCCccccccccc-cccccccccccCEEEEEEcCC
Q 012410 371 PEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE---LGSSSTGKSKKLNKSS-YIRSTVGEALEDITSLFYDEE 446 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~l~~V~slafspD 446 (464)
|++|++||+.+++|+.++.+|+........ ........ ...+... ........+-..|++|+|+|+
T Consensus 349 ---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 349 ---------TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLL-RKMKRTSTHSVDDSLYHHDIINSISTCEV 418 (437)
T ss_dssp ---------GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEE-EECC-------------CCCEEEEEEEES
T ss_pred ---------CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEE-EecccccccccCcccccccceeeEeeecc
Confidence 999999999999999999998641111000 00000000 0000000 000111124558999999999
Q ss_pred --CCEEEEeeCCCcEEecc
Q 012410 447 --RNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 447 --g~~LaSgs~DgtVrlWd 463 (464)
+..|+||+.||+|+||+
T Consensus 419 ~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 419 DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSEEEEEEETTSCEEEEC
T ss_pred CCceEEEEEcCCceEEEeC
Confidence 88999999999999996
No 28
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-42 Score=392.62 Aligned_cols=354 Identities=14% Similarity=0.177 Sum_probs=298.1
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|..+.+. |++|++++.+|.+++|+..+++.+..+. +|...|.+++|+|+|+.|+++| .| ++++||
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~----~d------~~v~vw 684 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCS----AD------KKVKIW 684 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----TT------SEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEe----CC------CeEEEE
Confidence 455556665 9999999999999999999999999995 5889999999999999999944 55 699999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCC--CCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS----- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p--dGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s----- 237 (464)
|+.+|++...+..+. ..+..++|+ | ++.+|++|+.|++|++||+.+++++.++. ...|.+++|+|+
T Consensus 685 d~~~~~~~~~~~~~~----~~v~~~~~~-~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHS----EQVNCCHFT-NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp ETTTCCEEEEEECCS----SCEEEEEEC-SSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred ECCCCceEEEEcCCC----CcEEEEEEe-cCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE
Confidence 999999865544433 445589997 6 66799999999999999999999999886 568999999984
Q ss_pred ---CceeEEEEEcCCCcEEEEEe-------------------------------------------------------eC
Q 012410 238 ---SHVPLKILSIEDGTVLKVFY-------------------------------------------------------HL 259 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~l~tl~-------------------------------------------------------~~ 259 (464)
.|++|++||+.+++++.++. ++
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 67899999999888776653 33
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-------
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF------- 331 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~------- 331 (464)
...+.+++|+| ++..+++++.|++|++||+.+++++..+.+|...|.+++|+|||+.|+|++ |++|++||+
T Consensus 840 ~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~ 918 (1249)
T 3sfz_A 840 HSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 918 (1249)
T ss_dssp SSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCC
T ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceee
Confidence 45668899988 466777788999999999999999999999999999999999999999999 999999873
Q ss_pred -------------------------------------------------------------------------CCceEEE
Q 012410 332 -------------------------------------------------------------------------RGELVTS 338 (464)
Q Consensus 332 -------------------------------------------------------------------------~Ge~l~t 338 (464)
+|+++.+
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~ 998 (1249)
T 3sfz_A 919 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 998 (1249)
T ss_dssp SSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEE
T ss_pred eecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeee
Confidence 2556677
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCC----------------------------Cccc-cccCCCCeEEEEeCC
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAE----------------------------PEDQ-WMEGSAGSINVSSIL 389 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~----------------------------~~~~-~~~s~DgtIklWdi~ 389 (464)
+.+|... |.+++|+|||++|++++... ++.. .+.+.|++|++||+.
T Consensus 999 ~~~h~~~-----v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 999 GVGHKKA-----VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp CCCCSSC-----CCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred cccCCCc-----eEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 8889887 78999999999999997521 0000 345678899999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc-c-------cccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG-E-------ALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
+|+++.++.+|...+....+++++..+++...+++..+|+... + +-..|++++|||||+.||||+.||+|+|
T Consensus 1074 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153 (1249)
T ss_dssp TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCE
T ss_pred CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 9999999999998777778889999999999999888887543 2 2337999999999999999999999999
Q ss_pred ccC
Q 012410 462 WSN 464 (464)
Q Consensus 462 Wd~ 464 (464)
||.
T Consensus 1154 wd~ 1156 (1249)
T 3sfz_A 1154 WNV 1156 (1249)
T ss_dssp EES
T ss_pred EEC
Confidence 983
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.5e-43 Score=351.14 Aligned_cols=274 Identities=12% Similarity=0.100 Sum_probs=216.9
Q ss_pred ceEEEEec--cceeehhccCCeEEeeeccc----------ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcc
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRET----------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~----------g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~ 157 (464)
.|..+.+. |.+|++.+ ++++++|+... .+..+.....+...|.+|+|+|++ .|++ +++|
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~----~s~d--- 102 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILV----ASDS--- 102 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEE----EETT---
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEE----EECC---
Confidence 45566666 88888776 77888886211 111111112345669999999997 4666 3456
Q ss_pred cceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEe
Q 012410 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIR 235 (464)
Q Consensus 158 L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs 235 (464)
++|+|||+.+|+..........+|...+.+|+|+ |||++|++|+.|++|||||++++++++++. .+.|.+++|+
T Consensus 103 ---g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~ 178 (344)
T 4gqb_B 103 ---GAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS 178 (344)
T ss_dssp ---SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ---CEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence 7999999999998654332222334556689997 899999999999999999999999999987 5789999998
Q ss_pred C---------CCceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC
Q 012410 236 S---------SSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 304 (464)
Q Consensus 236 ~---------s~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~ 304 (464)
| +.|++|+|||+++|+++.++. ++.+.+.+++|+|.++..+++++.|++|+|||+++++++.++.+|..
T Consensus 179 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~ 258 (344)
T 4gqb_B 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ 258 (344)
T ss_dssp SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS
T ss_pred CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC
Confidence 7 378999999999999999886 33456789999996555566689999999999999999999999999
Q ss_pred ceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCC
Q 012410 305 TPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 305 ~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~D 380 (464)
.|++++|+||| ++|||++ |++|+|||+ +|+++ .+.+|..+ |++|+|||||+ +|+|+|. |
T Consensus 259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~-----V~~v~~sp~~~~llas~s~-----------D 321 (344)
T 4gqb_B 259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF-----VRDATWSPLNHSLLTTVGW-----------D 321 (344)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC-----EEEEEECSSSTTEEEEEET-----------T
T ss_pred CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC-----EEEEEEeCCCCeEEEEEcC-----------C
Confidence 99999999998 5899999 999999999 57765 57899998 89999999986 6778886 9
Q ss_pred CeEEEEeCCCCeE
Q 012410 381 GSINVSSILTGKC 393 (464)
Q Consensus 381 gtIklWdi~tG~c 393 (464)
++|++|++.++..
T Consensus 322 ~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 322 HQVVHHVVPTEPL 334 (344)
T ss_dssp SCEEEEECCC---
T ss_pred CeEEEEECCCCCC
Confidence 9999999987543
No 30
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.3e-42 Score=337.99 Aligned_cols=269 Identities=9% Similarity=0.143 Sum_probs=230.8
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|..+.+. |++|++++.||.+++||..+++.+..+.. |...|.+++|+|+|+.|+++ +.| ++++||
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~----~~d------~~v~iw 124 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACG----GLD------NICSIY 124 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEE----ETT------CEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEE----eCC------CeEEEE
Confidence 466666666 88999999999999999999999999954 88889999999999999994 456 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
++.+++........-..+.+.+..++|+ |+++ |++++.|++|+|||+++++++.++. ...|.+++|+|+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEE-ETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEEC-CCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9987653211100001123444579997 6875 7889999999999999999999886 467999999884
Q ss_pred -CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC--CCceEEEEEcCC
Q 012410 238 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE--FMTPSAFIFLYE 314 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh--~~~v~sv~Fspd 314 (464)
.|++|+|||+.+|+++.++.+|...+.+|+|+| ++..+++++.|++|+|||+++++++..+..+ ...|.+++|+|+
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence 689999999999999999998778899999999 4677888999999999999999998877643 347999999999
Q ss_pred CcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 315 NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
|++|++++ |++|+|||+ +++++.+|.+|..+ |++++|+|||++|||||. |++|+|||
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~s~-----------D~~i~iWd 340 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSW-----------DSFLKIWN 340 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEEEECTTSSCEEEEET-----------TSCEEEEC
T ss_pred CCEEEEECCCCeEEEEEcccCcEeeEeecCCCc-----EEEEEEcCCCCEEEEEcC-----------CccEEecC
Confidence 99999999 999999999 79999999999998 899999999999999997 99999997
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-42 Score=328.90 Aligned_cols=286 Identities=13% Similarity=0.139 Sum_probs=237.4
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L 201 (464)
..+ .+|...|.+++|+|+|+.|+++ +.| ++++||++.+|+....+..+. ..+.+++|+ |||++|
T Consensus 26 ~~l-~~h~~~v~~~~~s~~~~~l~~~----~~d------g~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~-~~~~~l 89 (369)
T 3zwl_B 26 IKL-TGHERPLTQVKYNKEGDLLFSC----SKD------SSASVWYSLNGERLGTLDGHT----GTIWSIDVD-CFTKYC 89 (369)
T ss_dssp EEE-ECCSSCEEEEEECTTSCEEEEE----ESS------SCEEEEETTTCCEEEEECCCS----SCEEEEEEC-TTSSEE
T ss_pred EEE-EEeeceEEEEEEcCCCCEEEEE----eCC------CEEEEEeCCCchhhhhhhhcC----CcEEEEEEc-CCCCEE
Confidence 346 4588999999999999999994 445 699999999998765444443 344589997 899999
Q ss_pred EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------Cc-----eeEEEEEcCCCcE-----------EEEE
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SH-----VPLKILSIEDGTV-----------LKVF 256 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d-----~tIklWdi~tG~~-----------l~tl 256 (464)
++++.|++|+|||+.+++++.++. ...|.+++|+|+ .+ +.|++||+.+++. +..+
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 999999999999999999998876 678999999984 33 8999999988753 3334
Q ss_pred eeCCc--ceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-
Q 012410 257 YHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 257 ~~~~~--~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~- 331 (464)
..+.+ .+..++|+|+ +..+++++.|++|++||+++ ++++..+.+|...|.+++|+|++++|++++ |++|++||+
T Consensus 170 ~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp ECCTTCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCcCccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 43333 7899999994 56777789999999999999 889999999999999999999999999999 999999999
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc---cccCCCCeEEEEeCCCCeEEEEEccCCCCCCccc
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ---WMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 408 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~---~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~ 408 (464)
+++++.++. |... +..++|+|+|++|++++......- .......+|++||+.+++++.++.+|..
T Consensus 249 ~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------ 316 (369)
T 3zwl_B 249 TLQVLKKYE-TDCP-----LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG------ 316 (369)
T ss_dssp TCCEEEEEE-CSSC-----EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS------
T ss_pred CCceeeeec-CCCC-----ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC------
Confidence 699999998 4444 889999999999999986100000 0000011899999999999999999987
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+|||+.||||+.||+|+||+.
T Consensus 317 ----------------------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 317 ----------------------------PLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ----------------------------CEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred ----------------------------cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 8999999999999999999999999983
No 32
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.7e-43 Score=349.38 Aligned_cols=276 Identities=9% Similarity=0.084 Sum_probs=213.6
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee---ec---cccCceEEEEeCCCCcEEEE
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE---SE---SLKWPGFVEFDDVNGKVLTY 203 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~---~~---~~~~~~~VaFs~pdGk~LaS 203 (464)
..|+||+|+|||+.|++.+...+. ++.+ ..++||++..+.......+.. .. +-..+.+++|+ +..+++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~--sGi~-N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~ 88 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGN--NGIP-NKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILV 88 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSS--SSCC-EEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEE
T ss_pred CCEEEEEEeCCCcEEEEECCCccc--cCCC-CEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEE
Confidence 459999999999999995522110 0000 479999997766532111111 01 11233356654 455554
Q ss_pred -----------ecCCCcEEEEeCCCCeEE----EEec-------CCCEeEEEEeCC----------CceeEEEEEcCCCc
Q 012410 204 -----------SAQDSIYKVFDLKNYTML----YSIS-------DKHVQEIKIRSS----------SHVPLKILSIEDGT 251 (464)
Q Consensus 204 -----------gs~D~tiKlWdl~tg~~l----~tl~-------~~~V~~Vafs~s----------~d~tIklWdi~tG~ 251 (464)
++.|+++|+|++.+++.. .... +..|+.|+|||+ .|++|||||+++++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 467899999998765422 2221 245899999984 57899999999999
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE--EcccCCCceEEEEEcCCCcEEEEEe-CC----
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NR---- 324 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~--~l~gh~~~v~sv~FspdgqllaS~s-D~---- 324 (464)
++.++.|+ +.|.+|+|+|+ +++++.+.|+++++|+..+++++. +..+|...|.+++|+|||+++++++ |+
T Consensus 169 ~~~~~~~~-~~V~~v~fspd--g~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 169 EKFEIETR-GEVKDLHFSTD--GKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEEEECS-SCCCEEEECTT--SSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred EEEEeCCC-CceEEEEEccC--CceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 99999865 78999999994 555554446677888888888764 5678989999999999999999999 87
Q ss_pred eEEEEeC-CCce----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-c
Q 012410 325 TVAVWNF-RGEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-N 398 (464)
Q Consensus 325 TIklWd~-~Ge~----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~ 398 (464)
+|++||+ .++. ...+.+|... |++++|||||++||+||. |++|+|||+.+|+|++++ +
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~-----V~~~~~Spdg~~lasgs~-----------D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNRFKG-----ITSMDVDMKGELAVLASN-----------DNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCSC-----EEEEEECTTSCEEEEEET-----------TSCEEEEETTTTEEEEEETT
T ss_pred EEeecccccceecceeeeeecCCCCC-----eEeEEECCCCCceEEEcC-----------CCEEEEEECCCCcEEEEecC
Confidence 7999998 4543 4578899988 899999999999999997 999999999999999985 7
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
||.. .|++|+|||||+.|||||.|+||||||.
T Consensus 310 gH~~----------------------------------~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 310 AHSF----------------------------------AITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp SSSS----------------------------------CEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred cccC----------------------------------CEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 9997 9999999999999999999999999984
No 33
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-44 Score=382.94 Aligned_cols=304 Identities=14% Similarity=0.052 Sum_probs=220.5
Q ss_pred ceeehhccCCeEEeeecccccEe----eEeecCCCceEEEEEEeeC------CCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 99 DIVFALAHSGVCAAFSRETNRRI----CFLNVSPDEVIRSLFYNKN------NDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l----~~ln~~~~~~i~Sv~fs~~------g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
+++++.+.+|++++|++.+++.. ..+ .+|...|++|+|+|+ +..||++| .| ++++||++
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-~~~~~~V~~v~wsp~~~~~~~~~~LAs~s----~D------gtvrlWd~ 242 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-VHSFGEVWDLKWHEGCHAPHLVGCLSFVS----QE------GTINFLEI 242 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEE-EECCCSEEEEEECSSCCCSSSSCEEEEEE----TT------SCEEEEEC
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEE-EecCCcEEEEEECCCCCCCCCCceEEEEe----cC------CeEEEEEc
Confidence 36777889999999998887753 234 346677999999997 57899854 55 79999999
Q ss_pred ccCCCCCc------ccceee-ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEEe--cCCCEeEE--EEeC
Q 012410 169 RRGKPDSG------FALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSI--SDKHVQEI--KIRS 236 (464)
Q Consensus 169 ~~G~~~~~------~~l~~~-~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~tl--~~~~V~~V--afs~ 236 (464)
..++.... .+.++. .+...+.+|+|+ |++ .||+|+.|++|+|||++++++ +.++ +...|.+| +|+|
T Consensus 243 ~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s-~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 243 IDNATDVHVFKMCEKPSLTLSLADSLITTFDFL-SPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp CCCSSSSSEEECCCSCSEEECCTTTCEEEEEES-SSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred CCCccccccceeecCceEEEEcCCCCEEEEEec-CCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence 88864311 111111 122445589997 554 899999999999999998754 3344 46789999 5665
Q ss_pred ---------CCceeEEEEEcCCCcEEEEEeeCCc--ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 237 ---------SSHVPLKILSIEDGTVLKVFYHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 237 ---------s~d~tIklWdi~tG~~l~tl~~~~~--~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
+.|++|||||+.++++++++.++.. .+.+|+|+|+ +..+++++.|++|||||+++++|+.++.+|...
T Consensus 321 ~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~ 399 (524)
T 2j04_B 321 FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETT 399 (524)
T ss_dssp TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEEEECSSC
T ss_pred CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC-cCeEEEeCCCCcEEEEECcccccceeeecCCCc
Confidence 3689999999999999998885433 4789999994 567777889999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 012410 306 PSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
|++|+|||+|++|||++ |++|+|||..++++++++++..|+....|++++|+|||+.+.. +..++
T Consensus 400 V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--------------~~~~~ 465 (524)
T 2j04_B 400 ITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--------------DSSYE 465 (524)
T ss_dssp EEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--------------CCCCC
T ss_pred eEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--------------cCCce
Confidence 99999999999999999 9999999997666555543333332223789999999996632 23455
Q ss_pred EEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC---EEEEeeCCCcEE
Q 012410 385 VSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN---EIYTGNRHGLVH 460 (464)
Q Consensus 385 lWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~---~LaSgs~DgtVr 460 (464)
+|+.. +|+|+.+|.+|.. .|++|+||||++ .||+|+.||+||
T Consensus 466 ~~~~~~~g~~~~~l~gh~~----------------------------------~V~~Vafsp~~~~~~~lAsg~~~g~vr 511 (524)
T 2j04_B 466 VYPLTVNDVSKAKIDAHGI----------------------------------NITCTKWNETSAGGKCYAFSNSAGLLT 511 (524)
T ss_dssp CCC-------------CCC----------------------------------SCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred ecccccCCcceeeecCCCc----------------------------------eEEEEECCCCCCccHHHHhhccCceEE
Confidence 66543 7999999999987 899999999965 999999999999
Q ss_pred eccC
Q 012410 461 VWSN 464 (464)
Q Consensus 461 lWd~ 464 (464)
||+.
T Consensus 512 lw~l 515 (524)
T 2j04_B 512 LEYL 515 (524)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9974
No 34
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-41 Score=352.41 Aligned_cols=311 Identities=12% Similarity=0.115 Sum_probs=257.0
Q ss_pred cceEEEEec--cc-eeehhccCCeEEeeecccccEeeEeecCCCc---eEEEEEEeeC-CCEEEEEEeecCCCCccccee
Q 012410 89 TKVIEIVAA--RD-IVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKN-NDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 89 s~v~~~~~a--g~-~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~---~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ 161 (464)
..|..+.+. ++ ++++.+.+|.+++|+..+++.+..+. .|.. .|.++.|+|+ |+.|++++ .+ +
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~----~d------g 229 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVG----SD------R 229 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEE----TT------C
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCCceEEEEEECCCCCCEEEEEe----CC------C
Confidence 455666666 44 89999999999999999999999995 4777 8999999999 99999844 45 6
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC------CCEeEEEEe
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KHVQEIKIR 235 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~------~~V~~Vafs 235 (464)
++++|++.+|++...+......+...+..++|+ +|++|++++.|++|++||+.+++++.++.. ..+..+.|+
T Consensus 230 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (615)
T 1pgu_A 230 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 307 (615)
T ss_dssp CEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred eEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC
Confidence 999999999987644310000122445589996 999999999999999999999999988763 457777774
Q ss_pred C-------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc--------------------------------C----
Q 012410 236 S-------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--------------------------------F---- 272 (464)
Q Consensus 236 ~-------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~--------------------------------~---- 272 (464)
. +.|+.|++||+.+++++.++.+|...+.+++| |+ .
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l 386 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY 386 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCC
T ss_pred CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEE
Confidence 3 36788999999888888888755444444444 21 0
Q ss_pred ---------------------------------------------------------------------CCeEEEEeC-C
Q 012410 273 ---------------------------------------------------------------------NEKLLVKQE-N 282 (464)
Q Consensus 273 ---------------------------------------------------------------------~~~lla~s~-D 282 (464)
+..+++++. |
T Consensus 387 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d 466 (615)
T 1pgu_A 387 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG 466 (615)
T ss_dssp EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTT
T ss_pred EEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCC
Confidence 233444555 7
Q ss_pred CeEEEEECCCCcEE-EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEecc-CCCCcCCCCeeEEEECC
Q 012410 283 ENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFED-HLLWHPDCNTNNIYITS 358 (464)
Q Consensus 283 ~tIkIWDv~tg~~l-~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~g-H~~~~~~~~v~svafSp 358 (464)
++|++||+.++++. ..+.+|...|.+++|+|||++|++++ |++|+|||+ +|+++.++.+ |... |++++|+|
T Consensus 467 ~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~-----v~~~~~sp 541 (615)
T 1pgu_A 467 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK-----INAISWKP 541 (615)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSC-----EEEEEECC
T ss_pred CeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCc-----eeEEEEcC
Confidence 88888888777766 77889999999999999999999999 999999999 7999999999 9887 89999999
Q ss_pred ----------CCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 359 ----------DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 359 ----------Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
||++||+++. ||+|+|||+.++ +++.++.+|..
T Consensus 542 ~~~~~~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~h~~------------------------- 585 (615)
T 1pgu_A 542 AEKGANEEEIEEDLVATGSL-----------DTNIFIYSVKRPMKIIKALNAHKD------------------------- 585 (615)
T ss_dssp CC------CCSCCEEEEEET-----------TSCEEEEESSCTTCCEEETTSSTT-------------------------
T ss_pred ccccccccccCCCEEEEEcC-----------CCcEEEEECCCCceechhhhcCcc-------------------------
Confidence 9999999987 999999999998 89999999986
Q ss_pred cccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 428 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 428 ~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|+|||+ |+||+.||+|++|+.
T Consensus 586 ---------~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 586 ---------GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp ---------CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred ---------ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 899999999999 999999999999983
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-42 Score=346.17 Aligned_cols=273 Identities=11% Similarity=0.109 Sum_probs=216.4
Q ss_pred ceEEEEec--cceeehhcc------CCeEEeeecccccEeeE---eecCCCceEEEEEEeeCCCEEEEEEeecCCCCccc
Q 012410 90 KVIEIVAA--RDIVFALAH------SGVCAAFSRETNRRICF---LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~------~g~~~~~~~~~g~~l~~---ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L 158 (464)
.|..+-++ |.+|++++. +|.+++|+..++.+... ....|...|.+|+|+|+|..|+. | .+
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~-s----~d---- 114 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVA-S----DS---- 114 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEE-E----TT----
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEE-E----CC----
Confidence 46666666 999999987 67899998877764332 22457778999999999975543 2 34
Q ss_pred ceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC
Q 012410 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS 236 (464)
Q Consensus 159 ~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~ 236 (464)
++|+|||+.+|+.......-..++...+.+|+|+ |||++|++|+.|++|+|||+++++++.++. ...|.+|+|+|
T Consensus 115 --g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 115 --GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp --SCEEEC--------CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred --CEEEEeeccccceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 5999999999987544332222233455689997 899999999999999999999999999887 56899999987
Q ss_pred C---------CceeEEEEEcCCCcEEEEEee--CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 237 S---------SHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 237 s---------~d~tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
+ .|++|+|||+++|+++..+.. +...+.+|+|+|+.+..+++++.|++|+|||++++++++++.+|...
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~ 271 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN 271 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee
Confidence 3 678999999999999887763 33457999999964445666889999999999999999999999999
Q ss_pred eEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCC
Q 012410 306 PSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 306 v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|.+++|+|++ ++|||++ |++|+|||+ +|++++++ +|..+ |++|+||| |+++|||+|. ||
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~-----V~~vafsP~d~~~l~s~s~-----------Dg 334 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF-----VTGVAWSPLDHSKFTTVGW-----------DH 334 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC-----EEEEEECSSSTTEEEEEET-----------TS
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC-----EEEEEEeCCCCCEEEEEcC-----------CC
Confidence 9999999997 5799999 999999999 69888766 89988 89999999 8999999987 99
Q ss_pred eEEEEeCCCC
Q 012410 382 SINVSSILTG 391 (464)
Q Consensus 382 tIklWdi~tG 391 (464)
+|+|||+.+.
T Consensus 335 ~v~iW~~~~~ 344 (357)
T 4g56_B 335 KVLHHHLPSE 344 (357)
T ss_dssp CEEEEECC--
T ss_pred eEEEEECCCC
Confidence 9999999653
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.6e-42 Score=339.14 Aligned_cols=295 Identities=13% Similarity=0.092 Sum_probs=232.6
Q ss_pred ccccEeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEe
Q 012410 116 ETNRRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (464)
Q Consensus 116 ~~g~~l~~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs 194 (464)
.+.+.+..+ .+|...|.++.|+|+| +.|++++ .| ++++||++.+++....+... .+...+.+++|+
T Consensus 61 ~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~----~d------g~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~~ 127 (383)
T 3ei3_B 61 KSYKLHRTA-SPFDRRVTSLEWHPTHPTTVAVGS----KG------GDIILWDYDVQNKTSFIQGM--GPGDAITGMKFN 127 (383)
T ss_dssp TTCEEEEEE-CCCSSCEEEEEECSSCTTEEEEEE----BT------SCEEEEETTSTTCEEEECCC--STTCBEEEEEEE
T ss_pred cccceEEec-cCCCCCEEEEEECCCCCCEEEEEc----CC------CeEEEEeCCCcccceeeecC--CcCCceeEEEeC
Confidence 344455566 4588889999999999 8999844 45 69999999988875333221 123445589998
Q ss_pred CC-CCcEEEEecCCCcEEEEeCCCCeEEEEec-----CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCC
Q 012410 195 DV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 195 ~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~-----~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
| ++++|++++.|++|+|||+.+ .++..+. ...|.+++|+|+ .|++|++||+ +|+++.++..|.
T Consensus 128 -~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~ 204 (383)
T 3ei3_B 128 -QFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK 204 (383)
T ss_dssp -TTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS
T ss_pred -CCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC
Confidence 7 889999999999999999986 5555554 256999999984 6799999999 699999999777
Q ss_pred cceeeEEEEccCCC-eEEEEeCCCeEEEEECCC----CcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-C
Q 012410 261 HRNKKVDFIEQFNE-KLLVKQENENLQILDVRN----AELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-R 332 (464)
Q Consensus 261 ~~~~~V~F~~~~~~-~lla~s~D~tIkIWDv~t----g~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~-~ 332 (464)
..+.+|+|+|. +. .+++++.|++|+|||+++ ++++..+ +|...|.+++|+| +|++|++++ |++|+|||+ +
T Consensus 205 ~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 205 AKVTHAEFNPR-CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp SCEEEEEECSS-CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred CcEEEEEECCC-CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 89999999995 44 677789999999999998 7888887 6889999999999 999999999 999999999 6
Q ss_pred CceEEEeccCCCCcCC--CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 333 GELVTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~--~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
++++.++.+|...... ..+. +.|+|++..++.+.. |+.+.+++.|++|+|||+.+|+++.++.+|...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s--~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~------- 352 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRY--PDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAA------- 352 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECB--CCTTTCTTCCCCEEEEETTTCCEEEEECBTTBC-------
T ss_pred CccccccccccccccccccceE-EeccCCCCceEEEec--CCcccccCCCCeEEEEecCCCceeeeecCCCCC-------
Confidence 9999999988643110 0122 355555555554332 222224456999999999999999999986420
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
..|..++|+|||+.||+|+ |++|+|||.
T Consensus 353 -------------------------~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 353 -------------------------GIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp -------------------------SCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred -------------------------ceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 1567789999999999998 999999984
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-42 Score=333.87 Aligned_cols=280 Identities=11% Similarity=0.157 Sum_probs=235.7
Q ss_pred eEeecCCCceEEEEEEeeC---CCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec-cccCceEEEEeCCC
Q 012410 122 CFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDDVN 197 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~---g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-~~~~~~~VaFs~pd 197 (464)
..+..+|...|.+++|+|+ |+.++.++ ++++ .++||++.+++....+..+... +...+.+++|+ |+
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~--~~~~-------~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~ 80 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFAT--VGSN-------RVTLYECHSQGEIRLLQSYVDADADENFYTCAWT-YD 80 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEE--EETT-------EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEE-EC
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEE--CCCC-------EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEec-cC
Confidence 3555679999999999984 55444433 4444 8999999988876544444321 22334589998 78
Q ss_pred ----CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC-C--------CceeEEEEEcCCCcEEEEE---eeC
Q 012410 198 ----GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS-S--------SHVPLKILSIEDGTVLKVF---YHL 259 (464)
Q Consensus 198 ----Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~-s--------~d~tIklWdi~tG~~l~tl---~~~ 259 (464)
|++|++|+.|++|+|||+.+++++.++. ...|.+++|+| + .|++|+|||+++|+++..+ ..+
T Consensus 81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp TTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred CCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 7899999999999999999999998886 57899999988 3 6889999999999999998 556
Q ss_pred CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc----------------------------CCCceEEEEE
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----------------------------EFMTPSAFIF 311 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g----------------------------h~~~v~sv~F 311 (464)
...+.+++|+| ++..+++++.|++|++||+++++++..+.. |...|.+++|
T Consensus 161 ~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 161 RDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred cCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 68899999999 467888899999999999999987655544 9999999999
Q ss_pred cCCCcEEEEEe-CCeEEEEeC-CCce--------------EEEeccCCCCcCCCCeeEEEECCC--CCEEEEEecCCCcc
Q 012410 312 LYENQLFLTFR-NRTVAVWNF-RGEL--------------VTSFEDHLLWHPDCNTNNIYITSD--QDLIISYCKAEPED 373 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~-~Ge~--------------l~tl~gH~~~~~~~~v~svafSpD--g~~LaSgs~~~~~~ 373 (464)
+ +++|++++ |++|++||+ ++++ +.++.+|... |+.++|+|| |++||+|+.
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~~l~~~~~----- 307 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD-----IWYMRFSMDFWQKMLALGNQ----- 307 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC-----SSCCCCEECTTSSEEEEECT-----
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc-----EEEEEEcCCCCCcEEEEEec-----
Confidence 9 77999999 999999998 5644 8999999987 788999999 999999986
Q ss_pred ccccCCCCeEEEEeCCCCeE----EEEEccCC--CCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 012410 374 QWMEGSAGSINVSSILTGKC----LAKINATN--CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 447 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG~c----l~tl~gh~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg 447 (464)
||+|+|||+.++++ +.++.+|. . .|++++|+|||
T Consensus 308 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~ 347 (366)
T 3k26_A 308 ------VGKLYVWDLEVEDPHKAKCTTLTHHKCGA----------------------------------AIRQTSFSRDS 347 (366)
T ss_dssp ------TSCEEEEECCSSSGGGCEEEEECCTTCCS----------------------------------CEEEEEECTTS
T ss_pred ------CCcEEEEECCCCCCccccceEEcccccCC----------------------------------ceEEEEeCCCC
Confidence 99999999999874 44888883 3 89999999999
Q ss_pred CEEEEeeCCCcEEeccC
Q 012410 448 NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 448 ~~LaSgs~DgtVrlWd~ 464 (464)
+.|++|+.||+|+|||.
T Consensus 348 ~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 348 SILIAVCDDASIWRWDR 364 (366)
T ss_dssp SEEEEEETTSEEEEEEC
T ss_pred CeEEEEeCCCEEEEEEe
Confidence 99999999999999984
No 38
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-41 Score=316.18 Aligned_cols=275 Identities=13% Similarity=0.182 Sum_probs=236.8
Q ss_pred ccc-cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEe
Q 012410 116 ETN-RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (464)
Q Consensus 116 ~~g-~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs 194 (464)
.++ +.+..+ .+|...|.+++| |+|+.|+++| .| ++++||++.+++....+..+ ...+.+++|+
T Consensus 5 ~~~~~~~~~l-~~h~~~v~~~~~-~~~~~l~s~~----~d------g~v~vw~~~~~~~~~~~~~~----~~~v~~~~~~ 68 (313)
T 3odt_A 5 FTGYQLSATL-KGHDQDVRDVVA-VDDSKVASVS----RD------GTVRLWSKDDQWLGTVVYTG----QGFLNSVCYD 68 (313)
T ss_dssp CCCCEEEEEE-CCCSSCEEEEEE-EETTEEEEEE----TT------SEEEEEEESSSEEEEEEEEC----SSCEEEEEEE
T ss_pred cccHHHHHHh-hCCCCCcEEEEe-cCCCEEEEEE----cC------CcEEEEECCCCEEEEEeecC----CccEEEEEEC
Confidence 444 566777 559999999999 9999999944 55 69999999888765333322 2445589998
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCC---eEEEEec--CCCEeEEEEeC------CCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKIRS------SSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg---~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
|+|++|++|+.|++|++||+.+. +++.++. ...|.+++|.+ +.|++|++|| +++.+..+..+...+
T Consensus 69 -~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v 145 (313)
T 3odt_A 69 -SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASV 145 (313)
T ss_dssp -TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCE
T ss_pred -CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCce
Confidence 89999999999999999998764 5566665 57899999965 4889999999 789999999777899
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
..++|.|.++..+++++.|++|++|| .++++..+.. |...+.+++|+|+++ |++++ |++|++||+ +++++.++.
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence 99999997678888899999999999 6778888887 889999999999999 77888 999999999 699999999
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
+|... |.+++|+||| .|++++. ||+|+|||+.+++++.++.+|..
T Consensus 223 ~~~~~-----i~~~~~~~~~-~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~------------------ 267 (313)
T 3odt_A 223 GHESF-----VYCIKLLPNG-DIVSCGE-----------DRTVRIWSKENGSLKQVITLPAI------------------ 267 (313)
T ss_dssp CCSSC-----EEEEEECTTS-CEEEEET-----------TSEEEEECTTTCCEEEEEECSSS------------------
T ss_pred cCCce-----EEEEEEecCC-CEEEEec-----------CCEEEEEECCCCceeEEEeccCc------------------
Confidence 99987 8999999999 4778876 99999999999999999999986
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+|||+ |++|+.||+|++||.
T Consensus 268 ----------------~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 268 ----------------SIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp ----------------CEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred ----------------eEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 899999999999 677999999999984
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.4e-41 Score=364.24 Aligned_cols=296 Identities=12% Similarity=0.167 Sum_probs=234.2
Q ss_pred EeecCCCceEEEEEEeeCC-CEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-eccccCceEEEEeCCCCcE
Q 012410 123 FLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKV 200 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g-~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~~~~~~~~VaFs~pdGk~ 200 (464)
.+ .+|.+.|++|+|+|++ +.|+| ++.| ++|+||++..++...+..... .+|...+.+|+|+ |||++
T Consensus 377 ~l-~~H~~~V~~v~~~~~~~~~l~s----~s~D------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~g~~ 444 (694)
T 3dm0_A 377 TM-RAHTDMVTAIATPIDNADIIVS----ASRD------KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQF 444 (694)
T ss_dssp EE-ECCSSCEEEEECCTTCCSEEEE----EETT------SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-TTSSE
T ss_pred hc-ccCCceeEEEEecCCCCCEEEE----EeCC------CcEEEEEccCCCcccccccceecCCCCcEEEEEEC-CCCCE
Confidence 45 4699999999999975 68888 4566 799999997765432211111 1233445589997 89999
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe----eCCcceeeE
Q 012410 201 LTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY----HLLHRNKKV 266 (464)
Q Consensus 201 LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~----~~~~~~~~V 266 (464)
|+||+.|++|||||+.+++++.++. ...|.+|+|+|+ .|++|+|||+. +++..++. +|...+.++
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECSSTTSCSSCEEEE
T ss_pred EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceeeccCCCCCCCcEEEE
Confidence 9999999999999999999998875 568999999883 78999999987 45555543 344568999
Q ss_pred EEEccCC-CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 267 DFIEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 267 ~F~~~~~-~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
+|+|... ..+++++.|++|+|||+++++++.++.+|...|.+++|+|||++|+|++ |++|+|||+ +|+++.++..|.
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~ 603 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC
Confidence 9998532 4577789999999999999999999999999999999999999999999 999999999 699999988764
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
. |.+++|+||+.+|++++ |+.|+|||+.+++++.++..|....... ....+.
T Consensus 604 -~-----v~~~~~sp~~~~l~~~~------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~--------- 655 (694)
T 3dm0_A 604 -V-----IHALCFSPNRYWLCAAT------------EHGIKIWDLESKSIVEDLKVDLKAEAEK-ADNSGP--------- 655 (694)
T ss_dssp -C-----EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECCCCC---------------------
T ss_pred -c-----EEEEEEcCCCcEEEEEc------------CCCEEEEECCCCCChhhhcccccccccc-cccccc---------
Confidence 2 88999999999999876 7789999999999999998765310000 000000
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
....+..-.|++|+|||||+.|+||+.||+|+|||.
T Consensus 656 -----~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 656 -----AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp ----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred -----ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 000112226899999999999999999999999984
No 40
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.8e-41 Score=338.07 Aligned_cols=296 Identities=13% Similarity=0.181 Sum_probs=256.9
Q ss_pred EEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 92 IEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
..+.+.|++|++++.+|.+++||..+++.+..+. +|...|+++.|+ ++.|+++ +.| +++++|++.+|
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~----~~d------g~i~vwd~~~~ 189 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DNIIISG----STD------RTLKVWNAETG 189 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEE--TTEEEEE----ETT------SCEEEEETTTT
T ss_pred EEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEec--CCEEEEE----eCC------CeEEEEECCcC
Confidence 4455569999999999999999999999999995 588899999998 5788884 455 79999999999
Q ss_pred CCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEE
Q 012410 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLK 243 (464)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIk 243 (464)
++...+..+. ..+.+++|+ ++.|++|+.|++|++||+.+++++.++. ...|.+++|.+ +.|++|+
T Consensus 190 ~~~~~~~~h~----~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 190 ECIHTLYGHT----STVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 262 (445)
T ss_dssp EEEEEECCCS----SCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred cEEEEECCCC----CcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEE
Confidence 8765444443 233478885 5689999999999999999999998876 56799999954 4789999
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s- 322 (464)
+||+++++++.++.++...+.+++| ++..+++++.|++|++||+++++++.++.+|...+.++.+ ++++|++++
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 337 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNA 337 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEET
T ss_pred EEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeC
Confidence 9999999999999977788899998 4578888999999999999999999999999988887766 577999999
Q ss_pred CCeEEEEeC-CCceEEEecc---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE-
Q 012410 323 NRTVAVWNF-RGELVTSFED---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI- 397 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~g---H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl- 397 (464)
|++|++||+ +|+++.++.+ |... |.+++|+ +++|++|+. ||+|+|||+.+|++++++
T Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~--~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~ 399 (445)
T 2ovr_B 338 DSTVKIWDIKTGQCLQTLQGPNKHQSA-----VTCLQFN--KNFVITSSD-----------DGTVKLWDLKTGEFIRNLV 399 (445)
T ss_dssp TSCEEEEETTTCCEEEEECSTTSCSSC-----EEEEEEC--SSEEEEEET-----------TSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEccCCCCCCC-----EEEEEEC--CCEEEEEeC-----------CCeEEEEECCCCceeeeee
Confidence 999999999 7999999998 6655 8889985 689999987 999999999999999999
Q ss_pred ----ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc----EEeccC
Q 012410 398 ----NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL----VHVWSN 464 (464)
Q Consensus 398 ----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt----VrlWd~ 464 (464)
.+|.. .|++++|+|+|..||+|+.||+ |.|||.
T Consensus 400 ~~~~~~~~~----------------------------------~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 400 TLESGGSGG----------------------------------VVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp ECTTGGGTC----------------------------------EEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred ccccCCCCc----------------------------------eEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 34544 8999999999999999999998 999983
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.4e-41 Score=333.32 Aligned_cols=269 Identities=12% Similarity=0.167 Sum_probs=231.1
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
+|..+-+. |++|++++.||++++||..+++....+.. |...|.+++|+|+|..|++ ++.| .++++|+
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~las----g~~d------~~i~v~~ 134 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIAC----GGLD------NKCSVYP 134 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEE----ESTT------SEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEE----eeCC------CCEEEEE
Confidence 45556555 88999999999999999999999999955 7888999999999999999 5566 7999999
Q ss_pred eccCCCCCccc-cee-eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC------
Q 012410 168 IRRGKPDSGFA-LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------ 237 (464)
Q Consensus 168 i~~G~~~~~~~-l~~-~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------ 237 (464)
+..++...... ... ..+...+..++|+ |+++.|++|+.|++|||||+++++++.++. ...|..++|+|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 87654322111 111 1133445589997 899999999999999999999999998886 467999999762
Q ss_pred ----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC--CceEEEEE
Q 012410 238 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF--MTPSAFIF 311 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~--~~v~sv~F 311 (464)
.|++|++||+.+|++++++..|...+.+|+|+| ++..+++++.|++|+|||+++++++..+..+. ..+.+++|
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 678999999999999999997778999999999 46778889999999999999999888776543 47889999
Q ss_pred cCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 312 LYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+|+|++|++++ |++|+|||+ +|+++.+|.+|..+ |++++|||||++|||||. |++|+||+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~-----v~~l~~spdg~~l~sgs~-----------D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-----VSTLRVSPDGTAFCSGSW-----------DHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc-----EEEEEECCCCCEEEEEcC-----------CCCEEecC
Confidence 99999999999 999999999 79999999999998 899999999999999997 99999996
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.7e-42 Score=342.01 Aligned_cols=276 Identities=11% Similarity=0.165 Sum_probs=231.3
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|..+.+. |++|++++.||++++||..+++.+..+.. |...|.+++|+|+|+.|++ ++.| .+++||
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~las----~~~d------~~v~iw 135 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQSVAC----GGLD------SACSIF 135 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSSEEEE----CCSS------SCCEEE
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCCEEEE----eeCC------CcEEEE
Confidence 456666665 89999999999999999999999999954 8888999999999999999 6667 799999
Q ss_pred EeccCCCCCc-cccee--eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-------CCCEeEEEEeC
Q 012410 167 YIRRGKPDSG-FALFE--SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------DKHVQEIKIRS 236 (464)
Q Consensus 167 ~i~~G~~~~~-~~l~~--~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-------~~~V~~Vafs~ 236 (464)
++.++....+ .+... ..+.+.+.+++|++.++..|++|+.|++|||||+.+++++.++. ...|.+++|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 9976442111 11110 11234445789984446679999999999999999999998772 45799999965
Q ss_pred ---------CCceeEEEEEcC-CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC--
Q 012410 237 ---------SSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-- 304 (464)
Q Consensus 237 ---------s~d~tIklWdi~-tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~-- 304 (464)
+.|++|+|||+. ++++++++.+|...+.+|+|+| ++..+++++.|++|+|||++++++++++..|..
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 378999999997 6788999998778999999999 467788899999999999999999998876533
Q ss_pred -----ceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe----ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcc
Q 012410 305 -----TPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF----EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 373 (464)
Q Consensus 305 -----~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl----~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~ 373 (464)
.|.+++|+|+|++|++++ |++|+|||. .++++.++ .+|... |++++|+|||++|||||.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~----- 364 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-----ISCLGLSSDGSALCTGSW----- 364 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC-----CCEEEECSSSSEEEEECT-----
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc-----eEEEEECCCCCEEEEeeC-----
Confidence 488999999999999999 999999999 69999988 688887 889999999999999987
Q ss_pred ccccCCCCeEEEEeCCCCe
Q 012410 374 QWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG~ 392 (464)
|++|+||++..++
T Consensus 365 ------D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 365 ------DKNLKIWAFSGHR 377 (380)
T ss_dssp ------TSCEEEEECCSSS
T ss_pred ------CCCEEEEecCCCc
Confidence 9999999986543
No 43
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.6e-41 Score=317.44 Aligned_cols=268 Identities=11% Similarity=0.089 Sum_probs=219.7
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEE
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiK 211 (464)
...|+||++| .||+ +.| ++|+|||+.+|++...+.++. +..++.+|+|+ |+|++||+|+.|++|+
T Consensus 28 ~~~l~WS~~~-~lAv----g~D-------~tV~iWd~~tg~~~~~~~~~~--~~~~V~~v~~~-~~~~~l~sgs~Dg~v~ 92 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAV----ALD-------NSVYLWSASSGDILQLLQMEQ--PGEYISSVAWI-KEGNYLAVGTSSAEVQ 92 (318)
T ss_dssp CBCEEECTTS-EEEE----EET-------TEEEEEETTTCCEEEEEECCS--TTCCEEEEEEC-TTSSEEEEEETTSEEE
T ss_pred ceEEEECCCC-EEEE----EeC-------CEEEEEECCCCCEEEEEEecC--CCCeEEEEEEC-CCCCEEEEEECCCcEE
Confidence 4568999987 6766 334 599999999999876544433 33556699997 8999999999999999
Q ss_pred EEeCCCCeEEEEecC--CCEeEEEEeC------CCceeEEEEEcCCC-cEEEEEeeCCcceeeEEEEccCCCeEEEEeCC
Q 012410 212 VFDLKNYTMLYSISD--KHVQEIKIRS------SSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 282 (464)
Q Consensus 212 lWdl~tg~~l~tl~~--~~V~~Vafs~------s~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D 282 (464)
|||+++++++.++.. ..+..+++.+ +.++.+++|+..++ ..+.++.+|...+..++|.+ .+..+++++.|
T Consensus 93 iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d 171 (318)
T 4ggc_A 93 LWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGND 171 (318)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred EeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecC
Confidence 999999999988874 4566666543 57889999999876 45567777778889999987 46677778999
Q ss_pred CeEEEEECCCCcE----EEEcccCCCceEEEEEcCCCcEE---EEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeE
Q 012410 283 ENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLF---LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 283 ~tIkIWDv~tg~~----l~~l~gh~~~v~sv~Fspdgqll---aS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~s 353 (464)
++|+|||++++++ +.....|...|.+++++|++..+ ++++ |++|+|||.. +++..... |... +..
T Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~-----v~~ 245 (318)
T 4ggc_A 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-----VCS 245 (318)
T ss_dssp SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSC-----EEE
T ss_pred cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceee-----eee
Confidence 9999999999874 34566778889999999877643 4566 9999999994 66666554 4443 789
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccc
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGE 433 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
+.|+|+++.+++++. +.|++|+|||+.+|+++++|+||++
T Consensus 246 ~~~~~~~~~~~~~sg---------~~d~~i~iwd~~~~~~~~~l~gH~~------------------------------- 285 (318)
T 4ggc_A 246 ILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHTS------------------------------- 285 (318)
T ss_dssp EEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCSS-------------------------------
T ss_pred eeecccccceEEEEE---------cCCCEEEEEECCCCcEEEEEcCCCC-------------------------------
Confidence 999999999988762 3499999999999999999999997
Q ss_pred cccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 434 ALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 434 ~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|+|||+.|||||.||+|||||.
T Consensus 286 ---~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 286 ---RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ---CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ---CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8999999999999999999999999984
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-41 Score=330.51 Aligned_cols=290 Identities=15% Similarity=0.177 Sum_probs=236.5
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeEEEEEe----ccCCC------CCc-
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYI----RRGKP------DSG- 176 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti~l~~i----~~G~~------~~~- 176 (464)
++.+|+.......... ..|...|.++.|+|+|+ .|++++ .| ++++||++ .+|+. ...
T Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~~~~----~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKE-IVKLDNIVSSTWNPLDESILAYGE----KN------SVARLARIVETDQEGKKYWKLTIIAEL 94 (425)
T ss_dssp --------CCCEECEE-EEECSCCSEEEECSSCTTEEEEEE----TB------TEEEEEEEEEC------CEEEEEEEEE
T ss_pred ccccccchhhhhheee-eeccCceEEEEECCCCCcEEEEec----CC------ceEEEEEEecccCCccccccccccccc
Confidence 5667765444443333 33557899999999999 999844 45 69999999 88883 111
Q ss_pred ---cccee--eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------Ccee
Q 012410 177 ---FALFE--SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVP 241 (464)
Q Consensus 177 ---~~l~~--~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~t 241 (464)
+..+. ..+...+.+++|+ |||++|++|+.|++|+||| .+++++..+. ...|.+++|+|+ .|++
T Consensus 95 ~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (425)
T 1r5m_A 95 RHPFALSASSGKTTNQVTCLAWS-HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV 172 (425)
T ss_dssp ECCCCCC------CBCEEEEEEC-TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCC
T ss_pred cccccccccccCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCe
Confidence 11110 0012245589997 8999999999999999999 7888888886 568999999884 6789
Q ss_pred EEEEEcCCCcEEEEEeeCCcc---------------eeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCce
Q 012410 242 LKILSIEDGTVLKVFYHLLHR---------------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 306 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~~~~---------------~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v 306 (464)
|++||+++|+++.++..+... +.+++|++. +.+++++.|+.|++||+.+++++..+.+|...|
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i 250 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI 250 (425)
T ss_dssp EEEEETTTTEEEEEECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeeeccCCCce
Confidence 999999999999999865455 899999985 788899999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 012410 307 SAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 307 ~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
.+++|+|++++|++++ |++|++||+ +++++.++.+|... |.+++|+||| +|++++. |++|+
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~~~~~-~l~~~~~-----------d~~i~ 313 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS-----IVSASWVGDD-KVISCSM-----------DGSVR 313 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC-----EEEEEEETTT-EEEEEET-----------TSEEE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc-----EEEEEECCCC-EEEEEeC-----------CCcEE
Confidence 9999999999999999 999999999 69999999999887 8999999999 9999986 99999
Q ss_pred EEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 385 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 385 lWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|||+.+++++.++.+|.. .|.+++|+|||+.||+|+.||+|++||.
T Consensus 314 i~d~~~~~~~~~~~~~~~----------------------------------~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 314 LWSLKQNTLLALSIVDGV----------------------------------PIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp EEETTTTEEEEEEECTTC----------------------------------CEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred EEECCCCcEeEecccCCc----------------------------------cEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 999999999999999986 8999999999999999999999999984
No 45
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-41 Score=328.59 Aligned_cols=247 Identities=12% Similarity=0.143 Sum_probs=197.4
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC--CCCCcccceeeccccCceEEEEeCC-CC
Q 012410 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLKWPGFVEFDDV-NG 198 (464)
Q Consensus 122 ~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G--~~~~~~~l~~~~~~~~~~~VaFs~p-dG 198 (464)
..+ .+|.+.|++++|+|+|+.|++ ++.| ++++||++..+ ++..++..|+ +.+.+|+|++| +|
T Consensus 3 ~~~-~~h~~~V~~~~~s~~g~~las----~s~D------~~v~iw~~~~~~~~~~~~l~gH~----~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 3 VIA-NAHNEMIHDAVMDYYGKRMAT----CSSD------KTIKIFEVEGETHKLIDTLTGHE----GPVWRVDWAHPKFG 67 (297)
T ss_dssp EEC-CSCSSCEEEEEECTTSSEEEE----EETT------SCEEEEEBCSSCBCCCEEECCCS----SCEEEEEECCGGGC
T ss_pred eec-cCCcCceEEEEECCCCCEEEE----EeCC------CEEEEEecCCCCcEEEEEEcccc----CCeEEEEecCCCcC
Confidence 344 459999999999999999999 4456 79999999643 4443333333 33458999743 49
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-CCeEE
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLL 277 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-~~~ll 277 (464)
++|||||.|++|||||++++++ +++.++..|...+.+|+|+|.. +..|+
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~------------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~l~ 117 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRW------------------------------SQIAVHAVHSASVNSVQWAPHEYGPMLL 117 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCB------------------------------CCCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred CEEEEEcCCCEEEEEEcCCCce------------------------------EEEEEeecCCCceeEEEeCcCCCCcEEE
Confidence 9999999999999999887642 1122233344567788887743 45777
Q ss_pred EEeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcCC-------------CcEEEEEe-CCeEEEEeC-CCc----eE
Q 012410 278 VKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYE-------------NQLFLTFR-NRTVAVWNF-RGE----LV 336 (464)
Q Consensus 278 a~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~Fspd-------------gqllaS~s-D~TIklWd~-~Ge----~l 336 (464)
+++.|++|+|||++++.. ...+.+|...|.+++|+|+ +++|||++ |++|+|||+ +++ ++
T Consensus 118 s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~ 197 (297)
T 2pm7_B 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (297)
T ss_dssp EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE
Confidence 799999999999998742 4577899999999999997 57999999 999999999 566 78
Q ss_pred EEeccCCCCcCCCCeeEEEECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCe--E-EEEE--ccCCCCCCccc
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGK--C-LAKI--NATNCSPKVDD 408 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg---~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--c-l~tl--~gh~~~~~~~~ 408 (464)
.+|++|..+ |++|+|+|++ ++|||+|. |++|+|||+.+++ + ...+ .+|..
T Consensus 198 ~~l~~H~~~-----V~~v~~sp~~~~~~~las~s~-----------D~~v~iWd~~~~~~~~~~~~~~~~~~~~------ 255 (297)
T 2pm7_B 198 STLEGHSDW-----VRDVAWSPTVLLRSYMASVSQ-----------DRTCIIWTQDNEQGPWKKTLLKEEKFPD------ 255 (297)
T ss_dssp EEECCCSSC-----EEEEEECCCCSSSEEEEEEET-----------TSCEEEEEESSTTSCCEEEESSSSCCSS------
T ss_pred EEecCCCCc-----eEEEEECCCCCCceEEEEEEC-----------CCcEEEEEeCCCCCccceeeeecccCCC------
Confidence 899999998 8999999995 89999987 9999999997753 2 2333 34543
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 409 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++++|+|||+.||+|+.|++|+||+
T Consensus 256 ----------------------------~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 256 ----------------------------VLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp ----------------------------CEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred ----------------------------cEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 899999999999999999999999997
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9e-42 Score=338.90 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=245.3
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~ 175 (464)
..|+.|++.+.+|.+++|+..+++....+.. + ..+...+|+|+|+.|+++ +.+ ++++||++.++++..
T Consensus 66 ~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~----~~d------g~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 66 KVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-A-DYTAVDTAKLQMRRFILG----TTE------GDIKVLDSNFNLQRE 133 (420)
T ss_dssp EEETTEEEEEETTEEEEEECCSEETTTTSCS-C-CEEEEEEECSSSCEEEEE----ETT------SCEEEECTTSCEEEE
T ss_pred ecCCeEEEEEcCCcEEEEEecccceeeEEec-C-CceEEEEEecCCCEEEEE----ECC------CCEEEEeCCCcceee
Confidence 3489999999999999999988888877743 4 667777999999999994 455 699999999887654
Q ss_pred cccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEE
Q 012410 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKIL 245 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklW 245 (464)
.+..|. ..+.+++|+ |+|++|++|+.|++|+|||+.+++++.++. ...|.+++|+|+ .|++|++|
T Consensus 134 ~~~~h~----~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 134 IDQAHV----SEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp ETTSSS----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eccccc----CccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 333333 445589997 899999999999999999999999988876 578999999984 78999999
Q ss_pred EcCCCcEEEEEee---CCcceeeEEEEcc--------------------CCCeEEEEeCCCeEEEEECCCCcEEEEc-cc
Q 012410 246 SIEDGTVLKVFYH---LLHRNKKVDFIEQ--------------------FNEKLLVKQENENLQILDVRNAELMEVS-RT 301 (464)
Q Consensus 246 di~tG~~l~tl~~---~~~~~~~V~F~~~--------------------~~~~lla~s~D~tIkIWDv~tg~~l~~l-~g 301 (464)
|+++|+++.++.. +...+.+++|.+. ++..+++++.|++|+|||+++++++..+ .+
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 9999999999984 2334455555431 3456777899999999999999987765 56
Q ss_pred CCCceEEEEEcCCCc-EEEEEe-CCeEEEEeC-CCc-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 302 EFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF-RGE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 302 h~~~v~sv~Fspdgq-llaS~s-D~TIklWd~-~Ge-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
|...|.+++|+|+++ +|++++ |++|++||+ +++ ++.++.+|.... |+.++ +|+|++|++++.
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~----v~~~~-~~~~~~l~s~~~--------- 354 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP----INNVY-FAAGALFVSSGF--------- 354 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC----EEEEE-EETTEEEEEETT---------
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC----ceEEE-eCCCCEEEEecC---------
Confidence 888999999999999 999999 999999999 565 488999854431 77775 468899999986
Q ss_pred CCCCeEEEEeCCCCe---------EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 378 GSAGSINVSSILTGK---------CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 378 s~DgtIklWdi~tG~---------cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
|++|+|||+.+++ +...+.+|.. .|.+++|+|||+
T Consensus 355 --d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~ 398 (420)
T 3vl1_A 355 --DTSIKLDIISDPESERPAIEFETPTFLVSNDD----------------------------------AVSQFCYVSDDE 398 (420)
T ss_dssp --TEEEEEEEECCTTCCSCEECTTSCEEECCSSC----------------------------------CCCEEEEECCSS
T ss_pred --CccEEEEeccCCCCCccceeccCccEEccCCc----------------------------------ceEEEEEccCCC
Confidence 9999999987742 2223334433 899999999999
Q ss_pred ---EEEEeeCCCcEEeccC
Q 012410 449 ---EIYTGNRHGLVHVWSN 464 (464)
Q Consensus 449 ---~LaSgs~DgtVrlWd~ 464 (464)
.|++.+.+|.+++|++
T Consensus 399 ~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 399 SNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp SSCEEEEEETTTEEEEEES
T ss_pred CcceEEEEcCCceEEEEec
Confidence 7888888999999974
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.9e-41 Score=328.30 Aligned_cols=273 Identities=8% Similarity=0.111 Sum_probs=226.9
Q ss_pred ceEEEEec---cceeehhccCCeEEeeeccc-----ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 90 KVIEIVAA---RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 90 ~v~~~~~a---g~~l~~l~~~g~~~~~~~~~-----g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
.|..+.+. +++|++++.||++++|++.+ +.++..+. +|...|.+++|+|+|..|+++ +.| +
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~----s~D------~ 87 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSA----SWD------K 87 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEE----ETT------S
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEE----eCC------C
Confidence 45555554 47999999999999998653 45677884 589999999999999999994 456 7
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS--- 236 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~--- 236 (464)
+++|||+.+|++...+..|. ..+.+|+|+ |+|++|++|+.|++|||||++ ++++.++. ...|..++|+|
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~----~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHK----SDVMSVDID-KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEEEETTTTEEEEEEECCS----SCEEEEEEC-TTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC--
T ss_pred EEEEEECCCCCeeEEEccCC----CcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCC
Confidence 99999999998765444444 334489997 899999999999999999996 66777775 46799999976
Q ss_pred -----------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 237 -----------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 237 -----------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
+.|++|++||++++++..++.+|...+.+++|+| ++..|++++.|++|+|||+.+++++.++.+| ..
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 239 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE 239 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECC-SC
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCC-Cc
Confidence 3678999999999999999998778999999999 4667777899999999999999999999876 57
Q ss_pred eEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCc---CCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 306 PSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWH---PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 306 v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~---~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|.+++|+|+|++|+++++..|++|++ .+.++..+..+.... ....+.+++|||||++||+|+. |+
T Consensus 240 v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~-----------Dg 308 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT-----------DN 308 (319)
T ss_dssp EEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET-----------TS
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec-----------Cc
Confidence 99999999999999999778999999 477888776542210 0112789999999999999987 99
Q ss_pred eEEEEeCCCCe
Q 012410 382 SINVSSILTGK 392 (464)
Q Consensus 382 tIklWdi~tG~ 392 (464)
+|+|||+.|++
T Consensus 309 ~i~vWd~~t~~ 319 (319)
T 3frx_A 309 VIRVWQVMTAN 319 (319)
T ss_dssp CEEEEEEEEC-
T ss_pred eEEEEEEeecC
Confidence 99999997753
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-42 Score=394.40 Aligned_cols=317 Identities=13% Similarity=0.163 Sum_probs=268.6
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccce------
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC------ 160 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~------ 160 (464)
..+..+.+. |+++++.+.+|.+++|+..+++.+..+ .+|...|.+++|+|+|..|+++|.++.-.+|++..
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~ 919 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA 919 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCS
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec-CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeee
Confidence 344445554 899999999999999999999999999 45889999999999999999977544433443210
Q ss_pred ---------------------------------------------------------------eeEEEEEeccCCCCCcc
Q 012410 161 ---------------------------------------------------------------RSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 161 ---------------------------------------------------------------~ti~l~~i~~G~~~~~~ 177 (464)
+.+.+|++.+|+....+
T Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~ 999 (1249)
T 3sfz_A 920 IVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999 (1249)
T ss_dssp SSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC
T ss_pred ecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec
Confidence 23445555555443222
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------CceeEEEEEcCC
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------SHVPLKILSIED 249 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------~d~tIklWdi~t 249 (464)
..+ ...+.+++|+ |||++|++++.|++|++||+.+++++.... ...|.+++|+|+ .|++|++||+.+
T Consensus 1000 ~~h----~~~v~~l~~s-~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1000 VGH----KKAVRHIQFT-ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp CCC----SSCCCCEEEC-SSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTT
T ss_pred ccC----CCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC
Confidence 222 2334489997 899999999999999999999999886443 678999999873 789999999999
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
|+++.++.+|...+.+++|+| ++..+++++.|++|+|||+.+++++.++.+|...|.+++|+|||++||+++ |++|+|
T Consensus 1075 ~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1075 GRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153 (1249)
T ss_dssp TCCCEEEECCSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCE
T ss_pred CceeEEEcccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999999998778899999998 467788899999999999999999999999999999999999999999999 999999
Q ss_pred EeC-CCceEEEe---------ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 329 WNF-RGELVTSF---------EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 329 Wd~-~Ge~l~tl---------~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
||+ +|+++.++ .+|..+ |.+++|||||++|+++ +|+|++||+.+|+++.++.
T Consensus 1154 wd~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~l~fs~dg~~l~s~-------------~g~v~vwd~~~g~~~~~~~ 1215 (1249)
T 3sfz_A 1154 WNVSDGQLLHSCAPISVEEGTATHGGW-----VTDVCFSPDSKTLVSA-------------GGYLKWWNVATGDSSQTFY 1215 (1249)
T ss_dssp EESSSSCCCCCCCCCC-------CCSC-----CCEEEECTTSSCEEEE-------------SSSEEEBCSSSCBCCCCCC
T ss_pred EECCCCceEEEeccccccccccccCce-----EEEEEECCCCCEEEEC-------------CCeEEEEECCCCceeeeee
Confidence 999 69998876 678887 8899999999999987 5899999999999999999
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+|.. .|++++|+|||+.|++|+.||+|++|+.
T Consensus 1216 ~~~~----------------------------------~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1216 TNGT----------------------------------NLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CSSC----------------------------------CCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred ccCC----------------------------------cccEEEECCCCCEEEEecCCcEEEEEee
Confidence 9976 7899999999999999999999999984
No 49
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=324.91 Aligned_cols=285 Identities=13% Similarity=0.117 Sum_probs=230.9
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC-
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN- 197 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd- 197 (464)
+.+..+..+|...|.++.|+|+|..+++++.....| ++++||++.+|++.. ....++...+.+++|+ |+
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d------~~v~iw~~~~~~~~~---~~~~~~~~~v~~~~~~-~~~ 77 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGT------GVIQLYEIQHGDLKL---LREIEKAKPIKCGTFG-ATS 77 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCC------EEEEEEEECSSSEEE---EEEEEESSCEEEEECT-TCC
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCC------cEEEEEeCCCCcccc---eeeecccCcEEEEEEc-CCC
Confidence 344444456999999999999998777644221125 799999999888642 2222233455589997 77
Q ss_pred --CcEEEEecCCCcEEEEeCCCCe-EEEEec--CCCEeEEEE------eC--------CCceeEEEEEcCCCc-EEEEEe
Q 012410 198 --GKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKI------RS--------SSHVPLKILSIEDGT-VLKVFY 257 (464)
Q Consensus 198 --Gk~LaSgs~D~tiKlWdl~tg~-~l~tl~--~~~V~~Vaf------s~--------s~d~tIklWdi~tG~-~l~tl~ 257 (464)
|++|++|+.|++|++||+.+++ ++.++. ...|.+++| +| +.|++|++||+++++ ++.++.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence 7999999999999999999998 777776 567999965 34 378899999999998 788886
Q ss_pred eCCc----ceeeEEEEc---cCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC---CCcEEEEEe-CCeE
Q 012410 258 HLLH----RNKKVDFIE---QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY---ENQLFLTFR-NRTV 326 (464)
Q Consensus 258 ~~~~----~~~~V~F~~---~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp---dgqllaS~s-D~TI 326 (464)
.+.. .+.+++|.+ +++..+++++.|++|++||+++++++.. ..|...|.+++|+| ++++|++++ |++|
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 3322 678888533 2466777789999999999999998655 66778999999999 999999999 9999
Q ss_pred EEEeC-CCceEEEec-----cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCC--------
Q 012410 327 AVWNF-RGELVTSFE-----DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTG-------- 391 (464)
Q Consensus 327 klWd~-~Ge~l~tl~-----gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-------- 391 (464)
++||+ +++++.++. +|... |.+++|+|||+ +|++++. ||+|+|||+.++
T Consensus 237 ~i~d~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASVSEKAHKST-----VWQVRHLPQNRELFLTAGG-----------AGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp EEEEEEEEETTTEEEEEEEECCSSC-----EEEEEEETTEEEEEEEEET-----------TSEEEEEEEECCSCC--CCT
T ss_pred EEEeCcCCCcccceeeeccCCCcCC-----EEEEEECCCCCcEEEEEeC-----------CCcEEEeecCCCcccccccC
Confidence 99999 577766555 99887 89999999999 8999987 999999999764
Q ss_pred -----------eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EeeCCCcE
Q 012410 392 -----------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLV 459 (464)
Q Consensus 392 -----------~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs~DgtV 459 (464)
+++.++.+|.. .|++++|+|||+.|+ ||+.||+|
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQ----------------------------------PISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSS----------------------------------CEEEEEECSSSTTEEEEEETTSEE
T ss_pred CCCccccccccceeeccccCCC----------------------------------CeeEEEEcCCCCeEEEEecCCCcE
Confidence 57888888876 899999999999998 89999999
Q ss_pred EeccC
Q 012410 460 HVWSN 464 (464)
Q Consensus 460 rlWd~ 464 (464)
+|||.
T Consensus 347 ~iw~~ 351 (357)
T 3i2n_A 347 RVLIV 351 (357)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99983
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.5e-41 Score=337.60 Aligned_cols=269 Identities=12% Similarity=0.119 Sum_probs=227.7
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
....|.||++| .||+ +-| ++|+|||+.+|++...+.+.. +..++.+|+|+ |||++||+|+.|++|
T Consensus 107 y~~~l~wS~~n-~lAv----gld-------~tV~lWd~~tg~~~~~~~~~~--~~~~V~sv~fs-pdg~~lasgs~Dg~v 171 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAV----ALD-------NSVYLWSASSGDILQLLQMEQ--PGEYISSVAWI-KEGNYLAVGTSSAEV 171 (420)
T ss_dssp TCBCEEECTTS-EEEE----EET-------TEEEEEETTTCCEEEEEECCS--TTCCEEEEEEC-TTSSEEEEEETTSCE
T ss_pred cceeEEECCCC-EEEE----EeC-------CEEEEEECCCCCEEEEEEecC--CCCcEEEEEEC-CCCCEEEEEECCCeE
Confidence 35668999865 7777 333 599999999999865443333 33556799998 899999999999999
Q ss_pred EEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcCC-CcEEEEEeeCCcceeeEEEEccCCCeEEEEeC
Q 012410 211 KVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 281 (464)
Q Consensus 211 KlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~t-G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~ 281 (464)
+|||+++++++.++. ...|.++++++ +.|+++++||..+ ...+.++.+|...+..+.|.| ++..+++++.
T Consensus 172 ~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~ 250 (420)
T 4gga_A 172 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGN 250 (420)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEET
T ss_pred EEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeec
Confidence 999999999999887 45688888765 5889999999886 456678887778889999988 4667777899
Q ss_pred CCeEEEEECCCCc----EEEEcccCCCceEEEEEcCCC-cEEEE--Ee-CCeEEEEeC-CCceEEEeccCCCCcCCCCee
Q 012410 282 NENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN-QLFLT--FR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 282 D~tIkIWDv~tg~----~l~~l~gh~~~v~sv~Fspdg-qllaS--~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
|++|+|||+.+++ .+.....|...|.+++|+|++ .++++ ++ |++|+|||+ +|+++.++..|.. +.
T Consensus 251 D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~------v~ 324 (420)
T 4gga_A 251 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ------VC 324 (420)
T ss_dssp TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC------EE
T ss_pred cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc------ee
Confidence 9999999999887 356778899999999999865 45555 45 999999999 7999999988864 78
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
++.|+|+++.|++++. +.|++|+|||+.+++++++|+||++
T Consensus 325 ~~~~~~~~~~lv~~sg---------~~d~~I~iwd~~~~~~v~~l~gH~~------------------------------ 365 (420)
T 4gga_A 325 SILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHTS------------------------------ 365 (420)
T ss_dssp EEEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCSS------------------------------
T ss_pred eeeecCCCCeEEEEEe---------cCCCEEEEEECCCCcEEEEEcCCCC------------------------------
Confidence 9999999999998762 2499999999999999999999997
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++|+|||||++|||||.|++|||||.
T Consensus 366 ----~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 366 ----RVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp ----CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ----CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8999999999999999999999999984
No 51
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-41 Score=346.86 Aligned_cols=291 Identities=13% Similarity=0.093 Sum_probs=229.4
Q ss_pred cCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEe
Q 012410 126 VSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS 204 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSg 204 (464)
..|+..|.+|+|+| ++..||+ |+.| ++|+|||+.+++......+. +|.+.+.+|+|++.||.+|+||
T Consensus 116 ~~~~~~V~~l~~~P~~~~~las----Gs~d------g~i~lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~~~l~s~ 183 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAV----GSKG------GDIMLWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNTNQFYAS 183 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEE----EETT------SCEEEECSSCCSCCEEECCC--SSSCCCCEEEECSSCTTEEEEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEE----EeCC------CEEEEEECCCCCceeEEEcc--CCCCCEEEEEEeCCCCCEEEEE
Confidence 34788899999999 5668888 5566 79999999888764322211 1334455899984489999999
Q ss_pred cCCCcEEEEeCCCCeEEEEec----CCCEeEEEEeC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC
Q 012410 205 AQDSIYKVFDLKNYTMLYSIS----DKHVQEIKIRS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 272 (464)
Q Consensus 205 s~D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~ 272 (464)
|.|++|||||++++.+..... ...+.+++|+| +.|++|+|||++ |+++.++..|...|.+|+|+|..
T Consensus 184 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTC
T ss_pred eCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCC
Confidence 999999999998776544333 23578899987 478999999996 67888888777899999999954
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEE---EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcC
Q 012410 273 NEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP 347 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~---~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~ 347 (464)
+..+++++.|++|+|||++++++.. ...+|...|.+++|+|||++|+|++ |++|+|||+ +|+++..+.+|.....
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc
Confidence 3456668899999999999987554 3468999999999999999999999 999999999 6999999998876322
Q ss_pred C-CCeeEEEECCCCCEEEEEecCCCccc-cccCCCCeEEEEeCCCCeEEEEEc-cCCCCCCcccccCCCCCCcccccccc
Q 012410 348 D-CNTNNIYITSDQDLIISYCKAEPEDQ-WMEGSAGSINVSSILTGKCLAKIN-ATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 348 ~-~~v~svafSpDg~~LaSgs~~~~~~~-~~~s~DgtIklWdi~tG~cl~tl~-gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
. ..+..+.|+|++.++++++..++.-. +..+.+++|+|||+.+|+++.++. +|..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~---------------------- 400 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS---------------------- 400 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC----------------------
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC----------------------
Confidence 1 11345789999999998875333322 344456899999999999999986 4554
Q ss_pred ccccccccccccCEEEE-EEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSL-FYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~sl-afspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.++ +|||||+.||||+ |++|+|||.
T Consensus 401 ------------~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 401 ------------GISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ------------CCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred ------------cEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 67776 7999999999987 889999984
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.2e-41 Score=336.83 Aligned_cols=270 Identities=11% Similarity=0.118 Sum_probs=228.9
Q ss_pred ccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecC-----------------CCceEEEEEEeeCCCEEEEEE
Q 012410 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVS-----------------PDEVIRSLFYNKNNDSLITVS 148 (464)
Q Consensus 88 ~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~-----------------~~~~i~Sv~fs~~g~~l~svS 148 (464)
...|..+-++ |++||+.+ ++.+++|++.+|+.+..+... +...|++++|+|+|+.|++
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s-- 140 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT-- 140 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE--
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE--
Confidence 4456666665 88999876 689999999999999888542 1225999999999999999
Q ss_pred eecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CC
Q 012410 149 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK 227 (464)
Q Consensus 149 a~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~ 227 (464)
++.| ++++|||+.++++...+..|. ..+.+++|+ |+|+.|++|+.|++|+|||+.+++++.++. ..
T Consensus 141 --~~~d------~~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (393)
T 1erj_A 141 --GAED------RLIRIWDIENRKIVMILQGHE----QDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207 (393)
T ss_dssp --EETT------SCEEEEETTTTEEEEEECCCS----SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred --EcCC------CeEEEEECCCCcEEEEEccCC----CCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence 4456 799999999988754444333 345589997 899999999999999999999999998876 56
Q ss_pred CEeEEEEeC-C--------CceeEEEEEcCCCcEEEEE-------eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 228 HVQEIKIRS-S--------SHVPLKILSIEDGTVLKVF-------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 228 ~V~~Vafs~-s--------~d~tIklWdi~tG~~l~tl-------~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
.|..++|+| + .|++|+|||+++|+++..+ .+|...+.+|+|+| ++..|++++.|++|+|||++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence 899999987 2 6889999999999999888 34567889999998 46778889999999999998
Q ss_pred C------------CcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEEC
Q 012410 292 N------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYIT 357 (464)
Q Consensus 292 t------------g~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafS 357 (464)
+ +.|..++.+|...|.+++|+|++++|+|++ |++|++||. +|+++.+|.+|... |.+++|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~-----v~~v~~~ 361 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-----VISVAVA 361 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEEEEC
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC-----EEEEEec
Confidence 6 457788999999999999999999999999 999999999 69999999999988 8999998
Q ss_pred C------CCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 358 S------DQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 358 p------Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
| ++++|||||. ||+|||||+.+
T Consensus 362 ~~~~~~p~~~~l~sgs~-----------Dg~i~iW~~~~ 389 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSG-----------DCKARIWKYKK 389 (393)
T ss_dssp SSCTTCTTCEEEEEEET-----------TSEEEEEEEEE
T ss_pred CCcCcCCCCCEEEEECC-----------CCcEEECcccc
Confidence 6 7999999987 99999999743
No 53
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.3e-41 Score=328.77 Aligned_cols=291 Identities=9% Similarity=0.013 Sum_probs=235.6
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-e-ccccCceEEEEeCCC---
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-S-ESLKWPGFVEFDDVN--- 197 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~-~~~~~~~~VaFs~pd--- 197 (464)
.+ .+|...|.+|+|+| +.|+++ +.| ++++||++.+++....+.... . .+...+..++|+ |+
T Consensus 11 ~~-~~h~~~i~~~~~~~--~~l~s~----~~d------g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~ 76 (397)
T 1sq9_A 11 AG-KAHDADIFSVSACN--SFTVSC----SGD------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL-QAIER 76 (397)
T ss_dssp ES-SCSSSCEEEEEECS--SEEEEE----ETT------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE-EEEET
T ss_pred hh-hhhhcCeEEEEecC--CeEEEE----cCC------CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe-ccccc
Confidence 44 56999999999999 788884 455 799999999988322211111 1 122344589998 78
Q ss_pred -C---cEEEEecCCCcEEEEeCCCCeE-----EEEec-------CCCEeEEEEe----CC---------CceeEEEEEcC
Q 012410 198 -G---KVLTYSAQDSIYKVFDLKNYTM-----LYSIS-------DKHVQEIKIR----SS---------SHVPLKILSIE 248 (464)
Q Consensus 198 -G---k~LaSgs~D~tiKlWdl~tg~~-----l~tl~-------~~~V~~Vafs----~s---------~d~tIklWdi~ 248 (464)
| ++|++++.|++|++||+.++++ +..+. ...|.+++|+ |+ .|+.|++||++
T Consensus 77 ~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 77 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred CCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 9 9999999999999999999987 77765 2679999999 73 56789999999
Q ss_pred C------CcEEE-----EEee-------CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc---C---CC
Q 012410 249 D------GTVLK-----VFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---E---FM 304 (464)
Q Consensus 249 t------G~~l~-----tl~~-------~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g---h---~~ 304 (464)
+ ++++. ++.. +...+.+++|+|+ + .+++++.|++|+|||+++++++..+.+ | ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence 9 88887 7743 5567899999994 4 777789999999999999999999999 9 89
Q ss_pred ceEEEEEcCCCcEEEEEe-C---CeEEEEeC-CCceEEEecc-------------CCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 305 TPSAFIFLYENQLFLTFR-N---RTVAVWNF-RGELVTSFED-------------HLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D---~TIklWd~-~Ge~l~tl~g-------------H~~~~~~~~v~svafSpDg~~LaSg 366 (464)
.|.+++|+|++++|++++ | ++|++||+ +++++.++.+ |... |.+++|+|||++|+++
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSGETLCSA 309 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-----EEEEEECSSSSEEEEE
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc-----EEEEEECCCCCEEEEE
Confidence 999999999999999999 9 99999999 6999999999 9887 8999999999999999
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEEEc------cCCCCCCcccccCCCCCCccccccccccccccccccccCEEE
Q 012410 367 CKAEPEDQWMEGSAGSINVSSILTGKCLAKIN------ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 440 (464)
Q Consensus 367 s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~------gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 440 (464)
+. |++|+|||+.+++++.++. +|... .+.|.. . ....+-..|++
T Consensus 310 ~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~g~~----------~---~~~~~~~~v~~ 359 (397)
T 1sq9_A 310 GW-----------DGKLRFWDVKTKERITTLNMHCDDIEIEED------ILAVDE----------H---GDSLAEPGVFD 359 (397)
T ss_dssp ET-----------TSEEEEEETTTTEEEEEEECCGGGCSSGGG------CCCBCT----------T---SCBCSSCCEEE
T ss_pred eC-----------CCeEEEEEcCCCceeEEEecccCcccchhh------hhcccc----------c---cccccCCceeE
Confidence 87 9999999999999999999 77110 000000 0 00000128999
Q ss_pred EEEcCCC----------CEEEEeeCCCcEEeccC
Q 012410 441 LFYDEER----------NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 441 lafspDg----------~~LaSgs~DgtVrlWd~ 464 (464)
++|+||| +.|++|+.||+|++||.
T Consensus 360 ~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 360 VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred EEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 9999999 79999999999999983
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.6e-40 Score=331.78 Aligned_cols=300 Identities=13% Similarity=0.160 Sum_probs=249.3
Q ss_pred eEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc
Q 012410 91 VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 170 (464)
Q Consensus 91 v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~ 170 (464)
+..+.+.+++|++++.+|.+++||..+++.+..+. +|...|+++.|+|++ .|++ ++.| +++++|++.+
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s----~s~d------g~i~vwd~~~ 192 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVS----GSTD------RTVRVWDIKK 192 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEE----EETT------SCEEEEETTT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEE----EeCC------CCEEEEECCC
Confidence 34555669999999999999999999999999995 588999999999998 7777 3455 7999999999
Q ss_pred CCCCCcccceeeccccCceEEEEeC-CCCcEEEEecCCCcEEEEeCCCCeE-----------------------EEEec-
Q 012410 171 GKPDSGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTM-----------------------LYSIS- 225 (464)
Q Consensus 171 G~~~~~~~l~~~~~~~~~~~VaFs~-pdGk~LaSgs~D~tiKlWdl~tg~~-----------------------l~tl~- 225 (464)
|++...+..+. ..+..++|++ ++|++|++|+.|++|++||+.+++. +.++.
T Consensus 193 ~~~~~~~~~h~----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 193 GCCTHVFEGHN----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp TEEEEEECCCS----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred CcEEEEECCCC----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 98765444333 3344788874 6889999999999999999998764 33343
Q ss_pred -CCCEeEEEEeC------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 012410 226 -DKHVQEIKIRS------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 298 (464)
Q Consensus 226 -~~~V~~Vafs~------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~ 298 (464)
...|..+...+ +.|++|++||+.+++++.++.+|...+.+++|+| ++..+++++.|++|+|||+.+++++.+
T Consensus 269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 34566665433 5789999999999999999997778999999999 467888899999999999999999999
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 012410 299 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 376 (464)
Q Consensus 299 l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~ 376 (464)
+.+|...|.+++|+ ++.|++++ |++|++||+ +++....+. |... +..++|+|+|++|++|+
T Consensus 348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~--------- 410 (464)
T 3v7d_B 348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNL-----SAITTFYVSDNILVSGS--------- 410 (464)
T ss_dssp ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTC-----CCEEEEEECSSEEEEEE---------
T ss_pred EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCC-----ccEEEEEeCCCEEEEec---------
Confidence 99999999999997 58999999 999999999 577766663 4333 67899999999999987
Q ss_pred cCCCCeEEEEeCCCCeEEEE-EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC
Q 012410 377 EGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 455 (464)
Q Consensus 377 ~s~DgtIklWdi~tG~cl~t-l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~ 455 (464)
|++|+|||+.+|+++++ +.+|.. .|++|+|+ ++..+++++.
T Consensus 411 ---dg~i~iwd~~~g~~~~~~~~~~~~----------------------------------~v~~v~~~-~~~l~~~~~~ 452 (464)
T 3v7d_B 411 ---ENQFNIYNLRSGKLVHANILKDAD----------------------------------QIWSVNFK-GKTLVAAVEK 452 (464)
T ss_dssp ---TTEEEEEETTTCCEEESCTTTTCS----------------------------------EEEEEEEE-TTEEEEEEEE
T ss_pred ---CCeEEEEECCCCcEEehhhccCCC----------------------------------cEEEEEec-CCEEEEEEEe
Confidence 89999999999999986 566664 89999998 4566667778
Q ss_pred CCcEEec
Q 012410 456 HGLVHVW 462 (464)
Q Consensus 456 DgtVrlW 462 (464)
||.+.+|
T Consensus 453 ~g~~~i~ 459 (464)
T 3v7d_B 453 DGQSFLE 459 (464)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 8876655
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-42 Score=337.25 Aligned_cols=276 Identities=9% Similarity=0.092 Sum_probs=232.4
Q ss_pred ceEEEEEEeeCCC-EEEEEEeec------CCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEE
Q 012410 130 EVIRSLFYNKNND-SLITVSVYA------SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (464)
Q Consensus 130 ~~i~Sv~fs~~g~-~l~svSa~~------sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~La 202 (464)
+.|.+++|+|+|+ .|++++..+ +.| ++++||++.+++.......+. +...+.+++|+ |||++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d------~~v~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s-~~~~~l~ 83 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTD------SSLELWSLLAADSEKPIASLQ--VDSKFNDLDWS-HNNKIIA 83 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCC------CCCEEEESSSGGGCSCSCCCC--CSSCEEEEEEC-SSSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCC------CeEEEEEccCCCCCcEEEEEe--cCCceEEEEEC-CCCCeEE
Confidence 4588999999998 788743222 455 799999998886432111121 22445589997 8999999
Q ss_pred EecCCCcEEEEeCCC----CeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCc------EEEEE---ee
Q 012410 203 YSAQDSIYKVFDLKN----YTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGT------VLKVF---YH 258 (464)
Q Consensus 203 Sgs~D~tiKlWdl~t----g~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~------~l~tl---~~ 258 (464)
+|+.|++|+|||+.+ .+++.++. ...|.+++|+|+ .|++|+|||+++++ ....+ ..
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred EEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence 999999999999998 45777776 568999999873 67899999999997 43333 45
Q ss_pred CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC------CCceEEEEEcCCC-cEEEEEe-CC---eEE
Q 012410 259 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE------FMTPSAFIFLYEN-QLFLTFR-NR---TVA 327 (464)
Q Consensus 259 ~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh------~~~v~sv~Fspdg-qllaS~s-D~---TIk 327 (464)
+...+.+++|+|+.+..+++++.|++|+|||+++++++..+..| ...+.+++|+|++ ++|++++ |+ +|+
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL 243 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence 55788999999954567777899999999999999999998877 7889999999997 6899999 88 999
Q ss_pred EEeC-CC-ceEEEec-cCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 328 VWNF-RG-ELVTSFE-DHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 328 lWd~-~G-e~l~tl~-gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
+||+ ++ +++.++. +|... |.+++|+| |+++|++++. |++|+|||+.+++++.++.+|..
T Consensus 244 ~~d~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~s~~~-----------dg~v~~wd~~~~~~~~~~~~~~~- 306 (416)
T 2pm9_A 244 IWDLRNANTPLQTLNQGHQKG-----ILSLDWCHQDEHLLLSSGR-----------DNTVLLWNPESAEQLSQFPARGN- 306 (416)
T ss_dssp EEETTSTTSCSBCCCSCCSSC-----EEEEEECSSCSSCEEEEES-----------SSEEEEECSSSCCEEEEEECSSS-
T ss_pred EEeCCCCCCCcEEeecCccCc-----eeEEEeCCCCCCeEEEEeC-----------CCCEEEeeCCCCccceeecCCCC-
Confidence 9999 45 7889999 99887 89999999 9999999987 99999999999999999999986
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEeeCCCcEEeccC
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg-~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+||+ +.|++|+.|++|+|||.
T Consensus 307 ---------------------------------~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 307 ---------------------------------WCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp ---------------------------------CCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred ---------------------------------ceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 89999999999 89999999999999984
No 56
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.5e-40 Score=339.92 Aligned_cols=262 Identities=15% Similarity=0.130 Sum_probs=210.4
Q ss_pred ccCCeEEeeecccc---cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee
Q 012410 105 AHSGVCAAFSRETN---RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (464)
Q Consensus 105 ~~~g~~~~~~~~~g---~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~ 181 (464)
+-..++.+|++.++ ++++++++ |...|..|+|.||-.-|+-| +.|++ ..
T Consensus 60 ~~~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~---------------------~~~~~------~~ 111 (356)
T 2w18_A 60 ACEDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCV---------------------ALGNL------EI 111 (356)
T ss_dssp EESSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEE---------------------EECSS------SE
T ss_pred eccceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeee---------------------eeccc------cc
Confidence 33458999999999 89999977 88889999999987666553 33443 12
Q ss_pred eccccCceEEEEeCCC----CcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEc-CCCcEEEEE
Q 012410 182 SESLKWPGFVEFDDVN----GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSI-EDGTVLKVF 256 (464)
Q Consensus 182 ~~~~~~~~~VaFs~pd----Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi-~tG~~l~tl 256 (464)
+.+.+|+|| || |++|++++.+ ++||++.+|+++.+.. +..|++|++|++ ++|+.+.++
T Consensus 112 ----~~v~sla~s-pd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~----------~g~d~~V~~~~~s~dG~~~~s~ 174 (356)
T 2w18_A 112 ----REIRALFCS-SDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSG----------TLSDQQVEVMTFAEDGGGKENQ 174 (356)
T ss_dssp ----EEEEEECC-------CCEEEEEEEEE--EEEEEETTTEEEEEES----------SSTTCEEEEEEECTTSCEEEEE
T ss_pred ----cceEEEEEC-CCccccccEEEeCCCe--EEEEecCCCcEEEecc----------cCCCCcEEEEEECCCCceeeee
Confidence 233489998 89 9999998844 9999999999987732 246888999999 679999999
Q ss_pred eeCCcceeeEEEEc-cC-CCeEEEEeCCCeEEEEECCCCcEEEEcccCC---CceEEEEEcCCCcEE------------E
Q 012410 257 YHLLHRNKKVDFIE-QF-NEKLLVKQENENLQILDVRNAELMEVSRTEF---MTPSAFIFLYENQLF------------L 319 (464)
Q Consensus 257 ~~~~~~~~~V~F~~-~~-~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~---~~v~sv~Fspdgqll------------a 319 (464)
..+.+.+..++|+| +. ++.|++++.|+||||||+.+|+|++++.+|. ..+.+++|||||+++ +
T Consensus 175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------
T ss_pred ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 98888899999998 43 4566667999999999999999999998754 367778999999987 6
Q ss_pred EEe-CCeEEEEeC-CCceEEEe-----ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 320 TFR-NRTVAVWNF-RGELVTSF-----EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 320 S~s-D~TIklWd~-~Ge~l~tl-----~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
|++ |+|||+||. +|+++.++ .||... +.+..+ +|.++|||+. |+||||||+.+|+
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~-----~lsg~~--sg~~lASgS~-----------DgTIkIWDl~tGk 316 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR-----FLEGDV--KDHCAAAILT-----------SGTIAIWDLLLGQ 316 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCC-----EEEEEE--ETTEEEEEET-----------TSCEEEEETTTCS
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcce-----eEcccc--CCCEEEEEcC-----------CCcEEEEECCCCc
Confidence 788 999999999 79999887 488765 333444 4899999987 9999999999999
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEE-EEEEcCCCCEEEEeeCCCcEEecc
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT-SLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~-slafspDg~~LaSgs~DgtVrlWd 463 (464)
|+++|++|.. .|. +|+|||||++|||||.|++|||||
T Consensus 317 ~l~tL~gH~~----------------------------------~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 317 CTALLPPVSD----------------------------------QHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EEEEECCC------------------------------------CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred EEEEecCCCC----------------------------------CeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 9999999986 444 589999999999999999999998
No 57
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-40 Score=326.44 Aligned_cols=274 Identities=13% Similarity=0.081 Sum_probs=213.1
Q ss_pred cceEEEEeccceeehhccCCeEEeeecccc--cEeeEeecC-CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 89 TKVIEIVAARDIVFALAHSGVCAAFSRETN--RRICFLNVS-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g--~~l~~ln~~-~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
.+|..+-+.+++|++++.||++++|++.++ +.+..+... |...|++|+|+|+|+.|+++ +.| ++++|
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~----s~D------~~v~i 84 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG----SFD------STVSI 84 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEE----ETT------SCEEE
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEE----eCC------CcEEE
Confidence 356677777889999999999999998775 456666444 99999999999999999994 456 79999
Q ss_pred EEeccCCCC-Cc-cccee-eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC----CCeEEEEec--CCCEeEEEEeC
Q 012410 166 EYIRRGKPD-SG-FALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLYSIS--DKHVQEIKIRS 236 (464)
Q Consensus 166 ~~i~~G~~~-~~-~~l~~-~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~----tg~~l~tl~--~~~V~~Vafs~ 236 (464)
|++..+... .. ..+.. ..+...+.+|+|+ |||++||+|+.|++|+|||+. .++++.++. ...|.+|+|+|
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 998643211 00 01111 1122344589997 899999999999999999994 236777776 46799999988
Q ss_pred C--------CceeEEEEEcCCC--cEEEEEeeCCcceeeEEEEccCCC-eEEEEeCCCeEEEEECCCC--------cEEE
Q 012410 237 S--------SHVPLKILSIEDG--TVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNA--------ELME 297 (464)
Q Consensus 237 s--------~d~tIklWdi~tG--~~l~tl~~~~~~~~~V~F~~~~~~-~lla~s~D~tIkIWDv~tg--------~~l~ 297 (464)
+ .|++|+|||+.++ +++.++.+|...+++++|+|..++ .|++++.|++|+|||+.++ +++.
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 243 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA 243 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence 4 7899999999887 789999988789999999995433 5677899999999999876 6777
Q ss_pred Eccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCc--eEE-EeccCCC-CcCCCCeeEEEECC--CCCEEEEEec
Q 012410 298 VSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGE--LVT-SFEDHLL-WHPDCNTNNIYITS--DQDLIISYCK 368 (464)
Q Consensus 298 ~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge--~l~-tl~gH~~-~~~~~~v~svafSp--Dg~~LaSgs~ 368 (464)
++.+ |...|++++|+|++ +|||++ |++|+|||. +|+ ++. .+.+|.. . |++++|+| |+++|||||.
T Consensus 244 ~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~-----v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYE-----INVVKWLELNGKTILATGGD 317 (330)
T ss_dssp ECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSC-----EEEEEEC-----CCEEEEET
T ss_pred ecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccce-----EEEEEEecCCCceEEEEecC
Confidence 7776 99999999999876 788888 999999999 574 444 4478876 5 89999999 7999999987
Q ss_pred CCCccccccCCCCeEEEEeCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~t 390 (464)
||+|+|||+.+
T Consensus 318 -----------Dg~v~~W~~~~ 328 (330)
T 2hes_X 318 -----------DGIVNFWSLEK 328 (330)
T ss_dssp -----------TSEEEEEEC--
T ss_pred -----------CCcEEEEEecc
Confidence 99999999864
No 58
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=327.11 Aligned_cols=276 Identities=11% Similarity=0.068 Sum_probs=220.3
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEee--EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~--~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
.+..+-+. |++|++++.||++++|+..+++.++ .+..+|...|++|+|+|+|+.|+++ +.| ++++|
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~----s~D------~~v~i 87 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA----SFD------ATTCI 87 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE----ETT------SCEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE----ECC------CcEEE
Confidence 45555555 9999999999999999988887554 3446799999999999999999994 456 79999
Q ss_pred EEeccCCC--CCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe---EEEEec--CCCEeEEEEeCC-
Q 012410 166 EYIRRGKP--DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS--DKHVQEIKIRSS- 237 (464)
Q Consensus 166 ~~i~~G~~--~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~---~l~tl~--~~~V~~Vafs~s- 237 (464)
|++..++. ...+.. +...+.+|+|+ |+|++||+|+.|++|+|||+.++. ++..+. ...|..|+|+|+
T Consensus 88 w~~~~~~~~~~~~~~~----h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEG----HENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp EEECCC-EEEEEEECC----CSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred EEccCCCeEEEEEccC----CCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 99987753 222222 22345589997 899999999999999999998763 455665 467999999884
Q ss_pred -------CceeEEEEEcCCCc--EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC---------------C
Q 012410 238 -------SHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---------------A 293 (464)
Q Consensus 238 -------~d~tIklWdi~tG~--~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t---------------g 293 (464)
.|++|+|||+++++ ++.++.+|...+.+|+|+| ++..|++++.|++|+|||+.. .
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 78999999999886 5678887778999999999 467788899999999999632 2
Q ss_pred cEEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc---------eEEEeccCCCCcCCCCeeEEEECCCC-
Q 012410 294 ELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQ- 360 (464)
Q Consensus 294 ~~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge---------~l~tl~gH~~~~~~~~v~svafSpDg- 360 (464)
+|+.++.+ |...|++++|+|++.+||+++ |++|+||+.. +. ..+.+.+|... |++|+|+|++
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~v~~~p~~~ 316 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD-----VNCVAWNPKEP 316 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC-----EEEEEECSSST
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc-----EeEeEEeCCCc
Confidence 56777776 889999999999999999999 9999999973 32 23345789887 8999999998
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 361 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 361 ~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.+|||||. ||+|+||++.+++-+..+
T Consensus 317 ~~laS~s~-----------Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 317 GLLASCSD-----------DGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TEEEEEET-----------TSCEEEEEECC-------
T ss_pred eEEEEcCC-----------CCcEEEEEecCCCCcccc
Confidence 59999987 999999999988865543
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=324.43 Aligned_cols=303 Identities=12% Similarity=0.145 Sum_probs=245.9
Q ss_pred hhccCCeEEeeecccccEeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee
Q 012410 103 ALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (464)
Q Consensus 103 ~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~ 181 (464)
....++.+++|+..+++....+. +|...|.+++|+| +|+.|+++ +.| ++++||++.+++....+....
T Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~----~~d------g~i~iw~~~~~~~~~~~~~~~ 86 (408)
T 4a11_B 18 LRRAESTRRVLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSG----GSD------GVIVLYDLENSSRQSYYTCKA 86 (408)
T ss_dssp HHHHHHHHHHHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEE----ETT------SCEEEEECCCCSSSSCEEECE
T ss_pred eeeccCcceeeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEE----cCC------CeEEEEECCCCcccceEeccc
Confidence 34455678899988888888884 5999999999999 99999994 455 699999999988765433111
Q ss_pred ---------eccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----------Cc
Q 012410 182 ---------SESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----------SH 239 (464)
Q Consensus 182 ---------~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----------~d 239 (464)
..+...+..++|+ | ++++|++++.|++|++||+.+++++..+. ...+..++|+|. .|
T Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 87 VCSIGRDHPDVHRYSVETVQWY-PHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp EEEECTTCTTCCSSCEEEEEEC-TTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred cccccccccccCCCcEEEEEEc-cCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC
Confidence 0123445589998 6 88899999999999999999999998776 677899999762 56
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCe-EEEEeCCCeEEEEECCCCc-EEEEc---------------ccC
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNAE-LMEVS---------------RTE 302 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~-lla~s~D~tIkIWDv~tg~-~l~~l---------------~gh 302 (464)
+.|++||+++++++.++..+...+.+++|+|. +.. +++++.|++|+|||+++++ ++..+ .+|
T Consensus 166 ~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 166 PKVQLCDLKSGSCSHILQGHRQEILAVSWSPR-YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp SSEEEEESSSSCCCEEECCCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred CeEEEEeCCCcceeeeecCCCCcEEEEEECCC-CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc
Confidence 89999999999999999977788999999995 454 6678999999999999886 55555 678
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCe-eEEEECCCCCEEEEEecCCCccccccCC
Q 012410 303 FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNT-NNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v-~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
...|.+++|+|+|++|++++ |++|++||+ +|+.+..+.++........+ ..+...+.+.+++ ++.
T Consensus 245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------- 312 (408)
T 4a11_B 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF-VPY----------- 312 (408)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE-EEE-----------
T ss_pred cCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE-Eec-----------
Confidence 89999999999999999999 999999999 68887766655432111112 2333334444444 444
Q ss_pred CCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 380 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 380 DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
|++|++||+.+|+++.++.+|.. .|++++|+|||+.||||+.||+|
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~~l~s~~~dg~i 358 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGHYK----------------------------------TVDCCVFQSNFQELYSGSRDCNI 358 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCCSS----------------------------------CEEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEEECcCCcceeeeccCCC----------------------------------eEEEEEEcCCCCEEEEECCCCeE
Confidence 89999999999999999999987 89999999999999999999999
Q ss_pred EeccC
Q 012410 460 HVWSN 464 (464)
Q Consensus 460 rlWd~ 464 (464)
++||.
T Consensus 359 ~iw~~ 363 (408)
T 4a11_B 359 LAWVP 363 (408)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99983
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-40 Score=321.90 Aligned_cols=289 Identities=12% Similarity=0.068 Sum_probs=229.5
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC--CCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~--~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
|.+.|.+++|+|+|+.|++ ++.+ ++++||++.+++ +...+..+ ...+.+++|+ |+|++|++++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~----~~~d------~~v~i~~~~~~~~~~~~~~~~h----~~~v~~~~~~-~~~~~l~~~~ 71 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAI----CPNN------HEVHIYEKSGNKWVQVHELKEH----NGQVTGVDWA-PDSNRIVTCG 71 (372)
T ss_dssp CSSCCCEEEECTTSSEEEE----ECSS------SEEEEEEEETTEEEEEEEEECC----SSCEEEEEEE-TTTTEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEE----EeCC------CEEEEEeCCCCcEEeeeeecCC----CCcccEEEEe-CCCCEEEEEc
Confidence 7788999999999999998 4455 799999999886 43333322 2345589998 8999999999
Q ss_pred CCCcEEEEeCCCCeEEEEec----CCCEeEEEEeCC--------CceeEEEEEcCCCc---EEEEEe-eCCcceeeEEEE
Q 012410 206 QDSIYKVFDLKNYTMLYSIS----DKHVQEIKIRSS--------SHVPLKILSIEDGT---VLKVFY-HLLHRNKKVDFI 269 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~----~~~V~~Vafs~s--------~d~tIklWdi~tG~---~l~tl~-~~~~~~~~V~F~ 269 (464)
.|++|+|||+.++++...+. ...|.+++|+|+ .|+.|++||+++++ +...+. .+...+.+++|+
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 99999999999998765442 567999999884 67899999999988 344443 455788999999
Q ss_pred ccCCCeEEEEeCCCeEEEEEC------------------CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEe
Q 012410 270 EQFNEKLLVKQENENLQILDV------------------RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 330 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv------------------~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd 330 (464)
| ++..+++++.|++|++||+ .+++++..+.+|...|.+++|+|+|++|++++ |++|++||
T Consensus 152 ~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 152 P-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp T-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred C-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9 4667778899999999995 47899999999999999999999999999999 99999999
Q ss_pred C-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--C--eEEEEEccCCCCCC
Q 012410 331 F-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--G--KCLAKINATNCSPK 405 (464)
Q Consensus 331 ~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t--G--~cl~tl~gh~~~~~ 405 (464)
+ +|+++.++.+|... |.+++|+|||++|++| . |++|+|||+.+ | +++.++..+...+.
T Consensus 231 ~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~-~-----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
T 1k8k_C 231 ADKKMAVATLASETLP-----LLAVTFITESSLVAAG-H-----------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 293 (372)
T ss_dssp GGGTTEEEEEECSSCC-----EEEEEEEETTEEEEEE-T-----------TSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred CCCCceeEEEccCCCC-----eEEEEEecCCCEEEEE-e-----------CCeEEEEEccCcCceEEEeeccCccccchh
Confidence 9 69999999999877 8999999999999988 4 99999999988 6 45555544332000
Q ss_pred cccccCCCCCCcccccccccccc----------------ccc-cccccCEEEEE-EcCCC---CEEEEeeCCCcEEecc
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIR----------------STV-GEALEDITSLF-YDEER---NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~~l~~V~sla-fspDg---~~LaSgs~DgtVrlWd 463 (464)
. ......++ ... ..+...|++|+ +++|| +.|+||+.||+|+|||
T Consensus 294 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 294 R--------------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -----------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred h--------------hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 0 00001111 001 12334899998 45888 9999999999999998
No 61
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-40 Score=374.61 Aligned_cols=319 Identities=12% Similarity=0.073 Sum_probs=250.8
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+|...|.+|+|+|+|+.||+ ++.| ++|+||+..++++. +...+...+.+|+|+ | |++|++++
T Consensus 14 ~gh~~~V~~lafspdg~~lAs----gs~D------g~I~lw~~~~~~~~-----~~~~~~~~V~~l~fs-p-g~~L~S~s 76 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAI----ATVT------GEVHIYGQQQVEVV-----IKLEDRSAIKEMRFV-K-GIYLVVIN 76 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEE----EETT------SEEEEECSTTCEEE-----EECSSCCCEEEEEEE-T-TTEEEEEE
T ss_pred cCCCCCcEEEEECCCCCEEEE----EeCC------CEEEEEeCCCcEEE-----EEcCCCCCEEEEEEc-C-CCEEEEEE
Confidence 357888999999999999999 4456 79999998776653 222222445699998 7 88999999
Q ss_pred CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------CceeEEEEEcCCCcEE-----------EEEeeCCcceee
Q 012410 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SHVPLKILSIEDGTVL-----------KVFYHLLHRNKK 265 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d~tIklWdi~tG~~l-----------~tl~~~~~~~~~ 265 (464)
.|++|+|||+.+++++.++. ...|.+|+|+|+ .|++|++||++++++. .++.+|...+.+
T Consensus 77 ~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp TTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred CcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 99999999999999998876 568999999984 7899999999999875 123445678999
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC------------------CCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE------------------FMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh------------------~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
|+|+|.++..+++++.|++| |||++++++++++.+| ...|.+++|+|||++|||++ |++|
T Consensus 157 l~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i 235 (902)
T 2oaj_A 157 IQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL 235 (902)
T ss_dssp EEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCE
T ss_pred EEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeE
Confidence 99999655678889999999 9999999999988776 56799999999999999999 9999
Q ss_pred EEEeC-CCceEEE--ec---cCCC---------CcCCCCeeEEEEC----CCC-CEEEEEecCCCc--------------
Q 012410 327 AVWNF-RGELVTS--FE---DHLL---------WHPDCNTNNIYIT----SDQ-DLIISYCKAEPE-------------- 372 (464)
Q Consensus 327 klWd~-~Ge~l~t--l~---gH~~---------~~~~~~v~svafS----pDg-~~LaSgs~~~~~-------------- 372 (464)
+|||+ +|+++.. +. +|.. .+ .-.|++++|+ ||+ .+|++|+.....
T Consensus 236 ~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~-~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~ 314 (902)
T 2oaj_A 236 VFWDANSGHMIMARTVFETEINVPQPDYIRDSSTN-AAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314 (902)
T ss_dssp EEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSC-CCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred EEEECCCCcEEEEEeecccccCCCCCcCCCCCccc-cCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence 99999 6998864 42 3421 00 0128999994 554 678888543100
Q ss_pred ------------------------------------------------cc---cccCCCCeEEEEeCCCCeEEEE-----
Q 012410 373 ------------------------------------------------DQ---WMEGSAGSINVSSILTGKCLAK----- 396 (464)
Q Consensus 373 ------------------------------------------------~~---~~~s~DgtIklWdi~tG~cl~t----- 396 (464)
|. ++.+.|++|++||+.+|+.+..
T Consensus 315 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~ 394 (902)
T 2oaj_A 315 RYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP 394 (902)
T ss_dssp CGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC
T ss_pred CccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCC
Confidence 00 2234579999999988853321
Q ss_pred ------------------------------------EccCCCCCCcccccCCCCCCcccccccccccccccccc------
Q 012410 397 ------------------------------------INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA------ 434 (464)
Q Consensus 397 ------------------------------------l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 434 (464)
|.||...+....+++++..+++.+.+++.++|+.....
T Consensus 395 ~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 395 QNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred CcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 45665555555678889999999999999999854322
Q ss_pred -------------ccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 435 -------------LEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 435 -------------l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
-..|++|+|||||++||+|+.||+|+|||
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd 516 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEE
Confidence 13799999999999999999999999998
No 62
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.5e-40 Score=324.75 Aligned_cols=267 Identities=12% Similarity=0.068 Sum_probs=218.1
Q ss_pred ceEEEEe--------ccceeehhccCCeEEeeeccc-------ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCC
Q 012410 90 KVIEIVA--------ARDIVFALAHSGVCAAFSRET-------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN 154 (464)
Q Consensus 90 ~v~~~~~--------ag~~l~~l~~~g~~~~~~~~~-------g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sdd 154 (464)
.|..+.+ .+++|++++.||++++|++.+ ++++..+ .+|...|.+++|+|+|..|++ ++.|
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~~~~l~s----~s~D 97 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQENCFAIS----SSWD 97 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSSTTEEEE----EETT
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCCCCEEEE----EcCC
Confidence 4556655 478999999999999999764 4567777 558899999999999999999 4456
Q ss_pred CcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-----CCCE
Q 012410 155 FSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKHV 229 (464)
Q Consensus 155 fs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-----~~~V 229 (464)
++++|||+++|++...+..|. ..+.+|+|+ |||+.|++|+.|++|||||+. +.+...+. ...|
T Consensus 98 ------~~v~lwd~~~~~~~~~~~~h~----~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 98 ------KTLRLWDLRTGTTYKRFVGHQ----SEVYSVAFS-PDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWV 165 (343)
T ss_dssp ------SEEEEEETTSSCEEEEEECCC----SCEEEEEEC-SSTTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCE
T ss_pred ------CcEEEEECCCCcEEEEEcCCC----CcEEEEEEC-CCCCEEEEEcCCCEEEEEecc-CCceeeeecccCCCcee
Confidence 799999999998765444443 334589997 899999999999999999997 45554432 4579
Q ss_pred eEEEEeCC------------------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 230 QEIKIRSS------------------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 230 ~~Vafs~s------------------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
.+++|+|. .|++|+||| .+++++.++..|...+.+++|+| ++..|++++.|++|+|||+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESS
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECC
Confidence 99999874 478999999 46888899997778999999999 46677789999999999994
Q ss_pred -CCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEE--Eec-----------cCCCCcCCCCeeEEEE
Q 012410 292 -NAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVT--SFE-----------DHLLWHPDCNTNNIYI 356 (464)
Q Consensus 292 -tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~--tl~-----------gH~~~~~~~~v~svaf 356 (464)
.+.+...+. +...|.+++|+|+++++++++|++|+|||+ +++++. +++ +|... |++++|
T Consensus 244 ~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~ 317 (343)
T 2xzm_R 244 NLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ-----CTSLAW 317 (343)
T ss_dssp CCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC-----EEEEEE
T ss_pred CCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc-----eEEEEE
Confidence 444545443 345699999999999998777999999999 576544 665 67766 899999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+|||++||+|+. ||+|+|||+.+|+
T Consensus 318 sp~g~~l~sg~~-----------Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 318 NALGKKLFAGFT-----------DGVIRTFSFETSA 342 (343)
T ss_dssp CSSSCCEEEEET-----------TSEEEEEEEEEEE
T ss_pred CCCCCeEEEecC-----------CceEEEEEEEccC
Confidence 999999999987 9999999988764
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.8e-41 Score=331.61 Aligned_cols=247 Identities=13% Similarity=0.121 Sum_probs=195.3
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC--CCcccceeeccccCceEEEEeCC-CCc
Q 012410 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP--DSGFALFESESLKWPGFVEFDDV-NGK 199 (464)
Q Consensus 123 ~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~--~~~~~l~~~~~~~~~~~VaFs~p-dGk 199 (464)
.+-.+|.+.|++|+|+|+|+.||+ ++.| ++++|||+.+|+. ...+.. |.+.+..|+|++| +|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~las----gs~D------~~v~lwd~~~~~~~~~~~l~g----H~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLAT----CSSD------RSVKIFDVRNGGQILIADLRG----HEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp -------CCEEEEEECGGGCEEEE----EETT------TEEEEEEEETTEEEEEEEEEC----CSSCEEEEEECCGGGSS
T ss_pred eecccccCeEEEeeEcCCCCEEEE----EeCC------CeEEEEEecCCCcEEEEEEcC----CCccEEEEEeCCCCCCC
Confidence 333569999999999999999999 4456 7999999988753 222222 2244558999744 599
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-CCeEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLLV 278 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-~~~lla 278 (464)
+|||||.|++|||||++++++ +++.++.+|...+.+|+|+|+. +..|++
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~las 122 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTW------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILAC 122 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCC------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEE
T ss_pred EEEEEECCCEEEEEECCCCcc------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEE
Confidence 999999999999999876532 1223344444667888888753 456777
Q ss_pred EeCCCeEEEEECCCCc---EEEEcccCCCceEEEEEcCC-----------------CcEEEEEe-CCeEEEEeCC-C---
Q 012410 279 KQENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYE-----------------NQLFLTFR-NRTVAVWNFR-G--- 333 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~---~l~~l~gh~~~v~sv~Fspd-----------------gqllaS~s-D~TIklWd~~-G--- 333 (464)
++.|++|+|||++++. +...+.+|...|.+++|+|+ +++|||++ |++|||||++ +
T Consensus 123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 8999999999999873 24678899999999999998 57999999 9999999994 4
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCCC----CEEEEEecCCCccccccCCCCeEEEEeCCCC---e-EEEEEccCCCCCC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKAEPEDQWMEGSAGSINVSSILTG---K-CLAKINATNCSPK 405 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpDg----~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG---~-cl~tl~gh~~~~~ 405 (464)
+++.+|++|..+ |++|+|+|++ ++|||||. |++|+|||+.++ + +...+.+|..
T Consensus 203 ~~~~~l~~h~~~-----V~~v~~sp~~~~~~~~las~s~-----------D~~v~iw~~~~~~~~~~~~~~~~~~~~--- 263 (316)
T 3bg1_A 203 KEEQKLEAHSDW-----VRDVAWAPSIGLPTSTIASCSQ-----------DGRVFIWTCDDASSNTWSPKLLHKFND--- 263 (316)
T ss_dssp EEEECCBCCSSC-----EEEEECCCCSSCSCCEEEEEET-----------TCEEEEEECSSTTCCCCBCCEEEECSS---
T ss_pred ceeeecccCCCc-----eEEEEecCCCCCCCceEEEEcC-----------CCeEEEEEccCccccchhhhhhhcCCC---
Confidence 478899999998 8999999997 89999997 999999999762 2 3345667765
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.|++|+|+|||+.||+|+.|++|+||+
T Consensus 264 -------------------------------~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 264 -------------------------------VVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp -------------------------------CEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred -------------------------------cEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 899999999999999999999999997
No 64
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-39 Score=337.31 Aligned_cols=336 Identities=12% Similarity=0.086 Sum_probs=278.1
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccc----cEeeEeecCCCce-EEEEEEee--CCCEEEEEEeecCCCCcccce
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETN----RRICFLNVSPDEV-IRSLFYNK--NNDSLITVSVYASDNFSSLKC 160 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g----~~l~~ln~~~~~~-i~Sv~fs~--~g~~l~svSa~~sddfs~L~~ 160 (464)
.+..+.+. |++|++.+ ++.+++|++.++ +.+..+ .+|... |.+++|+| +|+.|++++ .|
T Consensus 20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~~~l~s~~----~d------ 87 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGD----ES------ 87 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEE----TT------
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEE-ecCCCceEEEEEECcCCCCCEEEEec----CC------
Confidence 34444444 88888887 889999999999 899999 558888 99999999 999999944 45
Q ss_pred eeEEEEEeccC--------CCCCcccceeeccccCceEEEEeCCCCcEEEEecCC----CcEEEEeCCCCeEEEEec--C
Q 012410 161 RSTKIEYIRRG--------KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS--D 226 (464)
Q Consensus 161 ~ti~l~~i~~G--------~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D----~tiKlWdl~tg~~l~tl~--~ 226 (464)
++++||++.+| ++...+.. +...+..++|+ |||+.|++++.| +.|++|| +++++.++. .
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~ 160 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQV----LAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS 160 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEEC----CSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS
T ss_pred CEEEEEeCCCCcccccccccccchhhc----ccccEEEEEEe-CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC
Confidence 79999999876 32222221 22445589997 899999999988 6899998 677888776 5
Q ss_pred CCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCc---ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc
Q 012410 227 KHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLH---RNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 294 (464)
Q Consensus 227 ~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~---~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~ 294 (464)
..|.+++|+|+ .|++|++||+++++++.++..+.. .+.+++|+|+.+..+++++.|++|++||+.+++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 68999999885 568999999999999999997667 899999999436778889999999999999999
Q ss_pred EEEEc-c---cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 295 LMEVS-R---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 295 ~l~~l-~---gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
++..+ . +|...|.+++|+ ++++|++++ |++|++||+ +|+++.++..|...+.. .+.++.|+ ++++|++++.
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~ 317 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN-QQVGVVAT-GNGRIISLSL 317 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG-CEEEEEEE-ETTEEEEEET
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC-ceeEEEeC-CCCeEEEEEC
Confidence 99999 6 899999999999 999999999 999999999 69999999988432211 26788885 9999999987
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccc---cccccCEEEEEEcC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV---GEALEDITSLFYDE 445 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~V~slafsp 445 (464)
|++|++||+.+++++.++.+|...+....+ ++ +++...+...++|... ...-..|.+++| +
T Consensus 318 -----------~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~ 381 (615)
T 1pgu_A 318 -----------DGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-S 381 (615)
T ss_dssp -----------TSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEEC-C
T ss_pred -----------CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEE-C
Confidence 999999999999999999999875544455 43 6777777777777743 344458999999 7
Q ss_pred CCCEEEEeeCCCcEEecc
Q 012410 446 ERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 446 Dg~~LaSgs~DgtVrlWd 463 (464)
+++.|++++.|++|++||
T Consensus 382 ~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 382 KAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp STTCCEEEETTTEEEETT
T ss_pred CCcEEEEEeCCCCEEEEE
Confidence 788999999999999997
No 65
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.9e-39 Score=309.50 Aligned_cols=269 Identities=13% Similarity=0.152 Sum_probs=230.5
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.+|..+.+. |++|++++.+|.+++|+..+++.+..+. +|...|.++.|+|+|+.|++ ++.| ++++||
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s----~~~d------~~i~vw 92 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVS----ASDD------KTLKIW 92 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEE----EETT------SEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEE----ECCC------CEEEEE
Confidence 356666555 8999999999999999999999999994 58888999999999999999 4456 799999
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS------- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s------- 237 (464)
++.++++...+..+. ..+..++|+ |+|++|++|+.|++|+|||++++++++++. ...|.+++|+|+
T Consensus 93 d~~~~~~~~~~~~~~----~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 93 DVSSGKCLKTLKGHS----NYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp ETTTCCEEEEEECCS----SCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECCCCcEEEEEcCCC----CCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 999998765443333 344589997 899999999999999999999999999887 467999999874
Q ss_pred -CceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceE---EEEEc
Q 012410 238 -SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS---AFIFL 312 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~---sv~Fs 312 (464)
.|++|++||+.+++++.++. ++...+..++|+| ++..+++++.|++|+|||+++++++..+.+|...+. ...+.
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 68899999999999999886 4445778999998 467788899999999999999999999999876433 23344
Q ss_pred CCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 313 YENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 313 pdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
+++++|++++ |++|++||+ +++++++|.+|... |.+++|+|++.+||+++. +.|++|+||+.
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~l~s~~~---------~~d~~i~~W~~ 310 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-----VISTACHPTENIIASAAL---------ENDKTIKLWKS 310 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECSSSSEEEEEEC---------TTTCCEEEEEC
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc-----EEEEeecCcCCceEEEEc---------cCCccEEEecC
Confidence 8899999999 999999999 69999999999988 899999999999999973 24999999985
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-39 Score=348.26 Aligned_cols=340 Identities=12% Similarity=0.118 Sum_probs=274.9
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
.|..+.+. |++|++...+|.+++|+..+|+.+..+. .|...|.++.|+|+|+.|++++ .+ ++++||+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~----~d------g~i~vw~ 83 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGS----DD------FRIRVFN 83 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEE----TT------SEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEe----CC------CeEEEEE
Confidence 45555555 8999999999999999999999999995 5888899999999999999944 45 7999999
Q ss_pred eccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCC-eEEEEec--CCCEeEEEEeC-C------
Q 012410 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSIS--DKHVQEIKIRS-S------ 237 (464)
Q Consensus 168 i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg-~~l~tl~--~~~V~~Vafs~-s------ 237 (464)
+.+|+....+..+. ..+.+++|+ |+|+.|++|+.|++|+|||+.++ .+..++. ...|.+++|+| +
T Consensus 84 ~~~~~~~~~~~~~~----~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 84 YNTGEKVVDFEAHP----DYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp TTTCCEEEEEECCS----SCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred CCCCcEEEEEecCC----CCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 99998754433332 345589997 89999999999999999999987 6666665 56799999998 3
Q ss_pred --CceeEEEEEcCCCcEEEEEee-CCcceeeEEEEcc-CCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 238 --SHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 238 --~d~tIklWdi~tG~~l~tl~~-~~~~~~~V~F~~~-~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
.|++|++||+.+++...++.. +...+..++|+|. ++..+++++.|++|++||+.+++++.++.+|...|.+++|+|
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 679999999999999988874 3367899999984 345677788999999999999999999999999999999999
Q ss_pred CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC--EEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 314 ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD--LIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~--~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+|++|++++ |++|++||. +|+++.++..|... +++++|+|+|+ ++++++ |+.+.+|++.
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 301 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-----SWCIATHPTGRKNYIASGF------------DNGFTVLSLG 301 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSS-----EEEEEECTTCGGGEEEEEE------------TTEEEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCc-----EEEEEEccCCCceEEEEEe------------CCCEEEEEcC
Confidence 999999999 999999999 69999999999887 89999999998 677765 6778899876
Q ss_pred CCeEEEEE-------------------------------------------ccCCCCCCcccccCCCCCCcccccccccc
Q 012410 390 TGKCLAKI-------------------------------------------NATNCSPKVDDELGSSSTGKSKKLNKSSY 426 (464)
Q Consensus 390 tG~cl~tl-------------------------------------------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (464)
++.....+ ..|...|....++++|..+++.. ++...
T Consensus 302 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~ 380 (814)
T 3mkq_A 302 NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYV 380 (814)
T ss_dssp CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEE
T ss_pred CCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEE
Confidence 54322222 12222233445666776666655 45555
Q ss_pred cccccc---ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 427 IRSTVG---EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 427 ~~~~~~---~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+|.... .....|.+++|||||+.||+++.||+|++|+
T Consensus 381 i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 381 IYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp EEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred EEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 555332 2234677899999999999999999999985
No 67
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4e-40 Score=327.04 Aligned_cols=265 Identities=9% Similarity=0.088 Sum_probs=223.6
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEE
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiK 211 (464)
+.+++|+|+|+.|++++ .| +++++|++.+++....+..+ ......+|+ |||++||+|+.|++|+
T Consensus 59 ~~~~~~s~~g~~l~~~~----~d------~~v~i~d~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKAR----LD------GHDFLFNTIIRDGSKMLKRA-----DYTAVDTAK-LQMRRFILGTTEGDIK 122 (420)
T ss_dssp CTTCEEEEEETTEEEEE----ET------TEEEEEECCSEETTTTSCSC-----CEEEEEEEC-SSSCEEEEEETTSCEE
T ss_pred ccceeeeecCCeEEEEE----cC------CcEEEEEecccceeeEEecC-----CceEEEEEe-cCCCEEEEEECCCCEE
Confidence 44789999999999955 34 69999999888875433322 112245675 8999999999999999
Q ss_pred EEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeC
Q 012410 212 VFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 281 (464)
Q Consensus 212 lWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~ 281 (464)
|||+++++++..+. ...|.+++|+|+ .|++|+|||+++|+++.++.+|...+.+++|+| ++..+++++.
T Consensus 123 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~ 201 (420)
T 3vl1_A 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASL 201 (420)
T ss_dssp EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEET
T ss_pred EEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcC
Confidence 99999999998864 678999999884 679999999999999999998778999999999 4677888999
Q ss_pred CCeEEEEECCCCcEEEEcccC---CCceEE---------------------EEEcCCCcEEEEEe-CCeEEEEeC-CCce
Q 012410 282 NENLQILDVRNAELMEVSRTE---FMTPSA---------------------FIFLYENQLFLTFR-NRTVAVWNF-RGEL 335 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~gh---~~~v~s---------------------v~FspdgqllaS~s-D~TIklWd~-~Ge~ 335 (464)
|++|+|||+++++++..+..| ...+.+ ++|+|+|++|++++ |++|++||+ ++++
T Consensus 202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 999999999999999988753 334444 44579999999999 999999999 6888
Q ss_pred EEEec-cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEccCCCCCCcccccCC
Q 012410 336 VTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGS 412 (464)
Q Consensus 336 l~tl~-gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gh~~~~~~~~~~~~ 412 (464)
+..+. +|... |.+++|+|+|+ +|++|+. ||+|+|||+.++++ +.++.+|..
T Consensus 282 ~~~~~~~~~~~-----v~~~~~~~~~~~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~~~~---------- 335 (420)
T 3vl1_A 282 TIQLPSKFTCS-----CNSLTVDGNNANYIYAGYE-----------NGMLAQWDLRSPECPVGEFLINEG---------- 335 (420)
T ss_dssp EEEECCTTSSC-----EEEEEECSSCTTEEEEEET-----------TSEEEEEETTCTTSCSEEEEESTT----------
T ss_pred eEEcccccCCC-----ceeEEEeCCCCCEEEEEeC-----------CCeEEEEEcCCCcCchhhhhccCC----------
Confidence 77765 47766 89999999999 9999987 99999999999866 889988543
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..|++++| |+|+.|+||+.|++|+|||
T Consensus 336 -----------------------~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 336 -----------------------TPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp -----------------------SCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred -----------------------CCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 17888855 5889999999999999998
No 68
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-41 Score=329.14 Aligned_cols=301 Identities=11% Similarity=0.066 Sum_probs=213.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC--CCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG--KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G--~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
+...|.+++|+|+|+.|++ ++.| ++++||++.++ ++...+..|. ..+.+++|+ |+|++|++|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~----~~~d------~~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~s-~~~~~l~s~s 74 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVT----TTAT------NQVELYEQDGNGWKHARTFSDHD----KIVTCVDWA-PKSNRIVTCS 74 (377)
T ss_dssp CSSCCSCCEECSSSSEEEC----CCSS------SCBCEEEEETTEEEECCCBCCCS----SCEEEEEEC-TTTCCEEEEE
T ss_pred CCCcEEEEEECCCCCEEEE----ecCC------CEEEEEEccCCceEEEEEEecCC----ceEEEEEEe-CCCCEEEEEe
Confidence 4567999999999999988 5566 79999999988 5555444443 345589997 8999999999
Q ss_pred CCCcEEEEeCCCCe---EEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCc---EEEEEee-CCcceeeEEE
Q 012410 206 QDSIYKVFDLKNYT---MLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGT---VLKVFYH-LLHRNKKVDF 268 (464)
Q Consensus 206 ~D~tiKlWdl~tg~---~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~---~l~tl~~-~~~~~~~V~F 268 (464)
.|++|+|||+.+++ ++..+. ...|.+++|+|+ .|++|++||+++++ +++.+.. |...+.+++|
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence 99999999999987 555554 578999999884 67899999999998 4788886 6788999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECC------------------CCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEE
Q 012410 269 IEQFNEKLLVKQENENLQILDVR------------------NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~------------------tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklW 329 (464)
+| ++..+++++.|++|+|||+. +++++..+ +|...|.+++|+|||++||+++ |++|+||
T Consensus 155 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 155 HP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp CT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred cC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99 46677778999999999985 57788888 9999999999999999999999 9999999
Q ss_pred eC-CCce----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CC-eEEEEEccCCC
Q 012410 330 NF-RGEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TG-KCLAKINATNC 402 (464)
Q Consensus 330 d~-~Ge~----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG-~cl~tl~gh~~ 402 (464)
|+ ++++ +.++.+|... |.+++|+|||++|++|+. |+.+ +|+.. +| ++...+.....
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~ 295 (377)
T 3dwl_C 233 YPSAPEQPPRALITVKLSQLP-----LRSLLWANESAIVAAGYN-----------YSPI-LLQGNESGWAHTRDLDAGTS 295 (377)
T ss_dssp EECSTTSCEEECCCEECSSSC-----EEEEEEEETTEEEEEESS-----------SSEE-EECCCC---CCSBCCCSCCC
T ss_pred ECCCCCCcceeeEeecCCCCc-----eEEEEEcCCCCEEEEEcC-----------CcEE-EEEeCCCceEEEeeeccccc
Confidence 99 6888 8999999988 899999999999999974 6666 66654 33 23333332211
Q ss_pred CCCcccccCCCCCCcccccccc------ccccc------------cccccccCEEEEEEcCCC-C---EEEEeeCCCcEE
Q 012410 403 SPKVDDELGSSSTGKSKKLNKS------SYIRS------------TVGEALEDITSLFYDEER-N---EIYTGNRHGLVH 460 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~------------~~~~~l~~V~slafspDg-~---~LaSgs~DgtVr 460 (464)
.. .......+..+ ....... ..+.. ...-+-..|++|++.|+. . .|+||+.||+|+
T Consensus 296 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 296 KT-SFTHTGNTGEG-REEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CC-CBSSSSSBCCC-CCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred cc-ccccccccccc-cccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 00 00000000000 0000000 00000 001134589999965544 4 699999999999
Q ss_pred eccC
Q 012410 461 VWSN 464 (464)
Q Consensus 461 lWd~ 464 (464)
|||.
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 69
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.4e-39 Score=319.47 Aligned_cols=296 Identities=9% Similarity=0.048 Sum_probs=214.7
Q ss_pred eeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEE
Q 012410 112 AFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFV 191 (464)
Q Consensus 112 ~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~V 191 (464)
+|++.+.+.+..+ ..|...|++|+|||||+.|++ ++++ .++||++.+++.. +.. .......+
T Consensus 3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~dg~~la~----g~~~-------~~~iw~~~~~~~~-----~~~-~~~~~~~~ 64 (355)
T 3vu4_A 3 LGSMITRNPIVPE-NHVSNPVTDYEFNQDQSCLIL----STLK-------SFEIYNVHPVAHI-----MSQ-EMRHLSKV 64 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEE----ECSS-------EEEEEEETTEEEE-----EEE-ECSCCCEE
T ss_pred cccccccCCcccc-ccCCCceEEEEECCCCCEEEE----EcCC-------EEEEEecCCccee-----eee-ecCCeEEE
Confidence 4556777888777 448888999999999999988 5555 5789998876642 221 11235578
Q ss_pred EEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-----CceeEEEEEcCCC-cEEEEEeeCCcce
Q 012410 192 EFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-----SHVPLKILSIEDG-TVLKVFYHLLHRN 263 (464)
Q Consensus 192 aFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-----~d~tIklWdi~tG-~~l~tl~~~~~~~ 263 (464)
+|. +++..+ ++|+.|++|+|||+++++++.++. ...|.+|+|+++ .|.+|+|||+.++ ++++++.. ..
T Consensus 65 ~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 65 RML-HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp EEC-TTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EEc-CCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CC
Confidence 997 677777 568889999999999999998887 568999999884 5778999999999 88777764 34
Q ss_pred eeEEEEccCCCeEEE--EeCCCeEEEEECCCCc----------------EEEEcccCCCceEEEEEcCCCcEEEEEe-CC
Q 012410 264 KKVDFIEQFNEKLLV--KQENENLQILDVRNAE----------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 264 ~~V~F~~~~~~~lla--~s~D~tIkIWDv~tg~----------------~l~~l~gh~~~v~sv~FspdgqllaS~s-D~ 324 (464)
..++|++ ..+++ ++.|++|+|||+.+++ ++.++.+|...|.+++|+|||++|||++ |+
T Consensus 141 ~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 141 GVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred ceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence 5566666 56666 4699999999999987 3788999999999999999999999999 99
Q ss_pred e-EEEEeC-CCceEEEec-c-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEc
Q 012410 325 T-VAVWNF-RGELVTSFE-D-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKIN 398 (464)
Q Consensus 325 T-IklWd~-~Ge~l~tl~-g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~ 398 (464)
+ |+|||+ +|+++.+|. | |... |++++|+|||++||+++. |++|+|||+.++.. ...+.
T Consensus 218 ~~v~iwd~~~~~~~~~~~~g~h~~~-----v~~~~~s~~~~~l~s~s~-----------d~~v~iw~~~~~~~~~~~~~~ 281 (355)
T 3vu4_A 218 TIIRVFKTEDGVLVREFRRGLDRAD-----VVDMKWSTDGSKLAVVSD-----------KWTLHVFEIFNDQDNKRHALK 281 (355)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCSC-----EEEEEECTTSCEEEEEET-----------TCEEEEEESSCCSCCCSEETT
T ss_pred CEEEEEECCCCcEEEEEEcCCCCCc-----EEEEEECCCCCEEEEEEC-----------CCEEEEEEccCCCCccccccc
Confidence 9 999999 699999999 6 8877 899999999999999987 99999999977632 12221
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccc--cccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRS--TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
++-. |. . ....+.+.. ...........++|+|||+.|++|+.||++++|+
T Consensus 282 ~~~~-~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 282 GWIN-MK---------Y-----FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp TTEE-CC---------C-----CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ceee-cc---------c-----cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 1100 00 0 000000000 0001111346699999999999999999999996
No 70
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.7e-38 Score=302.10 Aligned_cols=274 Identities=9% Similarity=0.088 Sum_probs=222.7
Q ss_pred hccc-cceEEEEec---cceeehhccCCeEEeeeccccc-----EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCC
Q 012410 85 LMKR-TKVIEIVAA---RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNF 155 (464)
Q Consensus 85 l~~~-s~v~~~~~a---g~~l~~l~~~g~~~~~~~~~g~-----~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddf 155 (464)
|+.+ ..|..+.+. +++|++++.||++++||+.+++ ++..+ .+|...|.++.|+|+|+.|++++ .|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~----~d- 107 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSDGQFALSGS----WD- 107 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTTSSEEEEEE----TT-
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCCCCEEEEEc----cc-
Confidence 4444 346666664 6899999999999999976543 56677 45899999999999999999944 55
Q ss_pred cccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe-c--CCCEeEE
Q 012410 156 SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S--DKHVQEI 232 (464)
Q Consensus 156 s~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl-~--~~~V~~V 232 (464)
+.+++|+...+........ ....+..+.|+ ++++.|++|+.|+.+++||+......... . ...|..+
T Consensus 108 -----~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 108 -----GTLRLWDLTTGTTTRRFVG----HTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp -----SEEEEEETTTTEEEEEEEC----CSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred -----ccceEEeecccceeeeecC----CCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 6899999877665322111 12233367786 89999999999999999999876654332 2 4679999
Q ss_pred EEeC----------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC
Q 012410 233 KIRS----------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 233 afs~----------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh 302 (464)
+|++ +.|++|++||+++++++.++.+|...+.+|+|+| ++..|++++.|++|+|||+++++++..+.+|
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 9975 3678999999999999999998778999999998 4667777899999999999999999999877
Q ss_pred CCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEec---------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 012410 303 FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFE---------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 372 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~---------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~ 372 (464)
..+.+++|+|++.+++++.|++|+|||+ .++++.++. +|... |++++|+|||++||||+.
T Consensus 257 -~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~---- 326 (340)
T 4aow_A 257 -DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-----CTSLAWSADGQTLFAGYT---- 326 (340)
T ss_dssp -SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC-----EEEEEECTTSSEEEEEET----
T ss_pred -ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC-----EEEEEECCCCCEEEEEeC----
Confidence 5799999999999887777999999999 577777765 56665 899999999999999987
Q ss_pred cccccCCCCeEEEEeCCCCe
Q 012410 373 DQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 373 ~~~~~s~DgtIklWdi~tG~ 392 (464)
||+|+|||+.||+
T Consensus 327 -------Dg~v~iW~~~tGt 339 (340)
T 4aow_A 327 -------DNLVRVWQVTIGT 339 (340)
T ss_dssp -------TSCEEEEEEEC--
T ss_pred -------CCEEEEEeCCCcC
Confidence 9999999999985
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-40 Score=349.81 Aligned_cols=267 Identities=9% Similarity=-0.005 Sum_probs=209.2
Q ss_pred cccEeeEeecCCCceEEEEEEeeCC---------CEEEEEEee---------------cCCCCcccceeeEEEEEeccCC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNN---------DSLITVSVY---------------ASDNFSSLKCRSTKIEYIRRGK 172 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g---------~~l~svSa~---------------~sddfs~L~~~ti~l~~i~~G~ 172 (464)
++++...++ +...|++|.|+|++ ++||+++.. ++.| .+|+||++.+++
T Consensus 123 ~~r~~~~~~--~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D------~tI~iWd~~~~~ 194 (524)
T 2j04_B 123 GKRRGFIYN--VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHS------SCIQIFKMNTST 194 (524)
T ss_dssp CCSCEEEEE--CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------C------EEEEEEEEETTT
T ss_pred CCcceEEEE--CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCC------ceEEEEEccCCC
Confidence 455555664 46779999999997 788886532 3344 899999998887
Q ss_pred CCCcccc-eeeccccCceEEEEeCCC------CcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 173 PDSGFAL-FESESLKWPGFVEFDDVN------GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 173 ~~~~~~l-~~~~~~~~~~~VaFs~pd------Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
+...... +. .+.+.+..|+|+ |+ |++||||+.|++|||||+.++.+... ...
T Consensus 195 ~~~~~~~~l~-~~~~~V~~v~ws-p~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~----------------~~~--- 253 (524)
T 2j04_B 195 LHCVKVQTIV-HSFGEVWDLKWH-EGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH----------------VFK--- 253 (524)
T ss_dssp CCEEEEEEEE-ECCCSEEEEEEC-SSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS----------------EEE---
T ss_pred CCceEEEEEE-ecCCcEEEEEEC-CCCCCCCCCceEEEEecCCeEEEEEcCCCccccc----------------cce---
Confidence 5321100 11 123456689998 65 68999999999999999987653200 000
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEcccCCCceEEE--EEcCCC-cEEEEE
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAF--IFLYEN-QLFLTF 321 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv--~Fspdg-qllaS~ 321 (464)
.-.+...++.+|...+.+|+|++. +.|++|+.|++|+|||+++++ ++.++.+|...|.+| +|+|+| ++|||+
T Consensus 254 --~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 254 --MCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp --CCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred --eecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 001223456656678899999874 688889999999999999875 456789999999999 689998 999999
Q ss_pred e-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 322 R-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 322 s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
| |+||||||+ +++++.++.+|.... +|++|+|+||++.||+++. |++|||||+.+++|+.++.+
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~---~v~~v~fsp~~~~l~s~~~-----------d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGS---NLVPVVYCPQIYSYIYSDG-----------ASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCC---SCCCEEEETTTTEEEEECS-----------SSEEEEEETTCTTCCEEEEE
T ss_pred ccCCeEEEEECCCCCcccccccccccC---cccceEeCCCcCeEEEeCC-----------CCcEEEEECcccccceeeec
Confidence 9 999999999 699999999997521 2788999999999999886 99999999999999999999
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 400 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 400 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
|.+ .|++|+|||||+.|||||.||+|+|||.
T Consensus 396 H~~----------------------------------~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 396 RET----------------------------------TITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp CSS----------------------------------CEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred CCC----------------------------------ceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 997 9999999999999999999999999983
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.4e-39 Score=319.38 Aligned_cols=312 Identities=13% Similarity=0.167 Sum_probs=225.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC-----------CCcccceeec--------cccC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-----------DSGFALFESE--------SLKW 187 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-----------~~~~~l~~~~--------~~~~ 187 (464)
.+.+.|.+|+|+|+|+.||+ ++.| ++++||++.+++. ...+..|..+ ....
T Consensus 26 ~~~~~V~~v~~s~~g~~la~----g~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLAT----GDKG------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEE----EETT------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred cccCcEEEEEECCCCCEEEE----EcCC------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence 35688999999999999999 4455 7999999988873 2122222100 0033
Q ss_pred ceEEEEeCCCC--cEEEEecCCCcEEEEeCCCCeEE---------------------------------------EEe--
Q 012410 188 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTML---------------------------------------YSI-- 224 (464)
Q Consensus 188 ~~~VaFs~pdG--k~LaSgs~D~tiKlWdl~tg~~l---------------------------------------~tl-- 224 (464)
+..|+|+ |++ ..|++|+.|++|+|||+.++++. ..+
T Consensus 96 V~~l~~~-~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 96 INKIRWL-PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCEEEEC-CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred eEEEEEc-CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 5589997 888 79999999999999999876542 122
Q ss_pred -cCCCEeEEEEeCC-------CceeEEEEEcC-CCcEEEEE-------eeCCcceeeEEEEccCCCeEEEEeCCCeEEEE
Q 012410 225 -SDKHVQEIKIRSS-------SHVPLKILSIE-DGTVLKVF-------YHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 288 (464)
Q Consensus 225 -~~~~V~~Vafs~s-------~d~tIklWdi~-tG~~l~tl-------~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIW 288 (464)
+...|.+|+|+|+ .|++|+|||++ .+++++.+ ..|...+.+++|+|..+..+++++.|++|+||
T Consensus 175 ~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 175 AHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 3567999999874 68999999999 56677644 35557789999999522677779999999999
Q ss_pred ECCCCcE----EEEcccCCC------------ceEEEEEcCCCcEEEEEeCCeEEEEeC-C-CceEEEeccCCCCcC---
Q 012410 289 DVRNAEL----MEVSRTEFM------------TPSAFIFLYENQLFLTFRNRTVAVWNF-R-GELVTSFEDHLLWHP--- 347 (464)
Q Consensus 289 Dv~tg~~----l~~l~gh~~------------~v~sv~FspdgqllaS~sD~TIklWd~-~-Ge~l~tl~gH~~~~~--- 347 (464)
|++++++ +.++.+|.. .|.+++|+|+|++|+++++++|+|||+ . ++++.++.+|.....
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccccc
Confidence 9999997 789999886 899999999999999999999999999 5 999999999975321
Q ss_pred -----CC--CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccc
Q 012410 348 -----DC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 420 (464)
Q Consensus 348 -----~~--~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~ 420 (464)
+| .+.+++|+|||++||+|+. ||+|+|||+.+|+++ ++.+|.............. .+...
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----------dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 401 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSY-----------NNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRK-VCASG 401 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECS-----------TTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCC-EECSS
T ss_pred ccccccccccceEEEECCCCCEEEEecc-----------CCEEEEEEcCCCcce-eeeecccccccccccCCcc-ccccC
Confidence 01 0224999999999999987 999999999999987 6777765221111111000 00000
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 421 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 421 ~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
......+....-+.-..|..++|+|+|+.||+|+.|+ +.+|+
T Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 402 KRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred CcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 0000000000011223789999999999999999988 55554
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-37 Score=315.11 Aligned_cols=270 Identities=14% Similarity=0.173 Sum_probs=226.8
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
....+.+.+..++.++.| +++.|++ ++.| +++++|++.+|++...+..|+ +.+.+++|+ |++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~s----gs~d------g~i~vwd~~~~~~~~~~~~h~----~~V~~l~~~-~~~- 174 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVIT----GADD------KMIRVYDSINKKFLLQLSGHD----GGVWALKYA-HGG- 174 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEE----EETT------SCEEEEETTTTEEEEEECCCS----SCEEEEEEC-STT-
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEE----EcCC------CcEEEEECCCCcEEEEEeCCC----cCEEEEEEc-CCC-
Confidence 445675644555677666 4678988 4456 799999999998765544443 344589997 788
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC----------CCceeEEEEEcCCCc----------------
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS----------SSHVPLKILSIEDGT---------------- 251 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~----------s~d~tIklWdi~tG~---------------- 251 (464)
.|++|+.|++|+|||+.+++++.++. ...|.+++|++ +.|++|++||+++++
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 99999999999999999999999886 57899999974 378999999999887
Q ss_pred -------EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C
Q 012410 252 -------VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 252 -------~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D 323 (464)
++.++.++...+..+. + ++..+++++.|++|++||+.+++++..+.+|...|.+++|+|+|++|++++ |
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 331 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 3556666556666664 3 457888899999999999999999999999999999999999999999999 9
Q ss_pred CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 324 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 324 ~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
++|++||+ +|+++.++.+|... |.+++|+ +++|++++. ||+|++||+.++++..++. |..
T Consensus 332 g~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~--~~~l~s~s~-----------dg~v~vwd~~~~~~~~~~~-~~~ 392 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQGHTAL-----VGLLRLS--DKFLVSAAA-----------DGSIRGWDANDYSRKFSYH-HTN 392 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSC-----EEEEEEC--SSEEEEEET-----------TSEEEEEETTTCCEEEEEE-CTT
T ss_pred CcEEEEECCCCcEEEEEeCCCCc-----EEEEEEc--CCEEEEEeC-----------CCcEEEEECCCCceeeeec-CCC
Confidence 99999999 69999999999988 8899997 589999987 9999999999999887763 332
Q ss_pred CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+..++|+|+|+.|++|+ ||+|+|||.
T Consensus 393 ----------------------------------~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 393 ----------------------------------LSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp ----------------------------------CCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred ----------------------------------CccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 567789999999999999 999999984
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=304.29 Aligned_cols=285 Identities=14% Similarity=0.079 Sum_probs=230.2
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeC---CCEEEEEEeecCCCCcccceeeEEEEEecc-CCCC-Ccccceeec
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPD-SGFALFESE 183 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~---g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~-~~~~l~~~~ 183 (464)
.+..++....+.+..+ .+|.+.|.+|+|+|+ |+.|++ ++.| ++++||++.+ ++.. ..+..
T Consensus 20 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~~----~~~d------g~i~iw~~~~~~~~~~~~~~~---- 84 (368)
T 3mmy_A 20 SATTDNHNPMKDIEVT-SSPDDSIGCLSFSPPTLPGNFLIA----GSWA------NDVRCWEVQDSGQTIPKAQQM---- 84 (368)
T ss_dssp ---CCSSCTTCCEECS-SCCSSCEEEEEECCTTSSSEEEEE----EETT------SEEEEEEECTTSCEEEEEEEE----
T ss_pred EeccCCCCCcceeEec-cCCCCceEEEEEcCCCCCceEEEE----ECCC------CcEEEEEcCCCCceeEEEecc----
Confidence 3445555666777777 558999999999999 689988 4455 7999999987 5432 11221
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE--eCC--------CceeEEEEEcCCCcE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI--RSS--------SHVPLKILSIEDGTV 252 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf--s~s--------~d~tIklWdi~tG~~ 252 (464)
+...+.+++|+ |||++|++|+.|++|+|||+.+++++.... ...|.+++| +|+ .|++|++||++++++
T Consensus 85 h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 85 HTGPVLDVCWS-DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred ccCCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 23445589997 899999999999999999999999887554 678999999 653 689999999999999
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEE-E-cccCCCceEEEEEcCCCcE----EEEEe-CCe
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-V-SRTEFMTPSAFIFLYENQL----FLTFR-NRT 325 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~-~-l~gh~~~v~sv~Fspdgql----laS~s-D~T 325 (464)
+.++..+ ..+..+++.+ ..+++++.|+++++||+.+..... . ...+...+..+.+.++++. +++++ |++
T Consensus 164 ~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 239 (368)
T 3mmy_A 164 MMVLQLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239 (368)
T ss_dssp SEEEECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred EEEEecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence 9999865 4667777765 578888999999999998876433 2 2233445566666665554 88998 999
Q ss_pred EEEEeCC-C---ceEEEeccCCC------------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 326 VAVWNFR-G---ELVTSFEDHLL------------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 326 IklWd~~-G---e~l~tl~gH~~------------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|++||++ + +++.++.+|.. . |.+++|+|||++||+|+. ||+|+|||+.
T Consensus 240 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~s~~~-----------dg~i~iwd~~ 303 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA-----VNGIAFHPVHGTLATVGS-----------DGRFSFWDKD 303 (368)
T ss_dssp EEEEESSCSCHHHHSEEEECSEEC----CCCEEECC-----EEEEEECTTTCCEEEEET-----------TSCEEEEETT
T ss_pred EEEEecCCCCccccceeeeeeecccccccccccccc-----eEEEEEecCCCEEEEEcc-----------CCeEEEEECC
Confidence 9999994 5 67889999986 4 899999999999999987 9999999999
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+|+|+.++.+|.. .|++++|+|||+.||+|+.|+..+.|+
T Consensus 304 ~~~~~~~~~~~~~----------------------------------~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 304 ARTKLKTSEQLDQ----------------------------------PISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp TTEEEEECCCCSS----------------------------------CEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred CCcEEEEecCCCC----------------------------------CceEEEECCCCCeEEEEeccccccccc
Confidence 9999999999986 899999999999999999998766654
No 75
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.6e-38 Score=299.57 Aligned_cols=268 Identities=10% Similarity=0.069 Sum_probs=217.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
+...|.+++|+|||+.++++. ..+. +.+|..... ........+...+.+++|+ |||++|++++ |
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~--~~~~--------~~~~~~~~~----~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~-d 71 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPF--PPDA--------LIGPGIPRH----ARQINTLNHGEVVCAVTIS-NPTRHVYTGG-K 71 (337)
T ss_dssp EEEECCEEEECSSSCEEECCC--CTTS--------SSSTTCCSE----EEEEEEECCSSCCCEEEEC-SSSSEEEEEC-B
T ss_pred cCCceeEEEECCCCCEEEeec--CCCc--------EeccccCCc----cccceeccCCCceEEEEEe-cCCcEEEEcC-C
Confidence 456789999999999998733 2221 122221111 1111111223445589997 8999999999 9
Q ss_pred CcEEEEeCCCCeEE---EEe----cCCCEeEEEEeCC--------CceeEEEEEcCCCc--EEEEEeeCCcceeeEEEEc
Q 012410 208 SIYKVFDLKNYTML---YSI----SDKHVQEIKIRSS--------SHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIE 270 (464)
Q Consensus 208 ~tiKlWdl~tg~~l---~tl----~~~~V~~Vafs~s--------~d~tIklWdi~tG~--~l~tl~~~~~~~~~V~F~~ 270 (464)
++|+|||+.+++.. ..+ +...|.+++|+|+ .|++|++||+++++ +...+..+...+..++|+|
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT
T ss_pred CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC
Confidence 99999999987643 332 2567999999984 67899999999998 6667776667889999998
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCC
Q 012410 271 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPD 348 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~ 348 (464)
++..+++++.|++|++||+++++++..+.+|...+.+++|+|++++|++++ |++|++||+ +++++..+. |...
T Consensus 152 -~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~--- 226 (337)
T 1gxr_A 152 -DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ--- 226 (337)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC---
T ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCc---
Confidence 466778899999999999999999999999999999999999999999999 999999999 699888875 5444
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
+.+++|+|||++|++++. |++|++||+.+++.. .+.+|..
T Consensus 227 --v~~~~~s~~~~~l~~~~~-----------~~~i~~~~~~~~~~~-~~~~~~~-------------------------- 266 (337)
T 1gxr_A 227 --IFSLGYCPTGEWLAVGME-----------SSNVEVLHVNKPDKY-QLHLHES-------------------------- 266 (337)
T ss_dssp --EEEEEECTTSSEEEEEET-----------TSCEEEEETTSSCEE-EECCCSS--------------------------
T ss_pred --eEEEEECCCCCEEEEEcC-----------CCcEEEEECCCCCeE-EEcCCcc--------------------------
Confidence 889999999999999986 999999999988864 6778876
Q ss_pred ccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 429 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+++|+|||+.|++++.||+|++||.
T Consensus 267 --------~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 267 --------CVLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp --------CEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred --------ceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 8999999999999999999999999984
No 76
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.3e-38 Score=321.02 Aligned_cols=260 Identities=14% Similarity=0.257 Sum_probs=226.2
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.|...|.++.| +|+.|++ ++.| +++++|++.+|++...+..+. +.+.+++| ||++|++|+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~----g~~d------g~i~iwd~~~~~~~~~~~~h~----~~v~~l~~---~~~~l~sg~~ 191 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVS----GLRD------NTIKIWDKNTLECKRILTGHT----GSVLCLQY---DERVIITGSS 191 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEE----EESS------SCEEEEESSSCCEEEEECCCS----SCEEEEEC---CSSEEEEEET
T ss_pred CCCCcEEEEEE--CCCEEEE----EeCC------CeEEEEeCCCCeEEEEEcCCC----CcEEEEEE---CCCEEEEEcC
Confidence 45566888877 7899999 4455 799999999998765444433 23336666 6889999999
Q ss_pred CCcEEEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcCCCcEE---EEEeeCCcceeeEEEEccCCCe
Q 012410 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIEDGTVL---KVFYHLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~tG~~l---~tl~~~~~~~~~V~F~~~~~~~ 275 (464)
|++|+|||+.+++++.++. ...|.+++|++ +.|++|++||+++++.+ ..+.+|...+..++| ++..
T Consensus 192 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~ 268 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKY 268 (435)
T ss_dssp TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCE
Confidence 9999999999999999887 56799999976 48899999999999876 566666678899998 3478
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeE
Q 012410 276 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNN 353 (464)
Q Consensus 276 lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~s 353 (464)
+++++.|++|++||+++++++.++.+|...|.+++| ++++|++++ |++|++||+ +|+++.++.+|... |.+
T Consensus 269 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~ 341 (435)
T 1p22_A 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----VRC 341 (435)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----EEE
T ss_pred EEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCc-----EEE
Confidence 888999999999999999999999999999999988 578999999 999999999 69999999999988 888
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---------EEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---------CLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~---------cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
++| |+++|++|+. ||+|+|||+.+++ |+.++.+|..
T Consensus 342 ~~~--~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~---------------------- 386 (435)
T 1p22_A 342 IRF--DNKRIVSGAY-----------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG---------------------- 386 (435)
T ss_dssp EEC--CSSEEEEEET-----------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS----------------------
T ss_pred EEe--cCCEEEEEeC-----------CCcEEEEECCCCCCccccccchheeeccCCCC----------------------
Confidence 888 8999999987 9999999998888 9999999987
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++| |++.|+||+.||+|++||.
T Consensus 387 ------------~v~~l~~--~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 387 ------------RVFRLQF--DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp ------------CCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred ------------CeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence 8899999 8899999999999999984
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-38 Score=313.34 Aligned_cols=267 Identities=12% Similarity=0.135 Sum_probs=224.9
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEE
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiK 211 (464)
+.++.+++ +.+++++ .| ++++||++.+|++... +...+...+.+|+|+ |||++|++|+.|++|+
T Consensus 96 ~~~~~~s~--~~l~~~~----~d------~~v~lw~~~~~~~~~~---~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVA----LE------RNVYVWNADSGSVSAL---AETDESTYVASVKWS-HDGSFLSVGLGNGLVD 159 (401)
T ss_dssp CBCEEECT--TSEEEEE----ET------TEEEEEETTTCCEEEE---EECCTTCCEEEEEEC-TTSSEEEEEETTSCEE
T ss_pred EEEEeecC--CCEEEEE----CC------CeEEEeeCCCCcEeEe---eecCCCCCEEEEEEC-CCCCEEEEECCCCeEE
Confidence 44566665 4466633 34 6999999999987532 222233456689997 8999999999999999
Q ss_pred EEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcC-CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC
Q 012410 212 VFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 282 (464)
Q Consensus 212 lWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~-tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D 282 (464)
|||+.+++++.++. ...|.+++|++ +.|++|++||+. .++++.++..|...+.+++|+| ++..+++++.|
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d 238 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGND 238 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred EEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCC
Confidence 99999999999886 56899999976 588999999999 6778888987778999999999 56778889999
Q ss_pred CeEEEEECCCCcEEEEcccCCCceEEEEEcCCC-cEEEEEe---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEEC
Q 012410 283 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYIT 357 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg-qllaS~s---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafS 357 (464)
++|+|||+++++++..+.+|...|.+++|+|++ .++++++ |++|++||+ +|+++.++..+ .. |.+++|+
T Consensus 239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~-----v~~~~~s 312 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQ-----VTSLIWS 312 (401)
T ss_dssp SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SC-----EEEEEEC
T ss_pred CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-Cc-----EEEEEEC
Confidence 999999999999999999999999999999976 5777753 999999999 69999999744 34 8999999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE--EccCCCCCCcccccCCCCCCccccccccccccccccccc
Q 012410 358 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK--INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 435 (464)
Q Consensus 358 pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t--l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (464)
|||++|++++. +.||+|+|||+.++++... +.+|..
T Consensus 313 ~~~~~l~~~~g---------~~dg~i~v~~~~~~~~~~~~~~~~h~~--------------------------------- 350 (401)
T 4aez_A 313 PHSKEIMSTHG---------FPDNNLSIWSYSSSGLTKQVDIPAHDT--------------------------------- 350 (401)
T ss_dssp SSSSEEEEEEC---------TTTCEEEEEEEETTEEEEEEEEECCSS---------------------------------
T ss_pred CCCCeEEEEee---------cCCCcEEEEecCCccceeEEEecCCCC---------------------------------
Confidence 99999999541 1399999999999877655 678886
Q ss_pred cCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 436 EDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 436 ~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.+++|+|||+.|++|+.||+|++||.
T Consensus 351 -~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 351 -RVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp -CCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred -CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 8999999999999999999999999984
No 78
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.7e-38 Score=338.08 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=237.8
Q ss_pred EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc
Q 012410 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (464)
Q Consensus 120 ~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk 199 (464)
..+.+ .+|.+.|.+++|+|+|..|++++ .+ ++++||++.+|+....+..+. +.+.+++|+ |||+
T Consensus 5 ~~~~~-~~h~~~v~~i~~sp~~~~la~~~----~~------g~v~iwd~~~~~~~~~~~~~~----~~v~~~~~s-~~~~ 68 (814)
T 3mkq_A 5 IKKTF-SNRSDRVKGIDFHPTEPWVLTTL----YS------GRVEIWNYETQVEVRSIQVTE----TPVRAGKFI-ARKN 68 (814)
T ss_dssp CEEEE-EEECSCEEEEEECSSSSEEEEEE----TT------SEEEEEETTTTEEEEEEECCS----SCEEEEEEE-GGGT
T ss_pred cceee-ecCCCceEEEEECCCCCEEEEEe----CC------CEEEEEECCCCceEEEEecCC----CcEEEEEEe-CCCC
Confidence 34556 44888999999999999999944 45 699999999988765444333 345589998 8999
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCC-cEEEEEeeCCcceeeEEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDG-TVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG-~~l~tl~~~~~~~~~V~F 268 (464)
.||+|+.|++|+|||+.+++++.++. ...|.+++|+|+ .|++|++||++++ .+..++.++.+.+.+++|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 99999999999999999999998876 567999999984 6799999999988 777888877789999999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-CceEEEEEcC--CCcEEEEEe-CCeEEEEeC-CCceEEEeccCC
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLY--ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~Fsp--dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
+|.++..+++++.|++|++||+.+++....+..|. ..+..++|+| ++++|++++ |++|++||+ +|+++.++.+|.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 228 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 99545677778999999999999999887776655 7899999999 999999999 999999999 699999999998
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
.. |.+++|+|||++|++++. ||+|++||+.+++++.++..|..
T Consensus 229 ~~-----v~~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~~~~~--------------------- 271 (814)
T 3mkq_A 229 SN-----VSFAVFHPTLPIIISGSE-----------DGTLKIWNSSTYKVEKTLNVGLE--------------------- 271 (814)
T ss_dssp SC-----EEEEEECSSSSEEEEEET-----------TSCEEEEETTTCSEEEEECCSSS---------------------
T ss_pred CC-----EEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEeecCCC---------------------
Confidence 87 899999999999999987 99999999999999999999976
Q ss_pred cccccccccccccCEEEEEEcCCCC--EEEEeeCCCcEEecc
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWS 463 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~--~LaSgs~DgtVrlWd 463 (464)
.|++++|+|+|+ .+++|+ |+.+.+|+
T Consensus 272 -------------~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 272 -------------RSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp -------------SEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred -------------cEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 888999999987 456655 44455654
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-37 Score=314.68 Aligned_cols=270 Identities=10% Similarity=0.155 Sum_probs=218.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
+|+||++. ++.+++||..+|+.+..+.. .|.+.|.+|+|+|+|+.|++ ++.| ++++||++.+|++...
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~las----gs~D------g~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV----GTSS------AEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE----EETT------SCEEEEETTTTEEEEE
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEE----EECC------CeEEEEEcCCCcEEEE
Confidence 78887764 89999999999998887764 57788999999999999999 4556 7999999999987654
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEec--CCCEeEEEEeCC--------CceeEEEE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKIRSS--------SHVPLKIL 245 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~--~~~V~~Vafs~s--------~d~tIklW 245 (464)
+..|. ..+.+++ +|+++|++|+.|+++++||..+.. .+.++. ...|..+.++|+ .|+.|+||
T Consensus 185 ~~~h~----~~v~~~s---~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 185 MTSHS----ARVGSLS---WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp ECCCS----SCEEEEE---EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EeCCC----CceEEEe---eCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 44333 2222444 467899999999999999998754 445555 567999999873 78999999
Q ss_pred EcCCCcE----EEEEeeCCcceeeEEEEccCCCeEEEE--eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 246 SIEDGTV----LKVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 246 di~tG~~----l~tl~~~~~~~~~V~F~~~~~~~lla~--s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
++.+|+. +..+..+...+..++|+|.....++++ +.|++|+|||+.+|+++..+..|. .+.+++|+|+++.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELI 336 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEE
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEE
Confidence 9998873 456666667899999999655555553 489999999999999999998874 688999999999888
Q ss_pred EEe---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 320 TFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 320 S~s---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
+++ |++|+|||+ +|+++.+|.||... |++|+|||||++|||||. |++|||||+.+..+.+
T Consensus 337 ~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~-----V~~l~~spdg~~l~S~s~-----------D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAA-----------DETLRLWRCFELDPAR 400 (420)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TTEEEEECCSCSSCC-
T ss_pred EEEecCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEec-----------CCeEEEEECCCCCccc
Confidence 753 899999999 79999999999998 899999999999999997 9999999999888887
Q ss_pred EEccCCC
Q 012410 396 KINATNC 402 (464)
Q Consensus 396 tl~gh~~ 402 (464)
+.+.+..
T Consensus 401 ~~~~~~~ 407 (420)
T 4gga_A 401 RREREKA 407 (420)
T ss_dssp -------
T ss_pred hhhhccC
Confidence 7766654
No 80
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.7e-37 Score=309.52 Aligned_cols=278 Identities=15% Similarity=0.266 Sum_probs=232.8
Q ss_pred EeeecccccEeeEeecCCCc-eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCce
Q 012410 111 AAFSRETNRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 189 (464)
Q Consensus 111 ~~~~~~~g~~l~~ln~~~~~-~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~ 189 (464)
+-|....-+....+.+ |.+ ++.+ ++++|+.|+++ +.| +++++|++.+|++...+..|. +.+.
T Consensus 101 ~~w~~~~~~~~~~l~~-h~~~v~~~--~~~~g~~l~sg----~~d------g~i~vwd~~~~~~~~~~~~h~----~~v~ 163 (445)
T 2ovr_B 101 TNWRRGELKSPKVLKG-HDDHVITC--LQFCGNRIVSG----SDD------NTLKVWSAVTGKCLRTLVGHT----GGVW 163 (445)
T ss_dssp HHHHHSCCCCCEEEEC-STTSCEEE--EEEETTEEEEE----ETT------SCEEEEETTTCCEEEECCCCS----SCEE
T ss_pred hcccCCCcceeEEecc-cCCCcEEE--EEEcCCEEEEE----ECC------CcEEEEECCCCcEEEEEcCCC----CCEE
Confidence 3453333345566755 655 4555 55568999994 456 799999999999866555444 3344
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC------CCceeEEEEEcCCCcEEEEEeeCCc
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS------SSHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~------s~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
+++|+ +.+|++|+.|++|++||+.+++++.++. ...|.+++|++ +.|++|++||+++|+++.++.++..
T Consensus 164 ~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 240 (445)
T 2ovr_B 164 SSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240 (445)
T ss_dssp EEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred EEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence 88896 5699999999999999999999999887 56799999976 4899999999999999999998778
Q ss_pred ceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe
Q 012410 262 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF 339 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl 339 (464)
.+.+++| ++..+++++.|++|++||+++++++..+.+|...|.+++| +++.|++++ |++|++||+ +|+++.++
T Consensus 241 ~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 241 AVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315 (445)
T ss_dssp CEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred cEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 8899998 4678888999999999999999999999999999999999 899999999 999999999 69999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccc
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 419 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~ 419 (464)
.+|... +.++.+ ++++|++|+. ||+|++||+.+|+++.++.++..+
T Consensus 316 ~~~~~~-----v~~~~~--~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~---------------- 361 (445)
T 2ovr_B 316 TGHQSL-----TSGMEL--KDNILVSGNA-----------DSTVKIWDIKTGQCLQTLQGPNKH---------------- 361 (445)
T ss_dssp CCCCSC-----EEEEEE--ETTEEEEEET-----------TSCEEEEETTTCCEEEEECSTTSC----------------
T ss_pred cCCccc-----EEEEEE--eCCEEEEEeC-----------CCeEEEEECCCCcEEEEEccCCCC----------------
Confidence 999887 555554 6889999987 999999999999999999984320
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 420 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
...|++++|+ ++.|++|+.||+|++||.
T Consensus 362 ---------------~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 362 ---------------QSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ---------------SSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred ---------------CCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 0189999995 689999999999999984
No 81
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1e-37 Score=312.89 Aligned_cols=281 Identities=11% Similarity=0.151 Sum_probs=210.7
Q ss_pred ceEEEEec--cceeehhcc----CC---eEEeeecccccEe----------eEeecCCCceEEEEEEeeCCCEEEEEEee
Q 012410 90 KVIEIVAA--RDIVFALAH----SG---VCAAFSRETNRRI----------CFLNVSPDEVIRSLFYNKNNDSLITVSVY 150 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~----~g---~~~~~~~~~g~~l----------~~ln~~~~~~i~Sv~fs~~g~~l~svSa~ 150 (464)
||..+-|. |.+|+++.. +| .+++|++..+... ..| ..|.+.|.++.++ ++.+++.+..
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeC--CCEEEEEECC
Confidence 55555555 788888753 23 4999987654321 234 3466778887665 5667764322
Q ss_pred cCCCCcc-cceeeEEEEEeccCCCCCc----cccee-eccccCceEEEEeCCCCcEEE--EecCCCcEEEEeCCCCeEEE
Q 012410 151 ASDNFSS-LKCRSTKIEYIRRGKPDSG----FALFE-SESLKWPGFVEFDDVNGKVLT--YSAQDSIYKVFDLKNYTMLY 222 (464)
Q Consensus 151 ~sddfs~-L~~~ti~l~~i~~G~~~~~----~~l~~-~~~~~~~~~VaFs~pdGk~La--Sgs~D~tiKlWdl~tg~~l~ 222 (464)
....++. -..+++++|++..++.... ..... ...-.++..|+|| |||++|| |++.|++|||||++++++++
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 2211221 1127899999876653210 01111 0112345589998 9999875 66689999999999999999
Q ss_pred Eec-CCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCC----eEEEE
Q 012410 223 SIS-DKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENE----NLQIL 288 (464)
Q Consensus 223 tl~-~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~----tIkIW 288 (464)
++. ...|.+|+|+|+ .+..+++|+..+|+++.... .+...+.+|+|+|+ +..+++++.|+ ++++|
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD-DTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET-TEEEEEEEESSSCCEEEEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC-CCEEEEEecCCcceeEEeec
Confidence 886 567999999995 56678899999999886544 45567899999994 56667777776 79999
Q ss_pred ECCCCcE----EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEe-ccCCCCcCCCCeeEEEECCCCC
Q 012410 289 DVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSF-EDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 289 Dv~tg~~----l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl-~gH~~~~~~~~v~svafSpDg~ 361 (464)
|+..++. ...+.+|...|++++|||||++||+++ |++|+|||+ +|+++.++ ++|..+ |++|+|||||+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~-----V~~v~fSpdg~ 325 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA-----ITEVTISPDST 325 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC-----EEEEEECTTSC
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC-----EEEEEECCCCC
Confidence 9988764 356789999999999999999999999 999999999 69999985 899998 89999999999
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 362 LIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 362 ~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+|||||. |+|||||||.+.
T Consensus 326 ~laS~S~-----------D~tvrvw~ip~~ 344 (365)
T 4h5i_A 326 YVASVSA-----------ANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEET-----------TSEEEEEECCTT
T ss_pred EEEEEeC-----------CCeEEEEEcCCC
Confidence 9999997 999999999643
No 82
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.6e-38 Score=302.37 Aligned_cols=273 Identities=12% Similarity=0.019 Sum_probs=225.7
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc-EEEEe
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYS 204 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk-~LaSg 204 (464)
..|.+.|.+++|+|+|+.|++++ .| ++++||++..++........ ..+...+.+++|+ |+|+ +|++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~----~d------~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~-~~~~~~l~~~ 75 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITS----WD------GSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFI-DNTDLQIYVG 75 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEE----TT------SEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEE-ESSSEEEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEc----CC------CeEEEEEeCCCCccccceee-eecCCceEEEEEC-CCCCcEEEEE
Confidence 46999999999999999999844 45 69999999988721111111 1233455689998 8999 99999
Q ss_pred cCCCcEEEEeC-CCCeEEE-Ee--cCCCEeEEEEeC-------CCceeEEEEEcCC---------CcEEEEEeeCCccee
Q 012410 205 AQDSIYKVFDL-KNYTMLY-SI--SDKHVQEIKIRS-------SSHVPLKILSIED---------GTVLKVFYHLLHRNK 264 (464)
Q Consensus 205 s~D~tiKlWdl-~tg~~l~-tl--~~~~V~~Vafs~-------s~d~tIklWdi~t---------G~~l~tl~~~~~~~~ 264 (464)
+.|++|++||+ .+++... .. +...|.+++|+| +.|++|++||+.+ ++++.++. +...+.
T Consensus 76 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~ 154 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIF 154 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEE
T ss_pred cCCCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceE
Confidence 99999999999 8887643 22 456799999987 3778999999998 88888887 447889
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCC-Cc--EEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeC-CC-----
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRN-AE--LMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RG----- 333 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~--~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~-~G----- 333 (464)
+++|++. .+++++.|++|++||+++ ++ .......|...+.+++|+| ++++|++++ |++|+|||+ .+
T Consensus 155 ~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 155 TMDTNSS---RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEECSS---EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred EEEecCC---cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 9999873 488899999999999998 65 3445567888999999999 999999999 999999999 45
Q ss_pred -ceEEEeccCCCCcC----CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC-CCCCCcc
Q 012410 334 -ELVTSFEDHLLWHP----DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT-NCSPKVD 407 (464)
Q Consensus 334 -e~l~tl~gH~~~~~----~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh-~~~~~~~ 407 (464)
+++.+|.+|..... ...|++++|+|||++|++++. ||+|+|||+.+|+++.++.+| ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~h~~----- 295 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----------DGIISCWNLQTRKKIKNFAKFNED----- 295 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-----------TSCEEEEETTTTEEEEECCCCSSS-----
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-----------CceEEEEcCccHhHhhhhhcccCC-----
Confidence 88999999975100 001899999999999999987 999999999999999999998 76
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc-EEe
Q 012410 408 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL-VHV 461 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt-Vrl 461 (464)
.|++++ |||+.||+|+.||+ .+.
T Consensus 296 -----------------------------~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 296 -----------------------------SVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp -----------------------------EEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred -----------------------------CceEec--CCCCeEEEEecCCccccc
Confidence 899999 99999999999999 443
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-39 Score=322.04 Aligned_cols=251 Identities=10% Similarity=0.161 Sum_probs=202.7
Q ss_pred cCceEEEEeCC-CCcEEEEecCCCcEEEEeCCC---Ce---EEEEe-cCCCEeEEEEeCC--------CceeEEEEEcC-
Q 012410 186 KWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKN---YT---MLYSI-SDKHVQEIKIRSS--------SHVPLKILSIE- 248 (464)
Q Consensus 186 ~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~t---g~---~l~tl-~~~~V~~Vafs~s--------~d~tIklWdi~- 248 (464)
+.+.+|+|+ | ||++||+|+.|++|+|||+.+ +. +..++ +...|.+|+|+|+ .|++|+|||++
T Consensus 64 ~~V~~~~~s-~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 64 NSITSSAVS-PGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp SCEEEEEEE-CSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CceEEEEEC-CCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 445589998 8 999999999999999999987 44 33343 4678999999883 78999999994
Q ss_pred --CCcEEEEEeeCCcceeeEEEEc---------------cCCCeEEEEeCCCeEEEEECCCCcEEEEccc--CCCceEEE
Q 012410 249 --DGTVLKVFYHLLHRNKKVDFIE---------------QFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAF 309 (464)
Q Consensus 249 --tG~~l~tl~~~~~~~~~V~F~~---------------~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv 309 (464)
+|++++++.. +.+..+.|.| .++..+++++.|++|+|||+++++++.++.+ |...|.++
T Consensus 143 ~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 143 YQQESEVKFLNC--ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSI 220 (437)
T ss_dssp EEETTEEEEEEE--EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEE
T ss_pred ccCCceeecccc--ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEE
Confidence 8998888774 3455555443 2355677789999999999999999999998 88999999
Q ss_pred EEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec-cCCCCcCCCCeeEE----EECCCCCEEEEEecCCCccccccCCCCe
Q 012410 310 IFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE-DHLLWHPDCNTNNI----YITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 310 ~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~-gH~~~~~~~~v~sv----afSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+|+|++++|++++ |++|+|||+ +|+++.++. +|... |.++ +|+|||++|++|+. ||+
T Consensus 221 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----v~~~~~~~~~s~~~~~l~s~~~-----------dg~ 284 (437)
T 3gre_A 221 CIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP-----ITHVEVCQFYGKNSVIVVGGSS-----------KTF 284 (437)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE-----EEEEEECTTTCTTEEEEEEEST-----------TEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc-----eEEEEeccccCCCccEEEEEcC-----------CCc
Confidence 9999999999999 999999999 699999997 77766 8899 55568999999987 999
Q ss_pred EEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 383 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
|+|||+.+|+|+.++.+|...+....+++.+..+... .+. .......|++++|+ +++.|+||+.|++|++|
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~--~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~w 355 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL------NFC--GIRSLNALSTISVS-NDKILLTDEATSSIVMF 355 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC------CCC--CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEE
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccc------eec--ccccCCceEEEEEC-CceEEEecCCCCeEEEE
Confidence 9999999999999999998755555555443221000 000 01233479999999 88999999999999999
Q ss_pred cC
Q 012410 463 SN 464 (464)
Q Consensus 463 d~ 464 (464)
|.
T Consensus 356 d~ 357 (437)
T 3gre_A 356 SL 357 (437)
T ss_dssp ET
T ss_pred EC
Confidence 84
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.7e-37 Score=305.25 Aligned_cols=275 Identities=10% Similarity=0.078 Sum_probs=232.3
Q ss_pred cceEEEEeccceeehhccCCeEEeeeccccc------EeeEeecCCCceEEEEEEeeC----C---CEEEEEEeecCCCC
Q 012410 89 TKVIEIVAARDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKN----N---DSLITVSVYASDNF 155 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~------~l~~ln~~~~~~i~Sv~fs~~----g---~~l~svSa~~sddf 155 (464)
..|..+.+..++|++++.+|.+++|+..+++ .+..+. .|...|.++.|+|+ | +.|++++ .|
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~----~d- 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS----FS- 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE----TT-
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc----CC-
Confidence 4677777778999999999999999999888 788884 58888999999999 9 9998844 45
Q ss_pred cccceeeEEEEEeccCCC-----CCcccceeecc--ccCceEEEEeC---CCCcE-EEEecCCCcEEEEeCCC------C
Q 012410 156 SSLKCRSTKIEYIRRGKP-----DSGFALFESES--LKWPGFVEFDD---VNGKV-LTYSAQDSIYKVFDLKN------Y 218 (464)
Q Consensus 156 s~L~~~ti~l~~i~~G~~-----~~~~~l~~~~~--~~~~~~VaFs~---pdGk~-LaSgs~D~tiKlWdl~t------g 218 (464)
+++++|++.+++. ...+..++. + ...+.+++|++ |+|+. |++++.|++|++||+.+ +
T Consensus 91 -----g~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 91 -----GDLLFYRITREDETKKVIFEKLDLLDS-DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp -----SCEEEEEEEECTTTCCEEEEEECCSCT-TGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred -----CCEEEEEccCCcccccccceeeccccc-ccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 6999999999886 333332210 0 13455899962 69999 99999999999999998 7
Q ss_pred eEEE-----Ee---------cCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEee---C---CcceeeEEEEcc
Q 012410 219 TMLY-----SI---------SDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFYH---L---LHRNKKVDFIEQ 271 (464)
Q Consensus 219 ~~l~-----tl---------~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~---~---~~~~~~V~F~~~ 271 (464)
+++. ++ +...|.+++|+|+ .|+.|++||+++++++.++.. | ...+.+++|+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 7665 65 3567999999874 688999999999999999987 6 788999999984
Q ss_pred CCCeEEEEeCC---CeEEEEECCCCcEEEEccc-------------CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC
Q 012410 272 FNEKLLVKQEN---ENLQILDVRNAELMEVSRT-------------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG 333 (464)
Q Consensus 272 ~~~~lla~s~D---~tIkIWDv~tg~~l~~l~g-------------h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~G 333 (464)
+..+++++.| ++|+|||+++++++..+.+ |...|.+++|+|+|++|++++ |++|+|||+ ++
T Consensus 245 -~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 245 -GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred -CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 6777778899 9999999999999999999 999999999999999999999 999999999 69
Q ss_pred ceEEEec------cC---------------CCCcCCCCeeEEEECCCC----------CEEEEEecCCCccccccCCCCe
Q 012410 334 ELVTSFE------DH---------------LLWHPDCNTNNIYITSDQ----------DLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 334 e~l~tl~------gH---------------~~~~~~~~v~svafSpDg----------~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+++.++. +| ... |++++|+||| ++|++++. ||+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----v~~~~~~~~g~~~~~~~~~~~~l~s~~~-----------dg~ 387 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-----VFDVKFLKKGWRSGMGADLNESLCCVCL-----------DRS 387 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-----EEEEEEECTTTSBSTTCTTSCEEEEEET-----------TTE
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCc-----eeEEEeccccccccccccccceEEEecC-----------CCc
Confidence 9999999 88 666 8999999999 79999987 999
Q ss_pred EEEEeCCCCe
Q 012410 383 INVSSILTGK 392 (464)
Q Consensus 383 IklWdi~tG~ 392 (464)
|+|||+.+|+
T Consensus 388 i~iw~~~~g~ 397 (397)
T 1sq9_A 388 IRWFREAGGK 397 (397)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEcCCCC
Confidence 9999998875
No 85
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.7e-37 Score=291.10 Aligned_cols=253 Identities=13% Similarity=0.165 Sum_probs=201.8
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc-cceeeccccCceEEEEeCC--CCcEEE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF-ALFESESLKWPGFVEFDDV--NGKVLT 202 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~-~l~~~~~~~~~~~VaFs~p--dGk~La 202 (464)
.+|.+.|.++.|+|+|+.|+++ +.| ++++||++.++...... ..+. .+...+.+++|+ | ||++|+
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~----~~d------g~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~d~~~l~ 75 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATC----SSD------QHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWA-SPEYGRIIA 75 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEE----ETT------SEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEEC-CGGGCSEEE
T ss_pred cccccceeEEEEcCCCCEEEEe----eCC------CeEEEEECCCCCCcceecceec-cCCCcEEEEEEc-CCCCCCEEE
Confidence 6799999999999999999994 455 79999999877532111 1111 133445589998 6 699999
Q ss_pred EecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-CCeEEEEeC
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQE 281 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-~~~lla~s~ 281 (464)
+|+.|++|+|||+.+++... . ....+++.++..+...+.+++|+|.. +..+++++.
T Consensus 76 s~~~dg~v~vwd~~~~~~~~--------------~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEEC--------------S---------GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp EEETTSCEEEEEECTTSCTT--------------S---------SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred EEcCCCeEEEEecCCCcccc--------------c---------ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence 99999999999998764310 0 00113455555555778889998843 567888899
Q ss_pred CCeEEEEECCCCcEEEEcc-------------cCCCceEEEEEcCC---CcEEEEEe-CCeEEEEeC-CCce--EEEecc
Q 012410 282 NENLQILDVRNAELMEVSR-------------TEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNF-RGEL--VTSFED 341 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~-------------gh~~~v~sv~Fspd---gqllaS~s-D~TIklWd~-~Ge~--l~tl~g 341 (464)
|++|+|||+++++++..+. +|...+.+++|+|+ +++|++++ |+.+.+|+. .++. +.++.+
T Consensus 133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (351)
T 3f3f_A 133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG 212 (351)
T ss_dssp TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC
T ss_pred CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC
Confidence 9999999999998765443 68889999999998 99999999 999988887 4665 889999
Q ss_pred CCCCcCCCCeeEEEECCCC----CEEEEEecCCCccccccCCCCeEEEEeCCCC--------------------------
Q 012410 342 HLLWHPDCNTNNIYITSDQ----DLIISYCKAEPEDQWMEGSAGSINVSSILTG-------------------------- 391 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg----~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG-------------------------- 391 (464)
|... |.+++|+|+| ++||+|+. ||+|+|||+.++
T Consensus 213 h~~~-----i~~~~~~p~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (351)
T 3f3f_A 213 HKSL-----IRSISWAPSIGRWYQLIATGCK-----------DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA 276 (351)
T ss_dssp CCSC-----EEEEEECCCSSCSSEEEEEEET-----------TSCEEEEEEEECC-------------------------
T ss_pred CCcc-----eeEEEECCCCCCcceEEEEEcC-----------CCeEEEEeCCCCcCccccCCcccceeccCCCccccccc
Confidence 9988 8999999999 89999987 999999999887
Q ss_pred --------------------eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 392 --------------------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 392 --------------------~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
+++.++.+|.. .|++|+|+|||+.||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------------------------------~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNG----------------------------------EVWSVSWNLTGTILS 322 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSS----------------------------------CEEEEEECSSSCCEE
T ss_pred ccccccccceeeeecccccccEEEEEecccc----------------------------------cEEEEEEcCCCCEEE
Confidence 45555555543 899999999999999
Q ss_pred EeeCCCcEEecc
Q 012410 452 TGNRHGLVHVWS 463 (464)
Q Consensus 452 Sgs~DgtVrlWd 463 (464)
||+.||+|+|||
T Consensus 323 s~~~dg~v~iw~ 334 (351)
T 3f3f_A 323 SAGDDGKVRLWK 334 (351)
T ss_dssp EEETTSCEEEEE
T ss_pred EecCCCcEEEEe
Confidence 999999999998
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=299.98 Aligned_cols=274 Identities=11% Similarity=0.090 Sum_probs=220.3
Q ss_pred cceEEEEec--c-ceeehhcc---CCeEEeeecccccEeeEeecCCCceEEEEEEeeC---CCEEEEEEeecCCCCcccc
Q 012410 89 TKVIEIVAA--R-DIVFALAH---SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLK 159 (464)
Q Consensus 89 s~v~~~~~a--g-~~l~~l~~---~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~---g~~l~svSa~~sddfs~L~ 159 (464)
..|..+.+. | .++++.+. +|.+++|++.+++........|...|.++.|+|+ |..|+++ +.|
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~----~~d----- 89 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG----DFG----- 89 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE----ETT-----
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe----cCC-----
Confidence 456666665 4 56667766 9999999999999877766678889999999999 6999884 455
Q ss_pred eeeEEEEEeccCC-CCCcccceeeccccCceEE------EEeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEec------
Q 012410 160 CRSTKIEYIRRGK-PDSGFALFESESLKWPGFV------EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS------ 225 (464)
Q Consensus 160 ~~ti~l~~i~~G~-~~~~~~l~~~~~~~~~~~V------aFs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~------ 225 (464)
+++++|++.+++ +...+..+. ..+..+ +|+ |+|+.|++|+.|++|+|||+.+++ ++.++.
T Consensus 90 -g~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~s-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 90 -GNLHIWNLEAPEMPVYSVKGHK----EIINAIDGIGGLGIG-EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp -SCEEEECTTSCSSCSEEECCCS----SCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred -CeEEEEeCCCCCccEEEEEecc----cceEEEeeccccccC-CCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence 699999999988 544433333 233356 455 899999999999999999999987 666664
Q ss_pred CCCEeEEEE----eC--------CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc--CCCeEEEEeCCCeEEEEECC
Q 012410 226 DKHVQEIKI----RS--------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 226 ~~~V~~Vaf----s~--------s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~--~~~~lla~s~D~tIkIWDv~ 291 (464)
...|++++| +| +.|+.|++||+++++++....+ ...+.+++|+|. +++.+++++.|++|+|||++
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 137999994 44 3678999999999998766554 478899999984 46788889999999999999
Q ss_pred CCcEEEEcc-----cCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeC-CC-------------------ceEEEeccCCC
Q 012410 292 NAELMEVSR-----TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF-RG-------------------ELVTSFEDHLL 344 (464)
Q Consensus 292 tg~~l~~l~-----gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~-~G-------------------e~l~tl~gH~~ 344 (464)
+++++..+. +|...|.+++|+|+++ +|++++ |++|+|||+ .+ +++.++.+|..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ 322 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC
Confidence 988665544 9999999999999999 899999 999999998 33 57889999998
Q ss_pred CcCCCCeeEEEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 345 WHPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
. |.+++|+|||++|| |++. |++|+|||+.+.++|
T Consensus 323 ~-----v~~~~~s~~~~~l~~s~~~-----------d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 323 P-----ISSLDWSPDKRGLCVCSSF-----------DQTVRVLIVTKLNKI 357 (357)
T ss_dssp C-----EEEEEECSSSTTEEEEEET-----------TSEEEEEEECC----
T ss_pred C-----eeEEEEcCCCCeEEEEecC-----------CCcEEEEECCCcccC
Confidence 7 89999999999998 8886 999999999887653
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.9e-38 Score=301.31 Aligned_cols=269 Identities=12% Similarity=0.125 Sum_probs=224.5
Q ss_pred ccceEEEEec------cceeehhccCCeEEeeecccccEeeEeec----CCCceEEEEEEeeC----CCEEEEEEeecCC
Q 012410 88 RTKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRICFLNV----SPDEVIRSLFYNKN----NDSLITVSVYASD 153 (464)
Q Consensus 88 ~s~v~~~~~a------g~~l~~l~~~g~~~~~~~~~g~~l~~ln~----~~~~~i~Sv~fs~~----g~~l~svSa~~sd 153 (464)
..+|..+.+. ...+++.+.++.+++|+..+++.+..+.. .|...|.+++|+|+ |..|+++ +.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~----~~ 93 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA----GS 93 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE----ET
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe----cC
Confidence 3467777776 45677777788999999998998877753 25577999999999 6688883 45
Q ss_pred CCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEe-----cCC
Q 012410 154 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SDK 227 (464)
Q Consensus 154 dfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl-----~~~ 227 (464)
| ++++||++.++++...+..+. ..+..++|+ | +|++|++|+.|++|+|||+.+++++..+ +..
T Consensus 94 d------g~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 94 R------GIIRIINPITMQCIKHYVGHG----NAINELKFH-PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp T------CEEEEECTTTCCEEEEEESCC----SCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred C------CEEEEEEchhceEeeeecCCC----CcEEEEEEC-CCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence 5 799999999998765443333 445589997 7 9999999999999999999999999987 257
Q ss_pred CEeEEEEeCC--------CceeEEEEEcCCCcEEEEEee----------------------------CCcceeeEEEEcc
Q 012410 228 HVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYH----------------------------LLHRNKKVDFIEQ 271 (464)
Q Consensus 228 ~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~----------------------------~~~~~~~V~F~~~ 271 (464)
.|.+++|+|+ .|++|++||+.+++++.++.. +...+.+|+|+
T Consensus 163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 8999999884 688999999999987765543 66788999997
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcE--------------EEEcccCCCceEEEEEcCC--CcEEEEEe-CCeEEEEeC-CC
Q 012410 272 FNEKLLVKQENENLQILDVRNAEL--------------MEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNF-RG 333 (464)
Q Consensus 272 ~~~~lla~s~D~tIkIWDv~tg~~--------------l~~l~gh~~~v~sv~Fspd--gqllaS~s-D~TIklWd~-~G 333 (464)
++.+++++.|++|++||+.++++ +..+.+|...|++++|+|+ |++|++++ |++|++||+ +|
T Consensus 241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp -TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred -CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 47888899999999999999855 8889999999999999999 99999999 999999999 57
Q ss_pred c----eEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 334 E----LVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 334 e----~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
+ .+.++.+| ... |++++|+|||++||+++. ||+|+|||+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~s~~~-----------dg~i~iwd~~~ 366 (366)
T 3k26_A 320 DPHKAKCTTLTHHKCGAA-----IRQTSFSRDSSILIAVCD-----------DASIWRWDRLR 366 (366)
T ss_dssp SGGGCEEEEECCTTCCSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEEC--
T ss_pred CCccccceEEcccccCCc-----eEEEEeCCCCCeEEEEeC-----------CCEEEEEEecC
Confidence 6 45589998 455 899999999999999987 99999999864
No 88
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-36 Score=282.93 Aligned_cols=270 Identities=13% Similarity=0.186 Sum_probs=221.7
Q ss_pred ceEEEEec-cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 90 KVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 90 ~v~~~~~a-g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
.|..+.+. +++|++++.+|.+++|++.+++.+..+.. |...|.++.|+|+|+.|++++ .+ +.+++|++
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~d------g~i~~~~~ 88 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKELLLFGG----KD------TMINGVPL 88 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTTEEEEEE----TT------SCEEEEET
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCCEEEEec----CC------CeEEEEEe
Confidence 45555444 88999999999999999999998888855 788899999999999999944 45 68999998
Q ss_pred ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC---------C
Q 012410 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS---------S 237 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~---------s 237 (464)
...........+. .+...+..++| +++.|++++.|++|++|| +++++..+. ...|.+++|.| +
T Consensus 89 ~~~~~~~~~~~~~-~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 89 FATSGEDPLYTLI-GHQGNVCSLSF---QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp TCCTTSCC-CEEC-CCSSCEEEEEE---ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred eecCCCCcccchh-hcccCEEEEEe---cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 6654322111111 12233447888 467999999999999999 777777665 57899999976 3
Q ss_pred CceeEEEEEcCCCcEEEEEee-CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc
Q 012410 238 SHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~-~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq 316 (464)
.|++|++|| .++++.++.. +...+..++|+|. +.+++++.|++|++||+++++++..+.+|...|.+++|+|+|+
T Consensus 163 ~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 238 (313)
T 3odt_A 163 ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDD--GHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD 238 (313)
T ss_dssp TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC
T ss_pred CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCC--CeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC
Confidence 778999999 5788888885 6678899999995 5688899999999999999999999999999999999999995
Q ss_pred EEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 317 LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 317 llaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
|++++ |++|++||+ +|+++.++..|... |.+++|+|||+++ +++. ||+|+|||+.+++++
T Consensus 239 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~-~~~~-----------dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 239 -IVSCGEDRTVRIWSKENGSLKQVITLPAIS-----IWSVDCMSNGDII-VGSS-----------DNLVRIFSQEKSRWA 300 (313)
T ss_dssp -EEEEETTSEEEEECTTTCCEEEEEECSSSC-----EEEEEECTTSCEE-EEET-----------TSCEEEEESCGGGCC
T ss_pred -EEEEecCCEEEEEECCCCceeEEEeccCce-----EEEEEEccCCCEE-EEeC-----------CCcEEEEeCCCCcee
Confidence 77777 999999999 79999999999877 8999999999955 5665 999999999999887
Q ss_pred EEEc
Q 012410 395 AKIN 398 (464)
Q Consensus 395 ~tl~ 398 (464)
....
T Consensus 301 ~~~~ 304 (313)
T 3odt_A 301 SEDE 304 (313)
T ss_dssp C---
T ss_pred ehhh
Confidence 6543
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-39 Score=313.76 Aligned_cols=224 Identities=10% Similarity=0.072 Sum_probs=190.8
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCCCC--eEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCc---
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGT--- 251 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg--~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~--- 251 (464)
.+.+|+|+ |||++||+|+.|++|+|||+.++ +++.++. ...|.+|+|+|+ .|++|+|||+++++
T Consensus 13 ~v~~~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 13 PSYEHAFN-SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK 91 (377)
T ss_dssp CCSCCEEC-SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCC
T ss_pred cEEEEEEC-CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee
Confidence 34589997 89999999999999999999998 6777776 568999999984 68999999999998
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeE
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTV 326 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TI 326 (464)
++.++..|...+.+++|+| ++..+++++.|++|+|||+.+++ +++.+.+ |...|.+++|+|++++|++++ |++|
T Consensus 92 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp CEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred eeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence 6667776668899999999 46788889999999999999998 4778887 999999999999999999999 9999
Q ss_pred EEEeCC-------------------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 327 AVWNFR-------------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 327 klWd~~-------------------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
++||+. |+++.++ +|..+ |.+++|+|||++||+++. |++|+|||
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----v~~~~~sp~~~~l~~~~~-----------d~~i~iwd 233 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW-----VHAVGFSPSGNALAYAGH-----------DSSVTIAY 233 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS-----EEEEEECTTSSCEEEEET-----------TTEEC-CE
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCce-----EEEEEECCCCCEEEEEeC-----------CCcEEEEE
Confidence 999973 7788899 99988 899999999999999987 99999999
Q ss_pred CCCCeE----EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 388 ILTGKC----LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 388 i~tG~c----l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+.++++ +.++.+|.. .|++++|+|||+.|++|+.|+.+.+|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~~~~l~~~~~~~~~~~~~ 279 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQL----------------------------------PLRSLLWANESAIVAAGYNYSPILLQG 279 (377)
T ss_dssp ECSTTSCEEECCCEECSSS----------------------------------CEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred CCCCCCcceeeEeecCCCC----------------------------------ceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence 999998 899999986 899999999999999999888885543
No 90
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-36 Score=327.71 Aligned_cols=270 Identities=11% Similarity=0.126 Sum_probs=221.7
Q ss_pred ceEEEEec---cceeehhccCCeEEeeeccc-----ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 90 KVIEIVAA---RDIVFALAHSGVCAAFSRET-----NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 90 ~v~~~~~a---g~~l~~l~~~g~~~~~~~~~-----g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
.|..+.+. +++|++++.||++++|++.+ +.....+ .+|...|.+|.|+|+|+.|++ ++.| +
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s----gs~D------g 452 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSDGQFALS----GSWD------G 452 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTTSSEEEE----EETT------S
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCCCCEEEE----EeCC------C
Confidence 34455444 57999999999999999765 3455667 458999999999999999999 4456 7
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec------CCCEeEEEEe
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKIR 235 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~------~~~V~~Vafs 235 (464)
+++|||+.+|++...+..|+ ..+.+|+|+ |+|+.|+|||.|++|||||+.. .+..++. ...|.+++|+
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~----~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHT----KDVLSVAFS-LDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp EEEEEETTTTEEEEEEECCS----SCEEEEEEC-TTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEEC
T ss_pred cEEEEECCCCcceeEEeCCC----CCEEEEEEe-CCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEe
Confidence 99999999998754444333 334589997 8999999999999999999865 4444442 3569999998
Q ss_pred CC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 236 SS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 236 ~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
|+ .|++|+|||+.+++++.++.+|...+.+|+|+| ++..+++++.|++|+|||+++++++..+..+ ..
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~ 604 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SV 604 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCS-SC
T ss_pred CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCC-Cc
Confidence 74 588999999999999999998778999999999 4667777899999999999999999988766 57
Q ss_pred eEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCc--------------CCCCeeEEEECCCCCEEEEEecCC
Q 012410 306 PSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWH--------------PDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 306 v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~--------------~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
+.+++|+|++.+|++++|+.|+|||+ +++++.++..|.... .-..+.+++|||||++|+|||.
T Consensus 605 v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~-- 682 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT-- 682 (694)
T ss_dssp EEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET--
T ss_pred EEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC--
Confidence 99999999999999888889999999 699999887543210 0012678999999999999997
Q ss_pred CccccccCCCCeEEEEeCC
Q 012410 371 PEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~ 389 (464)
||+|+|||+.
T Consensus 683 ---------Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 ---------DGVIRVWGIG 692 (694)
T ss_dssp ---------TSEEEEEEC-
T ss_pred ---------CCeEEEEecc
Confidence 9999999984
No 91
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=290.43 Aligned_cols=277 Identities=10% Similarity=0.069 Sum_probs=236.6
Q ss_pred cccceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 87 ~~s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
-...|..+.+. |++|++.+.+|.+++|+..+++.+..+. .|...|.++.|+|+|+.|++++ .| ++++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~----~d------g~i~ 99 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGS----AD------YSIK 99 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----TT------TEEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEe----CC------CeEE
Confidence 34567777775 8899999999999999999999999994 5888899999999999999844 45 6999
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC-----CcEEEEeCCCCeEE-----------EEec--C
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTML-----------YSIS--D 226 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D-----~tiKlWdl~tg~~l-----------~tl~--~ 226 (464)
||++.+|++...+. +-..+..++|+ |+|+.|++++.| ++|++||+.++... ..+. .
T Consensus 100 iwd~~~~~~~~~~~-----~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-----SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEETTTCCEEEEEE-----CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEECCCCcEEEEee-----cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 99999998754333 22445589997 899999999999 99999999876432 1111 2
Q ss_pred C--CEeEEEEeCC--------CceeEEEEEcCC-CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE
Q 012410 227 K--HVQEIKIRSS--------SHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 295 (464)
Q Consensus 227 ~--~V~~Vafs~s--------~d~tIklWdi~t-G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~ 295 (464)
. .|..++|+|+ .|+.|++||+.+ ++++.++..+...+.+++|+| ++..|++++.|++|++||+.++++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCce
Confidence 2 7999999873 778999999999 899999997778899999999 466788889999999999999999
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEe-CC--------------eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC
Q 012410 296 MEVSRTEFMTPSAFIFLYENQLFLTFR-NR--------------TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD 359 (464)
Q Consensus 296 l~~l~gh~~~v~sv~FspdgqllaS~s-D~--------------TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD 359 (464)
+..+. +...+.+++|+|+++++++++ ++ +|++||. +++++.++.+|... |.+++|+||
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----v~~~~~s~~ 326 (369)
T 3zwl_B 253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP-----LNTVAISPQ 326 (369)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSC-----EEEEEECTT
T ss_pred eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCc-----EEEEEECCC
Confidence 99888 557899999999999999999 87 8999999 79999999999988 899999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
|++||+++. ||+|+|||+.++.....+.
T Consensus 327 ~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 327 GTSYASGGE-----------DGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp SSEEEEEET-----------TSEEEEEEECHHHHTCCCH
T ss_pred CCEEEEEcC-----------CCeEEEEECccccchhHHH
Confidence 999999987 9999999998877655443
No 92
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=293.95 Aligned_cols=227 Identities=13% Similarity=0.186 Sum_probs=195.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCC--CCeEEEEec--CCCEeEEEEeC----------CCceeEEEEEcCCCc
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS--DKHVQEIKIRS----------SSHVPLKILSIEDGT 251 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~--tg~~l~tl~--~~~V~~Vafs~----------s~d~tIklWdi~tG~ 251 (464)
..+.+++|+ |||++||+|+.|++|+|||+. +++++.++. ...|.+|+|+| +.|++|+|||+++|+
T Consensus 12 ~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 12 ELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 90 (379)
T ss_dssp CCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred ccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence 445589997 899999999999999999998 667777776 46899999974 267899999999998
Q ss_pred --EEEEEeeCCcceeeEEEEccC-CCeEEEEeCCCeEEEEECCCCc--EEEEcccCCCceEEEEEcC-------------
Q 012410 252 --VLKVFYHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY------------- 313 (464)
Q Consensus 252 --~l~tl~~~~~~~~~V~F~~~~-~~~lla~s~D~tIkIWDv~tg~--~l~~l~gh~~~v~sv~Fsp------------- 313 (464)
++..+..+...+.+++|+|.. +..+++++.|++|++||+.+++ ....+.+|...|.+++|+|
T Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 170 (379)
T 3jrp_A 91 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 170 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------C
T ss_pred eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCC
Confidence 777777667889999999853 5678889999999999999984 4456788999999999999
Q ss_pred CCcEEEEEe-CCeEEEEeC-CCc----eEEEeccCCCCcCCCCeeEEEECCC---CCEEEEEecCCCccccccCCCCeEE
Q 012410 314 ENQLFLTFR-NRTVAVWNF-RGE----LVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKAEPEDQWMEGSAGSIN 384 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~-~Ge----~l~tl~gH~~~~~~~~v~svafSpD---g~~LaSgs~~~~~~~~~~s~DgtIk 384 (464)
|+++|++++ |++|+|||+ +++ ++.++.+|... |.+++|+|| +++||+++. ||+|+
T Consensus 171 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~-----v~~~~~sp~~~~~~~l~s~~~-----------dg~i~ 234 (379)
T 3jrp_A 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYLASVSQ-----------DRTCI 234 (379)
T ss_dssp TTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEET-----------TSCEE
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc-----EeEEEECCCCCCCCeEEEEeC-----------CCEEE
Confidence 799999999 999999998 454 67899999988 899999999 999999987 99999
Q ss_pred EEeCCCCe---EEEEEc--cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 385 VSSILTGK---CLAKIN--ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 385 lWdi~tG~---cl~tl~--gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
|||+.+++ ....+. +|.. .|++++|+|||+.||+|+.||+|
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~----------------------------------~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPD----------------------------------VLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSS----------------------------------CEEEEEECSSSCCEEEEESSSSE
T ss_pred EEeCCCCCccceeeeeccccCCC----------------------------------cEEEEEEcCCCCEEEEecCCCcE
Confidence 99999874 222222 2443 89999999999999999999999
Q ss_pred Eecc
Q 012410 460 HVWS 463 (464)
Q Consensus 460 rlWd 463 (464)
++|+
T Consensus 281 ~iw~ 284 (379)
T 3jrp_A 281 TLWK 284 (379)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9997
No 93
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.9e-37 Score=295.73 Aligned_cols=274 Identities=9% Similarity=0.108 Sum_probs=227.3
Q ss_pred cceEEEEec--cceeehhccCCeEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
.+|..+.+. |++|++.+.+|.+++|+..+++ .+..+. .|...|.+++|+|+|+.|++++ .| ++++
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~----~d------g~i~ 77 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCG----TD------RNAY 77 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEE----TT------SCEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEc----CC------CeEE
Confidence 455556655 8899999999999999988887 888885 4888899999999999999944 55 6999
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE---EEEec---CCCEeEEEEeCC-
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS---DKHVQEIKIRSS- 237 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~---l~tl~---~~~V~~Vafs~s- 237 (464)
+|++.++++.....+.. +...+.+++|+ |+|++|++|+.|++|++||+.+++. ...+. ...|.+++|+|+
T Consensus 78 vwd~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILR--INRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEEEETTEEEEEEECCC--CSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred EEECCCCeeeeeEEeec--CCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 99998887533222222 22445589997 8999999999999999999998873 34442 467999999884
Q ss_pred -------CceeEEEEEc------------------CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC
Q 012410 238 -------SHVPLKILSI------------------EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 292 (464)
Q Consensus 238 -------~d~tIklWdi------------------~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t 292 (464)
.|++|++||+ .+|+++.++..+...+.+++|+| ++..+++++.|++|++||+++
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC
Confidence 6789999994 58999999987768899999998 466788899999999999999
Q ss_pred CcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-C--Cc--eE-------------------------------
Q 012410 293 AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-R--GE--LV------------------------------- 336 (464)
Q Consensus 293 g~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~--Ge--~l------------------------------- 336 (464)
++++..+.+|...|.+++|+|+|++|++++|++|++||+ + |+ ++
T Consensus 234 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 234 KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp TTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred CceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 999999999999999999999999999888999999999 5 42 11
Q ss_pred -----EEe-ccCCCCcCCCCeeEEE-ECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 337 -----TSF-EDHLLWHPDCNTNNIY-ITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 337 -----~tl-~gH~~~~~~~~v~sva-fSpDg---~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
..+ .+|... |++++ +++|| ++||||+. ||+|+|||+.+++.
T Consensus 314 ~~~~~~~~~~~h~~~-----v~~~~~~~~~g~~~~~l~s~~~-----------Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNS-----VSQISVLSGGKAKCSQFCTTGM-----------DGGMSIWDVRSLES 364 (372)
T ss_dssp -----CCCSSSSSSC-----EEEEEEEESTTTSCSEEEEEET-----------TSEEEEEEHHHHHH
T ss_pred CccccccccccccCC-----cceeEEecCCCcceeeEEEecC-----------CCceEEEEecChhH
Confidence 233 488887 89998 45788 99999997 99999999987653
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-37 Score=333.02 Aligned_cols=295 Identities=9% Similarity=0.027 Sum_probs=227.2
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..|..+-++ |.+||+.+.|++++ +..+++ .++ +|...|++|+|+|+| .+ ++ |
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~-gh~~~v~~V~FsPdg----------~~-------~~---~ 69 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DIN-CNSKNLFHVKEFPLE----------FE-------NK---L 69 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCS-SBGGGTEEEEEECCC----------CC-------CT---T
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccccc---eec-CCCccEEEEEECCCC----------Cc-------ce---E
Confidence 355566666 99999999999999 645554 554 688889999999999 12 34 4
Q ss_pred EeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC------CEeEEEEeCC---
Q 012410 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------HVQEIKIRSS--- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~------~V~~Vafs~s--- 237 (464)
++.+++....+.+ .+..++.+|+|| |||+.||+++.|++|+|||.++ ++.++..+ .|.+|+|||+
T Consensus 70 ~~~~~~~~~~~~~---~~~~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 70 DFELAQQNGLLNS---QPVCYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp TTSCCCSSCSSTT---SCSCCEEEEEEC-SSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSC
T ss_pred EEEeCCCceEeec---CCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCE
Confidence 4444443322221 112556699998 8999999999999999999655 77666522 3999999994
Q ss_pred -----CceeEEEEEcCCCc-------EEEEEe----eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE---EEE
Q 012410 238 -----SHVPLKILSIEDGT-------VLKVFY----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL---MEV 298 (464)
Q Consensus 238 -----~d~tIklWdi~tG~-------~l~tl~----~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~---l~~ 298 (464)
.|++|+|||+++|. .+.++. +|..+|.+|+|+|+ + +++++.|++||+||+.++++ .++
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd--g-Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED--V-LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT--E-EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC--c-EEEEeCCCeEEEEECCCCccccceee
Confidence 78999999999986 478884 44579999999995 4 88899999999999999884 356
Q ss_pred c-ccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEec-cCCCCcCCCCeeEEEE--CCCCCEEEEEecCCCccc
Q 012410 299 S-RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYI--TSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 299 l-~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~-gH~~~~~~~~v~svaf--SpDg~~LaSgs~~~~~~~ 374 (464)
+ .+|...|.+++|+ |+.||+++|++|+|||+.+..+.++. ||... |++|+| +|||+.|+++++
T Consensus 221 L~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~-----V~~va~~~s~d~~~La~a~e------ 287 (588)
T 2j04_A 221 IQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLEN-----FHIIPLNHEKESTILLMSNK------ 287 (588)
T ss_dssp EECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSC-----CCEEEETTCSSCEEEEECSS------
T ss_pred ecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCce-----EEEEEeeeCCCCCEEEEEcC------
Confidence 7 4888999999999 69999999999999999655553444 99998 889999 999999999986
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccccc------CEEEEEEcCCCC
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE------DITSLFYDEERN 448 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~V~slafspDg~ 448 (464)
||+ |||.... ++ +. +++...|+ .+.+.++|+...+.+. .|++|+|||||+
T Consensus 288 -----dG~-klw~~d~---~~-~s------------pd~~l~a~--~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 288 -----TSY-KVLLEDE---LH-VT------------ADNIIAPY--LEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGY 343 (588)
T ss_dssp -----CEE-EEEESSS---EE-EE------------CCCSSHHH--HHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSS
T ss_pred -----CCC-EEEeecc---EE-EC------------CCceEEEE--cCCEEEEEECCCCceeeeccceEEEEEEECCCCC
Confidence 999 9999752 22 22 22333333 3777778876543333 699999999999
Q ss_pred EEEEeeC
Q 012410 449 EIYTGNR 455 (464)
Q Consensus 449 ~LaSgs~ 455 (464)
+||+++.
T Consensus 344 ~lA~~~~ 350 (588)
T 2j04_A 344 SIAIVYD 350 (588)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999974
No 95
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-36 Score=299.69 Aligned_cols=268 Identities=13% Similarity=0.135 Sum_probs=217.8
Q ss_pred cceEEEEec--c-ceeehhccCCeEEeeecccccEeeEeec-CCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeE
Q 012410 89 TKVIEIVAA--R-DIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 89 s~v~~~~~a--g-~~l~~l~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti 163 (464)
..|..+.+. | ++|++++.+|.+++|++.+++..+.+.. +|...|.++.|+| ++..|+++ +.| +++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~d------~~i 143 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS----SIR------GAT 143 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE----ETT------TEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE----eCC------CEE
Confidence 455666655 5 7999999999999999999998888863 6889999999999 77888884 455 699
Q ss_pred EEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC----
Q 012410 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---- 237 (464)
Q Consensus 164 ~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---- 237 (464)
+||++.. +....+..+. .+...+.+++|+ |+|++|++|+.|++|++||+ +++++.++. ...|.+|+|+|+
T Consensus 144 ~iwd~~~-~~~~~~~~~~-~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 144 TLRDFSG-SVIQVFAKTD-SWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEETTS-CEEEEEECCC-CSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEECCC-CceEEEeccC-CCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 9999874 3322222111 112345589998 89999999999999999999 688888776 578999999884
Q ss_pred -----CceeEEEEEcCC----CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-----
Q 012410 238 -----SHVPLKILSIED----GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF----- 303 (464)
Q Consensus 238 -----~d~tIklWdi~t----G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~----- 303 (464)
.|++|+|||+.+ ++++.++. +...+.+++|+|.++..+++++.|++|+|||+++++++..+.+|.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 578999999998 88999885 458899999999446777888999999999999999888777664
Q ss_pred ------------CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCC--CCcCCCCeeEEEECCCCCEEEEEe
Q 012410 304 ------------MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 304 ------------~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~--~~~~~~~v~svafSpDg~~LaSgs 367 (464)
..+..++|+|||++ +++ |++|+|||+ +|+++.+|.+|. .. +..++|+|||++||+|+
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~-----~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGI-----ISLNKFSPTGDVLASGM 371 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSC-----CCEEEECTTSSEEEEEE
T ss_pred cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCce-----EEEEEEecCccEEEEec
Confidence 23445778888887 777 999999999 799999999864 33 66789999999999996
Q ss_pred cCCCccccccCCCCeEEEEeCCC
Q 012410 368 KAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|++|+|||+.+
T Consensus 372 ------------d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 ------------GFNILIWNRED 382 (383)
T ss_dssp ------------TTEEEEEECC-
T ss_pred ------------CCcEEEEecCC
Confidence 89999999864
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-36 Score=300.52 Aligned_cols=273 Identities=10% Similarity=0.111 Sum_probs=222.4
Q ss_pred EEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC
Q 012410 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (464)
Q Consensus 94 ~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~ 173 (464)
+-..++.+++.+.+|.+++|+..+|+.+..+...|...|.+++|+|+|+.|++++ .+ ++++||++.+++.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~----~d------g~i~iwd~~~~~~ 168 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL----GN------GLVDIYDVESQTK 168 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE----TT------SCEEEEETTTCCE
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC----CC------CeEEEEECcCCeE
Confidence 4445566778889999999999999999999888899999999999999999944 45 6999999999987
Q ss_pred CCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-CCeEEEEec--CCCEeEEEEeCC--------CceeE
Q 012410 174 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS--DKHVQEIKIRSS--------SHVPL 242 (464)
Q Consensus 174 ~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-tg~~l~tl~--~~~V~~Vafs~s--------~d~tI 242 (464)
...+..+. ..+.+++|+ +++|++|+.|++|++||+. .+..+.++. ...|.+++|+|+ .|++|
T Consensus 169 ~~~~~~~~----~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 169 LRTMAGHQ----ARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp EEEECCCS----SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEecCCC----CceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 65444333 334478884 5799999999999999999 456666665 578999999884 67999
Q ss_pred EEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-Ee--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 243 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 243 klWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
++||+.+++++.++..+...+.+++|+|. +..+++ ++ .|++|++||+.+++++..+.++ ..+.+++|+|+|+.|+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~-~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPW-QSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTT-STTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SCEEEEEECSSSSEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCC-CCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-CcEEEEEECCCCCeEE
Confidence 99999999999999877788999999995 445555 44 7999999999999999988754 6799999999999999
Q ss_pred E--Ee-CCeEEEEeC-CCceEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 320 T--FR-NRTVAVWNF-RGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 320 S--~s-D~TIklWd~-~Ge~l~--tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+ ++ |++|+|||+ ++++.. .+.+|... |.+++|+|||++|++++. ||+|+|||+.+|++
T Consensus 320 ~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~~~-----------dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR-----VLYSALSPDGRILSTAAS-----------DENLKFWRVYDGDH 383 (401)
T ss_dssp EEECTTTCEEEEEEEETTEEEEEEEEECCSSC-----CCEEEECTTSSEEEEECT-----------TSEEEEEECCC---
T ss_pred EEeecCCCcEEEEecCCccceeEEEecCCCCC-----EEEEEECCCCCEEEEEeC-----------CCcEEEEECCCCcc
Confidence 9 55 999999999 676655 47799887 889999999999999986 99999999999999
Q ss_pred EEEEccCC
Q 012410 394 LAKINATN 401 (464)
Q Consensus 394 l~tl~gh~ 401 (464)
+.....+.
T Consensus 384 ~~~~~~~~ 391 (401)
T 4aez_A 384 VKRPIPIT 391 (401)
T ss_dssp --------
T ss_pred cccccccc
Confidence 98765544
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.1e-36 Score=283.58 Aligned_cols=259 Identities=10% Similarity=0.148 Sum_probs=210.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
+++||++ .|+++++||+.+|+.++.+.. .|...|.+|+|+|+|+.|++ ++.| ++++||++++|++...
T Consensus 36 ~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s----gs~D------g~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV----GTSS------AEVQLWDVQQQKRLRN 104 (318)
T ss_dssp TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE----EETT------SEEEEEETTTTEEEEE
T ss_pred CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE----EECC------CcEEEeecCCceeEEE
Confidence 5777765 589999999999999998864 57788999999999999999 4566 7999999999997654
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEEec--CCCEeEEEEeC--------CCceeEEEE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS--DKHVQEIKIRS--------SSHVPLKIL 245 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~tl~--~~~V~~Vafs~--------s~d~tIklW 245 (464)
+..++.. ..+++ +++++|++|+.|+++++|+..++.. +.++. ...+..+++++ +.|++|+||
T Consensus 105 ~~~h~~~------~~~~~-~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 105 MTSHSAR------VGSLS-WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EECCSSC------EEEEE-EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ecCccce------EEEee-cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 4433321 34454 6789999999999999999987654 44554 56788898876 478999999
Q ss_pred EcCCCcEE----EEEeeCCcceeeEEEEccCCCeEEE--EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEE
Q 012410 246 SIEDGTVL----KVFYHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 319 (464)
Q Consensus 246 di~tG~~l----~tl~~~~~~~~~V~F~~~~~~~lla--~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqlla 319 (464)
|+++|+.. .....+...+..++|.+..+..+.. ++.|++|+|||..++++...... ...+..+.|+|+++.++
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELI 256 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceE
Confidence 99998754 3333445678999998864443333 45899999999999998877654 46788999999999887
Q ss_pred EE--e-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 320 TF--R-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 320 S~--s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
++ + |++|+|||+ +|+++++|++|... |++++|+|||++|||||. ||+|||||+.+.
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~-----V~~l~~spdg~~l~S~s~-----------D~~v~iWd~~~~ 316 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAA-----------DETLRLWRCFEL 316 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TTEEEEECCSCC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEec-----------CCeEEEEECCCC
Confidence 64 3 999999999 69999999999998 899999999999999997 999999998654
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=292.08 Aligned_cols=307 Identities=10% Similarity=0.075 Sum_probs=217.2
Q ss_pred ccceEEEEe---ccceeehhccCCeEEeeecccccEeeEee------------cCCCceEEEEEEee-CCCEEEEEEeec
Q 012410 88 RTKVIEIVA---ARDIVFALAHSGVCAAFSRETNRRICFLN------------VSPDEVIRSLFYNK-NNDSLITVSVYA 151 (464)
Q Consensus 88 ~s~v~~~~~---ag~~l~~l~~~g~~~~~~~~~g~~l~~ln------------~~~~~~i~Sv~fs~-~g~~l~svSa~~ 151 (464)
..+|..+.+ .|++|++++.+|.+++|++.+++.+..+. ..|...|.++.|+| ++..|+++
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---- 118 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS---- 118 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE----
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE----
Confidence 346666766 47999999999999999999988877765 35888999999999 77788883
Q ss_pred CCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC---CCcEEEEecCCCcEEEEeCCCCeEEEEec--C
Q 012410 152 SDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV---NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 226 (464)
Q Consensus 152 sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p---dGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~ 226 (464)
+.| +++++|++.+++....+. +...+..++|+ | ++.+|++|+.|++|++||+.+++++.++. .
T Consensus 119 ~~d------~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 119 SFD------KTLKVWDTNTLQTADVFN-----FEETVYSHHMS-PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp ETT------SEEEEEETTTTEEEEEEE-----CSSCEEEEEEC-SSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred eCC------CeEEEeeCCCCccceecc-----CCCceeeeEee-cCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 455 699999999888643222 22344578886 5 55599999999999999999999998886 5
Q ss_pred CCEeEEEEeCC---------CceeEEEEEcCCCc-EEEEE---------------eeCCcceeeEEEEccCCCeEEEEeC
Q 012410 227 KHVQEIKIRSS---------SHVPLKILSIEDGT-VLKVF---------------YHLLHRNKKVDFIEQFNEKLLVKQE 281 (464)
Q Consensus 227 ~~V~~Vafs~s---------~d~tIklWdi~tG~-~l~tl---------------~~~~~~~~~V~F~~~~~~~lla~s~ 281 (464)
..|.+++|+|+ .|++|++||+.+++ ++..+ ..+...+.+++|+| ++..+++++.
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 265 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGT 265 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEET
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecC
Confidence 68999999884 67899999999876 55665 34556789999999 4667888999
Q ss_pred CCeEEEEECCCCcEEEEcccCC------CceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEE
Q 012410 282 NENLQILDVRNAELMEVSRTEF------MTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~gh~------~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
|++|++||+.+++.+..+.++. .....+...+.+.+++++.|++|++||+ +|+++.++.+|... |.++
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----v~~~ 340 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT-----VDCC 340 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC-----EEEE
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe-----EEEE
Confidence 9999999999999876554432 1222333344555555545999999999 79999999999987 8999
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 434 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (464)
+|+|||++||+++. ||+|+|||+.+++++.....+..
T Consensus 341 ~~s~~~~~l~s~~~-----------dg~i~iw~~~~~~~~~~~~~~~~-------------------------------- 377 (408)
T 4a11_B 341 VFQSNFQELYSGSR-----------DCNILAWVPSLYEPVPDDDETTT-------------------------------- 377 (408)
T ss_dssp EEETTTTEEEEEET-----------TSCEEEEEECC--------------------------------------------
T ss_pred EEcCCCCEEEEECC-----------CCeEEEEeCCCCCccCCCCceEe--------------------------------
Confidence 99999999999987 99999999999998887655542
Q ss_pred ccCEEEEEEcC-CCCEEEEeeCCCcEEeccC
Q 012410 435 LEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 435 l~~V~slafsp-Dg~~LaSgs~DgtVrlWd~ 464 (464)
. ..++| +.....+.+.|+.|++|+|
T Consensus 378 ---~--~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 378 ---K--SQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp -------------------------------
T ss_pred ---c--cccccccceeecccCccCceeecCC
Confidence 0 11222 3445567788999999986
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=304.34 Aligned_cols=239 Identities=10% Similarity=0.152 Sum_probs=192.1
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-----------EEEEecC--------------CCEeEEEEeCC---
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----------MLYSISD--------------KHVQEIKIRSS--- 237 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-----------~l~tl~~--------------~~V~~Vafs~s--- 237 (464)
..+.+|+|+ |||++||+|+.|++|+|||+.+++ ++.++.. ..|.+|+|+|+
T Consensus 29 ~~V~~v~~s-~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 29 DIISTVEFN-HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GSEEEEEEC-SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred CcEEEEEEC-CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 455699997 899999999999999999999887 5666653 45999999874
Q ss_pred -------CceeEEEEEcCCCcEE---------------------------------------EEE-eeCCcceeeEEEEc
Q 012410 238 -------SHVPLKILSIEDGTVL---------------------------------------KVF-YHLLHRNKKVDFIE 270 (464)
Q Consensus 238 -------~d~tIklWdi~tG~~l---------------------------------------~tl-~~~~~~~~~V~F~~ 270 (464)
.|++|+|||+.++++. +.+ .+|...+.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 5789999999886653 233 35667889999999
Q ss_pred cCCCeEEEEeCCCeEEEEECC-CCcEEE-------EcccCCCceEEEEEcCCC-cEEEEEe-CCeEEEEeC-CCce----
Q 012410 271 QFNEKLLVKQENENLQILDVR-NAELME-------VSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGEL---- 335 (464)
Q Consensus 271 ~~~~~lla~s~D~tIkIWDv~-tg~~l~-------~l~gh~~~v~sv~Fspdg-qllaS~s-D~TIklWd~-~Ge~---- 335 (464)
+ +..++++ .|++|+|||+. .+++++ .+.+|...|.+++|+|+| ++|++++ |++|+|||+ ++++
T Consensus 188 ~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 188 D-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp T-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred C-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 4 5566666 89999999999 566776 367899999999999999 9999999 999999999 6887
Q ss_pred EEEeccCCC------------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCC
Q 012410 336 VTSFEDHLL------------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNC 402 (464)
Q Consensus 336 l~tl~gH~~------------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~ 402 (464)
+.+|++|.. . |.+++|+|||++|++++ +++|+|||+.+ ++++.++.+|..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~~------------~~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISS-----ISDVKFSHSGRYMMTRD------------YLSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp CEEECCC-----CCHHHHHTTC-----EEEEEECTTSSEEEEEE------------SSEEEEEETTCCSSCSCCEESCGG
T ss_pred eeEeccCCCccccccccccCce-----EEEEEECCCCCEEEEee------------CCeEEEEeCCCCccccceeecccc
Confidence 899999986 5 89999999999999986 59999999998 999999999964
Q ss_pred CCCcccccCCCCCCccccccccccccc-cccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRS-TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
... .+.. ........+.+++|+|||+.|++|+.||+|+|||.
T Consensus 329 ~~~--------------------~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 329 LRS--------------------KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp GTT--------------------THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred ccc--------------------cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 100 0000 00011124556999999999999999999999984
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.6e-37 Score=313.32 Aligned_cols=273 Identities=12% Similarity=0.134 Sum_probs=210.4
Q ss_pred ceEEEEec---cceeehhccCCeEEeeecccccEeeEee-cCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEE
Q 012410 90 KVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLN-VSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 90 ~v~~~~~a---g~~l~~l~~~g~~~~~~~~~g~~l~~ln-~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
.|..+.+. +++||+++.||.|++||+.+++..+.+. .+|...|.+|.|+| ++..|++ ++.| ++++
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s----~s~D------~~v~ 190 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYA----SSME------GTTR 190 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEE----ECSS------SCEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEE----EeCC------CEEE
Confidence 36666664 6799999999999999988887666554 36889999999998 6889998 4566 7999
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-----
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS----- 237 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s----- 237 (464)
|||++++.+.. +.... ....+..+++|+ |+|++|++|+.|++|+|||+. ++++.++. ...|.+|+|+|.
T Consensus 191 iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 191 LQDFKGNILRV-FASSD-TINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp EEETTSCEEEE-EECCS-SCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred EeeccCCceeE-EeccC-CCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence 99987655421 11111 122344589998 899999999999999999985 56666655 578999999873
Q ss_pred ----CceeEEEEEcCCCcEEEEEe---eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC------
Q 012410 238 ----SHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM------ 304 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~---~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~------ 304 (464)
.|++|+|||+.+++....+. .|...|.+|+|+| ++..|++++.|++|+|||+.++++...+.+|..
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEecccccccccc
Confidence 78999999999887665543 4557889999998 467888899999999999999999988877653
Q ss_pred ceEEEEEcCCCcEEEEEe-------------CCeEEEEeC-CCceEEEec-cCCCCcCCCCeeEE-EECCCCCEEEEEec
Q 012410 305 TPSAFIFLYENQLFLTFR-------------NRTVAVWNF-RGELVTSFE-DHLLWHPDCNTNNI-YITSDQDLIISYCK 368 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-------------D~TIklWd~-~Ge~l~tl~-gH~~~~~~~~v~sv-afSpDg~~LaSgs~ 368 (464)
.+....|+|++.++++++ +++|+|||. +|+++.++. +|... |.++ +|||||++||||+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~-----v~s~~~fspdg~~lasg~- 419 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSG-----ISSLNEFNPMGDTLASAM- 419 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCC-----CCCEEEECTTSSCEEEEC-
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCc-----EEEEEEECCCCCEEEEEc-
Confidence 233455666666666553 368999999 799999875 56666 5666 7999999999986
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEE
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
|++|+|||+++|++.
T Consensus 420 -----------d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 -----------GYHILIWSQQEARTR 434 (435)
T ss_dssp -----------SSEEEECCCC-----
T ss_pred -----------CCcEEEEECCcCeee
Confidence 789999999999874
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-35 Score=300.05 Aligned_cols=267 Identities=11% Similarity=0.150 Sum_probs=221.4
Q ss_pred cceEEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 89 TKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
..|..+.+.|++|++++.+|.+++||..+++.+..+. +|...|.++.| +|+.|++ ++.| +++++|++
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s----g~~d------g~i~vwd~ 200 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIIT----GSSD------STVRVWDV 200 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEE----EETT------SCEEEEES
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEE----EcCC------CeEEEEEC
Confidence 3466666679999999999999999999999999994 58888999999 7889988 4455 79999999
Q ss_pred ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEE---EEec--CCCEeEEEEeC------C
Q 012410 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSIS--DKHVQEIKIRS------S 237 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l---~tl~--~~~V~~Vafs~------s 237 (464)
.+|++...+..+. ..+.+++|+ +..|++|+.|++|++||+.+++.+ ..+. ...|.+++|.+ +
T Consensus 201 ~~~~~~~~~~~h~----~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 273 (435)
T 1p22_A 201 NTGEMLNTLIHHC----EAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 273 (435)
T ss_dssp SSCCEEEEECCCC----SCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEcCCC----CcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEe
Confidence 9999865544443 334478885 359999999999999999988765 3443 56799999854 5
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcE
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 317 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgql 317 (464)
.|++|++||+++|+++.++.++...+.+++|. +..+++++.|++|+|||+++++++.++.+|...|.+++| ++++
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred CCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCE
Confidence 89999999999999999999777888999884 478888999999999999999999999999999999988 8999
Q ss_pred EEEEe-CCeEEEEeC-CCc---------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 318 FLTFR-NRTVAVWNF-RGE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 318 laS~s-D~TIklWd~-~Ge---------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
|++++ |++|+|||+ +++ ++.++.+|... |.+++| ||++|+||+. ||+|+||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~--~~~~l~s~s~-----------Dg~i~iw 410 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-----VFRLQF--DEFQIVSSSH-----------DDTILIW 410 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-----CCCEEE--CSSCEEECCS-----------SSEEEEE
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC-----eEEEEe--CCCEEEEEeC-----------CCEEEEE
Confidence 99999 999999998 566 99999999998 788998 8999999986 9999999
Q ss_pred eCCCCeEEEEEc
Q 012410 387 SILTGKCLAKIN 398 (464)
Q Consensus 387 di~tG~cl~tl~ 398 (464)
|+.++.......
T Consensus 411 d~~~~~~~~~~~ 422 (435)
T 1p22_A 411 DFLNDPAAQAEP 422 (435)
T ss_dssp C-----------
T ss_pred ECCCCCCcccCC
Confidence 998887665543
No 102
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.4e-35 Score=285.17 Aligned_cols=249 Identities=11% Similarity=0.049 Sum_probs=190.5
Q ss_pred cceEEEEec--cceeehhccCCeEEeeeccc--ccEeeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCCcccceee
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRET--NRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRS 162 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~--g~~l~~ln~~~~~~i~Sv~fs~~--g~~l~svSa~~sddfs~L~~~t 162 (464)
..|..+.+. |++|++++.||++++|++.+ ++++.++ .+|...|++|.|+|+ |+.|++ ++.| ++
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s----~s~D------~~ 78 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILAS----CSYD------GK 78 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEE----EETT------TE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEE----EcCC------CE
Confidence 356666665 99999999999999999764 4778888 559999999999864 899999 4466 79
Q ss_pred EEEEEeccCCCCCcccceeeccccCceEEEEeCCC--CcEEEEecCCCcEEEEeCCCCeE--EEEe--cCCCEeEEEEeC
Q 012410 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTM--LYSI--SDKHVQEIKIRS 236 (464)
Q Consensus 163 i~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd--Gk~LaSgs~D~tiKlWdl~tg~~--l~tl--~~~~V~~Vafs~ 236 (464)
++||++.+|+...... +. .+...+.+|+|+ |+ |++|++|+.|++|+|||+.++.. ...+ +...|.+++|+|
T Consensus 79 v~iWd~~~~~~~~~~~-~~-~h~~~v~~v~~~-p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAV-HA-VHSASVNSVQWA-PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (297)
T ss_dssp EEEEEBSSSCBCCCEE-EC-CCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred EEEEEcCCCceEEEEE-ee-cCCCceeEEEeC-cCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence 9999999886422111 11 122345589997 77 89999999999999999987632 2233 356788888888
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc----EEEEcccCCCceEEEEEc
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~----~l~~l~gh~~~v~sv~Fs 312 (464)
+.... .+. + . .+.++..|++++.|++|+|||+++++ ++.++.+|...|.+++|+
T Consensus 156 ~~~~~-------~~~------~--~-------~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 156 ATIEE-------DGE------H--N-------GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp CC----------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred Ccccc-------ccc------C--C-------CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC
Confidence 63211 010 0 0 01124577779999999999999887 778999999999999999
Q ss_pred CCC---cEEEEEe-CCeEEEEeCC-Cc---eEEEe--ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 313 YEN---QLFLTFR-NRTVAVWNFR-GE---LVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 313 pdg---qllaS~s-D~TIklWd~~-Ge---~l~tl--~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
|++ ++|||++ |++|+|||++ ++ ....+ .+|..+ |++++|+|||++||+++. |++
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~las~~~-----------D~~ 277 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNK 277 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEET-----------TSC
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc-----EEEEEECCCCCEEEEEcC-----------CCc
Confidence 995 8999999 9999999984 32 23345 567666 899999999999999987 999
Q ss_pred EEEEeCC
Q 012410 383 INVSSIL 389 (464)
Q Consensus 383 IklWdi~ 389 (464)
|+||+..
T Consensus 278 v~lw~~~ 284 (297)
T 2pm7_B 278 VTLWKEN 284 (297)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999976
No 103
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.6e-34 Score=282.14 Aligned_cols=268 Identities=12% Similarity=0.112 Sum_probs=222.9
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
+-++++.+.++.+++||..+|+.+..+.. |.. +.+++|+|+|+.|+.++ +.+ +++++||+.+|++...+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~-~~~-~~~~~~s~dg~~l~~~~---~~d------~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPV-GSN-PMGAVISPDGTKVYVAN---AHS------NDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEEC-SSS-EEEEEECTTSSEEEEEE---GGG------TEEEEEETTTTEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeec-CCC-cceEEECCCCCEEEEEC---CCC------CeEEEEECCCCeEEEEE
Confidence 35677888999999999999999999854 555 89999999999875533 334 69999999999875332
Q ss_pred cceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILS 246 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWd 246 (464)
.. -..+..++|+ |||+.| ++++.|++|++||+.+++++..+. ...+.+++|+|+ .+++|++||
T Consensus 71 ~~-----~~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 71 PA-----GSSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EC-----SSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EC-----CCCccceEEC-CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 21 1356689997 899977 466678999999999999998776 567999999874 578999999
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe---
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--- 322 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--- 322 (464)
+.+|+++.++..+ ..+..++|+|+ +..+++ ++.|++|++||+++++++..+..+ ..+.+++|+|+|+.|++++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 145 TVTKAVINTVSVG-RSPKGIAVTPD-GTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECS
T ss_pred CCCCcEEEEEecC-CCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCeEEEEEecC-CCccceEECCCCCEEEEEecCc
Confidence 9999999999854 55689999984 556644 568999999999999999888755 5789999999999888775
Q ss_pred -CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 323 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 323 -D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L-aSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
|++|++||+ +|+++.++..|.. +.+++|+|||++| ++++. |++|++||+.+|++++++..
T Consensus 222 ~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~s~~~-----------d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 222 YFNTVSMIDTGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSF-----------XNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp SCCEEEEEETTTTEEEEEEECCSS------EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEEC
T ss_pred CCCcEEEEECCCCeEEEEEecCCC------ccEEEEccCCCEEEEEcCC-----------CCEEEEEECCCCcEEEEEEC
Confidence 789999999 6999999998864 6789999999988 56554 99999999999999999998
Q ss_pred CCC
Q 012410 400 TNC 402 (464)
Q Consensus 400 h~~ 402 (464)
|..
T Consensus 285 ~~~ 287 (391)
T 1l0q_A 285 GKN 287 (391)
T ss_dssp SSS
T ss_pred CcC
Confidence 875
No 104
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=9.7e-36 Score=296.50 Aligned_cols=234 Identities=10% Similarity=0.104 Sum_probs=180.9
Q ss_pred EEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC--------
Q 012410 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS-------- 236 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~-------- 236 (464)
||.+.++++......+. ..+.+|+|+ |||++||+|+.| .++|||+.+++++.......+..+++.+
T Consensus 3 i~s~~~~~~~~~~~~h~----~~V~~v~fs-~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS----NPVTDYEFN-QDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------C----CCCCEEEEC-TTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCC----CceEEEEEC-CCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEE
Confidence 45556666543333333 334499997 899999999877 5899999999988766544455555543
Q ss_pred -CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC-cEEEEcccCCCceEEEEEcCC
Q 012410 237 -SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 237 -s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg-~~l~~l~gh~~~v~sv~Fspd 314 (464)
+.|++|+|||+++|+++.++.+. ..+.+|+|++ +.++++ .|++|+|||+.++ +++.++.+ ....++|+|
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKVD-APVKDLFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEECS-SCEEEEEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred ECCccEEEEEECCCCcEEEEEECC-CceEEEEEcC---CEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence 46789999999999999999865 6889999976 344444 4889999999999 77776665 344566888
Q ss_pred CcEEEE--Ee-CCeEEEEeC-CCc----------------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 315 NQLFLT--FR-NRTVAVWNF-RGE----------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 315 gqllaS--~s-D~TIklWd~-~Ge----------------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
+++|. ++ |++|+|||+ +++ ++.++.+|... |++++|+|||++|||||.
T Consensus 148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~-----v~~~~~s~~g~~l~s~s~------ 215 (355)
T 3vu4_A 148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP-----IKMVRLNRKSDMVATCSQ------ 215 (355)
T ss_dssp -TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSC-----EEEEEECTTSSEEEEEET------
T ss_pred -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc-----eEEEEECCCCCEEEEEeC------
Confidence 55555 46 999999999 465 48899999988 899999999999999997
Q ss_pred cccCCCCe-EEEEeCCCCeEEEEEc-c-CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 375 WMEGSAGS-INVSSILTGKCLAKIN-A-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 375 ~~~s~Dgt-IklWdi~tG~cl~tl~-g-h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
|++ |+|||+.+|+|+.++. | |.. .|++|+|+|||+.||
T Consensus 216 -----d~~~v~iwd~~~~~~~~~~~~g~h~~----------------------------------~v~~~~~s~~~~~l~ 256 (355)
T 3vu4_A 216 -----DGTIIRVFKTEDGVLVREFRRGLDRA----------------------------------DVVDMKWSTDGSKLA 256 (355)
T ss_dssp -----TCSEEEEEETTTCCEEEEEECTTCCS----------------------------------CEEEEEECTTSCEEE
T ss_pred -----CCCEEEEEECCCCcEEEEEEcCCCCC----------------------------------cEEEEEECCCCCEEE
Confidence 999 9999999999999998 6 876 899999999999999
Q ss_pred EeeCCCcEEeccC
Q 012410 452 TGNRHGLVHVWSN 464 (464)
Q Consensus 452 Sgs~DgtVrlWd~ 464 (464)
||+.|++|+|||.
T Consensus 257 s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 257 VVSDKWTLHVFEI 269 (355)
T ss_dssp EEETTCEEEEEES
T ss_pred EEECCCEEEEEEc
Confidence 9999999999984
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-35 Score=300.75 Aligned_cols=275 Identities=11% Similarity=0.123 Sum_probs=221.5
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCC---CCCcccceee-------------------------
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK---PDSGFALFES------------------------- 182 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~---~~~~~~l~~~------------------------- 182 (464)
.+.+|.|+|+|+.|+++ .+ ..+.+|++.+|+ .....+....
T Consensus 6 p~~~v~~s~dg~~l~~~----~~-------~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAI----IK-------NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENK 74 (450)
T ss_dssp CCCEEEECSSSSEEEEE----ET-------TEEEEEEEETTTEEEEEEEEECCC--------------------------
T ss_pred cEEEEEecCCCCEEEEE----eC-------CeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccc
Confidence 46889999999976662 23 489999999998 4322211100
Q ss_pred -------------------------ccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCC--CCeEEEEec----CCCEe
Q 012410 183 -------------------------ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLK--NYTMLYSIS----DKHVQ 230 (464)
Q Consensus 183 -------------------------~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~--tg~~l~tl~----~~~V~ 230 (464)
.+.+.+.+++|+ |||+.| |+|+.|++|+|||+. +++++..+. ...|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 75 KLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN 153 (450)
T ss_dssp -------------------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE
T ss_pred ccccCcCccccccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce
Confidence 011245689997 899996 999999999999999 899988764 47899
Q ss_pred EEEEeCC--------CceeEEEEEcCCCcEEE----EEeeCCcceeeEEEEcc-C-CCeEEEEeCCCeEEEEECCCCcEE
Q 012410 231 EIKIRSS--------SHVPLKILSIEDGTVLK----VFYHLLHRNKKVDFIEQ-F-NEKLLVKQENENLQILDVRNAELM 296 (464)
Q Consensus 231 ~Vafs~s--------~d~tIklWdi~tG~~l~----tl~~~~~~~~~V~F~~~-~-~~~lla~s~D~tIkIWDv~tg~~l 296 (464)
+|+|+|+ .++.|++|++.+++... ++.+|...+.+|+|+|+ + +..|++++.|++|+|||+.+++++
T Consensus 154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 154 AISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 9999984 66889999999998665 77777788999999994 1 456777899999999999999998
Q ss_pred EE-cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC--------------------CcCCCCeeE
Q 012410 297 EV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL--------------------WHPDCNTNN 353 (464)
Q Consensus 297 ~~-l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~--------------------~~~~~~v~s 353 (464)
.. +.+|...|.+++|+ ||++|+|++ |++|+|||+ +|+++.++..|.. ...+..|.+
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 87 77999999999999 999999999 999999999 6999999975420 001123889
Q ss_pred EEECCCCCEEEEEecCCCccccccCCCCeEEEEeC--CCC---eEEEEEccCCCCCCcccccCCCCCCcccccccccccc
Q 012410 354 IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTG---KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 354 vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi--~tG---~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
++|+|||++|++++. .|++|+|||+ .++ +++.++.+| .
T Consensus 313 i~~~~~~~~l~~~~~----------~d~~i~iw~~~~~~~~~l~~~~~~~~~-~-------------------------- 355 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVE----------ATKCIIILEMSEKQKGDLALKQIITFP-Y-------------------------- 355 (450)
T ss_dssp EEECSSSSEEEEEET----------TCSEEEEEEECSSSTTCEEEEEEEECS-S--------------------------
T ss_pred EEEeCCCCEEEEEEC----------CCCeEEEEEeccCCCCceeeccEeccC-C--------------------------
Confidence 999999999999983 2999999999 787 899999988 4
Q ss_pred ccccccccCEEEEEEcCCCCEEEEeeC------CCcEEecc
Q 012410 429 STVGEALEDITSLFYDEERNEIYTGNR------HGLVHVWS 463 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~~LaSgs~------DgtVrlWd 463 (464)
.|++++|+|++..++.++. +..|+||.
T Consensus 356 --------~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 356 --------NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp --------CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred --------ceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 7999999997666665554 55688885
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=9.9e-36 Score=300.38 Aligned_cols=222 Identities=14% Similarity=0.148 Sum_probs=167.4
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE--E---e--cCCCEeEEEEeC----------------CCceeEEEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--S---I--SDKHVQEIKIRS----------------SSHVPLKILS 246 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~--t---l--~~~~V~~Vafs~----------------s~d~tIklWd 246 (464)
.+.| ++++++||+|+.|+||||||++++++.. . + +.+.|++|+|+| +.|++|||||
T Consensus 94 ~~~~-~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 94 VNSS-PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ---C-CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred eeec-CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 3445 5899999999999999999999998753 2 2 256899999975 3899999999
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-------------------------cc
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------------------------RT 301 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-------------------------~g 301 (464)
++++.++.++..+...+.+|+|+|.+...|++++.|++|+|||++++++...+ .+
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 99998888877666889999999953346777899999999999999865432 46
Q ss_pred CCCceEEEEEc-CCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC-------------------
Q 012410 302 EFMTPSAFIFL-YENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD------------------- 359 (464)
Q Consensus 302 h~~~v~sv~Fs-pdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD------------------- 359 (464)
|...+.++.|+ |||+.|++++ |++|++||+ .++....|.+|... ++.+.++|+
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK-----LGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc-----cccEEEccccccccccCcceeEEEccCC
Confidence 77788899987 8999999999 999999999 69999999988876 455555553
Q ss_pred -CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCE
Q 012410 360 -QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 438 (464)
Q Consensus 360 -g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 438 (464)
+.++++|+. ||+|+|||+.+|+++.++.+|.. .|
T Consensus 328 ~~~~~~sgs~-----------Dg~V~lwd~~~~~~~~~~~~~~~----------------------------------~V 362 (393)
T 4gq1_A 328 MDYFATAHSQ-----------HGLIQLINTYEKDSNSIPIQLGM----------------------------------PI 362 (393)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTCTTCCEEEEECSS----------------------------------CE
T ss_pred CCEEEEEECC-----------CCEEEEEECCCCcEEEEecCCCC----------------------------------cE
Confidence 346667665 99999999999999999999986 89
Q ss_pred EEEEEcCCCCEEEEeeCCCc--EEec
Q 012410 439 TSLFYDEERNEIYTGNRHGL--VHVW 462 (464)
Q Consensus 439 ~slafspDg~~LaSgs~Dgt--VrlW 462 (464)
++|+|||||+.||+|++||. ||||
T Consensus 363 ~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 363 VDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 99999999999999999886 4554
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=285.14 Aligned_cols=248 Identities=9% Similarity=0.041 Sum_probs=196.5
Q ss_pred ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCCCCCcccceeeccccCceEEEEeC
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDSGFALFESESLKWPGFVEFDD 195 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~~~~l~~~~~~~~~~~VaFs~ 195 (464)
|+++..++. |...|.+++|+|+|+.|+++ +.| ++++||++. ++++...+..| ...+.+++|+
T Consensus 1 G~~~~~~~~-h~~~v~~~~~s~~~~~l~~~----~~d------g~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~- 64 (379)
T 3jrp_A 1 GSMVVIANA-HNELIHDAVLDYYGKRLATC----SSD------KTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWA- 64 (379)
T ss_dssp ----CCEEE-CCCCEEEEEECSSSSEEEEE----ETT------SCEEEEEEETTEEEEEEEECCC----SSCEEEEEEC-
T ss_pred CCccEEecC-CcccEEEEEEcCCCCEEEEE----ECC------CcEEEEecCCCcceeeeEecCC----CCcEEEEEeC-
Confidence 456677744 88999999999999999994 455 699999997 44433222222 2344589997
Q ss_pred CC--CcEEEEecCCCcEEEEeCCCCe--EEEEec--CCCEeEEEEeCC----------CceeEEEEEcCCCcE--EEEEe
Q 012410 196 VN--GKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKIRSS----------SHVPLKILSIEDGTV--LKVFY 257 (464)
Q Consensus 196 pd--Gk~LaSgs~D~tiKlWdl~tg~--~l~tl~--~~~V~~Vafs~s----------~d~tIklWdi~tG~~--l~tl~ 257 (464)
|+ |++|++|+.|++|+|||+.+++ ++..+. ...|.+++|+|+ .|++|++||+.+++. ...+.
T Consensus 65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp CGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred CCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec
Confidence 56 9999999999999999999997 566665 578999999874 578999999998844 34455
Q ss_pred eCCcceeeEEEEcc------------CCCeEEEEeCCCeEEEEECCCCc----EEEEcccCCCceEEEEEcCC---CcEE
Q 012410 258 HLLHRNKKVDFIEQ------------FNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYE---NQLF 318 (464)
Q Consensus 258 ~~~~~~~~V~F~~~------------~~~~lla~s~D~tIkIWDv~tg~----~l~~l~gh~~~v~sv~Fspd---gqll 318 (464)
.+...+.+++|+|. ++..+++++.|++|+|||+++++ ++..+.+|...|.+++|+|+ +++|
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 66678899999984 46778889999999999998875 66788999999999999999 9999
Q ss_pred EEEe-CCeEEEEeC-CCc---eEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 319 LTFR-NRTVAVWNF-RGE---LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 319 aS~s-D~TIklWd~-~Ge---~l~tl~--gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
++++ |++|+|||+ +++ ....+. +|... |++++|+|||++||+++. ||+|+|||+.++
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~~~-----------dg~i~iw~~~~~ 288 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNKVTLWKENLE 288 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEES-----------SSSEEEEEEEET
T ss_pred EEEeCCCEEEEEeCCCCCccceeeeeccccCCCc-----EEEEEEcCCCCEEEEecC-----------CCcEEEEeCCCC
Confidence 9999 999999999 454 333333 36655 899999999999999987 999999999866
Q ss_pred eEEEEE
Q 012410 392 KCLAKI 397 (464)
Q Consensus 392 ~cl~tl 397 (464)
.....+
T Consensus 289 ~~~~~~ 294 (379)
T 3jrp_A 289 GKWEPA 294 (379)
T ss_dssp TEEEEE
T ss_pred Cccccc
Confidence 544433
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.9e-35 Score=295.37 Aligned_cols=272 Identities=14% Similarity=0.178 Sum_probs=209.0
Q ss_pred eeehhccCCeEEeeecccc-c---EeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 100 IVFALAHSGVCAAFSRETN-R---RICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 100 ~l~~l~~~g~~~~~~~~~g-~---~l~~ln~~~~~~i~Sv~fs~-~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
++++.+.+|.+++|+..+. + .+..+ .+|...|.++.|+| +++.|++ ++.| ++++||++.+++..
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s----~s~d------g~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIAS----GSED------CTVMVWEIPDGGLV 117 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEE----EETT------SEEEEEECCTTCCS
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEE----EeCC------CeEEEEEccCCCCc
Confidence 4445678999999997543 2 34455 45889999999999 8999999 4456 79999999998542
Q ss_pred Cc--ccceee-ccccCceEEEEeCCCC-cEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCC
Q 012410 175 SG--FALFES-ESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDG 250 (464)
Q Consensus 175 ~~--~~l~~~-~~~~~~~~VaFs~pdG-k~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG 250 (464)
.. .++... .+...+..|+|+ |+| .+|++|+.|++|+|||+.+++++.++..
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------ 172 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP------------------------ 172 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEEC-SSBTTEEEEEETTSCEEEEETTTTEEEEEECT------------------------
T ss_pred cccCCceEEecCCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEEECCCCCccEEEec------------------------
Confidence 11 011111 133445589997 898 6999999999999999988777665510
Q ss_pred cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-ccCCCc-eEEEEEcCCCcEEEEE---e-CC
Q 012410 251 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMT-PSAFIFLYENQLFLTF---R-NR 324 (464)
Q Consensus 251 ~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-~gh~~~-v~sv~FspdgqllaS~---s-D~ 324 (464)
..|...+.+++|+| ++..+++++.|++|+|||+++++++..+ .+|... +..++|+|||++|+++ + |+
T Consensus 173 ------~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 173 ------DVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp ------TTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred ------CCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 12224556777777 4567888999999999999999999998 788765 8999999999999999 7 99
Q ss_pred eEEEEeC-CCce-EEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-EEEEEccC
Q 012410 325 TVAVWNF-RGEL-VTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-CLAKINAT 400 (464)
Q Consensus 325 TIklWd~-~Ge~-l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-cl~tl~gh 400 (464)
+|++||+ +++. +..+. +|... +..++|+|||++|+.++. .|++|++||+.+++ ++..+.+|
T Consensus 246 ~i~iwd~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~g~----------~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 246 QVALWDTKHLEEPLSLQELDTSSG-----VLLPFFDPDTNIVYLCGK----------GDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp EEEEEETTBCSSCSEEEECCCCSS-----CEEEEEETTTTEEEEEET----------TCSCEEEEEECSSTTCEEEEEEE
T ss_pred eEEEEcCccccCCceEEeccCCCc-----eeEEEEcCCCCEEEEEEc----------CCCeEEEEEecCCCcceEeeccc
Confidence 9999999 4554 44443 45555 789999999999975432 39999999999998 47777776
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.. -..|++++|+|||..+++ .|+.+++|+
T Consensus 311 ~~--------------------------------~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 311 SS--------------------------------KESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp CC--------------------------------SSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred cc--------------------------------CCcccceEEeccccccee--cceeEEEEE
Confidence 52 017899999999999886 567999997
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=323.33 Aligned_cols=249 Identities=9% Similarity=0.014 Sum_probs=198.1
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
-..+|++|+|||||+.+|| +++| +|++ +..++++. ..|. +.+..|+|+ ||| .|
T Consensus 14 ~~~~v~sv~~SpDG~~iAS----as~D------~TV~--d~~~~~~l---~gh~----~~v~~V~Fs-Pdg-------~~ 66 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLT----TFPD------ISIG--QPKYAKDI---NCNS----KNLFHVKEF-PLE-------FE 66 (588)
T ss_dssp CSSSSCCEEECTTSCEEEE----CSSS------EEEE--EECCCSCC---SSBG----GGTEEEEEE-CCC-------CC
T ss_pred hhccEEEEEECCCCCEEEE----EcCC------ceee--ccccccee---cCCC----ccEEEEEEC-CCC-------Cc
Confidence 3478999999999999999 6677 7888 65555543 3333 334489998 899 56
Q ss_pred CcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCc----ceeeEEEEccCCC
Q 012410 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLH----RNKKVDFIEQFNE 274 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~----~~~~V~F~~~~~~ 274 (464)
+++++|+.+. ..+.++. ...|.+|+|||+ .|++|+|||.++ ++.++.|+.+ .+.+|+|+| ++.
T Consensus 67 ~~~~~~~~~~-~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~ 142 (588)
T 2j04_A 67 NKLDFELAQQ-NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IES 142 (588)
T ss_dssp CTTTTSCCCS-SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSS
T ss_pred ceEEEEeCCC-ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCC
Confidence 6666666432 2222322 678999999994 789999999754 8888873211 489999999 578
Q ss_pred eEEEEeCCCeEEEEECCCCc-------EEEEc----ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cce---EEE
Q 012410 275 KLLVKQENENLQILDVRNAE-------LMEVS----RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL---VTS 338 (464)
Q Consensus 275 ~lla~s~D~tIkIWDv~tg~-------~l~~l----~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~---l~t 338 (464)
.|+++++||+|+|||+.+++ .++++ .||..+|.+++||||| +|+++ |++|++||+. +++ +++
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 88889999999999999986 46776 7788999999999999 55666 9999999994 553 467
Q ss_pred e-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 339 F-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 339 l-~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
| .+|... |++|+|+ |++|||+| |++|+|||+.+++......||++
T Consensus 221 L~~~h~~~-----V~svaFs--g~~LASa~------------~~tIkLWd~~~~~~~~~~~gh~~--------------- 266 (588)
T 2j04_A 221 IQNASRRK-----ITDLKIV--DYKVVLTC------------PGYVHKIDLKNYSISSLKTGSLE--------------- 266 (588)
T ss_dssp EECCCSSC-----CCCEEEE--TTEEEEEC------------SSEEEEEETTTTEEEEEECSCCS---------------
T ss_pred ecccccCc-----EEEEEEE--CCEEEEEe------------CCeEEEEECCCCeEEEEEcCCCc---------------
Confidence 8 488776 8899999 69999986 79999999988887555558987
Q ss_pred cccccccccccccccccccCEEEEEE--cCCCCEEEEeeCCCcEEecc
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFY--DEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slaf--spDg~~LaSgs~DgtVrlWd 463 (464)
.|++++| +|||+.|+++++||+ |||.
T Consensus 267 -------------------~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 267 -------------------NFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp -------------------CCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred -------------------eEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 8889999 999999999999999 9986
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.5e-34 Score=286.08 Aligned_cols=303 Identities=12% Similarity=0.106 Sum_probs=235.7
Q ss_pred hccCC--eEEeeecccc--cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccc
Q 012410 104 LAHSG--VCAAFSRETN--RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (464)
Q Consensus 104 l~~~g--~~~~~~~~~g--~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l 179 (464)
...++ .+..++..++ +.+..+.. +.. +.+++|+|++..+++ ++.+ +++++|++.+|+.....+.
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~-~~~~~~s~~~~~~~~----~~~~------~~i~~~d~~~g~~~~~~~~ 162 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKT-GFQ-PKSVRFIDNTRLAIP----LLED------EGMDVLDINSGQTVRLSPP 162 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEEC-SSC-BCCCEESSSSEEEEE----BTTS------SSEEEEETTTCCEEEECCC
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcC-CCC-ceEEEEeCCCeEEEE----eCCC------CeEEEEECCCCeEeeecCc
Confidence 34555 4444444335 56666644 433 569999996655555 4555 6899999999987532221
Q ss_pred ee-eccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEc
Q 012410 180 FE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSI 247 (464)
Q Consensus 180 ~~-~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi 247 (464)
-. ..+.+.+..++|+ |+|+++++++.|++|++||+++++++.++. ...+..++|+|+ .|++|++||+
T Consensus 163 ~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 163 EKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR 241 (433)
T ss_dssp HHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence 11 1123344579996 899999999999999999999999998876 567999999873 5789999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe--------CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EE
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LF 318 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s--------~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-ll 318 (464)
.+|+++.++.++ ..+..++|+|+ +..+++++ .|++|++||+.+++++..+ .|...+..++|+|+|+ ++
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~ 318 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIY 318 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEE
T ss_pred CCCcEEEEecCC-CCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEE
Confidence 999999998864 55799999984 56777766 4899999999999988876 4455889999999996 55
Q ss_pred EEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc----cccccCCCCeEEEEeCCCCe
Q 012410 319 LTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE----DQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 319 aS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~----~~~~~s~DgtIklWdi~tG~ 392 (464)
++++ |++|++||+ +|+++..+. |... +.+++|+|||++|++++..... --..++.||+|++||+.+|+
T Consensus 319 ~~~~~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 319 VSDMCCSKIEVYDLKEKKVQKSIP-VFDK-----PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE-CSSS-----EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEecCCCEEEEEECCCCcEEEEec-CCCC-----CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 6767 999999999 699998886 4444 7899999999999988752100 00344558999999999999
Q ss_pred EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeC-CCcEEecc
Q 012410 393 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR-HGLVHVWS 463 (464)
Q Consensus 393 cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~-DgtVrlWd 463 (464)
++..+.++. .+.+++|+|||+.|++++. |++|++|+
T Consensus 393 ~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 393 VKEFWEAGN-----------------------------------QPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp EEEEEECSS-----------------------------------SEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EEEEecCCC-----------------------------------CCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 999998754 7899999999999998875 99999997
No 111
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.3e-35 Score=288.23 Aligned_cols=266 Identities=7% Similarity=0.033 Sum_probs=197.8
Q ss_pred cceEEEEec--cceeehhccCCeEEeeeccccc--EeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCCcccceee
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKCRS 162 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~--~g~~l~svSa~~sddfs~L~~~t 162 (464)
..|..+.+. |++|++++.|+++++||+.+++ ++..+ .+|...|++|+|+| +|+.|+++ +.| ++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~----s~D------~~ 82 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASC----SYD------RK 82 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEE----ETT------SC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEE----ECC------CE
Confidence 356666665 8999999999999999988775 46677 45889999999986 48999994 456 79
Q ss_pred EEEEEeccCCCCCcccceeeccccCceEEEEeCCC--CcEEEEecCCCcEEEEeCCCCeEE---EEec--CCCEeEEEEe
Q 012410 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTML---YSIS--DKHVQEIKIR 235 (464)
Q Consensus 163 i~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd--Gk~LaSgs~D~tiKlWdl~tg~~l---~tl~--~~~V~~Vafs 235 (464)
++||++++|+...... +. .+...+.+|+|+ |+ |++||+|+.|++|+|||+.++... ..+. ...|.+++|+
T Consensus 83 v~iWd~~~~~~~~~~~-~~-~h~~~V~~v~~~-p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 83 VIIWREENGTWEKSHE-HA-GHDSSVNSVCWA-PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp EEEECCSSSCCCEEEE-EC-CCSSCCCEEEEC-CTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred EEEEECCCCcceEEEE-cc-CCCCceEEEEEC-CCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence 9999999886432111 11 122445589997 77 899999999999999999876322 2222 4568888888
Q ss_pred CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC---cEEEEcccCCCceEEEEEc
Q 012410 236 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 236 ~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg---~~l~~l~gh~~~v~sv~Fs 312 (464)
|+.. .|.++....+ + .+.++..|++++.|++|+|||+.++ +++.++.+|...|.+++|+
T Consensus 160 ~~~~---------~~~~~~~~~~--~-------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 160 PAVV---------PGSLIDHPSG--Q-------KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp CCCC---------C------CCS--C-------CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred cccC---------Cccccccccc--c-------CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEec
Confidence 8632 1111110000 0 0112356777899999999999865 5788999999999999999
Q ss_pred CCC----cEEEEEe-CCeEEEEeCC-C---c-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 313 YEN----QLFLTFR-NRTVAVWNFR-G---E-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 313 pdg----qllaS~s-D~TIklWd~~-G---e-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
|++ ++|||++ |++|+|||++ + + ..+.+.+|..+ |++++|+|||++||+++. |++
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-----v~~v~~sp~g~~las~~~-----------D~~ 285 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV-----VWHVSWSITANILAVSGG-----------DNK 285 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC-----EEEEEECTTTCCEEEEES-----------SSC
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc-----EEEEEEcCCCCEEEEEcC-----------CCe
Confidence 997 8999999 9999999983 2 2 34567788877 899999999999999987 999
Q ss_pred EEEEeCC-CC--eEEEEEccCCC
Q 012410 383 INVSSIL-TG--KCLAKINATNC 402 (464)
Q Consensus 383 IklWdi~-tG--~cl~tl~gh~~ 402 (464)
|+||+.. .| +|+.++...+.
T Consensus 286 v~lw~~~~~g~~~~~~~~~~~~~ 308 (316)
T 3bg1_A 286 VTLWKESVDGQWVCISDVNKGQG 308 (316)
T ss_dssp EEEEEECTTSCEEEEEECC----
T ss_pred EEEEEECCCCcEEEeeeccCCCC
Confidence 9999975 34 68888866543
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-36 Score=293.19 Aligned_cols=220 Identities=8% Similarity=0.060 Sum_probs=184.8
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC-----CCceeEEEEEc---------CCCcEEEEEe-eCC
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS-----SSHVPLKILSI---------EDGTVLKVFY-HLL 260 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~-----s~d~tIklWdi---------~tG~~l~tl~-~~~ 260 (464)
+|+++|++|+.|++|+|||+++++++.++....|..++|+| +.|++|++|+. +++++++.+. .+.
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA 125 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC
Confidence 57899999999999999999999999888755666666654 68999999954 4888888777 444
Q ss_pred cceeeEEEEcc-CCCeEEEEeCCCeEEEEECCCCcEEEEccc-CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE
Q 012410 261 HRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 261 ~~~~~V~F~~~-~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l 336 (464)
..+.+++|+|. ++..+++++.|++|+|||+++++++.+..+ |...+.+++|+|||++||+++ |++|+|||+ +|+++
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 67899999882 256677789999999999999999887754 455799999999999999999 999999999 69988
Q ss_pred -EEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 337 -TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 337 -~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
.+|++ |... |.+++|+|||.+|++++ |++|+|||+.+++++.+++.+....
T Consensus 206 ~~~~~~~h~~~-----v~~l~fs~~g~~l~s~~------------~~~v~iwd~~~~~~~~~~~~~~~~~---------- 258 (343)
T 3lrv_A 206 SSRFPVDEEAK-----IKEVKFADNGYWMVVEC------------DQTVVCFDLRKDVGTLAYPTYTIPE---------- 258 (343)
T ss_dssp CEECCCCTTSC-----EEEEEECTTSSEEEEEE------------SSBEEEEETTSSTTCBSSCCCBC------------
T ss_pred ccEEeccCCCC-----EEEEEEeCCCCEEEEEe------------CCeEEEEEcCCCCcceeeccccccc----------
Confidence 89999 9987 89999999999999998 4499999999999988777643200
Q ss_pred CCccccccccccccccccccccCE--EEEEEcCCCCEEEEeeC-CCcEEecc
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDI--TSLFYDEERNEIYTGNR-HGLVHVWS 463 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V--~slafspDg~~LaSgs~-DgtVrlWd 463 (464)
..+ .+++|+|+|+.|++|+. |+.|+||+
T Consensus 259 ---------------------~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 259 ---------------------FKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp ------------------------CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ---------------------ccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 022 46999999999999998 99999996
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3e-33 Score=275.60 Aligned_cols=246 Identities=9% Similarity=0.103 Sum_probs=208.2
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS- 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s- 237 (464)
+++++|++.+|++...+..+ ..+.+++|+ |||+.| ++++.|++|++||+.+++++.++. ...|.+++|+|+
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg 85 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVG-----SNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG 85 (391)
T ss_dssp TEEEEEETTTTEEEEEEECS-----SSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEEeecC-----CCcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCC
Confidence 79999999999875433322 335689997 899876 788899999999999999998887 568999999884
Q ss_pred --------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEE-EEeCCCeEEEEECCCCcEEEEcccCCCceEE
Q 012410 238 --------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDVRNAELMEVSRTEFMTPSA 308 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~ll-a~s~D~tIkIWDv~tg~~l~~l~gh~~~v~s 308 (464)
.+++|++||+++|+++..+.++ ..+..++|+|+ +..++ +++.|++|++||+.+++++..+..| ..+..
T Consensus 86 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~ 162 (391)
T 1l0q_A 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKG 162 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcce
Confidence 4689999999999999998864 56799999984 55564 5678999999999999999998877 46799
Q ss_pred EEEcCCCcEE-EEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 309 FIFLYENQLF-LTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 309 v~Fspdgqll-aS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
++|+|||+.| ++++ |++|++||+ +++++..+..+. . +..++|+|||++|++++. .+.|++|++
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~~~~g~~l~~~~~--------~~~~~~v~~ 228 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-A-----PSGIAVNPEGTKAYVTNV--------DKYFNTVSM 228 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-E-----EEEEEECTTSSEEEEEEE--------CSSCCEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-C-----ccceEECCCCCEEEEEec--------CcCCCcEEE
Confidence 9999999877 6777 999999999 699988887553 3 789999999999998873 112899999
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE-EEeeCCCcEEeccC
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVWSN 464 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L-aSgs~DgtVrlWd~ 464 (464)
||+.+++++.++..|. .+.+++|+|||+.| ++++.|++|++||.
T Consensus 229 ~d~~~~~~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 229 IDTGTNKITARIPVGP-----------------------------------DPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EETTTTEEEEEEECCS-----------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEEecCC-----------------------------------CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 9999999999998876 57899999999988 68899999999984
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.7e-34 Score=272.86 Aligned_cols=264 Identities=15% Similarity=0.119 Sum_probs=206.3
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccc----cEeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCCcccce
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETN----RRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKC 160 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g----~~l~~ln~~~~~~i~Sv~fs~--~g~~l~svSa~~sddfs~L~~ 160 (464)
..|..+.+. |++|++++.+|.+++|++.++ +.+..+. +|...|.++.|+| ||+.|++++ .|
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~----~d------ 80 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASAS----YD------ 80 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEE----TT------
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEc----CC------
Confidence 456667665 899999999999999998877 4667774 5888899999999 699999944 55
Q ss_pred eeEEEEEeccCCCCCcc----cceee-ccccCceEEEEeCCC--CcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEE
Q 012410 161 RSTKIEYIRRGKPDSGF----ALFES-ESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEI 232 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~----~l~~~-~~~~~~~~VaFs~pd--Gk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~V 232 (464)
++++||++.+++..... ..... .+...+..++|+ |+ |++|++++.|++|+|||+.+++++.++. ...+..+
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA-PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc-CCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 79999999988643211 11111 123345589997 88 9999999999999999999888654332 0111111
Q ss_pred EEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc--CCCeEEEEeCCCeEEEEECCCCcE--EEEcccCCCceEE
Q 012410 233 KIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSA 308 (464)
Q Consensus 233 afs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~--~~~~lla~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~s 308 (464)
.+.+ ..+...+.+++|+|. .+..+++++.|+.+.+|+..+++. +..+.+|...|.+
T Consensus 160 ~~~~--------------------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 219 (351)
T 3f3f_A 160 SIPP--------------------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRS 219 (351)
T ss_dssp SCCC--------------------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEE
T ss_pred cccc--------------------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeE
Confidence 1111 122356688888884 367788899999999999888876 7789999999999
Q ss_pred EEEcCCC----cEEEEEe-CCeEEEEeC-CC----------------------------------------------ceE
Q 012410 309 FIFLYEN----QLFLTFR-NRTVAVWNF-RG----------------------------------------------ELV 336 (464)
Q Consensus 309 v~Fspdg----qllaS~s-D~TIklWd~-~G----------------------------------------------e~l 336 (464)
++|+|++ ++|++++ |++|++||+ ++ +++
T Consensus 220 ~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299 (351)
T ss_dssp EEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEE
T ss_pred EEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEE
Confidence 9999999 8999999 999999998 44 788
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC---eEEEEEccC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG---KCLAKINAT 400 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG---~cl~tl~gh 400 (464)
.++.+|... |++++|+|||++|||++. ||+|+|||+.++ +|+.++..|
T Consensus 300 ~~~~~h~~~-----v~~~~~s~~~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 300 SEHDDHNGE-----VWSVSWNLTGTILSSAGD-----------DGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EEECTTSSC-----EEEEEECSSSCCEEEEET-----------TSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEEeccccc-----EEEEEEcCCCCEEEEecC-----------CCcEEEEecCcCcchhheeehccc
Confidence 999999988 899999999999999987 999999999988 577777665
No 115
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=2.1e-33 Score=299.17 Aligned_cols=311 Identities=9% Similarity=0.068 Sum_probs=245.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe--ccCCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI--RRGKPDS 175 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i--~~G~~~~ 175 (464)
|.++++...++.+.+||..+|+.+.++..++. +++++|+|||+.|++++ .+ .++.+||+ .++++..
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~----~d------~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIG----RD------ARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCEEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEEC----CC------CeEEEEECcCCCCcEEE
Confidence 77888889999999999999999999976554 89999999999999955 33 59999999 7887654
Q ss_pred cccceeeccccCceEEEEeCC----CCcEEEEecC-CCcEEEEeCCCCeEEEEecC-------------CCEeEEEEeCC
Q 012410 176 GFALFESESLKWPGFVEFDDV----NGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD-------------KHVQEIKIRSS 237 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~p----dGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~-------------~~V~~Vafs~s 237 (464)
.++ .-..|..|+|| | ||++|++++. |++|+|||..+++++.++.. ..|.+|+|+|+
T Consensus 217 ~i~-----~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 217 EIK-----IGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp EEE-----CCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred EEe-----cCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 333 12456799997 9 9999998885 89999999999999988753 26889999984
Q ss_pred ---------CceeEEEEEcCCCcEEE--EEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEccc----
Q 012410 238 ---------SHVPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT---- 301 (464)
Q Consensus 238 ---------~d~tIklWdi~tG~~l~--tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~g---- 301 (464)
.+++|.+||+.++++++ ++. +......++|+| ++.++++++ .|++|++||+.+|+++.++..
T Consensus 291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp SSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred CCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 56799999999988776 444 235668899999 466677654 789999999999999998774
Q ss_pred CCCceEEEEEcCC-CcEEEEEe--CCeEEEEeC-C-------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 012410 302 EFMTPSAFIFLYE-NQLFLTFR--NRTVAVWNF-R-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 302 h~~~v~sv~Fspd-gqllaS~s--D~TIklWd~-~-------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
|......+ ++|+ |++++|++ |++|+|||. + +++++++++|..+ +..|+|+|||++|++++.-.
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-----~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCCEEEECCTTC
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-----ceEEEcCCCCCcEEEecCCC
Confidence 55444444 5676 88899985 899999998 6 8999999999887 67899999999999986311
Q ss_pred CccccccCCCCeEEEEeCCCCeEE-EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE
Q 012410 371 PEDQWMEGSAGSINVSSILTGKCL-AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 449 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~tG~cl-~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~ 449 (464)
|+.. .+++|.|||+.|++++ .+|.-- -|+..+++-+.|+.++|+|||++
T Consensus 443 ~~~~----~~~~v~v~d~~~~~~~~~~~~v~--------------------------~~~~~~~~~~~~~~~~~~~~g~~ 492 (543)
T 1nir_A 443 PDAR----ISQSVAVFDLKNLDAKYQVLPIA--------------------------EWADLGEGAKRVVQPEYNKRGDE 492 (543)
T ss_dssp SSHH----HHTCEEEEETTCTTSCCEEECHH--------------------------HHHCCCSSCCEEEEEEECSSSSE
T ss_pred CCcc----cCceEEEEECCCCCCCeEEeech--------------------------hhcccCCCCCceEeccCCCCCCE
Confidence 1100 1689999999999998 555210 01111111238999999999999
Q ss_pred EEEe-----eCCCcEEeccC
Q 012410 450 IYTG-----NRHGLVHVWSN 464 (464)
Q Consensus 450 LaSg-----s~DgtVrlWd~ 464 (464)
|+.+ +.|++|.|||-
T Consensus 493 ~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 493 VWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEEEECCTTSCCEEEEEET
T ss_pred EEEEeecCCCCCCeEEEEEC
Confidence 9966 35899999983
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.9e-34 Score=272.20 Aligned_cols=257 Identities=7% Similarity=0.055 Sum_probs=211.9
Q ss_pred cceEEEEec-----cceeehhccCCeEEeeeccc-ccEe-eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 89 TKVIEIVAA-----RDIVFALAHSGVCAAFSRET-NRRI-CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 89 s~v~~~~~a-----g~~l~~l~~~g~~~~~~~~~-g~~l-~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
..|..+.+. |++|++++.+|.+++|++.+ ++.+ ..+ ..|...|.++.|+|+|+.|++++ .| +
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~----~d------g 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDDGSKVFTAS----CD------K 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTTSSEEEEEE----TT------S
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcCCCEEEEEc----CC------C
Confidence 566666666 48999999999999999887 7776 556 55888999999999999999844 55 7
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEE--eCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeC--
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRS-- 236 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaF--s~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~-- 236 (464)
+++||++.++++.. . ..+...+..++| + |+|++|++++.|++|+|||+.+++++.++. ...+..+.+.+
T Consensus 109 ~v~iwd~~~~~~~~---~--~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQ---I--AQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM 182 (368)
T ss_dssp EEEEEETTTTEEEE---E--EECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred cEEEEEcCCCCcee---e--ccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence 99999999888642 1 123344558999 7 899999999999999999999999988877 45677777754
Q ss_pred ----CCceeEEEEEcCCCcEEEEEe--eCCcceeeEEEEccCCCe----EEEEeCCCeEEEEECCCC---cEEEEcccCC
Q 012410 237 ----SSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEK----LLVKQENENLQILDVRNA---ELMEVSRTEF 303 (464)
Q Consensus 237 ----s~d~tIklWdi~tG~~l~tl~--~~~~~~~~V~F~~~~~~~----lla~s~D~tIkIWDv~tg---~~l~~l~gh~ 303 (464)
..++.+++|++.++....... ...+....+++.+. ... +++++.|++|+|||+.++ +++..+.+|.
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD-KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC-TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc-CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 478899999998776544332 23355677777663 222 888999999999999998 6677888887
Q ss_pred C------------ceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 304 M------------TPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 304 ~------------~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
. .|.+++|+|||++|++++ |++|+|||+ +|+++.++.+|... |++++|+|||++||+++.
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP-----ISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC-----EEEEEECTTSSCEEEEEC
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC-----ceEEEECCCCCeEEEEec
Confidence 6 699999999999999999 999999999 69999999999988 899999999999999986
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=6.8e-34 Score=289.28 Aligned_cols=257 Identities=13% Similarity=0.140 Sum_probs=204.0
Q ss_pred cccEeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEEEecc----------CCCCCcccceeeccc
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRR----------GKPDSGFALFESESL 185 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~~i~~----------G~~~~~~~l~~~~~~ 185 (464)
+++........|...|.+++|+|+ +..|++ ++.+ ++|+||++.. +++...+..|.
T Consensus 116 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat----~~~d------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~---- 181 (430)
T 2xyi_A 116 CGKIEIEIKINHEGEVNRARYMPQNACVIAT----KTPS------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ---- 181 (430)
T ss_dssp --CEEEEEEEEESSCCSEEEEETTEEEEEEE----ECSS------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCS----
T ss_pred CCceEEEEEEcCCCcEEEEEECCCCCcEEEE----ECCC------CcEEEEECCCcccccCccccCCCcEEecCCC----
Confidence 444433333568888999999997 567777 4455 6899999976 33332222222
Q ss_pred cCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCccee
Q 012410 186 KWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 264 (464)
Q Consensus 186 ~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~ 264 (464)
..+.+++|+ |+|+ +|++|+.|++|+|||+.++.... ..+ .....+.+|...+.
T Consensus 182 ~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----------------~~~--------~~~~~~~~h~~~v~ 235 (430)
T 2xyi_A 182 KEGYGLSWN-PNLNGYLLSASDDHTICLWDINATPKEH-----------------RVI--------DAKNIFTGHTAVVE 235 (430)
T ss_dssp SCCCCEEEC-TTSTTEEEEECTTSCEEEEETTSCCBGG-----------------GEE--------ECSEEECCCSSCEE
T ss_pred CCeEEEEeC-CCCCCeEEEEeCCCeEEEEeCCCCCCCC-----------------cee--------ccceeecCCCCCEe
Confidence 334489997 8988 99999999999999998743210 000 01233444456788
Q ss_pred eEEEEccCCCeEEEEeCCCeEEEEECCCC---cEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeC-C-CceEE
Q 012410 265 KVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF-R-GELVT 337 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s~D~tIkIWDv~tg---~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~-~-Ge~l~ 337 (464)
.|+|+|..+..+++++.|++|+|||++++ +++..+.+|...|.+++|+|+++ +||+++ |++|+|||+ + ++++.
T Consensus 236 ~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~ 315 (430)
T 2xyi_A 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred eeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE
Confidence 99998855566677889999999999998 57788889999999999999998 799999 999999999 4 67899
Q ss_pred EeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCC--------------CeEEEEEccCCC
Q 012410 338 SFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILT--------------GKCLAKINATNC 402 (464)
Q Consensus 338 tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~t--------------G~cl~tl~gh~~ 402 (464)
++.+|... |.+++|+|+++ +|||++. |++|+|||+.+ .+++..+.+|..
T Consensus 316 ~~~~h~~~-----v~~i~~sp~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 379 (430)
T 2xyi_A 316 SFESHKDE-----IFQVQWSPHNETILASSGT-----------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379 (430)
T ss_dssp EEECCSSC-----EEEEEECSSCTTEEEEEET-----------TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS
T ss_pred EeecCCCC-----EEEEEECCCCCCEEEEEeC-----------CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC
Confidence 99999988 89999999995 7899886 99999999987 478888889986
Q ss_pred CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeCCCcEEecc
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWS 463 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~DgtVrlWd 463 (464)
.|++++|+|+++ .|+|++.||+|+||+
T Consensus 380 ----------------------------------~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 380 ----------------------------------KISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp ----------------------------------CEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ----------------------------------CceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 899999999999 999999999999997
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-34 Score=279.54 Aligned_cols=264 Identities=9% Similarity=-0.001 Sum_probs=200.2
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec------
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------ 169 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~------ 169 (464)
..+++|++++.||.+++||+.+|+.+..+. ...|+++.|+|+ +++ ++.| +++++|+..
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s----~s~D------~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IIS----RGPC------NRLLLLYPGNQITIL 109 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEE----ECST------TEEEEEETTTEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEE----ecCC------CeEEEEEccCceEEe
Confidence 347899999999999999999999999985 456889999997 666 4555 688888643
Q ss_pred ---cCCCCCcccceeeccccCceEEEEeCC--CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEE
Q 012410 170 ---RGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKI 244 (464)
Q Consensus 170 ---~G~~~~~~~l~~~~~~~~~~~VaFs~p--dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIkl 244 (464)
++++. ..+...+...+.+++|+ | +|++|++|+.|++|+|||+.+++++.....
T Consensus 110 ~~~~~~~~---~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------------------ 167 (343)
T 3lrv_A 110 DSKTNKVL---REIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA------------------ 167 (343)
T ss_dssp ETTTCCEE---EEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESSSSCEEEEECC------------------
T ss_pred ecCCccee---EEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec------------------
Confidence 44422 12222222445689997 9 999999999999999999988776443310
Q ss_pred EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE-EEccc-CCCceEEEEEcCCCcEEEEEe
Q 012410 245 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-EVSRT-EFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l-~~l~g-h~~~v~sv~FspdgqllaS~s 322 (464)
++...+.+++|+| ++..+++|+.|++|+|||+++++++ ..+.+ |...|.+++|+|+|++|++++
T Consensus 168 -------------~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 168 -------------KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp -------------CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred -------------CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence 1113467788887 3556666899999999999999988 88888 999999999999999999999
Q ss_pred CCeEEEEeC-CCceEEEecc---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 323 NRTVAVWNF-RGELVTSFED---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl~g---H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
|++|+|||+ +++++.+++. |...+. -.+++|+|+|++||+++. .|++|+||++.+++.....
T Consensus 234 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~l~~~s~----------~d~~i~v~~~~~~~~~~~~- 299 (343)
T 3lrv_A 234 DQTVVCFDLRKDVGTLAYPTYTIPEFKTG---TVTYDIDDSGKNMIAYSN----------ESNSLTIYKFDKKTKNWTK- 299 (343)
T ss_dssp SSBEEEEETTSSTTCBSSCCCBC-----C---CEEEEECTTSSEEEEEET----------TTTEEEEEEECTTTCSEEE-
T ss_pred CCeEEEEEcCCCCcceeeccccccccccc---ceEEEECCCCCEEEEecC----------CCCcEEEEEEcccccceEe-
Confidence 669999999 5887766654 544411 135999999999999873 3899999998665422221
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC---CCCEEEEeeCCCcEEec
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE---ERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp---Dg~~LaSgs~DgtVrlW 462 (464)
. .+..++|+| +++.|++++.||+++++
T Consensus 300 ---~----------------------------------~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 300 ---D----------------------------------EESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp ---E----------------------------------EEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred ---c----------------------------------CceeEecCccccccceeEEEecCCceEEE
Confidence 1 677889999 99999999999999986
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-33 Score=283.92 Aligned_cols=244 Identities=11% Similarity=0.092 Sum_probs=195.7
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCe---EEEEecC--C-------------------------------------
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--K------------------------------------- 227 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~---~l~tl~~--~------------------------------------- 227 (464)
.|+|+ |||++|+++ .+++|++||+.+|+ ++.++.. .
T Consensus 9 ~v~~s-~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (450)
T 2vdu_B 9 NLLTS-RDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKR 86 (450)
T ss_dssp EEEEC-SSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------------
T ss_pred EEEec-CCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccc
Confidence 79997 899977765 57899999999999 7666541 1
Q ss_pred -----------------CEeEEEEeCC---------CceeEEEEEcC--CCcEEEEEe--eCCcceeeEEEEccCCCeEE
Q 012410 228 -----------------HVQEIKIRSS---------SHVPLKILSIE--DGTVLKVFY--HLLHRNKKVDFIEQFNEKLL 277 (464)
Q Consensus 228 -----------------~V~~Vafs~s---------~d~tIklWdi~--tG~~l~tl~--~~~~~~~~V~F~~~~~~~ll 277 (464)
.|.+++|+|+ .|++|+|||+. +|++++++. .+...+.+|+|+| ++..|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~ 165 (450)
T 2vdu_B 87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVI 165 (450)
T ss_dssp -------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred cCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEE
Confidence 5999999884 67899999999 999999997 3346779999999 467788
Q ss_pred EEeCCCeEEEEECCCCcEEE----EcccCCCceEEEEEcCC---CcEEEEEe-CCeEEEEeC-CCceEEE-eccCCCCcC
Q 012410 278 VKQENENLQILDVRNAELME----VSRTEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNF-RGELVTS-FEDHLLWHP 347 (464)
Q Consensus 278 a~s~D~tIkIWDv~tg~~l~----~l~gh~~~v~sv~Fspd---gqllaS~s-D~TIklWd~-~Ge~l~t-l~gH~~~~~ 347 (464)
+++.|++|++||+.++++.. ++.+|...|.+++|+|| +++|++++ |++|+|||+ +|+++.+ +.+|..+
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~-- 243 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF-- 243 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC--
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc--
Confidence 89999999999999988654 88999999999999999 99999999 999999999 6999988 6699988
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccc
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 427 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (464)
|++++|+ ||++|+|++. |++|+|||+.+|+|+.++..+.. +....... + .....+
T Consensus 244 ---v~~~~~s-d~~~l~s~~~-----------d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~---~------~~~~~~ 298 (450)
T 2vdu_B 244 ---VSSICCG-KDYLLLSAGG-----------DDKIFAWDWKTGKNLSTFDYNSL-IKPYLNDQ---H------LAPPRF 298 (450)
T ss_dssp ---EEEEEEC-STTEEEEEES-----------SSEEEEEETTTCCEEEEEECHHH-HGGGCCTT---S------BC----
T ss_pred ---eEEEEEC-CCCEEEEEeC-----------CCeEEEEECCCCcEeeeecchhh-hhhhhhhc---c------cccccc
Confidence 8999999 9999999987 99999999999999999976531 00000000 0 000000
Q ss_pred ccccc-ccccCEEEEEEcCCCCEEEEee-CCCcEEecc
Q 012410 428 RSTVG-EALEDITSLFYDEERNEIYTGN-RHGLVHVWS 463 (464)
Q Consensus 428 ~~~~~-~~l~~V~slafspDg~~LaSgs-~DgtVrlWd 463 (464)
..... ..-..|.+|+|+|||+.|++++ .|++|+||+
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp ------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred cccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 00000 1112799999999999999999 999999997
No 120
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.1e-33 Score=277.83 Aligned_cols=228 Identities=14% Similarity=0.137 Sum_probs=190.0
Q ss_pred eEEEEeCCCCcE-EEEecCCCcEEEEeCCCC-eE---EEEec--CCCEeEEEEeC-C--------CceeEEEEEcCCC--
Q 012410 189 GFVEFDDVNGKV-LTYSAQDSIYKVFDLKNY-TM---LYSIS--DKHVQEIKIRS-S--------SHVPLKILSIEDG-- 250 (464)
Q Consensus 189 ~~VaFs~pdGk~-LaSgs~D~tiKlWdl~tg-~~---l~tl~--~~~V~~Vafs~-s--------~d~tIklWdi~tG-- 250 (464)
.+++++ |+... +++++.|++|+|||+.+. +. +.++. ...|.+++|+| + .|++|+|||++++
T Consensus 38 ~~~~~~-~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 38 GFCAVN-PKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp CSEEEC-SSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CcEEEC-CCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 368997 66654 446899999999999654 32 23343 56899999998 3 6899999999998
Q ss_pred -----cEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc--ccCCCceEEEEEcCCCcEEEEEe-
Q 012410 251 -----TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 251 -----~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l--~gh~~~v~sv~FspdgqllaS~s- 322 (464)
+++.++.+|...+..|+|+|.....+++++.|++|+|||+.+++++.++ .+|...|.+++|+|+|++|++++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 7788999777899999999953346777899999999999999999999 89999999999999999999999
Q ss_pred CCeEEEEeC-CCceEEEe-ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEEc-
Q 012410 323 NRTVAVWNF-RGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKIN- 398 (464)
Q Consensus 323 D~TIklWd~-~Ge~l~tl-~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~- 398 (464)
|++|+|||+ +|+++.++ .+|.... +..++|+|||++|++|.. .+.|++|+|||+.++++ +....
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~g~~--------~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTR----PVHAVFVSEGKILTTGFS--------RMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSS----CCEEEECSTTEEEEEEEC--------TTCCEEEEEEETTBCSSCSEEEEC
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCc----ceEEEEcCCCcEEEEecc--------CCCCceEEEEcCccccCCceEEec
Confidence 999999999 69999999 7888752 678999999999999831 12399999999999876 33332
Q ss_pred cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EeeCCCcEEecc
Q 012410 399 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLVHVWS 463 (464)
Q Consensus 399 gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs~DgtVrlWd 463 (464)
.|.. .|.+++|+|||+.|+ +|+.||+|++||
T Consensus 265 ~~~~----------------------------------~v~~~~~s~~~~~l~~~g~~dg~i~i~d 296 (402)
T 2aq5_A 265 DTSS----------------------------------GVLLPFFDPDTNIVYLCGKGDSSIRYFE 296 (402)
T ss_dssp CCCS----------------------------------SCEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred cCCC----------------------------------ceeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence 3433 789999999999996 667899999998
No 121
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-32 Score=262.74 Aligned_cols=264 Identities=8% Similarity=0.041 Sum_probs=215.0
Q ss_pred ceEEEEec--cceeehhccCCeEEeeeccccc---EeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCCcccceeeE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~---~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~sddfs~L~~~ti 163 (464)
.|..+.+. |++|++++.+|.+++|++.+++ .+..+ ..|...|.+++|+|+|+ .|++++ .+ +++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~----~d------g~i 81 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGT----VQ------GEI 81 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEE----TT------SCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEc----CC------CeE
Confidence 45555555 8899999999999999988887 34444 35888899999999999 898844 45 699
Q ss_pred EEEEe-ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC---------CeEEEEec-CCCEeEE
Q 012410 164 KIEYI-RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSIS-DKHVQEI 232 (464)
Q Consensus 164 ~l~~i-~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t---------g~~l~tl~-~~~V~~V 232 (464)
++|++ .+++. ..+.. ..+...+..++|+ | ++.|++++.|++|++||+.+ ++++.++. ...|.++
T Consensus 82 ~~wd~~~~~~~-~~~~~--~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 156 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTN--NEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM 156 (342)
T ss_dssp EEECSSSSSSE-EECBS--CCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred EEEEeccCCce-Eeccc--cCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEE
Confidence 99999 88875 22222 0022344589998 7 89999999999999999998 77776665 5789999
Q ss_pred EEeCC------CceeEEEEEcCC-CcEE-E-EEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC------cEEE
Q 012410 233 KIRSS------SHVPLKILSIED-GTVL-K-VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA------ELME 297 (464)
Q Consensus 233 afs~s------~d~tIklWdi~t-G~~l-~-tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg------~~l~ 297 (464)
+|+|+ .|++|++||+++ ++.. . ....+...+.+++|+|.++..+++++.|++|+|||+..+ +++.
T Consensus 157 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred EecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 99874 788999999998 6643 2 223445678999999822567788999999999999987 8888
Q ss_pred EcccCCC---------ceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccC-CCCcCCCCeeEEEECCCCCEEEE
Q 012410 298 VSRTEFM---------TPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH-LLWHPDCNTNNIYITSDQDLIIS 365 (464)
Q Consensus 298 ~l~gh~~---------~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH-~~~~~~~~v~svafSpDg~~LaS 365 (464)
++.+|.. .|.+++|+|+|++|++++ |++|++||+ +|+++.++.+| ..+ |.+++ |||++||+
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~-----v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-----VVKIA--CSDNILCL 309 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSE-----EEEEE--ECSSEEEE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCC-----ceEec--CCCCeEEE
Confidence 8888865 899999999999999999 999999999 69999999999 887 88998 99999999
Q ss_pred EecCCCccccccCCCCe-EEEEe
Q 012410 366 YCKAEPEDQWMEGSAGS-INVSS 387 (464)
Q Consensus 366 gs~~~~~~~~~~s~Dgt-IklWd 387 (464)
++. ||+ .+.+.
T Consensus 310 ~s~-----------Dg~~~~~~~ 321 (342)
T 1yfq_A 310 ATS-----------DDTFKTNAA 321 (342)
T ss_dssp EEE-----------CTHHHHCSS
T ss_pred Eec-----------CCccccccc
Confidence 997 888 55544
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=305.15 Aligned_cols=244 Identities=14% Similarity=0.146 Sum_probs=194.8
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCCCCCcccceeeccccCceEEEEeCCC--CcEE
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDSGFALFESESLKWPGFVEFDDVN--GKVL 201 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~~~~l~~~~~~~~~~~VaFs~pd--Gk~L 201 (464)
.+|...|.+++|+|+|+.|+++ +.| ++|+||++. ++++...+..| .+.+.+|+|+ |+ |++|
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg----~~d------g~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~s-~~~~~~~l 70 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATC----SSD------KTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWA-HPKFGTIL 70 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEE----ETT------TEEEEEEEETTEEEEEEEECCC----SSCEEEEEEC-CTTSCSEE
T ss_pred ccCcceeEEEEECCCCCeEEEE----ECC------CcEEEEecCCCCCccceeccCC----cCceEEEEec-CCCCCCEE
Confidence 4589999999999999999994 455 799999998 44433222222 2345589997 66 9999
Q ss_pred EEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC-CCeEEEEe
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF-NEKLLVKQ 280 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~-~~~lla~s 280 (464)
++|+.|++|+|||+.+++.. ++..+..|...+.+++|+|.. +..+++++
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~~------------------------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs 120 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRWS------------------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVAS 120 (753)
T ss_dssp EEEETTSCEEEEEEETTEEE------------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCccc------------------------------ccccccCCCCCeEEEEECCCCCCCEEEEEe
Confidence 99999999999998776521 222333344567777777742 56788899
Q ss_pred CCCeEEEEECCCCc--EEEEcccCCCceEEEEEcC-------------CCcEEEEEe-CCeEEEEeC-CC----ceEEEe
Q 012410 281 ENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY-------------ENQLFLTFR-NRTVAVWNF-RG----ELVTSF 339 (464)
Q Consensus 281 ~D~tIkIWDv~tg~--~l~~l~gh~~~v~sv~Fsp-------------dgqllaS~s-D~TIklWd~-~G----e~l~tl 339 (464)
.|++|++||++++. ....+.+|...|.+++|+| |+++|++++ |++|++||+ ++ +++.++
T Consensus 121 ~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 200 (753)
T 3jro_A 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200 (753)
T ss_dssp TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE
T ss_pred CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee
Confidence 99999999999984 3456788999999999999 699999999 999999998 45 678899
Q ss_pred ccCCCCcCCCCeeEEEECCC---CCEEEEEecCCCccccccCCCCeEEEEeCCCCe-----EEEEEccCCCCCCcccccC
Q 012410 340 EDHLLWHPDCNTNNIYITSD---QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK-----CLAKINATNCSPKVDDELG 411 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpD---g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~-----cl~tl~gh~~~~~~~~~~~ 411 (464)
.+|... |.+++|+|+ |++|++|+. ||+|+|||+.+++ .+....+|..
T Consensus 201 ~~h~~~-----V~~l~~sp~~~~~~~l~s~s~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~--------- 255 (753)
T 3jro_A 201 EGHSDW-----VRDVAWSPTVLLRSYLASVSQ-----------DRTCIIWTQDNEQGPWKKTLLKEEKFPD--------- 255 (753)
T ss_dssp CCCSSC-----EEEEEECCCCSSSEEEEEEES-----------SSCEEEEEESSSSSCCBCCBSSSSCCSS---------
T ss_pred cCCCCc-----EEEEEeccCCCCCCEEEEEec-----------CCEEEEecCCCCCCcceeEEeccCCCCC---------
Confidence 999988 899999999 999999987 9999999998875 2222233433
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|++++|+|||+.|++|+.||+|++||.
T Consensus 256 -------------------------~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 256 -------------------------VLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp -------------------------CCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred -------------------------ceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 7899999999999999999999999984
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.4e-32 Score=277.41 Aligned_cols=234 Identities=8% Similarity=-0.022 Sum_probs=162.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-eccccCceEEEEeCC--------C
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDV--------N 197 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~~~~~~~~VaFs~p--------d 197 (464)
.|...+..+++++++..|++ ++.| ++++||++.+|++.....+.. .+|.+++.+|+|+ | |
T Consensus 87 ~~~~~~~~~~~~~~~~~las----~~~d------~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~-p~~~~~~~~d 155 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLAC----VCQD------NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIA-DVYSADNRLA 155 (393)
T ss_dssp ----------CCEEEEEEEE----EETT------SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEE-EEECTTCSEE
T ss_pred ccCCCcceeecCCCCCEEEE----EeCC------CcEEEEECCCCccceeeeecccCCCCCceEEEEEc-cccccccCCC
Confidence 34455667788888888888 4566 899999999887632211111 1233566699998 5 8
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEe---------
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFY--------- 257 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~--------- 257 (464)
|++|||||.|+||||||+.++.++..+. ...|.+|+|+|+ .|++|+|||+.+++...++.
T Consensus 156 ~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp EEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred CCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 9999999999999999999888776544 678999999983 78999999999998776543
Q ss_pred ----------------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC--------
Q 012410 258 ----------------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-------- 313 (464)
Q Consensus 258 ----------------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-------- 313 (464)
++...+.+|+|.+.++.++++++.|++++|||+.+++....+.+|...+..+.|+|
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence 23345688999977788888899999999999999999988888877777666655
Q ss_pred ------------CCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 012410 314 ------------ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 314 ------------dgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
++.++++++ |++|+|||+ +|+++.++.+|..+ |++|+|||||++||+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~-----V~svafspdG~~LA~as------------ 378 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMP-----IVDFCWHQDGSHLAIAT------------ 378 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSC-----EEEEEECTTSSEEEEEE------------
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCc-----EEEEEEcCCCCEEEEEe------------
Confidence 445678888 999999999 69999999999887 99999999999999998
Q ss_pred CCeEEEEeC
Q 012410 380 AGSINVSSI 388 (464)
Q Consensus 380 DgtIklWdi 388 (464)
++.|.||.+
T Consensus 379 ~~Gv~lvrL 387 (393)
T 4gq1_A 379 EGSVLLTRL 387 (393)
T ss_dssp SSEEEEEEE
T ss_pred CCCeEEEEE
Confidence 455777754
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.9e-32 Score=278.68 Aligned_cols=213 Identities=14% Similarity=0.113 Sum_probs=152.6
Q ss_pred CceEEEEEEeeC----CCEEEEEEeecCCCCccc------------ceeeEEEEEe-ccCCCCCcccceeeccccCceEE
Q 012410 129 DEVIRSLFYNKN----NDSLITVSVYASDNFSSL------------KCRSTKIEYI-RRGKPDSGFALFESESLKWPGFV 191 (464)
Q Consensus 129 ~~~i~Sv~fs~~----g~~l~svSa~~sddfs~L------------~~~ti~l~~i-~~G~~~~~~~l~~~~~~~~~~~V 191 (464)
...|++|+|+|| ++.+++.+... .+|+| .-++|++|++ ++|+....+.+|..+ ...+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~--~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~----v~~l 184 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIK--AVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE----ETIL 184 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEE--EEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS----SCEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeE--EEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc----eeeE
Confidence 346899999999 88888855210 00110 1168888888 568776655555543 2278
Q ss_pred EEeCC---CCcEEEEecCCCcEEEEeCCCCeEEEEecC-----CCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcce
Q 012410 192 EFDDV---NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRN 263 (464)
Q Consensus 192 aFs~p---dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-----~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~ 263 (464)
+|+ | ||..|||||.|+||||||+++|+++++|.. ..|..++|+|+ |+.+.++.+
T Consensus 185 ~fs-~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd------------G~~lvs~s~----- 246 (356)
T 2w18_A 185 TFA-EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM------------GLLFIVLSH----- 246 (356)
T ss_dssp EEE-EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET------------TEEEEEEC------
T ss_pred Eee-ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC------------CCEEEEecc-----
Confidence 887 5 779999999999999999999999999963 24667788886 554444432
Q ss_pred eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEc-----ccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceE
Q 012410 264 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-----RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELV 336 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l-----~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l 336 (464)
+...-.+++|+.|++||+||+.+|+++.++ .||.....+..++ |.++||++ |+||||||+ +|+|+
T Consensus 247 ------~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l 318 (356)
T 2w18_A 247 ------PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT 318 (356)
T ss_dssp -----------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE
T ss_pred ------CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE
Confidence 111123566889999999999999999876 4787665554444 89999999 999999999 79999
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
++|++|...+ +..++|||||++|||||. |+||||||+
T Consensus 319 ~tL~gH~~~v----vs~vafSPDG~~LaSGS~-----------D~TIklWd~ 355 (356)
T 2w18_A 319 ALLPPVSDQH----WSFVKWSGTDSHLLAGQK-----------DGNIFVYHY 355 (356)
T ss_dssp EEECCC--CC----CCEEEECSSSSEEEEECT-----------TSCEEEEEE
T ss_pred EEecCCCCCe----EEEEEECCCCCEEEEEEC-----------CCcEEEecC
Confidence 9999998863 346999999999999997 999999995
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=4.2e-30 Score=256.54 Aligned_cols=258 Identities=9% Similarity=0.087 Sum_probs=213.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEee----cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLN----VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln----~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~ 173 (464)
+.++++...++.+++||..+|+.+..+. .+|...|++++|+|+|..+++ ++.+ +++++|++.++++
T Consensus 134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s----~~~d------~~v~~~d~~~~~~ 203 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS----QMQA------NAVHVFDLKTLAY 203 (433)
T ss_dssp SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE----EGGG------TEEEEEETTTCCE
T ss_pred CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE----ECCC------CEEEEEECCCceE
Confidence 7788888899999999999999887432 357888999999999998888 4455 6999999999887
Q ss_pred CCcccceeeccccCceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC--------------
Q 012410 174 DSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------------- 237 (464)
Q Consensus 174 ~~~~~l~~~~~~~~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------------- 237 (464)
...+.. +...+..++|+ |+|+.| ++++.|++|++||+.+++++.++. ...+..++|+|+
T Consensus 204 ~~~~~~----~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 204 KATVDL----TGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp EEEEEC----SSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred EEEEcC----CCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence 543332 22456689998 899877 566689999999999999998887 456899999873
Q ss_pred --CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC
Q 012410 238 --SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 238 --~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd 314 (464)
.|+.|++||+.+|+++..+.+. ..+..++|+|+ +..+++ ++.|++|++||+.+++++..+. +...+.+++|+||
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~d 355 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTIGPP-GNKRHIVSGNT-ENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPD 355 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEEEEE-ECEEEEEECSS-TTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTT
T ss_pred ccCCCeEEEEECCCCcEEeeccCC-CCcceEEECCC-CCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCC
Confidence 2779999999999999888653 46789999884 556656 5799999999999999998876 5578999999999
Q ss_pred CcEEEEEe-C---------------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 315 NQLFLTFR-N---------------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 315 gqllaS~s-D---------------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
|+.|++++ + ++|++||. +|+++.++.++. . +.+++|+|||++|++++.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~s~dg~~l~~~~~--------- 420 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-Q-----PTGLDVSPDNRYLVISDF--------- 420 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-S-----EEEEEECTTSCEEEEEET---------
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-C-----CceEEEcCCCCEEEEEEC---------
Confidence 99888776 3 49999999 799999998754 3 789999999999988763
Q ss_pred CCCCeEEEEeCC
Q 012410 378 GSAGSINVSSIL 389 (464)
Q Consensus 378 s~DgtIklWdi~ 389 (464)
.|++|++|++.
T Consensus 421 -~d~~i~v~~~~ 431 (433)
T 3bws_A 421 -LDHQIRVYRRD 431 (433)
T ss_dssp -TTTEEEEEEET
T ss_pred -CCCeEEEEEec
Confidence 39999999974
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.8e-30 Score=276.56 Aligned_cols=266 Identities=13% Similarity=0.059 Sum_probs=210.9
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeC
Q 012410 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (464)
Q Consensus 136 ~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl 215 (464)
.|+|+|..+++ ...+ .++.+||..+|++..+++. . ..+..|+|| |||++|++++.|++|++||+
T Consensus 144 ~~~p~~~~~vs----~~~d------~~V~v~D~~t~~~~~~i~~---g--~~~~~v~~s-pdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 144 DLDLPNLFSVT----LRDA------GQIALVDGDSKKIVKVIDT---G--YAVHISRMS-ASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp CCCGGGEEEEE----EGGG------TEEEEEETTTCCEEEEEEC---S--TTEEEEEEC-TTSCEEEEEETTSEEEEEET
T ss_pred ccCCCCEEEEE----EcCC------CeEEEEECCCceEEEEEec---C--cccceEEEC-CCCCEEEEECCCCeEEEEEC
Confidence 38899877666 3445 6999999999998654331 1 114589997 99999999999999999999
Q ss_pred --CCCeEEEEec-CCCEeEEEEeC----C---------CceeEEEEEcCCCcEEEEEeeC-----------CcceeeEEE
Q 012410 216 --KNYTMLYSIS-DKHVQEIKIRS----S---------SHVPLKILSIEDGTVLKVFYHL-----------LHRNKKVDF 268 (464)
Q Consensus 216 --~tg~~l~tl~-~~~V~~Vafs~----s---------~d~tIklWdi~tG~~l~tl~~~-----------~~~~~~V~F 268 (464)
++++++.++. ...++.|+|+| + .+.+|.|||.+|+++++++... ..++..|.|
T Consensus 208 ~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 208 WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp TSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred cCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEE
Confidence 8999999887 56799999998 6 3579999999999999998731 226788999
Q ss_pred EccCCCeEEE-EeCCCeEEEEECCCCcEEE-EcccCCCceEEEEEcCCCcEEEE-Ee-CCeEEEEeC-CCceEEEeccCC
Q 012410 269 IEQFNEKLLV-KQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLT-FR-NRTVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 269 ~~~~~~~lla-~s~D~tIkIWDv~tg~~l~-~l~gh~~~v~sv~FspdgqllaS-~s-D~TIklWd~-~Ge~l~tl~gH~ 343 (464)
+++ +..+++ ..++++|.+||+.+++++. +...+...+..++|+|||++|++ +. |++|++||. +|+++.+++...
T Consensus 288 s~~-~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 288 SHE-HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp CSS-SSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCC-CCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 985 445554 5699999999999987654 12235567899999999997655 45 899999999 799999998633
Q ss_pred CCcCCCCeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCC-------CeEEEEEccCCCCCCcccccCCCCC
Q 012410 344 LWHPDCNTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILT-------GKCLAKINATNCSPKVDDELGSSST 415 (464)
Q Consensus 344 ~~~~~~~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~t-------G~cl~tl~gh~~~~~~~~~~~~~~~ 415 (464)
..|+.- ..++ ++|+ |.++||++. .|++|+|||+.+ ++|+++|.+|..
T Consensus 367 ~ph~g~-g~~~-~~p~~g~~~~s~~~----------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~------------- 421 (543)
T 1nir_A 367 TPHPGR-GANF-VHPKYGPVWSTSHL----------GDGSISLIGTDPKNHPQYAWKKVAELQGQGG------------- 421 (543)
T ss_dssp SBCCTT-CEEE-EETTTEEEEEEEBS----------SSSEEEEEECCTTTCTTTBTSEEEEEECSCS-------------
T ss_pred CCCCCC-Cccc-CCCCCccEEEeccC----------CCceEEEEEeCCCCCchhcCeEEEEEEcCCC-------------
Confidence 222211 2233 5777 788888752 289999999999 999999999986
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEee-------CCCcEEeccC
Q 012410 416 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-------RHGLVHVWSN 464 (464)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-------~DgtVrlWd~ 464 (464)
.+..|+|+|||+.|++++ .+++|+|||.
T Consensus 422 ---------------------~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 422 ---------------------GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp ---------------------CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred ---------------------CceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 677899999999999998 3889999983
No 127
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-30 Score=282.43 Aligned_cols=250 Identities=11% Similarity=0.027 Sum_probs=193.4
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecc--cccEeeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCCcccceeeE
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~--~g~~l~~ln~~~~~~i~Sv~fs~~--g~~l~svSa~~sddfs~L~~~ti 163 (464)
+|..+.+. |++|++++.+|.+++|++. +++.+..+ .+|...|+++.|+|+ |+.|+++| .| +++
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s----~D------g~I 79 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCS----YD------GKV 79 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEE----TT------SCE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEe----CC------CeE
Confidence 45555554 8999999999999999987 67788888 458889999999998 99999944 55 699
Q ss_pred EEEEeccCCC--CCcccceeeccccCceEEEEeCCC--CcEEEEecCCCcEEEEeCCCCeEE--EEe--cCCCEeEEEEe
Q 012410 164 KIEYIRRGKP--DSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTML--YSI--SDKHVQEIKIR 235 (464)
Q Consensus 164 ~l~~i~~G~~--~~~~~l~~~~~~~~~~~VaFs~pd--Gk~LaSgs~D~tiKlWdl~tg~~l--~tl--~~~~V~~Vafs 235 (464)
++|++.+|+. ...+.. +...+.+|+|+ |+ |+.|++|+.|++|++||+.++.+. ..+ +...|.+++|+
T Consensus 80 ~vwd~~~~~~~~~~~~~~----h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~ 154 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAV----HSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (753)
T ss_dssp EEEEEETTEEEEEEEECC----CSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEEC
T ss_pred EEEECCCCcccccccccC----CCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEec
Confidence 9999998863 221221 22445589997 88 999999999999999999887432 222 24567777776
Q ss_pred CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC----cEEEEcccCCCceEEEEE
Q 012410 236 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA----ELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 236 ~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg----~~l~~l~gh~~~v~sv~F 311 (464)
|..-.+. +. ....+ ++..+++++.|++|+|||++++ +++.++.+|...|.+++|
T Consensus 155 p~~~~~~-------~~--------------~~~~~-d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 212 (753)
T 3jro_A 155 PATIEED-------GE--------------HNGTK-ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212 (753)
T ss_dssp CCC------------------------------CG-GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred Ccccccc-------cc--------------cccCC-CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe
Confidence 6411100 00 00011 3577888999999999999988 677889999999999999
Q ss_pred cCC---CcEEEEEe-CCeEEEEeC-CCc-----eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 312 LYE---NQLFLTFR-NRTVAVWNF-RGE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 312 spd---gqllaS~s-D~TIklWd~-~Ge-----~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
+|+ |++|+|++ |++|++||+ +++ .+....+|... |++++|+|||++|++|+. ||
T Consensus 213 sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~l~~spdg~~l~s~s~-----------Dg 276 (753)
T 3jro_A 213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DN 276 (753)
T ss_dssp CCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC-----CCCEEECTTTCCEEEECS-----------SS
T ss_pred ccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc-----eEEEEEcCCCCEEEEEcC-----------CC
Confidence 999 99999999 999999999 453 33444567766 789999999999999986 99
Q ss_pred eEEEEeCCCCeE
Q 012410 382 SINVSSILTGKC 393 (464)
Q Consensus 382 tIklWdi~tG~c 393 (464)
+|+|||+.++..
T Consensus 277 ~I~vwd~~~~~~ 288 (753)
T 3jro_A 277 KVTLWKENLEGK 288 (753)
T ss_dssp CEECCBCCSSSC
T ss_pred EEEEEecCCCCC
Confidence 999999986543
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=8.8e-29 Score=252.84 Aligned_cols=276 Identities=10% Similarity=0.096 Sum_probs=213.0
Q ss_pred cCC----eEEeeec--ccccEee--EeecCCCceEEEEEEee--------------CCCEEEEEEeecCCCCcccceeeE
Q 012410 106 HSG----VCAAFSR--ETNRRIC--FLNVSPDEVIRSLFYNK--------------NNDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 106 ~~g----~~~~~~~--~~g~~l~--~ln~~~~~~i~Sv~fs~--------------~g~~l~svSa~~sddfs~L~~~ti 163 (464)
.+| .+++||+ .+|+++. .+. +|...++.+++++ ++..++.++....++ ...++
T Consensus 87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~----~~~~i 161 (415)
T 2hqs_A 87 PDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQ----FPYEL 161 (415)
T ss_dssp TTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSS----CCEEE
T ss_pred CCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCC----ccceE
Confidence 456 8999999 8999884 474 4777789888886 377788877442221 11599
Q ss_pred EEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC---cEEEEeCCCCeEEEEec-CCCEeEEEEeCCC-
Q 012410 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS- 238 (464)
Q Consensus 164 ~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~---tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~- 238 (464)
++||+..+. ... +.. +...+.+++|| |||+.||+++.|+ +|++||+++|++..... ...+.+++|+|++
T Consensus 162 ~i~d~~g~~-~~~--l~~--~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~ 235 (415)
T 2hqs_A 162 RVSDYDGYN-QFV--VHR--SPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 235 (415)
T ss_dssp EEEETTSCS-CEE--EEE--ESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS
T ss_pred EEEcCCCCC-CEE--EeC--CCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC
Confidence 999986433 222 211 22455689998 9999999999986 99999999999865332 5679999999852
Q ss_pred ----------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeC-CC--eEEEEECCCCcEEEEcccCCCc
Q 012410 239 ----------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 239 ----------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~-D~--tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
+..|++||+++|++ ..+..+...+.+++|+|+ +..|++++. |+ .|.+||+.++++. .+..|...
T Consensus 236 ~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~ 312 (415)
T 2hqs_A 236 KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQ 312 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSE
T ss_pred EEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC-CCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCc
Confidence 34599999999987 456554467899999994 666777774 55 6777799998854 45556678
Q ss_pred eEEEEEcCCCcEEEEEe-C---CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 012410 306 PSAFIFLYENQLFLTFR-N---RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 306 v~sv~FspdgqllaS~s-D---~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
+.+++|||||++|++++ + .+|.+||+ +|++ ..+..|. . +.+++|+|||++|++++. |
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~-----~~~~~~spdg~~l~~~s~-----------~ 374 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-L-----DETPSLAPNGTMVIYSSS-----------Q 374 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-S-----CEEEEECTTSSEEEEEEE-----------E
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-C-----cCCeEEcCCCCEEEEEEc-----------C
Confidence 89999999999999888 5 58999999 5776 5677774 4 789999999999999886 4
Q ss_pred C---eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 381 G---SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 381 g---tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
+ .|.+||+ +|++++.|.+|.. .|++++|||.-+
T Consensus 375 ~~~~~l~~~d~-~g~~~~~l~~~~~----------------------------------~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 GMGSVLNLVST-DGRFKARLPATDG----------------------------------QVKFPAWSPYLH 410 (415)
T ss_dssp TTEEEEEEEET-TSCCEEECCCSSS----------------------------------EEEEEEECCCCC
T ss_pred CCccEEEEEEC-CCCcEEEeeCCCC----------------------------------CCcCCccccccc
Confidence 4 8999997 5888999999986 899999999765
No 129
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=3e-29 Score=255.01 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=196.1
Q ss_pred cccceEEEEec---cceeehhccCCeEEeeeccc----------ccEeeEeecCCCceEEEEEEeeCCC-EEEEEEeecC
Q 012410 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRET----------NRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYAS 152 (464)
Q Consensus 87 ~~s~v~~~~~a---g~~l~~l~~~g~~~~~~~~~----------g~~l~~ln~~~~~~i~Sv~fs~~g~-~l~svSa~~s 152 (464)
....|..+.+. +++|++.+.+|.+++|++.+ .+.+..+. +|...|.++.|+|++. .|++ ++
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s----~~ 201 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLS----AS 201 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEE----EC
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEE----Ee
Confidence 34456666665 57999999999999999877 67888885 5888899999999999 8888 45
Q ss_pred CCCcccceeeEEEEEeccCCCCCc----ccceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEecCC
Q 012410 153 DNFSSLKCRSTKIEYIRRGKPDSG----FALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK 227 (464)
Q Consensus 153 ddfs~L~~~ti~l~~i~~G~~~~~----~~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~ 227 (464)
.| ++++||++..+..... ...+. .+...+..|+|+ | ++.+|++++.|++|++||+.++..
T Consensus 202 ~d------g~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~-p~~~~~l~s~~~dg~i~i~d~~~~~~------- 266 (430)
T 2xyi_A 202 DD------HTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWH-LLHESLFGSVADDQKLMIWDTRNNNT------- 266 (430)
T ss_dssp TT------SCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCSCS-------
T ss_pred CC------CeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEe-CCCCCEEEEEeCCCeEEEEECCCCCC-------
Confidence 56 7999999988654211 11111 133445589998 6 889999999999999999986521
Q ss_pred CEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCCce
Q 012410 228 HVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTP 306 (464)
Q Consensus 228 ~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~~v 306 (464)
.+++.++..|...+.+++|+|.....+++++.|++|+|||+++ ++++.++.+|...|
T Consensus 267 ----------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v 324 (430)
T 2xyi_A 267 ----------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 324 (430)
T ss_dssp ----------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCE
T ss_pred ----------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCE
Confidence 1222333333466788888884223466789999999999998 67889999999999
Q ss_pred EEEEEcCCCc-EEEEEe-CCeEEEEeCC---------------CceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEec
Q 012410 307 SAFIFLYENQ-LFLTFR-NRTVAVWNFR---------------GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCK 368 (464)
Q Consensus 307 ~sv~Fspdgq-llaS~s-D~TIklWd~~---------------Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~ 368 (464)
.+++|+|+++ +|++++ |++|+|||+. .+++..+.+|... |++++|+|+++ +|||++.
T Consensus 325 ~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-----ISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC-----EEEEEECSSSTTEEEEEET
T ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC-----ceEEEECCCCCCEEEEEEC
Confidence 9999999995 799999 9999999993 2789999999988 89999999999 9999987
Q ss_pred CCCccccccCCCCeEEEEeCCCCe
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
||+|+||++.++.
T Consensus 400 -----------dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 400 -----------DNIMQVWQMAENV 412 (430)
T ss_dssp -----------TSEEEEEEECHHH
T ss_pred -----------CCCEEEeEccccc
Confidence 9999999986654
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=8.4e-29 Score=265.88 Aligned_cols=303 Identities=7% Similarity=0.052 Sum_probs=229.1
Q ss_pred ceEEEEec--cceeehhcc-CC-----eEEeeecccccEeeEeecCCC-----------------------ceEEEEEEe
Q 012410 90 KVIEIVAA--RDIVFALAH-SG-----VCAAFSRETNRRICFLNVSPD-----------------------EVIRSLFYN 138 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~-~g-----~~~~~~~~~g~~l~~ln~~~~-----------------------~~i~Sv~fs 138 (464)
.+..+.++ |+.|+..+. +| .+.+|++.+|+....+..... ..|.+++||
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 45566666 889998888 88 999999999988777644211 237899999
Q ss_pred eCCCEEEEEEeecCCCCcccceeeEEEEEeccC---CCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeC
Q 012410 139 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG---KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (464)
Q Consensus 139 ~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G---~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl 215 (464)
|||+.|++++ . .++.+|++.+| ++. ++.. +...+..++|| |||+.||+++. ++|++||+
T Consensus 118 pDg~~l~~~~----~-------~~i~~~d~~~~~~~~~~---~l~~--~~~~~~~~~~S-PDG~~la~~~~-~~i~~~d~ 179 (741)
T 2ecf_A 118 PDAQRLLFPL----G-------GELYLYDLKQEGKAAVR---QLTH--GEGFATDAKLS-PKGGFVSFIRG-RNLWVIDL 179 (741)
T ss_dssp TTSSEEEEEE----T-------TEEEEEESSSCSTTSCC---BCCC--SSSCEEEEEEC-TTSSEEEEEET-TEEEEEET
T ss_pred CCCCEEEEEe----C-------CcEEEEECCCCCcceEE---Eccc--CCcccccccCC-CCCCEEEEEeC-CcEEEEec
Confidence 9999999955 2 58999999988 542 1222 12445689998 99999999884 58999999
Q ss_pred CCCeEEEEecC--CC----------------EeEEEEeCCC--------ce-----------------------------
Q 012410 216 KNYTMLYSISD--KH----------------VQEIKIRSSS--------HV----------------------------- 240 (464)
Q Consensus 216 ~tg~~l~tl~~--~~----------------V~~Vafs~s~--------d~----------------------------- 240 (464)
.+|++...... .. +.+++|||++ |.
T Consensus 180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 99988754432 11 4779998852 22
Q ss_pred ----eEEEEEcCC-CcEEEEEee--CCcceeeEEEEccCCCeEEEEe-----CCCeEEEEECCCCcEEEEcccCCC----
Q 012410 241 ----PLKILSIED-GTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQ-----ENENLQILDVRNAELMEVSRTEFM---- 304 (464)
Q Consensus 241 ----tIklWdi~t-G~~l~tl~~--~~~~~~~V~F~~~~~~~lla~s-----~D~tIkIWDv~tg~~l~~l~gh~~---- 304 (464)
.|.+||+++ |++...... +...+..++| | ++..|++.+ .+.+|.+||+.+|++..++.+|..
T Consensus 260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 788999999 987665432 3456799999 8 466777654 467899999999999988877653
Q ss_pred ceEEEEEcCCCcEEEEEe-CCeEEEEeC--CCceEEEeccCCCCcCCCCeeEE-EECCCCCEEEEEecCCCccccccCCC
Q 012410 305 TPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNI-YITSDQDLIISYCKAEPEDQWMEGSA 380 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~sv-afSpDg~~LaSgs~~~~~~~~~~s~D 380 (464)
.+.+++|||||+++++++ |++++||.+ +|+ +..|.+|... |.++ +|||||+.|+..+. .|
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~-----v~~~~~~s~dg~~l~~~~~----------~~ 401 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS-----VDELLAVDEKAGLAYFRAG----------IE 401 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC-----EEEEEEEETTTTEEEEEEC----------SS
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE-----EEeEeEEeCCCCEEEEEEe----------CC
Confidence 346889999999999988 999999876 577 8899998655 7777 59999998765442 14
Q ss_pred C--eEEEEeCCC-CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC-
Q 012410 381 G--SINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH- 456 (464)
Q Consensus 381 g--tIklWdi~t-G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D- 456 (464)
+ +++||++.. |++++.|.+ .. .+.+++|||||+.|+....+
T Consensus 402 ~~~~~~l~~~~~~g~~~~~l~~-~~----------------------------------~~~~~~~spdg~~l~~~~~~~ 446 (741)
T 2ecf_A 402 SARESQIYAVPLQGGQPQRLSK-AP----------------------------------GMHSASFARNASVYVDSWSNN 446 (741)
T ss_dssp CTTCBEEEEEETTCCCCEECCC-SC----------------------------------SEEEEEECTTSSEEEEEEEET
T ss_pred CCceEEEEEEEcCCCCeeeccc-CC----------------------------------CceEEEECCCCCEEEEEecCC
Confidence 4 999999864 787888766 32 78899999999998876543
Q ss_pred ---CcEEecc
Q 012410 457 ---GLVHVWS 463 (464)
Q Consensus 457 ---gtVrlWd 463 (464)
..+.+|+
T Consensus 447 ~~p~~~~l~~ 456 (741)
T 2ecf_A 447 STPPQIELFR 456 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCeEEEEE
Confidence 3466664
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=1.6e-26 Score=222.83 Aligned_cols=264 Identities=8% Similarity=0.016 Sum_probs=208.6
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCc-EEEEecCCCc
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDSI 209 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk-~LaSgs~D~t 209 (464)
-+..++|+|+|+.+.+++..+. ..-+..++.+||..+|+....++. -..|..++|+ |||+ +++++..+++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~s-~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHN-----DLKPFGATIN-NTTQTLWFGNTVNSA 112 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEE-----SSCCCSEEEE-TTTTEEEEEETTTTE
T ss_pred CccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEec-----CCCcceEEEC-CCCCEEEEEecCCCE
Confidence 4789999999999988663321 111126899999999887543221 1346689998 8998 5566677899
Q ss_pred EEEEeCCCCeEEEEecCC-----------CEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 210 YKVFDLKNYTMLYSISDK-----------HVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 210 iKlWdl~tg~~l~tl~~~-----------~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
|.+||+++++.+.++... .+.+++|+|+ .+..|.+||+++|+++.++..+......++|
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 999999999998877632 2788999884 3578999999999999999844455789999
Q ss_pred EccCCCeEEEEeCCCeEEEEECCCCcEEEEccc----CCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEecc
Q 012410 269 IEQFNEKLLVKQENENLQILDVRNAELMEVSRT----EFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFED 341 (464)
Q Consensus 269 ~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g----h~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~g 341 (464)
+| ++.++++++.|+.|.+||+.+++.+..+.. +...+.+++|+|||+.++.++ +++|.+||. +|+++..+..
T Consensus 193 s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 193 DS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp ET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99 467788888999999999999999887653 555788899999999666655 699999999 7999998876
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccc
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 421 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~ 421 (464)
+.. ..++|+|||++|+.++. .+++|.+||+.+|+.+.++..+.
T Consensus 272 ~~~-------~~~~~s~dg~~l~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~-------------------- 314 (353)
T 3vgz_A 272 PES-------LAVLFNPARNEAYVTHR----------QAGKVSVIDAKSYKVVKTFDTPT-------------------- 314 (353)
T ss_dssp SSC-------CCEEEETTTTEEEEEET----------TTTEEEEEETTTTEEEEEEECCS--------------------
T ss_pred CCC-------ceEEECCCCCEEEEEEC----------CCCeEEEEECCCCeEEEEEecCC--------------------
Confidence 542 35999999996655542 38999999999999999987654
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 422 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 422 ~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
.+++++|+|||+.|+.++.+
T Consensus 315 ---------------~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 315 ---------------HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ---------------EEEEEEECTTSCEEEEEEEC
T ss_pred ---------------CCCeEEEcCCCCEEEEEEcc
Confidence 67899999999988877665
No 132
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.96 E-value=3.3e-27 Score=225.10 Aligned_cols=273 Identities=9% Similarity=0.023 Sum_probs=212.1
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCc-eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~-~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
++|++...++.+.+||..+++.+..+...+.. .+.+++|+|+|+.+++++ ..+ .++.+||+.+|+....+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~------~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS------ESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT------TEEEEEETTTCCEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---CCC------CeEEEEECCCCCeEeeE
Confidence 67888889999999999999999988654432 378999999998876643 333 58999999998875332
Q ss_pred cceee-ccccCceEEEEeCCCCcEEEEec------------CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCC-----
Q 012410 178 ALFES-ESLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS----- 238 (464)
Q Consensus 178 ~l~~~-~~~~~~~~VaFs~pdGk~LaSgs------------~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~----- 238 (464)
..-.. .+-..|..++|+ |||+.|+.++ .|+.|.+||+++++.+..+. ...+..++|+|+.
T Consensus 73 ~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 151 (337)
T 1pby_B 73 DLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG 151 (337)
T ss_dssp ECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEE
T ss_pred EcCCcccccccccceEEC-CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEE
Confidence 21110 001256689997 8999998886 68999999999999988776 5678899999864
Q ss_pred -ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCC-----------------------eEEEEECCCC
Q 012410 239 -HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE-----------------------NLQILDVRNA 293 (464)
Q Consensus 239 -d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~-----------------------tIkIWDv~tg 293 (464)
+..|.+||+++|+++..+... .....++|+|+ +..+++.+ .++ .|.+||+.++
T Consensus 152 ~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 152 LGRDLHVMDPEAGTLVEDKPIQ-SWEAETYAQPD-VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp ESSSEEEEETTTTEEEEEECST-TTTTTTBCCCB-CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred eCCeEEEEECCCCcEeeeeecc-ccCCCceeCCC-ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 468999999999999888743 21234467674 45554443 333 4789999999
Q ss_pred cEEE-EcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 012410 294 ELME-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 371 (464)
Q Consensus 294 ~~l~-~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~ 371 (464)
++.. .+..|...+.+++|+|||+.++++ |++|.+||+ +|+++.++..+.. +++++|+|||++|+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~--- 299 (337)
T 1pby_B 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHS------YYSVNVSTDGSTVWLGGA--- 299 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSC------CCEEEECTTSCEEEEESB---
T ss_pred CceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCc------eeeEEECCCCCEEEEEcC---
Confidence 9863 344566778899999999999888 799999999 6999988875532 578999999999998865
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 372 EDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 372 ~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
|++|++||+.+|+.++++..+.
T Consensus 300 --------~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 300 --------LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp --------SSEEEEEETTTCCEEEEEECGG
T ss_pred --------CCcEEEEECcCCcEEEEEEcCC
Confidence 8999999999999999997764
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.6e-27 Score=241.90 Aligned_cols=274 Identities=12% Similarity=0.128 Sum_probs=195.4
Q ss_pred eEEEEEEeeCCCEEE-EEEeecCCCCcccceeeEEEEEe--ccCCCCCc--ccceeeccccCceEEEEeC----------
Q 012410 131 VIRSLFYNKNNDSLI-TVSVYASDNFSSLKCRSTKIEYI--RRGKPDSG--FALFESESLKWPGFVEFDD---------- 195 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~-svSa~~sddfs~L~~~ti~l~~i--~~G~~~~~--~~l~~~~~~~~~~~VaFs~---------- 195 (464)
.+....|++.|..++ +.+.....+ +---.+++|||+ .+|++..+ +..+. .++..++|+.
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~--G~~~~~i~lwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPD--GSYNVAYQLVDTGGAPGTVLAQNSYKVNK----QWLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTT--SCEEEEEEEEECSSSTTCEEEEEEEEECG----GGHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCC--CeEEEEEEEEeCCCCCCCEEeeeEEEcCh----hHHHHHHHHHHHHHHHHHcC
Confidence 455666667765444 533322222 000038999999 99986422 22222 1122344431
Q ss_pred ---CCCcEEEEecCC------CcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------Cc---eeEEEEEcCCCcEE
Q 012410 196 ---VNGKVLTYSAQD------SIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SH---VPLKILSIEDGTVL 253 (464)
Q Consensus 196 ---pdGk~LaSgs~D------~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d---~tIklWdi~tG~~l 253 (464)
+.+..|++++.+ ++|++||+.++ ++..+. ...|.+++|||+ .+ .+|++||+++|++.
T Consensus 138 ~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 138 IKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp SCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred CCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE
Confidence 125677777664 79999999754 444443 678999999985 22 48999999999987
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEE-EeCCC--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC--eE
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLV-KQENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TV 326 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla-~s~D~--tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~--TI 326 (464)
. +..+...+..++|+|+ +.+|+. ++.|+ .|++||+.++++ ..+.+|...+.+++|+|||+.|+.++ ++ .|
T Consensus 217 ~-l~~~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 217 Q-VASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp E-EECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred E-eecCCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 5 4444467899999994 566774 55555 499999999987 56777888899999999999988887 44 67
Q ss_pred EEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 327 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 327 klWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
.+||+. |+ +..+..|..+ +.+++|||||++|++++.. ..+.+|++||+.+|++. .+..|.
T Consensus 294 ~~~d~~~~~-~~~l~~~~~~-----~~~~~~spdG~~l~~~~~~--------~g~~~i~~~d~~~~~~~-~l~~~~---- 354 (415)
T 2hqs_A 294 YKVNINGGA-PQRITWEGSQ-----NQDADVSSDGKFMVMVSSN--------GGQQHIAKQDLATGGVQ-VLSSTF---- 354 (415)
T ss_dssp EEEETTSSC-CEECCCSSSE-----EEEEEECTTSSEEEEEEEC--------SSCEEEEEEETTTCCEE-ECCCSS----
T ss_pred EEEECCCCC-EEEEecCCCc-----ccCeEECCCCCEEEEEECc--------CCceEEEEEECCCCCEE-EecCCC----
Confidence 777985 55 4567777665 7899999999999998751 11469999999999984 565553
Q ss_pred cccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC---cEEeccC
Q 012410 406 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG---LVHVWSN 464 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg---tVrlWd~ 464 (464)
.+.+++|+|||+.|++++.|+ .|.+||.
T Consensus 355 -------------------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 355 -------------------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp -------------------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred -------------------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 678999999999999999888 7999973
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=3.4e-28 Score=259.90 Aligned_cols=272 Identities=11% Similarity=0.076 Sum_probs=196.4
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC----
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---- 207 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D---- 207 (464)
+.+++|+|||+++++ + .+ .++++|++.+|+....+..+.. ....+.+++|| |||+.||+++.|
T Consensus 19 ~~~~~~spdg~~~~~----~-~d------g~i~~~d~~~g~~~~~~~~~~~-~~~~v~~~~~S-pDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR----E-QK------GTVRLWNVETNTSTVLIEGKKI-ESLRAIRYEIS-PDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCBSSSSCBCCC----C-SS------SCEEEBCGGGCCCEEEECTTTT-TTTTCSEEEEC-TTSSEEEEEESCCCCS
T ss_pred ccccEEcCCCcEEEE----e-CC------CCEEEEECCCCcEEEEeccccc-cccccceEEEC-CCCCEEEEEecCccce
Confidence 678999999996644 2 34 5999999999987432221110 00125689998 999999999875
Q ss_pred -----CcEEEEeCCCCeEEEEec-----CCCEeEEEEeCCC-------ceeEEEEEcCCCcEEEEEeeCCc---------
Q 012410 208 -----SIYKVFDLKNYTMLYSIS-----DKHVQEIKIRSSS-------HVPLKILSIEDGTVLKVFYHLLH--------- 261 (464)
Q Consensus 208 -----~tiKlWdl~tg~~l~tl~-----~~~V~~Vafs~s~-------d~tIklWdi~tG~~l~tl~~~~~--------- 261 (464)
++|.|||+.+|++ ..+. ...|..++|||++ +..|.+||+.+|++.+....+..
T Consensus 86 ~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccc
Confidence 7788999999987 3333 1248899999963 36899999999998876654222
Q ss_pred ---------ceeeEEEEccCCCeEEEEeCCC----------------------------------eEEEEECCCCcEEEE
Q 012410 262 ---------RNKKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVRNAELMEV 298 (464)
Q Consensus 262 ---------~~~~V~F~~~~~~~lla~s~D~----------------------------------tIkIWDv~tg~~l~~ 298 (464)
++..++|+| ++.+|+.++.|+ +|++||+.++++...
T Consensus 165 ~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~ 243 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE 243 (723)
T ss_dssp HHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE
T ss_pred eeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE
Confidence 227899999 466777776443 899999999998666
Q ss_pred cccC------CCceEEEEEcCCCcEEEEEe-C----CeEEEEeC-CCceEEEecc-CCCCcCCCCeeEEEECCCCCEEEE
Q 012410 299 SRTE------FMTPSAFIFLYENQLFLTFR-N----RTVAVWNF-RGELVTSFED-HLLWHPDCNTNNIYITSDQDLIIS 365 (464)
Q Consensus 299 l~gh------~~~v~sv~FspdgqllaS~s-D----~TIklWd~-~Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~LaS 365 (464)
+..| ...+.+++|||||++|++.+ . .+|.+||+ +|++...+.. |..|+... ..+++|||||+.|+.
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ-NEEPVFSKDGRKFFF 322 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC-CCCCEECTTSCSEEE
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc-CCCceEcCCCCeEEE
Confidence 6654 56789999999999998775 2 58999999 6999887765 45562200 027899999998886
Q ss_pred E-ecCCCccccccCCCC------eEEEEe-CCCCe--EEEEEccCCCCCCcccccCCCCCCccccccccccccccccccc
Q 012410 366 Y-CKAEPEDQWMEGSAG------SINVSS-ILTGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 435 (464)
Q Consensus 366 g-s~~~~~~~~~~s~Dg------tIklWd-i~tG~--cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (464)
. +. .|+ .|.+|| ..+|+ |+..|..+..
T Consensus 323 ~~~~----------~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~--------------------------------- 359 (723)
T 1xfd_A 323 IRAI----------PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW--------------------------------- 359 (723)
T ss_dssp EEEE----------CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSS---------------------------------
T ss_pred EEec----------ccCCCcceeEEEEEeccCCCCccceeEeecCCe---------------------------------
Confidence 5 32 255 577778 44554 3666643322
Q ss_pred cCEEE-EEEcCCCCEEEEeeCC---CcEEecc
Q 012410 436 EDITS-LFYDEERNEIYTGNRH---GLVHVWS 463 (464)
Q Consensus 436 ~~V~s-lafspDg~~LaSgs~D---gtVrlWd 463 (464)
.+.. ++|||||+.||..+.+ ++++||+
T Consensus 360 -~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 360 -DVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp -CEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred -EEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 4544 6999999999866555 8899996
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=6.5e-26 Score=218.21 Aligned_cols=272 Identities=8% Similarity=0.084 Sum_probs=192.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC-CCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-~~~ 176 (464)
+.++++...++.+.+||..+|+.+..+..+ .... +++|+|+|+.|++++ ..+ .++.+||+.+|++ ...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~--~~~-------~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTS--DFC-------QTLVQIETQLEPPKVVA 78 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEE--STT-------CEEEEEECSSSSCEEEE
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEe--CCC-------CeEEEEECCCCceeEEe
Confidence 445667778899999999999999988654 4446 999999999887755 333 4899999999886 321
Q ss_pred ccceeeccccCceE-EEEeCCCCcEEEEecCCC---cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcE
Q 012410 177 FALFESESLKWPGF-VEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTV 252 (464)
Q Consensus 177 ~~l~~~~~~~~~~~-VaFs~pdGk~LaSgs~D~---tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~ 252 (464)
+.. -..|.. ++|+ |||+.|+.+..++ +|++||+++++++.++.
T Consensus 79 ---~~~--~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--------------------------- 125 (331)
T 3u4y_A 79 ---IQE--GQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--------------------------- 125 (331)
T ss_dssp ---EEE--CSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE---------------------------
T ss_pred ---ccc--CCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEE---------------------------
Confidence 221 134556 9997 8999998554442 78888877666554432
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEE-eCCCe-EEEEECCCCcEE-----EEcccCCCceEEEEEcCCCc-EEEEEe-C
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVK-QENEN-LQILDVRNAELM-----EVSRTEFMTPSAFIFLYENQ-LFLTFR-N 323 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~t-IkIWDv~tg~~l-----~~l~gh~~~v~sv~Fspdgq-llaS~s-D 323 (464)
.. .....++|+|+ +.+++++ ..+++ |++||+.....+ +.+ .+...+..++|+|||+ ++++.. +
T Consensus 126 -----~~-~~~~~~~~spd-g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 126 -----IP-YDAVGIAISPN-GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp -----CC-TTEEEEEECTT-SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTT
T ss_pred -----CC-CCccceEECCC-CCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCC
Confidence 11 22356777773 4456665 46677 999998764432 222 2335689999999999 455666 9
Q ss_pred CeEEEEeC-CCce---EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEE
Q 012410 324 RTVAVWNF-RGEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKI 397 (464)
Q Consensus 324 ~TIklWd~-~Ge~---l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl 397 (464)
++|.+||+ +|++ +.++..+.. +..++|+|||++|+.++. .+++|.+||+.+|+. +.++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~~~------~~~~~~spdg~~l~v~~~----------~~~~i~~~d~~~~~~~~~~~~ 261 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTNNL------PGTIVVSRDGSTVYVLTE----------STVDVFNFNQLSGTLSFVKSF 261 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECSSC------CCCEEECTTSSEEEEECS----------SEEEEEEEETTTTEEEEEEEE
T ss_pred CeEEEEECCCCcccceeeeccCCCC------CceEEECCCCCEEEEEEc----------CCCEEEEEECCCCceeeeccc
Confidence 99999999 6998 888886633 568999999997766543 278999999999998 6666
Q ss_pred ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEeccC
Q 012410 398 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 398 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd~ 464 (464)
..+-. .. +.....+.+++|+|||+.|+.++ .+++|++||.
T Consensus 262 ~~~~~-~~--------------------------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 262 GHGLL-ID--------------------------PRPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp ECCCC-CC--------------------------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ccccc-cC--------------------------CCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 54421 00 00011235689999999987555 5679999984
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.8e-27 Score=255.45 Aligned_cols=278 Identities=11% Similarity=0.090 Sum_probs=207.8
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec-----------------cc---cCc
Q 012410 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-----------------SL---KWP 188 (464)
Q Consensus 129 ~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-----------------~~---~~~ 188 (464)
...+.+++|||||+.|++++. .++ +-...++.+|++.+|+....+...... .. ..+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~--~d~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRG--KDS--DRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEEC--CSS--CTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEecCCCEEEEEec--cCC--CCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 345899999999999999663 111 001248999999999864211111000 00 113
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCC---eEEEEec--CCCEeEEEEeCCC-------ceeEEEEEcCCCcEEEEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKIRSSS-------HVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg---~~l~tl~--~~~V~~Vafs~s~-------d~tIklWdi~tG~~l~tl 256 (464)
..++|| |||+.|++++. ++|++||+.++ ++. .+. ...+..++|||++ +..|.+||+.+|++.+..
T Consensus 112 ~~~~~S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 112 VDYQWS-PDAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CCCEEC-TTSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred ceeEEC-CCCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence 479998 99999999886 89999999998 543 333 4679999999963 358999999999887655
Q ss_pred eeCCcc----------------eeeEEEEccCCCeEEEEeCCC---------------------------------eEEE
Q 012410 257 YHLLHR----------------NKKVDFIEQFNEKLLVKQENE---------------------------------NLQI 287 (464)
Q Consensus 257 ~~~~~~----------------~~~V~F~~~~~~~lla~s~D~---------------------------------tIkI 287 (464)
...... +..++|+| ++.+|++++.|+ +|.+
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 432221 47899999 467788877665 8999
Q ss_pred EECCC-CcEEEEcc--cCCCceEEEEEcCCCcEEEEEe------CCeEEEEeC-CCceEEEeccCCC-CcCCCCeeEEEE
Q 012410 288 LDVRN-AELMEVSR--TEFMTPSAFIFLYENQLFLTFR------NRTVAVWNF-RGELVTSFEDHLL-WHPDCNTNNIYI 356 (464)
Q Consensus 288 WDv~t-g~~l~~l~--gh~~~v~sv~FspdgqllaS~s------D~TIklWd~-~Ge~l~tl~gH~~-~~~~~~v~svaf 356 (464)
||+.+ +++..... +|...+.+++| |||+.|+.++ +.+|.+||+ +|++...+.+|.. |+. .+.+++|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~~~~~~ 344 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP--LHNSLRF 344 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC--CCSCCEE
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC--cCCceEE
Confidence 99999 99877654 47788999999 9999998764 358999999 6999988887764 421 1468999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccc
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 435 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 435 (464)
||||++|++++. ||+++||.+. +|+ +..|.+|..
T Consensus 345 spdg~~~~~~~~-----------~g~~~l~~~~~~~~-~~~l~~~~~--------------------------------- 379 (741)
T 2ecf_A 345 LDDGSILWSSER-----------TGFQHLYRIDSKGK-AAALTHGNW--------------------------------- 379 (741)
T ss_dssp CTTSCEEEEECT-----------TSSCEEEEECSSSC-EEESCCSSS---------------------------------
T ss_pred CCCCeEEEEecC-----------CCccEEEEEcCCCC-eeeeeecce---------------------------------
Confidence 999999988875 8888888765 577 888888764
Q ss_pred cCEEEE-EEcCCCCEEE-EeeCCC--cEEecc
Q 012410 436 EDITSL-FYDEERNEIY-TGNRHG--LVHVWS 463 (464)
Q Consensus 436 ~~V~sl-afspDg~~La-Sgs~Dg--tVrlWd 463 (464)
.|.++ +|||||+.|+ +++.|+ +++||+
T Consensus 380 -~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 380 -SVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp -CEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred -EEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 78887 5999999875 566666 899996
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=3.2e-27 Score=252.62 Aligned_cols=293 Identities=11% Similarity=0.067 Sum_probs=208.4
Q ss_pred cceeehhccCCeEEeeecccccEe-eEeecCCC-----------------ceEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRI-CFLNVSPD-----------------EVIRSLFYNKNNDSLITVSVYASDNFSSLK 159 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l-~~ln~~~~-----------------~~i~Sv~fs~~g~~l~svSa~~sddfs~L~ 159 (464)
|+.+.....+| + +||+.+|+.+ ..+ ..+. ..|.+++|||| ..++.++ +
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~----~------ 100 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT----Q------ 100 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE----T------
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeEEECCC-CeEEEEE----C------
Confidence 45555556677 6 9999999884 444 2233 34999999999 5555522 2
Q ss_pred eeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC-----CeEEEEec-C-CC----
Q 012410 160 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----YTMLYSIS-D-KH---- 228 (464)
Q Consensus 160 ~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t-----g~~l~tl~-~-~~---- 228 (464)
.++++||+.+|++. ++.. .-..+..++|| |||+.||++ .|++|++||+.+ |+...... . ..
T Consensus 101 -~~i~~~d~~~~~~~---~l~~--~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 101 -GGLVGFDMLARKVT---YLFD--TNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp -TEEEEEETTTTEEE---EEEC--CTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred -CEEEEEECCCCceE---EccC--CcccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 58999999888753 2222 12344579998 999999995 789999999999 88765433 2 22
Q ss_pred ----------EeEEEEeCC-----------------------------------------CceeEEEEEcCCCcEEEEEe
Q 012410 229 ----------VQEIKIRSS-----------------------------------------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 229 ----------V~~Vafs~s-----------------------------------------~d~tIklWdi~tG~~l~tl~ 257 (464)
+.+++|||+ .+..|.+||+++|++.....
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 478888874 23679999999998766543
Q ss_pred --eCCcceeeEEEEccCCCeEEEEeCCC-----eEEEEECCCCcEEE-Ecc-cCCC---ceEEEEEcC--CCcEEEEEe-
Q 012410 258 --HLLHRNKKVDFIEQFNEKLLVKQENE-----NLQILDVRNAELME-VSR-TEFM---TPSAFIFLY--ENQLFLTFR- 322 (464)
Q Consensus 258 --~~~~~~~~V~F~~~~~~~lla~s~D~-----tIkIWDv~tg~~l~-~l~-gh~~---~v~sv~Fsp--dgqllaS~s- 322 (464)
.+...+..++|+| ++..|++++.|+ +|++||+.+|+..+ ... ++.. .+.+++|+| ||++|++++
T Consensus 253 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 2334578999999 456677777665 99999999994444 332 2222 235789999 999999998
Q ss_pred CCeEEEEeC--CCceEEEeccCCCCcCCCCeeE-EEECCCCCEEEEEecCCCccccccCCCC----eEEEEeCCCCeEEE
Q 012410 323 NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKAEPEDQWMEGSAG----SINVSSILTGKCLA 395 (464)
Q Consensus 323 D~TIklWd~--~Ge~l~tl~gH~~~~~~~~v~s-vafSpDg~~LaSgs~~~~~~~~~~s~Dg----tIklWdi~tG~cl~ 395 (464)
|++++||++ +|++++.+.+|... +.+ ++|+|||+.|+..+. .++ .|..||+.+|+ +.
T Consensus 332 ~g~~~l~~~~~~~~~~~~l~~~~~~-----v~~~~~~spdg~~l~~~~~----------~~~~~~~~l~~~d~~~~~-~~ 395 (706)
T 2z3z_A 332 DGWNHLYLYDTTGRLIRQVTKGEWE-----VTNFAGFDPKGTRLYFEST----------EASPLERHFYCIDIKGGK-TK 395 (706)
T ss_dssp TSSCEEEEEETTSCEEEECCCSSSC-----EEEEEEECTTSSEEEEEES----------SSCTTCBEEEEEETTCCC-CE
T ss_pred CCccEEEEEECCCCEEEecCCCCeE-----EEeeeEEcCCCCEEEEEec----------CCCCceEEEEEEEcCCCC-ce
Confidence 999999987 58999999988654 666 899999998876654 133 77888887776 45
Q ss_pred EEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC----CcEEeccC
Q 012410 396 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----GLVHVWSN 464 (464)
Q Consensus 396 tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D----gtVrlWd~ 464 (464)
.+. |.. .+.+++|||||+.|+.+..+ +.|++||.
T Consensus 396 ~l~-~~~----------------------------------~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 396 DLT-PES----------------------------------GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp ESC-CSS----------------------------------SEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred ecc-CCC----------------------------------ceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 553 443 78999999999999876544 56999973
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=1.2e-26 Score=215.21 Aligned_cols=264 Identities=8% Similarity=0.007 Sum_probs=189.3
Q ss_pred hccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceee
Q 012410 104 LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFES 182 (464)
Q Consensus 104 l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~ 182 (464)
...++.+.+||..+++..... . |...|.++.|+|+|+.|++. .+ ..+.+|++.+ |+.......+.
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~-~-~~~~v~~~~~spdg~~l~~~----~~-------~~i~~~d~~~~~~~~~~~~~~~- 83 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVW-Q-TPELFEAPNWSPDGKYLLLN----SE-------GLLYRLSLAGDPSPEKVDTGFA- 83 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEE-E-ESSCCEEEEECTTSSEEEEE----ET-------TEEEEEESSSCCSCEECCCTTC-
T ss_pred CCcceeEEEEeCCCCceeeec-c-CCcceEeeEECCCCCEEEEE----cC-------CeEEEEeCCCCCCceEeccccc-
Confidence 346789999998888877554 3 67779999999999999883 33 4899999998 87643222221
Q ss_pred ccccCceEEEEeCCCCcEEEEec--CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCC
Q 012410 183 ESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk~LaSgs--~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
...+..++|+ |||+.|++++ .|+.++||.+. +++++ .+.+...
T Consensus 84 --~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~------------------------------~~~~~-~~~~~~~- 128 (297)
T 2ojh_A 84 --TICNNDHGIS-PDGALYAISDKVEFGKSAIYLLP------------------------------STGGT-PRLMTKN- 128 (297)
T ss_dssp --CCBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEE------------------------------TTCCC-CEECCSS-
T ss_pred --cccccceEEC-CCCCEEEEEEeCCCCcceEEEEE------------------------------CCCCc-eEEeecC-
Confidence 1234479997 8999999998 44566666542 22222 1222221
Q ss_pred cceeeEEEEccCCCeEE-EEeCCCeEEEEEC--CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC--CC
Q 012410 261 HRNKKVDFIEQFNEKLL-VKQENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RG 333 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~ll-a~s~D~tIkIWDv--~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~--~G 333 (464)
..+..++|+|+ +..++ +++.|++++||++ .+++. ..+..|...+..++|+|||+.|+.++ |++++||++ .+
T Consensus 129 ~~~~~~~~spd-g~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 129 LPSYWHGWSPD-GKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp SSEEEEEECTT-SSEEEEEEEETTEEEEEEEETTTCCE-EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCccceEECCC-CCEEEEEECCCCceEEEEEECCCCcc-eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence 23566788874 55666 4678999999995 44554 56667778899999999999777654 899999997 58
Q ss_pred ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEEccCCCCCCcccccC
Q 012410 334 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELG 411 (464)
Q Consensus 334 e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gh~~~~~~~~~~~ 411 (464)
+.+..+..|... +..++|+|||++|+.++....+.......++.|.+||+.+|+. +..+.+|..
T Consensus 207 ~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~--------- 272 (297)
T 2ojh_A 207 SSVERITDSAYG-----DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG--------- 272 (297)
T ss_dssp SCEEECCCCSEE-----EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT---------
T ss_pred CCcEEEecCCcc-----cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc---------
Confidence 888999988765 7899999999999988751000000000136799999999876 555557775
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
.|.+++|+|||+.|++++.|.
T Consensus 273 -------------------------~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 -------------------------TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -------------------------TSCSCCBCTTSSEEEEEEECC
T ss_pred -------------------------ccccceECCCCCEEEEEEecc
Confidence 678899999999999888764
No 139
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.95 E-value=1e-26 Score=244.51 Aligned_cols=258 Identities=10% Similarity=-0.020 Sum_probs=193.5
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ- 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~- 206 (464)
+...|++|+|+|||+.||++|. . + .+++||++..|++.. ++......+.+++|| || ++|++++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~--~-~------g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~s-pd-~~l~~~~~~ 84 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGF--S-E------GSVNAYLYDGGETVK----LNREPINSVLDPHYG-VG-RVILVRDVS 84 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEE--E-T------TEEEEEEEETTEEEE----CCSSCCSEECEECTT-CS-EEEEEEECS
T ss_pred hccchheeecCCCCCeEEEEEc--c-C------CceeEEEEcCCCcEe----eecccccccccccCC-CC-eEEEEeccC
Confidence 3456999999999999999762 1 3 589999997776531 111111233479997 89 88887765
Q ss_pred --CCcEEEEeCCC---CeEEEEec-CCCEeEEEEeCCC---------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc
Q 012410 207 --DSIYKVFDLKN---YTMLYSIS-DKHVQEIKIRSSS---------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 207 --D~tiKlWdl~t---g~~l~tl~-~~~V~~Vafs~s~---------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~ 271 (464)
+..++||.+.. |... .+. ...+...+|+|+. +..+.|||+++|++.+...+.. .+++|+|+
T Consensus 85 ~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spD 160 (582)
T 3o4h_A 85 KGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIR 160 (582)
T ss_dssp TTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEE
T ss_pred CCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCC
Confidence 66778876543 3333 333 3334455666542 2344599999998877665432 89999994
Q ss_pred CCCeEEEEeCC----CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC--eEEEEeC-CCceEEEeccCC
Q 012410 272 FNEKLLVKQEN----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR--TVAVWNF-RGELVTSFEDHL 343 (464)
Q Consensus 272 ~~~~lla~s~D----~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~--TIklWd~-~Ge~l~tl~gH~ 343 (464)
+..|++++.| .+|++||+.+|++. .+.+|...+.+++|||||+.|+++. |+ +|.+||+ +|++. .+.+|.
T Consensus 161 -G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~ 237 (582)
T 3o4h_A 161 -GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS 237 (582)
T ss_dssp -TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred -CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence 5666656655 78999999999976 5678888899999999999999877 88 9999999 58877 888887
Q ss_pred CCcCCCCeeEEE--------ECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCC
Q 012410 344 LWHPDCNTNNIY--------ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 415 (464)
Q Consensus 344 ~~~~~~~v~sva--------fSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~ 415 (464)
.. +.+++ |||||+++++++. |++++||++ |+++.+ +..
T Consensus 238 ~~-----~~~~~~~~~~~~~~spdg~~~~~~~~-----------~g~~~l~~~--g~~~~~---~~~------------- 283 (582)
T 3o4h_A 238 KD-----FSSYRPTAITWLGYLPDGRLAVVARR-----------EGRSAVFID--GERVEA---PQG------------- 283 (582)
T ss_dssp SH-----HHHHCCSEEEEEEECTTSCEEEEEEE-----------TTEEEEEET--TEEECC---CSS-------------
T ss_pred cC-----hhhhhhccccceeEcCCCcEEEEEEc-----------CCcEEEEEE--CCeecc---CCC-------------
Confidence 76 56677 9999999999987 999999999 888762 222
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc---EEecc
Q 012410 416 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL---VHVWS 463 (464)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt---VrlWd 463 (464)
.|.+++|| ||+.+++++.+.+ |.+||
T Consensus 284 ---------------------~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 284 ---------------------NHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp ---------------------EEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ---------------------ceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 68899999 9999999998866 66665
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=4.9e-27 Score=250.95 Aligned_cols=297 Identities=10% Similarity=0.020 Sum_probs=209.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCc---eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~---~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
|+++++ +.+|.+++||+.+|+....+.. |.. .|.+++|||||+.|++++...... ..-...++.||++.+|++.
T Consensus 28 g~~~~~-~~dg~i~~~d~~~g~~~~~~~~-~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~ 104 (723)
T 1xfd_A 28 TEFIYR-EQKGTVRLWNVETNTSTVLIEG-KKIESLRAIRYEISPDREYALFSYNVEPIY-QHSYTGYYVLSKIPHGDPQ 104 (723)
T ss_dssp SCBCCC-CSSSCEEEBCGGGCCCEEEECT-TTTTTTTCSEEEECTTSSEEEEEESCCCCS-SSCCCSEEEEEESSSCCCE
T ss_pred CcEEEE-eCCCCEEEEECCCCcEEEEecc-ccccccccceEEECCCCCEEEEEecCccce-eecceeeEEEEECCCCceE
Confidence 777766 7899999999999998888744 443 389999999999999966332110 0001158899999999861
Q ss_pred Ccccceeec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCE------------------eEEE
Q 012410 175 SGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHV------------------QEIK 233 (464)
Q Consensus 175 ~~~~l~~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V------------------~~Va 233 (464)
++.... +...+..++|| |||+.||+++. ++|++||+.+|++...... ..+ .+++
T Consensus 105 ---~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~ 179 (723)
T 1xfd_A 105 ---SLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW 179 (723)
T ss_dssp ---ECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred ---eccCCccccccccccEEC-CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence 111111 11224579998 99999999886 7999999999988765442 222 7899
Q ss_pred EeCCC------------------------------------------ceeEEEEEcCCCcEEEEEeeC------Ccceee
Q 012410 234 IRSSS------------------------------------------HVPLKILSIEDGTVLKVFYHL------LHRNKK 265 (464)
Q Consensus 234 fs~s~------------------------------------------d~tIklWdi~tG~~l~tl~~~------~~~~~~ 265 (464)
|||++ +.+|++||+++|++...+..+ ...+..
T Consensus 180 ~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (723)
T 1xfd_A 180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM 259 (723)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred ECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEE
Confidence 98851 127999999999987777632 356789
Q ss_pred EEEEccCCCeEE-EEe----CCCeEEEEECCCCcEEEEccc-CCCceE----EEEEcCCCcEEEE--Ee-CC------eE
Q 012410 266 VDFIEQFNEKLL-VKQ----ENENLQILDVRNAELMEVSRT-EFMTPS----AFIFLYENQLFLT--FR-NR------TV 326 (464)
Q Consensus 266 V~F~~~~~~~ll-a~s----~D~tIkIWDv~tg~~l~~l~g-h~~~v~----sv~FspdgqllaS--~s-D~------TI 326 (464)
++|+|+ ++++ +.+ .+.+|++||+.+|++..++.. |..++. +++|||||+.|+. +. |+ .|
T Consensus 260 ~~~SpD--g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l 337 (723)
T 1xfd_A 260 VKWATS--TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (723)
T ss_dssp EEESSS--SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred EEEeCC--CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEE
Confidence 999995 4555 443 346899999999999887654 334433 7899999997775 34 77 57
Q ss_pred EEEe-CCCce---EEEeccCCCCcCCCCee-EEEECCCCCEEEEEecCCCccccccCCC--CeEEEEeCCCC--eEEEEE
Q 012410 327 AVWN-FRGEL---VTSFEDHLLWHPDCNTN-NIYITSDQDLIISYCKAEPEDQWMEGSA--GSINVSSILTG--KCLAKI 397 (464)
Q Consensus 327 klWd-~~Ge~---l~tl~gH~~~~~~~~v~-svafSpDg~~LaSgs~~~~~~~~~~s~D--gtIklWdi~tG--~cl~tl 397 (464)
.+|| .++.. +..|..+... +. .++|||||+.|+..+. .+ ++++||++..+ .+...|
T Consensus 338 ~~~d~~~~~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~----------~~~~~~~~l~~~~~~~~~~~~~l 402 (723)
T 1xfd_A 338 TVSSSQPNSSNDNIQSITSGDWD-----VTKILAYDEKGNKIYFLST----------EDLPRRRQLYSANTVGNFNRQCL 402 (723)
T ss_dssp EEECSSCCSSSCCCCBSCCSSSC-----EEEEEEEETTTTEEEEEES----------SSCTTCCEEEEECSSTTCCCBCS
T ss_pred EEEeccCCCCccceeEeecCCeE-----EEeeeEEcCCCCEEEEEEc----------CCCCcceEEEEEeCCCCCCccee
Confidence 7788 45433 6667643222 33 4799999999987654 13 88999998643 234444
Q ss_pred cc---CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEe
Q 012410 398 NA---TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 453 (464)
Q Consensus 398 ~g---h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg 453 (464)
.+ |.. .|.+++|||||+.|+..
T Consensus 403 ~~~~~~~~----------------------------------~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 403 SCDLVENC----------------------------------TYFSASFSHSMDFFLLK 427 (723)
T ss_dssp STTSSSSC----------------------------------CCCEEEECTTSSEEEEE
T ss_pred cccccCCC----------------------------------CeEEEEECCCCCEEEEE
Confidence 33 332 67889999999988754
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=2.9e-25 Score=212.23 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=184.1
Q ss_pred ceeehh-ccCCeEEeeecc-cc--cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCC
Q 012410 99 DIVFAL-AHSGVCAAFSRE-TN--RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGK 172 (464)
Q Consensus 99 ~~l~~l-~~~g~~~~~~~~-~g--~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~ 172 (464)
++|++. ..++.+++|++. +| +.+..+ .+...+.+++|+|+|+.|++++ . ++ ..+.+|++. +|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~--~-~~------~~v~~~~~~~~~~~ 73 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGV--R-PE------FRVLAYRIAPDDGA 73 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEE--T-TT------TEEEEEEECTTTCC
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEee--c-CC------CeEEEEEecCCCCc
Confidence 344444 679999999974 45 334444 3556689999999999988855 2 33 589999997 666
Q ss_pred CCCcccceeeccccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCc
Q 012410 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGT 251 (464)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~ 251 (464)
... +........|..++|+ |||+.|+.++ .|++|++||+.+|.. ++
T Consensus 74 ~~~---~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~-----------------------------~~ 120 (343)
T 1ri6_A 74 LTF---AAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLP-----------------------------VG 120 (343)
T ss_dssp EEE---EEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEE-----------------------------EE
T ss_pred eee---ccccccCCCCcEEEEc-CCCCEEEEEecCCCeEEEEECCCCcc-----------------------------cc
Confidence 421 1111112356689997 8999776554 588899999743321 11
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCC-CcEEEE----cc-cCCCceEEEEEcCCCcEE-EEEe-
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEV----SR-TEFMTPSAFIFLYENQLF-LTFR- 322 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t-g~~l~~----l~-gh~~~v~sv~Fspdgqll-aS~s- 322 (464)
.+.++... ..+..++|+|+ +..+++++ .|++|++||+.+ ++.... +. .....+..++|+|||+.| +++.
T Consensus 121 ~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 121 VVDVVEGL-DGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp EEEEECCC-TTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ccccccCC-CCceEEEECCC-CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 12222221 34577888883 56677776 899999999998 766432 22 233578899999999965 4555
Q ss_pred CCeEEEEeCC---Cce--EEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC----
Q 012410 323 NRTVAVWNFR---GEL--VTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL---- 389 (464)
Q Consensus 323 D~TIklWd~~---Ge~--l~tl~----gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~---- 389 (464)
+++|++||++ |++ +..+. +|... ..+..++|+|||++|+.++. .|++|++||+.
T Consensus 199 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~i~~s~dg~~l~v~~~----------~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 199 NSSVDVWELKDPHGNIECVQTLDMMPENFSDT---RWAADIHITPDGRHLYACDR----------TASLITVFSVSEDGS 265 (343)
T ss_dssp TTEEEEEESSCTTSCCEEEEEEECSCTTCCSC---CCEEEEEECTTSSEEEEEET----------TTTEEEEEEECTTSC
T ss_pred CCEEEEEEecCCCCcEEEEeeccccCcccccc---CCccceEECCCCCEEEEEec----------CCCEEEEEEEcCCCC
Confidence 9999999982 544 33332 22111 12568999999998875442 28999999998
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd 463 (464)
+.+.+..+..+. .+.+++|+|||+.|+.++ .|+.|++|+
T Consensus 266 ~~~~~~~~~~~~-----------------------------------~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 266 VLSKEGFQPTET-----------------------------------QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp CEEEEEEEECSS-----------------------------------SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred ceEEeeeecCCC-----------------------------------ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 345666665543 466799999999988888 689999994
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=8.7e-26 Score=255.22 Aligned_cols=310 Identities=12% Similarity=0.056 Sum_probs=215.6
Q ss_pred EEEEeccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccC
Q 012410 92 IEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (464)
Q Consensus 92 ~~~~~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G 171 (464)
....++++.|+..+. +.+.+|++.+|+ ...+. .|...+.+++|||||+.||.+|.....+ ...++.+|++.+|
T Consensus 18 ~~~~~S~~~iaf~~~-~~l~~~~~~gg~-~~~lt-~~~~~v~~~~~SPDG~~la~~s~~~~~~----~~~~i~~~d~~~g 90 (1045)
T 1k32_A 18 LNPDIHGDRIIFVCC-DDLWEHDLKSGS-TRKIV-SNLGVINNARFFPDGRKIAIRVMRGSSL----NTADLYFYNGENG 90 (1045)
T ss_dssp EEEEEETTEEEEEET-TEEEEEETTTCC-EEEEE-CSSSEEEEEEECTTSSEEEEEEEESTTC----CEEEEEEEETTTT
T ss_pred eCcEEeCCEEEEEEC-CcEEEEECCCCc-EEEee-eCCCcccCeEECCCCCEEEEEEeeccCC----CCCeEEEEECCCC
Confidence 334444666666554 689999976665 45563 4788899999999999999977542111 1158999998887
Q ss_pred CCCCcccceeecc---ccCceEEEEeCCCCcEEEEecCC------CcEEEEeCCCCeEEEEec-----------------
Q 012410 172 KPDSGFALFESES---LKWPGFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTMLYSIS----------------- 225 (464)
Q Consensus 172 ~~~~~~~l~~~~~---~~~~~~VaFs~pdGk~LaSgs~D------~tiKlWdl~tg~~l~tl~----------------- 225 (464)
+.. .+..+.... ..++..++|| |||++|++++.| ..+.+||+.+|++.....
T Consensus 91 ~~~-~lt~~~~~~~~~~~~~~~~~~S-pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~ 168 (1045)
T 1k32_A 91 EIK-RITYFSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGR 168 (1045)
T ss_dssp EEE-ECCCCCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEE
T ss_pred CeE-EcccCCCcccccccccccccCC-CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEec
Confidence 742 122222111 0112589998 899988888755 357778887766431000
Q ss_pred ----------------------------------CCCEeEEEEeC-------CCceeEEEEEcCC-CcEEE---------
Q 012410 226 ----------------------------------DKHVQEIKIRS-------SSHVPLKILSIED-GTVLK--------- 254 (464)
Q Consensus 226 ----------------------------------~~~V~~Vafs~-------s~d~tIklWdi~t-G~~l~--------- 254 (464)
...|..++|++ +.|++++||.+.. |..++
T Consensus 169 ~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~ 248 (1045)
T 1k32_A 169 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY 248 (1045)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC
T ss_pred cCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcc
Confidence 11223333333 2344555555431 22122
Q ss_pred ------------------------------EEee-----------CCcceeeEEEE-ccCCCeEEEEeCCCeEEEEECCC
Q 012410 255 ------------------------------VFYH-----------LLHRNKKVDFI-EQFNEKLLVKQENENLQILDVRN 292 (464)
Q Consensus 255 ------------------------------tl~~-----------~~~~~~~V~F~-~~~~~~lla~s~D~tIkIWDv~t 292 (464)
.+.. +...+..++|+ |+ +..+++++ +++|.+||+.+
T Consensus 249 ~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 249 PRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp EEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTS
T ss_pred eeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCC
Confidence 2221 11146788898 74 45566555 88999999998
Q ss_pred CcEEEEcccCCC-ceEEEEEcCCCcEEEEEe-CCeEE-EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 012410 293 AELMEVSRTEFM-TPSAFIFLYENQLFLTFR-NRTVA-VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 369 (464)
Q Consensus 293 g~~l~~l~gh~~-~v~sv~FspdgqllaS~s-D~TIk-lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~ 369 (464)
++... +..|.. .+..++|+ ||+.|++++ +..|. +||+.+..+..+.+|... +..++|||||++||+++.
T Consensus 327 ~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~-----~~~~~~SpDG~~la~~~~- 398 (1045)
T 1k32_A 327 TYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN-----VFAMGVDRNGKFAVVAND- 398 (1045)
T ss_dssp SBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS-----EEEEEECTTSSEEEEEET-
T ss_pred CceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccc-----eeeeEECCCCCEEEEECC-
Confidence 88665 556666 89999999 999999999 77888 889964445566688766 889999999999999886
Q ss_pred CCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE
Q 012410 370 EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 449 (464)
Q Consensus 370 ~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~ 449 (464)
|++|++||+.+|++...+.+|.. .|.+++|||||+.
T Consensus 399 ----------~~~v~~~d~~tg~~~~~~~~~~~----------------------------------~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 399 ----------RFEIMTVDLETGKPTVIERSREA----------------------------------MITDFTISDNSRF 434 (1045)
T ss_dssp ----------TSEEEEEETTTCCEEEEEECSSS----------------------------------CCCCEEECTTSCE
T ss_pred ----------CCeEEEEECCCCceEEeccCCCC----------------------------------CccceEECCCCCe
Confidence 89999999999999998888876 7888999999999
Q ss_pred EEEeeCCC----------cEEeccC
Q 012410 450 IYTGNRHG----------LVHVWSN 464 (464)
Q Consensus 450 LaSgs~Dg----------tVrlWd~ 464 (464)
||+++.++ +|++||.
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEET
T ss_pred EEEEecCccccccCCCCCeEEEEEC
Confidence 99988765 9999983
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=2.3e-25 Score=212.31 Aligned_cols=242 Identities=9% Similarity=0.068 Sum_probs=188.1
Q ss_pred eeEEEEEeccCCCCCcccceeecccc-CceEEEEeCCCCcEE-EEecCCCcEEEEeCCCCeEEEEec-CC------CEeE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLK-WPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DK------HVQE 231 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~-~~~~VaFs~pdGk~L-aSgs~D~tiKlWdl~tg~~l~tl~-~~------~V~~ 231 (464)
.++.+||+.+|+....+. ..... .|..++|+ |||+.| ++++.+++|.+||+.+++.+.++. .. .+..
T Consensus 11 ~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVIT---IADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp TEEEEEETTTTEEEEEEE---CTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred CeEEEEECCCCcEEEEEE---cCCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence 689999999888643222 11101 46789997 899754 667778999999999999987766 22 6778
Q ss_pred EEEeCC--------------------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 232 IKIRSS--------------------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 232 Vafs~s--------------------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
++|+|+ .+..|.+||+++|+++..+... .....++|+|+ +.+++++ ++.|.+||+.
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~ 162 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARD-GSKLYGL--GRDLHVMDPE 162 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTT-SSCEEEE--SSSEEEEETT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CCcceeEECCC-CCEEEEe--CCeEEEEECC
Confidence 899874 2588999999999999888742 55688999984 5556666 6899999999
Q ss_pred CCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CC-----------------------eEEEEeC-CCceE-EEeccCCC
Q 012410 292 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR-----------------------TVAVWNF-RGELV-TSFEDHLL 344 (464)
Q Consensus 292 tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~-----------------------TIklWd~-~Ge~l-~tl~gH~~ 344 (464)
+++++..+..+.. ...++|+|||+.++..+ ++ +|.+||. +|++. ..+..|..
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 241 (337)
T 1pby_B 163 AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC
Confidence 9999887765431 11337899999765544 44 4689999 68875 34555554
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 424 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
. +.+++|+|||++|+.+ +++|.+||+.+++.++.+..+.
T Consensus 242 ~-----~~~~~~s~dg~~l~~~-------------~~~v~~~d~~~~~~~~~~~~~~----------------------- 280 (337)
T 1pby_B 242 F-----YFSTAVNPAKTRAFGA-------------YNVLESFDLEKNASIKRVPLPH----------------------- 280 (337)
T ss_dssp C-----EEEEEECTTSSEEEEE-------------ESEEEEEETTTTEEEEEEECSS-----------------------
T ss_pred c-----eeeEEECCCCCEEEEe-------------CCeEEEEECCCCcCcceecCCC-----------------------
Confidence 4 7789999999999886 5899999999999999887543
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 425 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 425 ~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+++++|+|||+.|++++.|+.|++||.
T Consensus 281 ------------~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 281 ------------SYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp ------------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ------------ceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 5678999999999999999999999983
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.1e-25 Score=254.28 Aligned_cols=290 Identities=11% Similarity=0.021 Sum_probs=219.4
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc-CCCCCcccceeeccccC
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKW 187 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~-G~~~~~~~l~~~~~~~~ 187 (464)
..++|....+..+..+ ..|...+.++.|+++ .++.++ ..+ .++.||.+.. |.....+..+ ..
T Consensus 184 ~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d--~l~~~~---~~d------g~~~l~~~~~~g~~~~~l~~~-----~~ 246 (1045)
T 1k32_A 184 RGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH--RIYFIT---DID------GFGQIYSTDLDGKDLRKHTSF-----TD 246 (1045)
T ss_dssp CCEEEEEEETTEEEEE-ECCSSCCEEEEEETT--EEEEEE---CTT------SSCEEEEEETTSCSCEECCCC-----CS
T ss_pred cCCEEEECCCCCeEEC-cCCCCcccceEEeCC--EEEEEE---ecc------CceEEEEEeCCCCcceEecCC-----CC
Confidence 5566654444556666 568888999999987 444433 334 5788998753 4322111111 11
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC-------------CEeEEEEe-CC-------CceeEEEEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------------HVQEIKIR-SS-------SHVPLKILS 246 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~-------------~V~~Vafs-~s-------~d~tIklWd 246 (464)
...++|| |||+.||++ .|++|.+||+++. .+..+... .|.+++|| |+ .+..|.+|+
T Consensus 247 ~~~~~~S-pDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~ 323 (1045)
T 1k32_A 247 YYPRHLN-TDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQD 323 (1045)
T ss_dssp SCEEEEE-ESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEEC
T ss_pred cceeeEc-CCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEc
Confidence 2367998 899999988 4899999999554 44466542 58999999 86 356899999
Q ss_pred cCCCcEEEEEeeCCc-ceeeEEEEccCCCeEEEEeCCCeEE-EEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C
Q 012410 247 IEDGTVLKVFYHLLH-RNKKVDFIEQFNEKLLVKQENENLQ-ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 323 (464)
Q Consensus 247 i~tG~~l~tl~~~~~-~~~~V~F~~~~~~~lla~s~D~tIk-IWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D 323 (464)
+.+|+... +..+.. .+..++|+ ++..++..+.+..|. +||+.++++.... +|...+.+++|||||+.||+++ |
T Consensus 324 ~~~~~~~~-~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 324 VSGTYVLK-VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp TTSSBEEE-CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCCCceEE-ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCC
Confidence 99888655 443334 77889998 466777788888898 9999998876655 8888999999999999999999 9
Q ss_pred CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 324 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 324 ~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
++|++||+ +|++...+.+|... +.+++|||||++||+++... +-......+++|++||+.+|+ +..+.+|..
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~-----v~~~~~SpDG~~la~~~~~~-~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~ 472 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAM-----ITDFTISDNSRFIAYGFPLK-HGETDGYVMQAIHVYDMEGRK-IFAATTENS 472 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSC-----CCCEEECTTSCEEEEEEEEC-SSTTCSCCEEEEEEEETTTTE-EEECSCSSS
T ss_pred CeEEEEECCCCceEEeccCCCCC-----ccceEECCCCCeEEEEecCc-cccccCCCCCeEEEEECCCCc-EEEeeCCCc
Confidence 99999999 69999888899887 77899999999999887510 000001124699999999998 778888865
Q ss_pred CCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 403 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+.+++|+|||+.|++++.++.+++|+
T Consensus 473 ----------------------------------~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 473 ----------------------------------HDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp ----------------------------------BEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred ----------------------------------ccCCceEcCCCCEEEEEecccCCcCcc
Confidence 788999999999999999999988886
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=4.5e-26 Score=239.55 Aligned_cols=219 Identities=11% Similarity=0.067 Sum_probs=166.3
Q ss_pred ceEEEEeCCCCcEEEEecC-CCcEEEEeCCCCeEEEEec-C-CCEeEEEEeCC----------CceeEEEEEcC---CCc
Q 012410 188 PGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSIS-D-KHVQEIKIRSS----------SHVPLKILSIE---DGT 251 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~-~-~~V~~Vafs~s----------~d~tIklWdi~---tG~ 251 (464)
+.+|+|+ |||+.||+++. |++++||++.+|++..... . ..|..++|||+ .+...+||.+. +|+
T Consensus 24 ~~~~~~~-~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~ 102 (582)
T 3o4h_A 24 KYSLQGV-VDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE 102 (582)
T ss_dssp EEEEEEE-ETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred hheeecC-CCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCc
Confidence 4489998 89999999988 9999999998887755333 2 46888888874 23445665443 243
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C----CeE
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N----RTV 326 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D----~TI 326 (464)
.. .+... +.....+|+|+.++.+++++.++.+.|||+.+|++.+...++. .+++|||||+.||+++ | ++|
T Consensus 103 ~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i 177 (582)
T 3o4h_A 103 EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSL 177 (582)
T ss_dssp CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEE
T ss_pred cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEE
Confidence 33 33321 2334568888533455565544455599999999887766554 7899999999999887 7 799
Q ss_pred EEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC--eEEEEeCCCCeEEEEEccCCCC
Q 012410 327 AVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG--SINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 327 klWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg--tIklWdi~tG~cl~tl~gh~~~ 403 (464)
.+||+ +|++ +.|.+|... +++++|||||++|+++.. |+ +|++||+.+|++. .+.+|..
T Consensus 178 ~~~d~~~g~~-~~l~~~~~~-----~~~~~~SpDG~~l~~~~~-----------~~~~~i~~~d~~~~~~~-~~~~~~~- 238 (582)
T 3o4h_A 178 FTSNLSSGGL-RVFDSGEGS-----FSSASISPGMKVTAGLET-----------AREARLVTVDPRDGSVE-DLELPSK- 238 (582)
T ss_dssp EEEETTTCCC-EEECCSSCE-----EEEEEECTTSCEEEEEEC-----------SSCEEEEEECTTTCCEE-ECCCSCS-
T ss_pred EEEcCCCCCc-eEeecCCCc-----cccceECCCCCEEEEccC-----------CCeeEEEEEcCCCCcEE-EccCCCc-
Confidence 99999 4665 578899877 789999999999996554 77 9999999999998 7877764
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEE--------EEcCCCCEEEEeeCCCcEEeccC
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL--------FYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl--------afspDg~~LaSgs~DgtVrlWd~ 464 (464)
.|.++ .|||||+.+++++.|++++||+.
T Consensus 239 ---------------------------------~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 239 ---------------------------------DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ---------------------------------HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ---------------------------------ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 33334 49999999999999999999973
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=3.6e-24 Score=206.41 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=184.5
Q ss_pred cCceEEEEeCCCCcEEEEecC-------CCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcC
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQ-------DSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIE 248 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~-------D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~ 248 (464)
..|..++|+ |||+.|..++. +++|.+||+++++.+.++. ...+..++|+|+ .+..|.+||++
T Consensus 41 ~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYS-QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEE-TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEEC-CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 445589998 89988877764 5689999999999988876 456788899874 45789999999
Q ss_pred CCcEEEEEeeCCc---------ceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcE
Q 012410 249 DGTVLKVFYHLLH---------RNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 317 (464)
Q Consensus 249 tG~~l~tl~~~~~---------~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgql 317 (464)
+|+++.++..... ....++|+|+ ++++++++ .|++|.+||+.+++.+..+..+...+..++|+|||+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDA-TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCC-CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 9999999874211 1578999994 66677754 5899999999999999988866667889999999999
Q ss_pred EEEEe-CCeEEEEeC-CCceEEEecc----CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 318 FLTFR-NRTVAVWNF-RGELVTSFED----HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 318 laS~s-D~TIklWd~-~Ge~l~tl~g----H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
|+.++ |+.|.+||. +|+.+.++.. +... +..++|+|||++|+.++. .+++|.+||+.+|
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~----------~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHF-----FINISLDTARQRAFITDS----------KAAEVLVVDTRNG 263 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC-----EEEEEEETTTTEEEEEES----------SSSEEEEEETTTC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc-----cceEEECCCCCEEEEEeC----------CCCEEEEEECCCC
Confidence 99988 999999999 6999988775 3333 678999999998877664 2699999999999
Q ss_pred eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEeccC
Q 012410 392 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 392 ~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd~ 464 (464)
++++.+..... ..++|+|||+.|+.++ .+++|.+||.
T Consensus 264 ~~~~~~~~~~~------------------------------------~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 264 NILAKVAAPES------------------------------------LAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CEEEEEECSSC------------------------------------CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEcCCC------------------------------------ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 99998875431 3589999999766555 7999999983
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=5.6e-24 Score=207.37 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=177.9
Q ss_pred CCeEEeee--cccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-ec
Q 012410 107 SGVCAAFS--RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SE 183 (464)
Q Consensus 107 ~g~~~~~~--~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~ 183 (464)
++.+.+|. ..+|+....-...+......++|+|||+ |++++.. ..+ .++.+|++.+|+... +.. ..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~-~~~------~~v~~~~~~~g~~~~---~~~~~~ 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE-DDE------GGIAAWQIDGQTAHK---LNTVVA 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE-TTE------EEEEEEEEETTEEEE---EEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec-CCC------ceEEEEEecCCcEEE---eeeeec
Confidence 44455554 3456654321122344567899999999 6665532 234 689999998776421 111 11
Q ss_pred cccCceEEEEeCCCCcEEEEec-CCCcEEEEeCC-CCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCc
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLK-NYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~-tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
....|..|+|+ |||++|++++ .|++|++||+. +|+... + ..+.... ..+. ......
T Consensus 84 ~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~~~-~-----~~~~~~~--~~p~-------------~~~~~~ 141 (347)
T 3hfq_A 84 PGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGALTL-T-----DTVQHSG--HGPR-------------PEQDGS 141 (347)
T ss_dssp ESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCEEE-E-----EEEECCC--CCSS-------------TTCSSC
T ss_pred CCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCeee-c-----ceeecCC--CCCC-------------ccccCC
Confidence 23567799998 8999888877 78999999985 343211 0 0010000 0000 000113
Q ss_pred ceeeEEEEccCCCeEEEE-eCCCeEEEEECC-CCcEEEE--ccc-CCCceEEEEEcCCCcEEEE-Ee-CCeEEEEeCC--
Q 012410 262 RNKKVDFIEQFNEKLLVK-QENENLQILDVR-NAELMEV--SRT-EFMTPSAFIFLYENQLFLT-FR-NRTVAVWNFR-- 332 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~-tg~~l~~--l~g-h~~~v~sv~FspdgqllaS-~s-D~TIklWd~~-- 332 (464)
.+..++|+|+ +. ++++ ..+++|++||+. +|++... +.. ....+..++|+|||+.|+. .. +++|++|+++
T Consensus 142 ~~~~~~~spd-g~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 142 HIHYTDLTPD-NR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp CEEEEEECTT-SC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CceEEEECCC-Cc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 4677899884 44 6665 478999999999 6765432 222 2246889999999995554 55 8999999983
Q ss_pred -Cce--EEEeccCCCC-cCCCCeeEEEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCC-CC--eEEEEEccCCCCC
Q 012410 333 -GEL--VTSFEDHLLW-HPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSIL-TG--KCLAKINATNCSP 404 (464)
Q Consensus 333 -Ge~--l~tl~gH~~~-~~~~~v~svafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~-tG--~cl~tl~gh~~~~ 404 (464)
|++ +..+..+..- .....+..++|||||++|+ +... +++|.+||+. +| +.+.++..|..
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-----------~~~v~v~~~~~~g~~~~~~~~~~~~~-- 286 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-----------YNTLAVFAVTADGHLTLIQQISTEGD-- 286 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-----------TTEEEEEEECGGGCEEEEEEEECSSS--
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-----------CCEEEEEEECCCCcEEEeEEEecCCC--
Confidence 554 3344333210 0001267899999999884 4443 8999999997 33 66777766654
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC-CcEEecc
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVHVWS 463 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D-gtVrlWd 463 (464)
.+.+++|||||+.||+++.+ ++|.+|+
T Consensus 287 --------------------------------~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 287 --------------------------------FPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp --------------------------------CCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --------------------------------CcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 57789999999999988865 9999993
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=2.3e-24 Score=230.48 Aligned_cols=257 Identities=11% Similarity=0.120 Sum_probs=184.4
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC-Ccccceeeccc---------------cCceEEEEeCC
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-SGFALFESESL---------------KWPGFVEFDDV 196 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~-~~~~l~~~~~~---------------~~~~~VaFs~p 196 (464)
..+.|. |+.+++. +.+ . | +||+.+|+.. . .++..... ..+.+++|| |
T Consensus 29 ~~~~w~--g~~~~~~----~~~------~-i-~~d~~tg~~~~~--~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s-p 91 (706)
T 2z3z_A 29 VGLQWM--GDNYVFI----EGD------D-L-VFNKANGKSAQT--TRFSAADLNALMPEGCKFQTTDAFPSFRTLDA-G 91 (706)
T ss_dssp TTCEEE--TTEEEEE----ETT------E-E-EEEC-------C--EEEEHHHHHTTC-----------CCCEEEEET-T
T ss_pred CCCcCc--CCeEEEE----eCC------c-E-EEECCCCcEeeE--EeechhHhhhhccchhccccccccCceeEEEC-C
Confidence 334555 6666663 334 3 7 9999999862 2 22221111 235689997 8
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------CceeEEEEEcCC-----CcEEEEEeeCCcc-
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------SHVPLKILSIED-----GTVLKVFYHLLHR- 262 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------~d~tIklWdi~t-----G~~l~tl~~~~~~- 262 (464)
|+ .|+.+ .|++|++||+.++++..... ...+.+++|||+ .+..|++||+.+ |+..+........
T Consensus 92 d~-~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 92 RG-LVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp TT-EEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred CC-eEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 95 55544 45999999999998876544 467888999996 457899999999 9887655432121
Q ss_pred -------------eeeEEEEccCCCeEEEEe---------------------------------CCCeEEEEECCCCcEE
Q 012410 263 -------------NKKVDFIEQFNEKLLVKQ---------------------------------ENENLQILDVRNAELM 296 (464)
Q Consensus 263 -------------~~~V~F~~~~~~~lla~s---------------------------------~D~tIkIWDv~tg~~l 296 (464)
+..++|+| ++.+|++++ .+.+|.+||+.++++.
T Consensus 170 ~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred EcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 48999999 466777776 4478999999999987
Q ss_pred EEcc--cCCCceEEEEEcCCCcEEEEEe-CC-----eEEEEeC-CCceEEEec--cCCCCcCCCCeeEEEECC--CCCEE
Q 012410 297 EVSR--TEFMTPSAFIFLYENQLFLTFR-NR-----TVAVWNF-RGELVTSFE--DHLLWHPDCNTNNIYITS--DQDLI 363 (464)
Q Consensus 297 ~~l~--gh~~~v~sv~FspdgqllaS~s-D~-----TIklWd~-~Ge~l~tl~--gH~~~~~~~~v~svafSp--Dg~~L 363 (464)
.... .|...+.+++|||||+.|++++ |+ +|.+||+ +|+.++.+. .+..|+. .+.+++||| ||++|
T Consensus 249 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~--~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE--PLHPLTFLPGSNNQFI 326 (706)
T ss_dssp ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC--CCSCCEECTTCSSEEE
T ss_pred eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC--ccCCceeecCCCCEEE
Confidence 7653 4667899999999999999988 86 9999999 684554443 3444421 136789999 99999
Q ss_pred EEEecCCCccccccCCCCeEEEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEE-E
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS-L 441 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s-l 441 (464)
++++. |++++||++. +|+++..|.+|.. .|.+ +
T Consensus 327 ~~~~~-----------~g~~~l~~~~~~~~~~~~l~~~~~----------------------------------~v~~~~ 361 (706)
T 2z3z_A 327 WQSRR-----------DGWNHLYLYDTTGRLIRQVTKGEW----------------------------------EVTNFA 361 (706)
T ss_dssp EEECT-----------TSSCEEEEEETTSCEEEECCCSSS----------------------------------CEEEEE
T ss_pred EEEcc-----------CCccEEEEEECCCCEEEecCCCCe----------------------------------EEEeee
Confidence 98875 8999999886 8899999987764 6776 8
Q ss_pred EEcCCCCEEEEeeCC
Q 012410 442 FYDEERNEIYTGNRH 456 (464)
Q Consensus 442 afspDg~~LaSgs~D 456 (464)
+|||||+.|+.++.+
T Consensus 362 ~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 362 GFDPKGTRLYFESTE 376 (706)
T ss_dssp EECTTSSEEEEEESS
T ss_pred EEcCCCCEEEEEecC
Confidence 999999988765544
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=8.3e-26 Score=242.61 Aligned_cols=265 Identities=9% Similarity=0.132 Sum_probs=194.1
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccc--cCceEEEEeCCCCcEEEEecC----
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL--KWPGFVEFDDVNGKVLTYSAQ---- 206 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~--~~~~~VaFs~pdGk~LaSgs~---- 206 (464)
.++.|+|||+++++ +. + .++++|++.+|++.. ++..... ..+.+++|| |||+.||+++.
T Consensus 19 ~~~~~s~dg~~~~~----~~-d------~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQ----SA-D------NNIVLYNIETGQSYT---ILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEE----CT-T------SCEEEEESSSCCEEE---EECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEE----cC-C------CCEEEEEcCCCcEEE---EEccccccccceeeEEEC-CCCCeEEEEecCcee
Confidence 47899999965554 23 4 599999999998642 2221100 124589998 99999999887
Q ss_pred -----CCcEEEEeCCCCeEE--EEecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe-eCCc----------
Q 012410 207 -----DSIYKVFDLKNYTML--YSISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY-HLLH---------- 261 (464)
Q Consensus 207 -----D~tiKlWdl~tg~~l--~tl~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~-~~~~---------- 261 (464)
|++|+|||+++|+++ ..+ ...+..++|||+ .+.+|++||+.+|++.+... ++..
T Consensus 84 ~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWV 162 (719)
T ss_dssp SSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHH
T ss_pred EEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccce
Confidence 799999999999884 223 356899999996 45799999999998865432 2111
Q ss_pred -------ceeeEEEEccCCCeEEEEeCCC----------------------------------eEEEEECCCCcEE---E
Q 012410 262 -------RNKKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVRNAELM---E 297 (464)
Q Consensus 262 -------~~~~V~F~~~~~~~lla~s~D~----------------------------------tIkIWDv~tg~~l---~ 297 (464)
....++|+| ++.+|+.++.|. +|++||+.+++++ +
T Consensus 163 ~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 163 YEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 114899999 466777776542 8999999999863 3
Q ss_pred E-----cccCCCceEEEEEcCCCcEEEEEe-C----CeEEEEe----C-CCceEEEe----ccCCCCcCCCCee-----E
Q 012410 298 V-----SRTEFMTPSAFIFLYENQLFLTFR-N----RTVAVWN----F-RGELVTSF----EDHLLWHPDCNTN-----N 353 (464)
Q Consensus 298 ~-----l~gh~~~v~sv~FspdgqllaS~s-D----~TIklWd----~-~Ge~l~tl----~gH~~~~~~~~v~-----s 353 (464)
. +.+|...+.+++|||||+++++.. . ..|.+|| . +|++...+ ++|..| +. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~ 316 (719)
T 1z68_A 242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW-----AGGFFVST 316 (719)
T ss_dssp CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC-----SSSSSCCC
T ss_pred ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce-----EccccCCc
Confidence 2 456888899999999999888854 2 2488899 8 58887777 588888 44 7
Q ss_pred EEECCCCCEEEEE-ecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 354 IYITSDQDLIISY-CKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 354 vafSpDg~~LaSg-s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
++|||||+.|+.. +. .+....|.+||+.+|+ ...|..+..
T Consensus 317 ~~~spdg~~l~~~~~~--------~~g~~~l~~~~~~~~~-~~~lt~~~~------------------------------ 357 (719)
T 1z68_A 317 PVFSYDAISYYKIFSD--------KDGYKHIHYIKDTVEN-AIQITSGKW------------------------------ 357 (719)
T ss_dssp CEECTTSSCEEEEEEC--------TTSCEEEEEESSCSTT-CEECSCSSS------------------------------
T ss_pred cEECCCCCeEEEEEEc--------cCCceEEEEEECCCCc-eEecccCce------------------------------
Confidence 8999999976552 22 1124578888988877 556655543
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCC-----CcEEecc
Q 012410 433 EALEDITSLFYDEERNEIYTGNRH-----GLVHVWS 463 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~D-----gtVrlWd 463 (464)
.|..+.++ ||+.|+..+.+ ++++||.
T Consensus 358 ----~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 358 ----EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ----CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ----EEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 67888888 88887766655 8899995
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=7.9e-24 Score=203.20 Aligned_cols=222 Identities=7% Similarity=0.004 Sum_probs=173.6
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CC--CEeEEEEeCC---------CceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK--HVQEIKIRSS---------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~--~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~ 257 (464)
.++|+ ++++++++++.|++|++||+++++.+.++. .. .+..++|+|+ .+..|.+||+++|+.+.++.
T Consensus 4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 46776 799999999999999999999999998876 33 5889999884 45789999999999998887
Q ss_pred eCC------cceeeEEEEccCCCeEEEEeCC------------CeEEEEECCCCcE---EEEcccCCCceEEEEEcCCCc
Q 012410 258 HLL------HRNKKVDFIEQFNEKLLVKQEN------------ENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYENQ 316 (464)
Q Consensus 258 ~~~------~~~~~V~F~~~~~~~lla~s~D------------~tIkIWDv~tg~~---l~~l~gh~~~v~sv~Fspdgq 316 (464)
... ..+..++|+| ++.++++++.| ++|.+||+.+++. +..+..+ ..+.+++|+|||+
T Consensus 83 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGS 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSC
T ss_pred cccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCc
Confidence 321 2268899998 46677777654 9999999999654 3344443 3688899999999
Q ss_pred EEEEEeCCeEEEEeC-CCceEEEeccCCCCcC------------------------------------------------
Q 012410 317 LFLTFRNRTVAVWNF-RGELVTSFEDHLLWHP------------------------------------------------ 347 (464)
Q Consensus 317 llaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~------------------------------------------------ 347 (464)
+++ ++ +.|.+||. +|+++.++..+....+
T Consensus 161 l~~-~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYV-AG-PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEE-ES-SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEE-cc-CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 555 44 34999999 6999988875430000
Q ss_pred ---------------CCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccC
Q 012410 348 ---------------DCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 411 (464)
Q Consensus 348 ---------------~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~ 411 (464)
...+.+++|+| ||++|+.+ +++|.+||+.+|+.++++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-------------~~~v~~~d~~~~~~~~~~~~~~---------- 295 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-------------LNRLAKYDLKQRKLIKAANLDH---------- 295 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-------------ESEEEEEETTTTEEEEEEECSS----------
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE-------------cCeEEEEECccCeEEEEEcCCC----------
Confidence 00145678889 99999876 5799999999999999886443
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 412 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
.+++++|+|||+.|++++.+++|++||.
T Consensus 296 -------------------------~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 296 -------------------------TYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp -------------------------CCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred -------------------------CccceEECCCCCEEEEecCCCeEEEEec
Confidence 4568999999999999999999999983
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.92 E-value=1.5e-23 Score=206.19 Aligned_cols=309 Identities=9% Similarity=0.028 Sum_probs=195.4
Q ss_pred eecccccEeeEeecCCCceEEE-----EEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccC
Q 012410 113 FSRETNRRICFLNVSPDEVIRS-----LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (464)
Q Consensus 113 ~~~~~g~~l~~ln~~~~~~i~S-----v~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~ 187 (464)
.+..+|..+..+.. +.....+ ++|||||+.|+.++.. ++ ...+.+|++.+|+......... ..
T Consensus 15 ~~~~~g~~~~~lt~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~g-----~~~l~~~d~~~g~~~~lt~~~~----~~ 82 (388)
T 3pe7_A 15 QDASTGAQVTRLTP-PDVTCHRNYFYQKCFTRDGSKLLFGGAF--DG-----PWNYYLLDLNTQVATQLTEGRG----DN 82 (388)
T ss_dssp ECTTTCCEEEECSC-TTSCEECCCTTSCCBCTTSCEEEEEECT--TS-----SCEEEEEETTTCEEEECCCSSC----BC
T ss_pred ecCCCCcceEEecC-CcccccchhhcCccCCCCCCEEEEEEcC--CC-----CceEEEEeCCCCceEEeeeCCC----CC
Confidence 45678888888854 4444566 8899999999996631 11 1357788888887642111111 11
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE--EecCCCEeEEEE--eCC--------------------------
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDKHVQEIKI--RSS-------------------------- 237 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~--tl~~~~V~~Vaf--s~s-------------------------- 237 (464)
...++|| |||+.|++++.|.++.+||+.+|+... .++...+....+ +|+
T Consensus 83 ~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 83 TFGGFLS-PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp SSSCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred ccceEEc-CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence 1256897 999999999999999999999998754 333444433333 332
Q ss_pred ----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeC------CCeEEEEECCCCcEEEEcccCC-Cce
Q 012410 238 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE------NENLQILDVRNAELMEVSRTEF-MTP 306 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~------D~tIkIWDv~tg~~l~~l~gh~-~~v 306 (464)
.+..|.+||+++|+......+. ..+..++|+|.++.+|+..+. +..|.++|+.+++......++. ..+
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLKTGESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC 240 (388)
T ss_dssp GGGCCCEEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred hccCCcceEEEEECCCCceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence 3467999999999876655543 567899999933455655553 3478888877666544444332 357
Q ss_pred EEEEEcCCCcEEEEEe--CC----eEEEEeC-CCc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 307 SAFIFLYENQLFLTFR--NR----TVAVWNF-RGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 307 ~sv~FspdgqllaS~s--D~----TIklWd~-~Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
..++|||||+.|+..+ ++ +|.+||+ +|+ .+..+.++..... ....++|||||+.|+..... ......
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~--~~~~~~ 316 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS--NYDGSLMVGDGSDAPVDVQD--DSGYKI 316 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE--CTTSSEEEEEECCC--------------
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee--cCCCCeEccCCCcceeEeee--cccccc
Confidence 7889999999776654 22 3999999 577 4556665322100 01124799999998854310 000001
Q ss_pred CCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CC
Q 012410 378 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RH 456 (464)
Q Consensus 378 s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~D 456 (464)
+.+..|.+||+.+|+. ..|..|......... .....+.+++|||||+.|+.++ .+
T Consensus 317 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~spDg~~l~~~s~~~ 372 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEG-----------------------DRQVTHPHPSFTPDDKQILFTSDVH 372 (388)
T ss_dssp CCCCEEEEEETTTTEE-EEEEECCCCCCCBTT-----------------------BSSTTCCCCEECTTSSEEEEEECTT
T ss_pred CCCCEEEEEeccCCce-EEeccccCccccccc-----------------------ccccCCCCccCCCCCCEEEEEecCC
Confidence 2378999999988876 556555420000000 0001366789999999988766 58
Q ss_pred CcEEecc
Q 012410 457 GLVHVWS 463 (464)
Q Consensus 457 gtVrlWd 463 (464)
|..+||.
T Consensus 373 g~~~l~~ 379 (388)
T 3pe7_A 373 GKPALYL 379 (388)
T ss_dssp SSCEEEE
T ss_pred CceeEEE
Confidence 8888884
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.92 E-value=3.5e-25 Score=237.74 Aligned_cols=308 Identities=10% Similarity=0.032 Sum_probs=208.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCc---eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE---VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~---~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~ 174 (464)
|++++.. .+|.+.+|++.+|+....+.. +.. .+.+++|||||+.|++++..... +.+-.-.++++|++.+|++.
T Consensus 27 g~~~~~~-~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~~la~~~~~~~~-~~~s~~~~i~~~d~~~g~~~ 103 (719)
T 1z68_A 27 QEYLHQS-ADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQFVYLESDYSKL-WRYSYTATYYIYDLSNGEFV 103 (719)
T ss_dssp SEEEEEC-TTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEEETTTTEEC
T ss_pred CeEEEEc-CCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCCeEEEEecCcee-EEeecceEEEEEECCCCccc
Confidence 5555544 589999999999998877743 332 28999999999999997643210 00001169999999999873
Q ss_pred CcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCE-----------------eEEEE
Q 012410 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHV-----------------QEIKI 234 (464)
Q Consensus 175 ~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V-----------------~~Vaf 234 (464)
...++ . ..+..++|| |||+.||+++ |++|++||+.+|++.....+ ..| .+++|
T Consensus 104 ~~~~l-~----~~~~~~~~S-PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 104 RGNEL-P----RPIQYLCWS-PVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp CSSCC-C----SSBCCEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred cceec-C----cccccceEC-CCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 22222 1 234489998 9999999986 78999999999988653221 112 47899
Q ss_pred eCCC--------c----------------------------------eeEEEEEcCCCcEE---E-----EEeeCCccee
Q 012410 235 RSSS--------H----------------------------------VPLKILSIEDGTVL---K-----VFYHLLHRNK 264 (464)
Q Consensus 235 s~s~--------d----------------------------------~tIklWdi~tG~~l---~-----tl~~~~~~~~ 264 (464)
||++ | .+|++||+++|+++ + ++.++...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 8841 1 17899999999863 2 1223445679
Q ss_pred eEEEEccCCCeEEEEe---CC--CeEEEEE----CCCCcEEEEc----ccCCCceE-----EEEEcCCCcEEEE--Ee-C
Q 012410 265 KVDFIEQFNEKLLVKQ---EN--ENLQILD----VRNAELMEVS----RTEFMTPS-----AFIFLYENQLFLT--FR-N 323 (464)
Q Consensus 265 ~V~F~~~~~~~lla~s---~D--~tIkIWD----v~tg~~l~~l----~gh~~~v~-----sv~FspdgqllaS--~s-D 323 (464)
+++|+|+ +++++.. .+ ..|.+|| +.+|++..++ .+|..++. .++|||||+.|+. +. |
T Consensus 257 ~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 257 WLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999995 5666642 22 3488899 9999988877 47777776 7899999995543 44 5
Q ss_pred C--eEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--CeE-EEEEc
Q 012410 324 R--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--GKC-LAKIN 398 (464)
Q Consensus 324 ~--TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t--G~c-l~tl~ 398 (464)
+ .|.+||+.|...+.|..+... |..+.++ ||+.|+..+... ...+++++||.+.. |+. ...|.
T Consensus 335 g~~~l~~~~~~~~~~~~lt~~~~~-----v~~~~~~-d~~~i~~~~~~~------~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 335 GYKHIHYIKDTVENAIQITSGKWE-----AINIFRV-TQDSLFYSSNEF------EEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp SCEEEEEESSCSTTCEECSCSSSC-----EEEEEEE-CSSEEEEEESCG------GGCTTCBEEEEEECSSSSCCEEESS
T ss_pred CceEEEEEECCCCceEecccCceE-----EEEEEEE-eCCEEEEEEecC------CCCCceEEEEEEeCCCCCCCceecc
Confidence 5 677778854336677766433 7788888 888887765400 01158899998753 421 22222
Q ss_pred ----cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-eeCC--CcEEecc
Q 012410 399 ----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRH--GLVHVWS 463 (464)
Q Consensus 399 ----gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS-gs~D--gtVrlWd 463 (464)
+|.. .+.++.|||||+.|+. ++.+ .++.+||
T Consensus 403 ~~~~~~~~----------------------------------~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 403 CHLRKERC----------------------------------QYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp TTTTTTTB----------------------------------CBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred CccCCCCC----------------------------------ceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 2332 6788999999998773 4433 4577775
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=2.2e-23 Score=200.11 Aligned_cols=274 Identities=6% Similarity=-0.063 Sum_probs=191.7
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
+.++++...++.+.+||..+++.+..+.......+.+++|+|+|+.+.+++ ..+ .++.+|++.+|+.....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~---~~~------~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHY------GDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTT------TEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe---CCC------CcEEEEeCCCCcEEEEE
Confidence 678888889999999999999999988664422478999999999776633 333 58999999888864322
Q ss_pred cceee--ccccCceEEEEeCCCCcEEEEecCC------------CcEEEEeCCCCeE---EEEec-CCCEeEEEEeCCC-
Q 012410 178 ALFES--ESLKWPGFVEFDDVNGKVLTYSAQD------------SIYKVFDLKNYTM---LYSIS-DKHVQEIKIRSSS- 238 (464)
Q Consensus 178 ~l~~~--~~~~~~~~VaFs~pdGk~LaSgs~D------------~tiKlWdl~tg~~---l~tl~-~~~V~~Vafs~s~- 238 (464)
.+... .....|..++|+ |||+.|+.++.| ++|.+||+++++. +..+. ...+.+++|+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp ESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred EcccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 21110 001235689997 899999998866 8999999998553 34443 3468889999863
Q ss_pred ----ceeEEEEEcCCCcEEEEEeeCC--c----------------------ceeeEEEEccCCCeEEE-EeCCCeEEEEE
Q 012410 239 ----HVPLKILSIEDGTVLKVFYHLL--H----------------------RNKKVDFIEQFNEKLLV-KQENENLQILD 289 (464)
Q Consensus 239 ----d~tIklWdi~tG~~l~tl~~~~--~----------------------~~~~V~F~~~~~~~lla-~s~D~tIkIWD 289 (464)
+..|.+||+++|+++.++.... . ....++|.++ +..... ......+-.+|
T Consensus 161 l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 161 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD-DKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEE
T ss_pred EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC-CcCCccccccceeEEEEe
Confidence 2359999999999998886321 0 1233555432 100000 00011112244
Q ss_pred CCCCcEEE-EcccCCCceEEEEEcC-CCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 290 VRNAELME-VSRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 290 v~tg~~l~-~l~gh~~~v~sv~Fsp-dgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
..+++... .+..+...+.+++|+| ||++++++ +++|.+||+ +|++++++..+.. +..++|+|||++|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHT------YYCVAFDKKGDKLYLG 312 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSC------CCEEEECSSSSCEEEE
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCC------ccceEECCCCCEEEEe
Confidence 44444221 1223556788999999 99999988 899999999 6999888874432 5689999999988887
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 367 CKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 367 s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+. +++|++||+.+++++++++..
T Consensus 313 ~~-----------~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 313 GT-----------FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SB-----------SSEEEEEETTTTEEEEEEECS
T ss_pred cC-----------CCeEEEEeccccceeeeeecC
Confidence 65 899999999999999999765
No 154
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=4.3e-23 Score=198.48 Aligned_cols=219 Identities=13% Similarity=0.099 Sum_probs=165.8
Q ss_pred EEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCcE-EEEEeeC
Q 012410 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGTV-LKVFYHL 259 (464)
Q Consensus 192 aFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~~-l~tl~~~ 259 (464)
.|+...+.++++++.|++|++||+++++++.++. ...+ .++|+|+ .+..|.+||+++|++ ..++..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 4654455668899999999999999999987765 3456 9999884 367999999999998 7777765
Q ss_pred CcceeeEEEEccCCCeEEEEeCC-C--eEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCe-EEEEeCC-
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQEN-E--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRT-VAVWNFR- 332 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s~D-~--tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~T-IklWd~~- 332 (464)
......++|+|+ +.+++++..+ + +|++||+.+++++..+..+ ..+..++|+|||+ ++++.. +++ |.+|+++
T Consensus 83 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 83 QSSMADVDITPD-DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp SSCCCCEEECTT-SSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCccceEECCC-CCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 445455999984 5566654444 3 9999999999999887765 4578999999998 455555 688 9999983
Q ss_pred -CceE----EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE---EEEEccCCCCC
Q 012410 333 -GELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC---LAKINATNCSP 404 (464)
Q Consensus 333 -Ge~l----~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c---l~tl~gh~~~~ 404 (464)
|++. +.+... .. ...++|+|||++|+.++. .+++|++||+.+|++ +.++..+.
T Consensus 161 ~g~~~~~~~~~~~~~-~~-----~~~~~~spdg~~l~v~~~----------~~~~v~v~d~~~~~~~~~~~~~~~~~--- 221 (331)
T 3u4y_A 161 DGVLFDTGQEFISGG-TR-----PFNITFTPDGNFAFVANL----------IGNSIGILETQNPENITLLNAVGTNN--- 221 (331)
T ss_dssp TCCEEEEEEEEECSS-SS-----EEEEEECTTSSEEEEEET----------TTTEEEEEECSSTTSCEEEEEEECSS---
T ss_pred CCcEeecCCccccCC-CC-----ccceEECCCCCEEEEEeC----------CCCeEEEEECCCCcccceeeeccCCC---
Confidence 5442 222221 22 678999999996655543 289999999999999 88887653
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEeccC
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd~ 464 (464)
.+..++|+|||+.|+.++ .++.|.+||.
T Consensus 222 --------------------------------~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 222 --------------------------------LPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp --------------------------------CCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred --------------------------------CCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 567799999999876655 5888999983
No 155
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.7e-23 Score=193.93 Aligned_cols=210 Identities=10% Similarity=0.024 Sum_probs=164.4
Q ss_pred EecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC-------CceeEEEEEcCC-CcEEEEEeeC-CcceeeEEEEccC
Q 012410 203 YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS-------SHVPLKILSIED-GTVLKVFYHL-LHRNKKVDFIEQF 272 (464)
Q Consensus 203 Sgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s-------~d~tIklWdi~t-G~~l~tl~~~-~~~~~~V~F~~~~ 272 (464)
+++.|++|++||+.+++...... ...|.+++|+|+ .+..|.+||+++ |++...+.++ ...+..++|+|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd- 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD- 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT-
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCC-
Confidence 46789999999999999875443 678999999985 456899999999 9888776643 356788999994
Q ss_pred CCeEEEEe--CCCeEEEEE--CCCCcEEEEcccCCCceEEEEEcCCCcEEE-EEe-CCeEEEEeC--CCceEEEeccCCC
Q 012410 273 NEKLLVKQ--ENENLQILD--VRNAELMEVSRTEFMTPSAFIFLYENQLFL-TFR-NRTVAVWNF--RGELVTSFEDHLL 344 (464)
Q Consensus 273 ~~~lla~s--~D~tIkIWD--v~tg~~l~~l~gh~~~v~sv~Fspdgqlla-S~s-D~TIklWd~--~Ge~l~tl~gH~~ 344 (464)
+..+++++ .|+.++||+ +.+++. +.+..+. .+..++|+|||+.|+ +++ |++++||++ .+..+..+..|..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCce-EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 56677777 445566655 456663 4444443 488899999999887 666 999999996 4556677888876
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 345 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 345 ~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
. +.+++|+|||++|+.++. .|+.++||++. +++++..+..|..
T Consensus 174 ~-----~~~~~~s~dg~~l~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~--------------------- 217 (297)
T 2ojh_A 174 R-----NDGPDYSPDGRWIYFNSS----------RTGQMQIWRVRVDGSSVERITDSAY--------------------- 217 (297)
T ss_dssp C-----EEEEEECTTSSEEEEEEC----------TTSSCEEEEEETTSSCEEECCCCSE---------------------
T ss_pred c-----cccceECCCCCEEEEEec----------CCCCccEEEECCCCCCcEEEecCCc---------------------
Confidence 6 789999999998887653 28899999986 6778888877764
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEeeCC-----------CcEEeccC
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-----------GLVHVWSN 464 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D-----------gtVrlWd~ 464 (464)
.+.+++|+|||+.||.++.| +.|.+||.
T Consensus 218 -------------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 218 -------------GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp -------------EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred -------------ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 78999999999999999876 56999973
No 156
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.91 E-value=1.7e-22 Score=197.83 Aligned_cols=307 Identities=9% Similarity=0.041 Sum_probs=196.7
Q ss_pred eeecccccEeeEeecCCC----ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccC
Q 012410 112 AFSRETNRRICFLNVSPD----EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (464)
Q Consensus 112 ~~~~~~g~~l~~ln~~~~----~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~ 187 (464)
..|..+|+.+..+..... ..+.++.|||||+.|+.++..... ..+.++++.+|+... + +......
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~-------~~l~~~d~~~~~~~~---l-~~~~~~~ 82 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGN-------RNYYLLNLETQQAVQ---L-TEGKGDN 82 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSS-------CEEEEEETTTTEEEE---C-CCSSCBC
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCC-------ceEEEEECCCCcEEE---e-ecCCCCc
Confidence 336678888877744211 226778999999999886533211 367888888877531 1 1111111
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe--cCCCEeE---E----------------EEeCC---------
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQE---I----------------KIRSS--------- 237 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl--~~~~V~~---V----------------afs~s--------- 237 (464)
...++|| |||+.|++.+.+.++.+||+.+++..... ...+... | +++|+
T Consensus 83 ~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 83 TFGGFIS-TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp TTTCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred cccceEC-CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 1137887 99999999999999999999998865433 3333333 3 34442
Q ss_pred ----CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC------CeEEEEECCCCcEEEEcccC-CCce
Q 012410 238 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVSRTE-FMTP 306 (464)
Q Consensus 238 ----~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D------~tIkIWDv~tg~~l~~l~gh-~~~v 306 (464)
.+..|.+||+++|++.....+ ...+..++|+|.++.+|+..+.+ ..|.+||+.+++......++ ...+
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELEVIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC 240 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred ccCCCcceEEEEECCCCcEEeeccC-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence 456899999999998776654 35678999999445556665533 46889998877765554432 2357
Q ss_pred EEEEEcCCCcEEEEEe-C-----CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCC---cc--
Q 012410 307 SAFIFLYENQLFLTFR-N-----RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEP---ED-- 373 (464)
Q Consensus 307 ~sv~FspdgqllaS~s-D-----~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~---~~-- 373 (464)
..++|||||+.|+..+ + ++|.+||+ +|+..... .... .. ++|+| ||++|+.++...| .+
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECCS------EE-EEEECSSSSEEEEEECCC--------
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCCC------CC-CCccCCCCceEEEecCCcceeecccc
Confidence 8889999999877775 4 45999999 57654322 2211 22 88999 9999987652110 00
Q ss_pred ccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEe
Q 012410 374 QWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 453 (464)
Q Consensus 374 ~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg 453 (464)
......+..|.+||+.+|+. ..|..|........ .+....+.+++|+|||+.|+.+
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLD-----------------------GDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp --CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBT-----------------------TBSSTTCCCCEECTTSSEEEEE
T ss_pred ccccCCCCcEEEEecccCce-EEccCCCCcccccc-----------------------ccccCCCCCceEccCCCeEEEE
Confidence 00112368999999998885 45555542000000 0000024567899999999877
Q ss_pred eC-CCcEEecc
Q 012410 454 NR-HGLVHVWS 463 (464)
Q Consensus 454 s~-DgtVrlWd 463 (464)
+. ++...||.
T Consensus 369 s~~~~~~~l~~ 379 (396)
T 3c5m_A 369 SDFEGVPAIYI 379 (396)
T ss_dssp ECTTSSCEEEE
T ss_pred ecCCCCceEEE
Confidence 64 67777763
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.6e-21 Score=191.48 Aligned_cols=250 Identities=10% Similarity=0.136 Sum_probs=170.2
Q ss_pred eeEEEEEe--ccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC----CcEEEEeCCC--CeE--EEEec--CCC
Q 012410 161 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKN--YTM--LYSIS--DKH 228 (464)
Q Consensus 161 ~ti~l~~i--~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D----~tiKlWdl~t--g~~--l~tl~--~~~ 228 (464)
+.+.+|.+ .+|++...... ....|..++|| |||++|++++.| ++|.+|++.. |++ +.++. ...
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDA----EVANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEE----ECSCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCEEEEEEeCCCCCEEEeecc----cCCCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence 67888876 56765321111 23567789997 899999999886 7999999865 654 33443 345
Q ss_pred EeEEEEeC-------CCceeEEEEEcCCCcEEEEE----eeC----------CcceeeEEEEccCCCeEEEEe-CCCeEE
Q 012410 229 VQEIKIRS-------SSHVPLKILSIEDGTVLKVF----YHL----------LHRNKKVDFIEQFNEKLLVKQ-ENENLQ 286 (464)
Q Consensus 229 V~~Vafs~-------s~d~tIklWdi~tG~~l~tl----~~~----------~~~~~~V~F~~~~~~~lla~s-~D~tIk 286 (464)
...+++.. ..+++|.+|++.++..+..+ .+. ..+...++|+|+ +..++++. .+++|+
T Consensus 102 p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 102 PCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD-GKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT-SSEEEEEETTTTEEE
T ss_pred cEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC-CCEEEEEeCCCCEEE
Confidence 66666621 25789999999755443322 111 122367999994 55577765 689999
Q ss_pred EEECCCCc-------E------EEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCce--EEEeccCCCCcCC
Q 012410 287 ILDVRNAE-------L------MEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGEL--VTSFEDHLLWHPD 348 (464)
Q Consensus 287 IWDv~tg~-------~------l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~--l~tl~gH~~~~~~ 348 (464)
+|++.... + ......+...+..++|+|||+.++.++ +++|.+||+ +|++ +.++..+.....
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~- 259 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ- 259 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC-
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC-
Confidence 99887543 2 122233445789999999999765555 899999999 6765 334433221101
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCC-CCeEEEEeCC--CCe--EEEEEccCCCCCCcccccCCCCCCccccccc
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGS-AGSINVSSIL--TGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNK 423 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~-DgtIklWdi~--tG~--cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~ 423 (464)
....++|||||++|+.++. . +++|+||++. +|+ .+..+.. ..
T Consensus 260 -~~~~i~~spdg~~l~v~~~----------~~~~~i~v~~~~~~~g~~~~~~~~~~-g~--------------------- 306 (361)
T 3scy_A 260 -GSGDIHLSPDGKYLYASNR----------LKADGVAIFKVDETNGTLTKVGYQLT-GI--------------------- 306 (361)
T ss_dssp -CEEEEEECTTSSEEEEEEC----------SSSCEEEEEEECTTTCCEEEEEEEEC-SS---------------------
T ss_pred -CcccEEECCCCCEEEEECC----------CCCCEEEEEEEcCCCCcEEEeeEecC-CC---------------------
Confidence 1578999999999976654 2 5899999984 566 4555544 22
Q ss_pred cccccccccccccCEEEEEEcCCCCEEEEee-CCCcEEecc
Q 012410 424 SSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWS 463 (464)
Q Consensus 424 ~~~~~~~~~~~l~~V~slafspDg~~LaSgs-~DgtVrlWd 463 (464)
.+..++|||||+.|+.++ .+++|++|+
T Consensus 307 -------------~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 307 -------------HPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp -------------CCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred -------------CCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 567899999999999888 679999964
No 158
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.90 E-value=6.8e-21 Score=181.00 Aligned_cols=224 Identities=11% Similarity=0.244 Sum_probs=180.8
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--------CCEeEEEEe-CC---------CceeEEEE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKIR-SS---------SHVPLKIL 245 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--------~~V~~Vafs-~s---------~d~tIklW 245 (464)
.+..|..|+|+ |+|+++++.+.++.|++||.+ ++.+..+.. ..+..|+|. ++ .+..|.+|
T Consensus 28 ~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 45667799997 899999998999999999986 777776642 468899994 42 16789999
Q ss_pred EcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcCCCcEEEEE
Q 012410 246 SIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 246 di~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~ 321 (464)
| .+|+.+.++. ........++|.++ +.++++ ..++.|.+|| .+|+.+..+. ++...|..++|+|+|+++++.
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEc-CCCCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 9 6799998886 23345689999884 456665 5789999999 4677777654 566789999999999999998
Q ss_pred e-CCeEEEEeCCCceEEEeccCC--CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC-eEEEEeCCCCeEEEEE
Q 012410 322 R-NRTVAVWNFRGELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG-SINVSSILTGKCLAKI 397 (464)
Q Consensus 322 s-D~TIklWd~~Ge~l~tl~gH~--~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg-tIklWdi~tG~cl~tl 397 (464)
+ +++|++||.+|+.+.++..+. .. ...|+|+|||+++++.+. ++ +|++|| .+|+.+.++
T Consensus 182 ~~~~~i~~~~~~g~~~~~~~~~g~~~~-----p~~i~~d~~G~l~v~~~~-----------~~~~i~~~~-~~g~~~~~~ 244 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQYLRQIGGEGITNY-----PIGVGINSNGEILIADNH-----------NNFNLTIFT-QDGQLISAL 244 (286)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTSCS-----EEEEEECTTCCEEEEECS-----------SSCEEEEEC-TTSCEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEccCCccCC-----CcEEEECCCCCEEEEeCC-----------CCEEEEEEC-CCCCEEEEE
Confidence 8 999999999999999886543 33 689999999999998764 65 999999 589999999
Q ss_pred ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 398 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 398 ~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.. ...+.+++|+|||+.+++ +.|++|++|+
T Consensus 245 ~~~~~--------------------------------~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 245 ESKVK--------------------------------HAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EESSC--------------------------------CSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred cccCC--------------------------------CCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 77643 015789999999997777 6799999997
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=4.1e-22 Score=198.20 Aligned_cols=226 Identities=11% Similarity=0.063 Sum_probs=163.2
Q ss_pred CceEEEEeCCCCcEEEEecCCCcEEEEeCC-CCeEEEEec---CCCEeEEEEeC----------C-------------Cc
Q 012410 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DKHVQEIKIRS----------S-------------SH 239 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-tg~~l~tl~---~~~V~~Vafs~----------s-------------~d 239 (464)
.|..++|+ |||++|++++.+ +|.+||+. +|+++.... ...+..++|+| + .+
T Consensus 41 ~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 46689997 899999998888 99999998 898764322 12233333333 2 46
Q ss_pred eeEEEEEcC-CCcEEEEEee----CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECC-CCcEEE--Ecc--cCCCceEE
Q 012410 240 VPLKILSIE-DGTVLKVFYH----LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELME--VSR--TEFMTPSA 308 (464)
Q Consensus 240 ~tIklWdi~-tG~~l~tl~~----~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~-tg~~l~--~l~--gh~~~v~s 308 (464)
+++++|++. +|++..++.. ....+..++|+|+ +.+++++. .+++|++||+. +|++.. .+. .|...|+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 689999997 6887766552 3356789999994 55666665 57899999998 888643 333 24567999
Q ss_pred EEEcCCCcEEEEEe--CCeEEEEeC---CCceEE---E---ec----cCCC------CcCCCCeeEEE-ECCCCCEEEEE
Q 012410 309 FIFLYENQLFLTFR--NRTVAVWNF---RGELVT---S---FE----DHLL------WHPDCNTNNIY-ITSDQDLIISY 366 (464)
Q Consensus 309 v~FspdgqllaS~s--D~TIklWd~---~Ge~l~---t---l~----gH~~------~~~~~~v~sva-fSpDg~~LaSg 366 (464)
++|+|||+.|+.++ +++|.+|++ +|++.. + +. +|.. + +..++ |||||++|+++
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY-----RADVCALTFSGKYMFAS 272 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE-----EEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc-----cccEEEECCCCCEEEEE
Confidence 99999999887766 789999976 477632 2 22 2221 2 67899 99999998876
Q ss_pred ecCCCccccccCCC----CeEEEEeCC-CCeEEEE---EccCCCCCCcccccCCCCCCccccccccccccccccccccCE
Q 012410 367 CKAEPEDQWMEGSA----GSINVSSIL-TGKCLAK---INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 438 (464)
Q Consensus 367 s~~~~~~~~~~s~D----gtIklWdi~-tG~cl~t---l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 438 (464)
+. +.+ ++|++|++. +|+.... +..+.. .+
T Consensus 273 ~~---------~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~----------------------------------~~ 309 (365)
T 1jof_A 273 SR---------ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS----------------------------------GG 309 (365)
T ss_dssp EE---------ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC----------------------------------CT
T ss_pred CC---------CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC----------------------------------Cc
Confidence 54 112 399999996 7886542 333432 34
Q ss_pred EEEEEcC---CCCEEEEeeCC-CcEEecc
Q 012410 439 TSLFYDE---ERNEIYTGNRH-GLVHVWS 463 (464)
Q Consensus 439 ~slafsp---Dg~~LaSgs~D-gtVrlWd 463 (464)
.+++|+| ||+.||+++.+ ++|+||+
T Consensus 310 ~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 310 HSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred ccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 5689999 89999999875 9999996
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=1e-20 Score=185.66 Aligned_cols=261 Identities=13% Similarity=0.129 Sum_probs=175.8
Q ss_pred cCCeEEeeec--ccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEecc--CCCCCccccee
Q 012410 106 HSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDSGFALFE 181 (464)
Q Consensus 106 ~~g~~~~~~~--~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~--G~~~~~~~l~~ 181 (464)
.++.+.+|.+ .+|+....... +......++|+|||+.|++++.....+ .++.+|++.. |++. .+..
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~------~~v~~~~~~~~~g~~~---~~~~ 94 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQ------AAVSAFAFDKEKGTLH---LLNT 94 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTT------CEEEEEEEETTTTEEE---EEEE
T ss_pred CCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCC------CcEEEEEEeCCCCcEE---EeeE
Confidence 4567777754 56665443333 556678899999999999977432233 5889999865 5532 1111
Q ss_pred ec-cccCceEEEEeCCCCcEEEEec-CCCcEEEEeCCCCeEEEEe------c----------CCCEeEEEEeCC------
Q 012410 182 SE-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSI------S----------DKHVQEIKIRSS------ 237 (464)
Q Consensus 182 ~~-~~~~~~~VaFs~pdGk~LaSgs-~D~tiKlWdl~tg~~l~tl------~----------~~~V~~Vafs~s------ 237 (464)
.. .-..|..++| ||+.|+.++ .|++|.+|++.+...+..+ . ...+.+++|+|+
T Consensus 95 ~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 95 QKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred eccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 11 1234556777 677666555 6889999999754332111 1 123578999985
Q ss_pred ---CceeEEEEEcCCCcE------E------EEEe-eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEE--E-
Q 012410 238 ---SHVPLKILSIEDGTV------L------KVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELM--E- 297 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~------l------~tl~-~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l--~- 297 (464)
.+..|++|++..+.. + ..+. ........++|+|+ +..++++. .+++|++||+.+|++. .
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 356899998875431 1 1222 22244578999994 55666666 7999999999988762 2
Q ss_pred --EcccCCCceEEEEEcCCCcEEEEEe-C--CeEEEEeCC---Cc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 298 --VSRTEFMTPSAFIFLYENQLFLTFR-N--RTVAVWNFR---GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 298 --~l~gh~~~v~sv~FspdgqllaS~s-D--~TIklWd~~---Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
....+...+..++|+|||++|+.+. + ++|+||+++ |+ .+..+.. ... +..++|+|||++|+.++
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~-----~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH-----PRNFIITPNGKYLLVAC 324 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC-----CCEEEECTTSCEEEEEE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC-----CceEEECCCCCEEEEEE
Confidence 3345556788999999999886665 5 799999983 66 4555554 233 67899999999998887
Q ss_pred cCCCccccccCCCCeEEEE--eCCCCeEEEE
Q 012410 368 KAEPEDQWMEGSAGSINVS--SILTGKCLAK 396 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklW--di~tG~cl~t 396 (464)
. .+++|.+| |..+|+....
T Consensus 325 ~----------~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 325 R----------DTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp T----------TTTEEEEEEECTTTCCEEEC
T ss_pred C----------CCCCEEEEEEECCCCcEeec
Confidence 4 27999995 6678887554
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.89 E-value=9.1e-21 Score=190.60 Aligned_cols=285 Identities=9% Similarity=0.064 Sum_probs=200.7
Q ss_pred cCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec--
Q 012410 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-- 183 (464)
Q Consensus 106 ~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~-- 183 (464)
.++.+.+||..+|+.+..+.. +... .++|+|||+.|.+++.+.+...++-...++.+||+.+++..+..++....
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEECCCCeEEEEecC-CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 467999999999999998855 3343 89999999999997654322111111268999999988876554432110
Q ss_pred cccCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEE-ecCCCEeEEEEeCC---------CceeEEEEEcCC-C
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKHVQEIKIRSS---------SHVPLKILSIED-G 250 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~t-l~~~~V~~Vafs~s---------~d~tIklWdi~t-G 250 (464)
.-.+|..++|| |||++|..+.. +++|.+||+++++.+.+ +.....+.+.+.|. .|+.+.+|++++ |
T Consensus 106 ~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 106 GLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp BCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred cCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 12467789997 99999987764 68999999999999988 76444444555442 467888888865 7
Q ss_pred cEEEEEe------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE--EEEcc--c----CC----CceEEEEEc
Q 012410 251 TVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSR--T----EF----MTPSAFIFL 312 (464)
Q Consensus 251 ~~l~tl~------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~--l~~l~--g----h~----~~v~sv~Fs 312 (464)
++..... -..+. ..+.++++ +..++..+.+++|.++|+..++. +..+. . +. .....++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDP-IFIAPALD-KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SEEEEEECCCCSCTTTSC-BCSCCEEC-SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred cEeeeccccceEcCCCCc-eEEEeccc-CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 7763321 00011 12334453 45666677889999999876642 22211 0 00 111237899
Q ss_pred CCCcEEEEE-e-C----------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 012410 313 YENQLFLTF-R-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 313 pdgqllaS~-s-D----------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~ 379 (464)
||++.+..+ + + .+|.+||. +++.++++..|. . ++++|||||++|++++
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p------~~ia~spdg~~l~v~n------------ 323 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-A------LSMTIDQQRNLMLTLD------------ 323 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-C------CEEEEETTTTEEEEEC------------
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-e------eEEEECCCCCEEEEeC------------
Confidence 996655443 3 2 38999999 799999999886 3 5899999999999764
Q ss_pred CCeEEEEeCCCC--eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE
Q 012410 380 AGSINVSSILTG--KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 449 (464)
Q Consensus 380 DgtIklWdi~tG--~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~ 449 (464)
+++|.+||..|| ++++++.++.. .-+.++|+|||.+
T Consensus 324 ~~~v~v~D~~t~~l~~~~~i~~~G~----------------------------------~P~~~~~~p~G~~ 361 (361)
T 2oiz_A 324 GGNVNVYDISQPEPKLLRTIEGAAE----------------------------------ASLQVQFHPVGGT 361 (361)
T ss_dssp SSCEEEEECSSSSCEEEEEETTSCS----------------------------------SEEEEEECCCSCC
T ss_pred CCeEEEEECCCCcceeeEEeccCCC----------------------------------CcEEEEecCCCCC
Confidence 489999999999 99999976654 5678999999974
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=3.4e-22 Score=217.89 Aligned_cols=245 Identities=8% Similarity=0.053 Sum_probs=172.6
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccc-cCceEEEEeCCCCcEEEEecCC---
Q 012410 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL-KWPGFVEFDDVNGKVLTYSAQD--- 207 (464)
Q Consensus 132 i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~-~~~~~VaFs~pdGk~LaSgs~D--- 207 (464)
..++.|+|||+++++ + + .++++|++.+|++...+..++.... .-...++|| |||+.|++++.|
T Consensus 19 ~~~~~w~~dg~~~~~----~--~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~ 85 (740)
T 4a5s_A 19 LYSLRWISDHEYLYK----Q--E------NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQ 85 (740)
T ss_dssp CCCEEECSSSEEEEE----E--T------TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEEC
T ss_pred ccccEECCCCcEEEE----c--C------CcEEEEECCCCceEEEEechhhhhhcccccceEEC-CCCCEEEEEECCeee
Confidence 568999999988877 2 3 5999999999997432222221110 001238998 999999999987
Q ss_pred ------CcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEE-eeCC-----------
Q 012410 208 ------SIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVF-YHLL----------- 260 (464)
Q Consensus 208 ------~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl-~~~~----------- 260 (464)
+.|.|||+++|++.. +. ...++.++|||+ .+..|.+||+.+|++.+.. .+..
T Consensus 86 ~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 86 WRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp SSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred EEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence 445699999999754 33 467999999996 4578999999999876522 1211
Q ss_pred ------cceeeEEEEccCCCeEEEEeCCC------------------------------------eEEEEECCC---C--
Q 012410 261 ------HRNKKVDFIEQFNEKLLVKQENE------------------------------------NLQILDVRN---A-- 293 (464)
Q Consensus 261 ------~~~~~V~F~~~~~~~lla~s~D~------------------------------------tIkIWDv~t---g-- 293 (464)
.....++|+| ++.+|+..+.|. +|+|||+.+ |
T Consensus 165 ~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred ccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 1224589999 466677665332 588999999 8
Q ss_pred -cEEEEcc-----cCCCceEEEEEcCCCcEEEEEe-----CCeEEEEeC-CCc----eEE--Ee--ccCCCCcCCCCeeE
Q 012410 294 -ELMEVSR-----TEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNF-RGE----LVT--SF--EDHLLWHPDCNTNN 353 (464)
Q Consensus 294 -~~l~~l~-----gh~~~v~sv~FspdgqllaS~s-----D~TIklWd~-~Ge----~l~--tl--~gH~~~~~~~~v~s 353 (464)
++++... +|...+.+++|||||++++... +.+|.+||+ +|+ |.. ++ ++|..|+......+
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE 323 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence 5555543 4778899999999999777654 237999999 688 543 33 77988843100127
Q ss_pred EEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 354 IYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 354 vafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
++|||||+.|+ ..+.. +....|.+||+.+|++.+.-.+
T Consensus 324 p~fspDG~~l~~~~s~~--------~G~~~l~~~~~~~~~~~~lT~g 362 (740)
T 4a5s_A 324 PHFTLDGNSFYKIISNE--------EGYRHICYFQIDKKDCTFITKG 362 (740)
T ss_dssp CEECTTSSEEEEEEECT--------TSCEEEEEEETTCSSCEESCCS
T ss_pred ceEcCCCCEEEEEEEcC--------CCceEEEEEECCCCceEecccC
Confidence 89999999988 77641 2256899999988877654333
No 163
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.2e-21 Score=183.32 Aligned_cols=222 Identities=11% Similarity=0.126 Sum_probs=157.0
Q ss_pred CCcEEEEecCCCcEEEEeCC-CCe--EEEEec-CCCEeEEEEeCC---------CceeEEEEEcC--CCcE--EEEEeeC
Q 012410 197 NGKVLTYSAQDSIYKVFDLK-NYT--MLYSIS-DKHVQEIKIRSS---------SHVPLKILSIE--DGTV--LKVFYHL 259 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~-tg~--~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~--tG~~--l~tl~~~ 259 (464)
+..++++++.|++|++||+. +|+ .+.++. ...+..++|+|+ .++.|++|++. +|+. +.++...
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 34456666889999999995 553 344444 567889999884 23899999998 7774 3455533
Q ss_pred CcceeeEEEEccCCCeEEEEe-CCCeEEEEEC---CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-C
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV---RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-R 332 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv---~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~ 332 (464)
..+..++|+|+ +..+++++ .|++|++||+ .+++.+..+.++. .+.+++|+|||+.|++++ |++|++||+ +
T Consensus 84 -~~~~~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 84 -GSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp -SCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred -CCCcEEEEcCC-CCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 36789999984 56677765 6899999999 5556667766654 588999999998766654 999999999 5
Q ss_pred -CceEE----EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC--CCeE--EEEEccCCCC
Q 012410 333 -GELVT----SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL--TGKC--LAKINATNCS 403 (464)
Q Consensus 333 -Ge~l~----tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~--tG~c--l~tl~gh~~~ 403 (464)
|++.. .+..+.. ..+..++|+|||++|+.++. .+++|++||+. +|+. +..+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~----~~~~~~~~~pdg~~l~~~~~----------~~~~i~~~~~~~~~g~~~~~~~~~~~~~- 225 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEG----AGPRHMVFHPNEQYAYCVNE----------LNSSVDVWELKDPHGNIECVQTLDMMPE- 225 (343)
T ss_dssp TSCEEEEEEEEEECSTT----CCEEEEEECTTSSEEEEEET----------TTTEEEEEESSCTTSCCEEEEEEECSCT-
T ss_pred CCceeeecccccccCCC----CCcceEEECCCCCEEEEEeC----------CCCEEEEEEecCCCCcEEEEeeccccCc-
Confidence 76543 3333322 12678999999997766552 28999999994 4543 333321110
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-EeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs~DgtVrlWd 463 (464)
.. .....+.+++|+|||+.|+ +++.|+.|++||
T Consensus 226 --~~-------------------------~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 226 --NF-------------------------SDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp --TC-------------------------CSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --cc-------------------------cccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 00 0011677899999999887 666899999997
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.88 E-value=8.1e-21 Score=186.88 Aligned_cols=231 Identities=13% Similarity=0.088 Sum_probs=181.2
Q ss_pred ccCceEEEEeCCCCcEEEEecCC------------------------CcEEEEeCCCCeEEEEecC---CCEeEEEEeCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQD------------------------SIYKVFDLKNYTMLYSISD---KHVQEIKIRSS 237 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D------------------------~tiKlWdl~tg~~l~tl~~---~~V~~Vafs~s 237 (464)
++.|..|+|+ |+|+++++.+.+ ++|.+||..+|+++..+.. .....|+|+|+
T Consensus 23 l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 4566789997 899999998888 4799999999999877652 46889999874
Q ss_pred --------CceeEEEEEcCCCc--EEEEEe---------eCCcceeeEEEEccCCCeEEEE-e-CCCeEEEEECCCCcEE
Q 012410 238 --------SHVPLKILSIEDGT--VLKVFY---------HLLHRNKKVDFIEQFNEKLLVK-Q-ENENLQILDVRNAELM 296 (464)
Q Consensus 238 --------~d~tIklWdi~tG~--~l~tl~---------~~~~~~~~V~F~~~~~~~lla~-s-~D~tIkIWDv~tg~~l 296 (464)
.+..|++||.. |+ .+.++. .+......|+|.|. ++.++++ + .++.|++|| .+|+++
T Consensus 102 g~l~v~d~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp SCEEEEETTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCEEEEECCCCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 45789999985 55 677763 22335689999884 3556554 4 599999999 789988
Q ss_pred EEcc----------cCCCceEEEEEcCC-CcEEEEEe-CCeEEEEeCC-CceEEEecc--CCCCcCCCCeeEEEECCCCC
Q 012410 297 EVSR----------TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFED--HLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 297 ~~l~----------gh~~~v~sv~Fspd-gqllaS~s-D~TIklWd~~-Ge~l~tl~g--H~~~~~~~~v~svafSpDg~ 361 (464)
.++. ++...|..++|+|+ |+++++.+ +++|++||.+ |+++.++.. +... +.+++|+| |.
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~-----~~~~~~~p-g~ 252 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN-----VFAISYIP-GF 252 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC-----EEEEEEET-TE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC-----cceeeecC-CE
Confidence 8774 34566999999999 89999988 9999999995 999999954 3333 78999999 55
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc---cCCCCCCcccccCCCCCCccccccccccccccccccccCE
Q 012410 362 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN---ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 438 (464)
Q Consensus 362 ~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~---gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 438 (464)
.+++.+. .-.+.+.+.+|++||+.+|+++.++. ++.. ..
T Consensus 253 ~~~~~g~----~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~----------------------------------~p 294 (329)
T 3fvz_A 253 LFAVNGK----PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD----------------------------------MP 294 (329)
T ss_dssp EEEEECC----CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS----------------------------------SE
T ss_pred EEEeCCC----EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC----------------------------------Ce
Confidence 5554332 11223347799999999999999984 3332 78
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 439 TSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 439 ~slafspDg~~LaSgs~DgtVrlWd 463 (464)
.+|+|+|||+.+++...++.|++|+
T Consensus 295 ~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eEEEECCCCCEEEEECCCCEEEEEe
Confidence 9999999999999999999999997
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=2.1e-22 Score=219.49 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=170.1
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC-----C--EeEEE
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----H--VQEIK 233 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~-----~--V~~Va 233 (464)
+.+.|+++..|... .+..+|+|+ |||++|+++ |++|++||+++|++...+..+ . ..+++
T Consensus 3 ~~~tl~~~~~~~~~-----------~~~~~~~w~-~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 3 KTYTLTDYLKNTYR-----------LKLYSLRWI-SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp EECCHHHHHHTCSC-----------CCCCCEEEC-SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE
T ss_pred CceeHHHHhcCccc-----------ccccccEEC-CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceE
Confidence 44556666665431 122279997 899999986 999999999999998776632 1 24578
Q ss_pred EeCCC--------c---------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE
Q 012410 234 IRSSS--------H---------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 296 (464)
Q Consensus 234 fs~s~--------d---------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l 296 (464)
|||+. + ..+.|||+++|++.+ +..+...+..++|+|+ +.+|+.. .|++|.+||+.+|++.
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPd-G~~la~~-~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPV-GHKLAYV-WNNDIYVKIEPNLPSY 145 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSS-TTCEEEE-ETTEEEEESSTTSCCE
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCC-CCEEEEE-ECCeEEEEECCCCceE
Confidence 89852 2 456799999998654 5544467899999994 5555555 5789999999999987
Q ss_pred EE-cccCCCce-----------------EEEEEcCCCcEEEEEe-CC---------------------------------
Q 012410 297 EV-SRTEFMTP-----------------SAFIFLYENQLFLTFR-NR--------------------------------- 324 (464)
Q Consensus 297 ~~-l~gh~~~v-----------------~sv~FspdgqllaS~s-D~--------------------------------- 324 (464)
+. ..++...+ .+++|||||+.||..+ |.
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence 74 33443322 3589999999999987 43
Q ss_pred ---eEEEEeC-C---Cc--eEEEec------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 325 ---TVAVWNF-R---GE--LVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 325 ---TIklWd~-~---Ge--~l~tl~------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+|+|||+ + |+ ....+. +|..+ +.+++|||||+++|..... .+++.+|++||+.
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~wspdg~~~~~~~~r-------~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY-----LCDVTWATQERISLQWLRR-------IQNYSVMDICDYD 293 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEE-----EEEEEEEETTEEEEEEEES-------STTEEEEEEEEEE
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeE-----EEEEEEeCCCeEEEEEeCC-------CCCEEEEEEEECC
Confidence 4888999 5 53 233443 37766 8899999999988776541 2346689999999
Q ss_pred CCe----EEEE--E--ccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE-Eee-CCCc-
Q 012410 390 TGK----CLAK--I--NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGN-RHGL- 458 (464)
Q Consensus 390 tG~----cl~t--l--~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La-Sgs-~Dgt- 458 (464)
+|+ |... + .+|...+.. ....+++|||||+.|+ ..| .+|.
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~-----------------------------~~~~~p~fspDG~~l~~~~s~~~G~~ 344 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGR-----------------------------FRPSEPHFTLDGNSFYKIISNEEGYR 344 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSS-----------------------------SSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred CCccccceeEEEEeeeccCCceEcc-----------------------------CcCCCceEcCCCCEEEEEEEcCCCce
Confidence 999 7643 2 445431000 0123678999999988 776 4554
Q ss_pred -EEecc
Q 012410 459 -VHVWS 463 (464)
Q Consensus 459 -VrlWd 463 (464)
|.+||
T Consensus 345 ~l~~~~ 350 (740)
T 4a5s_A 345 HICYFQ 350 (740)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 44444
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.2e-21 Score=202.50 Aligned_cols=239 Identities=10% Similarity=0.059 Sum_probs=162.3
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCC-------Cc----
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-------SG---- 176 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~-------~~---- 176 (464)
+.+++|+.. +. + +..-+..+++++++..+++++ .+ .++||+...-... ..
T Consensus 23 ~~vri~~~~-~~----~---~~~~~n~lavs~~~~~l~~~~----~d-------gv~v~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
T 2oit_A 23 KKVRIFDSP-EE----L---PKERSSLLAVSNKYGLVFAGG----AS-------GLQIFPTKNLLIQNKPGDDPNKIVDK 83 (434)
T ss_dssp CEEECSCCC-SS----C---CCSCCBCEEEETTTTEEEEEE----TT-------EEEEEEHHHHCCCCCTTCCTTCEEEC
T ss_pred eeEEecCCc-cc----c---CCCCccEEEEecCCCEEEEEC----CC-------EEEEEEchHhhhhcccccCccccccc
Confidence 457777532 11 1 334478899999999988833 33 2667664211100 00
Q ss_pred ccceeeccccCceEEEEeCCCCcEEE----EecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLT----YSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTV 252 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~La----Sgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~ 252 (464)
.+..+..+-..+..|+|+ |||++|| +|+.|++|+|||+.++.. .. .....++ ..
T Consensus 84 ~~~~~~~~~~~v~~l~~s-pdg~~lav~~~sgs~d~~v~iwd~~~~~~-----~~--------~~~~~~~--------~~ 141 (434)
T 2oit_A 84 VQGLLVPMKFPIHHLALS-CDNLTLSACMMSSEYGSIIAFFDVRTFSN-----EA--------KQQKRPF--------AY 141 (434)
T ss_dssp CCCEEECCSSCEEEEEEC-TTSCEEEEEEEETTTEEEEEEEEHHHHHC-----TT--------CSSCCCS--------EE
T ss_pred CccccccCCCcccEEEEc-CCCCEEEEEEeccCCCceEEEEEcccccc-----CC--------cCCccee--------ee
Confidence 000111111234589997 8999999 999999999999875410 00 0000000 11
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
++.+.+|...+.+|+|+|..+..+++++.|++|+|||+++++++....+|...|.+++|+|+|++||+++ |++|++||.
T Consensus 142 ~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~ 221 (434)
T 2oit_A 142 HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLP 221 (434)
T ss_dssp EECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred eeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEcc
Confidence 2334445577899999996566777799999999999999988887888999999999999999999999 999999999
Q ss_pred CCceEEEeccCCCCcCC--CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 332 RGELVTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~--~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+|+...++..|.....+ ..|.+++|+|++.++++++..+... .....+++||+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~----~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 222 TLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL----ETSPDVVMALLPKK 279 (434)
T ss_dssp TCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS----SSCCEEEEEECCCT
T ss_pred CCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc----CCCCceEEEEeccC
Confidence 99988888877542210 1388999999999998877521000 00134999998754
No 167
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=6.8e-22 Score=204.32 Aligned_cols=212 Identities=9% Similarity=0.018 Sum_probs=156.0
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEE
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F 268 (464)
..++++ +++.+|+.++.|+ ++||+...... . ........++...... .++. +...+.+|+|
T Consensus 40 n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~--~-----------~~~~~~~~~~~~~~~~---~~~~-~~~~v~~l~~ 100 (434)
T 2oit_A 40 SLLAVS-NKYGLVFAGGASG-LQIFPTKNLLI--Q-----------NKPGDDPNKIVDKVQG---LLVP-MKFPIHHLAL 100 (434)
T ss_dssp BCEEEE-TTTTEEEEEETTE-EEEEEHHHHCC--C-----------CCTTCCTTCEEECCCC---EEEC-CSSCEEEEEE
T ss_pred cEEEEe-cCCCEEEEECCCE-EEEEEchHhhh--h-----------cccccCcccccccCcc---cccc-CCCcccEEEE
Confidence 379998 7888999999887 99998642110 0 0000101111111111 1222 2356899999
Q ss_pred EccCCCeEE----EEeCCCeEEEEECCCC--------c---EEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEEEEeC
Q 012410 269 IEQFNEKLL----VKQENENLQILDVRNA--------E---LMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 269 ~~~~~~~ll----a~s~D~tIkIWDv~tg--------~---~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIklWd~ 331 (464)
+|+ +..|+ +++.|++|+|||+.++ + .++.+.+|...|.+++|+|+ +++||+++ |++|+|||+
T Consensus 101 spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~ 179 (434)
T 2oit_A 101 SCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV 179 (434)
T ss_dssp CTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred cCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence 994 56666 4668999999999876 1 36788899999999999998 89999999 999999999
Q ss_pred -CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCccccc
Q 012410 332 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDEL 410 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~ 410 (464)
+++++....+|... |.+++|+|||++||+|+. ||+|++||+. |+...++..|...-
T Consensus 180 ~~~~~~~~~~~~~~~-----v~~v~wspdg~~lasgs~-----------dg~v~iwd~~-~~~~~~~~~~~~~~------ 236 (434)
T 2oit_A 180 TETVKVCATLPSTVA-----VTSVCWSPKGKQLAVGKQ-----------NGTVVQYLPT-LQEKKVIPCPPFYE------ 236 (434)
T ss_dssp SSSEEEEEEECGGGC-----EEEEEECTTSSCEEEEET-----------TSCEEEECTT-CCEEEEECCCTTCC------
T ss_pred CCCcceeeccCCCCc-----eeEEEEcCCCCEEEEEcC-----------CCcEEEEccC-CcccccccCCcccC------
Confidence 58888888888877 899999999999999997 9999999987 88888887775300
Q ss_pred CCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-eeCCCc------EEeccC
Q 012410 411 GSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRHGL------VHVWSN 464 (464)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS-gs~Dgt------VrlWd~ 464 (464)
+++-..|.+++|+|++..+++ ++.||. +++|+.
T Consensus 237 ---------------------~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 237 ---------------------SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp ---------------------TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred ---------------------CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 000117899999999998854 344543 888873
No 168
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=5.9e-20 Score=178.89 Aligned_cols=240 Identities=9% Similarity=0.170 Sum_probs=163.2
Q ss_pred cceeehhcc---CCeEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cC
Q 012410 98 RDIVFALAH---SGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RG 171 (464)
Q Consensus 98 g~~l~~l~~---~g~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G 171 (464)
|+ |++.+. ++.+.+|++.+|+ .+..+ ..+...+..++|+|||+.|++++ . .+ .++.+|++. .|
T Consensus 51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~--~-~~------~~v~v~~~~~~g 119 (347)
T 3hfq_A 51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSAN--Y-HK------GTAEVMKIAADG 119 (347)
T ss_dssp CE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEE--T-TT------TEEEEEEECTTS
T ss_pred Ce-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEe--C-CC------CEEEEEEeCCCC
Confidence 66 454444 6899999987666 44443 23455688999999999998855 2 33 589999994 44
Q ss_pred CCCCcccceeec--------cccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-CCeEEEEecCCCEeEEEEeCCCceeE
Q 012410 172 KPDSGFALFESE--------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKHVQEIKIRSSSHVPL 242 (464)
Q Consensus 172 ~~~~~~~l~~~~--------~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-tg~~l~tl~~~~V~~Vafs~s~d~tI 242 (464)
.... ...+... ...++..++|+ |||++++++..+++|++||+. +|++.... .+
T Consensus 120 ~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~------~~---------- 181 (347)
T 3hfq_A 120 ALTL-TDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDLGSDKVYVYNVSDAGQLSEQS------VL---------- 181 (347)
T ss_dssp CEEE-EEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEETTTTEEEEEEECTTSCEEEEE------EE----------
T ss_pred Ceee-cceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeCCCCEEEEEEECCCCcEEEee------eE----------
Confidence 4311 0111100 11346689997 899988888889999999987 55432110 00
Q ss_pred EEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCC--CcEE--EEcccCC------CceEEEEE
Q 012410 243 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--AELM--EVSRTEF------MTPSAFIF 311 (464)
Q Consensus 243 klWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~t--g~~l--~~l~gh~------~~v~sv~F 311 (464)
....| .....++|+|+ +..+++. ..+++|++||+.. |++. ..+.... ..+.+++|
T Consensus 182 ---~~~~g----------~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (347)
T 3hfq_A 182 ---TMEAG----------FGPRHLVFSPD-GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL 247 (347)
T ss_dssp ---ECCTT----------CCEEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE
T ss_pred ---EcCCC----------CCCceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE
Confidence 01111 23356788884 5556664 5889999999874 6642 2332222 45889999
Q ss_pred cCCCcEE-EEEe-CCeEEEEeCC--C--ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 312 LYENQLF-LTFR-NRTVAVWNFR--G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 312 spdgqll-aS~s-D~TIklWd~~--G--e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
+|||++| ++.. +++|++||+. | +.+.++..|... +..++|+|||++|++++. .+++|.+
T Consensus 248 spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~-----~~~~~~spdg~~l~v~~~----------~~~~v~v 312 (347)
T 3hfq_A 248 SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF-----PRDFDLDPTEAFVVVVNQ----------NTDNATL 312 (347)
T ss_dssp CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC-----CCEEEECTTSSEEEEEET----------TTTEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC-----cCeEEECCCCCEEEEEEc----------CCCcEEE
Confidence 9999966 6666 9999999984 5 456677777665 679999999999988875 2689999
Q ss_pred E--eCCCCeEEE
Q 012410 386 S--SILTGKCLA 395 (464)
Q Consensus 386 W--di~tG~cl~ 395 (464)
| |..+|+...
T Consensus 313 ~~~d~~tg~l~~ 324 (347)
T 3hfq_A 313 YARDLTSGKLSL 324 (347)
T ss_dssp EEECTTTCCEEE
T ss_pred EEEeCCCCeEEe
Confidence 9 767888654
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=8.6e-20 Score=181.42 Aligned_cols=257 Identities=8% Similarity=0.016 Sum_probs=174.5
Q ss_pred CeEEeee--cccccEe--eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec-cCCCCCcccceee
Q 012410 108 GVCAAFS--RETNRRI--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFALFES 182 (464)
Q Consensus 108 g~~~~~~--~~~g~~l--~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~-~G~~~~~~~l~~~ 182 (464)
+-+.+|+ ..+|+.- ..........+..++|+|||+.|++++ .+ ++.+|++. +|++.. +.+.
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~----~~-------~v~~~~~~~~g~~~~---~~~~ 79 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA----MK-------KWSSFAVKSPTEIVH---EASH 79 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE----BT-------EEEEEEEEETTEEEE---EEEE
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc----cc-------eEEEEEECCCCCEEE---eeEe
Confidence 3455544 3566542 222112334577899999999998854 22 78999997 777532 1111
Q ss_pred ccccCceEEEEeCCCCc--EEEEec-------------CCCcEEEEeCC-CCeEEEEec------CCCEeEEEEeCC---
Q 012410 183 ESLKWPGFVEFDDVNGK--VLTYSA-------------QDSIYKVFDLK-NYTMLYSIS------DKHVQEIKIRSS--- 237 (464)
Q Consensus 183 ~~~~~~~~VaFs~pdGk--~LaSgs-------------~D~tiKlWdl~-tg~~l~tl~------~~~V~~Vafs~s--- 237 (464)
...+.|..++|+ |||+ +|++++ .|+++++|++. +|++...+. ...+.+++|+|+
T Consensus 80 ~~~g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~ 158 (365)
T 1jof_A 80 PIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY 158 (365)
T ss_dssp ECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred ecCCCCccEEEC-CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE
Confidence 111345578997 8999 455554 69999999997 587754432 457999999985
Q ss_pred ------CceeEEEEEcC-CCcEEE--EEee--CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECC--CCcEE------E
Q 012410 238 ------SHVPLKILSIE-DGTVLK--VFYH--LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NAELM------E 297 (464)
Q Consensus 238 ------~d~tIklWdi~-tG~~l~--tl~~--~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~--tg~~l------~ 297 (464)
.+..|++|++. +|++.. .+.. +....+.++|+|+ +..+++++ .+++|++|++. +|++. .
T Consensus 159 l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 159 LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 34689999998 898643 3431 1345689999994 55666666 57999999765 67753 2
Q ss_pred Eccc----CCC------ceEEEE-EcCCCcEEEEEe--CC-----eEEEEeC--CCceEE---EeccCCCCcCCCCeeEE
Q 012410 298 VSRT----EFM------TPSAFI-FLYENQLFLTFR--NR-----TVAVWNF--RGELVT---SFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 298 ~l~g----h~~------~v~sv~-FspdgqllaS~s--D~-----TIklWd~--~Ge~l~---tl~gH~~~~~~~~v~sv 354 (464)
++.. |.. .+.+++ |+|||+.|++++ +. +|++|++ +|++.. .+..+... ...+
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~-----~~~~ 312 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSN 312 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC-----cccc
Confidence 3322 222 588999 999999877665 33 8999998 487654 23334433 4578
Q ss_pred EECC---CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 355 YITS---DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 355 afSp---Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+|+| ||++|++++. .+++|+||++..+ -|..
T Consensus 313 a~sp~~~dg~~l~v~~~----------~~~~v~v~~~~~~-~l~~ 346 (365)
T 1jof_A 313 AVSPCPWSDEWMAITDD----------QEGWLEIYRWKDE-FLHR 346 (365)
T ss_dssp CEEECTTCTTEEEEECS----------SSCEEEEEEEETT-EEEE
T ss_pred eecCCCcCCCEEEEEEc----------CCCeEEEEEEchh-hCce
Confidence 9999 8999999875 2599999998665 3443
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.84 E-value=2.9e-19 Score=189.66 Aligned_cols=280 Identities=10% Similarity=0.006 Sum_probs=183.1
Q ss_pred cceEEEEeccceeehhcc----CCeEEeeecccccEeeEeecCCCceEE---------EEEEe--eCCCE-EEEEEeecC
Q 012410 89 TKVIEIVAARDIVFALAH----SGVCAAFSRETNRRICFLNVSPDEVIR---------SLFYN--KNNDS-LITVSVYAS 152 (464)
Q Consensus 89 s~v~~~~~ag~~l~~l~~----~g~~~~~~~~~g~~l~~ln~~~~~~i~---------Sv~fs--~~g~~-l~svSa~~s 152 (464)
..+....+.|+-++.+.. ++...+|.+..+.....+.. +...++ +.+++ |||+. |+.++ +.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~-~~- 100 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP-APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH-FG- 100 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC-TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB-TT-
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC-CCccccccccccCCccceeeeecCCCeEEEEEE-CC-
Confidence 345556666665555544 67888998655655666644 434455 56555 99998 66522 11
Q ss_pred CCCcccceeeEEEEEec--c-CCCCCcccceeec---cccCceEEEEeCCCCcEEEEecCC----------CcEEEEeCC
Q 012410 153 DNFSSLKCRSTKIEYIR--R-GKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQD----------SIYKVFDLK 216 (464)
Q Consensus 153 ddfs~L~~~ti~l~~i~--~-G~~~~~~~l~~~~---~~~~~~~VaFs~pdGk~LaSgs~D----------~tiKlWdl~ 216 (464)
+ ..+.++++. . |+.. ++.... +...+..++|| |||+.|++++.| .+|++||+.
T Consensus 101 -~------~~l~~~~~~~~g~~~~~---~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 101 -D------QRLYAFEPDAPGGAVPR---PLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp -T------CCEEEECTTSTTCCCCE---ECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred -C------CeEEEEcCCCCCCCCCE---eccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 2 334444433 2 4321 111100 11234589998 999999999988 689999999
Q ss_pred C------CeEEEEe-c-CCCEeEEEEeCC---------C-------ceeEEEEEcC-CC---cEEEEEeeCCcceeeEEE
Q 012410 217 N------YTMLYSI-S-DKHVQEIKIRSS---------S-------HVPLKILSIE-DG---TVLKVFYHLLHRNKKVDF 268 (464)
Q Consensus 217 t------g~~l~tl-~-~~~V~~Vafs~s---------~-------d~tIklWdi~-tG---~~l~tl~~~~~~~~~V~F 268 (464)
+ ++..... . ...+.+++|||+ . ...|.+||++ +| ++.....++...+..++|
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 8 6654322 2 356788888884 1 1579999999 68 554444454567899999
Q ss_pred EccCCCeEEE-EeCCC--eEEEEECCCCcEEEEcccCCCc--------eEEEEEcCCCcEEEEEeCCeEEEE--eCCCce
Q 012410 269 IEQFNEKLLV-KQENE--NLQILDVRNAELMEVSRTEFMT--------PSAFIFLYENQLFLTFRNRTVAVW--NFRGEL 335 (464)
Q Consensus 269 ~~~~~~~lla-~s~D~--tIkIWDv~tg~~l~~l~gh~~~--------v~sv~FspdgqllaS~sD~TIklW--d~~Ge~ 335 (464)
+|+ +. +++ +..|+ +|.+||+.+|++.++..++... +.+++|+|++++++++++++++|| |..+..
T Consensus 250 spd-g~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 250 APD-GS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE 327 (662)
T ss_dssp CTT-SC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE
T ss_pred CCC-Ce-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc
Confidence 995 44 555 55777 6777787789988777665443 567999999999998877889999 665556
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEE--EEEecCCCccccccCCCC--eEEEEeCCCCeEEEEEccCC
Q 012410 336 VTSFEDHLLWHPDCNTNNIYITSDQDLI--ISYCKAEPEDQWMEGSAG--SINVSSILTGKCLAKINATN 401 (464)
Q Consensus 336 l~tl~gH~~~~~~~~v~svafSpDg~~L--aSgs~~~~~~~~~~s~Dg--tIklWdi~tG~cl~tl~gh~ 401 (464)
++.|..|... +.++. ++|++.+ ++++. +. +|.+||+.+|++......|.
T Consensus 328 ~~~l~~~~~~-----~~~~~-s~~~~~~~~~~~~~-----------~~~~~i~~~d~~~g~~~~l~~~~~ 380 (662)
T 3azo_A 328 LVDAAGPWTE-----WAATL-TVSGTRAVGVAASP-----------RTAYEVVELDTVTGRARTIGARHT 380 (662)
T ss_dssp EEECCSSCCE-----EEEEE-EEETTEEEEEEEET-----------TEEEEEEEEETTTCCEEEEESCCC
T ss_pred EEEecCCCCe-----EEEEE-ecCCCEEEEEEcCC-----------CCCCEEEEEECCCCceEEeecCCc
Confidence 8899988665 56661 4555543 33332 43 56666888888765445554
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=2.3e-18 Score=163.54 Aligned_cols=231 Identities=11% Similarity=0.211 Sum_probs=174.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee--eccccCceEEEEeCCCCcEEEEecC-
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE--SESLKWPGFVEFDDVNGKVLTYSAQ- 206 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~--~~~~~~~~~VaFs~pdGk~LaSgs~- 206 (464)
....+|+++|+|..+++ ...+ +.+.+|+.. |+....+.... ...+..|..++|++++|+++++...
T Consensus 30 ~~p~~v~~~~~g~l~v~----~~~~------~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVA----DTNN------HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp SCEEEEEECTTCCEEEE----EGGG------TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred CCCceEEECCCCCEEEE----ECCC------CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence 56899999999987766 2333 578888854 55432211100 1134567799996589988887744
Q ss_pred CCcEEEEeCCCCeEEEEec---CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEee--CCcceeeEEEEccCC
Q 012410 207 DSIYKVFDLKNYTMLYSIS---DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYH--LLHRNKKVDFIEQFN 273 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~--~~~~~~~V~F~~~~~ 273 (464)
++.|++|| .+|+.+.++. ...+..|+|.|+ .+..|.+||. +|+.+.++.. .......|+|.++
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~-- 174 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDK-- 174 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSS--
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCC--
Confidence 88999999 7888888775 246899999874 4568999996 5888888752 2345689999884
Q ss_pred CeEEEE-eCCCeEEEEECCCCcEEEEccc--CCCceEEEEEcCCCcEEEEEe-CC-eEEEEeCCCceEEEeccCCCCcCC
Q 012410 274 EKLLVK-QENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPD 348 (464)
Q Consensus 274 ~~lla~-s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv~FspdgqllaS~s-D~-TIklWd~~Ge~l~tl~gH~~~~~~ 348 (464)
+.++++ +.++.|++||. +|+.+..+.. +...|.+++|+|+|+++++.. ++ +|++||.+|+.+.++..|....
T Consensus 175 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~-- 251 (286)
T 1q7f_A 175 QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHA-- 251 (286)
T ss_dssp SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCS--
T ss_pred CCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCC--
Confidence 566665 57999999996 6777776654 357899999999999999998 75 9999999999999998775431
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
...+++|+|||+++++ +. |++|++|++...
T Consensus 252 -~~~~i~~~~~g~l~vs-~~-----------~~~v~v~~~~~~ 281 (286)
T 1q7f_A 252 -QCFDVALMDDGSVVLA-SK-----------DYRLYIYRYVQL 281 (286)
T ss_dssp -CEEEEEEETTTEEEEE-ET-----------TTEEEEEECSCC
T ss_pred -cceeEEECCCCcEEEE-CC-----------CCeEEEEEcccc
Confidence 1578999999999888 44 899999997543
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.83 E-value=5.9e-18 Score=164.05 Aligned_cols=255 Identities=11% Similarity=0.103 Sum_probs=177.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC-
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS- 208 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~- 208 (464)
..+.++.+ ||+.++.+....... .+-....+.+|++.+|+.. ++ ..+..++|| |||+.||+.+.+.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~-~~~~~~~l~~~d~~~~~~~---~l------~~~~~~~~S-pDg~~la~~~~~~~ 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLK-DNKYENTIVIENLKNNARR---FI------ENATMPRIS-PDGKKIAFMRANEE 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETT-TTEEEEEEEEEETTTCCEE---EE------ESCEEEEEC-TTSSEEEEEEEETT
T ss_pred EEcccceE--CCcEEEEEEeecCcc-cCCccceEEEEeCCCCceE---Ec------ccCCCeEEC-CCCCEEEEEEeccC
Confidence 44677777 899888754322110 1111267888898887642 22 234479998 9999999987653
Q ss_pred ----cEEEEeCCCCeEEEEec-CCCEeEEEEeCCC-----------------------------------ceeEEEEEcC
Q 012410 209 ----IYKVFDLKNYTMLYSIS-DKHVQEIKIRSSS-----------------------------------HVPLKILSIE 248 (464)
Q Consensus 209 ----tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~-----------------------------------d~tIklWdi~ 248 (464)
.|.+||+.+|+...... .. +..++|+|++ ...|.+||++
T Consensus 82 ~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred CCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 37788999988765433 33 8899998741 2569999999
Q ss_pred CCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC------C-eEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEE
Q 012410 249 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------E-NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 321 (464)
Q Consensus 249 tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D------~-tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~ 321 (464)
+|++++.+.. . .+..++|+|+ +.++++..+ . ..+||.+.+|++..... + ..+.++ ||||+.|+..
T Consensus 161 ~~~~~~~l~~-~-~~~~~~~spd--g~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~-~-~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 161 SEEVIEEFEK-P-RFSSGIWHRD--KIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFE-K-VSFYAV--DSDGERILLY 232 (347)
T ss_dssp TTEEEEEEEE-E-TTCEEEEETT--EEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEE-E-ESEEEE--EECSSCEEEE
T ss_pred CCeEEeeecC-C-CcccccCCCC--eEEEEEecccccccccccccEEEeCCCceEEecc-C-cceeeE--CCCCCEEEEE
Confidence 9998666665 2 6789999995 443445443 2 44555554776654433 3 445544 9999998877
Q ss_pred e-CC--------eEEEEeCCCceEEEeccCCCCcCCCCeeE-EEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 322 R-NR--------TVAVWNFRGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 322 s-D~--------TIklWd~~Ge~l~tl~gH~~~~~~~~v~s-vafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+ +. .|.+|| +|++...+.+|... +.+ ++|+ || ++++++. |++++|| +.+|
T Consensus 233 ~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~-----~~~~~~~s-dg-~~~~~~~-----------~~~~~l~-~~~g 292 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRG-----VGQAKIKD-GK-VYFTLFE-----------EGSVNLY-IWDG 292 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSE-----EEEEEEET-TE-EEEEEEE-----------TTEEEEE-EESS
T ss_pred EccccCCccccceEEEEC-CCceEeccccCCcc-----cCCccEEc-Cc-EEEEEec-----------CCcEEEE-EcCC
Confidence 7 43 688888 88877666666655 676 9999 99 9998886 8999999 8888
Q ss_pred eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE-Eecc
Q 012410 392 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV-HVWS 463 (464)
Q Consensus 392 ~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV-rlWd 463 (464)
++...+ .+.. .|.+++|+| ..+++++.+++. +||.
T Consensus 293 ~~~~~~-~~~~----------------------------------~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 293 EIKPIA-KGRH----------------------------------WIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp SEEEEE-CSSS----------------------------------EEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred ceEEEe-cCCC----------------------------------eEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 875544 3343 789999999 788888888775 7774
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=1.6e-18 Score=170.52 Aligned_cols=234 Identities=12% Similarity=0.127 Sum_probs=175.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCccc-----------------ceeeEEEEEeccCCCCCcccceeeccccCceEEE
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSL-----------------KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVE 192 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L-----------------~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~Va 192 (464)
..+.+|+++|+|+.+++.+ .+.-+.. .-.++.+||..+|++.. .+....+..|..|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~p~gia 97 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHR---GDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ---SSGKNLFYLPHGLS 97 (329)
T ss_dssp SCEEEEEECTTCCEEEEEC---TTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE---EECTTTCSSEEEEE
T ss_pred CCceEEEECCCCCEEEEeC---CCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe---ccCCCccCCceEEE
Confidence 3489999999999887733 2211100 00368899988888742 22223456788999
Q ss_pred EeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEec-----------CCCEeEEEEeC-C---------CceeEEEEEcCCC
Q 012410 193 FDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS-----------DKHVQEIKIRS-S---------SHVPLKILSIEDG 250 (464)
Q Consensus 193 Fs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~-----------~~~V~~Vafs~-s---------~d~tIklWdi~tG 250 (464)
|+ |+|+++++.+.+++|++||..... .+.++. -.....|+|+| + .+..|++|| .+|
T Consensus 98 ~d-~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 98 ID-TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp EC-TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred EC-CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 97 899999999999999999975432 566653 12588999987 2 367899999 679
Q ss_pred cEEEEEeeC----------CcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcc--cCCCceEEEEEcC----
Q 012410 251 TVLKVFYHL----------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR--TEFMTPSAFIFLY---- 313 (464)
Q Consensus 251 ~~l~tl~~~----------~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~Fsp---- 313 (464)
+.+.++... ......|+|.|+ ++.|+++ ..++.|++||..+|+++.++. ++...+.+++|+|
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEE
Confidence 999988521 123588999884 4566665 589999999999999999874 4566899999999
Q ss_pred --CCcEEEEEe-CCeEEEEeC-CCceEEEec---cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 314 --ENQLFLTFR-NRTVAVWNF-RGELVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 314 --dgqllaS~s-D~TIklWd~-~Ge~l~tl~---gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
+|+++++.+ +.+|++||. +|+++.++. +|..+ .+.|+|+|||.++++.+. +++|++|
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~-----p~~ia~~~dG~lyvad~~-----------~~~I~~~ 318 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDM-----PHDIVASEDGTVYIGDAH-----------TNTVWKF 318 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSS-----EEEEEECTTSEEEEEESS-----------SCCEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCC-----eeEEEECCCCCEEEEECC-----------CCEEEEE
Confidence 444444444 569999998 799999984 66665 789999999998888765 8999999
Q ss_pred eC
Q 012410 387 SI 388 (464)
Q Consensus 387 di 388 (464)
++
T Consensus 319 ~~ 320 (329)
T 3fvz_A 319 TL 320 (329)
T ss_dssp EE
T ss_pred eC
Confidence 96
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=2.9e-19 Score=175.51 Aligned_cols=232 Identities=11% Similarity=0.037 Sum_probs=156.8
Q ss_pred EEEeCCCCcEEEEecC-CCc--EEEEeCCCCeEEEEecC--CCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe
Q 012410 191 VEFDDVNGKVLTYSAQ-DSI--YKVFDLKNYTMLYSISD--KHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~-D~t--iKlWdl~tg~~l~tl~~--~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~ 257 (464)
++|| |||+.||+++. |++ |.+||+.+|+....... ..+..++|||+ .+..|.+||+++|+....+.
T Consensus 41 ~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 41 KCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred ccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence 7897 99999999988 664 88889999998765442 33446788885 35689999999999888776
Q ss_pred eCCcceeeEEEEccCCCeEEEE-----------------------eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVK-----------------------QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY- 313 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~-----------------------s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp- 313 (464)
.+...+....|....+++++++ +.+..|.+||+.+|+..... .+...+..++|||
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~ 198 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPY 198 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCC
Confidence 5444444444421122445542 24578999999999876554 4456788999999
Q ss_pred CCcEEEEEe-CC------eEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 314 ENQLFLTFR-NR------TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 314 dgqllaS~s-D~------TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
||+.||..+ +. .|.+||..|..++.+..+.... .+..++|||||+.|+..+... ...+.+|.+|
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~---~~~~~~~spdg~~l~~~~~~~------~~~~~~l~~~ 269 (388)
T 3pe7_A 199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGE---SCTHEFWVPDGSALVYVSYLK------GSPDRFIYSA 269 (388)
T ss_dssp EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTE---EEEEEEECTTSSCEEEEEEET------TCCCEEEEEE
T ss_pred CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCc---ccccceECCCCCEEEEEecCC------CCCcceEEEE
Confidence 999998877 32 6777777777677777665311 167889999999887765410 1112359999
Q ss_pred eCCCCeE--EEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEe---------eC
Q 012410 387 SILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG---------NR 455 (464)
Q Consensus 387 di~tG~c--l~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSg---------s~ 455 (464)
|+.+|+. +..+.++.. .. + ....++|||||+.||.. ..
T Consensus 270 d~~~g~~~~l~~~~~~~~----~~-------------------~--------~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 270 DPETLENRQLTSMPACSH----LM-------------------S--------NYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp CTTTCCEEEEEEECCEEE----EE-------------------E--------CTTSSEEEEEECCC------------CC
T ss_pred ecCCCceEEEEcCCCcee----ee-------------------e--------cCCCCeEccCCCcceeEeeeccccccCC
Confidence 9999984 444444211 00 0 01113789999998854 55
Q ss_pred CCcEEeccC
Q 012410 456 HGLVHVWSN 464 (464)
Q Consensus 456 DgtVrlWd~ 464 (464)
+..|.+||.
T Consensus 319 ~~~i~~~d~ 327 (388)
T 3pe7_A 319 DPFLYVFNM 327 (388)
T ss_dssp CCEEEEEET
T ss_pred CCEEEEEec
Confidence 678999973
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=1.5e-18 Score=184.04 Aligned_cols=276 Identities=8% Similarity=-0.016 Sum_probs=180.8
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccc----cCce-EEEEe-CCCCcE
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL----KWPG-FVEFD-DVNGKV 200 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~----~~~~-~VaFs-~pdGk~ 200 (464)
+|...+.+++|++++ ++-++.-...+ ....||....|.....+........ .+-+ .++|+ +|||+.
T Consensus 21 ~~~~~~~~~~~s~~~--~~~~~~~~~~~------~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 21 SRSGRPACVGAVGDE--VWWVAPRPAEA------GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp HTCSCCEEEEEETTE--EEEEEEETTTT------TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred hcCCccceeEEcCCe--EEEEecCcccC------CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCe
Confidence 467789999999754 44444322444 5788888643332111111110000 0001 35565 389998
Q ss_pred -EEEecC-CCcEEEEeCC--C-CeEEEEecC-------CCEeEEEEeCC--------Cc----------eeEEEEEcCC-
Q 012410 201 -LTYSAQ-DSIYKVFDLK--N-YTMLYSISD-------KHVQEIKIRSS--------SH----------VPLKILSIED- 249 (464)
Q Consensus 201 -LaSgs~-D~tiKlWdl~--t-g~~l~tl~~-------~~V~~Vafs~s--------~d----------~tIklWdi~t- 249 (464)
||+++. +..|.+||+. + ++ ...+.. ..+.+++|||+ .+ .+|.+||+.+
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 887665 4455555654 2 43 444432 35789999985 23 5799999998
Q ss_pred -----CcEEEEEe-eCCcceeeEEEEccCCCeEEEEeCC--------CeEEEEECC-CC---cEEEEcccCCCceEEEEE
Q 012410 250 -----GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVR-NA---ELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 250 -----G~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~D--------~tIkIWDv~-tg---~~l~~l~gh~~~v~sv~F 311 (464)
|++. .+. .+...+..++|+| ++.+|+..+.| .+|.+||+. +| ++.....+|...+.+++|
T Consensus 172 ~~~~~~~~~-~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 172 AAADRSAVR-ELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp TTTCGGGSE-ESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred ccccCCcee-EEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 6654 443 3335678899999 46667766644 489999999 68 666666777788999999
Q ss_pred cCCCcEEEEEe-CC--eEEEEeC-CCceEEEeccCCC-----CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 312 LYENQLFLTFR-NR--TVAVWNF-RGELVTSFEDHLL-----WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 312 spdgqllaS~s-D~--TIklWd~-~Ge~l~tl~gH~~-----~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
||||+++++++ |+ .|.+||. +|++.+.+.+|.. |.++ +.+++|+|||+++++++ . ++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~--~~~~~~~~~~~~~~~~~-----------~-~~ 315 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG--MRWFAPLANGLIAVVHG-----------K-GA 315 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT--CCSEEECTTSCEEEEEB-----------S-SS
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccccc--CceEeEeCCCEEEEEEE-----------c-Cc
Confidence 99999888888 88 5566666 5776655544432 3222 45799999999999875 3 78
Q ss_pred EEEE--eCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEE-EEcCCCCEEEEeeCCCcE
Q 012410 383 INVS--SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL-FYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 383 IklW--di~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl-afspDg~~LaSgs~DgtV 459 (464)
++|| |+.+|+ +++|..|.. .|.++ ++++++-.+++++.+...
T Consensus 316 ~~l~~~d~~~~~-~~~l~~~~~----------------------------------~~~~~~s~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 316 AVLGILDPESGE-LVDAAGPWT----------------------------------EWAATLTVSGTRAVGVAASPRTAY 360 (662)
T ss_dssp CEEEEEETTTTE-EEECCSSCC----------------------------------EEEEEEEEETTEEEEEEEETTEEE
T ss_pred cEEEEEECCCCc-EEEecCCCC----------------------------------eEEEEEecCCCEEEEEEcCCCCCC
Confidence 8999 765665 788887764 66666 565555556677777766
Q ss_pred Eec
Q 012410 460 HVW 462 (464)
Q Consensus 460 rlW 462 (464)
.||
T Consensus 361 ~i~ 363 (662)
T 3azo_A 361 EVV 363 (662)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=2.8e-18 Score=172.43 Aligned_cols=256 Identities=14% Similarity=0.103 Sum_probs=180.2
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----------CCCcEEEEeCCCCeEEEEec-----
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS----- 225 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs----------~D~tiKlWdl~tg~~l~tl~----- 225 (464)
.++.+||..+|+.....+. . ..| .++|| |||+.|..+. .|++|.+||+.+++.+.++.
T Consensus 31 ~~v~v~D~~t~~~~~~i~~---g--~~p-~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMVPT---A--FNG-HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp CEEEEEETTTCCEEEEEEC---C--EEE-EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred CeEEEEECCCCeEEEEecC---C--CCC-ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 6899999999987543221 1 235 89997 8999998876 36789999999999988775
Q ss_pred ---CCCEeEEEEeCC---------C-ceeEEEEEcCCCcEEEE-EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC
Q 012410 226 ---DKHVQEIKIRSS---------S-HVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 291 (464)
Q Consensus 226 ---~~~V~~Vafs~s---------~-d~tIklWdi~tG~~l~t-l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~ 291 (464)
......++|+|+ . +.+|.+||+++++.+.+ +.. .....+.+.|..+..+++.+.|+++.+|++.
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 135678999884 2 58999999999999988 653 2234466767433456667899999999987
Q ss_pred C-CcEEE------EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cc--eEEEec------cCCCCcCCCCeeEE
Q 012410 292 N-AELME------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFE------DHLLWHPDCNTNNI 354 (464)
Q Consensus 292 t-g~~l~------~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge--~l~tl~------gH~~~~~~~~v~sv 354 (464)
. |+... ++..+.. +..+.++|+|..++..+ +++|.+||+. ++ .+.++. .+..|.+.. ...+
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~~~ 259 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG-YNLV 259 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC-SSCE
T ss_pred CCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC-eeEE
Confidence 6 77662 2222322 23445689998888888 9999999994 33 223332 122232210 1238
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccccc
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 434 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (464)
+|+|||+.|..++.....+-.....+++|.+||+.|+++++++..+.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--------------------------------- 306 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--------------------------------- 306 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---------------------------------
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---------------------------------
Confidence 99999888876542000000000124689999999999999997763
Q ss_pred ccCEEEEEEcCCCCEEEEeeCCCcEEeccC
Q 012410 435 LEDITSLFYDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 435 l~~V~slafspDg~~LaSgs~DgtVrlWd~ 464 (464)
+++++|+|||+.||+++. ++|.|||.
T Consensus 307 ---p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 307 ---ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp ---CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred ---eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 467999999999999997 99999983
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.79 E-value=1.1e-16 Score=155.18 Aligned_cols=247 Identities=12% Similarity=0.119 Sum_probs=168.7
Q ss_pred CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecccc
Q 012410 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (464)
Q Consensus 107 ~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~ 186 (464)
.+.+.+|+..+|+.. .+ ..+.++.|||||+.|+.++.....+ ...+.++++.+|+.. ++.... .
T Consensus 42 ~~~l~~~d~~~~~~~-~l-----~~~~~~~~SpDg~~la~~~~~~~~~-----~~~l~~~~~~~g~~~---~l~~~~--~ 105 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI-----ENATMPRISPDGKKIAFMRANEEKK-----VSEIWVADLETLSSK---KILEAK--N 105 (347)
T ss_dssp EEEEEEEETTTCCEE-EE-----ESCEEEEECTTSSEEEEEEEETTTT-----EEEEEEEETTTTEEE---EEEEES--E
T ss_pred cceEEEEeCCCCceE-Ec-----ccCCCeEECCCCCEEEEEEeccCCC-----cceEEEEECCCCceE---EEEcCC--C
Confidence 557788887777643 33 3478899999999999977443111 145777787777653 233222 2
Q ss_pred CceEEEEeCCCCcEEEEecCC---------------------------CcEEEEeCCCCeEEEEecCCCEeEEEEeCC--
Q 012410 187 WPGFVEFDDVNGKVLTYSAQD---------------------------SIYKVFDLKNYTMLYSISDKHVQEIKIRSS-- 237 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs~D---------------------------~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s-- 237 (464)
+..++|+ |||+.|++++.+ ..|.+||+.+|+++..+....+..++|+|+
T Consensus 106 -~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg~ 183 (347)
T 2gop_A 106 -IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKI 183 (347)
T ss_dssp -EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTEE
T ss_pred -ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCeE
Confidence 5689997 899999988743 579999999998744332116677777764
Q ss_pred -----Cc------e-eEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC--------CeEEEEECCCCcEEE
Q 012410 238 -----SH------V-PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVRNAELME 297 (464)
Q Consensus 238 -----~d------~-tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D--------~tIkIWDv~tg~~l~ 297 (464)
.+ . ..+||.+.+|++. .+..+ ..+..+ +| ++.+|+..+.+ ..|.+|| +|++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 256 (347)
T 2gop_A 184 VVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG 256 (347)
T ss_dssp EEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred EEEEecccccccccccccEEEeCCCceE-EeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence 11 2 3455555566654 44432 334444 66 56677776533 4688888 888887
Q ss_pred EcccCCCceEE-EEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 298 VSRTEFMTPSA-FIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 298 ~l~gh~~~v~s-v~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
...+|...+.. ++|+ || ++++++ |++++|| + +|++...+. +... |.+++|+| .++++++.
T Consensus 257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~~~~-----v~~~~~s~--~~~~~~~~------ 319 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-GRHW-----IMGFDVDE--IVVYLKET------ 319 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-SSSE-----EEEEEESS--SEEEEEEC------
T ss_pred ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-CCCe-----EEeeeeeC--cEEEEEcC------
Confidence 77777778886 8999 99 888888 9999999 8 688755544 4444 88999999 77777764
Q ss_pred cccCCCCeE-EEEeCCCCeEEEEEccCCC
Q 012410 375 WMEGSAGSI-NVSSILTGKCLAKINATNC 402 (464)
Q Consensus 375 ~~~s~DgtI-klWdi~tG~cl~tl~gh~~ 402 (464)
+++. +||.+. |+ +..|..|+.
T Consensus 320 -----~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 320 -----ATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp -----SSSCCEEEEES-SS-EEECCCTTS
T ss_pred -----CCChHHheEeC-Cc-EEEeccccH
Confidence 4544 788776 76 556777764
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=3.5e-17 Score=177.27 Aligned_cols=226 Identities=10% Similarity=0.034 Sum_probs=165.0
Q ss_pred ceEEEEeCCCCcEEEEecCCC-----cEEEEeCCCCeEEE-EecCCCEeEEEEeCC--------Ccee------------
Q 012410 188 PGFVEFDDVNGKVLTYSAQDS-----IYKVFDLKNYTMLY-SISDKHVQEIKIRSS--------SHVP------------ 241 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~-----tiKlWdl~tg~~l~-tl~~~~V~~Vafs~s--------~d~t------------ 241 (464)
...++|| |||+.||+++.++ +|+|||+.+|+.+. ++....+.+++|+|+ .+.+
T Consensus 127 ~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 127 LRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 3479998 9999999876654 99999999999876 343334677888874 2233
Q ss_pred ----EEEEEcCCCcE--EEEEee--CCcceeeEEEEccCCCeEEEEeC-----CCeEEEEECCC------Cc-EEEEccc
Q 012410 242 ----LKILSIEDGTV--LKVFYH--LLHRNKKVDFIEQFNEKLLVKQE-----NENLQILDVRN------AE-LMEVSRT 301 (464)
Q Consensus 242 ----IklWdi~tG~~--l~tl~~--~~~~~~~V~F~~~~~~~lla~s~-----D~tIkIWDv~t------g~-~l~~l~g 301 (464)
|++|++.+|+. ...+.. +...+..++|+| ++.+|+..+. +..|.+||+.+ ++ .++.+..
T Consensus 206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 99999999872 222332 223457899998 4667776543 67899999987 64 4566666
Q ss_pred CCCceEEEEEcCCCcEEEEEe--CC---eEEEEeC-CCc--eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcc
Q 012410 302 EFMTPSAFIFLYENQLFLTFR--NR---TVAVWNF-RGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 373 (464)
Q Consensus 302 h~~~v~sv~FspdgqllaS~s--D~---TIklWd~-~Ge--~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~ 373 (464)
|...+.. .|+|||+.|+..+ ++ .|.+||+ +++ ..+++..|.... .+.+++|+|++.+++++..
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~lv~~~~~----- 355 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD---VLEWVACVRSNFLVLCYLH----- 355 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC---EEEEEEEETTTEEEEEEEE-----
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC---eEEEEEEEcCCEEEEEEEE-----
Confidence 7666665 4889988776655 32 6999999 454 356676675531 2788999999999999886
Q ss_pred ccccCCCCe--EEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 374 QWMEGSAGS--INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 374 ~~~~s~Dgt--IklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
|+. |.+||+.+|++++.|..+.. .|.+++++||++.|+
T Consensus 356 ------~g~~~l~~~~~~~g~~~~~l~~~~~----------------------------------~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 356 ------DVKNTLQLHDLATGALLKIFPLEVG----------------------------------SVVGYSGQKKDTEIF 395 (710)
T ss_dssp ------TTEEEEEEEETTTCCEEEEECCCSS----------------------------------EEEEEECCTTCSEEE
T ss_pred ------CCEEEEEEEECCCCCEEEecCCCCc----------------------------------eEEEEecCCCCCEEE
Confidence 764 66678779999999987754 788999999998877
Q ss_pred ----EeeCCCcEEeccC
Q 012410 452 ----TGNRHGLVHVWSN 464 (464)
Q Consensus 452 ----Sgs~DgtVrlWd~ 464 (464)
|....++|.+||.
T Consensus 396 ~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EEEECSSCCCEEEEEET
T ss_pred EEEeCCCCCCEEEEEEC
Confidence 3335678888873
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.77 E-value=8.2e-17 Score=154.18 Aligned_cols=218 Identities=12% Similarity=0.117 Sum_probs=163.1
Q ss_pred ccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEE
Q 012410 185 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~t 255 (464)
..++..++|+ |+|+ +++++..++.|.+||..++...+......+..|+|+|+ .+..|.+||.++|++...
T Consensus 27 ~~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 27 FTWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp CSSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred CccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 4566799998 8998 88889999999999999882222334567999999874 346899999999987654
Q ss_pred EeeC----CcceeeEEEEccCCCeEEEE-----e-------------CCCeEEEEECCCCcEEEEcccCCCceEEEEEcC
Q 012410 256 FYHL----LHRNKKVDFIEQFNEKLLVK-----Q-------------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 313 (464)
Q Consensus 256 l~~~----~~~~~~V~F~~~~~~~lla~-----s-------------~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp 313 (464)
+... ......++|.|+ +.++++ . ..+.|..+|.. |+. ..+..+...+..++|+|
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~ 181 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLP 181 (296)
T ss_dssp ECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECT
T ss_pred eeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECC
Confidence 4321 123467999884 566663 2 12355555544 554 44456677899999999
Q ss_pred CCcEEEEEe-CCeEEEEeC--CCce---EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 314 ENQLFLTFR-NRTVAVWNF--RGEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~--~Ge~---l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
||++|++.+ +++|.+||+ +|++ ...+..+... ...++++|||+++++. ++.|.+||
T Consensus 182 dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v~~-------------~~~v~~~~ 243 (296)
T 3e5z_A 182 SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK-----TDGLRVDAGGLIWASA-------------GDGVHVLT 243 (296)
T ss_dssp TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC-----CCSEEEBTTSCEEEEE-------------TTEEEEEC
T ss_pred CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC-----CCeEEECCCCCEEEEc-------------CCeEEEEC
Confidence 999997777 899999998 4777 4566333332 4579999999988875 57899999
Q ss_pred CCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEE-cCCCCEEEEeeCCCcEEe
Q 012410 388 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 388 i~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf-spDg~~LaSgs~DgtVrl 461 (464)
. .|+++.++..+. .+.+++| +||++.|+.++.++.+++
T Consensus 244 ~-~g~~~~~~~~~~-----------------------------------~~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 244 P-DGDELGRVLTPQ-----------------------------------TTSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp T-TSCEEEEEECSS-----------------------------------CCCEEEEESTTSCEEEEEETTEEEEE
T ss_pred C-CCCEEEEEECCC-----------------------------------CceeEEEECCCCCEEEEEcCCeEEEE
Confidence 7 599999997765 3678999 699999999999987765
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=2.7e-16 Score=152.15 Aligned_cols=261 Identities=9% Similarity=0.046 Sum_probs=173.1
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
+..++.+..++.++.| .++.+..+.. +...+.+++|+|+|+.+++ +..+ ..+.+|+..+|++..
T Consensus 17 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~----~~~~------~~i~~~d~~~~~~~~-- 80 (333)
T 2dg1_A 17 SNSAVPIISESELQTI---TAEPWLEISK-KGLQLEGLNFDRQGQLFLL----DVFE------GNIFKINPETKEIKR-- 80 (333)
T ss_dssp GGCSSCCCCGGGSCEE---ECEEEEEEES-SCCCEEEEEECTTSCEEEE----ETTT------CEEEEECTTTCCEEE--
T ss_pred ccceeEEeecccCccc---ccceeEEEec-cCccccCcEECCCCCEEEE----ECCC------CEEEEEeCCCCcEEE--
Confidence 4445555677788888 4666777744 5556899999999997666 3444 688999988877531
Q ss_pred cceeeccccCceEEEEeCCCCcEEEEecCC----CcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEE
Q 012410 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVL 253 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D----~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l 253 (464)
+.......|..++|+ |||++++++..+ +.|.+||.++++....+...
T Consensus 81 --~~~~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------------------- 131 (333)
T 2dg1_A 81 --PFVSHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-------------------------- 131 (333)
T ss_dssp --EEECSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--------------------------
T ss_pred --EeeCCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--------------------------
Confidence 111122456789997 899998887766 67888888776654222100
Q ss_pred EEEeeCCcceeeEEEEccCCCeEEEEeC-------CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CC
Q 012410 254 KVFYHLLHRNKKVDFIEQFNEKLLVKQE-------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NR 324 (464)
Q Consensus 254 ~tl~~~~~~~~~V~F~~~~~~~lla~s~-------D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~ 324 (464)
.....+..++|.|+ +.++++.. .+.|..+|..+++..... .+...+..++|+|||+ ++++.+ ++
T Consensus 132 ----~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~ 204 (333)
T 2dg1_A 132 ----STAYCIDDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTAN 204 (333)
T ss_dssp ----SSCCCEEEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred ----ccCCcccceEECCC--CCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCC
Confidence 00023345556553 44555432 245666666666655443 3345688999999998 556666 89
Q ss_pred eEEEEeC--CCceEEEe--------ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 325 TVAVWNF--RGELVTSF--------EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 325 TIklWd~--~Ge~l~tl--------~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
+|.+||. +|+.+..+ .+| .. +..++++|||+++++... ++.|.+||. +|+.+
T Consensus 205 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~-----~~~i~~d~~G~l~v~~~~-----------~~~v~~~d~-~g~~~ 266 (333)
T 2dg1_A 205 RLHRIALEDDGVTIQPFGATIPYYFTGH-EG-----PDSCCIDSDDNLYVAMYG-----------QGRVLVFNK-RGYPI 266 (333)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEEECCSS-SE-----EEEEEEBTTCCEEEEEET-----------TTEEEEECT-TSCEE
T ss_pred eEEEEEecCCCcCcccccceEEEecCCC-CC-----CCceEECCCCCEEEEEcC-----------CCEEEEECC-CCCEE
Confidence 9999998 46655432 233 12 578999999999988764 789999997 78888
Q ss_pred EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC
Q 012410 395 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 456 (464)
Q Consensus 395 ~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D 456 (464)
.++..+.. . .| .+..+.+++|+|||+.|+.++.+
T Consensus 267 ~~~~~~~~-~-------~g--------------------~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 267 GQILIPGR-D-------EG--------------------HMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTTG-G-------GT--------------------CSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEcCCC-c-------cc--------------------cccCcceEEECCCCCEEEEEeCc
Confidence 88854431 0 00 01147889999999888866655
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.77 E-value=4.3e-17 Score=176.43 Aligned_cols=243 Identities=10% Similarity=0.033 Sum_probs=175.2
Q ss_pred CCCceEEEEEEeeCCCEEEEEEee-cCCCCcccceeeEEEEEeccCCCC-CcccceeeccccCc--eEEEEeCCCCcEEE
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPD-SGFALFESESLKWP--GFVEFDDVNGKVLT 202 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~-~sddfs~L~~~ti~l~~i~~G~~~-~~~~l~~~~~~~~~--~~VaFs~pdGk~La 202 (464)
.|...+.++.|||||+.||.++.. ++++ .++++||+.+|+.. .. .+.+. ..++|+ |||+.|+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~------~~i~v~dl~tg~~~~~~-------~~~~~~~~~~~ws-pDg~~l~ 183 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADE------AVLHVIDVDSGEWSKVD-------VIEGGKYATPKWT-PDSKGFY 183 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSC------CEEEEEETTTCCBCSSC-------CBSCCTTCCCEEC-TTSSEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCce------EEEEEEECCCCCCcCCc-------ccCcccccceEEe-cCCCEEE
Confidence 355579999999999999865543 3445 79999999999864 11 11122 479998 8999999
Q ss_pred EecCCCc-------------EEEEeCCCCe----EEEEecC--CCEeEEEEeCCC------------ceeEEEEEcCCCc
Q 012410 203 YSAQDSI-------------YKVFDLKNYT----MLYSISD--KHVQEIKIRSSS------------HVPLKILSIEDGT 251 (464)
Q Consensus 203 Sgs~D~t-------------iKlWdl~tg~----~l~tl~~--~~V~~Vafs~s~------------d~tIklWdi~tG~ 251 (464)
+++.|.+ |++|++.+++ +++...+ ..+.+++|||++ ...|.+|+..+|+
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 9999887 9999999887 5555543 478899999841 2367777777776
Q ss_pred EEEEEeeCCcceeeEEEEccCCCeEEEEe----CCCeEEEEECCCCcE---EEEcccC-CCceEEEEEcCCCcEEEEEe-
Q 012410 252 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAEL---MEVSRTE-FMTPSAFIFLYENQLFLTFR- 322 (464)
Q Consensus 252 ~l~tl~~~~~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg~~---l~~l~gh-~~~v~sv~FspdgqllaS~s- 322 (464)
. +.+..+...+..+.+ + +++ +++.+ .++.|.+||+.+++. ..++.++ ...+.+++|+ +++++++.+
T Consensus 264 ~-~~l~~~~~~~~~~~~-~-~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~ 338 (695)
T 2bkl_A 264 F-RLLVKGVGAKYEVHA-W-KDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK 338 (695)
T ss_dssp C-EEEEECSSCCEEEEE-E-TTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred e-EEeecCCCceEEEEe-c-CCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence 4 444433344556666 4 344 66654 368999999988863 4444444 4567888998 889999999
Q ss_pred CCeEEEEeC--CCceEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 323 NRTVAVWNF--RGELVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 323 D~TIklWd~--~Ge~l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
|++.+||.+ +|++++.+..+ ... |..++++|||+.|+-...+ ....++|.+||+.+|+ +..|+.
T Consensus 339 dg~~~l~~~~~~g~~~~~l~~~~~~~-----v~~~~~s~d~~~l~~~~ss-------~~~P~~v~~~d~~~g~-~~~l~~ 405 (695)
T 2bkl_A 339 DATSEVRVATLKGKPVRTVQLPGVGA-----ASNLMGLEDLDDAYYVFTS-------FTTPRQIYKTSVSTGK-SELWAK 405 (695)
T ss_dssp TTEEEEEEEETTCCEEEECCCSSSSE-----ECCCBSCTTCSEEEEEEEE-------TTEEEEEEEEETTTCC-EEEEEE
T ss_pred CCEEEEEEEeCCCCeeEEecCCCCeE-----EEEeecCCCCCEEEEEEcC-------CCCCCEEEEEECCCCc-EEEEec
Confidence 999999976 58888888766 434 6778899999877733221 1236899999999988 456666
Q ss_pred CC
Q 012410 400 TN 401 (464)
Q Consensus 400 h~ 401 (464)
+.
T Consensus 406 ~~ 407 (695)
T 2bkl_A 406 VD 407 (695)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=9.7e-18 Score=163.93 Aligned_cols=226 Identities=11% Similarity=0.027 Sum_probs=152.4
Q ss_pred ceEEEEeCCCCcEEEEecCC---CcEEEEeCCCCeEEEEec-CCCEe-EEEEeCC--------CceeEEEEEcCCCcEEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQ-EIKIRSS--------SHVPLKILSIEDGTVLK 254 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D---~tiKlWdl~tg~~l~tl~-~~~V~-~Vafs~s--------~d~tIklWdi~tG~~l~ 254 (464)
+..++|| |||+.|++.+.+ ..|.+||+.+++...... ...+. .++|||+ .+..|.+||+.+|+...
T Consensus 38 ~~~~~~S-pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFT-QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eecCcCC-CCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 4478897 999999887553 478899999998654332 22222 3667774 33479999999999877
Q ss_pred EEeeCCcceee---E----------------EEEccCCCeEEEE-----eCCCeEEEEECCCCcEEEEcccCCCceEEEE
Q 012410 255 VFYHLLHRNKK---V----------------DFIEQFNEKLLVK-----QENENLQILDVRNAELMEVSRTEFMTPSAFI 310 (464)
Q Consensus 255 tl~~~~~~~~~---V----------------~F~~~~~~~lla~-----s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~ 310 (464)
.+..+...... + +|+| ++..++.. ..+..|.+||+.+|++.... .+...+..++
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~ 194 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI 194 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence 66633232211 2 2334 23333322 45678999999999987665 4556788999
Q ss_pred EcC-CCcEEEEEe-C------CeEEEEeCCCceEEEeccCC-CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 311 FLY-ENQLFLTFR-N------RTVAVWNFRGELVTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 311 Fsp-dgqllaS~s-D------~TIklWd~~Ge~l~tl~gH~-~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|+| ||+.|+..+ + ..|.+||+.|..++.+..+. .+ .+..++|||||+.|+..+... ...++
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~----~~~~~~~spdg~~l~~~~~~~------~~~~~ 264 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGE----SCTHEFWIPDGSAMAYVSYFK------GQTDR 264 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTE----EEEEEEECTTSSCEEEEEEET------TTCCE
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCc----cccceEECCCCCEEEEEecCC------CCccc
Confidence 999 898777665 3 46888898655555555543 22 267899999999888776410 01135
Q ss_pred eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEee------
Q 012410 382 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGN------ 454 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp-Dg~~LaSgs------ 454 (464)
+|.+||+.+|+..... ... ... ++|+| ||+.|++++
T Consensus 265 ~l~~~d~~~g~~~~l~-~~~-----------------------------------~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 265 VIYKANPETLENEEVM-VMP-----------------------------------PCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp EEEEECTTTCCEEEEE-ECC-----------------------------------SEE-EEEECSSSSEEEEEECCC---
T ss_pred eEEEEECCCCCeEEee-eCC-----------------------------------CCC-CCccCCCCceEEEecCCccee
Confidence 6999999999864432 111 222 89999 999999865
Q ss_pred ----------CCCcEEecc
Q 012410 455 ----------RHGLVHVWS 463 (464)
Q Consensus 455 ----------~DgtVrlWd 463 (464)
.+..|.+||
T Consensus 308 ~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLN 326 (396)
T ss_dssp -------CCCCCCEEEEEE
T ss_pred eccccccccCCCCcEEEEe
Confidence 347899987
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=3.9e-16 Score=169.12 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=178.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.+...+.++.|||||+.||.++..++.+ -.++++||+.+|+.... ... . .....++|+ |||+.|++++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~-----~~~i~v~d~~tg~~~~~--~~~-~--~~~~~~~ws-pDg~~l~~~~~ 190 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSD-----WVTIKFMKVDGAKELPD--VLE-R--VKFSCMAWT-HDGKGMFYNAY 190 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCS-----CEEEEEEETTTTEEEEE--EEE-E--ECSCCEEEC-TTSSEEEEEEC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCc-----eEEEEEEECCCCCCCcc--ccc-C--cccceEEEE-eCCCEEEEEEE
Confidence 3445689999999999999866443221 14899999999986421 111 1 113479998 89999999999
Q ss_pred CCc----------------EEEEeCCCCe----EEEEec--CCCEeEEEEeCCC-------------ceeEEEEEcCC--
Q 012410 207 DSI----------------YKVFDLKNYT----MLYSIS--DKHVQEIKIRSSS-------------HVPLKILSIED-- 249 (464)
Q Consensus 207 D~t----------------iKlWdl~tg~----~l~tl~--~~~V~~Vafs~s~-------------d~tIklWdi~t-- 249 (464)
|.+ |++|++.+++ +++... ...+.+++|||++ +..|.+||+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 887 9999999887 444443 2357788898841 56799999987
Q ss_pred ----Cc-EEEEEeeCCcceeeEEEEccCCCeEEEEeC----CCeEEEEECCCCc--EEEEcccCCC--ceEEEEEcCCCc
Q 012410 250 ----GT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNAE--LMEVSRTEFM--TPSAFIFLYENQ 316 (464)
Q Consensus 250 ----G~-~l~tl~~~~~~~~~V~F~~~~~~~lla~s~----D~tIkIWDv~tg~--~l~~l~gh~~--~v~sv~Fspdgq 316 (464)
|+ .++.+..+...+.. .|++ ++++++..+. +..|.+||+.+++ ..+.+..|.. .+.+++|++++.
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF 348 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred cccCCccceEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence 64 45666643333433 4667 4677777553 3479999999875 2344444543 678899999999
Q ss_pred EEEEEe-CCe--EEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 317 LFLTFR-NRT--VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 317 llaS~s-D~T--IklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
++++.+ |++ |.+||+ +|++++.+..|... |.+++++||++.|+-... +....++|.+||+.+|+
T Consensus 349 lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~-----v~~~~~s~d~~~l~~~~s-------s~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 349 LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS-----VVGYSGQKKDTEIFYQFT-------SFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECCCSSE-----EEEEECCTTCSEEEEEEE-------CSSCCCEEEEEETTSSS
T ss_pred EEEEEEECCEEEEEEEECCCCCEEEecCCCCce-----EEEEecCCCCCEEEEEEe-------CCCCCCEEEEEECCCCc
Confidence 999999 885 556687 79999999988554 788999999986653322 12346899999999999
Q ss_pred E-EEEEccCC
Q 012410 393 C-LAKINATN 401 (464)
Q Consensus 393 c-l~tl~gh~ 401 (464)
+ +..++.+.
T Consensus 417 ~~~~~l~~~~ 426 (710)
T 2xdw_A 417 LEPRVFREVT 426 (710)
T ss_dssp CCCEEEEECC
T ss_pred cceEEeeecc
Confidence 6 66666543
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=5.9e-16 Score=152.84 Aligned_cols=248 Identities=8% Similarity=0.027 Sum_probs=183.0
Q ss_pred eeEEEEEeccCCCCCcccce-eeccc-cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC
Q 012410 161 RSTKIEYIRRGKPDSGFALF-ESESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS 237 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~-~~~~~-~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s 237 (464)
.++.++|..+|+.......- ....+ ..|..++|+ ++++.++...+++|.+||.++++.+.++. ......|+|+++
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~ 94 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSD 94 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEET
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCC
Confidence 68888898888875432100 00112 224478885 67788888888999999999999999886 467899999663
Q ss_pred --------CceeEEEEEcCCCcEEEEEeeCC-----cceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccC
Q 012410 238 --------SHVPLKILSIEDGTVLKVFYHLL-----HRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~~~~-----~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh 302 (464)
.+..|.+||.++++++.++.-.. .....+++ +++++.++. .+++|.++|+.+++.+.++...
T Consensus 95 g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 95 EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 46899999999999998887321 14467777 357888875 4899999999999988876643
Q ss_pred CCceEEEEEcCCCcEEEEEe-C----------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC
Q 012410 303 FMTPSAFIFLYENQLFLTFR-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~s-D----------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~ 370 (464)
..+..++|+|||+++++.. + ++|.++|. +++++.++.-..... .+.++|+|||++|...
T Consensus 172 -~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~----p~~la~~~d~~~lyv~---- 242 (328)
T 3dsm_A 172 -IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDW----PSEVQLNGTRDTLYWI---- 242 (328)
T ss_dssp -SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCC----CEEEEECTTSCEEEEE----
T ss_pred -CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCC----ceeEEEecCCCEEEEE----
Confidence 3578899999999999887 6 79999999 699888776322211 5799999999999775
Q ss_pred CccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCE
Q 012410 371 PEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNE 449 (464)
Q Consensus 371 ~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp-Dg~~ 449 (464)
+++|.+||+.+|+....-.... .....+.++++| +|+.
T Consensus 243 ---------~~~v~~~d~~t~~~~~~~~~~~--------------------------------~~~~p~gi~vdp~~g~l 281 (328)
T 3dsm_A 243 ---------NNDIWRMPVEADRVPVRPFLEF--------------------------------RDTKYYGLTVNPNNGEV 281 (328)
T ss_dssp ---------SSSEEEEETTCSSCCSSCSBCC--------------------------------CSSCEEEEEECTTTCCE
T ss_pred ---------ccEEEEEECCCCceeeeeeecC--------------------------------CCCceEEEEEcCCCCeE
Confidence 4489999999888531100000 012678999999 5555
Q ss_pred EEEe----eCCCcEEecc
Q 012410 450 IYTG----NRHGLVHVWS 463 (464)
Q Consensus 450 LaSg----s~DgtVrlWd 463 (464)
.++. ..+++|.+||
T Consensus 282 yva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 282 YVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp EEEECTTSSSEEEEEEEC
T ss_pred EEEcccccccCCEEEEEC
Confidence 5665 6789999997
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=3.6e-17 Score=177.06 Aligned_cols=224 Identities=11% Similarity=0.040 Sum_probs=157.6
Q ss_pred ceEEEEeCCCCcEEE-----EecCCCcEEEEeCCCCeEE-E-EecCCCEeEEEEeCC--------Ccee-----------
Q 012410 188 PGFVEFDDVNGKVLT-----YSAQDSIYKVFDLKNYTML-Y-SISDKHVQEIKIRSS--------SHVP----------- 241 (464)
Q Consensus 188 ~~~VaFs~pdGk~La-----Sgs~D~tiKlWdl~tg~~l-~-tl~~~~V~~Vafs~s--------~d~t----------- 241 (464)
...++|| |||+.|| +|+.+.+|+|||+++|+.+ . .+......+++|+|+ .|.+
T Consensus 123 ~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~ 201 (695)
T 2bkl_A 123 LGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGY 201 (695)
T ss_dssp EEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred EEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence 4479998 9999999 5666789999999999975 2 222222267888874 3334
Q ss_pred --EEEEEcCCCc----EEEEEeeCCcceeeEEEEccCCCeEEEEeCCC----eEEEEECCCCcEEEEcccCCCceEEEEE
Q 012410 242 --LKILSIEDGT----VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE----NLQILDVRNAELMEVSRTEFMTPSAFIF 311 (464)
Q Consensus 242 --IklWdi~tG~----~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~----tIkIWDv~tg~~l~~l~gh~~~v~sv~F 311 (464)
|++|++.+|+ ++.....+...+..+.|+| ++..|++.+.++ .|.+||..+++... +..+...+...++
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~ 279 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAKYEVHA 279 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCCEEEEE
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCceEEEEe
Confidence 9999999987 3333323324668999999 467777766554 67777776776544 4445556677767
Q ss_pred cCCCcEEEEEe----CCeEEEEeC-CCce--EEEeccCC-CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 312 LYENQLFLTFR----NRTVAVWNF-RGEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 312 spdgqllaS~s----D~TIklWd~-~Ge~--l~tl~gH~-~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
|+|++++++. +++|.+||+ +|+. .+.+..|. .+ .+.+++|+ ++.+++++.. |++.
T Consensus 280 -~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~----~l~~~~~~-~~~lv~~~~~-----------dg~~ 342 (695)
T 2bkl_A 280 -WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSA----SLLSVSIV-GGHLSLEYLK-----------DATS 342 (695)
T ss_dssp -ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSC----EEEEEEEE-TTEEEEEEEE-----------TTEE
T ss_pred -cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCC----eEEEEEEE-CCEEEEEEEE-----------CCEE
Confidence 5666666554 379999999 5663 34444443 33 27889998 8889999887 8999
Q ss_pred EEEeCC-CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE----EeeCCCc
Q 012410 384 NVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY----TGNRHGL 458 (464)
Q Consensus 384 klWdi~-tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La----Sgs~Dgt 458 (464)
+||.+. +|++++.+..+.. ..|.+++++|||+.|+ |....++
T Consensus 343 ~l~~~~~~g~~~~~l~~~~~---------------------------------~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 343 EVRVATLKGKPVRTVQLPGV---------------------------------GAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEEEETTCCEEEECCCSSS---------------------------------SEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCeeEEecCCCC---------------------------------eEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 998664 6888888865521 0677789999999888 5566788
Q ss_pred EEeccC
Q 012410 459 VHVWSN 464 (464)
Q Consensus 459 VrlWd~ 464 (464)
|.+||.
T Consensus 390 v~~~d~ 395 (695)
T 2bkl_A 390 IYKTSV 395 (695)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999974
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.74 E-value=9.4e-16 Score=149.33 Aligned_cols=210 Identities=9% Similarity=0.043 Sum_probs=166.6
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCEeEEEEeCC------CceeEEEEEcCCCcEEEEEeeC-CcceeeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIRSS------SHVPLKILSIEDGTVLKVFYHL-LHRNKKV 266 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V~~Vafs~s------~d~tIklWdi~tG~~l~tl~~~-~~~~~~V 266 (464)
.|++|++++.|+.|.+||.++|+.+.++.. ..+.+++++|+ .+..|..||. +|+.+.++... ...+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 357999999999999999999999988874 36889999885 4578999999 89999999842 2466888
Q ss_pred EEEccCCCeEEEEeC-CCeEEEEECCCCcEEEEcc------cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEE
Q 012410 267 DFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSR------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS 338 (464)
Q Consensus 267 ~F~~~~~~~lla~s~-D~tIkIWDv~tg~~l~~l~------gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~t 338 (464)
.+.++ +..+++.+. ++.|..+| .+|+.+..+. ++...+..++++++|+++++.+ ++.|..||.+|+.+.+
T Consensus 83 ~~~~d-G~~lv~~~~~~~~v~~vd-~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~ 160 (276)
T 3no2_A 83 RILPD-GNALVAWCGHPSTILEVN-MKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNS 160 (276)
T ss_dssp EECTT-SCEEEEEESTTEEEEEEC-TTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred EECCC-CCEEEEecCCCCEEEEEe-CCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEE
Confidence 88873 445555555 78888888 4888776543 2334567788999999999999 9999999999999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcc
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 418 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~ 418 (464)
+..+. + ..++.+.|+|++|++++. ++.|..+|..||+.+.++..+.. +
T Consensus 161 ~~~~~-~-----~~~~~~~~~g~~~v~~~~-----------~~~v~~~d~~tG~~~w~~~~~~~-~-------------- 208 (276)
T 3no2_A 161 VKLSG-T-----PFSSAFLDNGDCLVACGD-----------AHCFVQLNLESNRIVRRVNANDI-E-------------- 208 (276)
T ss_dssp EECSS-C-----CCEEEECTTSCEEEECBT-----------TSEEEEECTTTCCEEEEEEGGGS-B--------------
T ss_pred EECCC-C-----ccceeEcCCCCEEEEeCC-----------CCeEEEEeCcCCcEEEEecCCCC-C--------------
Confidence 98763 2 457889999999998875 77999999999999999975431 0
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEee
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
+..|..+.+++..|+|+++++.+
T Consensus 209 -------------~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 209 -------------GVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp -------------SCCCSEEEEEEECTTSCEEEEEE
T ss_pred -------------CccccccccceEcCCCCEEEEec
Confidence 00123678888899999888873
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=2.8e-15 Score=143.54 Aligned_cols=224 Identities=8% Similarity=-0.052 Sum_probs=159.8
Q ss_pred cEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCC
Q 012410 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (464)
Q Consensus 119 ~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdG 198 (464)
..+..+. .+.....+++|+|+|+.|..++ ..+ ..+..|+..++ . ..+.. ....|..++|+ |||
T Consensus 18 ~~~~~l~-~~~~~~eg~~~d~~g~~l~~~~---~~~------~~i~~~~~~~~-~----~~~~~-~~~~~~~l~~~-~dg 80 (296)
T 3e5z_A 18 AEARRLA-DGFTWTEGPVYVPARSAVIFSD---VRQ------NRTWAWSDDGQ-L----SPEMH-PSHHQNGHCLN-KQG 80 (296)
T ss_dssp CCCEEEE-CCCSSEEEEEEEGGGTEEEEEE---GGG------TEEEEEETTSC-E----EEEES-SCSSEEEEEEC-TTC
T ss_pred CcEEEEe-cCCccccCCeEeCCCCEEEEEe---CCC------CEEEEEECCCC-e----EEEEC-CCCCcceeeEC-CCC
Confidence 3334442 2456688999999999444433 333 58888887665 2 22321 23456789997 899
Q ss_pred cEEEEecCCCcEEEEeCCCCeEEEEec------CCCEeEEEEeCCCceeE-----------------------EEEEcCC
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKIRSSSHVPL-----------------------KILSIED 249 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~l~tl~------~~~V~~Vafs~s~d~tI-----------------------klWdi~t 249 (464)
+++++...++.|.+||.++|++..... ...+.+|+++|+...-+ .||.+..
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 999988888999999999998754332 23567888887533222 5666543
Q ss_pred -CcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECC-CCcE---EEEcccCCCceEEEEEcCCCcEEEEEeCC
Q 012410 250 -GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAEL---MEVSRTEFMTPSAFIFLYENQLFLTFRNR 324 (464)
Q Consensus 250 -G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~-tg~~---l~~l~gh~~~v~sv~FspdgqllaS~sD~ 324 (464)
|+.. .+.........++|+|+ +..+++.+.++.|++||+. +|++ .+++..+...|..++|+++|+++++. ++
T Consensus 161 ~g~~~-~~~~~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~ 237 (296)
T 3e5z_A 161 DGTLS-APIRDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GD 237 (296)
T ss_dssp TSCEE-EEECCCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TT
T ss_pred CCCEE-EeecCCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CC
Confidence 5543 34433355688999884 5555445688999999997 6776 44554456678899999999999888 89
Q ss_pred eEEEEeCCCceEEEeccCCCCcCCCCeeEEEE-CCCCCEEEEEec
Q 012410 325 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCK 368 (464)
Q Consensus 325 TIklWd~~Ge~l~tl~gH~~~~~~~~v~svaf-SpDg~~LaSgs~ 368 (464)
.|.+||.+|+++..+..+.. +.+++| +|||+.|..++.
T Consensus 238 ~v~~~~~~g~~~~~~~~~~~------~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 238 GVHVLTPDGDELGRVLTPQT------TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp EEEEECTTSCEEEEEECSSC------CCEEEEESTTSCEEEEEET
T ss_pred eEEEECCCCCEEEEEECCCC------ceeEEEECCCCCEEEEEcC
Confidence 99999999999999988765 357899 799998888764
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=7.5e-14 Score=131.02 Aligned_cols=260 Identities=10% Similarity=0.062 Sum_probs=185.2
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccccee-eccccCceEEEEeCCCCcEEEEecC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~-~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
+...++++++.++|..+++ ...+ ..+..++.. |+.. .+. ......|..++++ ++|.++++...
T Consensus 13 ~~~~~~~i~~d~~g~l~v~----~~~~------~~v~~~d~~-~~~~----~~~~~~~~~~~~~i~~~-~~g~l~v~~~~ 76 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWIT----QHKA------NMISCINLD-GKIT----EYPLPTPDAKVMCLTIS-SDGEVWFTENA 76 (299)
T ss_dssp SSCCEEEEEECTTSCEEEE----ETTT------TEEEEECTT-CCEE----EEECSSTTCCEEEEEEC-TTSCEEEEETT
T ss_pred cCCCccceEECCCCCEEEE----ecCC------CcEEEEcCC-CCeE----EecCCcccCceeeEEEC-CCCCEEEeCCC
Confidence 4567999999999997776 2222 467777755 5542 111 0112456689997 89999998877
Q ss_pred CCcEEEEeCCCCeEE-EEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCC
Q 012410 207 DSIYKVFDLKNYTML-YSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 207 D~tiKlWdl~tg~~l-~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~ 274 (464)
++.|..||.+ ++.. ..+. ...+..|++.|+ .+..|..||. +|+...... ........+++.++ +
T Consensus 77 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~--g 152 (299)
T 2z2n_A 77 ANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD--N 152 (299)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT--S
T ss_pred CCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC--C
Confidence 8899999986 5542 3333 457899999873 3457888888 777654322 22345688888764 5
Q ss_pred eEEEEe-CCCeEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEE-eccCCCCcCCCC
Q 012410 275 KLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCN 350 (464)
Q Consensus 275 ~lla~s-~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~t-l~gH~~~~~~~~ 350 (464)
.+.++. .++.|..||. +|+.... +..+...+.++++.|+|+++++.. ++.|.+||.+|+.... +..+...
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~----- 226 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNAR----- 226 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCC-----
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCC-----
Confidence 666654 6789999998 8887664 445566799999999999999887 8999999998775432 3333333
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc--cCCCCCCcccccCCCCCCcccccccccccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN--ATNCSPKVDDELGSSSTGKSKKLNKSSYIR 428 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~--gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (464)
+.+++++|+|++.++... ++.|..||. +|+. ..+. ++..
T Consensus 227 ~~~i~~~~~g~l~v~~~~-----------~~~i~~~d~-~g~~-~~~~~~~~~~-------------------------- 267 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTEWG-----------ANKIGRLTS-NNII-EEYPIQIKSA-------------------------- 267 (299)
T ss_dssp EEEEEECSTTCEEEEETT-----------TTEEEEEET-TTEE-EEEECSSSSC--------------------------
T ss_pred ceeEEECCCCCEEEeccC-----------CceEEEECC-CCce-EEEeCCCCCC--------------------------
Confidence 789999999998887643 789999998 6763 3332 2221
Q ss_pred ccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 429 STVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 429 ~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.+.++++ ++|+..++.+.++.+++
T Consensus 268 --------~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 268 --------EPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp --------CEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred --------ccceEEe-cCCCEEEEecCCcEEEE
Confidence 7899999 99998888776766665
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=3e-14 Score=153.37 Aligned_cols=312 Identities=12% Similarity=0.067 Sum_probs=212.6
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEec--cCCCCC
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDS 175 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~--~G~~~~ 175 (464)
+-++.+...++.+.++|..+++.+..+..+. .+..+.|||||+.+.+++ .+ ..+.++|+. +++...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~----~d------g~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIG----RD------GKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEE----TT------SEEEEEETTSSSCCEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEc----CC------CeEEEEECCCCCCcEeE
Confidence 3456666778999999999999999985532 467999999999998844 33 489999985 666543
Q ss_pred cccceeeccccCceEEEEeC---CCCcEEEEecC-CCcEEEEeCCCCeEEEEecCC-------------CEeEEEEeCC-
Q 012410 176 GFALFESESLKWPGFVEFDD---VNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDK-------------HVQEIKIRSS- 237 (464)
Q Consensus 176 ~~~l~~~~~~~~~~~VaFs~---pdGk~LaSgs~-D~tiKlWdl~tg~~l~tl~~~-------------~V~~Vafs~s- 237 (464)
..+ .-..|..++||+ |||++|..+.. +++|.|+|..|.+.+.++... .|..|.+|+.
T Consensus 235 ~i~-----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 235 EIK-----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp EEE-----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred EEe-----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 221 113466899975 69998876655 599999999999999887621 5677777763
Q ss_pred --------CceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEccc-----C
Q 012410 238 --------SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRT-----E 302 (464)
Q Consensus 238 --------~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~g-----h 302 (464)
..+.|.++|.++.+.++.-. ........+.|.| ++.+++++. .+++|.++|+.+++++..... |
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph 388 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH 388 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC
Confidence 45677788877665444322 1223346778888 466777754 789999999999998876543 3
Q ss_pred CCceEEEEEcCC-CcEEEEEe--CCeEEEEeC-C-------CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 012410 303 FMTPSAFIFLYE-NQLFLTFR--NRTVAVWNF-R-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 371 (464)
Q Consensus 303 ~~~v~sv~Fspd-gqllaS~s--D~TIklWd~-~-------Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~ 371 (464)
...-..+ |.|+ |.+++++. +++|.++|. . .+.++++...... -.-|.++||+++|.....-.|
T Consensus 389 pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-----~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 389 PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-----SLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCSEEEEECTTCS
T ss_pred Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-----CEEEEeCCCCCeEEEecCCCC
Confidence 2212222 6787 66777775 799999998 4 4678888865322 123778999999887542111
Q ss_pred ccccccCCCCeEEEEeCCCC------eEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcC
Q 012410 372 EDQWMEGSAGSINVSSILTG------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 445 (464)
Q Consensus 372 ~~~~~~s~DgtIklWdi~tG------~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafsp 445 (464)
|.. -.++|-++|+.+. +++..+.- .-|+..++.-+.++.+.|+|
T Consensus 463 ~~~----~~~~v~v~d~~~~~~~g~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 463 EAE----ISGSVAVFDIKAMTGDGSDPEFKTLPI--------------------------AEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp SHH----HHTCEEEEEGGGCCCSSSCCCEEEECH--------------------------HHHHTCCSSCCEEEEEEECT
T ss_pred Ccc----cCceEEEEECCcccccccCCCcEEecc--------------------------ccccccCCCCcceEeeeECC
Confidence 100 0369999999876 23334320 00111222223789999999
Q ss_pred CCCEEEEee-----CCCcEEecc
Q 012410 446 ERNEIYTGN-----RHGLVHVWS 463 (464)
Q Consensus 446 Dg~~LaSgs-----~DgtVrlWd 463 (464)
||++|+.+. .++.|-|.|
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCEEEEEeecCCCCCCcEEEEE
Confidence 999988763 368887766
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=1.2e-14 Score=143.41 Aligned_cols=262 Identities=10% Similarity=0.015 Sum_probs=187.1
Q ss_pred hccCCeEEeeecccccEeeEe----ec-CCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 104 LAHSGVCAAFSRETNRRICFL----NV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 104 l~~~g~~~~~~~~~g~~l~~l----n~-~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
...++.+..+|..+++...++ |. ......+++.+. ++ .|.++. ..+ .++.++|..+|+....++
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~-~lyv~~---~~~------~~v~viD~~t~~~~~~i~ 81 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DG-IGWIVV---NNS------HVIFAIDINTFKEVGRIT 81 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TT-EEEEEE---GGG------TEEEEEETTTCCEEEEEE
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CC-EEEEEE---cCC------CEEEEEECcccEEEEEcC
Confidence 345789999999999977765 21 122456888874 34 444433 223 589999999999755432
Q ss_pred ceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CC------CEeEEEEeC-------C-CceeEE
Q 012410 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK------HVQEIKIRS-------S-SHVPLK 243 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~------~V~~Vafs~-------s-~d~tIk 243 (464)
....|..++|+ +||++.++...+++|.+||+++++.+.++. .. ....|++.. . .+.+|.
T Consensus 82 -----~~~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 82 -----GFTSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRIL 155 (328)
T ss_dssp -----CCSSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEE
T ss_pred -----CCCCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEE
Confidence 23678899997 789887777689999999999999987776 33 566777632 1 377999
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CC----------CeEEEEECCCCcEEEEcccC-CCceEEEEE
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN----------ENLQILDVRNAELMEVSRTE-FMTPSAFIF 311 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D----------~tIkIWDv~tg~~l~~l~gh-~~~v~sv~F 311 (464)
++|+++|++++++... .....++|.++ ++++++. .+ +.|.++|..+++.++++.-. ...+..++|
T Consensus 156 viD~~t~~~~~~i~~g-~~p~~i~~~~d--G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 156 KIDTETDKVVDELTIG-IQPTSLVMDKY--NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEETTTTEEEEEEECS-SCBCCCEECTT--SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred EEECCCCeEEEEEEcC-CCccceEEcCC--CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 9999999999988732 23367888774 6677654 33 79999999999988765432 247999999
Q ss_pred cCCCcEEEEEeCCeEEEEeC-CCceEE--EeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 312 LYENQLFLTFRNRTVAVWNF-RGELVT--SFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 312 spdgqllaS~sD~TIklWd~-~Ge~l~--tl~gH~~~~~~~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+||++.|..+. ++|.+||. +|++.. .+..+... .+.++++| +|.+.++...+ -..+++|.+||
T Consensus 233 ~~d~~~lyv~~-~~v~~~d~~t~~~~~~~~~~~~~~~-----p~gi~vdp~~g~lyva~~~~-------y~~~~~V~v~d 299 (328)
T 3dsm_A 233 NGTRDTLYWIN-NDIWRMPVEADRVPVRPFLEFRDTK-----YYGLTVNPNNGEVYVADAID-------YQQQGIVYRYS 299 (328)
T ss_dssp CTTSCEEEEES-SSEEEEETTCSSCCSSCSBCCCSSC-----EEEEEECTTTCCEEEEECTT-------SSSEEEEEEEC
T ss_pred ecCCCEEEEEc-cEEEEEECCCCceeeeeeecCCCCc-----eEEEEEcCCCCeEEEEcccc-------cccCCEEEEEC
Confidence 99988876654 49999999 577642 12221122 57899999 67777775110 01279999999
Q ss_pred CCCCeEEEEEcc
Q 012410 388 ILTGKCLAKINA 399 (464)
Q Consensus 388 i~tG~cl~tl~g 399 (464)
.. |+.++++..
T Consensus 300 ~~-g~~~~~i~~ 310 (328)
T 3dsm_A 300 PQ-GKLIDEFYV 310 (328)
T ss_dssp TT-CCEEEEEEE
T ss_pred CC-CCEEEEEEe
Confidence 86 999999864
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=3.2e-15 Score=139.66 Aligned_cols=223 Identities=11% Similarity=0.005 Sum_probs=158.8
Q ss_pred CceEEEEeCCCCcEEE-EecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEE
Q 012410 187 WPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 187 ~~~~VaFs~pdGk~La-Sgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl 256 (464)
.|..++|+ ++|++++ +.+.++.|.+||..++....... ...+..|++.++ .++.|.+||..++.. ..+
T Consensus 25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-EEC
T ss_pred CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE-eee
Confidence 67799997 8999888 66788999999987655432111 246788898764 256788898875543 333
Q ss_pred e-eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCC
Q 012410 257 Y-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG 333 (464)
Q Consensus 257 ~-~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~G 333 (464)
. ........+++.++ +.+.++ ..++.|.+||..+.........+...+..++++|+|+++++.. ++.|.+||..+
T Consensus 103 ~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred ecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 3 22245688998773 556665 5788999998777665544444556789999999999999988 89999999965
Q ss_pred c-eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCC
Q 012410 334 E-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGS 412 (464)
Q Consensus 334 e-~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~ 412 (464)
. .......+... ...|+++|||.+.++... ++.|.+||..+.........+
T Consensus 181 ~~~~~~~~~~~~~-----p~~i~~d~~g~l~v~~~~-----------~~~v~~~~~~~~~~~~~~~~~------------ 232 (270)
T 1rwi_B 181 NNQVVLPFTDITA-----PWGIAVDEAGTVYVTEHN-----------TNQVVKLLAGSTTSTVLPFTG------------ 232 (270)
T ss_dssp CCEEECCCSSCCS-----EEEEEECTTCCEEEEETT-----------TSCEEEECTTCSCCEECCCCS------------
T ss_pred CceEeecccCCCC-----ceEEEECCCCCEEEEECC-----------CCcEEEEcCCCCcceeeccCC------------
Confidence 4 33333333333 689999999998888754 789999998655433211111
Q ss_pred CCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 413 SSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+..+.+++++|||+.+++.+.+++|++++
T Consensus 233 ----------------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 233 ----------------------LNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp ----------------------CSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ----------------------CCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 12789999999999999999999999986
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.69 E-value=1.1e-15 Score=166.73 Aligned_cols=223 Identities=11% Similarity=0.071 Sum_probs=153.6
Q ss_pred ceEEEEeCCCCcEEEEecCC-----CcEEEEeCCCCeEEEE-ecCCCEeEEEEeCC-------C--------------ce
Q 012410 188 PGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTMLYS-ISDKHVQEIKIRSS-------S--------------HV 240 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D-----~tiKlWdl~tg~~l~t-l~~~~V~~Vafs~s-------~--------------d~ 240 (464)
...++|| |||+.||+++.+ .+|++||+++|+.+.. +....+.+++|+|+ . ..
T Consensus 165 ~~~~~~S-PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 165 LDAWAAS-DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEEEEEC-TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred EEeEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence 3479998 999999998765 5799999999998652 22111234555543 1 22
Q ss_pred eEEEEEcCCCcE--EEEEeeCCc--ceeeEEEEccCCCeEEEEeCC-----CeEEEEECCCC--cEEEEcccCCCceEEE
Q 012410 241 PLKILSIEDGTV--LKVFYHLLH--RNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNA--ELMEVSRTEFMTPSAF 309 (464)
Q Consensus 241 tIklWdi~tG~~--l~tl~~~~~--~~~~V~F~~~~~~~lla~s~D-----~tIkIWDv~tg--~~l~~l~gh~~~v~sv 309 (464)
.|++|++.+++. ...+....+ .+..+.|+| ++..|++.+.+ ..|.+||+.++ ++.+.+..+...+...
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF 322 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence 489999988862 223332222 468899988 45667776543 48999999988 5245555565556665
Q ss_pred EEcCCCcEEEEEe-CC----eEEEEeCC-C--ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 310 IFLYENQLFLTFR-NR----TVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 310 ~FspdgqllaS~s-D~----TIklWd~~-G--e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
+ +|||+.|+..+ ++ .|.+||+. + +....+.++... +.+++++ ++.+++++.. |+
T Consensus 323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~-----l~~~~~~-~~~lv~~~~~-----------dg 384 (741)
T 1yr2_A 323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN-----LESVGIA-GNRLFASYIH-----------DA 384 (741)
T ss_dssp E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE-----EEEEEEE-BTEEEEEEEE-----------TT
T ss_pred E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe-----EEEEEEE-CCEEEEEEEE-----------CC
Confidence 4 48888887766 33 49999994 4 344444444332 6778887 7788888886 88
Q ss_pred eEEEEeCC-CCeEEEEEccC-CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE----EeeC
Q 012410 382 SINVSSIL-TGKCLAKINAT-NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY----TGNR 455 (464)
Q Consensus 382 tIklWdi~-tG~cl~tl~gh-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La----Sgs~ 455 (464)
+.+||.+. +|++++.+..+ .. .|..++++||++.|+ |...
T Consensus 385 ~~~l~~~~~~g~~~~~l~~~~~~----------------------------------~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 385 KSQVLAFDLDGKPAGAVSLPGIG----------------------------------SASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp EEEEEEEETTSCEEEECBCSSSC----------------------------------EEEEEECCBTCSCEEEEEEETTE
T ss_pred EEEEEEEeCCCCceeeccCCCCe----------------------------------EEEEeecCCCCCEEEEEEcCCCC
Confidence 88888654 68888887643 22 688899999999887 5556
Q ss_pred CCcEEeccC
Q 012410 456 HGLVHVWSN 464 (464)
Q Consensus 456 DgtVrlWd~ 464 (464)
.++|.+||.
T Consensus 431 P~~i~~~d~ 439 (741)
T 1yr2_A 431 PATVLALDP 439 (741)
T ss_dssp EEEEEEEET
T ss_pred CCEEEEEEC
Confidence 788999873
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=2.3e-15 Score=145.64 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=157.6
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHL 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~ 259 (464)
+++|+ |++..+++.+.++++++| .++.+..+. ...+.+++|+|+ .++.|.+||.++|++...+...
T Consensus 10 ~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 85 (333)
T 2dg1_A 10 TLFYS-GKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH 85 (333)
T ss_dssp BCCSC-GGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS
T ss_pred eeeec-CCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC
Confidence 67886 788888888889999999 466666665 356788888763 4568999999999877655333
Q ss_pred CcceeeEEEEccCCCeEEEEe-CC----CeEEEEECCCCcEEEEcc--cCCCceEEEEEcCCCcEEEEEeC-------Ce
Q 012410 260 LHRNKKVDFIEQFNEKLLVKQ-EN----ENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFRN-------RT 325 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla~s-~D----~tIkIWDv~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~sD-------~T 325 (464)
...+..++|.++ ++++++. .+ +.|.+||..+++....+. .+...+..++|+|+|+++++... +.
T Consensus 86 ~~~~~~i~~~~d--g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 86 KANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp SSSEEEEEECTT--SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCcceEEECCC--CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 356789999874 5666654 55 699999999988765443 34567999999999999998762 34
Q ss_pred EEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCC-CeEEEEEccCCCC
Q 012410 326 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCS 403 (464)
Q Consensus 326 IklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L-aSgs~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gh~~~ 403 (464)
|-.+|..+..+..+..+... .+.++|+|||++| ++.+. ++.|.+||+.+ |+.+..+.....
T Consensus 164 l~~~~~~~~~~~~~~~~~~~-----~~~i~~~~dg~~l~v~~~~-----------~~~i~~~d~~~~g~~~~~~~~~~~- 226 (333)
T 2dg1_A 164 VYYVSPDFRTVTPIIQNISV-----ANGIALSTDEKVLWVTETT-----------ANRLHRIALEDDGVTIQPFGATIP- 226 (333)
T ss_dssp EEEECTTSCCEEEEEEEESS-----EEEEEECTTSSEEEEEEGG-----------GTEEEEEEECTTSSSEEEEEEEEE-
T ss_pred EEEEeCCCCEEEEeecCCCc-----ccceEECCCCCEEEEEeCC-----------CCeEEEEEecCCCcCcccccceEE-
Confidence 44445544333344443333 6799999999965 44433 78999999864 555443311000
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
... .....+..++++|||+.+++...++.|.+||
T Consensus 227 ---~~~-----------------------~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 227 ---YYF-----------------------TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN 260 (333)
T ss_dssp ---EEC-----------------------CSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred ---Eec-----------------------CCCCCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence 000 0001567899999999988888899999997
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.68 E-value=8.3e-15 Score=159.88 Aligned_cols=243 Identities=11% Similarity=0.046 Sum_probs=171.3
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
+...+.++.|||||+.||.++..++.+ -.++++||+.+|+... ....+. ....++|+ || +.|++++.|
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e-----~~~i~v~dl~tg~~~~---~~~~~~--~~~~~~ws-pD-~~l~~~~~~ 228 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSD-----WRTVKFVGVADGKPLA---DELKWV--KFSGLAWL-GN-DALLYSRFA 228 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCS-----EEEEEEEETTTCCEEE---EEEEEE--ESCCCEES-TT-SEEEEEECC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCc-----eEEEEEEECCCCCCCC---ccCCCc--eeccEEEE-CC-CEEEEEEec
Confidence 344789999999999999877553332 1589999999998742 111111 11378997 89 999999887
Q ss_pred Cc--------------EEEEeCCCCe----EEEEecCC--CEeEEEEeCCC-------------ceeEEEEEcCCC--cE
Q 012410 208 SI--------------YKVFDLKNYT----MLYSISDK--HVQEIKIRSSS-------------HVPLKILSIEDG--TV 252 (464)
Q Consensus 208 ~t--------------iKlWdl~tg~----~l~tl~~~--~V~~Vafs~s~-------------d~tIklWdi~tG--~~ 252 (464)
.+ |++|++.+++ +++...++ .+.++.|||++ ...|.+||+++| ++
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 75 8999998876 44444432 58889998841 347999999988 43
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEeC----CCeEEEEECCCC--cEEEEcccCCCceEEEEEcCCCcEEEEEe-CCe
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNA--ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 325 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s~----D~tIkIWDv~tg--~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~T 325 (464)
++.+......+..+.+ + +++.|+..+. +..|.+||+.++ +...++.++...+.+++|+ +++++++.+ |++
T Consensus 309 ~~~l~~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 309 VTALIPDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp CEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred cEEecCCCCceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 5666533233444433 5 5678877664 456999999885 5566666666667788887 778899988 999
Q ss_pred EEEEeC--CCceEEEeccC-CCCcCCCCeeEEEECCCCCEEE-EEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 326 VAVWNF--RGELVTSFEDH-LLWHPDCNTNNIYITSDQDLII-SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 326 IklWd~--~Ge~l~tl~gH-~~~~~~~~v~svafSpDg~~La-Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.+||.+ +|++++.+..+ ... |..++++||++.|+ +++. ....++|.+||+.+|+ +..|+.
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~~~~-----v~~~~~s~d~~~l~~~~ss--------~~~P~~i~~~d~~tg~-~~~l~~ 449 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPGIGS-----ASGLSGRPGDRHAYLSFSS--------FTQPATVLALDPATAK-TTPWEP 449 (741)
T ss_dssp EEEEEEETTSCEEEECBCSSSCE-----EEEEECCBTCSCEEEEEEE--------TTEEEEEEEEETTTTE-EEECSC
T ss_pred EEEEEEeCCCCceeeccCCCCeE-----EEEeecCCCCCEEEEEEcC--------CCCCCEEEEEECCCCc-EEEEec
Confidence 888865 58888888754 333 78899999998665 3331 1236899999999998 556654
No 195
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.68 E-value=1.9e-14 Score=147.81 Aligned_cols=245 Identities=13% Similarity=0.149 Sum_probs=176.0
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEeEEEEeCCC--------c--eeEEEEEcCCCcE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIRSSS--------H--VPLKILSIEDGTV 252 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~~Vafs~s~--------d--~tIklWdi~tG~~ 252 (464)
.+..|..|+|+ |+|+++++...++.|++||++++++...+.. .... ++|+|+. + ..|.+++..++..
T Consensus 129 ~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 129 KFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred ccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 35678899997 8999999988889999999999888765543 3334 8887642 1 2788888887776
Q ss_pred EEEE----eeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE----cccCCCc-eE-EEEEcC-CCcEEEEE
Q 012410 253 LKVF----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV----SRTEFMT-PS-AFIFLY-ENQLFLTF 321 (464)
Q Consensus 253 l~tl----~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~----l~gh~~~-v~-sv~Fsp-dgqllaS~ 321 (464)
+..+ .........++|.|. ++.|++...++.|..||..+++.... ..++... |. .++|+| +|.++++-
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~-~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDET-EEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTT-SSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCC-CCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 6666 213355688999883 57788877789999999998875444 3333322 35 999999 68888888
Q ss_pred e-CCeEEEEeCCCceEEEeccCC---CCcC-------CCCeeEEEECCCCCEEEEEe-cCCCccccccCCCCeEEEEeCC
Q 012410 322 R-NRTVAVWNFRGELVTSFEDHL---LWHP-------DCNTNNIYITSDQDLIISYC-KAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 322 s-D~TIklWd~~Ge~l~tl~gH~---~~~~-------~~~v~svafSpDg~~LaSgs-~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+ +++|..||.+|+ +.++.|+. .+.. -..-+.++|+|||+++++-+ . .++|+.||+.
T Consensus 286 ~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----------~~~I~~~~~~ 353 (409)
T 3hrp_A 286 QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----------GYCLRKLDIL 353 (409)
T ss_dssp TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----------TCEEEEEETT
T ss_pred CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----------CCEEEEEECC
Confidence 8 999999999888 55666664 0000 00157899999999888865 4 7899999988
Q ss_pred CCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 390 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 390 tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+|+ +.++.|+... .+.. +| ......+...+.|+++|||+.+++-..++.|+..+
T Consensus 354 ~G~-v~~~~g~~~~-~g~~---~g---------------~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 354 DGY-VSTVAGQVDV-ASQI---DG---------------TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp TTE-EEEEEECTTC-BSCC---CB---------------STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCE-EEEEeCCCCC-CCcC---CC---------------ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 887 5666676320 0000 00 00112245789999999999999999999998754
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.65 E-value=6.8e-14 Score=133.22 Aligned_cols=223 Identities=12% Similarity=0.142 Sum_probs=163.5
Q ss_pred ccCceEEEEeCCCCcEEEE-------ecCCCcEEEEeCCCCeEEEE-e-----cCCCEeEEEEeCC-C-------ceeEE
Q 012410 185 LKWPGFVEFDDVNGKVLTY-------SAQDSIYKVFDLKNYTMLYS-I-----SDKHVQEIKIRSS-S-------HVPLK 243 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaS-------gs~D~tiKlWdl~tg~~l~t-l-----~~~~V~~Vafs~s-~-------d~tIk 243 (464)
+..|..++|+ ++|.++++ +..++.|.+||..+|+.... . ....+..++++++ . ...|.
T Consensus 17 ~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 4567799997 89999888 67889999999999887532 2 1256889999775 2 23688
Q ss_pred EEEcCCCcEEEE-Eee----CCcceeeEEEEccCCCeEEEEe-CC---------------CeEEEEECCCCcEEEEcccC
Q 012410 244 ILSIEDGTVLKV-FYH----LLHRNKKVDFIEQFNEKLLVKQ-EN---------------ENLQILDVRNAELMEVSRTE 302 (464)
Q Consensus 244 lWdi~tG~~l~t-l~~----~~~~~~~V~F~~~~~~~lla~s-~D---------------~tIkIWDv~tg~~l~~l~gh 302 (464)
+||.+ |+.... ... ....+..+++.++ +.+.++. .+ +.|..||.. ++..... .+
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~ 170 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TA 170 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cC
Confidence 89998 887543 221 1134688998774 5666654 44 567778865 7765443 34
Q ss_pred CCceEEEEEc----CCCc-EEEEEe-CCeEEEEeCC--Cc-----eEEEeccCC-CCcCCCCeeEEEECCCCCEEEEEec
Q 012410 303 FMTPSAFIFL----YENQ-LFLTFR-NRTVAVWNFR--GE-----LVTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 303 ~~~v~sv~Fs----pdgq-llaS~s-D~TIklWd~~--Ge-----~l~tl~gH~-~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
...+..++|+ |||+ ++++.. ++.|.+||.. |+ .+..+.++. .. ...++++|||+++++...
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG-----ADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE-----EEEEEEBTTCCEEEEEET
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC-----CCceEECCCCCEEEEEcC
Confidence 4568899999 9996 456656 8999999973 65 344555554 33 578999999999998764
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
++.|.+||..+|+.+..+..+.. .+.+++|+|||+
T Consensus 246 -----------~~~i~~~d~~~g~~~~~~~~~~~----------------------------------~~~~i~~~~dg~ 280 (314)
T 1pjx_A 246 -----------SSHIEVFGPDGGQPKMRIRCPFE----------------------------------KPSNLHFKPQTK 280 (314)
T ss_dssp -----------TTEEEEECTTCBSCSEEEECSSS----------------------------------CEEEEEECTTSS
T ss_pred -----------CCEEEEEcCCCCcEeEEEeCCCC----------------------------------CceeEEECCCCC
Confidence 78999999988999888876643 789999999999
Q ss_pred EEEE-eeCCCcEEecc
Q 012410 449 EIYT-GNRHGLVHVWS 463 (464)
Q Consensus 449 ~LaS-gs~DgtVrlWd 463 (464)
.|+. .+.++.|..|+
T Consensus 281 ~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 281 TIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCeEEEEe
Confidence 6654 45567787775
No 197
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.63 E-value=2.1e-13 Score=131.99 Aligned_cols=217 Identities=12% Similarity=0.152 Sum_probs=156.9
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCC------ceeEEEEEcCCCcEEEEEee-
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSS------HVPLKILSIEDGTVLKVFYH- 258 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~------d~tIklWdi~tG~~l~tl~~- 258 (464)
.++....|++.+|.++.+...+++|..||.++++....-....+..++++|+. +..|.+||.++|+.......
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEECC
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEecC
Confidence 34457889844677888888899999999998876432235779999998853 35789999999876543332
Q ss_pred ---CCcceeeEEEEccCCCeEEEEe--C--------CCeEEEEECCC-CcEEEEcccCCCceEEEEEcCCCcEE-EEEe-
Q 012410 259 ---LLHRNKKVDFIEQFNEKLLVKQ--E--------NENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLF-LTFR- 322 (464)
Q Consensus 259 ---~~~~~~~V~F~~~~~~~lla~s--~--------D~tIkIWDv~t-g~~l~~l~gh~~~v~sv~Fspdgqll-aS~s- 322 (464)
...+...+++.++ +.+.++. . ....+||.+.. |+... +..+...+..++|+|||+.| ++.+
T Consensus 93 ~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp TTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred CCCCCCCCCCEEECCC--CCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCC
Confidence 1234578888774 5666654 2 23456666553 45443 34455678999999999855 5666
Q ss_pred CCeEEEEeC---CCce-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 323 NRTVAVWNF---RGEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 323 D~TIklWd~---~Ge~-----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
+++|.+||+ +|++ +..+..+... ...+++.+||.+.++... .+.|..||..||+++
T Consensus 170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~-----p~g~~~d~~G~lwva~~~-----------~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQI-----PDGMCIDAEGKLWVACYN-----------GGRVIRLDPVTGKRL 233 (297)
T ss_dssp GTEEEEEEECTTTCCEEEEEEEEECCGGGCE-----EEEEEEBTTSCEEEEEET-----------TTEEEEECTTTCCEE
T ss_pred CCcEEEEeccCCCCcccCcEEEEECCCCCCC-----CCeeEECCCCCEEEEEcC-----------CCEEEEEcCCCceEE
Confidence 899999986 4664 2334443333 568999999999988764 788999999999999
Q ss_pred EEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEEeeC
Q 012410 395 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGNR 455 (464)
Q Consensus 395 ~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs-pDg~~LaSgs~ 455 (464)
.++..+.. .+++++|+ ||+++|+-++.
T Consensus 234 ~~i~~p~~----------------------------------~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 QTVKLPVD----------------------------------KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECSSS----------------------------------BEEEEEEESGGGCEEEEEEB
T ss_pred EEEECCCC----------------------------------CceEEEEeCCCCCEEEEEcC
Confidence 99987754 79999999 99999876654
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=2.4e-13 Score=126.95 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=157.9
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
...+++++|+|..++++ ...+ ..+..++..++... .+.......|..++|+ ++|+++++.. ++.|
T Consensus 25 ~p~~i~~~~~g~l~v~~---~~~~------~~i~~~~~~~~~~~----~~~~~~~~~p~~i~~~-~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTS---EGMY------GRVVKLATGSTGTT----VLPFNGLYQPQGLAVD-GAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCCEEEEE---CSSS------CEEEEECC-----E----ECCCCSCCSCCCEEEC-TTCCEEEEET-TTEE
T ss_pred CccceEECCCCCEEEEc---cCCC------CcEEEecCCCcccc----eEeeCCcCCcceeEEC-CCCCEEEEcC-CCEE
Confidence 57899999999977621 2233 46777765444321 1111123457789997 8999888776 8899
Q ss_pred EEEeCCCCeEEEEec--C-CCEeEEEEeCC--------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE
Q 012410 211 KVFDLKNYTMLYSIS--D-KHVQEIKIRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 279 (464)
Q Consensus 211 KlWdl~tg~~l~tl~--~-~~V~~Vafs~s--------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~ 279 (464)
.+||..+.... .+. . ..+..|++.|+ .+..|.+|+..++...............+++.++ +++.++
T Consensus 90 ~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~--g~l~v~ 166 (270)
T 1rwi_B 90 VTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS--GNVYVT 166 (270)
T ss_dssp EEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT--CCEEEE
T ss_pred EEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC--CCEEEE
Confidence 99998765543 332 2 57899999874 2356777766554433222222235588998774 456665
Q ss_pred -eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEec-cCCCCcCCCCeeEEEE
Q 012410 280 -QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYI 356 (464)
Q Consensus 280 -s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~-gH~~~~~~~~v~svaf 356 (464)
..++.|.+||..++........+...+.++++.|+|.++++.. ++.|.+||..|.....+. .+... +.+++|
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----p~~i~~ 241 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT-----PLAVAV 241 (270)
T ss_dssp EGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC-----EEEEEE
T ss_pred ECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC-----ceeEEE
Confidence 4678999999888877665555557899999999999999988 999999999765544433 33333 689999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+|||+++++.+. +++|+++++...+
T Consensus 242 ~~~g~l~v~~~~-----------~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DSDRTVYVADRG-----------NDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCCEEEEEGG-----------GTEEEEECCCGGG
T ss_pred CCCCCEEEEECC-----------CCEEEEEcCCCcc
Confidence 999999888775 8999999976544
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=5.1e-13 Score=143.81 Aligned_cols=251 Identities=12% Similarity=0.033 Sum_probs=180.8
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC--CCeEEEEec-CCCEeEEEEe--
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSIS-DKHVQEIKIR-- 235 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~--tg~~l~tl~-~~~V~~Vafs-- 235 (464)
.++.++|..+++....++ .. ..|..++|| |||++|..++.|++|.+||+. +++.+.++. ...-..++|+
T Consensus 177 ~~V~viD~~t~~v~~~i~---~g--~~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~ 250 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLD---TG--YAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 250 (567)
T ss_dssp TEEEEEETTTCCEEEEEE---CS--SCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred CeEEEEECCCCeEEEEEe---CC--CCccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccc
Confidence 699999999998764332 11 234589997 899999999999999999996 889888887 5567899999
Q ss_pred --CC---------CceeEEEEEcCCCcEEEEEeeC-----------CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCC
Q 012410 236 --SS---------SHVPLKILSIEDGTVLKVFYHL-----------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 293 (464)
Q Consensus 236 --~s---------~d~tIklWdi~tG~~l~tl~~~-----------~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg 293 (464)
|+ .+.+|.|+|..|+++++++.-. ..++..+.++++....++.-.++++|.++|..+.
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 55 3368999999999999987621 1256677777753333333468899999999886
Q ss_pred cEEEEc-ccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeC-CCceEEEecc-CCCCcCCCCeeEEEECCCCCE-EEEEe
Q 012410 294 ELMEVS-RTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF-RGELVTSFED-HLLWHPDCNTNNIYITSDQDL-IISYC 367 (464)
Q Consensus 294 ~~l~~l-~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~-~Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~-LaSgs 367 (464)
+.+.+. ......+..+.|+|||++|+.+. +++|.++|. +|+++.++.- -..+|+.-.. ..++|++.. .++..
T Consensus 331 ~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~--~~~~p~~g~v~~t~~ 408 (567)
T 1qks_A 331 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA--NFVHPTFGPVWATSH 408 (567)
T ss_dssp SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE--EEEETTTEEEEEEEB
T ss_pred ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce--eeECCCCCcEEEeCC
Confidence 544321 22334577889999999887766 889999999 7999888764 3344442112 236898554 44443
Q ss_pred cCCCccccccCCCCeEEEEeCCC-------CeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEE
Q 012410 368 KAEPEDQWMEGSAGSINVSSILT-------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 440 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklWdi~t-------G~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 440 (464)
. .+++|-++|..+ .+.++++.+... .=.-
T Consensus 409 ~----------g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~----------------------------------g~~~ 444 (567)
T 1qks_A 409 M----------GDDSVALIGTDPEGHPDNAWKILDSFPALGG----------------------------------GSLF 444 (567)
T ss_dssp S----------SSSEEEEEECCTTTCTTTBTSEEEEEECSCS----------------------------------CCCC
T ss_pred C----------CCCeEEEecCCCCCCccccCEEEEEEecCCC----------------------------------CCEE
Confidence 2 278999999988 567888876532 1112
Q ss_pred EEEcCCCCEEEEeeC-------CCcEEecc
Q 012410 441 LFYDEERNEIYTGNR-------HGLVHVWS 463 (464)
Q Consensus 441 lafspDg~~LaSgs~-------DgtVrlWd 463 (464)
|.++|||+.|+.... .++|.|+|
T Consensus 445 i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 445 IKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred EEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 678999999998663 35787776
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=6.1e-12 Score=117.95 Aligned_cols=264 Identities=9% Similarity=0.044 Sum_probs=180.6
Q ss_pred cceEEEEec--cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
..+..++.. |++..+...++.+..|+.. ++........+...+.++++.++|..+++ ...+ ..+..+
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~----~~~~------~~i~~~ 83 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFT----ENAA------NKIGRI 83 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEE----ETTT------TEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEe----CCCC------CeEEEE
Confidence 345556555 7777766667889999855 66544332334567999999999997776 2222 355566
Q ss_pred EeccCCCCCcccceee-ccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec--CCCEeEEEEeCC-----
Q 012410 167 YIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKIRSS----- 237 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~--~~~V~~Vafs~s----- 237 (464)
+.. |+. ..+.. .....|..++|+ |+|+++++...++.|.+||. +++... .+. ...+..+++.++
T Consensus 84 ~~~-g~~----~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 156 (299)
T 2z2n_A 84 TKK-GII----KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWF 156 (299)
T ss_dssp CTT-SCE----EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred CCC-CcE----EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEE
Confidence 643 442 11211 122457789997 89999998888889999998 776653 333 356889999764
Q ss_pred ---CceeEEEEEcCCCcEEEE-EeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEE-cccCCCceEEEEE
Q 012410 238 ---SHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIF 311 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~l~t-l~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~F 311 (464)
....|..||. +|+.... +.........+++.++ +.+.++. .++.|.+||. +++.... +..+...|.++++
T Consensus 157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND--DALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT--SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC--CCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEE
Confidence 3467888998 7887653 2222345678888774 5566654 6889999998 8886553 4445678999999
Q ss_pred cCCCcEEEEEe-CCeEEEEeCCCceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 312 LYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 312 spdgqllaS~s-D~TIklWd~~Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
.|+|+++++.. ++.|..||.+|+.... +.++... +.++++ ++|++.++.+ .+.|..+|..
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-----~~~i~~-~~g~l~v~~~------------~~~l~~~~~~ 294 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAE-----PHGICF-DGETIWFAME------------CDKIGKLTLI 294 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCC-----EEEEEE-CSSCEEEEET------------TTEEEEEEEC
T ss_pred CCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCc-----cceEEe-cCCCEEEEec------------CCcEEEEEcC
Confidence 99999999886 8999999998765432 3444444 789999 9999998864 3455566666
Q ss_pred CCe
Q 012410 390 TGK 392 (464)
Q Consensus 390 tG~ 392 (464)
+++
T Consensus 295 ~~~ 297 (299)
T 2z2n_A 295 KDN 297 (299)
T ss_dssp ---
T ss_pred ccc
Confidence 553
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=1e-13 Score=134.91 Aligned_cols=174 Identities=8% Similarity=0.065 Sum_probs=138.4
Q ss_pred EeCCCceeEEEEEcCCCcEEEEEeeCC-cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-CCceEEEEE
Q 012410 234 IRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIF 311 (464)
Q Consensus 234 fs~s~d~tIklWdi~tG~~l~tl~~~~-~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-~~~v~sv~F 311 (464)
+..+.++.|.+||.+||+.+.++..+. .....++++|. +.+++ +.++.|+.||. +|+.+..+..+ ...+.++.+
T Consensus 9 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd--G~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 9 VGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA--GEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp EECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT--SCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEE
T ss_pred EeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC--CCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEE
Confidence 445788999999999999999998532 35688999884 66777 66889999998 99999887765 346889999
Q ss_pred cCCCcEEEEEe--CCeEEEEeCCCceEEEec------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 312 LYENQLFLTFR--NRTVAVWNFRGELVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 312 spdgqllaS~s--D~TIklWd~~Ge~l~tl~------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
+|||+++++.+ ++.|..+|.+|+.+.++. ++..+ .+.+++.|||++|++.+. ++.|
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~-----~~~v~~~~~G~~lv~~~~-----------~~~v 148 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQ-----FRQINKNKKGNYLVPLFA-----------TSEV 148 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGS-----CSCCEECTTSCEEEEETT-----------TTEE
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccccc-----ccCceECCCCCEEEEecC-----------CCEE
Confidence 99999999977 456666677899998876 22222 456789999999998865 8999
Q ss_pred EEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 384 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..||.. |+-+.++..+. .+.++.+.|+|++|++++.++.|..+|
T Consensus 149 ~~~d~~-G~~~w~~~~~~-----------------------------------~~~~~~~~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLSG-----------------------------------TPFSSAFLDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp EEECTT-SCEEEEEECSS-----------------------------------CCCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred EEECCC-CCEEEEEECCC-----------------------------------CccceeEcCCCCEEEEeCCCCeEEEEe
Confidence 999986 99999997753 345677788888888888877777665
No 202
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.60 E-value=5.1e-14 Score=139.53 Aligned_cols=255 Identities=10% Similarity=0.088 Sum_probs=169.0
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce---eeccccCceEEEEeCCCCcEEEEecC
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF---ESESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~---~~~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.....|+++|+|+++++...+. .+ .++||.+..|++. .++.+ ..+.+.+|..|+|+ ++|++++..+.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~-~~-------~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g 86 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY-QP-------EMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNG 86 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG-CC-------SCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECH
T ss_pred CCcceEEECCCCCEEEEeCCCC-CC-------ceEEEEECCCCee-cCCCcccCcccceeEeeEEEEc-CCCcEEEEcCC
Confidence 5689999999999888843221 11 2567777655432 12211 12246678899997 89988776543
Q ss_pred -----CCcEEEEeCCCCeEEEEec--C------CCEeEEEEeCC------------CceeEEEEEcCCCcEEEEEeeCCc
Q 012410 207 -----DSIYKVFDLKNYTMLYSIS--D------KHVQEIKIRSS------------SHVPLKILSIEDGTVLKVFYHLLH 261 (464)
Q Consensus 207 -----D~tiKlWdl~tg~~l~tl~--~------~~V~~Vafs~s------------~d~tIklWdi~tG~~l~tl~~~~~ 261 (464)
+..|.+||+++|+.+.++. . ..+.+|+|.|. .+..|.+||.++|+..+.+.++..
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 6789999999999877654 1 24688999752 457899999999998777753211
Q ss_pred ce-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC------C
Q 012410 262 RN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------G 333 (464)
Q Consensus 262 ~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~------G 333 (464)
.. ..+.|.++ +..+...+.|++++.|. ..+..++|+|||+.|..+. +++ +||.+. +
T Consensus 167 ~~~~~~~~~~~-g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 167 IAPEDIDLVID-GVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL 230 (343)
T ss_dssp TSCCSCCCEET-TEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT
T ss_pred ccccccceeEC-CEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC
Confidence 11 11344442 33334466788887774 2467899999999777776 553 666642 1
Q ss_pred c-----eEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 334 E-----LVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 334 e-----~l~--tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
. ... ...++... ...+++++||.+.++... +++|.+||..+|+. .++....
T Consensus 231 ~~~~~~~~~~~~~~g~~g~-----pdgia~d~~G~l~va~~~-----------~~~V~~~d~~~G~~-~~~~~~~----- 288 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPI-----CDGISIDKDHNIYVGDLA-----------HSAIGVITSADRAY-KLLVTDE----- 288 (343)
T ss_dssp TCCHHHHHTTCEEEEECCS-----CSCEEECTTCCEEEEEGG-----------GTEEEEEETTTTEE-EEEEECG-----
T ss_pred CCChhhhhcceEecccCCC-----CceEEECCCCCEEEEccC-----------CCeEEEEECCCCCE-EEEEECC-----
Confidence 1 110 12234332 357999999999998765 89999999767874 3332211
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
.+..+.+++|+|||+.+++.+..+.+
T Consensus 289 ---------------------------~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 289 ---------------------------KLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ---------------------------GGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred ---------------------------ceecCCeeEECCCCcEEEEeCccccc
Confidence 12378999999999999888865544
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.58 E-value=1.8e-11 Score=114.82 Aligned_cols=255 Identities=11% Similarity=0.071 Sum_probs=179.6
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee-ccccCceEEEEeCCCCcEEEEecC
Q 012410 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQ 206 (464)
Q Consensus 128 ~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-~~~~~~~~VaFs~pdGk~LaSgs~ 206 (464)
.....++|++.++|..+++ ...+ ..+.+++.. |+.. .+.. .....|..++++ ++|.+.++...
T Consensus 18 ~~~~p~~i~~d~~g~l~v~----~~~~------~~v~~~~~~-~~~~----~~~~~~~~~~~~~i~~~-~~g~l~v~~~~ 81 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFT----QHKA------NKISSLDQS-GRIK----EFEVPTPDAKVMCLIVS-SLGDIWFTENG 81 (300)
T ss_dssp TTCCEEEEEECTTSCEEEE----ETTT------TEEEEECTT-SCEE----EEECSSTTCCEEEEEEC-TTSCEEEEETT
T ss_pred CCCCcceeeECCCCCEEEE----cCCC------CeEEEECCC-CceE----EEECCCCCCcceeEEEC-CCCCEEEEecC
Confidence 4457899999999997776 2222 466667755 5542 1111 123457789997 89999988877
Q ss_pred CCcEEEEeCCCCeEE-EEec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEEE-EeeCCcceeeEEEEccCCC
Q 012410 207 DSIYKVFDLKNYTML-YSIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNE 274 (464)
Q Consensus 207 D~tiKlWdl~tg~~l-~tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~t-l~~~~~~~~~V~F~~~~~~ 274 (464)
++.|..+|.. |+.. ..+. ...+..+++.++ ....|..+|.+ |+.... +.........+++.++ +
T Consensus 82 ~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~--g 157 (300)
T 2qc5_A 82 ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD--N 157 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--S
T ss_pred CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC--C
Confidence 8899999988 7654 2333 357899999763 24578888887 776632 2222345678888774 5
Q ss_pred eEEEEe-CCCeEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEE-eccCCCCcCCCC
Q 012410 275 KLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCN 350 (464)
Q Consensus 275 ~lla~s-~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~t-l~gH~~~~~~~~ 350 (464)
.+.++. .++.|..+|. +++.... +.++...+..+++.++|+++++.. ++.|.++|.+|+.... +..+...
T Consensus 158 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~----- 231 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNAR----- 231 (300)
T ss_dssp SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCC-----
T ss_pred CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCC-----
Confidence 566654 5789999998 7776653 334556799999999999999887 7899999998876553 3333333
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-EccCCCCCCcccccCCCCCCccccccccccccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 429 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (464)
+.++++.|+|++.++... ++.|..+|. +|+.... +....
T Consensus 232 ~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~---------------------------- 271 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWG-----------ANQIGRITN-DNTIQEYQLQTEN---------------------------- 271 (300)
T ss_dssp EEEEEECSTTCEEEEETT-----------TTEEEEECT-TSCEEEEECCSTT----------------------------
T ss_pred ceEEEECCCCCEEEeccC-----------CCeEEEECC-CCcEEEEECCccC----------------------------
Confidence 789999999998887643 689999997 6764322 11111
Q ss_pred cccccccCEEEEEEcCCCCEEEEee
Q 012410 430 TVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 430 ~~~~~l~~V~slafspDg~~LaSgs 454 (464)
..+.+++++|||+..++..
T Consensus 272 ------~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 272 ------AEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp ------CCCCCEEECTTSCEEEECS
T ss_pred ------CccceeEeCCCCCEEEEcc
Confidence 1577899999999777766
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=1.1e-11 Score=125.94 Aligned_cols=264 Identities=7% Similarity=-0.060 Sum_probs=175.9
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce-eec--cc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF-ESE--SL 185 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~-~~~--~~ 185 (464)
.+.++|..+++.+..+..+. . -.++|||||+.|.++..+.+..-.+-...++.++|..+++..+..++- ... ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~-~--p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF-L--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCeEEEEecCCC-C--CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 78999999999998885532 2 289999999999986533211000001147888898888775543321 000 01
Q ss_pred cCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEE-ecCCCEeEEEEeC---------CCceeEEEEEcCCCcEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKHVQEIKIRS---------SSHVPLKILSIEDGTVL 253 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~t-l~~~~V~~Vafs~---------s~d~tIklWdi~tG~~l 253 (464)
.+|..++|| |||+.|..+.. +.+|-++| ++++.+.+ +..... +.+.| ..|+.+.++|. +|+..
T Consensus 125 ~~p~~~~~s-pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 125 PYSWMNANT-PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC--YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred CCccceEEC-CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce--EEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 467789997 99999988764 57899999 99999888 762211 22222 25778899999 89887
Q ss_pred EEEe------eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE--EEEccc-------C---CCceEEEEEcCCC
Q 012410 254 KVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSRT-------E---FMTPSAFIFLYEN 315 (464)
Q Consensus 254 ~tl~------~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~--l~~l~g-------h---~~~v~sv~Fspdg 315 (464)
.... +.........|.++ ++.++..+.++++.+.|+.+++. +..+.- . ......++|+||+
T Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 200 GAGLVGAMLTAAQNLLTQPAQANK-SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred EEEeccccccCCcceeecceeEec-CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 4322 11011123456664 45555555778999999876642 222210 1 1123347889998
Q ss_pred cEEEEEe-C----------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCe
Q 012410 316 QLFLTFR-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 316 qllaS~s-D----------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+.+-.+. + ++|-+.|. +++.++++..-.. .+.++|||||+ +|+++.. .+++
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~------p~~i~~s~Dg~~~l~v~~~----------~~~~ 342 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD------VDAISVAQDGGPDLYALSA----------GTEV 342 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC------cCeEEECCCCCeEEEEEcC----------CCCe
Confidence 8665543 2 47999999 6999998864332 46899999999 7777652 2799
Q ss_pred EEEEeCCCCeEEEEE
Q 012410 383 INVSSILTGKCLAKI 397 (464)
Q Consensus 383 IklWdi~tG~cl~tl 397 (464)
|-++|+.|++.++++
T Consensus 343 V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 343 LHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCCEEeee
Confidence 999999999999985
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=2.5e-11 Score=123.40 Aligned_cols=274 Identities=8% Similarity=0.042 Sum_probs=178.8
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----------
Q 012410 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---------- 205 (464)
Q Consensus 136 ~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs---------- 205 (464)
...|+++.+.++. . .++..+. ++.++|..+|+.....+ .+ ..| .++|| |||+.|..+.
T Consensus 27 ~~~~~~~~~yv~~--~-~~~~~~~--~v~v~D~~t~~~~~~i~---~g--~~p-~i~~s-pDg~~lyv~n~~~~~~~rg~ 94 (373)
T 2mad_H 27 APGADGRRSYINL--P-AHHSAII--QQWVLDAGSGSILGHVN---GG--FLP-NPVAA-HSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred cCCCCCCEEEEeC--C-cccCCcc--EEEEEECCCCeEEEEec---CC--CCC-CeEEC-CCCCEEEEEeccccccccCC
Confidence 3447777665522 2 0111222 78888988888754322 11 235 89997 9999988775
Q ss_pred CCCcEEEEeCCCCeEEEEecC---------CCEeEEEEeCC---------C-ceeEEEEEcCCCcEEEE-EeeCCcceee
Q 012410 206 QDSIYKVFDLKNYTMLYSISD---------KHVQEIKIRSS---------S-HVPLKILSIEDGTVLKV-FYHLLHRNKK 265 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~~---------~~V~~Vafs~s---------~-d~tIklWdi~tG~~l~t-l~~~~~~~~~ 265 (464)
.+.+|-+||..+++.+.++.- ..-..++|+|+ . +..|.++| ++|+.+.+ +... ..
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~ 169 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TC 169 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ce
Confidence 367899999999998887652 23457889884 2 46799999 99999988 6521 22
Q ss_pred EEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcc-----cCCCc-eEEEEEcCCCcEEEEEe-CCeEEEEeCC-C--ce
Q 012410 266 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-----TEFMT-PSAFIFLYENQLFLTFR-NRTVAVWNFR-G--EL 335 (464)
Q Consensus 266 V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~-----gh~~~-v~sv~FspdgqllaS~s-D~TIklWd~~-G--e~ 335 (464)
+.+.|..+..+++.+.|+++..+|. +++...... ..... .....|++++..++-.+ .++|-+.|+. + +.
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE
Confidence 5566654445555678999999999 888764321 11111 12345777665544444 7899999984 3 23
Q ss_pred EEEecc------CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccc
Q 012410 336 VTSFED------HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 409 (464)
Q Consensus 336 l~tl~g------H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~ 409 (464)
+.+++- ...|.+.. ...++|+|||+.|..+.....+.. -...+++|-+.|+.|++.+++|..-.
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~~~~~~~~-~~~~~~~V~VID~~t~~vv~~i~~g~-------- 318 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLTSEQSAWK-LHAAAKEVTSVTGLVGQTSSQISLGH-------- 318 (373)
T ss_pred eeeeeecCCcccccceecCc-eEeEEECCCCCEEEEEeccCCccc-ccCCCCeEEEEECCCCEEEEEEECCC--------
Confidence 344431 12232221 345889999998877653100000 00114689999999999999995432
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEee-CCCcEEeccC
Q 012410 410 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs-~DgtVrlWd~ 464 (464)
..++++|+|||+ .||+++ .+++|.++|.
T Consensus 319 ---------------------------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 319 ---------------------------DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred ---------------------------CcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 467899999999 899998 5999999983
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=7.7e-12 Score=118.96 Aligned_cols=245 Identities=10% Similarity=0.085 Sum_probs=154.3
Q ss_pred cceeeh-------hccCCeEEeeecccccEeeEee---cCCCceEEEEEEeeC-CCEEEEEEeecCCCCcccceeeEEEE
Q 012410 98 RDIVFA-------LAHSGVCAAFSRETNRRICFLN---VSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 98 g~~l~~-------l~~~g~~~~~~~~~g~~l~~ln---~~~~~~i~Sv~fs~~-g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
|+++++ ...++.+..|+..+|+...... .++...+.+++++++ |..+++ + .. ..+.++
T Consensus 29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~---~~-------~~l~~~ 97 (314)
T 1pjx_A 29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-D---MR-------LGLLVV 97 (314)
T ss_dssp SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-E---TT-------TEEEEE
T ss_pred CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-E---CC-------CCEEEE
Confidence 677766 5778889999877887654332 013356899999999 765555 1 22 256777
Q ss_pred EeccCCCCCc-ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEE
Q 012410 167 YIRRGKPDSG-FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKIL 245 (464)
Q Consensus 167 ~i~~G~~~~~-~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklW 245 (464)
+.. |+.... ...........|..++|+ |+|+++++.+.++.+ ..+.. .. .......|..+
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~----~~~~~-----~~--------~~~~~~~l~~~ 158 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVA----PADYT-----RS--------MQEKFGSIYCF 158 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCT----TSCCC-----BT--------TSSSCEEEEEE
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccc----ccccc-----cc--------ccCCCCeEEEE
Confidence 866 765211 111111112456789997 899988876554200 00000 00 00111223333
Q ss_pred EcCCCcEEEEEeeCCcceeeEEEE----ccCCCeEEEE-eCCCeEEEEECC-CCc-----EEEEcccCC-CceEEEEEcC
Q 012410 246 SIEDGTVLKVFYHLLHRNKKVDFI----EQFNEKLLVK-QENENLQILDVR-NAE-----LMEVSRTEF-MTPSAFIFLY 313 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~~V~F~----~~~~~~lla~-s~D~tIkIWDv~-tg~-----~l~~l~gh~-~~v~sv~Fsp 313 (464)
|.. |+......+. .....++|+ ++ +..+.++ ..++.|.+||+. +|+ ....+.++. ..+..+++++
T Consensus 159 ~~~-g~~~~~~~~~-~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 159 TTD-GQMIQVDTAF-QFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp CTT-SCEEEEEEEE-SSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred CCC-CCEEEeccCC-CCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 333 4433322221 334677887 63 3356565 478999999986 565 334455554 6789999999
Q ss_pred CCcEEEEEe-CCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 314 ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 314 dgqllaS~s-D~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
+|+++++.. ++.|.+||.+ |+.+.++..+... +.+++|+|||++|..++. .++.|..+++.+
T Consensus 236 ~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~i~~~~dg~~l~v~~~----------~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEK-----PSNLHFKPQTKTIFVTEH----------ENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSC-----EEEEEECTTSSEEEEEET----------TTTEEEEEECSS
T ss_pred CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCC-----ceeEEECCCCCEEEEEeC----------CCCeEEEEeCCC
Confidence 999999987 8999999995 9998888877655 789999999995544432 267899999754
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=4.9e-12 Score=130.69 Aligned_cols=272 Identities=12% Similarity=0.090 Sum_probs=183.8
Q ss_pred CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceee---c
Q 012410 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES---E 183 (464)
Q Consensus 107 ~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~---~ 183 (464)
++.+.+.|..+++.+.++..+.. . . +++||||+.|.+++.+.+...++-...++.++|..+++..+..++-.. .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 57899999999999999976444 3 4 999999999988765433211111125799999999987654332110 0
Q ss_pred cccCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEecCCCEeEEEEe--------CCCceeEEEEEcCC-CcE
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSISDKHVQEIKIR--------SSSHVPLKILSIED-GTV 252 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~~~~V~~Vafs--------~s~d~tIklWdi~t-G~~ 252 (464)
.-.+|..++|+ |||+.|..+.. +++|-|+|+++++.+.++.-.... ..++ -+.|+.+-+.++++ |+.
T Consensus 135 ~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 135 VGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp BSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred cCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc-eeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 11367789997 99998776653 689999999999999988632221 1121 13577888888876 777
Q ss_pred EEEEeeCC----cce-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcE--EEEcc---------c-CCCceEEEEEcCCC
Q 012410 253 LKVFYHLL----HRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSR---------T-EFMTPSAFIFLYEN 315 (464)
Q Consensus 253 l~tl~~~~----~~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~--l~~l~---------g-h~~~v~sv~Fspdg 315 (464)
..+..... ..+ ..++|.+. +++++..+.+++|.+.|+.++.. +.... + .-...-.++++|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 213 EITHTEVFHPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp EEEECCCCSCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEeecceeccccccccccceeEcC-CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 54332111 111 12466543 46777777789999999877652 22111 0 00111246779888
Q ss_pred cEEEEEe-C----------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCe
Q 012410 316 QLFLTFR-N----------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 316 qllaS~s-D----------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~Dgt 382 (464)
+.+-... + ++|-+-|. +++.++++.--. . +++|+|||||+ +|.+.+. .+++
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~-----~~~lavs~D~~~~ly~tn~----------~~~~ 355 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-E-----IDSINVSQDEKPLLYALST----------GDKT 355 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-E-----ECEEEECSSSSCEEEEEET----------TTTE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-C-----cceEEECCCCCeEEEEEcC----------CCCe
Confidence 8766653 1 47888899 799999876322 1 67999999997 6766543 3899
Q ss_pred EEEEeCCCCeEEEEEccC
Q 012410 383 INVSSILTGKCLAKINAT 400 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh 400 (464)
|-+.|..||+-++++..-
T Consensus 356 VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 356 LYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEEETTTCCEEEEECCC
T ss_pred EEEEECCCCcEEEEecCC
Confidence 999999999999999653
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.51 E-value=6.7e-11 Score=110.89 Aligned_cols=220 Identities=14% Similarity=0.065 Sum_probs=162.6
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec--CCCEeEEEEeCC--------CceeEEEEEcCCCcEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKIRSS--------SHVPLKILSIEDGTVLK 254 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~--~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~ 254 (464)
..|..|+++ ++|++.++...++.|.+||.. ++... .+. ...+..|++.++ .+..|..+|.. |+..
T Consensus 20 ~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~- 95 (300)
T 2qc5_A 20 SGPYGITSS-EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT- 95 (300)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred CCcceeeEC-CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-
Confidence 456689996 899999988888999999988 76653 333 257889999763 34678889987 7764
Q ss_pred EEe--eCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEE-cccCCCceEEEEEcCCCcEEEEEe-CCeEEEE
Q 012410 255 VFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 255 tl~--~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~-l~gh~~~v~sv~FspdgqllaS~s-D~TIklW 329 (464)
.+. ........+++.+. +.+.++. .++.|..+|.. |+.... +......+.++++.|+|+++++.. ++.|..+
T Consensus 96 ~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 333 22345688888763 5666655 58899999987 777653 444556899999999999998888 8899999
Q ss_pred eCCCceEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE-EccCCCCCCcc
Q 012410 330 NFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK-INATNCSPKVD 407 (464)
Q Consensus 330 d~~Ge~l~t-l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t-l~gh~~~~~~~ 407 (464)
|.+|+.... +.++... +..+++.|+|.+.++... .+.|.++|. +|+.... +..+.
T Consensus 173 ~~~g~~~~~~~~~~~~~-----~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~------ 229 (300)
T 2qc5_A 173 TNTGKLEEYPLPTNAAA-----PVGITSGNDGALWFVEIM-----------GNKIGRITT-TGEISEYDIPTPN------ 229 (300)
T ss_dssp CTTCCEEEEECSSTTCC-----EEEEEECTTSSEEEEETT-----------TTEEEEECT-TCCEEEEECSSTT------
T ss_pred CCCCcEEEeeCCCCCCC-----cceEEECCCCCEEEEccC-----------CCEEEEEcC-CCcEEEEECCCCC------
Confidence 998886642 2233333 789999999999887653 678999997 7775543 21111
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 408 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+.+++++|+|+..++...++.|..+|
T Consensus 230 ----------------------------~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 230 ----------------------------ARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp ----------------------------CCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred ----------------------------CCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 1688999999999777777778888776
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.50 E-value=2e-11 Score=120.26 Aligned_cols=213 Identities=9% Similarity=0.014 Sum_probs=148.6
Q ss_pred ceEEEEeCCC-CcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCC------ceeEEEEEcCCCcEEEEEee--
Q 012410 188 PGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSS------HVPLKILSIEDGTVLKVFYH-- 258 (464)
Q Consensus 188 ~~~VaFs~pd-Gk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~------d~tIklWdi~tG~~l~tl~~-- 258 (464)
+...+|+ |+ +.++.++..++.|.+||.++++....-....|.+++++|+. ...|.+||.++|+.......
T Consensus 51 ~egp~~~-~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 51 GEGPTFD-PASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp EEEEEEE-TTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSST
T ss_pred CcCCeEe-CCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeCCC
Confidence 4478897 65 66777777889999999998876432225679999998752 23488999999986543321
Q ss_pred --CCcceeeEEEEccCCCeEEEEeCC-----CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEE-EEEe-CCeEEEE
Q 012410 259 --LLHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVW 329 (464)
Q Consensus 259 --~~~~~~~V~F~~~~~~~lla~s~D-----~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgqll-aS~s-D~TIklW 329 (464)
....+..+++.++ +.+.++..+ .+..||.+.+|+..... .+...+..++|+|||+.| ++.+ ++.|.+|
T Consensus 130 ~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~ 206 (326)
T 2ghs_A 130 DLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIYHVAKGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRV 206 (326)
T ss_dssp TCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred CCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEEEEeCCcEEEee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEE
Confidence 1134678888874 556665421 23445444467654433 344567899999999855 5555 8899999
Q ss_pred eC---CC-ce-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 330 NF---RG-EL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 330 d~---~G-e~-----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
|+ +| ++ +..+.++... ...+++.+||.+.++... ++.|.+||. +|+.+.++..+
T Consensus 207 d~~~~~Gl~~~~~~~~~~~~~~~~~-----p~gi~~d~~G~lwva~~~-----------~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 207 PLDARTGLPTGKAEVFIDSTGIKGG-----MDGSVCDAEGHIWNARWG-----------EGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSE-----EEEEEECTTSCEEEEEET-----------TTEEEEECT-TCCEEEEEECS
T ss_pred EcccccCCcccCceEEEECCCCCCC-----CCeeEECCCCCEEEEEeC-----------CCEEEEECC-CCCEEEEEECC
Confidence 97 36 42 3344433322 568999999999887654 688999997 89998888766
Q ss_pred CCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEEeeC
Q 012410 401 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTGNR 455 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs-pDg~~LaSgs~ 455 (464)
.. .+++++|+ ||++.|+.++.
T Consensus 270 ~~----------------------------------~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 GK----------------------------------QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CS----------------------------------BEEEEEEESTTSCEEEEEEB
T ss_pred CC----------------------------------CcEEEEEecCCCCEEEEEec
Confidence 54 79999999 99998865544
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=1.2e-12 Score=142.41 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=146.5
Q ss_pred eEEEEeCCCCcEEEE-----ecCCCcEEEEeCCCCeEEE-EecC----CCEeE----EEEeCCC------------ceeE
Q 012410 189 GFVEFDDVNGKVLTY-----SAQDSIYKVFDLKNYTMLY-SISD----KHVQE----IKIRSSS------------HVPL 242 (464)
Q Consensus 189 ~~VaFs~pdGk~LaS-----gs~D~tiKlWdl~tg~~l~-tl~~----~~V~~----Vafs~s~------------d~tI 242 (464)
+.++|| |||+.||+ |+.+.+|+|||+++|+.+. ++.. .-.|+ |+|.... ...|
T Consensus 132 ~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v 210 (693)
T 3iuj_A 132 DQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKV 210 (693)
T ss_dssp EEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCCEE
T ss_pred EEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCcEE
Confidence 378997 99999995 4455799999999999764 3321 12222 4442211 1349
Q ss_pred EEEEcCCCcE--EEEEee---CCcceeeEEEEccCCCeEEEEe----CCCeEEEEECCCCc-EEEEcccCCCceEEEEEc
Q 012410 243 KILSIEDGTV--LKVFYH---LLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAE-LMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 243 klWdi~tG~~--l~tl~~---~~~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg~-~l~~l~gh~~~v~sv~Fs 312 (464)
++|++.+++. ...++. +.....++.|+| ++..|++.. .+..|.+||+.+++ ..+.+..+.........+
T Consensus 211 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 289 (693)
T 3iuj_A 211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDN 289 (693)
T ss_dssp EEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEE
T ss_pred EEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEec
Confidence 9999988753 222332 222457889988 466666543 33589999998874 455666676666666444
Q ss_pred CCCcEEEEEe-C---CeEEEEeC-CCce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC--eE
Q 012410 313 YENQLFLTFR-N---RTVAVWNF-RGEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG--SI 383 (464)
Q Consensus 313 pdgqllaS~s-D---~TIklWd~-~Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg--tI 383 (464)
+++++++.+. | ..|.+||+ ++++ .++|..|... +. .|+|+|+.|+.... .|+ .|
T Consensus 290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~--~~s~~g~~lv~~~~----------~~g~~~l 352 (693)
T 3iuj_A 290 KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-----VL--TVHSGSGYLFAEYM----------VDATARV 352 (693)
T ss_dssp ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-----CE--EEEEETTEEEEEEE----------ETTEEEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-----EE--EEEEECCEEEEEEE----------ECCeeEE
Confidence 5556666665 4 57889999 4655 5678888765 33 89999999887765 133 79
Q ss_pred EEEeCCCCeEEEEEcc-CCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCC----Cc
Q 012410 384 NVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH----GL 458 (464)
Q Consensus 384 klWdi~tG~cl~tl~g-h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~D----gt 458 (464)
++||+. |+.++.+.- +.. .|..+.++||++.|+-...+ ++
T Consensus 353 ~~~d~~-g~~~~~l~~p~~~----------------------------------~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 353 EQFDYE-GKRVREVALPGLG----------------------------------SVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp EEECTT-SCEEEEECCSSSS----------------------------------EEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred EEEECC-CCeeEEeecCCCc----------------------------------eEEeeecCCCCCEEEEEecCCCCCCE
Confidence 999986 555565532 211 56778888999888766554 77
Q ss_pred EEecc
Q 012410 459 VHVWS 463 (464)
Q Consensus 459 VrlWd 463 (464)
|.+||
T Consensus 398 l~~~d 402 (693)
T 3iuj_A 398 LYRFE 402 (693)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77776
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.47 E-value=4.5e-12 Score=137.76 Aligned_cols=244 Identities=11% Similarity=0.044 Sum_probs=165.6
Q ss_pred CCCceEEEEEEeeCCCEEEEEEee-cCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 127 SPDEVIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 127 ~~~~~i~Sv~fs~~g~~l~svSa~-~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
.+...+.++.|||||+.||-++.. +++. .+++++|+.+|+... ...... ....++|+ ||+.|++++
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~------~~i~v~dl~tg~~~~---~~~~~~--k~~~~~Ws--Dg~~l~y~~ 192 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDW------REIHLMDVESKQPLE---TPLKDV--KFSGISWL--GNEGFFYSS 192 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCE------EEEEEEETTTCSEEE---EEEEEE--ESCCCEEE--TTTEEEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCce------EEEEEEECCCCCCCc---cccCCc--eeccEEEe--CCCEEEEEE
Confidence 344578999999999988864432 3344 799999999998632 111111 01378996 999999999
Q ss_pred CCCc-------------EEEEeCCCCe----EEEEecC---CCEeEEEEeCC------------CceeEEEEEcCCCc-E
Q 012410 206 QDSI-------------YKVFDLKNYT----MLYSISD---KHVQEIKIRSS------------SHVPLKILSIEDGT-V 252 (464)
Q Consensus 206 ~D~t-------------iKlWdl~tg~----~l~tl~~---~~V~~Vafs~s------------~d~tIklWdi~tG~-~ 252 (464)
.|.+ |++|++.+++ +++...+ ..+.++.+||+ ....|.+||+++++ .
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~ 272 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP 272 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence 9855 9999998875 4554433 34678888874 22478999998874 4
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEEe-C---CCeEEEEECCCCcE--EEEcccCCCceEEEEEcCCCcEEEEEe--CC
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-E---NENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR--NR 324 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~s-~---D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~FspdgqllaS~s--D~ 324 (464)
++.+.........+ +.+ +++++++.+ . ...|..+|+.++++ .+.+..|...+. .|+|+|+.|+... |+
T Consensus 273 ~~~l~~~~~~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 273 LLTVQGDLDADVSL-VDN-KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp CEEEECSSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT
T ss_pred eEEEeCCCCceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC
Confidence 55665433333444 445 367777644 3 36899999998875 345566666665 8999999887766 54
Q ss_pred --eEEEEeCCCceEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 325 --TVAVWNFRGELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 325 --TIklWd~~Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
.|++||++|...+.+.- +... +..+.++||++.|+-...+ ...-++|..||+.+|+. ..|...
T Consensus 349 ~~~l~~~d~~g~~~~~l~~p~~~~-----~~~~~~~~d~~~l~~~~ss-------~~tP~~l~~~d~~~g~~-~~l~~~ 414 (693)
T 3iuj_A 349 TARVEQFDYEGKRVREVALPGLGS-----VSGFNGKHDDPALYFGFEN-------YAQPPTLYRFEPKSGAI-SLYRAS 414 (693)
T ss_dssp EEEEEEECTTSCEEEEECCSSSSE-----EEECCCCTTCSCEEEEEEC-------SSSCCEEEEECTTTCCE-EEEECC
T ss_pred eeEEEEEECCCCeeEEeecCCCce-----EEeeecCCCCCEEEEEecC-------CCCCCEEEEEECCCCeE-EEEEeC
Confidence 78999998777776653 2223 6678888998877655431 01238999999988874 445443
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.46 E-value=1.3e-12 Score=129.44 Aligned_cols=211 Identities=11% Similarity=0.073 Sum_probs=149.3
Q ss_pred cCceEEEEeCCCCcEEEEec--CCCcEEEEeCCCCeEEEEec---------CCCEeEEEEeCC--------C-----cee
Q 012410 186 KWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS---------DKHVQEIKIRSS--------S-----HVP 241 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs--~D~tiKlWdl~tg~~l~tl~---------~~~V~~Vafs~s--------~-----d~t 241 (464)
.+|..|+|+ |||+++++.. .++.++||.+.+|++. .+. -..+..|+|.++ . +..
T Consensus 17 ~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 578899997 8999999864 2344788887777643 332 146899999873 1 357
Q ss_pred EEEEEcCCCcEEEEEeeC------CcceeeEEEEccCCCeEEEE-e---CCCeEEEEECCCCcEEEEcccCCC-ceEEEE
Q 012410 242 LKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFNEKLLVK-Q---ENENLQILDVRNAELMEVSRTEFM-TPSAFI 310 (464)
Q Consensus 242 IklWdi~tG~~l~tl~~~------~~~~~~V~F~~~~~~~lla~-s---~D~tIkIWDv~tg~~l~~l~gh~~-~v~sv~ 310 (464)
|.+||+++|++++++... ......|+|.+. ++.+.++ + .++.|.+||+.+|+..+++.+|.. .+..+.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~-~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI-HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT-TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecC-CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 999999999998887621 123478999874 4566554 3 689999999999999998887632 222256
Q ss_pred EcCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 311 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 311 FspdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
|+++|+.|.+.+ |++++.|.. . ++.|+|||||++|..+.. ++. +||.+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~-------------~-----~~gia~s~dg~~ly~~~~-----------~~~-~l~~~~ 223 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHL-------------G-----VNGIVLDAENEWLYLSPM-----------HST-SMYRIK 223 (343)
T ss_dssp CEETTEECBEECTTSCEECCCC-------------C-----EEEEEECTTSCEEEEEES-----------SCS-EEEEEE
T ss_pred eeECCEEEEeccCCCceeceec-------------c-----cceeEeccCCCEEEEEeC-----------CCC-eEEEEE
Confidence 788999998888 999888751 1 678999999999988764 332 566553
Q ss_pred CCeE----------EE--EEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 390 TGKC----------LA--KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 390 tG~c----------l~--tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
+... .. +..++.. ....+++++||+.+++...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g----------------------------------~pdgia~d~~G~l~va~~~~~ 269 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKP----------------------------------ICDGISIDKDHNIYVGDLAHS 269 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECC----------------------------------SCSCEEECTTCCEEEEEGGGT
T ss_pred HHHhcCCCCChhhhhcceEecccCC----------------------------------CCceEEECCCCCEEEEccCCC
Confidence 2110 00 0001111 334689999999999999999
Q ss_pred cEEecc
Q 012410 458 LVHVWS 463 (464)
Q Consensus 458 tVrlWd 463 (464)
.|.+||
T Consensus 270 ~V~~~d 275 (343)
T 2qe8_A 270 AIGVIT 275 (343)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999997
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.43 E-value=2.7e-11 Score=124.28 Aligned_cols=221 Identities=10% Similarity=0.092 Sum_probs=158.4
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC--
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-- 208 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~-- 208 (464)
..+.|+++|+|+.+++ ...+ +.|+.++..+|++.. +... ...+. ++|+ |+|+.|..+..++
T Consensus 132 ~P~~la~d~~g~lyv~----d~~~------~~I~~id~~~g~~~~---~~~~--~~~~~-ia~~-~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAY----QRDD------PRVRLISVDDNKVTT---VHPG--FKGGK-PAVT-KDKQRVYSIGWEGTH 194 (409)
T ss_dssp CEEEEEECSTTEEEEE----ETTT------TEEEEEETTTTEEEE---EEET--CCBCB-CEEC-TTSSEEEEEBSSTTC
T ss_pred CceEEEEeCCCCEEEE----ecCC------CcEEEEECCCCEEEE---eecc--CCCCc-eeEe-cCCCcEEEEecCCCc
Confidence 4789999999986655 2334 689999987777631 1121 23455 9997 8999888888766
Q ss_pred cEEEEeCCCCeEEEEe------cCCCEeEEEEeCC--------CceeEEEEEcCCCcEEEE----EeeCCcce-e-eEEE
Q 012410 209 IYKVFDLKNYTMLYSI------SDKHVQEIKIRSS--------SHVPLKILSIEDGTVLKV----FYHLLHRN-K-KVDF 268 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl------~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~t----l~~~~~~~-~-~V~F 268 (464)
.|.+||..++..+..+ ....+++++++|. .++.|..||.++++.... ..+..... . .++|
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 7889998877665555 2466888999882 446899999998874332 12222233 3 8999
Q ss_pred EccCCCeEEEE-eCCCeEEEEECCCCcEEEEcccC---------------CCceEEEEEcCCCcEEEEEe--CCeEEEEe
Q 012410 269 IEQFNEKLLVK-QENENLQILDVRNAELMEVSRTE---------------FMTPSAFIFLYENQLFLTFR--NRTVAVWN 330 (464)
Q Consensus 269 ~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh---------------~~~v~sv~FspdgqllaS~s--D~TIklWd 330 (464)
.|. ++.|.++ ..++.|+.||.. |+ +.++.++ ...|..++|+|+|+++++-+ +++|+.||
T Consensus 275 ~p~-~g~lyv~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 275 YFV-DSNFYMSDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp ETT-TTEEEEEETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred eCC-CCEEEEEeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 994 4667665 588999999954 44 3444443 35799999999999988864 78999999
Q ss_pred C-CCceEEEeccCC---------------CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 012410 331 F-RGELVTSFEDHL---------------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 331 ~-~Ge~l~tl~gH~---------------~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi 388 (464)
. +|+ +.++.|+. .+ .+.|+++|||.++++-.. .+.|+..++
T Consensus 352 ~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~-----P~giavd~~g~lyVad~~-----------n~~Ir~i~~ 408 (409)
T 3hrp_A 352 ILDGY-VSTVAGQVDVASQIDGTPLEATFNY-----PYDICYDGEGGYWIAEAW-----------GKAIRKYAV 408 (409)
T ss_dssp TTTTE-EEEEEECTTCBSCCCBSTTTCCBSS-----EEEEEECSSSEEEEEEST-----------TCEEEEEEE
T ss_pred CCCCE-EEEEeCCCCCCCcCCCChhceEeCC-----ceEEEEcCCCCEEEEECC-----------CCeEEEEEe
Confidence 6 676 56777761 22 579999999999988654 778877664
No 214
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.43 E-value=2.5e-11 Score=133.01 Aligned_cols=270 Identities=11% Similarity=0.088 Sum_probs=176.9
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCc----------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~----------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++.|.+.+.++.+.++|..||+.+-........ .-+++++ .+..+++ ++.+ ..+.-+
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v----~~~d------g~l~Al 136 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYV----GVLD------GRLEAI 136 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEE----ECTT------SEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEE----EccC------CEEEEE
Confidence 4778888888999999999999999887543221 1123333 3455555 2333 467778
Q ss_pred EeccCCCCCcccceeeccc---cCceEEEEeCC---CCcEEEEec-----CCCcEEEEeCCCCeEEEEecC---C-----
Q 012410 167 YIRRGKPDSGFALFESESL---KWPGFVEFDDV---NGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD---K----- 227 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~---~~~~~VaFs~p---dGk~LaSgs-----~D~tiKlWdl~tg~~l~tl~~---~----- 227 (464)
|.++|+. +|+.... .+...+..+ | +|++++.++ .|+.|..||.+||+++-++.. .
T Consensus 137 Da~TG~~-----~W~~~~~~~~~~~~~~~~s-P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 137 DAKTGQR-----AWSVDTRADHKRSYTITGA-PRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp ETTTCCE-----EEEEECCSCTTSCCBCCSC-CEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred ECCCCCE-----eeeecCcCCCCCCccccCC-cEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 8889986 3332211 000111111 2 777776543 378999999999999865531 0
Q ss_pred ------------------------CEe-EEEEeC--------CCce-------------------eEEEEEcCCCcEEEE
Q 012410 228 ------------------------HVQ-EIKIRS--------SSHV-------------------PLKILSIEDGTVLKV 255 (464)
Q Consensus 228 ------------------------~V~-~Vafs~--------s~d~-------------------tIklWdi~tG~~l~t 255 (464)
.+| .+++.| ..+. .|.-||.+||+.+..
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 111 455654 2332 499999999999998
Q ss_pred EeeCCcceee------EEEE--ccCCC---eEEEEeCCCeEEEEECCCCcEEEEcc-cCCCc------------------
Q 012410 256 FYHLLHRNKK------VDFI--EQFNE---KLLVKQENENLQILDVRNAELMEVSR-TEFMT------------------ 305 (464)
Q Consensus 256 l~~~~~~~~~------V~F~--~~~~~---~lla~s~D~tIkIWDv~tg~~l~~l~-gh~~~------------------ 305 (464)
++...|..+. +.+. +.++. .+++++.|+.+.++|..||+++.... .+..+
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~ 370 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA 370 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence 8732222111 1111 11221 35567899999999999999883211 00000
Q ss_pred --------------------eEEEEEcCCCcEEEEEe-------------------------------------------
Q 012410 306 --------------------PSAFIFLYENQLFLTFR------------------------------------------- 322 (464)
Q Consensus 306 --------------------v~sv~FspdgqllaS~s------------------------------------------- 322 (464)
-..++|+|+.+++....
T Consensus 371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~ 450 (689)
T 1yiq_A 371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA 450 (689)
T ss_dssp CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence 01268999988887653
Q ss_pred ---CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 323 ---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 323 ---D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+++|..||. +|+.+-+++.+..+ +.-.++..|.+++.|+. ||.|+.||..||+.|.+++
T Consensus 451 ~~~~g~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~gt~-----------dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 451 KSWSGKLIAWDPVKQQAAWEVPYVTIF------NGGTLSTAGNLVFEGSA-----------DGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEE
T ss_pred CCcceeEEEEECCCCCeEeEccCCCCc------cCccceECCCEEEEECC-----------CCcEEEEECCCCccceeee
Confidence 278999999 79999988877654 33467778889999886 9999999999999999997
Q ss_pred cCC
Q 012410 399 ATN 401 (464)
Q Consensus 399 gh~ 401 (464)
...
T Consensus 514 ~~~ 516 (689)
T 1yiq_A 514 AAS 516 (689)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 215
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=8.8e-12 Score=128.82 Aligned_cols=282 Identities=10% Similarity=0.050 Sum_probs=184.7
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---- 205 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs---- 205 (464)
+..-.+...|+|+.+.++. .. +..+. .++.+-|..+++..+..+ .+ .-|+ ++|| |||+.|..++
T Consensus 33 ~~~~~~~~~pd~~~vyV~~--~~--~~~~~-~~V~ViD~~t~~v~~~I~---vG--~~P~-va~s-pDG~~lyVan~~~~ 100 (386)
T 3sjl_D 33 EPRILEAPAPDARRVYVND--PA--HFAAV-TQQFVIDGEAGRVIGMID---GG--FLPN-PVVA-DDGSFIAHASTVFS 100 (386)
T ss_dssp CCCBCCCCCCCTTEEEEEE--CG--GGCSS-EEEEEEETTTTEEEEEEE---EC--SSCE-EEEC-TTSSCEEEEEEEEE
T ss_pred ccceeeccCCCCCEEEEEc--Cc--ccCCC-CEEEEEECCCCeEEEEEE---CC--CCCc-EEEC-CCCCEEEEEccccc
Confidence 3333456678999888844 22 11111 478888988888764333 22 3365 9997 8999886554
Q ss_pred ------CCCcEEEEeCCCCeEEEEec-C--------CCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCC
Q 012410 206 ------QDSIYKVFDLKNYTMLYSIS-D--------KHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 206 ------~D~tiKlWdl~tg~~l~tl~-~--------~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
.+.+|.+||.++++.+.++. . ..-+.++|+|+ .+.+|.++|+++++.+.++.-.
T Consensus 101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~- 179 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP- 179 (386)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-
Confidence 36789999999999998875 1 14567899884 2578999999999999999632
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCC-CcEEEEcccCCC----ceE-EEEEc-CCCcEEEEEeCCeEEEEeCCC
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFM----TPS-AFIFL-YENQLFLTFRNRTVAVWNFRG 333 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~t-g~~l~~l~gh~~----~v~-sv~Fs-pdgqllaS~sD~TIklWd~~G 333 (464)
.. ...+ |.....+++.+.||++-..++.+ ++...+...+++ .+. ..+|. +||+++..+.+++|.+-|+.+
T Consensus 180 -g~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 180 -DC-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS 256 (386)
T ss_dssp -SE-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred -Cc-ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCC
Confidence 11 1222 43345566778899999999886 665433222322 111 13554 899876644489999999965
Q ss_pred ce---EEEec---c---CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCC
Q 012410 334 EL---VTSFE---D---HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 404 (464)
Q Consensus 334 e~---l~tl~---g---H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~ 404 (464)
+- +..+. . -..|.+.- ...++++|+++.|.-.-....++. -.....+|-+-|+.|++.++++.--.
T Consensus 257 ~~~~v~~~~~~~~~~~~~~g~~p~g-~q~~a~~~~~~~lyV~~~~~~~~~-hk~~~~~V~viD~~t~kv~~~i~vg~--- 331 (386)
T 3sjl_D 257 GDAKFLPAVEALTEAERADGWRPGG-WQQVAYHRALDRIYLLVDQRDEWR-HKTASRFVVVLDAKTGERLAKFEMGH--- 331 (386)
T ss_dssp SSCEECCCEESSCHHHHHTTEEECS-SSCEEEETTTTEEEEEEEECCTTC-TTSCEEEEEEEETTTCCEEEEEEEEE---
T ss_pred CcceeecceeccccccccccccCCC-cceeeECCCCCeEEEEeccccccc-cCCCCCEEEEEECCCCeEEEEEECCC---
Confidence 43 22222 0 01222211 235889999999887642100000 00113689999999999999985432
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEeeC-CCcEEeccC
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNR-HGLVHVWSN 464 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs~-DgtVrlWd~ 464 (464)
.+++|+|||||+ .||+.+. +++|.+.|.
T Consensus 332 --------------------------------~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 332 --------------------------------EIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp --------------------------------EECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred --------------------------------CcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 678999999997 8888765 899998873
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=3e-10 Score=109.72 Aligned_cols=218 Identities=11% Similarity=0.068 Sum_probs=154.3
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec
Q 012410 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (464)
Q Consensus 126 ~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs 205 (464)
..+..+-.+..|+|+++.|..+. ... ..+..|+..+|+. ..+.. -..|..++|+ |||+++++.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d--~~~-------~~i~~~d~~~~~~----~~~~~--~~~~~~i~~~-~dG~l~v~~- 71 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVD--IPA-------KKVCRWDSFTKQV----QRVTM--DAPVSSVALR-QSGGYVATI- 71 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEE--TTT-------TEEEEEETTTCCE----EEEEC--SSCEEEEEEB-TTSSEEEEE-
T ss_pred ccCCccccCCeEECCCCEEEEEE--CCC-------CEEEEEECCCCcE----EEEeC--CCceEEEEEC-CCCCEEEEE-
Confidence 34566788999999777776633 222 5788889777764 22332 2567799997 899977754
Q ss_pred CCCcEEEEeCCCCeEEEEe--c----CCCEeEEEEeCCCc-----------------eeEEEEEcC-CCcEEEEEeeCCc
Q 012410 206 QDSIYKVFDLKNYTMLYSI--S----DKHVQEIKIRSSSH-----------------VPLKILSIE-DGTVLKVFYHLLH 261 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl--~----~~~V~~Vafs~s~d-----------------~tIklWdi~-tG~~l~tl~~~~~ 261 (464)
+..|.+||.++++..... . ...+.++++.|+.. ..-+||.+. +|+......+ ..
T Consensus 72 -~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-~~ 149 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-VD 149 (297)
T ss_dssp -TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-ES
T ss_pred -CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-cc
Confidence 567999999998864322 1 13478899977421 224666665 3555443333 24
Q ss_pred ceeeEEEEccCCCeEEE-EeCCCeEEEEEC--CCCcEE-----EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-
Q 012410 262 RNKKVDFIEQFNEKLLV-KQENENLQILDV--RNAELM-----EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF- 331 (464)
Q Consensus 262 ~~~~V~F~~~~~~~lla-~s~D~tIkIWDv--~tg~~l-----~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~- 331 (464)
....++|+|+ +..|.+ .+.++.|.+||+ .+|++. ..+..+...|..+++.++|++.++.. ++.|..||.
T Consensus 150 ~pngi~~spd-g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 150 ISNGLDWSLD-HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp BEEEEEECTT-SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred cccceEEcCC-CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 4578999984 555655 457899999997 677642 23344456789999999999999988 889999999
Q ss_pred CCceEEEeccCCCCcCCCCeeEEEEC-CCCCEEEEEec
Q 012410 332 RGELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYCK 368 (464)
Q Consensus 332 ~Ge~l~tl~gH~~~~~~~~v~svafS-pDg~~LaSgs~ 368 (464)
+|+++.++..+... +.+++|+ ||++.|.-.+.
T Consensus 229 tG~~~~~i~~p~~~-----~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 229 TGKRLQTVKLPVDK-----TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TCCEEEEEECSSSB-----EEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEEECCCCC-----ceEEEEeCCCCCEEEEEcC
Confidence 59999999887655 7899998 99998766654
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.41 E-value=6.7e-11 Score=129.34 Aligned_cols=274 Identities=14% Similarity=0.099 Sum_probs=177.4
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCC----------ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPD----------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~----------~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++.|.+.+.++.+.++|..||+.+-....... ...+++++ ++..+.+. +.+ ..+...
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~----~~d------g~l~al 143 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVG----AWD------GRLIAL 143 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEE----CTT------SEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEE----cCC------CEEEEE
Confidence 477778888889999999999999988755321 11234544 34555552 333 467777
Q ss_pred EeccCCCCCcccce-eecc-ccCceEEEEeCCCCcEEEEec-----CCCcEEEEeCCCCeEEEEecC--CC---------
Q 012410 167 YIRRGKPDSGFALF-ESES-LKWPGFVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD--KH--------- 228 (464)
Q Consensus 167 ~i~~G~~~~~~~l~-~~~~-~~~~~~VaFs~pdGk~LaSgs-----~D~tiKlWdl~tg~~l~tl~~--~~--------- 228 (464)
|.++|+..-.+... .... .....+... .+|++++.++ .|+.|..+|.+||+.+-++.. ..
T Consensus 144 D~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 144 DAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp ETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred ECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 88888863222211 0000 000112222 2666666444 279999999999999866541 00
Q ss_pred ----------------------E-eEEEEeCC--------Cc-------------------eeEEEEEcCCCcEEEEEee
Q 012410 229 ----------------------V-QEIKIRSS--------SH-------------------VPLKILSIEDGTVLKVFYH 258 (464)
Q Consensus 229 ----------------------V-~~Vafs~s--------~d-------------------~tIklWdi~tG~~l~tl~~ 258 (464)
+ ..+++.|. .+ .+|..+|.+||+.+..++.
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 1 13455442 22 1499999999999998873
Q ss_pred CCcc------eeeEEEEc--cCC---CeEEEEeCCCeEEEEECCCCcEEEEcccCC-Cce--------------------
Q 012410 259 LLHR------NKKVDFIE--QFN---EKLLVKQENENLQILDVRNAELMEVSRTEF-MTP-------------------- 306 (464)
Q Consensus 259 ~~~~------~~~V~F~~--~~~---~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v-------------------- 306 (464)
..|. .....+.. .++ ..+++++.++.|.++|..||+.+....-.. .+.
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 381 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSK 381 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTS
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCC
Confidence 2121 11112111 123 345567899999999999999886443110 000
Q ss_pred --------------EEEEEcCCCcEEEEEe-C-------------------------------------------CeEEE
Q 012410 307 --------------SAFIFLYENQLFLTFR-N-------------------------------------------RTVAV 328 (464)
Q Consensus 307 --------------~sv~FspdgqllaS~s-D-------------------------------------------~TIkl 328 (464)
.+++|+|+++++.... + ++|..
T Consensus 382 ~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A 461 (677)
T 1kb0_A 382 PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA 461 (677)
T ss_dssp CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred ccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence 1568999988887754 3 78999
Q ss_pred EeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 329 WNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 329 Wd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
||. +|+.+-+++.... +++..++++|.+++.++. ||++++||..||+++.++.-..
T Consensus 462 ~D~~tG~~~W~~~~~~~------~~~g~~~~~g~~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 462 WDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTA-----------DGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred EeCCCCcEEeecCCCCC------CcCcceEeCCCEEEEECC-----------CCcEEEEECCCCceeeeeeCCC
Confidence 999 7999888864432 345668888999998876 9999999999999999997544
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.40 E-value=7.4e-11 Score=114.24 Aligned_cols=216 Identities=9% Similarity=0.111 Sum_probs=152.0
Q ss_pred ccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeE-EEEecCCCEeEEEEeCC--------CceeEEEEEcCCCcEEE
Q 012410 185 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKIRSS--------SHVPLKILSIEDGTVLK 254 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~-l~tl~~~~V~~Vafs~s--------~d~tIklWdi~tG~~l~ 254 (464)
..|+...+|+ |+|+ ++.++..++.|..|+. +|+. .+......+..++++++ .+..|.+|+.+ |+...
T Consensus 44 ~~~~egp~~~-~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 44 ATWSEGPAWW-EAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp CSSEEEEEEE-GGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CcCccCCeEe-CCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence 3566789997 8998 7778888999999998 5653 23344667899999874 23578888876 77543
Q ss_pred EEeeC----CcceeeEEEEccCCCeEEEE-----eC-------------CCeEEEEECCCCcEEEEcccCCCceEEEEEc
Q 012410 255 VFYHL----LHRNKKVDFIEQFNEKLLVK-----QE-------------NENLQILDVRNAELMEVSRTEFMTPSAFIFL 312 (464)
Q Consensus 255 tl~~~----~~~~~~V~F~~~~~~~lla~-----s~-------------D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs 312 (464)
..... ......+++.++ +.+.++ .. .+.|..+|..+|+..... +...+..++|+
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp EECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred EEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence 22211 123467888774 566663 21 356888888888876654 45678999999
Q ss_pred CCCcEEEEEe-C------CeEEEEeCC-CceEE---EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 012410 313 YENQLFLTFR-N------RTVAVWNFR-GELVT---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 381 (464)
Q Consensus 313 pdgqllaS~s-D------~TIklWd~~-Ge~l~---tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dg 381 (464)
|||+.|..+. + +.|.+||+. +. +. .+..-.... ...+++.+||++.++. . +
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~----pdgi~~d~~G~lwv~~-~-----------~- 258 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGL----PDGFCVDRGGWLWSSS-G-----------T- 258 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSC----CCSEEECTTSCEEECC-S-----------S-
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCC----CCeEEECCCCCEEEec-C-----------C-
Confidence 9999665554 5 789999984 33 32 222111111 3468999999977654 2 4
Q ss_pred eEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 382 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 382 tIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
.|.+||. +|+.+.++..+. .+.+++|+||++.|+.++.++..++
T Consensus 259 gv~~~~~-~g~~~~~~~~~~-----------------------------------~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 259 GVCVFDS-DGQLLGHIPTPG-----------------------------------TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEEEECT-TSCEEEEEECSS-----------------------------------CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred cEEEECC-CCCEEEEEECCC-----------------------------------ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4999997 899999886543 4678999999999999998887776
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=7e-11 Score=123.42 Aligned_cols=267 Identities=12% Similarity=0.015 Sum_probs=181.1
Q ss_pred CeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccce-ee--cc
Q 012410 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF-ES--ES 184 (464)
Q Consensus 108 g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~-~~--~~ 184 (464)
+.+.++|..+++.+..+..+. .. .+++||||+.|.+++.+.+....+-...++.+.|..+++..+..++- .. ..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 789999999999999997654 33 89999999999986643211000111258889999998876543321 00 01
Q ss_pred ccCceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEecCCCE---e------EEEEeCCCceeEEEEEcCCCcEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSISDKHV---Q------EIKIRSSSHVPLKILSIEDGTVL 253 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~~~~V---~------~Vafs~s~d~tIklWdi~tG~~l 253 (464)
...|..++|| |||+.|..+.. +++|-|.|+++++.+.++.-... . -++++ .|+.+-+.+..+|+..
T Consensus 176 g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~--~dG~~~~V~~~~~~v~ 252 (426)
T 3c75_H 176 GTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNC--RDGSLARVDFADGETK 252 (426)
T ss_dssp SCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE--TTSSEEEEECCTTCCE
T ss_pred CCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEc--CCCCEEEEECCCCcEE
Confidence 1356789997 89998887664 68999999999999988873221 1 13344 3556666677777776
Q ss_pred EEE----eeCCcce-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEE-----cccC----CCce---EEEEEcCCCc
Q 012410 254 KVF----YHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-----SRTE----FMTP---SAFIFLYENQ 316 (464)
Q Consensus 254 ~tl----~~~~~~~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~-----l~gh----~~~v---~sv~Fspdgq 316 (464)
.+. .-....+ ..+.|.+ +++.++.....+++.+.|+.++..... .... ...+ ..++|+|||+
T Consensus 253 ~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 253 VTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp EEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred EEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 432 1000111 2355666 466777777788999999876653211 0000 0111 1368999977
Q ss_pred EEEEEe-----------CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeE
Q 012410 317 LFLTFR-----------NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 317 llaS~s-----------D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~-~LaSgs~~~~~~~~~~s~DgtI 383 (464)
.+.... +++|-+.|. +++.++++.--.. .+.++|+|||+ +|++... .+++|
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~------P~gia~spDg~~~lyv~n~----------~s~~V 395 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE------IDSINVSQDAEPLLYALSA----------GTQTL 395 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCEEEEEET----------TTTEE
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC------cCeEEEccCCCEEEEEEcC----------CCCeE
Confidence 555442 247999999 7999998874332 46899999999 8888873 28999
Q ss_pred EEEeCCCCeEEEEE
Q 012410 384 NVSSILTGKCLAKI 397 (464)
Q Consensus 384 klWdi~tG~cl~tl 397 (464)
-++|+.|++.++++
T Consensus 396 sVID~~t~kvv~tI 409 (426)
T 3c75_H 396 HIYDAATGEELRSV 409 (426)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCCEEEEe
Confidence 99999999999998
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=138.78 Aligned_cols=179 Identities=12% Similarity=0.047 Sum_probs=105.7
Q ss_pred CCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeE--------EEEeCCCceeEEEEEcCCCcEEEEEeeCCc-ce-eeE
Q 012410 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQE--------IKIRSSSHVPLKILSIEDGTVLKVFYHLLH-RN-KKV 266 (464)
Q Consensus 197 dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~--------Vafs~s~d~tIklWdi~tG~~l~tl~~~~~-~~-~~V 266 (464)
+|..|+.++.|+++..||.++|+++.++....+.+ +-+..+.|+.|..||.+||+++..++.+.. .+ .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 45688889999999999999999987665333222 222335789999999999999887763211 11 111
Q ss_pred EEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC
Q 012410 267 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL 344 (464)
Q Consensus 267 ~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~ 344 (464)
.+. .++.+++++.|++|..||..+|+++..+..+. ...++|++..+++++ |++|..||. +|+++-+++.+..
T Consensus 88 ~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~ 161 (369)
T 2hz6_A 88 CRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY 161 (369)
T ss_dssp CC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE
T ss_pred eEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc
Confidence 111 24677778899999999999999988776653 245678888888888 999999999 7998776653321
Q ss_pred CcCCCCeeEEEECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 345 WHPDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 345 ~~~~~~v~svafSpDg---~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.+.++++++ ..++.++. ||.|..||..+|+.+.+++-
T Consensus 162 -------~~~~~~~~~~~~~~v~~~~~-----------dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 162 -------AASLPEDDVDYKMSHFVSNG-----------DGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp -------CCBCCCCCTTCCCCEEEEET-----------SCEEEEECTTTCCEEEEEEC
T ss_pred -------cCccccCCccccceEEEECC-----------CCEEEEEECCCCcEEEEecC
Confidence 123345542 34455554 89999999999999988763
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.37 E-value=2.2e-09 Score=106.10 Aligned_cols=289 Identities=11% Similarity=0.129 Sum_probs=182.2
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCC--------CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSP--------DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~--------~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
.++.|.+...++.+.++|..+|+.+-...... ...+.+...-.+ ..+.+.+ .+ ..+...|.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~----~~------g~l~a~d~ 120 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG-GHVYIGS----EK------AQVYALNT 120 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET-TEEEEEE----TT------SEEEEEET
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC-CEEEEEc----CC------CEEEEEEC
Confidence 46777888889999999999999987775532 222333222233 4455522 33 46777888
Q ss_pred ccCCCCCcccceeeccccCce-EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-CCEe------EEE------E
Q 012410 169 RRGKPDSGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQ------EIK------I 234 (464)
Q Consensus 169 ~~G~~~~~~~l~~~~~~~~~~-~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~~V~------~Va------f 234 (464)
++|+. +|+...-..+. ..... +| .|..++.|+.+..+|.++|+.+..... ..+. ..+ +
T Consensus 121 ~tG~~-----~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~ 192 (376)
T 3q7m_A 121 SDGTV-----AWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAV 192 (376)
T ss_dssp TTCCE-----EEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEE
T ss_pred CCCCE-----EEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEE
Confidence 88886 33322111111 23332 55 555578899999999999998865542 1111 111 1
Q ss_pred eCCCceeEEEEEcCCCcEEEEEeeCCcc----------e-eeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC
Q 012410 235 RSSSHVPLKILSIEDGTVLKVFYHLLHR----------N-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 303 (464)
Q Consensus 235 s~s~d~tIklWdi~tG~~l~tl~~~~~~----------~-~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~ 303 (464)
-...++.|..+|.++|+.+..+...... + ..... .++.+.+++.++.|..+|..+|+.+-.....
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~- 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALDLRSGQIMWKRELG- 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEETTTCCEEEEECCC-
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEECCCCcEEeeccCC-
Confidence 2245778999999999999887632110 1 11111 2478888889999999999999987654422
Q ss_pred CceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 012410 304 MTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 382 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~Dgt 382 (464)
...+.+. .++.+++...++.|..+|. +|+.+-..+...... +.+..+ .+..|..++. +|.
T Consensus 269 -~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~----~~~~~~--~~~~l~v~~~-----------~g~ 329 (376)
T 3q7m_A 269 -SVNDFIV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL----LTSPVL--YNGNLVVGDS-----------EGY 329 (376)
T ss_dssp -CEEEEEE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC----CCCCEE--ETTEEEEECT-----------TSE
T ss_pred -CCCCceE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc----ccCCEE--ECCEEEEEeC-----------CCe
Confidence 2333332 3555555555999999999 799887766322111 122222 2456666654 899
Q ss_pred EEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEE-EEEEcCCCCEEEEeeCCCcEEe
Q 012410 383 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT-SLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~-slafspDg~~LaSgs~DgtVrl 461 (464)
|..+|..+|+.+..++.... .+. +.+. .+..|+.++.||.|..
T Consensus 330 l~~~d~~tG~~~~~~~~~~~----------------------------------~~~~~~~~--~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 330 LHWINVEDGRFVAQQKVDSS----------------------------------GFQTEPVA--ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp EEEEETTTCCEEEEEECCTT----------------------------------CBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred EEEEECCCCcEEEEEecCCC----------------------------------cceeCCEE--ECCEEEEEeCCCEEEE
Confidence 99999999999988765322 111 1111 2567899999999998
Q ss_pred cc
Q 012410 462 WS 463 (464)
Q Consensus 462 Wd 463 (464)
|+
T Consensus 374 ~~ 375 (376)
T 3q7m_A 374 IT 375 (376)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.34 E-value=1.5e-09 Score=106.71 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=148.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCc
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~t 209 (464)
.+..+.+|+|+++.|..+. .. + ..+.+++..+|+.. .+... ..+.+++|+ |||+++++. .+ .
T Consensus 49 ~~~egp~~~~~~~~l~~~d--~~-~------~~i~~~d~~~~~~~----~~~~~--~~v~~i~~~-~dg~l~v~~-~~-g 110 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFN--IL-E------RELHELHLASGRKT----VHALP--FMGSALAKI-SDSKQLIAS-DD-G 110 (326)
T ss_dssp SBEEEEEEETTTTEEEEEE--GG-G------TEEEEEETTTTEEE----EEECS--SCEEEEEEE-ETTEEEEEE-TT-E
T ss_pred CCCcCCeEeCCCCEEEEEE--CC-C------CEEEEEECCCCcEE----EEECC--CcceEEEEe-CCCeEEEEE-CC-C
Confidence 4567788999877776643 22 2 57888887776542 22222 456689997 899988865 34 4
Q ss_pred EEEEeCCCCeEEEEec------CCCEeEEEEeCCCc------------eeEEEEEcCCCcEEEEEeeCCcceeeEEEEcc
Q 012410 210 YKVFDLKNYTMLYSIS------DKHVQEIKIRSSSH------------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 210 iKlWdl~tg~~l~tl~------~~~V~~Vafs~s~d------------~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~ 271 (464)
|.+||.++|+...... ...+.+++++|+.. ....||.+.+|+......+ ......++|+|+
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~-~~~~~~i~~s~d 189 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPD 189 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTT
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCC-CcccCCeEEcCC
Confidence 9999999998643222 13588999987421 1245555546765443332 234578999884
Q ss_pred CCCeEEEE-eCCCeEEEEECC--CC-c-----EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCCCceEEEecc
Q 012410 272 FNEKLLVK-QENENLQILDVR--NA-E-----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED 341 (464)
Q Consensus 272 ~~~~lla~-s~D~tIkIWDv~--tg-~-----~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~tl~g 341 (464)
+..+.+. +.++.|.+||+. +| + .+..+.++...+..+++.++|.+.++.. ++.|.+||.+|+.+.++..
T Consensus 190 -g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~ 268 (326)
T 2ghs_A 190 -GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEV 268 (326)
T ss_dssp -SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEEC
T ss_pred -CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEEC
Confidence 5556554 578999999986 77 3 2334444556788999999999998887 7899999999999999887
Q ss_pred CCCCcCCCCeeEEEEC-CCCCEEEEEec
Q 012410 342 HLLWHPDCNTNNIYIT-SDQDLIISYCK 368 (464)
Q Consensus 342 H~~~~~~~~v~svafS-pDg~~LaSgs~ 368 (464)
+... +.+++|+ ||++.|..++.
T Consensus 269 ~~~~-----~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 269 PGKQ-----TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SCSB-----EEEEEEESTTSCEEEEEEB
T ss_pred CCCC-----cEEEEEecCCCCEEEEEec
Confidence 7655 7899998 99887755543
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=3.3e-11 Score=124.47 Aligned_cols=178 Identities=9% Similarity=-0.006 Sum_probs=127.5
Q ss_pred ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
...++++ +.+.+|++|+.| .++||++++..-.. .. ...+ .+ -.++ ... .. +..|+
T Consensus 40 ~nlLais-~~~gll~a~~~~-~l~v~~~~~l~~~~--~~---------~~~~-------~~-~~~~--~~l-p~-V~~l~ 94 (388)
T 1xip_A 40 LQNLDIS-NSKSLFVAASGS-KAVVGELQLLRDHI--TS---------DSTP-------LT-FKWE--KEI-PD-VIFVC 94 (388)
T ss_dssp CBCEEEE-TTTTEEEEEETT-EEEEEEHHHHHHHH--HS---------SSCC-------CC-CSEE--EEC-TT-EEEEE
T ss_pred ccEEEEc-CCCCEEEEeCCC-EEEEEEhhHhhhhh--cc---------cccc-------cc-ceEE--eeC-CC-eeEEE
Confidence 3479998 788899999998 47789976432100 00 0000 11 0011 111 13 78899
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCC
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW 345 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~ 345 (464)
| ++..|+++ .|+.|++||+.+.........|...+.++.+.+.. +|... ||+|.+||+ ++++.+ +...
T Consensus 95 f---d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~ 164 (388)
T 1xip_A 95 F---HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQN 164 (388)
T ss_dssp E---ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEES
T ss_pred E---CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCC
Confidence 9 34555556 89999999999887666677777778888887653 66666 999999999 587754 3333
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEE------c---cCCCCCCcccccCCCC
Q 012410 346 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKI------N---ATNCSPKVDDELGSSS 414 (464)
Q Consensus 346 ~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl------~---gh~~~~~~~~~~~~~~ 414 (464)
|.+++|||+| ++.|+. ||+|++|+..+++| .++| . +|..
T Consensus 165 -----Vs~v~WSpkG--~~vg~~-----------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~------------ 214 (388)
T 1xip_A 165 -----VTSFDVTNSQ--LAVLLK-----------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY------------ 214 (388)
T ss_dssp -----EEEEEECSSE--EEEEET-----------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS------------
T ss_pred -----ceEEEEcCCc--eEEEEc-----------CCcEEEEcCCCccccccceecCCcccccccCCCe------------
Confidence 8999999999 566776 99999999988998 8888 2 2333
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEE
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaS 452 (464)
.|.+|.|.++++.|++
T Consensus 215 ----------------------~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 215 ----------------------SPLSVTILSPQDFLAV 230 (388)
T ss_dssp ----------------------EEEEEEESSSSEEEEE
T ss_pred ----------------------eEEEEEEecCCeEEEE
Confidence 8999999999999886
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.33 E-value=5.7e-11 Score=121.64 Aligned_cols=265 Identities=6% Similarity=-0.053 Sum_probs=170.9
Q ss_pred eEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeec---cc
Q 012410 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE---SL 185 (464)
Q Consensus 109 ~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~---~~ 185 (464)
.+.+.|..+++.+.++..+.. . .++|+|||+.+.++..+.+....+-...++.++|..+++..++.++-... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 788899999999999977654 3 79999999999996654322111122379999999999987655432000 11
Q ss_pred cCceEEEEeCCCCcEEEEecC--CCcEEE--EeCCCCeEEEEecCCCEeEE-------EEeCCCceeEEEEEcCC-----
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQ--DSIYKV--FDLKNYTMLYSISDKHVQEI-------KIRSSSHVPLKILSIED----- 249 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~--D~tiKl--Wdl~tg~~l~tl~~~~V~~V-------afs~s~d~tIklWdi~t----- 249 (464)
..|..++|| |||+.|..+.. +.++.| +|+++ +.++.......+ -+.-+.|+.+-+-|+++
T Consensus 124 ~~P~~ia~S-pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 124 PRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCcceEEEc-CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 346789997 99998887764 467888 99987 455531110000 01123455666667776
Q ss_pred CcEEEEEe--eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc--EEEEcc-------cCCCceEE---EEEcCCC
Q 012410 250 GTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSR-------TEFMTPSA---FIFLYEN 315 (464)
Q Consensus 250 G~~l~tl~--~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~--~l~~l~-------gh~~~v~s---v~Fspdg 315 (464)
|+.+.+.. -....... + .+ +++.++..+. +++.+.|+.+++ .+..+. .+...+.. ++|+|||
T Consensus 200 ~~v~~~~t~~i~vg~~P~-~-~~-~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg 275 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA-Q-AN-YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp EECCCCSCTTSCBCSCCE-E-ET-TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred CeEEEEeeeeeeCCCCcc-c-cc-cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence 54432100 00000011 3 45 3567777666 999999987643 233221 11111222 6899998
Q ss_pred cEEEE-Ee-C-C-------eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE-EEEEe-cCCCccccccCCCCe
Q 012410 316 QLFLT-FR-N-R-------TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYC-KAEPEDQWMEGSAGS 382 (464)
Q Consensus 316 qllaS-~s-D-~-------TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~-LaSgs-~~~~~~~~~~s~Dgt 382 (464)
+.+.. .. + + .+.++|. +++.++++.-... .+.++|+|||++ +++.. . +++
T Consensus 276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~------p~gi~~s~Dg~~l~va~~~~-----------~~~ 338 (368)
T 1mda_H 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD------SDAIIAAQDGASDNYANSAG-----------TEV 338 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE------ECEEEECCSSSCEEEEEETT-----------TTE
T ss_pred CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC------cceEEECCCCCEEEEEccCC-----------CCe
Confidence 76554 33 3 2 5669999 7999998875542 468999999984 45443 3 899
Q ss_pred EEEEeCCCCeEEEEEccCC
Q 012410 383 INVSSILTGKCLAKINATN 401 (464)
Q Consensus 383 IklWdi~tG~cl~tl~gh~ 401 (464)
|-++|+.|++.++++....
T Consensus 339 VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 339 LDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EEEEESSSCEEEEECCCCS
T ss_pred EEEEECCCCcEEEEEECCC
Confidence 9999999999999998765
No 225
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.33 E-value=2.1e-10 Score=109.75 Aligned_cols=283 Identities=10% Similarity=0.034 Sum_probs=193.6
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~ 176 (464)
.++.|.++..++.+.+|| .+|+.+..... +...+.+++..++|...+. + . . +..++ ++|+..-.
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~l~v~-----t-~------~-l~~~d-~~g~~~~~ 92 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDGTIYFG-----S-D------K-VYAIN-PDGTEKWR 92 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTTEECCS-----S-C------E-EEEEC-CCGGGGGG
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCCcEEEe-----c-C------c-EEEEC-CCCcEEEE
Confidence 456677777788888898 89998877644 5667888888888864433 2 1 2 44445 35554322
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeC-------CCceeEEEEEc
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRS-------SSHVPLKILSI 247 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~-------s~d~tIklWdi 247 (464)
+.... .. ....++. +|.+ ..++.++.+..+|.+ |+.+.... ...+.++++.+ ..++.|..+|.
T Consensus 93 ~~~~~-~~---~~~~~~~--~~~l-~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 93 FDTKK-AI---VSDFTIF--EDIL-YVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINP 164 (330)
T ss_dssp SCC---------CCEEEE--TTEE-EEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECT
T ss_pred EECCC-Cc---ccCceEE--CCEE-EEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECC
Confidence 22111 11 1134443 6654 447778899999988 88776544 23344455543 34578999999
Q ss_pred CCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEE
Q 012410 248 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVA 327 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIk 327 (464)
+ |+.+..+......+.++.+.+ ++.+.+++ +.|..+| .+|+.+.........+.++++.++|.+.+...++.|.
T Consensus 165 ~-g~~~~~~~~~~~~~~~~~~d~--~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~ 238 (330)
T 3hxj_A 165 D-GTEKWRFKTNDAITSAASIGK--DGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLY 238 (330)
T ss_dssp T-SCEEEEEECSSCCCSCCEECT--TCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEE
T ss_pred C-CCEeEEEecCCCceeeeEEcC--CCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEE
Confidence 8 998887774334456665533 47788877 8899999 8888777666555678888899999988877677888
Q ss_pred EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcc
Q 012410 328 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 407 (464)
Q Consensus 328 lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~ 407 (464)
.+|.+|+.+..+...... +.++++.++|.+.++. . +|.|..+|. +|+.+..+.-...
T Consensus 239 ~~~~~g~~~~~~~~~~~~-----~~~~~~~~~g~l~v~t-~-----------~ggl~~~d~-~g~~~~~~~~~~~----- 295 (330)
T 3hxj_A 239 AINPDGTEKWRFKTGKRI-----ESSPVIGNTDTIYFGS-Y-----------DGHLYAINP-DGTEKWNFETGSW----- 295 (330)
T ss_dssp EECTTSCEEEEEECSSCC-----CSCCEECTTSCEEEEC-T-----------TCEEEEECT-TSCEEEEEECSSC-----
T ss_pred EECCCCCEeEEeeCCCCc-----cccceEcCCCeEEEec-C-----------CCCEEEECC-CCcEEEEEEcCCc-----
Confidence 888889988877755443 3457777888877653 2 778999995 8998887754332
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEec
Q 012410 408 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 462 (464)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlW 462 (464)
.+.+++.++||+ |+-|+.+|.+++-
T Consensus 296 -----------------------------~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 296 -----------------------------IIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp -----------------------------CCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred -----------------------------cccceEEcCCCE-EEEEcCCCeEEEE
Confidence 566788889987 5668899998864
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=6.9e-10 Score=107.42 Aligned_cols=223 Identities=11% Similarity=0.077 Sum_probs=149.4
Q ss_pred ccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCC
Q 012410 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (464)
Q Consensus 118 g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pd 197 (464)
+..+..+. ....+..+.+|+|+|+.|..+. ... ..+..|+. +|+. ..+.. ....+..++|+ ++
T Consensus 34 ~~~~~~l~-~~~~~~egp~~~~~g~~l~~~d--~~~-------~~i~~~~~-~g~~----~~~~~-~~~~~~gl~~d-~d 96 (305)
T 3dr2_A 34 DARLLTLY-DQATWSEGPAWWEAQRTLVWSD--LVG-------RRVLGWRE-DGTV----DVLLD-ATAFTNGNAVD-AQ 96 (305)
T ss_dssp TCCCEEEE-CCCSSEEEEEEEGGGTEEEEEE--TTT-------TEEEEEET-TSCE----EEEEE-SCSCEEEEEEC-TT
T ss_pred CCceEEEe-cCCcCccCCeEeCCCCEEEEEE--CCC-------CEEEEEeC-CCCE----EEEeC-CCCccceeeEC-CC
Confidence 33444442 2456788999999999666533 223 46777774 5553 22332 23556789997 89
Q ss_pred CcEEEEecCCCcEEEEeCCCCeEEEEec------CCCEeEEEEeCCC-------------------------ceeEEEEE
Q 012410 198 GKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKIRSSS-------------------------HVPLKILS 246 (464)
Q Consensus 198 Gk~LaSgs~D~tiKlWdl~tg~~l~tl~------~~~V~~Vafs~s~-------------------------d~tIklWd 246 (464)
|+++++...++.|.+||.. |+...... .+.+.++++.|+. ...|..+|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9988877777889999986 76432211 1346678886531 24577777
Q ss_pred cCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCC------CeEEEEECCCCcEE--EEc-ccCCCceEEEEEcCCCcE
Q 012410 247 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELM--EVS-RTEFMTPSAFIFLYENQL 317 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D------~tIkIWDv~tg~~l--~~l-~gh~~~v~sv~Fspdgql 317 (464)
.++|+..... + ......++|+|+ +..|.++..+ +.|.+||+..+.+. +.+ ......+..+++.++|++
T Consensus 176 ~~~g~~~~~~-~-~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 176 PDGSPLQRMA-D-LDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SSSCCCEEEE-E-ESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCCCcEEEEe-c-CCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 7778765543 2 244578999884 5556666543 79999998766521 121 112345678899999997
Q ss_pred EEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 318 FLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 318 laS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
.++..+ .|.+||.+|+++..+..+. . +.+++|+||++.|..++.
T Consensus 253 wv~~~~-gv~~~~~~g~~~~~~~~~~-~-----~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 253 WSSSGT-GVCVFDSDGQLLGHIPTPG-T-----ASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EECCSS-EEEEECTTSCEEEEEECSS-C-----CCEEEECTTSCEEEEEET
T ss_pred EEecCC-cEEEECCCCCEEEEEECCC-c-----eeEEEEeCCCCEEEEEcC
Confidence 776645 4999999999999887665 2 678999999998877653
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.29 E-value=3e-10 Score=118.63 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=176.9
Q ss_pred eCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----------CCC
Q 012410 139 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDS 208 (464)
Q Consensus 139 ~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs----------~D~ 208 (464)
|++..+.++. ..+ .++. .++.+-|..+++..+.++ .+ ..| .++|| |||+.|.-+. .++
T Consensus 82 ~~~~~vyV~n--~~~--~~~~-~~VsVID~~t~~vv~~I~---vG--~~P-gia~S-pDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQD--PAH--FAAI-TQQFVIDGSTGRILGMTD---GG--FLP-HPVAA-EDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEE--CTT--TCSS-EEEEEEETTTTEEEEEEE---EC--SSC-EEEEC-TTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEC--CCc--CCCC-CeEEEEECCCCEEEEEEE---CC--CCC-ceEEC-CCCCEEEEEeccccccccCCCCC
Confidence 4566655533 221 1223 578888988888764433 22 457 89997 8999877665 367
Q ss_pred cEEEEeCCCCeEEEEec-C--------CCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEE
Q 012410 209 IYKVFDLKNYTMLYSIS-D--------KHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFI 269 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~-~--------~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~ 269 (464)
+|-++|..+++.+.++. . ..-..++|+|+ .+.+|-+.|+++++.+.++.-. . .+...
T Consensus 150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--g--~~~~~ 225 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--D--CYHIF 225 (426)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--S--EEEEE
T ss_pred EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC--C--ceeec
Confidence 99999999999998775 2 23457788874 2568999999999999988731 1 12333
Q ss_pred ccCCCeEEEEeCCCeEEEEECCCCcEEEE----cccCCCce-EEEEEcCCCcEEEEEe-CCeEEEEeCCCceEE---Eec
Q 012410 270 EQFNEKLLVKQENENLQILDVRNAELMEV----SRTEFMTP-SAFIFLYENQLFLTFR-NRTVAVWNFRGELVT---SFE 340 (464)
Q Consensus 270 ~~~~~~lla~s~D~tIkIWDv~tg~~l~~----l~gh~~~v-~sv~FspdgqllaS~s-D~TIklWd~~Ge~l~---tl~ 340 (464)
|..+..+++-+.|+++-+.|..+++...+ +.-....+ ..+.|+|++..++-.+ .++|-+-|..+.-+. +++
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~ 305 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIE 305 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeee
Confidence 42223444556788888888866665532 11111111 1356899988877777 889999998543322 211
Q ss_pred ---cC---CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCC
Q 012410 341 ---DH---LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 414 (464)
Q Consensus 341 ---gH---~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~ 414 (464)
.. ..|.+. ....++|+|||+.|........+.. -...+++|-+.|+.|++.+++|..-.
T Consensus 306 ~~~~~~i~~g~~p~-g~~~va~s~dg~rlyVa~~~~~~gt-hk~~s~~VsVID~~T~kvv~~I~vg~------------- 370 (426)
T 3c75_H 306 ALTEAERADDWRPG-GWQQTAYHRQSDRIYLLVDQRDEWK-HKAASRFVVVLNAETGERINKIELGH------------- 370 (426)
T ss_dssp SSCTTTGGGTEEEC-SSSCEEEEGGGTEEEEEEEECCTTC-TTSCEEEEEEEETTTCCEEEEEEEEE-------------
T ss_pred eccccccccccccC-CceeeEEcCCCCEEEEEeccccccc-ccCCCCEEEEEECCCCeEEEEEECCC-------------
Confidence 00 011111 0234899999997766532000000 00014689999999999999996432
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCC-EEEEee-CCCcEEeccC
Q 012410 415 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWSN 464 (464)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~-~LaSgs-~DgtVrlWd~ 464 (464)
..++++|+|||+ .||+.+ .+++|-++|.
T Consensus 371 ----------------------~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 371 ----------------------EIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp ----------------------EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred ----------------------CcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 467899999999 999999 5999999873
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=2.1e-09 Score=117.77 Aligned_cols=228 Identities=13% Similarity=0.129 Sum_probs=152.7
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC----CEeE-----------EEEeCC-----CceeEEEEEcCCC
Q 012410 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----HVQE-----------IKIRSS-----SHVPLKILSIEDG 250 (464)
Q Consensus 191 VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~----~V~~-----------Vafs~s-----~d~tIklWdi~tG 250 (464)
++.. +| .|..++.|+.+..+|.+||+.+-+.... .... |-+..+ .++.|..||.+||
T Consensus 117 ~~~~--~g-~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 117 VAVW--KG-KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp CEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred cEEE--CC-EEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCC
Confidence 4553 45 5566788999999999999998544321 1111 111111 3688999999999
Q ss_pred cEEEEEeeCC------------------------------cce-eeEEEEccCCCeEEEEeCCCe---------------
Q 012410 251 TVLKVFYHLL------------------------------HRN-KKVDFIEQFNEKLLVKQENEN--------------- 284 (464)
Q Consensus 251 ~~l~tl~~~~------------------------------~~~-~~V~F~~~~~~~lla~s~D~t--------------- 284 (464)
+++.++.... ..+ ..++|.|. ++.+.++..+++
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~ 272 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNL 272 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCce
Confidence 9998876210 011 25778774 567777776653
Q ss_pred ----EEEEECCCCcEEEEccc--CCC-------ceEEEEEcCCCc---EEEEEe-CCeEEEEeC-CCceEEEec------
Q 012410 285 ----LQILDVRNAELMEVSRT--EFM-------TPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFE------ 340 (464)
Q Consensus 285 ----IkIWDv~tg~~l~~l~g--h~~-------~v~sv~Fspdgq---llaS~s-D~TIklWd~-~Ge~l~tl~------ 340 (464)
|..||+.||+.+-.++. |.. .+.......+|+ .++.++ |+.+.++|. +|+++...+
T Consensus 273 y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 273 FLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSW 352 (689)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccc
Confidence 99999999999875543 321 122222334776 788888 999999999 799984321
Q ss_pred ----------------------------------cCCCCcCCCCeeEEEECCCCCEEEEEecCCCc--------------
Q 012410 341 ----------------------------------DHLLWHPDCNTNNIYITSDQDLIISYCKAEPE-------------- 372 (464)
Q Consensus 341 ----------------------------------gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~-------------- 372 (464)
|..+| ..++|+|+..++...+...+.
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w------~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~ 426 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDW------QPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPF 426 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCS------SCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCC------CcceECCCCCEEEEeccccceeeeecccccccccc
Confidence 12223 248999999999876431000
Q ss_pred -cccccC-------------------CCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 373 -DQWMEG-------------------SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 373 -~~~~~s-------------------~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
.....+ .+|+|+.||+.||+.+.+++.+..
T Consensus 427 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~------------------------------ 476 (689)
T 1yiq_A 427 KSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI------------------------------ 476 (689)
T ss_dssp TTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS------------------------------
T ss_pred ccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC------------------------------
Confidence 000011 158999999999999999876652
Q ss_pred ccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 433 EALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 433 ~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
+++-.++..|..++.|+.||.|+.||
T Consensus 477 -----~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 477 -----FNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp -----CCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred -----ccCccceECCCEEEEECCCCcEEEEE
Confidence 23335667889999999999999998
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=3.5e-09 Score=115.81 Aligned_cols=236 Identities=11% Similarity=0.099 Sum_probs=157.1
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC-------CEe-------E-EEEeCC-----CceeEEEEEcCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------HVQ-------E-IKIRSS-----SHVPLKILSIED 249 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~-------~V~-------~-Vafs~s-----~d~tIklWdi~t 249 (464)
.+++. ++ .|..++.|+.+..+|.+||+.+-++... .+. . |-+... .++.|..+|.+|
T Consensus 123 ~~a~~--~~-~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 123 GVALW--KG-KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp CCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred CceEE--CC-EEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCC
Confidence 45563 45 5556788999999999999998665421 111 1 111111 268999999999
Q ss_pred CcEEEEEeeCCcc-------------------------------e-eeEEEEccCCCeEEEEeCCC--------------
Q 012410 250 GTVLKVFYHLLHR-------------------------------N-KKVDFIEQFNEKLLVKQENE-------------- 283 (464)
Q Consensus 250 G~~l~tl~~~~~~-------------------------------~-~~V~F~~~~~~~lla~s~D~-------------- 283 (464)
|+.+.++...... + ..++|.|. ++.+.++..++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~gd 278 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKGGD 278 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCC
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCCCccCCC
Confidence 9999888631111 0 24677774 56777766553
Q ss_pred -----eEEEEECCCCcEEEEccc--CC-------CceEEEEEcCCC---cEEEEEe-CCeEEEEeC-CCceEEEeccC-C
Q 012410 284 -----NLQILDVRNAELMEVSRT--EF-------MTPSAFIFLYEN---QLFLTFR-NRTVAVWNF-RGELVTSFEDH-L 343 (464)
Q Consensus 284 -----tIkIWDv~tg~~l~~l~g--h~-------~~v~sv~Fspdg---qllaS~s-D~TIklWd~-~Ge~l~tl~gH-~ 343 (464)
+|..+|..||+.+-.++. |. ..+.-+.+..|| ..++.++ ++.|.++|. +|+++..++-. .
T Consensus 279 ~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 358 (677)
T 1kb0_A 279 NLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV 358 (677)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred CeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccccc
Confidence 599999999998865442 32 234444455688 6888888 999999999 79998766411 1
Q ss_pred CCcC----CCC-e------------------------eEEEECCCCCEEEEEecCCCcc---------------------
Q 012410 344 LWHP----DCN-T------------------------NNIYITSDQDLIISYCKAEPED--------------------- 373 (464)
Q Consensus 344 ~~~~----~~~-v------------------------~svafSpDg~~LaSgs~~~~~~--------------------- 373 (464)
.|.. .|. + ..++|+|++.++...+..-+.+
T Consensus 359 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp SSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred CcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence 1100 000 0 2578999999998765310000
Q ss_pred ccc-----------cCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 374 QWM-----------EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 374 ~~~-----------~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
+.. ....++|..||+.||+.+.+++... .+++..
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-----------------------------------~~~~g~ 483 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-----------------------------------PWNGGT 483 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-----------------------------------SCCCCE
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-----------------------------------CCcCcc
Confidence 000 0124899999999999998886432 344556
Q ss_pred EcCCCCEEEEeeCCCcEEeccC
Q 012410 443 YDEERNEIYTGNRHGLVHVWSN 464 (464)
Q Consensus 443 fspDg~~LaSgs~DgtVrlWd~ 464 (464)
++++|..++.|+.||.|++||.
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEET
T ss_pred eEeCCCEEEEECCCCcEEEEEC
Confidence 7788999999999999999983
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.18 E-value=2.8e-12 Score=129.46 Aligned_cols=139 Identities=11% Similarity=0.025 Sum_probs=76.7
Q ss_pred CCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCC-ceE-EEEEcCC
Q 012410 237 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-TPS-AFIFLYE 314 (464)
Q Consensus 237 s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~-~v~-sv~Fspd 314 (464)
+.|+.|..||.+||+++.+++. ..+.+..+... +..+++++.|++|..||..+|+.+.....+.. .+. +.+++.+
T Consensus 16 s~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~ 92 (369)
T 2hz6_A 16 TLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSD 92 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC---
T ss_pred cCCCEEEEEECCCCCEEEEecC--CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecC
Confidence 5678999999999999998875 44444444442 33445567999999999999998776654421 111 1112234
Q ss_pred CcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 012410 315 NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 392 (464)
Q Consensus 315 gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~ 392 (464)
+ .+++++ |++|..||. +|+++.++..|.. +.++|++..|+.++. |++|..||..||+
T Consensus 93 ~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---------~~~~p~~~~v~~~~~-----------dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 93 G-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---------DSLSPSTSLLYLGRT-----------EYTITMYDTKTRE 151 (369)
T ss_dssp ---CCCCEEEEEEEEECCC-------------------------------EEEEEE-----------EEEEECCCSSSSS
T ss_pred C-EEEEEeCCCEEEEEECCCCcEEEEecCCCc---------ccccccCCEEEEEec-----------CCEEEEEECCCCC
Confidence 4 556666 999999999 6999988876641 356789999999886 8999999999999
Q ss_pred EEEEEcc
Q 012410 393 CLAKINA 399 (464)
Q Consensus 393 cl~tl~g 399 (464)
.+.++..
T Consensus 152 ~~W~~~~ 158 (369)
T 2hz6_A 152 LRWNATY 158 (369)
T ss_dssp CCCEEEE
T ss_pred EEEeEec
Confidence 8877653
No 231
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=1e-09 Score=113.32 Aligned_cols=178 Identities=16% Similarity=0.229 Sum_probs=123.0
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCC-----CCcc-cceeeccccCceEEEEeCCCCcEEEEe
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-----DSGF-ALFESESLKWPGFVEFDDVNGKVLTYS 204 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~-----~~~~-~l~~~~~~~~~~~VaFs~pdGk~LaSg 204 (464)
-+..++.++....+++++ .+ .+.+|++...+- ...+ +.....+-+ +..|+| ||++|+.+
T Consensus 39 ~~nlLais~~~gll~a~~----~~-------~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~ 103 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAAS----GS-------KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS 103 (388)
T ss_dssp CCBCEEEETTTTEEEEEE----TT-------EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE
T ss_pred cccEEEEcCCCCEEEEeC----CC-------EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE
Confidence 478899999999888844 33 466677643330 0001 112222334 668999 78999988
Q ss_pred cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCe
Q 012410 205 AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN 284 (464)
Q Consensus 205 s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~t 284 (464)
.++.|++||+.+-....+++ .+ ...+..+.+.+ ..+++...||+
T Consensus 104 -~~~~l~v~dv~sl~~~~~~~-----------------------------~~---~~~v~~i~~~~---p~~av~~~dG~ 147 (388)
T 1xip_A 104 -TRNALYSLDLEELSEFRTVT-----------------------------SF---EKPVFQLKNVN---NTLVILNSVND 147 (388)
T ss_dssp -ESSEEEEEESSSTTCEEEEE-----------------------------EC---SSCEEEEEECS---SEEEEEETTSE
T ss_pred -cCCcEEEEEchhhhccCccc-----------------------------ee---ecceeeEEecC---CCEEEEECCCC
Confidence 88999999987644322211 00 01223333433 23777889999
Q ss_pred EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-Cce--EEEe------c---cCCCCcCCCCe
Q 012410 285 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSF------E---DHLLWHPDCNT 351 (464)
Q Consensus 285 IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~~-Ge~--l~tl------~---gH~~~~~~~~v 351 (464)
|.+||+.++++.. +...|.+++|||+| ++.+. |++|++|+.+ +++ .+++ + +|... |
T Consensus 148 L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~-----V 216 (388)
T 1xip_A 148 LSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS-----P 216 (388)
T ss_dssp EEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE-----E
T ss_pred EEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCee-----E
Confidence 9999999998865 34579999999999 45566 9999999995 555 7788 4 46554 8
Q ss_pred eEEEECCCCCEEEEEecCC
Q 012410 352 NNIYITSDQDLIISYCKAE 370 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~ 370 (464)
.+|.|.+++++|+++...+
T Consensus 217 ~sI~wl~~~~flv~y~~~~ 235 (388)
T 1xip_A 217 LSVTILSPQDFLAVFGNVI 235 (388)
T ss_dssp EEEEESSSSEEEEEEECCC
T ss_pred EEEEEecCCeEEEEEcCCC
Confidence 9999999999999998643
No 232
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=4.9e-08 Score=106.49 Aligned_cols=267 Identities=13% Similarity=0.178 Sum_probs=169.4
Q ss_pred ccceeehhccCCeEEeeecccccEeeEeecCCCc----------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEE
Q 012410 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (464)
Q Consensus 97 ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~----------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~ 166 (464)
.++.|.+.+.++.+.++|..||+.+-........ .-+++++. +..+++ ++.+ ..+.-.
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v----~~~d------g~l~al 132 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYV----GTLD------GRLIAL 132 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEE----ECTT------SEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CCEEEE----EcCC------CEEEEE
Confidence 4778888888999999999999999887543211 11233332 344554 2333 466777
Q ss_pred EeccCCCCCcccceeeccc------cCceEEEEeCCCCcEEEEecC-----CCcEEEEeCCCCeEEEEecC---C-----
Q 012410 167 YIRRGKPDSGFALFESESL------KWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD---K----- 227 (464)
Q Consensus 167 ~i~~G~~~~~~~l~~~~~~------~~~~~VaFs~pdGk~LaSgs~-----D~tiKlWdl~tg~~l~tl~~---~----- 227 (464)
|..+|+. +|+.... ....+... .+|++++..+. ++.|..+|.+||+++-++.. .
T Consensus 133 D~~tG~~-----~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 205 (668)
T 1kv9_A 133 DAKTGKA-----IWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY 205 (668)
T ss_dssp ETTTCCE-----EEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred ECCCCCE-----eeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence 8888886 3332210 00011112 16766664432 68999999999999866531 0
Q ss_pred ------------------------CE-eEEEEeC--------CCce-------------------eEEEEEcCCCcEEEE
Q 012410 228 ------------------------HV-QEIKIRS--------SSHV-------------------PLKILSIEDGTVLKV 255 (464)
Q Consensus 228 ------------------------~V-~~Vafs~--------s~d~-------------------tIklWdi~tG~~l~t 255 (464)
.+ ..+++.| ..+. .|.-+|.+||+.+..
T Consensus 206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~ 285 (668)
T 1kv9_A 206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH 285 (668)
T ss_dssp SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE
Confidence 01 1245543 1222 499999999999998
Q ss_pred EeeCCcceee-------E--EEEccCCCe----EEEEeCCCeEEEEECCCCcEEEEcccCC-----------Cce-----
Q 012410 256 FYHLLHRNKK-------V--DFIEQFNEK----LLVKQENENLQILDVRNAELMEVSRTEF-----------MTP----- 306 (464)
Q Consensus 256 l~~~~~~~~~-------V--~F~~~~~~~----lla~s~D~tIkIWDv~tg~~l~~l~gh~-----------~~v----- 306 (464)
++...|..+. + ++.. +++ +++++.|+.+.++|..||+++....-.. ..+
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~ 363 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPG 363 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTT
T ss_pred eecCCCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccc
Confidence 8732122111 1 1111 243 5667899999999999999883221110 000
Q ss_pred --------------------EEEEEcCCCcEEEE------------------------------------Ee-CCeEEEE
Q 012410 307 --------------------SAFIFLYENQLFLT------------------------------------FR-NRTVAVW 329 (464)
Q Consensus 307 --------------------~sv~FspdgqllaS------------------------------------~s-D~TIklW 329 (464)
..++|+|+..++.. .. +++|..|
T Consensus 364 ~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~ 443 (668)
T 1kv9_A 364 VRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAW 443 (668)
T ss_dssp TTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEE
T ss_pred ccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEE
Confidence 12578888766542 12 4889999
Q ss_pred eC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 330 NF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 330 d~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
|. +|+.+-+.+.+..+ +...++..|.+++.++. |+.++.||..||+.+..++...
T Consensus 444 D~~tG~~~W~~~~~~~~------~~~~~~t~gg~vf~g~~-----------dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 444 DPVKQKAAWKVPYPTHW------NGGTLSTAGNLVFQGTA-----------AGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp ETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred eCCCCcEEEEccCCCCC------cCceeEeCCCEEEEECC-----------cccchhhhhhcChhheEecCCC
Confidence 98 79998877755443 33456667888888876 9999999999999999987654
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.97 E-value=4.5e-09 Score=100.48 Aligned_cols=224 Identities=14% Similarity=0.048 Sum_probs=144.6
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEE
Q 012410 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (464)
Q Consensus 133 ~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKl 212 (464)
.+.....+|...+. +.+ ..+..++ .+|+..-.+.+-. ..+.++.++ ++|.+.+ ++.+ +..
T Consensus 23 ~~~~~d~~g~l~v~-----t~~------~~l~~~d-~~g~~~~~~~~~~----~~~~~~~~~-~~g~l~v-~t~~--l~~ 82 (330)
T 3hxj_A 23 SSPILAKNGTIYLG-----SSN------KNLYAIN-TDGSVKWFFKSGE----IIECRPSIG-KDGTIYF-GSDK--VYA 82 (330)
T ss_dssp CCCEECTTSCEECS-----STT------TTTEEEC-TTSCEEESSCGGG----EEEECCEET-TTTEECC-SSCE--EEE
T ss_pred cCceEccCCeEEEE-----cCC------CEEEEEC-CCCcEEEEEecCC----CcccceEEe-cCCcEEE-ecCc--EEE
Confidence 34455566654432 323 3566667 7777532222111 112356674 6887665 4444 777
Q ss_pred EeCCCCeEEEEec--CCCEeEEEEe------CCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCe
Q 012410 213 FDLKNYTMLYSIS--DKHVQEIKIR------SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN 284 (464)
Q Consensus 213 Wdl~tg~~l~tl~--~~~V~~Vafs------~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~t 284 (464)
+|. +|+.+..+. .......++. ...++.|..+|.+ |+.+..+......+.++...+ ++.+.+++.++.
T Consensus 83 ~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~--~g~l~vgt~~~~ 158 (330)
T 3hxj_A 83 INP-DGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE--DGTIYVGSNDNY 158 (330)
T ss_dssp ECC-CGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT--TSCEEEECTTSE
T ss_pred ECC-CCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC--CCEEEEEcCCCE
Confidence 885 666543222 1111222222 1356788999998 988877764333445555433 478999999999
Q ss_pred EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 012410 285 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLII 364 (464)
Q Consensus 285 IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~La 364 (464)
|..+|.. |+.+.....+...+.++++.++|.++++. +.|..+|.+|+.+..+..+... +.++++.+||.+.+
T Consensus 159 l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~-----~~~~~~~~~g~l~v 230 (330)
T 3hxj_A 159 LYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWT-----VTRPAISEDGTIYV 230 (330)
T ss_dssp EEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCC-----CSCCEECTTSCEEE
T ss_pred EEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcc-----eeceEECCCCeEEE
Confidence 9999988 88876665555567777788899988877 8899999779888777755443 67889999998887
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 365 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
... ++.|..+| .+|+.+..+....
T Consensus 231 ~t~------------~~gl~~~~-~~g~~~~~~~~~~ 254 (330)
T 3hxj_A 231 TSL------------DGHLYAIN-PDGTEKWRFKTGK 254 (330)
T ss_dssp EET------------TTEEEEEC-TTSCEEEEEECSS
T ss_pred EcC------------CCeEEEEC-CCCCEeEEeeCCC
Confidence 642 67788888 5888887775543
No 234
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.96 E-value=2e-07 Score=100.01 Aligned_cols=269 Identities=14% Similarity=0.092 Sum_probs=165.2
Q ss_pred ccceeehhcc-CCeEEeeec-ccccEeeEeecCCCc----------eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEE
Q 012410 97 ARDIVFALAH-SGVCAAFSR-ETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (464)
Q Consensus 97 ag~~l~~l~~-~g~~~~~~~-~~g~~l~~ln~~~~~----------~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~ 164 (464)
.++.|.+.+. ++.+.++|. .+|+.+-........ ..+++++ .+..+.+. ..+ ..+.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~----~~d------g~l~ 128 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKK----QAN------GHLL 128 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEE----CTT------SEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEE----eCC------CEEE
Confidence 4677777777 899999998 899999877543221 1123343 24455552 223 4566
Q ss_pred EEEeccCCCCCcccceeecccc----C-c-eEEEEeCCCCcEEEEecC-----CCcEEEEeCCCCeEEEEecC-CC----
Q 012410 165 IEYIRRGKPDSGFALFESESLK----W-P-GFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD-KH---- 228 (464)
Q Consensus 165 l~~i~~G~~~~~~~l~~~~~~~----~-~-~~VaFs~pdGk~LaSgs~-----D~tiKlWdl~tg~~l~tl~~-~~---- 228 (464)
-.|.++|+. +|+...-. + + .+... .+|++++.++. |+.|..+|.+||+.+-++.. ..
T Consensus 129 alD~~tG~~-----~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 129 ALDAKTGKI-----NWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp EEETTTCCE-----EEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred EEECCCCCE-----EEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 667788886 33321111 0 0 01112 16777665543 89999999999999865541 11
Q ss_pred ----------------------------------Ee-EEEEeC--------C------------Cc----eeEEEEEcCC
Q 012410 229 ----------------------------------VQ-EIKIRS--------S------------SH----VPLKILSIED 249 (464)
Q Consensus 229 ----------------------------------V~-~Vafs~--------s------------~d----~tIklWdi~t 249 (464)
+| .+++.+ . .| ..|.-+|.+|
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 00 122221 1 12 2599999999
Q ss_pred CcEEEEEeeCCcc------eeeEEEEcc-CCC---e-EEEEeCCCeEEEEECCCCcEEEEcccCC------------Cce
Q 012410 250 GTVLKVFYHLLHR------NKKVDFIEQ-FNE---K-LLVKQENENLQILDVRNAELMEVSRTEF------------MTP 306 (464)
Q Consensus 250 G~~l~tl~~~~~~------~~~V~F~~~-~~~---~-lla~s~D~tIkIWDv~tg~~l~~l~gh~------------~~v 306 (464)
|+.+..++...|. ..+...... .++ + ++.++.++.+.++|..+|+.+-...-.. ..+
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p 361 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTP 361 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSE
T ss_pred CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCce
Confidence 9999988732121 122222211 024 3 3457789999999999999876432110 011
Q ss_pred ---------------------------EEEEEcCCCcEEEEEe-------------------------------------
Q 012410 307 ---------------------------SAFIFLYENQLFLTFR------------------------------------- 322 (464)
Q Consensus 307 ---------------------------~sv~FspdgqllaS~s------------------------------------- 322 (464)
.+++|+|++.+|....
T Consensus 362 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~ 441 (571)
T 2ad6_A 362 VRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKK 441 (571)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSC
T ss_pred ecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCC
Confidence 2357888877765542
Q ss_pred -CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 323 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 323 -D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
++.|..||. +|+.+-+++.... +++..+...+.++..++. |+.|..+|..||+++.+++..
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFA------AWGGTLYTKGGLVWYATL-----------DGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCCCEEEEecCCCC------ccceeEEECCCEEEEEcC-----------CCeEEEEECCCCCEEEEEeCC
Confidence 478999998 7999887764432 223333445566666765 999999999999999998754
Q ss_pred C
Q 012410 401 N 401 (464)
Q Consensus 401 ~ 401 (464)
.
T Consensus 505 ~ 505 (571)
T 2ad6_A 505 S 505 (571)
T ss_dssp S
T ss_pred C
Confidence 3
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.90 E-value=5.6e-07 Score=88.77 Aligned_cols=248 Identities=9% Similarity=0.055 Sum_probs=152.7
Q ss_pred eccceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCC
Q 012410 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (464)
Q Consensus 96 ~ag~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~ 175 (464)
..++.|.+...+|.+.++|..+|+.+-..... .....+.... +| .+.+ ++.+ ..+...|.++|+..
T Consensus 101 ~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~p~~~-~~-~v~v----~~~~------g~l~~~d~~tG~~~- 166 (376)
T 3q7m_A 101 VSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA-GEALSRPVVS-DG-LVLI----HTSN------GQLQALNEADGAVK- 166 (376)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECS-SCCCSCCEEE-TT-EEEE----ECTT------SEEEEEETTTCCEE-
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC-CceEcCCEEE-CC-EEEE----EcCC------CeEEEEECCCCcEE-
Confidence 34778888888999999999999998777543 2222222222 34 4444 2333 46777788888863
Q ss_pred cccceeeccccC------ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCC------------E-eE-----
Q 012410 176 GFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH------------V-QE----- 231 (464)
Q Consensus 176 ~~~l~~~~~~~~------~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~------------V-~~----- 231 (464)
|....-.. ....... +| .|..++.++.+..+|.++|+.+....... + ..
T Consensus 167 ----W~~~~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (376)
T 3q7m_A 167 ----WTVNLDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN 239 (376)
T ss_dssp ----EEEECCC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET
T ss_pred ----EEEeCCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC
Confidence 33211000 0123332 45 45557889999999999999986554110 0 00
Q ss_pred -EEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc-CCCceEEE
Q 012410 232 -IKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAF 309 (464)
Q Consensus 232 -Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g-h~~~v~sv 309 (464)
..+-.+.++.|..+|.++|+.+..... .....+.. .++.+.++..++.|..+|..+|+.+-.... ....+.+.
T Consensus 240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 314 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP 314 (376)
T ss_dssp TEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred CEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence 011124577899999999999987652 22233332 358899999999999999999998765441 11222222
Q ss_pred EEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 310 IFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 310 ~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
+. .++.+++...++.|.++|. +|+.+..++-....+. ....+ .+| .|..++. ||+|..+|
T Consensus 315 ~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~----~~~~~-~~~-~l~v~~~-----------~G~l~~~~ 375 (376)
T 3q7m_A 315 VL-YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ----TEPVA-ADG-KLLIQAK-----------DGTVYSIT 375 (376)
T ss_dssp EE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC----SCCEE-ETT-EEEEEBT-----------TSCEEEEE
T ss_pred EE-ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce----eCCEE-ECC-EEEEEeC-----------CCEEEEEe
Confidence 22 3555554444999999998 7999887765333211 11222 244 4445554 89998886
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.89 E-value=9.9e-09 Score=105.01 Aligned_cols=247 Identities=9% Similarity=0.064 Sum_probs=151.7
Q ss_pred eEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec----------CCCcEEEEeCCCCeEEEEec-C----
Q 012410 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS-D---- 226 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs----------~D~tiKlWdl~tg~~l~tl~-~---- 226 (464)
++.+-|..+++..++++ .+ ..| .++|| |||+.|..+. .|++|.+||+.+++.+.++. .
T Consensus 47 ~vsvID~~t~~v~~~i~---vG--~~P-~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL---GA--FLS-LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEE---EC--TTC-EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEe---CC--CCC-ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 66677888888764433 22 346 79997 8999888775 37899999999999999875 2
Q ss_pred ----CCEeEEEEeCCC----------ceeEEE--EEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEEC
Q 012410 227 ----KHVQEIKIRSSS----------HVPLKI--LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 290 (464)
Q Consensus 227 ----~~V~~Vafs~s~----------d~tIkl--Wdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv 290 (464)
..-..++|+|+. ...|.+ +|+++ ++++.-. .. +.+.|.....+++.+.|+.+-+-|+
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~--~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC--FHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--SC--CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--Cc--eEEccCCCeEEEEEcCCCCEEEEEC
Confidence 245688998852 345777 88877 5555411 11 1123422233344568888888888
Q ss_pred CC-----CcEEEE----cccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCc---eEEEecc------CCCCcCCCCee
Q 012410 291 RN-----AELMEV----SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE---LVTSFED------HLLWHPDCNTN 352 (464)
Q Consensus 291 ~t-----g~~l~~----l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge---~l~tl~g------H~~~~~~~~v~ 352 (464)
.+ ++.+.+ ..-. ..+. ++.+++.++.... ++|.+-|+.+. .+.++.- ...|.+.. ..
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg-~~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g-~~ 267 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCS-SQAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG-FQ 267 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBC-SCCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS-SS
T ss_pred ccccccCCeEEEEeeeeeeCC-CCcc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc-ce
Confidence 87 543211 1111 1233 3555555555555 88888898432 3332211 11221110 11
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccccc
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG 432 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (464)
.++|+|||+.|.-+....+ .......++ +.++|+.|++.+++|....
T Consensus 268 ~v~~s~dg~~lyV~~~~~~-~~~~~~~~~-~~ViD~~t~~vv~~i~vg~------------------------------- 314 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHS-RSCLAAAEN-TSSVTASVGQTSGPISNGH------------------------------- 314 (368)
T ss_dssp CEEEETTTTEEEEEEEECS-SCTTSCEEE-EEEEESSSCCEEECCEEEE-------------------------------
T ss_pred eeEEcCCCCEEEEEecccc-CcccccCCC-EEEEECCCCeEEEEEECCC-------------------------------
Confidence 2789999998875421000 000000134 4499999999999986553
Q ss_pred ccccCEEEEEEcCCCCE-EEEee-CCCcEEeccC
Q 012410 433 EALEDITSLFYDEERNE-IYTGN-RHGLVHVWSN 464 (464)
Q Consensus 433 ~~l~~V~slafspDg~~-LaSgs-~DgtVrlWd~ 464 (464)
..+.++|+|||+. +++.. .+++|.++|.
T Consensus 315 ----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 315 ----DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp ----EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ----CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 5678999999985 55666 5999999984
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.87 E-value=3.2e-08 Score=107.28 Aligned_cols=253 Identities=10% Similarity=0.098 Sum_probs=163.6
Q ss_pred ccceeehhccCC-eEEeeecccccEeeEeecCCCceEEEEEE-e-eCCCEEEEEEeecC---CCCcccce-----eeEEE
Q 012410 97 ARDIVFALAHSG-VCAAFSRETNRRICFLNVSPDEVIRSLFY-N-KNNDSLITVSVYAS---DNFSSLKC-----RSTKI 165 (464)
Q Consensus 97 ag~~l~~l~~~g-~~~~~~~~~g~~l~~ln~~~~~~i~Sv~f-s-~~g~~l~svSa~~s---ddfs~L~~-----~ti~l 165 (464)
-|..|+..+.++ .++.-|..+.+....+......-...+++ + |+++++..++.|.- .|-..|.. .++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 567777766544 68888889999888554433344788888 5 99999988543321 01111111 56777
Q ss_pred EEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC---------------cEEEEeCCCCeEEEEec-CCCE
Q 012410 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---------------IYKVFDLKNYTMLYSIS-DKHV 229 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~---------------tiKlWdl~tg~~l~tl~-~~~V 229 (464)
.|.++.+. .++-.+-+.|..+++| |||+.+.+.+.+. .|.|.|.+..+. .+. ++..
T Consensus 180 ID~~t~~v-----~~qI~Vgg~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk~~ 251 (595)
T 1fwx_A 180 VDADKWEV-----AWQVLVSGNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AIAAGDYQ 251 (595)
T ss_dssp EETTTTEE-----EEEEEESSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HHHHTCSE
T ss_pred EECCCCeE-----EEEEEeCCCccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--eccCCCee
Confidence 77777665 3443222457789997 8999999888764 344554332211 011 1111
Q ss_pred eEEEEeCCCceeEEEEEcCC--CcE-EEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCc-----------
Q 012410 230 QEIKIRSSSHVPLKILSIED--GTV-LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE----------- 294 (464)
Q Consensus 230 ~~Vafs~s~d~tIklWdi~t--G~~-l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~----------- 294 (464)
+ + ..|.+.|..+ |+. +.++.-. ..-..|+|+| ++.++++++ .+.+|-++|+.+.+
T Consensus 252 ~-i-------~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 252 E-L-------NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp E-E-------TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred E-E-------CcEEEEeCcccCCceeEEEEecC-CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 1 1 3599999998 766 6666521 2346899999 466677765 88999999999763
Q ss_pred -EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C----------CceEEEeccCCCCcCCCCeeEEEECCCCC
Q 012410 295 -LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R----------GELVTSFEDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 295 -~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~----------Ge~l~tl~gH~~~~~~~~v~svafSpDg~ 361 (464)
......-- ..|+-++|+|||...++.- |++|-+||+ . .+.+.++.-|...-..+.-..+.++|||+
T Consensus 322 ~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 322 AVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp GEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred ceEEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC
Confidence 23333222 4699999999996666666 999999998 4 46788888765420000012346799999
Q ss_pred EEEEEec
Q 012410 362 LIISYCK 368 (464)
Q Consensus 362 ~LaSgs~ 368 (464)
+|++.++
T Consensus 401 ~l~~~Nk 407 (595)
T 1fwx_A 401 WLVCLSK 407 (595)
T ss_dssp EEEEEES
T ss_pred EEEEcCC
Confidence 9999997
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.87 E-value=7.3e-07 Score=87.63 Aligned_cols=188 Identities=10% Similarity=0.012 Sum_probs=135.8
Q ss_pred ceEEEEeCCCCcEEEEecC--CCcEEEEeCCCCeEEEEec-CC--CEeEEEEeC-------CCceeEEEEEcCCCcEEEE
Q 012410 188 PGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS-DK--HVQEIKIRS-------SSHVPLKILSIEDGTVLKV 255 (464)
Q Consensus 188 ~~~VaFs~pdGk~LaSgs~--D~tiKlWdl~tg~~l~tl~-~~--~V~~Vafs~-------s~d~tIklWdi~tG~~l~t 255 (464)
|..++|+ |||.+.++.+. +++|.+.|+++|+.+.++. .. ....+++.. -.+..|-++|.+|++++.+
T Consensus 23 ~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 23 TQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred cccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence 4479997 78877776654 6899999999999998875 22 334566654 2667899999999999999
Q ss_pred EeeCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-----CCceEEEEEcCCCcEEEEEe-CCeEEEE
Q 012410 256 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFR-NRTVAVW 329 (464)
Q Consensus 256 l~~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-----~~~v~sv~FspdgqllaS~s-D~TIklW 329 (464)
+......-+.++ + +++++.++..+++|.++|..+.+.+..+.-. ...++.+.|. ||+++++.. +++|.+=
T Consensus 102 i~~g~~~g~glt--~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 102 FTHQMKDGWGLA--T-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EECCSSSCCEEE--E-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECCCCCeEEEE--E-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 973211114444 4 5678888777899999999999887755421 1247788888 899998887 8899999
Q ss_pred eC-CCceEEEeccCC--------CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 330 NF-RGELVTSFEDHL--------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 330 d~-~Ge~l~tl~gH~--------~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
|. +|+.+.++.-.. ..-.....+.|+|+||++.|...++ ...+|..-++.+
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk----------~~~~v~~i~l~~ 237 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK----------LWPKLFEIKLHL 237 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET----------TCSEEEEEEEEE
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC----------CCCeEEEEEEec
Confidence 99 799999886210 0000112589999999988777765 267777666543
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.87 E-value=3.4e-06 Score=79.55 Aligned_cols=195 Identities=11% Similarity=0.004 Sum_probs=128.0
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeCC---------CceeEEEEEcCCCcEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRSS---------SHVPLKILSIEDGTVLK 254 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~s---------~d~tIklWdi~tG~~l~ 254 (464)
.+|..++|++.++.+..+....+.|.++|+.++.....+.. .....|++.|. ....|.+++.. |+..+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEE
Confidence 56779999833566666777788999999976654444432 56889999873 23567888875 43333
Q ss_pred EEe-eCCcceeeEEEEccCCCeEEEEeC---CCeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCC-cEEEEEe-CCeEE
Q 012410 255 VFY-HLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNAELMEVS-RTEFMTPSAFIFLYEN-QLFLTFR-NRTVA 327 (464)
Q Consensus 255 tl~-~~~~~~~~V~F~~~~~~~lla~s~---D~tIkIWDv~tg~~l~~l-~gh~~~v~sv~Fspdg-qllaS~s-D~TIk 327 (464)
++. .....-..+++.|. ++.|.++.. .+.|..+++. |+..+++ ......+..++++|++ .++++-. .++|.
T Consensus 115 ~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp EEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 332 22234478999883 577776653 4788888865 4433333 2344679999999975 5666666 88999
Q ss_pred EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 328 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 328 lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
..|.+|.-+..+.... .. -..+++ |+..|.-+.. ..+.|...|..+|+.++++...
T Consensus 193 ~~~~~g~~~~~~~~~~-~~----P~gi~~--d~~~lyva~~----------~~~~v~~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 193 CLNPAQPGRRKVLEGL-QY----PFAVTS--YGKNLYYTDW----------KTNSVIAMDLAISKEMDTFHPH 248 (267)
T ss_dssp EEETTEEEEEEEEECC-CS----EEEEEE--ETTEEEEEET----------TTTEEEEEETTTTEEEEEECCS
T ss_pred EEecCCCceEEEecCC-CC----ceEEEE--eCCEEEEEEC----------CCCeEEEEeCCCCCceEEEccc
Confidence 9999765444332221 22 245665 4455544432 2689999999999999999643
No 240
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.85 E-value=8.6e-07 Score=96.11 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=165.7
Q ss_pred ccceeehhcc-CCeEEeeec-ccccEeeEeecCCC----------ceEEEEEEeeCCCE----EEEEEeecCCCCcccce
Q 012410 97 ARDIVFALAH-SGVCAAFSR-ETNRRICFLNVSPD----------EVIRSLFYNKNNDS----LITVSVYASDNFSSLKC 160 (464)
Q Consensus 97 ag~~l~~l~~-~g~~~~~~~-~~g~~l~~ln~~~~----------~~i~Sv~fs~~g~~----l~svSa~~sddfs~L~~ 160 (464)
.++.|.+.+. ++.+.++|. .+|+.+-....... ...+.++++|.+.. +++. +.+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~----t~d------ 130 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT----QLD------ 130 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE----CTT------
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEE----cCC------
Confidence 3677777777 889999998 89999987754322 12356677654444 5552 223
Q ss_pred eeEEEEEeccCCCCCcccceeecccc----C--ceEEEEeCCCCcEEEEec-----CCCcEEEEeCCCCeEEEEecC-CC
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLK----W--PGFVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD-KH 228 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~----~--~~~VaFs~pdGk~LaSgs-----~D~tiKlWdl~tg~~l~tl~~-~~ 228 (464)
..+.-.|.++|+. +|+...-. + ..+-.. .+|++++.++ .|+.|.-+|.+||+++-.+.. ..
T Consensus 131 g~l~AlDa~TG~~-----~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 131 GNVAALNAETGET-----VWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp SEEEEEETTTCCE-----EEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred CEEEEEECCCCCE-----EEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 3455567778886 33321100 0 011122 2677666443 489999999999999865541 11
Q ss_pred --------------------------------------Ee-EEE--------EeCCC----------------ceeEEEE
Q 012410 229 --------------------------------------VQ-EIK--------IRSSS----------------HVPLKIL 245 (464)
Q Consensus 229 --------------------------------------V~-~Va--------fs~s~----------------d~tIklW 245 (464)
+| ..+ |-+.. ...|.-+
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al 283 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR 283 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence 11 111 21111 2479999
Q ss_pred EcCCCcEEEEEeeCCccee------e-EEEE-c-cCCC--eEEE-EeCCCeEEEEECCCCcEEEEcccC-----------
Q 012410 246 SIEDGTVLKVFYHLLHRNK------K-VDFI-E-QFNE--KLLV-KQENENLQILDVRNAELMEVSRTE----------- 302 (464)
Q Consensus 246 di~tG~~l~tl~~~~~~~~------~-V~F~-~-~~~~--~lla-~s~D~tIkIWDv~tg~~l~~l~gh----------- 302 (464)
|.+||+.+-.++...|..+ + +-+. + .++. .+++ ++.++.+.+.|..||+.+-...-.
T Consensus 284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred eCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 9999999998884323221 1 1111 1 1232 4444 679999999999999988543210
Q ss_pred -CCce---------------------------EEEEEcCCCcEEEEE---------------------------------
Q 012410 303 -FMTP---------------------------SAFIFLYENQLFLTF--------------------------------- 321 (464)
Q Consensus 303 -~~~v---------------------------~sv~FspdgqllaS~--------------------------------- 321 (464)
...+ .+.+|+|+.+++...
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 0000 245678887776542
Q ss_pred -------eCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 322 -------RNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 322 -------sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.++.|..||. +|+.+-+.+-... +++-.++..|.+++.++. |+.++.+|..||+.
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagg~vf~gt~-----------dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTL-----------DGYLKARDSDTGDL 506 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCCCC------ccCcceEecCCEEEEECC-----------CCeEEEEECCCCCE
Confidence 1368999999 7998776642211 122223445677777775 99999999999999
Q ss_pred EEEEccCC
Q 012410 394 LAKINATN 401 (464)
Q Consensus 394 l~tl~gh~ 401 (464)
|.+++-..
T Consensus 507 lW~~~l~~ 514 (599)
T 1w6s_A 507 LWKFKIPS 514 (599)
T ss_dssp EEEEECSS
T ss_pred EEEeeCCC
Confidence 99986543
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.80 E-value=9.9e-07 Score=86.69 Aligned_cols=194 Identities=11% Similarity=0.078 Sum_probs=125.7
Q ss_pred EeEEEEeCC----------CceeEEEEEcCCCcEEEEEee-CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEE
Q 012410 229 VQEIKIRSS----------SHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELM 296 (464)
Q Consensus 229 V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~~-~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l 296 (464)
.+.++|+|+ .+..|...|++||+.+.++.- .....-.+++. ++++.+.. .++++-++|..+++.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEecCCEEEEEECCCCcEE
Confidence 456666651 357899999999999998862 11122344443 46777765 8899999999999999
Q ss_pred EEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 297 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 297 ~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
.++...... ...++|||+.|..+. +++|.+.|. +.+.+.++.--....+--..|.+.|. ||.+.+....
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~------ 170 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ------ 170 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC------
Confidence 887532112 234677887666666 889999999 68888877622110010016788888 8876665433
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs 454 (464)
+++|-+-|..||+.++++.-....+ .. .............|||+|||+.|+.++
T Consensus 171 -----~~~V~vID~~tg~V~~~I~~~g~~~---~~------------------~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 171 -----TDCIARISAKDGTLLGWILLPNLRK---KL------------------IDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp -----SSEEEEEETTTCCEEEEEECHHHHH---HH------------------HHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred -----CCeEEEEECCCCcEEEEEECCCccc---cc------------------ccccccccCceEEEEEcCCCCEEEEEC
Confidence 7899999999999999995321000 00 000000012567899999998766554
Q ss_pred -CCCcEE
Q 012410 455 -RHGLVH 460 (464)
Q Consensus 455 -~DgtVr 460 (464)
...+|.
T Consensus 225 k~~~~v~ 231 (266)
T 2iwa_A 225 KLWPKLF 231 (266)
T ss_dssp TTCSEEE
T ss_pred CCCCeEE
Confidence 555544
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.80 E-value=7.4e-07 Score=97.15 Aligned_cols=235 Identities=13% Similarity=0.124 Sum_probs=148.3
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCC------CE-------eE-EEEeCC-----CceeEEEEEcCCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------HV-------QE-IKIRSS-----SHVPLKILSIEDG 250 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~------~V-------~~-Vafs~s-----~d~tIklWdi~tG 250 (464)
.+++. +| .|..++.|+.+..+|.+||+.+-+.... .+ .. |-+..+ .++.|..+|.+||
T Consensus 112 ~~~~~--~~-~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 112 GVALW--GD-KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp CCEEE--BT-EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred ceEEE--CC-EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCC
Confidence 35553 45 4555788999999999999998654310 11 01 111111 2578999999999
Q ss_pred cEEEEEeeC-Cc-----------------------------ce-eeEEEEccCCCeEEEEeCCC----------------
Q 012410 251 TVLKVFYHL-LH-----------------------------RN-KKVDFIEQFNEKLLVKQENE---------------- 283 (464)
Q Consensus 251 ~~l~tl~~~-~~-----------------------------~~-~~V~F~~~~~~~lla~s~D~---------------- 283 (464)
+++.++... .. .+ ..+++.|. .+.+.++..++
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l 267 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNL 267 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCce
Confidence 999988621 00 01 24677763 46777776665
Q ss_pred ---eEEEEECCCCcEEEEccc--CC-------CceEEEEEcCCCc---EEEEEe-CCeEEEEeC-CCceEEEeccCC-CC
Q 012410 284 ---NLQILDVRNAELMEVSRT--EF-------MTPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFEDHL-LW 345 (464)
Q Consensus 284 ---tIkIWDv~tg~~l~~l~g--h~-------~~v~sv~Fspdgq---llaS~s-D~TIklWd~-~Ge~l~tl~gH~-~~ 345 (464)
.|.-+|+.||+.+-..+. |. ..+....+..||+ .++.++ |+.+.++|. +|+++...+-.. .|
T Consensus 268 ~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 347 (668)
T 1kv9_A 268 YLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTW 347 (668)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCS
T ss_pred eeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccc
Confidence 499999999998865543 32 1222233445886 678888 999999998 799985433211 11
Q ss_pred cCC-----------------------C-------CeeEEEECCCCCEEEEEecCCC-----c-------cc---------
Q 012410 346 HPD-----------------------C-------NTNNIYITSDQDLIISYCKAEP-----E-------DQ--------- 374 (464)
Q Consensus 346 ~~~-----------------------~-------~v~svafSpDg~~LaSgs~~~~-----~-------~~--------- 374 (464)
... | +-..++|+|+..++......-+ . ..
T Consensus 348 ~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 348 AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp EEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred ccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccc
Confidence 000 0 0013788998887764321000 0 00
Q ss_pred ---c-ccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 012410 375 ---W-MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 450 (464)
Q Consensus 375 ---~-~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~L 450 (464)
. ..+.+|+|.-||+.||+.+.++..+. .++...+...|..|
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-----------------------------------~~~~~~~~t~gg~v 472 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-----------------------------------HWNGGTLSTAGNLV 472 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTEEEEEEEESS-----------------------------------SCCCCEEEETTTEE
T ss_pred cCCCCCCCccceEEEEeCCCCcEEEEccCCC-----------------------------------CCcCceeEeCCCEE
Confidence 0 12246999999999999998876543 22233445578889
Q ss_pred EEeeCCCcEEecc
Q 012410 451 YTGNRHGLVHVWS 463 (464)
Q Consensus 451 aSgs~DgtVrlWd 463 (464)
+.|+.|+.|++||
T Consensus 473 f~g~~dg~l~a~d 485 (668)
T 1kv9_A 473 FQGTAAGQMHAYS 485 (668)
T ss_dssp EEECTTSEEEEEE
T ss_pred EEECCcccchhhh
Confidence 9999999999987
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.79 E-value=2e-05 Score=86.43 Aligned_cols=316 Identities=11% Similarity=0.101 Sum_probs=190.3
Q ss_pred cceEEEEec-cceeehhccCCeEEeeecccccEeeEeecCC--CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEE
Q 012410 89 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSP--DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (464)
Q Consensus 89 s~v~~~~~a-g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~--~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l 165 (464)
..|..++.. ...|-++...|+ ..||..+++......... ...|++++..++|.+.+. .. + .+.+
T Consensus 88 n~I~~i~~d~~g~lWigT~~Gl-~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~----t~-~-------gl~~ 154 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWIGTRDGL-SRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLIS----TP-E-------GLIM 154 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSCE-EEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEE----ET-T-------EEEE
T ss_pred cceeEEEECCCCCEEEEeCCch-heeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEE----EC-C-------ceEE
Confidence 457777766 223444556665 667766666443321101 112899999999987766 11 2 3555
Q ss_pred EEeccCCCCCcccceeeccccC-ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe---cCCCEeEEEEeCC----
Q 012410 166 EYIRRGKPDSGFALFESESLKW-PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---SDKHVQEIKIRSS---- 237 (464)
Q Consensus 166 ~~i~~G~~~~~~~l~~~~~~~~-~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl---~~~~V~~Vafs~s---- 237 (464)
++..++++..-..... ... +.++.++ ++|++.+ |..++-+..||.+++++.... ....|.+|...+.
T Consensus 155 ~~~~~~~~~~~~~~~~---~~~~i~~i~~d-~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw 229 (795)
T 4a2l_A 155 FDIKESKFIDDSFSTA---MHKTIASTLYR-QGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIW 229 (795)
T ss_dssp EETTTTEEECSSSCHH---HHTCCEEEEEE-ETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEE
T ss_pred EECCCCEEEeccCCCC---CCcceEEEEEC-CCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEE
Confidence 6655554321100000 012 4478886 7898877 455545888998888765322 2456888777442
Q ss_pred ---CceeEEEEEcCCCcEEEEEee-------CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc------
Q 012410 238 ---SHVPLKILSIEDGTVLKVFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT------ 301 (464)
Q Consensus 238 ---~d~tIklWdi~tG~~l~tl~~-------~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g------ 301 (464)
.+.-|.++|.+++++...... ....+.++...+ ++.|.+|..+ -|.+||..+++.......
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 306 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS--QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGS 306 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT--TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTS
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC--CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCC
Confidence 233588899888765443211 023456666433 5788888876 688999988887665322
Q ss_pred -CCCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 012410 302 -EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 378 (464)
Q Consensus 302 -h~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s 378 (464)
....|.++...++|.+-+...++-|-.+|......+.+... ......-.|++++..++|.+.+. ..
T Consensus 307 l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG-t~---------- 375 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG-TN---------- 375 (795)
T ss_dssp CSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEE-ES----------
T ss_pred CCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEE-EC----------
Confidence 13579999999999988766677788999743333333211 01111223899999999998874 33
Q ss_pred CCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCc
Q 012410 379 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 458 (464)
Q Consensus 379 ~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dgt 458 (464)
++-|..||..+++.......... +.. .. ....|++++.+++|+.|.-|..++-
T Consensus 376 -~~Gl~~~~~~~~~~~~~~~~~~~-~~~-~l------------------------~~~~v~~i~~d~~g~~lWigt~~~G 428 (795)
T 4a2l_A 376 -DGGLNLYNPITQRFTSYTLQEDE-SAR-GI------------------------GSNNIKAVYVDEKKSLVYIGTHAGG 428 (795)
T ss_dssp -SSCEEEECTTTCCEEEECCC--------CC------------------------SCSCEEEEEEETTTTEEEEEETTTE
T ss_pred -CCCeEEEcCCCCcEEEEecCCCC-ccc-CC------------------------CCccEEEEEEcCCCCEEEEEeCcCc
Confidence 66799999988876543322100 000 00 0027999999999995666666555
Q ss_pred EEecc
Q 012410 459 VHVWS 463 (464)
Q Consensus 459 VrlWd 463 (464)
|.++|
T Consensus 429 l~~~d 433 (795)
T 4a2l_A 429 LSILH 433 (795)
T ss_dssp EEEEE
T ss_pred eeEEe
Confidence 55554
No 244
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.78 E-value=2.4e-06 Score=92.02 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCcEEEEEeeCCcc------eeeEEEEc---cCCC---eEEEEeCCCeEEEEECCCCcEEEEcccCC----
Q 012410 240 VPLKILSIEDGTVLKVFYHLLHR------NKKVDFIE---QFNE---KLLVKQENENLQILDVRNAELMEVSRTEF---- 303 (464)
Q Consensus 240 ~tIklWdi~tG~~l~tl~~~~~~------~~~V~F~~---~~~~---~lla~s~D~tIkIWDv~tg~~l~~l~gh~---- 303 (464)
..|.-+|.+||+.+-.++...|. ..+..+.. .++. .+++++.|+.+.++|..||+.+-......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 57999999999999988732121 11222222 2232 34457899999999999999885432211
Q ss_pred --------Cce---------------------------------EEEEEcCCCcEEEEE---------------------
Q 012410 304 --------MTP---------------------------------SAFIFLYENQLFLTF--------------------- 321 (464)
Q Consensus 304 --------~~v---------------------------------~sv~FspdgqllaS~--------------------- 321 (464)
..+ ..++|+|+..++...
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 000 134677765554432
Q ss_pred ------------e-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 012410 322 ------------R-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 387 (464)
Q Consensus 322 ------------s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWd 387 (464)
. +++|..||. +|+.+-+.+.+... ++-.+...|.+++.|+. |+.++.+|
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~g~~-----------dg~l~A~D 513 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL------WAGVLATAGNLVFTGTG-----------DGYFKAFD 513 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC------CSCCEEETTTEEEEECT-----------TSEEEEEE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC------cccceEeCCCEEEEECC-----------CCcEEEEE
Confidence 2 578999999 79988776644322 22223335677777876 99999999
Q ss_pred CCCCeEEEEEccCC
Q 012410 388 ILTGKCLAKINATN 401 (464)
Q Consensus 388 i~tG~cl~tl~gh~ 401 (464)
..||+.+.+++...
T Consensus 514 ~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 514 AKSGKELWKFQTGS 527 (582)
T ss_dssp TTTCCEEEEEECSS
T ss_pred CCCCCEEEEecCCC
Confidence 99999999987654
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.77 E-value=5.1e-05 Score=83.19 Aligned_cols=307 Identities=9% Similarity=0.044 Sum_probs=182.8
Q ss_pred eEEEEec--cceeehhcc-CCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEE
Q 012410 91 VIEIVAA--RDIVFALAH-SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (464)
Q Consensus 91 v~~~~~a--g~~l~~l~~-~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~ 167 (464)
+..++.. |++.+ ... .| +..|+..+++........+...|++++..++|...+.. .. .-+.+++
T Consensus 175 i~~i~~d~~g~lwi-gt~~~G-l~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt----~~-------~Gl~~~~ 241 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDG-LYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT----EG-------AGLFLIN 241 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSC-EEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE----BS-------SCEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCC-EEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE----CC-------CCeEEEe
Confidence 6666654 55554 444 45 44566566665444322245669999999999877651 11 2344555
Q ss_pred eccCCCCCcccce--eec-cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEe---------cCCCEeEEEEe
Q 012410 168 IRRGKPDSGFALF--ESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---------SDKHVQEIKIR 235 (464)
Q Consensus 168 i~~G~~~~~~~l~--~~~-~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl---------~~~~V~~Vafs 235 (464)
..++++....... ... ....+.++..+ ++|.+.+ |..+ -+.+||.+++++.... ....|.+|...
T Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D 318 (795)
T 4a2l_A 242 PKTKEIKNYLHSPSNPKSISSNYIRSLAMD-SQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD 318 (795)
T ss_dssp TTTTEEEEECCCTTCTTSCSCSBEEEEEEC-TTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC
T ss_pred CCCCeEEEeecCCCCccccCCCeEEEEEEc-CCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe
Confidence 4444331100000 000 01234478886 7998776 4445 5888999888765432 23568888886
Q ss_pred CC-------CceeEEEEEcCCCcEEEEEee-------CCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc
Q 012410 236 SS-------SHVPLKILSIEDGTVLKVFYH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 301 (464)
Q Consensus 236 ~s-------~d~tIklWdi~tG~~l~tl~~-------~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g 301 (464)
+. .++-|..++..+++.. .+.+ ....|.++.. +.++.|.+|..++-|..||..+++.......
T Consensus 319 ~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~--d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~ 395 (795)
T 4a2l_A 319 SQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVE--DKDKNLWIGTNDGGLNLYNPITQRFTSYTLQ 395 (795)
T ss_dssp TTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEE--CTTSCEEEEESSSCEEEECTTTCCEEEECCC
T ss_pred CCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEE--CCCCCEEEEECCCCeEEEcCCCCcEEEEecC
Confidence 53 3356777777655432 2221 1123566654 3358899999988899999998887665422
Q ss_pred --------CCCceEEEEEcCCCc-EEEEEeCCeEEEEeCC-CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 012410 302 --------EFMTPSAFIFLYENQ-LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 371 (464)
Q Consensus 302 --------h~~~v~sv~Fspdgq-llaS~sD~TIklWd~~-Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~ 371 (464)
....|.+++..++|+ +.+...++-|-++|.. |+.. .+.......+.-.|++++..++|.+.+...
T Consensus 396 ~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~---- 470 (795)
T 4a2l_A 396 EDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTL---- 470 (795)
T ss_dssp ------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEES----
T ss_pred CCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEec----
Confidence 135789998889999 6655446779999984 6654 343211001112389999999999888652
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 012410 372 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 451 (464)
Q Consensus 372 ~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~La 451 (464)
+-|.++|..++++...... .. +.. -....|.+++.+++|+..+
T Consensus 471 ---------~Gl~~~~~~~~~~~~~~~~-~~-~~~--------------------------~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 471 ---------SALVRFNPEQRSFTTIEKE-KD-GTP--------------------------VVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp ---------SCEEEEETTTTEEEECCBC-TT-CCB--------------------------CCCCCEEEEEECTTCCEEE
T ss_pred ---------CceeEEeCCCCeEEEcccc-cc-ccc--------------------------cCCceEEEEEECCCCCEEE
Confidence 3488899988876442211 00 000 0002789999999999777
Q ss_pred EeeCCCcE
Q 012410 452 TGNRHGLV 459 (464)
Q Consensus 452 Sgs~DgtV 459 (464)
... +|..
T Consensus 514 gt~-~Gl~ 520 (795)
T 4a2l_A 514 GGE-EGLS 520 (795)
T ss_dssp EES-SCEE
T ss_pred EeC-CceE
Confidence 655 5543
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=1.1e-05 Score=78.18 Aligned_cols=215 Identities=10% Similarity=0.082 Sum_probs=136.4
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCc----------eeEEEEEcCCCcEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSH----------VPLKILSIEDGTVLK 254 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d----------~tIklWdi~tG~~l~ 254 (464)
.+|..++++ ++|+++++...++.|..||..+ +....+. ......|++.++.. ..|-.+|.++|+...
T Consensus 32 ~~pegia~~-~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASA-PDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 467789997 7999888887889999999865 4443333 45688899977421 135555677887654
Q ss_pred EEee-CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcE-EE---------EcccCCCceEEEEEcCCCc-EEEEE
Q 012410 255 VFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL-ME---------VSRTEFMTPSAFIFLYENQ-LFLTF 321 (464)
Q Consensus 255 tl~~-~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~-l~---------~l~gh~~~v~sv~Fspdgq-llaS~ 321 (464)
.... .......+++.+ ++.+++.. .++.|..+|..+++. +. ...+....+..+ +|||+ ++++-
T Consensus 110 ~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 3321 112234444422 35666654 688999999876532 21 111233456666 88886 55666
Q ss_pred e-CCeEEEEeCC--Cce--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 322 R-NRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 322 s-D~TIklWd~~--Ge~--l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+ .++|..+|++ |++ ...+..- . . -..+++.|||++.++... .+.|.++|. .|+....
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~-~-~----P~gi~vd~dG~l~va~~~-----------~~~V~~~~~-~G~~~~~ 247 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQ-T-N----IDDFAFDVEGNLYGATHI-----------YNSVVRIAP-DRSTTII 247 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEES-C-C----CSSEEEBTTCCEEEECBT-----------TCCEEEECT-TCCEEEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEecc-C-C----CCCeEECCCCCEEEEeCC-----------CCeEEEECC-CCCEEEE
Confidence 6 8999999984 443 2222211 1 1 246999999998877543 678999996 5776332
Q ss_pred EccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEc---CCCCEEEEeeCC
Q 012410 397 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD---EERNEIYTGNRH 456 (464)
Q Consensus 397 l~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs---pDg~~LaSgs~D 456 (464)
..-.. .+...++++|. ||+++|+-.+..
T Consensus 248 ~~~~~--------------------------------~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 248 AQAEQ--------------------------------GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECGGG--------------------------------TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eeccc--------------------------------ccCCceEEEEecccCCCCEEEEECCC
Confidence 11111 01278999999 999988876653
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.73 E-value=1.1e-05 Score=76.08 Aligned_cols=182 Identities=10% Similarity=0.098 Sum_probs=115.1
Q ss_pred cEEEEecCCCcEEEEeCCCCeE-------EEEecCCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 199 KVLTYSAQDSIYKVFDLKNYTM-------LYSISDKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 199 k~LaSgs~D~tiKlWdl~tg~~-------l~tl~~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
++|..+.. +.|+.+|+..... +..........+++.|. ....|..++..++.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 3677778765432 12222345678888763 3457888888755443333322245
Q ss_pred eeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe---CCeEEEEeCCCceEE
Q 012410 263 NKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR---NRTVAVWNFRGELVT 337 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s---D~TIklWd~~Ge~l~ 337 (464)
...++|.+. ++.+.++. .++.|.++|+...............+..+++.|+ |.++++-. .+.|...+.+|+..+
T Consensus 81 p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 81 PEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp EEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred ccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 588999874 56777664 7789999997654433333333467999999995 66666654 368888898887666
Q ss_pred Eec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 338 SFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 338 tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.+. ....+ -+.++|+||++.|.-+.. ..++|...|+.+++....+
T Consensus 160 ~~~~~~~~~-----P~gia~d~~~~~lyv~d~----------~~~~I~~~~~~g~~~~~~~ 205 (267)
T 1npe_A 160 ILAQDNLGL-----PNGLTFDAFSSQLCWVDA----------GTHRAECLNPAQPGRRKVL 205 (267)
T ss_dssp EEECTTCSC-----EEEEEEETTTTEEEEEET----------TTTEEEEEETTEEEEEEEE
T ss_pred EEEECCCCC-----CcEEEEcCCCCEEEEEEC----------CCCEEEEEecCCCceEEEe
Confidence 653 22222 578999999877655443 2689999998655444433
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.69 E-value=4.1e-07 Score=98.64 Aligned_cols=186 Identities=10% Similarity=0.012 Sum_probs=130.8
Q ss_pred CCCcEEEEec-CCCcEEEEeCCCCeEEE--Eec-CCCEeEEEE-e-C--------------------------CCceeEE
Q 012410 196 VNGKVLTYSA-QDSIYKVFDLKNYTMLY--SIS-DKHVQEIKI-R-S--------------------------SSHVPLK 243 (464)
Q Consensus 196 pdGk~LaSgs-~D~tiKlWdl~tg~~l~--tl~-~~~V~~Vaf-s-~--------------------------s~d~tIk 243 (464)
|||++|--.. .+..|-+-|+++.++.. +++ ......++| + | ..+.++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4777765544 45679999999999988 554 466778887 3 2 1346899
Q ss_pred EEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCC--------------------------------------eE
Q 012410 244 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE--------------------------------------NL 285 (464)
Q Consensus 244 lWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~--------------------------------------tI 285 (464)
+.|.++.+++.++.-. ..-.-++++|+ +..+.+++++. .|
T Consensus 179 vID~~t~~v~~qI~Vg-g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEETTTTEEEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEECCCCeEEEEEEeC-CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999988721 12356777774 55666666442 58
Q ss_pred EEEECCC--CcE-EEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC-Cc------------eEEEeccCCCCcC
Q 012410 286 QILDVRN--AEL-MEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GE------------LVTSFEDHLLWHP 347 (464)
Q Consensus 286 kIWDv~t--g~~-l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~-Ge------------~l~tl~gH~~~~~ 347 (464)
.+.|.++ ++. +.+... ...+..+.|+|||+++..++ +.+|.+.|+. .+ .+.+.+--..
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g--- 332 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG--- 332 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC---
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC---
Confidence 8899988 544 443322 13567899999999877776 9999999984 42 3444442222
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC----------CeEEEEEccCC
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT----------GKCLAKINATN 401 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t----------G~cl~tl~gh~ 401 (464)
-+-++|+||| .+..... -|.+|-.||+.+ .+-+.++.-|-
T Consensus 333 ---P~h~aF~~dG-~aY~t~~----------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 333 ---PLHTAFDGRG-NAYTSLF----------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp ---EEEEEECTTS-EEEEEET----------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred ---cceEEECCCC-eEEEEEe----------cCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 3679999999 6655544 389999999988 67888887764
No 249
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.66 E-value=6.1e-06 Score=87.00 Aligned_cols=192 Identities=11% Similarity=0.050 Sum_probs=121.6
Q ss_pred CCCcEEE-EecCCCcEEEEeCCCC----eEEEEec--------CC-CEeEEEEeC-------C------CceeEEEEEcC
Q 012410 196 VNGKVLT-YSAQDSIYKVFDLKNY----TMLYSIS--------DK-HVQEIKIRS-------S------SHVPLKILSIE 248 (464)
Q Consensus 196 pdGk~La-Sgs~D~tiKlWdl~tg----~~l~tl~--------~~-~V~~Vafs~-------s------~d~tIklWdi~ 248 (464)
+++++|. +|-.+++|.|.|+++- +..+++. +. .-..+..+| . ..+.|-+.|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 5676654 5667889999999865 6667772 10 112223322 1 23689999999
Q ss_pred CCcEEEEEeeCCcc---eeeEEEEccCCCeEEEEe-------------------CCCeEEEEECCCCcEEEEccc--CCC
Q 012410 249 DGTVLKVFYHLLHR---NKKVDFIEQFNEKLLVKQ-------------------ENENLQILDVRNAELMEVSRT--EFM 304 (464)
Q Consensus 249 tG~~l~tl~~~~~~---~~~V~F~~~~~~~lla~s-------------------~D~tIkIWDv~tg~~l~~l~g--h~~ 304 (464)
|++++.++.-..+. -..+.|+|+ ...++++. .+.+|.+||+.+++.++++.- ...
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~-~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLP-NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETT-TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCeEEEEEccCCCCccccceEEECCC-CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999999721111 245777885 33444442 389999999999998887654 223
Q ss_pred ceEEEEE--cCCCcEEEEE-------eCCeEEEEeC-CCce--EEE--eccC--CCCcC---------CCCeeEEEECCC
Q 012410 305 TPSAFIF--LYENQLFLTF-------RNRTVAVWNF-RGEL--VTS--FEDH--LLWHP---------DCNTNNIYITSD 359 (464)
Q Consensus 305 ~v~sv~F--spdgqllaS~-------sD~TIklWd~-~Ge~--l~t--l~gH--~~~~~---------~~~v~svafSpD 359 (464)
.+..+.| +|||+.+-.+ -+++|-+|.. .|+. ++. +... ...++ ......|.+|||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 5666655 9999865443 2458887776 3542 111 1110 00000 011467999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCC---CCeEEEEEc
Q 012410 360 QDLIISYCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKIN 398 (464)
Q Consensus 360 g~~LaSgs~~~~~~~~~~s~DgtIklWdi~---tG~cl~tl~ 398 (464)
|++|..++. ..++|.++|+. +.+.+.++.
T Consensus 332 GrfLYVSnr----------g~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 332 DKFLYLSLW----------GIGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp SCEEEEEET----------TTTEEEEEECSSTTSCEEEEEEE
T ss_pred CCEEEEEeC----------CCCEEEEEEecCCCCcEEEEEEE
Confidence 999998876 36899999985 345666653
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=4.8e-06 Score=81.85 Aligned_cols=172 Identities=12% Similarity=0.090 Sum_probs=126.7
Q ss_pred EEEEeCCCCcEEEEecCCC--cEEEEeCCCCeEEEEec-CCCE--eEEEEeCC-------CceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQDS--IYKVFDLKNYTMLYSIS-DKHV--QEIKIRSS-------SHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~--tiKlWdl~tg~~l~tl~-~~~V--~~Vafs~s-------~d~tIklWdi~tG~~l~tl~ 257 (464)
.++|+ ||.+..|.+.++ +|++.|++||+.+.++. .... -.|++..+ .+..+-++|.+|++.+.++.
T Consensus 47 GL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 47 GFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred eEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 68896 688888888865 99999999999998776 3333 33555432 56789999999999999998
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc----CC-CceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----EF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g----h~-~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
... .=+.+++ +++.|.++..+.+|.++|..|.+.+....- +. ..+..+.+. +|+++|... +.+|.+-|.
T Consensus 125 ~~~-eG~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp 199 (262)
T 3nol_A 125 YDG-EGWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDP 199 (262)
T ss_dssp CSS-CCCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECT
T ss_pred CCC-CceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEEC
Confidence 432 2255653 466777766678899999999998875432 21 234456665 899998887 889999999
Q ss_pred -CCceEEEeccCCCC-------cCCCCeeEEEECCCCCEEEEEec
Q 012410 332 -RGELVTSFEDHLLW-------HPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~-------~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+|+.+.++.-.... -.+...|.|||+|+++.|...++
T Consensus 200 ~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 200 ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 79999987653221 01123589999999998888775
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.62 E-value=1.2e-05 Score=78.09 Aligned_cols=235 Identities=13% Similarity=0.048 Sum_probs=143.7
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec--------------------CCCEeEEEEeC-C------
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--------------------DKHVQEIKIRS-S------ 237 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~--------------------~~~V~~Vafs~-s------ 237 (464)
..|..++++ ++|.+|..+..++.|..||..+++... ... ......|++.+ +
T Consensus 19 ~~p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECC-TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 457789996 899877778888999999988765432 211 13578899986 3
Q ss_pred -CceeEEEEEcCCCcEEEEEee-----CCcceeeEEEEccCCCeEEEEeC------------------CCeEEEEECCCC
Q 012410 238 -SHVPLKILSIEDGTVLKVFYH-----LLHRNKKVDFIEQFNEKLLVKQE------------------NENLQILDVRNA 293 (464)
Q Consensus 238 -~d~tIklWdi~tG~~l~tl~~-----~~~~~~~V~F~~~~~~~lla~s~------------------D~tIkIWDv~tg 293 (464)
....|..+|..+|+. +++.. .......|++.+. ++.+.++.. ++.|..+|..++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 123377777766542 33321 1123466777661 256666532 367888998888
Q ss_pred cEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCCCc---eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 294 ELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 294 ~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~Ge---~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+..... .....+..++|+|||+ ++++-. ++.|..+++.|+ -...+.. ... -..+++.++|.+.++...
T Consensus 176 ~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-----P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 176 ETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-----PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-----EEEEEECTTSCEEEEEEE
T ss_pred EEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-----CCCeEECCCCCEEEEecC
Confidence 754433 2335678899999998 555656 889999998642 1222221 111 257999999998887542
Q ss_pred CCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 012410 369 AEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 448 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~ 448 (464)
... .....+..+.|..+|. .|+.+..+...... .+..++++++ .+|+
T Consensus 249 ~~~-~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~------------------------------~~~~~~~~~~-~~g~ 295 (322)
T 2fp8_A 249 ELD-GNMHGRVDPKGIKFDE-FGNILEVIPLPPPF------------------------------AGEHFEQIQE-HDGL 295 (322)
T ss_dssp ETT-SSTTSCEEEEEEEECT-TSCEEEEEECCTTT------------------------------TTSCCCEEEE-ETTE
T ss_pred ccc-ccccCCCccEEEEECC-CCCEEEEEECCCCC------------------------------ccccceEEEE-eCCE
Confidence 000 0000011356888885 68888887543320 0125667777 4676
Q ss_pred EEEEeeCCCcEEecc
Q 012410 449 EIYTGNRHGLVHVWS 463 (464)
Q Consensus 449 ~LaSgs~DgtVrlWd 463 (464)
..++....+.|..++
T Consensus 296 L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 296 LYIGTLFHGSVGILV 310 (322)
T ss_dssp EEEECSSCSEEEEEE
T ss_pred EEEeecCCCceEEEe
Confidence 666666777777654
No 252
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.62 E-value=1.2e-05 Score=86.84 Aligned_cols=244 Identities=9% Similarity=0.008 Sum_probs=146.5
Q ss_pred eEEeeeccccc--EeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeecccc
Q 012410 109 VCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (464)
Q Consensus 109 ~~~~~~~~~g~--~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~ 186 (464)
.+.+||..+++ .+..+...+.....++++.++|.++++ ++.+- ..+.++|..+++....-.+.. . .
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~----GG~~~-----~~v~~yd~~t~~W~~~~~~~~-~--R 287 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT----GGNDA-----KKTSLYDSSSDSWIPGPDMQV-A--R 287 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEE----CSSST-----TCEEEEEGGGTEEEECCCCSS-C--C
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEe----CCCCC-----CceEEecCcCCceeECCCCCc-c--c
Confidence 57889988887 344454444455556888899998877 44321 368888987776532211111 1 1
Q ss_pred CceEEEEeCCCCcEEEEec-CC-----CcEEEEeCCCCeEEEE-------ec----------CCCEeEEEE------eCC
Q 012410 187 WPGFVEFDDVNGKVLTYSA-QD-----SIYKVFDLKNYTMLYS-------IS----------DKHVQEIKI------RSS 237 (464)
Q Consensus 187 ~~~~VaFs~pdGk~LaSgs-~D-----~tiKlWdl~tg~~l~t-------l~----------~~~V~~Vaf------s~s 237 (464)
+-.++++- +||++++.|+ .+ .++.+||.++.+.... +. ++.++-+.- ...
T Consensus 288 ~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~ 366 (656)
T 1k3i_A 288 GYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG 366 (656)
T ss_dssp SSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECC
T ss_pred cccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEec
Confidence 21245553 6999999998 44 5799999998875432 10 112222211 112
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCc---------ceeeEEEEccCCCeEEE-EeCCC-----------eEEEEECCCCcEE
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLH---------RNKKVDFIEQFNEKLLV-KQENE-----------NLQILDVRNAELM 296 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~---------~~~~V~F~~~~~~~lla-~s~D~-----------tIkIWDv~tg~~l 296 (464)
....+..||.++++.......... .-..|.|... +++|++ |+.++ .|.+||..+.+..
T Consensus 367 ~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 445 (656)
T 1k3i_A 367 PSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV-KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT 445 (656)
T ss_dssp SSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT-TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred CccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC-CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee
Confidence 245789999998876654432111 1145555443 456655 66432 7889999998877
Q ss_pred EEc--ccCCCce-EEEEEcCCCcEEEEEe-C-----------CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCC
Q 012410 297 EVS--RTEFMTP-SAFIFLYENQLFLTFR-N-----------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 361 (464)
Q Consensus 297 ~~l--~gh~~~v-~sv~FspdgqllaS~s-D-----------~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~ 361 (464)
+.. .-+.... .+.+..|||++++.++ + .++.+||........+..-. ++...-....+.|||+
T Consensus 446 ~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~--~~R~~hs~a~ll~dg~ 523 (656)
T 1k3i_A 446 VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS--IVRVYHSISLLLPDGR 523 (656)
T ss_dssp EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS--SCCCTTEEEEECTTSC
T ss_pred EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC--CccccccHhhcCCCcE
Confidence 664 2222222 2446789999999998 5 57899998433333333211 1212223456789999
Q ss_pred EEEEEec
Q 012410 362 LIISYCK 368 (464)
Q Consensus 362 ~LaSgs~ 368 (464)
+++.|+.
T Consensus 524 v~v~GG~ 530 (656)
T 1k3i_A 524 VFNGGGG 530 (656)
T ss_dssp EEEEECC
T ss_pred EEecCCC
Confidence 9999985
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=5e-06 Score=81.71 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=130.0
Q ss_pred CeEEEEec-C--CCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCe
Q 012410 218 YTMLYSIS-D--KHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN 284 (464)
Q Consensus 218 g~~l~tl~-~--~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~t 284 (464)
++.+.+++ + .-.+.+.|+.+ ....|+..|++||++++++.-. ...+.....+ .+++|.... .++.
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~-~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISD-WKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEE-ETTEEEEEESSSSE
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEE-eCCEEEEEEeeCCE
Confidence 34555555 2 34677777631 2358999999999999998732 3344422222 356777754 7899
Q ss_pred EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE
Q 012410 285 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL 362 (464)
Q Consensus 285 IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~ 362 (464)
+-++|..+++.+.++.-.. .-+.+ ++||+.|..+. +++|.++|. +.+.+.+++--....+--.+|.+.+. ||++
T Consensus 109 v~v~D~~t~~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEETTTCCEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECccCcEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999876432 33444 46777666666 888999998 68988876642211110115667776 8877
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 363 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 363 LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
.|..-. +.+|-+-|..||+.+++|.-..-.+.... ......-...||
T Consensus 185 yan~w~-----------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~----------------------~~~~~~vlNGIA 231 (262)
T 3nol_A 185 FANVWQ-----------TNKIVRIDPETGKVTGIIDLNGILAEAGP----------------------LPSPIDVLNGIA 231 (262)
T ss_dssp EEEETT-----------SSEEEEECTTTCBEEEEEECTTGGGGSCS----------------------CCSSCCCEEEEE
T ss_pred EEEEcc-----------CCeEEEEECCCCcEEEEEECCcCcccccc----------------------ccCcCCceEEEE
Confidence 765544 78999999999999999965421000000 000112567899
Q ss_pred EcCCCCEEEEee
Q 012410 443 YDEERNEIYTGN 454 (464)
Q Consensus 443 fspDg~~LaSgs 454 (464)
|+|+++.|+-.+
T Consensus 232 ~dp~~~~lfVTG 243 (262)
T 3nol_A 232 WDKEHHRLFVTG 243 (262)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCEEEEEC
Confidence 999999888665
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.60 E-value=2.1e-05 Score=76.45 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=128.2
Q ss_pred CeEEEEec---CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCe
Q 012410 218 YTMLYSIS---DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENEN 284 (464)
Q Consensus 218 g~~l~tl~---~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~t 284 (464)
++.+.+++ ..-.+.+.|+++ ....|+..|++||+.++++.-. ...+...... .+++|... -.++.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~-~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVA-WRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEE-ETTEEEEEESSSSE
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEE-eCCEEEEEEeeCCE
Confidence 34455554 245777777652 2358999999999999988632 2333332222 24677664 48899
Q ss_pred EEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCE
Q 012410 285 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL 362 (464)
Q Consensus 285 IkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~ 362 (464)
+.++|..+.+.+.++.... ..+.++ +|++.|..+. +++|.++|. +.+.+.+++-.....+--.+|-+.+. +|++
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999999877543 345554 6666555555 889999998 78988877643221110115556654 7876
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 363 IISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 363 LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
.|-.-. +..|-+-|..||+++.+|.-..-.|...... .....-...||
T Consensus 163 yanvw~-----------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~---------------------~~~~~vlNGIA 210 (243)
T 3mbr_X 163 LANVWL-----------TSRIARIDPASGKVVAWIDLQALVPDADALT---------------------DSTNDVLNGIA 210 (243)
T ss_dssp EEEETT-----------TTEEEEECTTTCBEEEEEECGGGSTTTTSCC---------------------CTTSSCEEEEE
T ss_pred EEEECC-----------CCeEEEEECCCCCEEEEEECCcCcccccccc---------------------CCcCCceEEEE
Confidence 665433 6789999999999999996543211100000 00112567899
Q ss_pred EcCCCCEEEEee
Q 012410 443 YDEERNEIYTGN 454 (464)
Q Consensus 443 fspDg~~LaSgs 454 (464)
|+|+++.|+-.+
T Consensus 211 ~d~~~~~lfVTG 222 (243)
T 3mbr_X 211 FDAEHDRLFVTG 222 (243)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCEEEEEC
Confidence 999988877655
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.52 E-value=9.7e-06 Score=79.93 Aligned_cols=172 Identities=11% Similarity=0.081 Sum_probs=125.0
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCE--eEEEEeCC-------CceeEEEEEcCCCcEEEEEeeCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHV--QEIKIRSS-------SHVPLKILSIEDGTVLKVFYHLL 260 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V--~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~~~ 260 (464)
.++|+ ++.+..|.+.++.|++.|++||+.+.++-.... ..|++..+ .+..+-++|.+|++.+.++...
T Consensus 59 GL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~- 135 (268)
T 3nok_A 59 GLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS- 135 (268)
T ss_dssp EEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-
T ss_pred eEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-
Confidence 68996 688889999999999999999998876532222 33555432 5678999999999999999843
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEccc--CC---CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CC
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EF---MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RG 333 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g--h~---~~v~sv~FspdgqllaS~s-D~TIklWd~-~G 333 (464)
..=+.+++ +++.|.++..+.+|.++|..|.+.+....- +. ..+..+.|. +|+++|... +.+|.+=|. +|
T Consensus 136 ~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG 211 (268)
T 3nok_A 136 GEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG 211 (268)
T ss_dssp SCCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC
T ss_pred CceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 22266664 456777776789999999999998875432 11 234555665 899998887 889999999 79
Q ss_pred ceEEEeccCCC--------CcCCCCeeEEEECCCCCEEEEEec
Q 012410 334 ELVTSFEDHLL--------WHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 334 e~l~tl~gH~~--------~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+.+.++.-... ...+...|.||+.|+++.|...++
T Consensus 212 ~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 212 TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99987763210 001123689999998776665543
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=1.2e-05 Score=79.30 Aligned_cols=153 Identities=14% Similarity=0.031 Sum_probs=109.2
Q ss_pred CEeEEEEeC-------CCceeEEEEEcCCCcEEEEEeeCCcceee--EEEEccCCCeEEEE-eCCCeEEEEECCCCcEEE
Q 012410 228 HVQEIKIRS-------SSHVPLKILSIEDGTVLKVFYHLLHRNKK--VDFIEQFNEKLLVK-QENENLQILDVRNAELME 297 (464)
Q Consensus 228 ~V~~Vafs~-------s~d~tIklWdi~tG~~l~tl~~~~~~~~~--V~F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~ 297 (464)
-.+.+.|+. ..++.|+..|++||+.++++ .....+. +++ .+++|... -.++.+.++|..+++.+.
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~---~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS---DGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE---CSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE---eCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 356666643 45566999999999999988 2234444 554 45666664 489999999999999999
Q ss_pred EcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 012410 298 VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 375 (464)
Q Consensus 298 ~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~ 375 (464)
++.-.. ..+.+ .+||+.|..+. +++|.++|. +.+.+.+++--....+--.+|.+.+. ||++.|....
T Consensus 131 ti~~~~-eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~------- 199 (268)
T 3nok_A 131 TTRYSG-EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH------- 199 (268)
T ss_dssp EEECSS-CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-------
T ss_pred EEeCCC-ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC-------
Confidence 877532 33555 46777776666 899999998 69998877643221110115667776 8877765544
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 376 MEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+.+|-+-|..||+++++|.-.
T Consensus 200 ----s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 200 ----SSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp ----CSEEEEECTTTCBEEEEEECH
T ss_pred ----CCeEEEEeCCCCcEEEEEECC
Confidence 679999999999999999643
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=3.3e-05 Score=75.08 Aligned_cols=172 Identities=12% Similarity=0.063 Sum_probs=123.4
Q ss_pred EEEEeCCCCcEEEEecCC--CcEEEEeCCCCeEEEEec-CCCE--eEEEEeC-------CCceeEEEEEcCCCcEEEEEe
Q 012410 190 FVEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSIS-DKHV--QEIKIRS-------SSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D--~tiKlWdl~tg~~l~tl~-~~~V--~~Vafs~-------s~d~tIklWdi~tG~~l~tl~ 257 (464)
.++|+ +|.+..|.+.+ +.|++.|+++|+.+.++. .... -.+++.. -.++.+-++|.+|++.+.++.
T Consensus 25 GL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 25 GLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR 102 (243)
T ss_dssp EEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence 68997 47788887775 599999999999998775 3332 3344443 246789999999999999998
Q ss_pred eCCcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCC-----CceEEEEEcCCCcEEEEEe-CCeEEEEeC
Q 012410 258 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-----MTPSAFIFLYENQLFLTFR-NRTVAVWNF 331 (464)
Q Consensus 258 ~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-----~~v~sv~FspdgqllaS~s-D~TIklWd~ 331 (464)
.... =+.++ + ++++|.++..+.+|.++|..|.+.+....-.. ..+..+.+. +|+++|... +..|.+-|.
T Consensus 103 ~~~~-Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp 177 (243)
T 3mbr_X 103 YPGE-GWALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDP 177 (243)
T ss_dssp CSSC-CCEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECT
T ss_pred CCCC-ceEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEEC
Confidence 4322 25565 3 46777777678999999999999887654211 123344433 899998887 889999999
Q ss_pred -CCceEEEeccCCCC--------cCCCCeeEEEECCCCCEEEEEec
Q 012410 332 -RGELVTSFEDHLLW--------HPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 332 -~Ge~l~tl~gH~~~--------~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+|+.+.++.-.... -.+...|.||+.|+++.|...++
T Consensus 178 ~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 178 ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 79999977622110 01123689999999888777664
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=0.00048 Score=75.29 Aligned_cols=269 Identities=13% Similarity=0.060 Sum_probs=158.7
Q ss_pred cceEEEEec--cceeehhcc-CCeEEeeecccccEeeEee-------------cCCCceEEEEEEeeCCCEEEEEEeecC
Q 012410 89 TKVIEIVAA--RDIVFALAH-SGVCAAFSRETNRRICFLN-------------VSPDEVIRSLFYNKNNDSLITVSVYAS 152 (464)
Q Consensus 89 s~v~~~~~a--g~~l~~l~~-~g~~~~~~~~~g~~l~~ln-------------~~~~~~i~Sv~fs~~g~~l~svSa~~s 152 (464)
..|..++.. |++.. +.. .|+. .++..+++...... .-+...|++++..++|...+. +
T Consensus 258 ~~i~~i~~d~~g~lWi-gt~~~Gl~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWig-----t 330 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWI-ATELNGIM-ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIG-----T 330 (781)
T ss_dssp CCEEEEEECTTSEEEE-EESSSCEE-EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEE-----E
T ss_pred ceEEEEEECCCCCEEE-EeCCCCeE-EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEE-----e
Confidence 346666653 44443 444 5554 45545544322211 113456999999999987655 1
Q ss_pred CCCcccceeeEEEEEeccCCCCCcccceee-------c--cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-
Q 012410 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFES-------E--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY- 222 (464)
Q Consensus 153 ddfs~L~~~ti~l~~i~~G~~~~~~~l~~~-------~--~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~- 222 (464)
.+ .-+..++...+... .+.. . ....+.+++.+ ++|.+.+ |+.++-+-++|.++++..+
T Consensus 331 ~~------~Gl~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 331 WG------GGINFISNAPPTFH----TWSYSPTQMNESSLSNKVVSSVCDD-GQGKLWI-GTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp BS------SCEEEECSSCCSCE----EEC----CCCSSCCSSSCEEEEEEC-TTSCEEE-EEBSSCEEEEETTEEEEECC
T ss_pred cC------CeEEEeCCCCCcce----eeccCccccccCCCCCcceEEEEEc-CCCCEEE-EeCCCcEEEEECCCCeEEEc
Confidence 11 22333333333221 1100 0 11234478885 7888765 5555557888987665432
Q ss_pred ----EecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEee---CCcceeeEEEEccCCCeEEEEeCCCeEEEE
Q 012410 223 ----SISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFYH---LLHRNKKVDFIEQFNEKLLVKQENENLQIL 288 (464)
Q Consensus 223 ----tl~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~~---~~~~~~~V~F~~~~~~~lla~s~D~tIkIW 288 (464)
.+....|+++...+. .+.-|..+|.++|+... +.. ....+.++.. +.++.|.++.. +-|.++
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~--d~~g~lwigt~-~Gl~~~ 474 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYE--DKNKKIWIGTH-AGVFVI 474 (781)
T ss_dssp -----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEE--CTTSEEEEEET-TEEEEE
T ss_pred cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEE--CCCCCEEEEEC-CceEEE
Confidence 234567888887643 24568888888776433 221 1234566654 33578888877 568899
Q ss_pred ECCCCcEEEEcccC-----CCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEE
Q 012410 289 DVRNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLI 363 (464)
Q Consensus 289 Dv~tg~~l~~l~gh-----~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~L 363 (464)
|..+++........ ...|.++...++|++.+...++-+-.+|..+..++.+..... .+.-.|.+++..++|.+.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEG-FCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTT-CSCSCEEEEEECTTSCEE
T ss_pred eCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCC-CCCCeeEEEEECCCCCEE
Confidence 99888765543222 367899999999999988773336668886555555542211 122348899999999988
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
++.. .|-|..+|..+++.
T Consensus 554 i~T~------------~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 554 LATG------------EGLVCFPSARNFDY 571 (781)
T ss_dssp EEET------------TEEEEESCTTTCCC
T ss_pred EEEC------------CCceEEECCCCCcE
Confidence 8753 56558889877764
No 259
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=6e-05 Score=77.77 Aligned_cols=246 Identities=9% Similarity=0.083 Sum_probs=141.9
Q ss_pred ccCceEEEEeCC--CCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCc------------eeEEEEEcCC
Q 012410 185 LKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSH------------VPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~p--dGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d------------~tIklWdi~t 249 (464)
+..|..|+|+ | +|.+.+ +...+.|+.+|+++++...... ......|+|+++.. ...-+|-..+
T Consensus 136 ~~~P~~lavd-p~~~g~Lyv-~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 136 FGGAVWLSFD-PKNHNHLYL-VGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CSCCCEEEEE-TTEEEEEEE-EEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCCCEEEEC-CCCCCeEEE-EeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 5678899998 6 354444 4333789999998877654444 45688899987533 1112222233
Q ss_pred CcEE--EEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCCc-EEEEEe-C
Q 012410 250 GTVL--KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQ-LFLTFR-N 323 (464)
Q Consensus 250 G~~l--~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l-~gh~~~v~sv~Fspdgq-llaS~s-D 323 (464)
|... ..+.. ......+++.|. ++.|.++. .++.|..+|..+++..... .+....+..++|+|+|+ ++++-. +
T Consensus 214 g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred Cceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 4332 23332 133477888773 46777764 7789999998887753322 22235789999999999 677766 8
Q ss_pred CeEEEEeCCC---ce--EEEeccC---CCCcCC------C-Cee-EEEEC--------CCCCEEEEEecCCCccccccCC
Q 012410 324 RTVAVWNFRG---EL--VTSFEDH---LLWHPD------C-NTN-NIYIT--------SDQDLIISYCKAEPEDQWMEGS 379 (464)
Q Consensus 324 ~TIklWd~~G---e~--l~tl~gH---~~~~~~------~-~v~-svafS--------pDg~~LaSgs~~~~~~~~~~s~ 379 (464)
+.|..++.+| ++ +.++.+. ..+... . .-. .+++. ++|.+.++=..
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~----------- 360 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE----------- 360 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG-----------
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC-----------
Confidence 9999988754 33 3444443 111000 0 012 45553 45777766433
Q ss_pred CCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCC-CCEEEEeeCCCc
Q 012410 380 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGL 458 (464)
Q Consensus 380 DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspD-g~~LaSgs~Dgt 458 (464)
.+.|+.+| .+|+ +.++-|..... ..-..+| .......|..-+.|+++|+ |..+++-...+.
T Consensus 361 n~~I~~i~-~~G~-v~~~~g~g~~~--~~G~~dG--------------~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r 422 (430)
T 3tc9_A 361 NHCIRILT-PQGR-VTTFAGRGSNG--TSGYNDG--------------DLRQEARFNHPEGIVYDEERECFFIGDRENRR 422 (430)
T ss_dssp GTEEEEEC-TTSE-EEEEEECCTTS--SSSCBCE--------------ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred CcEEEEEC-CCCc-EEEEEeCCCCC--CCcccCC--------------CchhhcEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 57888888 5775 44443431000 0000000 0001122447789999995 666666666777
Q ss_pred EEecc
Q 012410 459 VHVWS 463 (464)
Q Consensus 459 VrlWd 463 (464)
||..+
T Consensus 423 Ir~i~ 427 (430)
T 3tc9_A 423 IRKIG 427 (430)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 77643
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.45 E-value=2.6e-05 Score=83.59 Aligned_cols=235 Identities=9% Similarity=0.030 Sum_probs=143.8
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC-C-----CEe-------E-EEEeCC-----CceeEEEEEcCCC
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HVQ-------E-IKIRSS-----SHVPLKILSIEDG 250 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-~-----~V~-------~-Vafs~s-----~d~tIklWdi~tG 250 (464)
.++.. +|+ |..++.|+.+..+|.+||+.+-+... . .+. . |-+... .++.|..+|.+||
T Consensus 110 ~~~~~--~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 110 GLAYG--AGQ-IVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp CCEEE--TTE-EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred ccEEE--CCE-EEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC
Confidence 34553 554 44567899999999999998855431 1 111 1 111111 1689999999999
Q ss_pred cEEEEEeeCCcc-------------------------------------e-eeEEEEccCCCeEEEEeC-----------
Q 012410 251 TVLKVFYHLLHR-------------------------------------N-KKVDFIEQFNEKLLVKQE----------- 281 (464)
Q Consensus 251 ~~l~tl~~~~~~-------------------------------------~-~~V~F~~~~~~~lla~s~----------- 281 (464)
+.+.++...... + ..+++.+. .+.+..+..
T Consensus 187 ~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~-~g~vy~~~g~~~~~~~~~~~ 265 (571)
T 2ad6_A 187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK-LNLFYYGSGNPAPWNETMRP 265 (571)
T ss_dssp CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSCSCGGGSC
T ss_pred cEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC-CCeEEEECCCCccccCCccC
Confidence 999988632111 0 12455553 456666542
Q ss_pred -C----CeEEEEECCCCcEEEEcc--cCC-------CceEEEEEcCCCc---EEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 282 -N----ENLQILDVRNAELMEVSR--TEF-------MTPSAFIFLYENQ---LFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 282 -D----~tIkIWDv~tg~~l~~l~--gh~-------~~v~sv~Fspdgq---llaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
| +.|..+|..||+.+-..+ +|. ..+.-+...+||+ +++.++ ++.+.+.|. +|+++..++-.
T Consensus 266 gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~ 345 (571)
T 2ad6_A 266 GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD 345 (571)
T ss_dssp SCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred CCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeeccc
Confidence 2 369999999999886543 221 1222233346885 677788 999999998 79998765421
Q ss_pred --CCCcCC-------------------------C-------CeeEEEECCCCCEEEEEecCC-----------Ccccccc
Q 012410 343 --LLWHPD-------------------------C-------NTNNIYITSDQDLIISYCKAE-----------PEDQWME 377 (464)
Q Consensus 343 --~~~~~~-------------------------~-------~v~svafSpDg~~LaSgs~~~-----------~~~~~~~ 377 (464)
..|... | +=..++|+|+..+|...+..- .+.+...
T Consensus 346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 425 (571)
T 2ad6_A 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence 111000 0 002478999988887765310 0001000
Q ss_pred ---------------CCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEE
Q 012410 378 ---------------GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 442 (464)
Q Consensus 378 ---------------s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 442 (464)
..++.|..||+.||+.+.++.... .+++..
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-----------------------------------~~~~~~ 470 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-----------------------------------AAWGGT 470 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-----------------------------------CCCSBC
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-----------------------------------Ccccee
Confidence 246899999999999988875432 112222
Q ss_pred EcCCCCEEEEeeCCCcEEecc
Q 012410 443 YDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 443 fspDg~~LaSgs~DgtVrlWd 463 (464)
+...+..++.|+.||.|+.||
T Consensus 471 ~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 471 LYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EEETTTEEEEECTTSEEEEEE
T ss_pred EEECCCEEEEEcCCCeEEEEE
Confidence 333567788888999998887
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.44 E-value=0.00018 Score=77.31 Aligned_cols=148 Identities=12% Similarity=0.074 Sum_probs=94.2
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--C---------CC--EeE------EEEeCC------CceeEEE
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D---------KH--VQE------IKIRSS------SHVPLKI 244 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~---------~~--V~~------Vafs~s------~d~tIkl 244 (464)
.++.. +|+ |..++.|+.+.-.|.+||+.+-... . .. +.. +.+-.. .++.|.-
T Consensus 112 g~a~~--~~~-v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~a 188 (582)
T 1flg_A 112 GAAIY--GDK-VFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFA 188 (582)
T ss_dssp CCEEE--TTE-EEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEE
T ss_pred ccEEE--CCE-EEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEE
Confidence 34453 554 4456789999999999999885432 1 11 122 333222 3678999
Q ss_pred EEcCCCcEEEEEeeCC----------------------------------------cce-eeEEEEccCCCeEEEEeC--
Q 012410 245 LSIEDGTVLKVFYHLL----------------------------------------HRN-KKVDFIEQFNEKLLVKQE-- 281 (464)
Q Consensus 245 Wdi~tG~~l~tl~~~~----------------------------------------~~~-~~V~F~~~~~~~lla~s~-- 281 (464)
+|.+||+.+-+..... +.+ ..+++.|. .+.+.++..
T Consensus 189 lD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~-~g~vyv~~gn~ 267 (582)
T 1flg_A 189 RDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE-TNTIIVGAGNP 267 (582)
T ss_dssp ECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT-TTEEEEEECCB
T ss_pred EECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCC-CCEEEEeCCCC
Confidence 9999999998765210 000 12445553 456666542
Q ss_pred ------------------C----CeEEEEECCCCcEEEEcc--cCC-------CceEEEEEc-CCCc---EEEEEe-CCe
Q 012410 282 ------------------N----ENLQILDVRNAELMEVSR--TEF-------MTPSAFIFL-YENQ---LFLTFR-NRT 325 (464)
Q Consensus 282 ------------------D----~tIkIWDv~tg~~l~~l~--gh~-------~~v~sv~Fs-pdgq---llaS~s-D~T 325 (464)
| +.|.-+|+.||+.+-..+ .|. ..+.-+... .+|+ +++.++ |+.
T Consensus 268 ~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~ 347 (582)
T 1flg_A 268 GPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGF 347 (582)
T ss_dssp SSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSE
T ss_pred CcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCce
Confidence 3 689999999999886543 332 122222222 5784 788888 999
Q ss_pred EEEEeC-CCceEEEecc
Q 012410 326 VAVWNF-RGELVTSFED 341 (464)
Q Consensus 326 IklWd~-~Ge~l~tl~g 341 (464)
+.++|. +|+++-.+.-
T Consensus 348 l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 348 FYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEEEETTTCCEEEEEES
T ss_pred EEEEECCCCCEeccccc
Confidence 999998 7999876553
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.00065 Score=74.25 Aligned_cols=312 Identities=13% Similarity=0.045 Sum_probs=180.9
Q ss_pred ceEEEEec--cceeehhccCCeEEeeecccccEeeEeec------CCCceEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 012410 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNV------SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (464)
Q Consensus 90 ~v~~~~~a--g~~l~~l~~~g~~~~~~~~~g~~l~~ln~------~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ 161 (464)
.|..++.. |++... ...| +..|+..+++....... -....|++++..++|.+.+. +++ .
T Consensus 212 ~i~~i~~d~~g~lwig-t~~G-l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-----t~~------~ 278 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIG-TSKG-LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIA-----TEL------N 278 (781)
T ss_dssp SEEEEEECTTCCEEEE-ETTE-EEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEE-----ESS------S
T ss_pred ceeEEEEcCCCCEEEE-eCCc-HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEE-----eCC------C
Confidence 46666664 555443 3345 45566566654433211 12456999999999876654 221 1
Q ss_pred eEEEEEeccCCCCCccc----ce-e---ec--cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE--------
Q 012410 162 STKIEYIRRGKPDSGFA----LF-E---SE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-------- 223 (464)
Q Consensus 162 ti~l~~i~~G~~~~~~~----l~-~---~~--~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t-------- 223 (464)
-+.+.+..+++...... .+ . .. ....+.++..+ .+|.+.+ |+.++-|-.++..++....-
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 356 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD-SFNNIWI-GTWGGGINFISNAPPTFHTWSYSPTQMN 356 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC-SSCCEEE-EEBSSCEEEECSSCCSCEEEC----CCC
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe-CCCCEEE-EecCCeEEEeCCCCCcceeeccCccccc
Confidence 34445544444321000 00 0 00 01223478885 7887665 66566688888876654321
Q ss_pred ---ecCCCEeEEEEeCC-------CceeEEEEEcCCCcEEEEEe---eCCcceeeEEEEccCCCeEEEEeCCCeEEEEEC
Q 012410 224 ---ISDKHVQEIKIRSS-------SHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 290 (464)
Q Consensus 224 ---l~~~~V~~Vafs~s-------~d~tIklWdi~tG~~l~tl~---~~~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv 290 (464)
+....|.+|+..++ .+.-|..+|..+++...-.. .....+.++... .++.|.+|..++-|..+|.
T Consensus 357 ~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~g~lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 357 ESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKD--SEGNLWFGTYLGNISYYNT 434 (781)
T ss_dssp SSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEEC--TTSCEEEEETTEEEEEECS
T ss_pred cCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC--CCCCEEEEeccCCEEEEcC
Confidence 12456888887653 23457777776554322110 111345666543 3588999988888999999
Q ss_pred CCCcEEEEcc--cCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 291 RNAELMEVSR--TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 291 ~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
.+++...... -....|.++...++|++.+... +-|-++|. +++...-............|.+++..++|.+.++..
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 513 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF 513 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred CCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence 8888765432 1346789998899999887766 56888998 466543322220000112288999999999988653
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 012410 368 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 447 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg 447 (464)
++-|..+|..+++.. .+......| ...|.+++.+++|
T Consensus 514 ------------~~Gl~~~~~~~~~~~-~~~~~~~l~------------------------------~~~i~~i~~d~~g 550 (781)
T 3v9f_A 514 ------------GGGVGIYTPDMQLVR-KFNQYEGFC------------------------------SNTINQIYRSSKG 550 (781)
T ss_dssp ------------SSCEEEECTTCCEEE-EECTTTTCS------------------------------CSCEEEEEECTTS
T ss_pred ------------CCCEEEEeCCCCeEE-EccCCCCCC------------------------------CCeeEEEEECCCC
Confidence 234777898777643 332211100 0178999999999
Q ss_pred CEEEEeeCCCcEEecc
Q 012410 448 NEIYTGNRHGLVHVWS 463 (464)
Q Consensus 448 ~~LaSgs~DgtVrlWd 463 (464)
+..++.. +|.|..||
T Consensus 551 ~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 551 QMWLATG-EGLVCFPS 565 (781)
T ss_dssp CEEEEET-TEEEEESC
T ss_pred CEEEEEC-CCceEEEC
Confidence 9776655 77745554
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.40 E-value=0.00014 Score=70.48 Aligned_cols=186 Identities=10% Similarity=0.005 Sum_probs=116.7
Q ss_pred cCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEe---c---CCCEeEEEEeC-CC-------------------
Q 012410 186 KWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSI---S---DKHVQEIKIRS-SS------------------- 238 (464)
Q Consensus 186 ~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl---~---~~~V~~Vafs~-s~------------------- 238 (464)
..|..++|+ + +|++++.... ..+..+|..+++..... . -.....|++.| +.
T Consensus 80 ~~p~gi~~~-~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYN-LQNNQLYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEE-TTTTEEEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEc-CCCCcEEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 457789997 6 7877765444 44888898776532111 1 13467788876 41
Q ss_pred ------ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCCCc--EEEEcccCCCceEEE
Q 012410 239 ------HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAE--LMEVSRTEFMTPSAF 309 (464)
Q Consensus 239 ------d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~tg~--~l~~l~gh~~~v~sv 309 (464)
++.|..+|..+|++....... ..-..|+|+++ +..|.++ ..++.|..+|+.+.. -.+++..... +..+
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~p~gia~~~d-g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi 234 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKEL-HVPGGAEVSAD-SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI 234 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEEE-SCCCEEEECTT-SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred hcccCCCceEEEEeCCCCEEEEeccCC-ccCcceEECCC-CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence 245777777777654333321 33467899884 4556666 467899999987521 1122111112 8899
Q ss_pred EEcCCCcEEEEEeC-----------CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 012410 310 IFLYENQLFLTFRN-----------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 378 (464)
Q Consensus 310 ~FspdgqllaS~sD-----------~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s 378 (464)
++.++|++.++... +.|..+|.+|+.+..+........ ..+.++++ .+|++.++...
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~-~~~~~~~~-~~g~L~v~~~~---------- 302 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG-EHFEQIQE-HDGLLYIGTLF---------- 302 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT-SCCCEEEE-ETTEEEEECSS----------
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCcc-ccceEEEE-eCCEEEEeecC----------
Confidence 99999998888642 567788888999988876532100 01456777 57777776543
Q ss_pred CCCeEEEEeCC
Q 012410 379 SAGSINVSSIL 389 (464)
Q Consensus 379 ~DgtIklWdi~ 389 (464)
.+.|..+++.
T Consensus 303 -~~~i~~~~~~ 312 (322)
T 2fp8_A 303 -HGSVGILVYD 312 (322)
T ss_dssp -CSEEEEEEC-
T ss_pred -CCceEEEecc
Confidence 6778888763
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=0.0002 Score=69.29 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=130.6
Q ss_pred cccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCC
Q 012410 117 TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV 196 (464)
Q Consensus 117 ~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~p 196 (464)
+.+.+..+.. ..+..++++.++|..+++ ...+ +.|..++. .|+.. ..+.. -++|..++|+ +
T Consensus 21 ~~~~~~~~p~--~~~pegia~~~~g~lyv~----d~~~------~~I~~~d~-~g~~~---~~~~~--~~~p~gia~~-~ 81 (306)
T 2p4o_A 21 PAKIITSFPV--NTFLENLASAPDGTIFVT----NHEV------GEIVSITP-DGNQQ---IHATV--EGKVSGLAFT-S 81 (306)
T ss_dssp CEEEEEEECT--TCCEEEEEECTTSCEEEE----ETTT------TEEEEECT-TCCEE---EEEEC--SSEEEEEEEC-T
T ss_pred CceEeEeCCC--CCCcceEEECCCCCEEEE----eCCC------CeEEEECC-CCceE---EEEeC--CCCceeEEEc-C
Confidence 3444555522 256789999999985555 1122 45555553 34321 12222 2467799997 8
Q ss_pred CCcEEEEecCCCc--EEEEeCCCCeEEEE--ecC-CCEeEEEEeC--------CCceeEEEEEcCCCcE-EEEEe-----
Q 012410 197 NGKVLTYSAQDSI--YKVFDLKNYTMLYS--ISD-KHVQEIKIRS--------SSHVPLKILSIEDGTV-LKVFY----- 257 (464)
Q Consensus 197 dGk~LaSgs~D~t--iKlWdl~tg~~l~t--l~~-~~V~~Vafs~--------s~d~tIklWdi~tG~~-l~tl~----- 257 (464)
||+++++...... |-.+|..+|+.... +.. .....+++.+ ...+.|..+|..+|+. +....
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 9998776544333 55567788876432 222 2223333322 2345666777665532 11111
Q ss_pred ----eCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECCC-CcE--EEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEE
Q 012410 258 ----HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-AEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 328 (464)
Q Consensus 258 ----~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~t-g~~--l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIkl 328 (464)
.....-..| ++ +++.|.++ ...+.|..+|+.. |+. .+++.. ...+..+++.+||+++++-. .+.|.+
T Consensus 162 ~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 162 SNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVR 237 (306)
T ss_dssp SSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred ccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEE
Confidence 011122344 45 35667665 4788999999875 432 122211 24577899999999998887 889999
Q ss_pred EeCCCceEE--EeccCCCCcCCCCeeEEEEC---CCCCEEEEEe
Q 012410 329 WNFRGELVT--SFEDHLLWHPDCNTNNIYIT---SDQDLIISYC 367 (464)
Q Consensus 329 Wd~~Ge~l~--tl~gH~~~~~~~~v~svafS---pDg~~LaSgs 367 (464)
+|.+|++.. .+.....+ ..+++|. ||++.|.-.+
T Consensus 238 ~~~~G~~~~~~~~~~~~~~-----p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 238 IAPDRSTTIIAQAEQGVIG-----STAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp ECTTCCEEEEECGGGTCTT-----EEEEEECCSTTTTTEEEEEE
T ss_pred ECCCCCEEEEeecccccCC-----ceEEEEecccCCCCEEEEEC
Confidence 999898744 34333233 6799999 8987766554
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.34 E-value=0.00021 Score=77.37 Aligned_cols=150 Identities=13% Similarity=0.039 Sum_probs=95.0
Q ss_pred EEEEeCCCCc---EEEEecCCCcEEEEeCCCCeEEEEecC-C-----CE-------eE-EEEeCC-----CceeEEEEEc
Q 012410 190 FVEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HV-------QE-IKIRSS-----SHVPLKILSI 247 (464)
Q Consensus 190 ~VaFs~pdGk---~LaSgs~D~tiKlWdl~tg~~l~tl~~-~-----~V-------~~-Vafs~s-----~d~tIklWdi 247 (464)
.+++++.+|+ .|..++.|+.+.-.|.+||+.+-.... . .+ .. |-+..+ .++.|.-+|.
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~ 189 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDV 189 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEET
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEEC
Confidence 4666422444 145577899999999999998854321 1 11 11 111111 3689999999
Q ss_pred CCCcEEEEEeeCCcc-------------------------------------ee-eEEEEccCCCeEEEEeCC-------
Q 012410 248 EDGTVLKVFYHLLHR-------------------------------------NK-KVDFIEQFNEKLLVKQEN------- 282 (464)
Q Consensus 248 ~tG~~l~tl~~~~~~-------------------------------------~~-~V~F~~~~~~~lla~s~D------- 282 (464)
+||+.+-++...... ++ ..++.+ ..+.+.++..+
T Consensus 190 ~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 190 KTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGG
T ss_pred CCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCc
Confidence 999999888732111 11 234444 34667776544
Q ss_pred ---------CeEEEEECCCCcEEEEccc--CCC-------ceEEEEEc-CCC---cEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 283 ---------ENLQILDVRNAELMEVSRT--EFM-------TPSAFIFL-YEN---QLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 283 ---------~tIkIWDv~tg~~l~~l~g--h~~-------~v~sv~Fs-pdg---qllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
..|.-+|..||+.+-..+. |.. .+.-+... .|| .+++.++ ++.+-+.|. +|+++-.
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 4899999999998865442 311 12222233 578 5788788 999999998 7999876
Q ss_pred ec
Q 012410 339 FE 340 (464)
Q Consensus 339 l~ 340 (464)
.+
T Consensus 349 ~~ 350 (599)
T 1w6s_A 349 NK 350 (599)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.00047 Score=71.30 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=146.4
Q ss_pred cccCceEEEEeCCC---CcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCCCceeEEEEEcCC---CcEEE--
Q 012410 184 SLKWPGFVEFDDVN---GKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSSSHVPLKILSIED---GTVLK-- 254 (464)
Q Consensus 184 ~~~~~~~VaFs~pd---Gk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s~d~tIklWdi~t---G~~l~-- 254 (464)
.+..|..|+|+ |+ |.+.++-.. +.|+.+|+++++...... ......|+|+++.. |-+=|... ...+.
T Consensus 137 ~~~~P~gvavd-~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 137 AFDNIWRMMFD-PNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCSCCCEEEEC-TTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred ccCCCceEEEc-cccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 35678899997 64 766665444 889999999888765444 35688999988644 32222210 01011
Q ss_pred ----------EEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEc-c-cCCCceEEEEEcCCCc-EEEE
Q 012410 255 ----------VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVS-R-TEFMTPSAFIFLYENQ-LFLT 320 (464)
Q Consensus 255 ----------tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l-~-gh~~~v~sv~Fspdgq-llaS 320 (464)
.+.. ...-..+++.|. ++.|.++. .++.|+.+|..+|+....+ . +.......++|+|+|+ ++++
T Consensus 213 ~~~~~~~~~~~~~~-~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLCN-ARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEEE-CSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeeccccccc-cCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 1111 122356777773 46777664 7789999999888873322 1 2223456799999998 7777
Q ss_pred Ee-CCeEEEEeCC---Cce--EEEeccCC---CCcC-------CCCeeEEEE---------CCCCCEEEEEecCCCcccc
Q 012410 321 FR-NRTVAVWNFR---GEL--VTSFEDHL---LWHP-------DCNTNNIYI---------TSDQDLIISYCKAEPEDQW 375 (464)
Q Consensus 321 ~s-D~TIklWd~~---Ge~--l~tl~gH~---~~~~-------~~~v~svaf---------SpDg~~LaSgs~~~~~~~~ 375 (464)
-. ++.|..++.+ |++ ..++.|.. .+.. -..-..++| .++|.+.++-..
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~------- 363 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD------- 363 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-------
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-------
Confidence 77 8999998864 433 23444431 1100 001356999 788888887543
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEccCCCC-CCcccccCCCCCCccccccccccccccccccccCEEEEEEc-CCCCEEEEe
Q 012410 376 MEGSAGSINVSSILTGKCLAKINATNCS-PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD-EERNEIYTG 453 (464)
Q Consensus 376 ~~s~DgtIklWdi~tG~cl~tl~gh~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafs-pDg~~LaSg 453 (464)
.+.|+..+ .+|+ +.++-|.... ..+. .+| .......|..-+.|+++ ++|+.+++=
T Consensus 364 ----n~~I~~~~-~~G~-v~t~~G~g~~~~~G~---~dG--------------~~~~~~~~~~P~giavd~~~g~lyVaD 420 (433)
T 4hw6_A 364 ----SHTVRVLT-PEGR-VTTYAGRGNSREWGY---VDG--------------ELRSQALFNHPTSIAYDMKRKCFYIGD 420 (433)
T ss_dssp ----TTEEEEEC-TTSE-EEEEECCCTTCSSCC---BCE--------------ETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred ----CCEEEEEC-CCCC-EEEEEeCCCCCcccc---CCC--------------ccccccEeCCCcEEEEECCCCEEEEEe
Confidence 68899998 4785 4455443210 0000 000 00001224477899999 677777776
Q ss_pred eCCCcEEecc
Q 012410 454 NRHGLVHVWS 463 (464)
Q Consensus 454 s~DgtVrlWd 463 (464)
...+.||..+
T Consensus 421 ~~n~rIr~i~ 430 (433)
T 4hw6_A 421 CDNHRVRKIA 430 (433)
T ss_dssp GGGTEEEEEE
T ss_pred CCCCEEEEEe
Confidence 6777887654
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.32 E-value=9.3e-05 Score=81.44 Aligned_cols=193 Identities=9% Similarity=0.005 Sum_probs=106.6
Q ss_pred eEEEEEEe-eCCCEEEEEEeec-CCCCcccceeeEEEEEeccC-CCCCcccceeeccccCceEEEEeCCCCcEEEEecCC
Q 012410 131 VIRSLFYN-KNNDSLITVSVYA-SDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (464)
Q Consensus 131 ~i~Sv~fs-~~g~~l~svSa~~-sddfs~L~~~ti~l~~i~~G-~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D 207 (464)
.+.+..|| |||+.||-++... ++. .+++++++.+| +.... .++. . ...++|+ |||+.|++.+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~------~~l~v~dl~~g~~~l~~--~~~~-~---~~~~~Ws-pDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEV------YTIEFKRISDPSQTIAD--KVSG-T---NGEIVWG-PDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSC------EEEEEEETTCTTCCCCC--CEEE-E---CSCCEEC-SSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCce------EEEEEEECCCCCEeCCc--cccC-c---eeeEEEe-cCCCEEEEEEEC
Confidence 68899999 9999988755332 233 57999999999 64211 1111 1 2378897 899999988776
Q ss_pred CcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcE--EEEEee-CCcceeeEEEEccCCCeEEEEe---C
Q 012410 208 SIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTV--LKVFYH-LLHRNKKVDFIEQFNEKLLVKQ---E 281 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~--l~tl~~-~~~~~~~V~F~~~~~~~lla~s---~ 281 (464)
.+ +. ...|.++++.+++. ...+.. .......+.|+| ++.+|+..+ .
T Consensus 242 ~~--------~~-------------------~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~ 293 (751)
T 2xe4_A 242 ET--------LR-------------------ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPE 293 (751)
T ss_dssp TT--------CC-------------------EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSS
T ss_pred CC--------CC-------------------CCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCC
Confidence 31 00 01222333333321 111111 112234567777 455666543 3
Q ss_pred CCeEEEEECCCC--cE--EEEcccCCCceEEEEEcCCCcEEEEEe-C--C--eEEEEeCC-CceEEE-eccCCCCcCCCC
Q 012410 282 NENLQILDVRNA--EL--MEVSRTEFMTPSAFIFLYENQLFLTFR-N--R--TVAVWNFR-GELVTS-FEDHLLWHPDCN 350 (464)
Q Consensus 282 D~tIkIWDv~tg--~~--l~~l~gh~~~v~sv~FspdgqllaS~s-D--~--TIklWd~~-Ge~l~t-l~gH~~~~~~~~ 350 (464)
...|.++|+.++ +. .....++....+++.|..++++++.+. | + .|-++|+. +...+. +-.|... ..
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~---~~ 370 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSED---VF 370 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSS---EE
T ss_pred CceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCC---cE
Confidence 456888999886 34 444444555667776666677766666 5 3 44445554 233333 3334321 12
Q ss_pred eeEEEECCCCCEEEEEec
Q 012410 351 TNNIYITSDQDLIISYCK 368 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~ 368 (464)
+.++.+. .+.+++++..
T Consensus 371 l~~~~~~-~~~lv~~~~~ 387 (751)
T 2xe4_A 371 MESIAVR-SNYLVVAGRR 387 (751)
T ss_dssp EEEEEEC-SSEEEEEEEE
T ss_pred EEEEEEE-CCEEEEEEEe
Confidence 4556554 3345566554
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.28 E-value=0.00013 Score=78.77 Aligned_cols=253 Identities=9% Similarity=-0.039 Sum_probs=137.9
Q ss_pred EEEEee-CCCEEEEEEeecCCCCcccc--eeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecC-CCc
Q 012410 134 SLFYNK-NNDSLITVSVYASDNFSSLK--CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSI 209 (464)
Q Consensus 134 Sv~fs~-~g~~l~svSa~~sddfs~L~--~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~-D~t 209 (464)
++++.| +|++++..+ +..+.|.... -..+.+||..+++......... ....|-.++++. +||++++.|+. +.+
T Consensus 190 ~~av~~~~g~l~v~GG-~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~-~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSS-YRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMD-GNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEE-CCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEEC-TTSCEEEECSSSTTC
T ss_pred eEEEEecCCEEEEEec-ccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCC-CCCCEEEeCCCCCCc
Confidence 667777 777666633 2222221111 1368889998888643211111 112233357886 89999999984 568
Q ss_pred EEEEeCCCCeEEEE--ecCC-CEeEEEEeC--------C-C-----ceeEEEEEcCCCcEEEEE----e-eCCcceeeEE
Q 012410 210 YKVFDLKNYTMLYS--ISDK-HVQEIKIRS--------S-S-----HVPLKILSIEDGTVLKVF----Y-HLLHRNKKVD 267 (464)
Q Consensus 210 iKlWdl~tg~~l~t--l~~~-~V~~Vafs~--------s-~-----d~tIklWdi~tG~~l~tl----~-~~~~~~~~V~ 267 (464)
+.+||..+.+.... +... .-.++++-+ . . -..+.+||.++++-...- . -...+... .
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~-~ 345 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG-L 345 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG-G
T ss_pred eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc-e
Confidence 99999988765432 2211 111222211 1 1 157999999988654320 0 00000000 0
Q ss_pred EEccCCCeEEEEeC---------CCeEEEEECCCCcEEEEcccCC---------CceEEEEEc-CCCcEEEEEe-CC---
Q 012410 268 FIEQFNEKLLVKQE---------NENLQILDVRNAELMEVSRTEF---------MTPSAFIFL-YENQLFLTFR-NR--- 324 (464)
Q Consensus 268 F~~~~~~~lla~s~---------D~tIkIWDv~tg~~l~~l~gh~---------~~v~sv~Fs-pdgqllaS~s-D~--- 324 (464)
+.. ++..++.++. ...+..||..+.+.......+. ..-.++.|. .++++++.|+ +.
T Consensus 346 ~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 346 YRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 001 1222334443 3567899999888665433221 123566665 5899999987 54
Q ss_pred --------eEEEEeC-CCceEEEe--ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 325 --------TVAVWNF-RGELVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 325 --------TIklWd~-~Ge~l~tl--~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+|.+||. +++..... .-+.... --+.++.|||++++.|+......--....-.++.+||..+++.
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~----~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFART----FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB----SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc----cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence 7889998 45544333 1122221 1245678999999999852110000001136799999988776
Q ss_pred EE
Q 012410 394 LA 395 (464)
Q Consensus 394 l~ 395 (464)
..
T Consensus 501 ~~ 502 (656)
T 1k3i_A 501 YK 502 (656)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.17 E-value=0.0011 Score=67.01 Aligned_cols=167 Identities=10% Similarity=0.065 Sum_probs=111.5
Q ss_pred CCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 207 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
...|+..|+.+++....+. ......|+|.+. ..+.|..+++..+.....+.........+++.+. ++.|
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~-~g~l 173 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV-HDKL 173 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT-TTEE
T ss_pred CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC-CCeE
Confidence 3568888888766544444 356888998763 3356777777755443333322234467888764 4666
Q ss_pred EEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-C-CeEEEEeCCCceEEEec-cCCCCcCCCCe
Q 012410 277 LVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFE-DHLLWHPDCNT 351 (464)
Q Consensus 277 la~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D-~TIklWd~~Ge~l~tl~-gH~~~~~~~~v 351 (464)
... ...+.|.+.++........+......|..+++.|+ |.++.+-. + +.|...+.+|...+.+- ....+ -
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~-----P 248 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW-----P 248 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC-----E
T ss_pred EEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC-----e
Confidence 554 46789999997655544445555678999999985 56666665 5 78988898887666654 33334 5
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 352 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+.|+|+|++..|.-+.. ..+.|...|+.
T Consensus 249 nGlavd~~~~~lY~aD~----------~~~~I~~~d~d 276 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDA----------KHHVIERANLD 276 (386)
T ss_dssp EEEEEEGGGTEEEEEET----------TTTEEEEECTT
T ss_pred eeEEEeCCCCEEEEEEC----------CCCEEEEEeCC
Confidence 79999988776655432 36789999864
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.17 E-value=0.00071 Score=67.55 Aligned_cols=203 Identities=13% Similarity=0.135 Sum_probs=132.9
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------CceeEEEEEcCCCcEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------SHVPLKILSIEDGTVL 253 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~d~tIklWdi~tG~~l 253 (464)
+.+|..|+|++.++.+..+-...+.|..+++..+.....+. -.....|++.+. ....|.+.+.. |+..
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~ 150 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHR 150 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCce
Confidence 35677999985577777777778899999988665433333 234567888652 34578888876 4444
Q ss_pred EEEe-eCCcceeeEEEEccCCCeEEEEe-CC-CeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEE
Q 012410 254 KVFY-HLLHRNKKVDFIEQFNEKLLVKQ-EN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAV 328 (464)
Q Consensus 254 ~tl~-~~~~~~~~V~F~~~~~~~lla~s-~D-~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIkl 328 (464)
.++. ..+..-..+++.|. ++.|..+. .+ +.|...|+...............|..++|+| ++.++.+-+ .++|..
T Consensus 151 ~~l~~~~l~~P~~iavdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 151 KVLLWQSLEKPRAIALHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp EEEECTTCSCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEeCCCCCcceEEEecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 4433 33344588998874 56676654 44 7888888654443333344556899999997 555666666 889999
Q ss_pred EeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 329 WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 329 Wd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
.|++|.-.+++-.-...+ -..+++ .++.+.++-.. .+.|...|..+|+-+.++......|.
T Consensus 230 ~~~dG~~~~~~~~~~~~~----P~giav-~~~~ly~td~~-----------~~~V~~~~~~~G~~~~~i~~~~~~p~ 290 (349)
T 3v64_C 230 ANLDGSHRKAVISQGLPH----PFAITV-FEDSLYWTDWH-----------TKSINSANKFTGKNQEIIRNKLHFPM 290 (349)
T ss_dssp EETTSCSCEEEECSSCSS----EEEEEE-ETTEEEEEETT-----------TTEEEEEETTTCCSCEEEECSCSCCC
T ss_pred EeCCCCceEEEEeCCCCC----ceEEEE-ECCEEEEecCC-----------CCeEEEEEccCCCccEEeccCCCCCc
Confidence 999876555443222222 357888 45555555433 78898889789988888865433343
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.16 E-value=0.0027 Score=62.14 Aligned_cols=173 Identities=10% Similarity=0.062 Sum_probs=113.4
Q ss_pred CcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCC---CcEEEE-EeeCCcceeeEEEEccCC
Q 012410 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIED---GTVLKV-FYHLLHRNKKVDFIEQFN 273 (464)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~t---G~~l~t-l~~~~~~~~~V~F~~~~~ 273 (464)
..|+.-|+.+++....+. ......++|.+. ....|..+++.+ |....+ +.........+++.+. +
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~-~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI-H 88 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT-T
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec-C
Confidence 458888988877655555 456788888763 345677777764 232232 2222244578888763 4
Q ss_pred CeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-C-CeEEEEeCCCceEEEecc-CCCCcCC
Q 012410 274 EKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFED-HLLWHPD 348 (464)
Q Consensus 274 ~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D-~TIklWd~~Ge~l~tl~g-H~~~~~~ 348 (464)
+.|... ..++.|.+.|+...............|..+++.| +|.++.+-. . +.|...+.+|+..+.+.. ...+
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~--- 165 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW--- 165 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC---
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCC---
Confidence 666665 5789999999765554444444557899999998 566666665 4 789888998887776643 2334
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 349 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 349 ~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
-+.++++|+++.|.-+.. ..+.|...|+. |.-.+++
T Consensus 166 --P~gla~d~~~~~lY~~D~----------~~~~I~~~d~d-g~~~~~~ 201 (316)
T 1ijq_A 166 --PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 201 (316)
T ss_dssp --EEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEEE
T ss_pred --ceEEEEeccCCEEEEEEC----------CCCeEEEEecC-CCceEEE
Confidence 579999998877765432 26789999974 5444444
No 272
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.16 E-value=0.00016 Score=76.24 Aligned_cols=154 Identities=10% Similarity=0.095 Sum_probs=104.9
Q ss_pred CCeEEEEe-CCCeEEEEECCCC----cEEEEcc-------cCCCceEEEEEcCCCcEEEEEe-C------CeEEEEeC-C
Q 012410 273 NEKLLVKQ-ENENLQILDVRNA----ELMEVSR-------TEFMTPSAFIFLYENQLFLTFR-N------RTVAVWNF-R 332 (464)
Q Consensus 273 ~~~lla~s-~D~tIkIWDv~tg----~~l~~l~-------gh~~~v~sv~FspdgqllaS~s-D------~TIklWd~-~ 332 (464)
..+|.+.+ .+.+|.+.|+.+. +..++.+ .....+..+..+||| +++|.. | +.|-+.|. +
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 45666654 8899999999877 7777773 122367788999999 888876 6 79999998 6
Q ss_pred CceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC---------CccccccCCCCeEEEEeCCCCeEEEEEccCCCC
Q 012410 333 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE---------PEDQWMEGSAGSINVSSILTGKCLAKINATNCS 403 (464)
Q Consensus 333 Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~---------~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~ 403 (464)
++.+.+++--..... + -..+.|+||++.++|..-.. +++-.. ..+.+|.+||+.+++.+++|.--..
T Consensus 174 ~~v~~~~~~~~~~~~-~-~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~-~~~d~V~v~D~~~~k~~~tI~vg~~- 249 (462)
T 2ece_A 174 FEPLGKWEIDRGDQY-L-AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD-RYGNRIHFWDLRKRKRIHSLTLGEE- 249 (462)
T ss_dssp CCEEEECCSBCTTCC-C-CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH-HSCCEEEEEETTTTEEEEEEESCTT-
T ss_pred CeEEEEEccCCCCcc-c-cceEEECCCCCEEEEccCcCccccccccchhhhhh-ccCCEEEEEECCCCcEeeEEecCCC-
Confidence 999999972211100 0 13477899999999874100 010000 1268999999999999998854210
Q ss_pred CCcccccCCCCCCccccccccccccccccccccCEEEE--EEcCCCCEEEEeeC------CCcEEec
Q 012410 404 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL--FYDEERNEIYTGNR------HGLVHVW 462 (464)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl--afspDg~~LaSgs~------DgtVrlW 462 (464)
|. ...-| +|+|||++++.+++ +++|-+|
T Consensus 250 ---------g~----------------------~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 250 ---------NR----------------------MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp ---------EE----------------------EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred ---------CC----------------------ccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 00 12234 45999999999885 5577654
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.14 E-value=0.0026 Score=63.41 Aligned_cols=173 Identities=11% Similarity=0.083 Sum_probs=112.7
Q ss_pred CCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 207 DSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
...|+..++...+....+. ......|+|.+. ..+.|..+++.++.....+.........+++.+. ++.|
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~-~g~l 130 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV-HDKL 130 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT-TTEE
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC-CCeE
Confidence 3457777887655544444 356788888763 3346666777655433333322234467888763 4666
Q ss_pred EEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-C-CeEEEEeCCCceEEEeccC-CCCcCCCCe
Q 012410 277 LVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFEDH-LLWHPDCNT 351 (464)
Q Consensus 277 la~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D-~TIklWd~~Ge~l~tl~gH-~~~~~~~~v 351 (464)
... ...+.|.+.|+........+......|..+++.| +|.++.+-. + +.|...+.+|...+++-.. ..+ -
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~-----P 205 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW-----P 205 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSC-----E
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC-----c
Confidence 665 4778999999765544444445567899999998 566777766 6 8899999988877766432 333 5
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 352 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
+.|+|+|++..|.-+.. ..++|...|+ .|.-..+
T Consensus 206 nGla~d~~~~~lY~aD~----------~~~~I~~~~~-dG~~~~~ 239 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDA----------KHHVIERANL-DGSHRKA 239 (349)
T ss_dssp EEEEEETTTTEEEEEET----------TTTEEEEEET-TSCSCEE
T ss_pred ceEEEeCCCCEEEEEEC----------CCCEEEEEeC-CCCceEE
Confidence 79999997776655432 3678999986 4443333
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.14 E-value=0.00053 Score=69.40 Aligned_cols=203 Identities=13% Similarity=0.141 Sum_probs=133.1
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeCC---------CceeEEEEEcCCCcEE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRSS---------SHVPLKILSIEDGTVL 253 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~s---------~d~tIklWdi~tG~~l 253 (464)
+.+|..|+|++.+|.+..+-...+.|..+++..+.....+.. .....|++.+. ....|.+.++. |...
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~ 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHR 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT-SCSC
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCce
Confidence 466779999855777777777888999999876654333332 34566777652 33467777775 4433
Q ss_pred EEEe-eCCcceeeEEEEccCCCeEEEEe-CC-CeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEE
Q 012410 254 KVFY-HLLHRNKKVDFIEQFNEKLLVKQ-EN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAV 328 (464)
Q Consensus 254 ~tl~-~~~~~~~~V~F~~~~~~~lla~s-~D-~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIkl 328 (464)
.++. ..+..-..|++.|. ++.|..+. .+ +.|...|+...............|..++|+| +++++.+-+ .+.|..
T Consensus 194 ~~l~~~~l~~P~giavdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~ 272 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 272 (386)
T ss_dssp EEEECSSCSCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EEeecCCCCCCcEEEEEcC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence 3333 33344588888874 56776654 44 7888888765444444445566899999996 555666666 889999
Q ss_pred EeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 329 WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 329 Wd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
.|++|.-..++-.....+ -..|++ .++.+.++-.. .+.|...|..+|+-+.++......|.
T Consensus 273 ~d~dG~~~~~~~~~~~~~----P~giav-~~~~ly~td~~-----------~~~V~~~~~~~G~~~~~i~~~~~~p~ 333 (386)
T 3v65_B 273 ANLDGSHRKAVISQGLPH----PFAITV-FEDSLYWTDWH-----------TKSINSANKFTGKNQEIIRNKLHFPM 333 (386)
T ss_dssp ECTTSCSCEEEECSSCSS----EEEEEE-ETTEEEEEETT-----------TTEEEEEETTTCCSCEEEECSCSCCC
T ss_pred EeCCCCeeEEEEECCCCC----ceEEEE-ECCEEEEeeCC-----------CCeEEEEECCCCcceEEEccCCCCCc
Confidence 999876555443322333 357888 45556655433 78899999889998888865433344
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.0023 Score=65.85 Aligned_cols=247 Identities=13% Similarity=0.137 Sum_probs=130.1
Q ss_pred ceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCccc
Q 012410 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (464)
Q Consensus 99 ~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~ 178 (464)
+.|......+.++.++.. +..+..+.. ....-..|+|+++|+.|.++. ...+ ..+..-++..+.|......
T Consensus 150 g~Lyv~d~~~~I~~id~~-~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad--~~~~----~~~~~v~~~~~~g~~~~~~- 220 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFE-KEYVSTVYS-GLSKVRTICWTHEADSMIITN--DQNN----NDRPNNYILTRESGFKVIT- 220 (430)
T ss_dssp EEEEEEEBTEEEEEEETT-TTEEEEEEC-CCSCEEEEEECTTSSEEEEEE--CCSC----TTSEEEEEEEGGGTSCSEE-
T ss_pred CeEEEEeCCCcEEEEECC-CCEEEEEec-CCCCcceEEEeCCCCEEEEEe--CCCC----cccceEEEEeCCCceeeee-
Confidence 344444444778888844 444555534 344578999999999666633 2111 1122334444666653211
Q ss_pred ceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEE--EEecC-CCEeEEEEeCCCceeEEEEEcCCCcEEE
Q 012410 179 LFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTML--YSISD-KHVQEIKIRSSSHVPLKILSIEDGTVLK 254 (464)
Q Consensus 179 l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l--~tl~~-~~V~~Vafs~s~d~tIklWdi~tG~~l~ 254 (464)
.+. .+.+|..++++ | +|.++++-..++.|..+|..++... ..+.. .+-..|+|+|+.. .+-+=|..+
T Consensus 221 ~l~--~~~~p~giavd-p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~-~lyv~d~~~----- 291 (430)
T 3tc9_A 221 ELT--KGQNCNGAETH-PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN-YAYIVVVNQ----- 291 (430)
T ss_dssp EEE--ECSSCCCEEEC-TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS-EEEEEETTT-----
T ss_pred eec--cCCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC-EEEEEECCC-----
Confidence 122 35788899997 7 8988887777888999998776642 12211 2345566665521 122222221
Q ss_pred EEeeCCcceeeEEEEccCC----CeEEEEeCCCeEEEEECCCCcEEEEcccCCCceE-EEEEc--------CCCcEEEEE
Q 012410 255 VFYHLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPS-AFIFL--------YENQLFLTF 321 (464)
Q Consensus 255 tl~~~~~~~~~V~F~~~~~----~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~v~-sv~Fs--------pdgqllaS~ 321 (464)
+++..+++....+ -..+++..... ....| ......+..|. .++.. ++|.++++-
T Consensus 292 ------~~I~~~~~d~~~~~~~~~~~~ag~~g~~----g~~dg---~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD 358 (430)
T 3tc9_A 292 ------HYILRSDYDWKTKRLTTPYIVCGQQGAK----DWVDG---VGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCD 358 (430)
T ss_dssp ------TEEEEEEEETTTTEECCCEEEEECTTCB----CCBCE---EGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEE
T ss_pred ------CEEEEEeCCcccccccceEEEeccCCCC----CCCCC---CCcceEeCCCcceEEEccccccccCCCCeEEEEE
Confidence 2222222211000 01122210000 00000 01122345677 55553 568999988
Q ss_pred e-CCeEEEEeCCCceEEEeccC-----CCCcCC--------CCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 322 R-NRTVAVWNFRGELVTSFEDH-----LLWHPD--------CNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 322 s-D~TIklWd~~Ge~l~tl~gH-----~~~~~~--------~~v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
. ++.|+.+|.+|+... +.|. ..+... ..=+.|+++| +|.++++-.. ...|+..
T Consensus 359 ~~n~~I~~i~~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~-----------n~rIr~i 426 (430)
T 3tc9_A 359 RENHCIRILTPQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE-----------NRRIRKI 426 (430)
T ss_dssp GGGTEEEEECTTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG-----------GTEEEEE
T ss_pred CCCcEEEEECCCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC-----------CCeEEEE
Confidence 8 899999998886544 4332 110000 0146899999 5777766433 5677776
Q ss_pred eC
Q 012410 387 SI 388 (464)
Q Consensus 387 di 388 (464)
++
T Consensus 427 ~~ 428 (430)
T 3tc9_A 427 GY 428 (430)
T ss_dssp EE
T ss_pred cc
Confidence 64
No 276
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.00078 Score=71.66 Aligned_cols=250 Identities=12% Similarity=0.127 Sum_probs=146.5
Q ss_pred cccCceEEEEeCC--CCcEEEEecCCCcEEEEeCCCCeEEEEecC-----CCEeEEEE-------eCCCc----------
Q 012410 184 SLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKI-------RSSSH---------- 239 (464)
Q Consensus 184 ~~~~~~~VaFs~p--dGk~LaSgs~D~tiKlWdl~tg~~l~tl~~-----~~V~~Vaf-------s~s~d---------- 239 (464)
.+..|..++|+ | ++++.++....+.|++.|+++++....+.. +....|+| +++.+
T Consensus 137 ~~~~p~~la~d-p~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 137 GFSDNGRLAFD-PLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp CCCSEEEEEEE-TTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred ccCCCCEEEEc-cCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 35678899998 6 355555544446788899988776554432 24789999 76432
Q ss_pred -----eeEEEEEcCC-CcEE-----EEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECC-------CCcE-----
Q 012410 240 -----VPLKILSIED-GTVL-----KVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR-------NAEL----- 295 (464)
Q Consensus 240 -----~tIklWdi~t-G~~l-----~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~-------tg~~----- 295 (464)
..|.+.+... |+.. +++... .+-..+++.|. ++.|.+. ..++.|..+|+. +++.
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 2255554343 3331 222211 22357777773 5666665 588899999998 6664
Q ss_pred ------EEE-c-ccCCCceEEEEEcCCCc-EEEEEe-CCeEEEEeCCC---ce--EEEeccC---CCCcCC------C-C
Q 012410 296 ------MEV-S-RTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRG---EL--VTSFEDH---LLWHPD------C-N 350 (464)
Q Consensus 296 ------l~~-l-~gh~~~v~sv~Fspdgq-llaS~s-D~TIklWd~~G---e~--l~tl~gH---~~~~~~------~-~ 350 (464)
++. + .+...++..++|+|+|+ ++++-+ .+.|+.+|.+| .+ ..++.|. ..+... . .
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 222 1 22345789999999999 566766 89999977643 22 1455543 111000 0 0
Q ss_pred ee-EEEEC-------CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCC---Cccc-ccCCCCCCcc
Q 012410 351 TN-NIYIT-------SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP---KVDD-ELGSSSTGKS 418 (464)
Q Consensus 351 v~-svafS-------pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~---~~~~-~~~~~~~~~~ 418 (464)
-. .++.. ++|.+.++=+. ...||..+ .+|+ +.++-|..... .... -..+|
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~-----------N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG----- 435 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRL-----------NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDG----- 435 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGG-----------GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCE-----
T ss_pred CeEEEEEccccccccCCCeEEEEECC-----------CCEEEEEe-CCCC-EEEEecccccccccCccccccCCC-----
Confidence 12 34554 56777776443 68999998 5885 56776642100 0000 00000
Q ss_pred ccccccccccccccccccCEEEEEEcCC-CCEEEEeeCCCcEEecc
Q 012410 419 KKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~V~slafspD-g~~LaSgs~DgtVrlWd 463 (464)
-......|..-+.|+++|+ |+..++=+....||..+
T Consensus 436 ---------~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 436 ---------DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp ---------ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ---------CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 0001123447789999997 77666666777888654
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.07 E-value=0.0087 Score=58.48 Aligned_cols=197 Identities=8% Similarity=0.040 Sum_probs=127.4
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC---CeEEE-EecC--CCEeEEEEeCC---------CceeEEEEEcCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLY-SISD--KHVQEIKIRSS---------SHVPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t---g~~l~-tl~~--~~V~~Vafs~s---------~d~tIklWdi~t 249 (464)
+..|..++|++.++++..+....+.|..+|+.+ +.... .+.. .....||+.+. ....|.+.+..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~- 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK- 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC-
Confidence 456779999844566777777789999999876 23222 2322 35678888642 34578888876
Q ss_pred CcEEEEEe-eCCcceeeEEEEccCCCeEEEEeC-C-CeEEEEECCCCcEEEEc-ccCCCceEEEEEcCCC-cEEEEEe-C
Q 012410 250 GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQE-N-ENLQILDVRNAELMEVS-RTEFMTPSAFIFLYEN-QLFLTFR-N 323 (464)
Q Consensus 250 G~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s~-D-~tIkIWDv~tg~~l~~l-~gh~~~v~sv~Fspdg-qllaS~s-D 323 (464)
|+..+++- .....-..+++.|. ++.|..+.. . +.|...++. |...+++ ......+..++++|++ +++.+-+ .
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~ 185 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCC
Confidence 54444443 23345588898874 567766653 2 688888864 5544443 3455789999999865 5556655 8
Q ss_pred CeEEEEeCCCceEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 324 RTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 324 ~TIklWd~~Ge~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
+.|...|++|.-.+++... ...+ -..+++. .+.+.++-.. .+.|...|..+|+-+.++...
T Consensus 186 ~~I~~~d~dg~~~~~~~~~~~~~~~----P~giav~-~~~ly~~d~~-----------~~~V~~~~~~~g~~~~~i~~~ 248 (316)
T 1ijq_A 186 HSISSIDVNGGNRKTILEDEKRLAH----PFSLAVF-EDKVFWTDII-----------NEAIFSANRLTGSDVNLLAEN 248 (316)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSS----EEEEEEE-TTEEEEEETT-----------TTEEEEEETTTCCCCEEEECS
T ss_pred CeEEEEecCCCceEEEeecCCccCC----cEEEEEE-CCEEEEEECC-----------CCeEEEEeCCCCcceEEEecC
Confidence 8999999987655555321 2222 3578884 4555555432 789999998899888887654
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.04 E-value=0.0022 Score=66.25 Aligned_cols=230 Identities=10% Similarity=0.091 Sum_probs=128.2
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~ 177 (464)
|++.++ ...+.++.++..+|+..... . .......|+++++|+.+++ . .... ..+...++....+.....
T Consensus 153 g~Lyv~-D~~~~I~~id~~~g~v~~~~-~-~~~~P~giavd~dG~lyVa-d--~~~~----~~~~gv~~~~~~~~~~~~- 221 (433)
T 4hw6_A 153 DDLYWV-GQRDAFRHVDFVNQYVDIKT-T-NIGQCADVNFTLNGDMVVV-D--DQSS----DTNTGIYLFTRASGFTER- 221 (433)
T ss_dssp CEEEEE-CBTSCEEEEETTTTEEEEEC-C-CCSCEEEEEECTTCCEEEE-E--CCSC----TTSEEEEEECGGGTTCCE-
T ss_pred CEEEEE-eCCCCEEEEECCCCEEEEee-c-CCCCccEEEECCCCCEEEE-c--CCCC----cccceEEEEECCCCeecc-
Confidence 444433 33377888886666655443 2 3445899999999994444 2 1110 011222233344433211
Q ss_pred cceeeccccCceEEEEeCC-CCcEEEEecCCCcEEEEeCCCCeEEEEec---C-CCEeEEEEeCCCceeEEEEEcCCCcE
Q 012410 178 ALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---D-KHVQEIKIRSSSHVPLKILSIEDGTV 252 (464)
Q Consensus 178 ~l~~~~~~~~~~~VaFs~p-dGk~LaSgs~D~tiKlWdl~tg~~l~tl~---~-~~V~~Vafs~s~d~tIklWdi~tG~~ 252 (464)
..+. .+.+|..++++ | +|.+.++-..++.|..+|..+|+....+. . ..-..|+|+|+
T Consensus 222 ~~~~--~~~~P~giavd-~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd--------------- 283 (433)
T 4hw6_A 222 LSLC--NARGAKTCAVH-PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT--------------- 283 (433)
T ss_dssp EEEE--ECSSBCCCEEC-TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT---------------
T ss_pred cccc--ccCCCCEEEEe-CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC---------------
Confidence 1122 35778899997 7 88888777777888888887776532221 1 11123444443
Q ss_pred EEEEeeCCcceeeEEEEccCCCeEEEE-eCCCeEEEEECC--CCcEE--EE---------------cccCCCceEEEEE-
Q 012410 253 LKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--NAELM--EV---------------SRTEFMTPSAFIF- 311 (464)
Q Consensus 253 l~tl~~~~~~~~~V~F~~~~~~~lla~-s~D~tIkIWDv~--tg~~l--~~---------------l~gh~~~v~sv~F- 311 (464)
+..|.++ ...+.|+.+|.. ++++. .+ ....+..|..++|
T Consensus 284 --------------------G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~ 343 (433)
T 4hw6_A 284 --------------------GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFV 343 (433)
T ss_dssp --------------------SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEE
T ss_pred --------------------CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEE
Confidence 2223332 234444444432 22110 11 1123567999999
Q ss_pred --------cCCCcEEEEEe-CCeEEEEeCCCceEEEeccCCC-----CcCC--------CCeeEEEEC-CCCCEEEEEec
Q 012410 312 --------LYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL-----WHPD--------CNTNNIYIT-SDQDLIISYCK 368 (464)
Q Consensus 312 --------spdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~-----~~~~--------~~v~svafS-pDg~~LaSgs~ 368 (464)
.++|.++++-. ++.|+..+.+|+.. ++.|... +... -.-+.|++. ++|.++++=..
T Consensus 344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp ECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred ccccccccCCCCcEEEEECCCCEEEEECCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 88999999988 89999999889544 4444311 0000 013689999 77777776443
Q ss_pred CCCccccccCCCCeEEEEeC
Q 012410 369 AEPEDQWMEGSAGSINVSSI 388 (464)
Q Consensus 369 ~~~~~~~~~s~DgtIklWdi 388 (464)
.+.|+..++
T Consensus 423 -----------n~rIr~i~~ 431 (433)
T 4hw6_A 423 -----------NHRVRKIAP 431 (433)
T ss_dssp -----------GTEEEEEEE
T ss_pred -----------CCEEEEEec
Confidence 567777664
No 279
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.99 E-value=4.4e-05 Score=84.07 Aligned_cols=111 Identities=9% Similarity=0.151 Sum_probs=70.5
Q ss_pred eeEEEE-ccCCCeEEEEe-----CCCeEEEEECCCC-cEEEEcccCC-CceEEEEEcCCCcEEEEEe-C-----CeEEEE
Q 012410 264 KKVDFI-EQFNEKLLVKQ-----ENENLQILDVRNA-ELMEVSRTEF-MTPSAFIFLYENQLFLTFR-N-----RTVAVW 329 (464)
Q Consensus 264 ~~V~F~-~~~~~~lla~s-----~D~tIkIWDv~tg-~~l~~l~gh~-~~v~sv~FspdgqllaS~s-D-----~TIklW 329 (464)
..++|+ | ++.+|+.+. +..+|+++|+.+| +.+. .+. ....+++|+|||+.|+-.+ | ..|.++
T Consensus 177 ~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 177 MEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred eeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 456676 5 344444332 2346999999999 7321 111 1134678999999888777 6 367888
Q ss_pred eC-CCce--EEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 330 NF-RGEL--VTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 330 d~-~Ge~--l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
++ +++. ...+++ +..+ ..++.+||||++|+-.+.+ .....|.++|+.++
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~-----~~~~~~SpDg~~l~~~~~~--------~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLF-----SAFMYKAADTNTLCIGSQS--------PETAEVHLLDLRKG 305 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTC-----EEEEEECTTSSEEEEEEEC--------SSCEEEEEEESSSC
T ss_pred ECCCCchhcEEEEecCCCce-----EEEEEECCCCCEEEEEecC--------CCCceEEEEECCCC
Confidence 88 4532 233332 2234 4578999999999876641 12456888998776
No 280
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.0035 Score=66.64 Aligned_cols=262 Identities=16% Similarity=0.114 Sum_probs=142.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecC--CCceEEEEEE-------eeCCCEEEEEEeecCCCCcccceeeEEEEEe
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVS--PDEVIRSLFY-------NKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~--~~~~i~Sv~f-------s~~g~~l~svSa~~sddfs~L~~~ti~l~~i 168 (464)
+++.++-...+.+++.|..+++....+..+ .-+-.+.|+| +++|+.|.++. -..+ .....+.+.+-+.
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad--~~~~-~~~~~~~V~~i~r 228 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI--DYDG-KGDESPSVYIIKR 228 (496)
T ss_dssp EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE--CCCT-TGGGEEEEEEEEC
T ss_pred CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe--CCCC-CcccCceEEEEec
Confidence 344444444466787775554444333222 1234899999 99999777733 2211 0011123333332
Q ss_pred cc-CCCCC-c-ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCC-------CCeE--------------EEEe
Q 012410 169 RR-GKPDS-G-FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-------NYTM--------------LYSI 224 (464)
Q Consensus 169 ~~-G~~~~-~-~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~-------tg~~--------------l~tl 224 (464)
.. |++.. . ...+. ...||..+++++.+|.++++-..++.|..+|++ ++.. +.++
T Consensus 229 ~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~ 306 (496)
T 3kya_A 229 NADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI 306 (496)
T ss_dssp CTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC
T ss_pred CCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec
Confidence 22 34421 0 01222 347888999973377777777788889999997 6654 2333
Q ss_pred cC-CCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC----CeEEEEe--CCCeEEEEECCCCcEEE
Q 012410 225 SD-KHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN----EKLLVKQ--ENENLQILDVRNAELME 297 (464)
Q Consensus 225 ~~-~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~----~~lla~s--~D~tIkIWDv~tg~~l~ 297 (464)
.. .+-..|+|+|+.. .+.|=|.. .|+++.+++....+ ..++++. ..+.. | |.
T Consensus 307 ~~~~~p~~ia~~p~G~-~lYvaD~~-----------~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~---D---G~--- 365 (496)
T 3kya_A 307 ADPSWEFQIFIHPTGK-YAYFGVIN-----------NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR---D---DV--- 365 (496)
T ss_dssp SSSSCCEEEEECTTSS-EEEEEETT-----------TTEEEEEEEETTTTEECCCEEEEEBTTBCCCB---C---CB---
T ss_pred CCCCCceEEEEcCCCC-EEEEEeCC-----------CCEEEEEecCCCcceecccEEecCCCCCCccc---C---Cc---
Confidence 32 3446777776622 23333322 25666665543211 1234442 11110 1 11
Q ss_pred EcccCCCceEE-EEEc-------CCCcEEEEEe-CCeEEEEeCCCceEEEeccCCC-----------CcCC--------C
Q 012410 298 VSRTEFMTPSA-FIFL-------YENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL-----------WHPD--------C 349 (464)
Q Consensus 298 ~l~gh~~~v~s-v~Fs-------pdgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~-----------~~~~--------~ 349 (464)
-....+..|.. ++.. ++|.++++=. ++.|+..+.+|. +.|+.|... .... -
T Consensus 366 ~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~ 444 (496)
T 3kya_A 366 GTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFR 444 (496)
T ss_dssp GGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCS
T ss_pred ccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcC
Confidence 11234567884 4444 6789998888 999999998895 567765411 0000 0
Q ss_pred CeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 350 NTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 350 ~v~svafSpD-g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.-..|++.|+ |.+.++=+. ...||..++....|++-.
T Consensus 445 ~P~gIavd~~~g~lyVaD~~-----------N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 445 DVSGLVYDDVKEMFYVHDQV-----------GHTIRTISMEQEENVAGD 482 (496)
T ss_dssp SEEEEEEETTTTEEEEEETT-----------TTEEEEEEECCCC-----
T ss_pred CCcEEEEECCCCEEEEEeCC-----------CCEEEEEECCCCcccccC
Confidence 1358999997 877776433 689999999888887654
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.90 E-value=0.011 Score=58.53 Aligned_cols=224 Identities=15% Similarity=0.165 Sum_probs=138.3
Q ss_pred eeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEE-Eec--CCCEeEEEEeC-
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SIS--DKHVQEIKIRS- 236 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~-tl~--~~~V~~Vafs~- 236 (464)
+.|+..++..+..... .+.. .+..+-.|+|+..+|++..+-...+.|..+++.++.... .+. -.....||+.+
T Consensus 13 ~~I~~i~l~~~~~~~~-~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 13 RDLRLVDATNGKENAT-IVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEETTCTTSCCE-EEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred CeEEEEECCCCceEEE-EEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 4566666554432111 1121 224455899985467777777788899999988663211 111 23456777764
Q ss_pred --------CCceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCc
Q 012410 237 --------SSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 237 --------s~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
.....|.+.+.. |...+++. .....-..+++.|. ++.|..+. ..+.|...|+...............
T Consensus 90 ~g~ly~~d~~~~~I~~~~~d-G~~~~~l~~~~~~~P~giavdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~ 167 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 167 (318)
T ss_dssp TTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSSEEEEEEEGG-GTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC
T ss_pred CCeEEEEECCCCEEEEEECC-CCcEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 234578888876 54444443 33344578888874 46776654 4678888886543333333444578
Q ss_pred eEEEEEcC-CCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~Fsp-dgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
+..++|+| +++++.+-+ .+.|...|++|.-.+++-.....+ -..+++.. +.+..+-. ..+.|
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~----P~glav~~-~~lywtd~-----------~~~~V 231 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH----PFALTLFE-DILYWTDW-----------STHSI 231 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSC----EEEEEEET-TEEEEEET-----------TTTEE
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCC----ceEEEEeC-CEEEEEec-----------CCCeE
Confidence 99999998 455666666 889999999876555554322333 35777743 34444432 27899
Q ss_pred EEEeCCCCeEEEEEccCCCCCC
Q 012410 384 NVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 384 klWdi~tG~cl~tl~gh~~~~~ 405 (464)
...|..+|+-++++......|.
T Consensus 232 ~~~~~~~G~~~~~i~~~~~~P~ 253 (318)
T 3sov_A 232 LACNKYTGEGLREIHSDIFSPM 253 (318)
T ss_dssp EEEETTTCCSCEEEECCCSSCC
T ss_pred EEEECCCCCceEEEeCCCCCCc
Confidence 9999989988777755433333
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.89 E-value=0.018 Score=58.50 Aligned_cols=200 Identities=8% Similarity=0.033 Sum_probs=127.3
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCC----eEEEEec--CCCEeEEEEeC---------CCceeEEEEEcCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKHVQEIKIRS---------SSHVPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg----~~l~tl~--~~~V~~Vafs~---------s~d~tIklWdi~t 249 (464)
++.|..|+|+..++++..+-...+.|..+++... .....+. -.....||+.+ .....|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 4567799998446767777777889999998752 2222222 24567888865 2345788888764
Q ss_pred CcEEEEEeeCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc-EEEEEe-CCe
Q 012410 250 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRT 325 (464)
Q Consensus 250 G~~l~tl~~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq-llaS~s-D~T 325 (464)
+.....+...+..-..|++.|. ++.|..+. ....|...++..........+....|..++|+|+++ ++.+-. .++
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETT-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEeCCCCCcceEEEecc-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 4333333333345588898884 56776654 347888889765444444445557899999997655 555555 889
Q ss_pred EEEEeCCCceEEEecc-C-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 326 VAVWNFRGELVTSFED-H-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 326 IklWd~~Ge~l~tl~g-H-~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
|...|++|.-.+++-. + ...+ -..|++ ..+.+..+-.. .++|...|..+|+-+.++....
T Consensus 270 I~~~d~dG~~~~~~~~~~~~l~~----P~gl~v-~~~~lywtd~~-----------~~~V~~~~~~~G~~~~~i~~~~ 331 (400)
T 3p5b_L 270 ISSIDVNGGNRKTILEDEKRLAH----PFSLAV-FEDKVFWTDII-----------NEAIFSANRLTGSDVNLLAENL 331 (400)
T ss_dssp EEEEETTSCCCEEEEECSSTTSS----EEEEEE-ETTEEEEEESS-----------SCSEEEEESSSCCCCEEEECSC
T ss_pred EEEEeCCCCccEEEEeCCCCCCC----CEEEEE-eCCEEEEecCC-----------CCeEEEEEcCCCCceEEEecCC
Confidence 9999998765555532 2 1222 246766 23344444332 6889999988998888886443
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.86 E-value=0.0082 Score=58.94 Aligned_cols=212 Identities=9% Similarity=0.002 Sum_probs=119.1
Q ss_pred eEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE--ec----CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEee----
Q 012410 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--IS----DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYH---- 258 (464)
Q Consensus 189 ~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t--l~----~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~---- 258 (464)
..|+|. +++..++.| .++.| +.....|+--.. +. ...+.+|+|.|. .+-+- -+.|.++++-.+
T Consensus 39 ~~v~~~-~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~---~~~~~-g~~g~i~~S~DgG~tW 111 (327)
T 2xbg_A 39 LDMSFI-DRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGN---EGWIV-GEPPIMLHTTDGGQSW 111 (327)
T ss_dssp EEEEES-SSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETT---EEEEE-EETTEEEEESSTTSSC
T ss_pred EEEEEC-CCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCC---eEEEE-ECCCeEEEECCCCCCc
Confidence 378896 567777754 56654 333333432111 11 236888998762 11110 122333333211
Q ss_pred --------CCcceeeEEEEccCCCeEEEEeCCCeE-EEEECCCCc-EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEE
Q 012410 259 --------LLHRNKKVDFIEQFNEKLLVKQENENL-QILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 327 (464)
Q Consensus 259 --------~~~~~~~V~F~~~~~~~lla~s~D~tI-kIWDv~tg~-~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIk 327 (464)
+......|.+.++ +.+++.+.++.| +-+| .|+ -.....++...+.+++|.|++++++.+. ....+
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~ 187 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGN--GSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS 187 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEET--TEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred eECccccCCCCCeEEEEEECC--CCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence 1123466776653 566666666655 4344 343 2333345556788999999999998887 55556
Q ss_pred EEeCCCceEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCc
Q 012410 328 VWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 406 (464)
Q Consensus 328 lWd~~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~ 406 (464)
-+|-.|+-.+.+. ++... +.+++++|+|++++.+. +|.|.+++...|+-...+..-.- +
T Consensus 188 S~d~gG~tW~~~~~~~~~~-----~~~~~~~~~g~~~~~~~------------~G~~~~s~~D~G~tW~~~~~~~~-~-- 247 (327)
T 2xbg_A 188 TWEPGQTAWEPHNRTTSRR-----LHNMGFTPDGRLWMIVN------------GGKIAFSDPDNSENWGELLSPLR-R-- 247 (327)
T ss_dssp EECTTCSSCEEEECCSSSC-----EEEEEECTTSCEEEEET------------TTEEEEEETTEEEEECCCBCTTS-S--
T ss_pred EeCCCCCceeECCCCCCCc-----cceeEECCCCCEEEEeC------------CceEEEecCCCCCeeEeccCCcc-c--
Confidence 6664455444332 22222 78999999999887653 78888875223553332211000 0
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcE
Q 012410 407 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 459 (464)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtV 459 (464)
.-..+.+|+|.|+++.++.|. +|.|
T Consensus 248 ---------------------------~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 248 ---------------------------NSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp ---------------------------CCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred ---------------------------CCcceEEEEecCCCEEEEEeC-CCeE
Confidence 001588999999988877765 5655
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.84 E-value=0.027 Score=55.18 Aligned_cols=150 Identities=9% Similarity=0.043 Sum_probs=86.9
Q ss_pred eeeEEEEccCCCeEEEEe-CCCeEEEEEC--CCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCC-CceEEE
Q 012410 263 NKKVDFIEQFNEKLLVKQ-ENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTS 338 (464)
Q Consensus 263 ~~~V~F~~~~~~~lla~s-~D~tIkIWDv--~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~-Ge~l~t 338 (464)
+..++|.++ +.+++.+ .....+-+|- .+=+.+. .+....+.+++++|++++++.+.++.|.+++.+ |+-.+.
T Consensus 165 ~~~~~~~~~--~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 165 MRNLNRSPS--GEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGE 240 (327)
T ss_dssp EEEEEECTT--SCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECC
T ss_pred eEEEEEcCC--CcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEe
Confidence 355666653 4555544 3344444552 1222232 234457889999999999887779999888644 664443
Q ss_pred eccC-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCc
Q 012410 339 FEDH-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 417 (464)
Q Consensus 339 l~gH-~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~ 417 (464)
+..- .... -.+.+|++.|+++++|.+. +++|. +....|+--..+.....
T Consensus 241 ~~~~~~~~~--~~~~~v~~~~~~~~~~~g~------------~g~i~-~S~DgG~tW~~~~~~~~--------------- 290 (327)
T 2xbg_A 241 LLSPLRRNS--VGFLDLAYRTPNEVWLAGG------------AGALL-CSQDGGQTWQQDVDVKK--------------- 290 (327)
T ss_dssp CBCTTSSCC--SCEEEEEESSSSCEEEEES------------TTCEE-EESSTTSSCEECGGGTT---------------
T ss_pred ccCCcccCC--cceEEEEecCCCEEEEEeC------------CCeEE-EeCCCCcccEEcCccCC---------------
Confidence 3211 0000 1277899999999998874 67773 33334554444332110
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 418 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
. -..+.+|+|.++++ ++.++.+|+|.-++
T Consensus 291 -------------~---~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 291 -------------V---PSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp -------------S---SSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred -------------C---CCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 0 01567788886555 66667788886554
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.84 E-value=0.028 Score=57.12 Aligned_cols=204 Identities=13% Similarity=0.113 Sum_probs=129.7
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 129 ~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
-..+..|+|.+.++.|.. ++... +.|...++..+.............+..|..+|++..+|.+..+-+..+
T Consensus 111 ~~~~~~l~~d~~~~~lyw--sD~~~-------~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYW--SDLSQ-------RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG 181 (400)
T ss_dssp CSCEEEEEEETTTTEEEE--EETTT-------TEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred cCcceEEeeeeccCceEE--EecCC-------CeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCC
Confidence 345789999997777766 22333 356555653321100011111123467889999844777777777888
Q ss_pred cEEEEeCCCCeEEEEec--CCCEeEEEEeCC---------C-ceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCe
Q 012410 209 IYKVFDLKNYTMLYSIS--DKHVQEIKIRSS---------S-HVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEK 275 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~--~~~V~~Vafs~s---------~-d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~ 275 (464)
.|.+.|+........+. -.....|++.|. . ...|...++. |+..+++- .....-..|++.+. +++
T Consensus 182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~~~~l~~P~glavd~~-~~~ 259 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLL-SGR 259 (400)
T ss_dssp EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEECSSCSCEEEEEEETT-TTE
T ss_pred eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEEECCCCceEEEEEEeC-CCE
Confidence 99999987544332332 245789999773 1 2456666764 55544443 22345588999874 567
Q ss_pred EEEE-eCCCeEEEEECCCCcEEEEccc--CCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccCCC
Q 012410 276 LLVK-QENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL 344 (464)
Q Consensus 276 lla~-s~D~tIkIWDv~tg~~l~~l~g--h~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~ 344 (464)
|..+ ...+.|...|+..+....+..+ ....+.++++ .++.++.+-. .+.|...|. +|+.+.++.....
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~ 332 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 332 (400)
T ss_dssp EEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCS
T ss_pred EEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCC
Confidence 7666 4778999999865544443332 3457888887 5677888887 889999995 8998888875543
No 286
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.69 E-value=0.009 Score=59.64 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=77.2
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE--EEEec-----CCCEeEEEEeCC----C-------------ce
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKHVQEIKIRSS----S-------------HV 240 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~--l~tl~-----~~~V~~Vafs~s----~-------------d~ 240 (464)
+.+|..++|+ |||+++++- .++.|++++ +|+. +..+. ......|+|+|+ . ..
T Consensus 30 l~~P~~ia~~-pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFL-PDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEEC-TTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEc-CCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 4578899997 899988764 568899998 5653 22232 246789999885 1 03
Q ss_pred eEEEEEcCCCc-----EE-EEEe---eCCcceeeEEEEccCCCeEEEEeCC--------------CeEEEEECCCCc---
Q 012410 241 PLKILSIEDGT-----VL-KVFY---HLLHRNKKVDFIEQFNEKLLVKQEN--------------ENLQILDVRNAE--- 294 (464)
Q Consensus 241 tIklWdi~tG~-----~l-~tl~---~~~~~~~~V~F~~~~~~~lla~s~D--------------~tIkIWDv~tg~--- 294 (464)
.|..++...++ .+ ..+. ...|.-..++|.|+ +.|.++..| +.|.-+|.. |.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~d-G~~p~ 182 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVTTGEVYERELAQDLASLGGKILRLTPE-GEPAP 182 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEECCCTTCGGGGGCTTCSSSEEEEECTT-SSBCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEEECCCCCCccccCCCCCceEEEEEcCC-CCCCC
Confidence 45566665442 11 2232 12244578999884 566665321 344444543 21
Q ss_pred ----------EEE-EcccCCCceEEEEEcC-CCcEEEEEe
Q 012410 295 ----------LME-VSRTEFMTPSAFIFLY-ENQLFLTFR 322 (464)
Q Consensus 295 ----------~l~-~l~gh~~~v~sv~Fsp-dgqllaS~s 322 (464)
..+ ...|| ..+..++|.| +|+++++-.
T Consensus 183 ~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred CCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence 011 11233 3477899999 889888865
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.60 E-value=0.015 Score=59.40 Aligned_cols=181 Identities=14% Similarity=0.219 Sum_probs=119.4
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC----------------CC--ceeEEEEEc--CCCcEEEEEee-
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS----------------SS--HVPLKILSI--EDGTVLKVFYH- 258 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~----------------s~--d~tIklWdi--~tG~~l~tl~~- 258 (464)
+|++ .-++-+.|+|+ +|+.+..+....+..|...| .. +.+|.++++ ++++ |+.+..
T Consensus 43 ii~t-~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~ 119 (355)
T 3amr_A 43 LITT-NKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDP 119 (355)
T ss_dssp EEEE-ETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCT
T ss_pred EEEE-cCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecccc
Confidence 4444 34567899999 89999888765555544433 24 689999977 5665 555522
Q ss_pred -----C-CcceeeEEE--EccCCC-eEEEEeCCCeEEEEEC-------CCCcEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 259 -----L-LHRNKKVDF--IEQFNE-KLLVKQENENLQILDV-------RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 259 -----~-~~~~~~V~F--~~~~~~-~lla~s~D~tIkIWDv-------~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
. ......+++ ++..+. ++++...++.+..|++ .++++++++.-. ..+..++..++...|.-+-
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~e 198 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAE 198 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEec
Confidence 1 134466777 554343 3555778899999998 344667776644 3688888888777776776
Q ss_pred -CCeEEEEeCC------CceEEEec-cCCCCcCCCCeeEEEE--CCCCC-EEEEEecCCCccccccCCCCeEEEEeCC-C
Q 012410 323 -NRTVAVWNFR------GELVTSFE-DHLLWHPDCNTNNIYI--TSDQD-LIISYCKAEPEDQWMEGSAGSINVSSIL-T 390 (464)
Q Consensus 323 -D~TIklWd~~------Ge~l~tl~-gH~~~~~~~~v~svaf--SpDg~-~LaSgs~~~~~~~~~~s~DgtIklWdi~-t 390 (464)
|.-|-..|.+ ++++..+. +|... .+..+++ .+||+ +|+..|. .+.+.-++|.+ +
T Consensus 199 Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~a----DvEGLai~~~~~g~gyLivSsQ----------G~~s~~Vydr~~~ 264 (355)
T 3amr_A 199 EDEAIWKFSAEPDGGSNGTVIDRADGRHLTR----DIEGLTIYYAADGKGYLMASSQ----------GNSSYAIYDRQGK 264 (355)
T ss_dssp TTTEEEEEECSTTSCSCCEEEEEBSSSSBCS----CEEEEEEEECGGGCEEEEEEEG----------GGTEEEEEESSTT
T ss_pred ccceEEEEeCCcCCCCCceEEEEecCCcccc----CcceEEEEecCCCCEEEEEEcC----------CCCEEEEEECCCC
Confidence 7554444433 45666653 44332 1677877 78877 6666664 27899999996 7
Q ss_pred CeEEEEEc
Q 012410 391 GKCLAKIN 398 (464)
Q Consensus 391 G~cl~tl~ 398 (464)
.+-+..|.
T Consensus 265 ~~~vg~f~ 272 (355)
T 3amr_A 265 NKYVADFR 272 (355)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEEE
Confidence 88888885
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.55 E-value=0.078 Score=52.22 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=126.9
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcE
Q 012410 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (464)
Q Consensus 131 ~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ti 210 (464)
....|.|.+.++.|.. ++... +.|...++..+... ..+.. .-+..|..++++..+|.+..+-+..+.|
T Consensus 36 ~~~~ld~d~~~~~lyw--~D~~~-------~~I~r~~~~g~~~~--~~~~~-~~l~~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYW--SDVSE-------EAIKRTEFNKTESV--QNVVV-SGLLSPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEGGGTEEEE--EETTT-------TEEEEEETTSSSCC--CEEEE-ECCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEEEeCCCEEEE--EECCC-------CcEEEEEccCCCce--EEEEc-CCCCCccEEEEEcCCCeEEEEECCCCEE
Confidence 4678899987666666 22332 45666665444211 11222 2345688999984477777777778899
Q ss_pred EEEeCCCCeEEEEec---CCCEeEEEEeCC----------CceeEEEEEcCCCcEEEEEe-eCCcceeeEEEEccCCCeE
Q 012410 211 KVFDLKNYTMLYSIS---DKHVQEIKIRSS----------SHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 211 KlWdl~tg~~l~tl~---~~~V~~Vafs~s----------~d~tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~~~~l 276 (464)
.+.++.. ....++. -..-..|++.|. ....|...+.. |+...++- .....-..++|.+. +++|
T Consensus 104 ~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~-~~~l 180 (318)
T 3sov_A 104 EVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYE-EQKL 180 (318)
T ss_dssp EEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETT-TTEE
T ss_pred EEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEecc-CCEE
Confidence 9999864 3333332 245788888762 12456666654 55444442 22344478999884 5677
Q ss_pred EEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEeccC
Q 012410 277 LVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDH 342 (464)
Q Consensus 277 la~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~gH 342 (464)
..+ +..+.|...|+..+.......+....|.++++. ++.++.+-. .+.|...|. +|+.++++...
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 181 YWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHSD 248 (318)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECC
T ss_pred EEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeCC
Confidence 666 478899999976544444444456778999885 567777776 899999998 79887777654
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.52 E-value=0.098 Score=58.45 Aligned_cols=218 Identities=10% Similarity=0.028 Sum_probs=122.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCc-ccceeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 130 ~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~-~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
..+..|+|.+.+..|.. ++... +.|...++........ ..+.. ..+..|..||++..++++..+-+..+
T Consensus 424 ~~~~gl~~d~~~~~lY~--sD~~~-------~~I~~~~l~g~~~~~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~ 493 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYW--SDLSQ-------RMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLG 493 (791)
T ss_dssp SSEEEEEEETTTTEEEE--EETTT-------TEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CceEEEeecccCCeeEE--eeccc-------eeEEEEeccCCCCCcceeEEEe-cCCCCcceeeeeecCCcEEEEecCCC
Confidence 44788999987666666 22333 3565556543211111 11222 24567889999844456666667777
Q ss_pred cEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe--CCCeEE
Q 012410 209 IYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQ 286 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s--~D~tIk 286 (464)
.|.+.++. |....++- ...+..-..|++.|. ++.|..+. ....|.
T Consensus 494 ~I~v~~ld-G~~~~~l~-------------------------------~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~ 540 (791)
T 3m0c_C 494 TVSVADTK-GVKRKTLF-------------------------------RENGSKPRAIVVDPV-HGFMYWTDWGTPAKIK 540 (791)
T ss_dssp EEEEEETT-SSSEEEEE-------------------------------ECTTCCEEEEEEETT-TTEEEEEECSSSCEEE
T ss_pred eEEEEeCC-CCeEEEEE-------------------------------eCCCCCcceEEEecC-CCCEEEecCCCCCeEE
Confidence 88888764 33222221 001122345555552 34555443 235677
Q ss_pred EEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEEEEeCCCceEEEec-cCCCCcCCCCeeEEEECCCCCEE
Q 012410 287 ILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLI 363 (464)
Q Consensus 287 IWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIklWd~~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~L 363 (464)
..++..........+...+|..+++.|. ++++.+-. ...|..-|++|.-.+++- ++..+.. -.+|++ +++.|
T Consensus 541 ~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~---P~glav--~~~~l 615 (791)
T 3m0c_C 541 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH---PFSLAV--FEDKV 615 (791)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS---EEEEEE--ETTEE
T ss_pred EEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCC---CCEEEE--eCCEE
Confidence 7776544444444445578999999965 55666655 789999999877655553 3222211 245665 44444
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCCCCC
Q 012410 364 ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 405 (464)
Q Consensus 364 aSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~ 405 (464)
.-... ..++|..-|..+|+-+.++......|.
T Consensus 616 YwtD~----------~~~~I~~~dk~tG~~~~~l~~~l~~P~ 647 (791)
T 3m0c_C 616 FWTDI----------INEAIFSANRLTGSDVNLLAENLLSPE 647 (791)
T ss_dssp EEEET----------TTTEEEEEETTTCCCCEEEECSCSCCC
T ss_pred EEEEC----------CCCEEEEEeCCCCcceEEeecCCCCce
Confidence 43321 268898889889988888865443344
No 290
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.48 E-value=0.071 Score=53.30 Aligned_cols=131 Identities=10% Similarity=0.085 Sum_probs=77.1
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCe-EEEEec-----CCCEeEEEEeCC--Cc-----------------
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS-----DKHVQEIKIRSS--SH----------------- 239 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~-~l~tl~-----~~~V~~Vafs~s--~d----------------- 239 (464)
+.+|..++|+ |||+++++- .++.|+++| .+|+ .+..+. ......|+|+|+ .+
T Consensus 28 l~~P~~ia~~-pdG~l~V~e-~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPL-GGGRYLVTE-RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEE-ETTEEEEEE-TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEc-CCCeEEEEe-CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4678899997 899987764 458898887 5676 233322 246889999885 11
Q ss_pred eeEEEEEcCCC-------cEE-EEEe-eCCcceeeEEEEccCCCeEEEEeCC--------------CeEEEEECCCCc--
Q 012410 240 VPLKILSIEDG-------TVL-KVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--------------ENLQILDVRNAE-- 294 (464)
Q Consensus 240 ~tIklWdi~tG-------~~l-~tl~-~~~~~~~~V~F~~~~~~~lla~s~D--------------~tIkIWDv~tg~-- 294 (464)
..|-.++...+ +.+ ..+. ...|.-..++|.|+ ++|.++..| +.|.-.|.. |+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD--G~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p 181 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD--GMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPP 181 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT--SCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC--CcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCC
Confidence 33445555433 111 2233 22344578999884 566665322 344444433 22
Q ss_pred -------EEEEcccCCCceEEEEEcC-CCcEEEEEe
Q 012410 295 -------LMEVSRTEFMTPSAFIFLY-ENQLFLTFR 322 (464)
Q Consensus 295 -------~l~~l~gh~~~v~sv~Fsp-dgqllaS~s 322 (464)
......|| -.+..++|.| +|+++++-.
T Consensus 182 ~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEec
Confidence 01112233 3477899999 899888865
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.39 E-value=0.099 Score=56.65 Aligned_cols=174 Identities=11% Similarity=0.080 Sum_probs=114.8
Q ss_pred EEEEecCCCcEEEEeCCCCeEEEEec---CCCEeEEEEeCC---------CceeEEEEEcCCCcEEEEEeeCCcceeeEE
Q 012410 200 VLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIRSS---------SHVPLKILSIEDGTVLKVFYHLLHRNKKVD 267 (464)
Q Consensus 200 ~LaSgs~D~tiKlWdl~tg~~l~tl~---~~~V~~Vafs~s---------~d~tIklWdi~tG~~l~tl~~~~~~~~~V~ 267 (464)
+|..+ ....|+.-|+.+......+. -..+..|+|.+. ..+.|..+++..+.....+.........+|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44443 45678888998765444443 246789999873 335666666653333333332224457788
Q ss_pred EEccCCCeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcC-CCcEEEEEe--CCeEEEEeCCCceEEEeccCC
Q 012410 268 FIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR--NRTVAVWNFRGELVTSFEDHL 343 (464)
Q Consensus 268 F~~~~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fsp-dgqllaS~s--D~TIklWd~~Ge~l~tl~gH~ 343 (464)
+.+. ++.|..+ ...+.|.+-|+..+............|.++++.| +|.++.|-. ...|...+.+|.-...+-...
T Consensus 87 vD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~ 165 (628)
T 4a0p_A 87 VDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV 165 (628)
T ss_dssp EETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC
T ss_pred EEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC
Confidence 8663 5666665 4778999999765543333345567899999998 688888763 567888888887766665554
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 390 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~t 390 (464)
.| -+.|++.++++.|.-+-. ..+.|...|+..
T Consensus 166 ~~-----P~GlalD~~~~~LY~aD~----------~~~~I~~~d~dG 197 (628)
T 4a0p_A 166 GR-----ANGLTIDYAKRRLYWTDL----------DTNLIESSNMLG 197 (628)
T ss_dssp SS-----EEEEEEETTTTEEEEEET----------TTTEEEEEETTS
T ss_pred CC-----cceEEEccccCEEEEEEC----------CCCEEEEEcCCC
Confidence 45 579999998887765532 367888888743
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.33 E-value=0.0023 Score=70.27 Aligned_cols=204 Identities=10% Similarity=0.092 Sum_probs=123.8
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCC----CeEEEEecC--CCEeEEEEeC---------CCceeEEEEEcCC
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KHVQEIKIRS---------SSHVPLKILSIED 249 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~t----g~~l~tl~~--~~V~~Vafs~---------s~d~tIklWdi~t 249 (464)
+..|..|+|++.++.+..+-...+.|+.+++.+ ......+.. .....||+.+ .....|.+.++.
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d- 483 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK- 483 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS-
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC-
Confidence 355668999833555555556678899999875 121112211 2345677653 244678888886
Q ss_pred CcEEEEEe-eCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CC
Q 012410 250 GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NR 324 (464)
Q Consensus 250 G~~l~tl~-~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~ 324 (464)
|..++++- .....-..|++.|. ++.|..+. ..+.|...++...............+..++|+|+ ++++++-+ .+
T Consensus 484 g~~~~~l~~~~~~~P~giavDp~-~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~ 562 (699)
T 1n7d_A 484 GVKRKTLFREQGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 562 (699)
T ss_dssp SCCEEEECCCSSCCCCCEECCSS-SSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTT
T ss_pred CCceEEEEeCCCCCcceEEEccC-CCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCC
Confidence 44444443 22344578888774 46666653 2378888876443322233344567899999986 56666666 88
Q ss_pred eEEEEeCCCceEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 325 TVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 325 TIklWd~~Ge~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
+|...|++|.-.+++... ...+| ..|++..+ .++++... .+.|...|..+|+-+++|.....
T Consensus 563 ~I~~~d~dG~~~~~~~~~~~~~~~P----~glavd~~-~lywtd~~-----------~~~V~~~d~~~G~~~~~i~~~~~ 626 (699)
T 1n7d_A 563 SISSIDVNGGNRKTILEDEKRLAHP----FSLAVFED-KVFWTDII-----------NEAIFSANRLTGSDVNLLAENLL 626 (699)
T ss_dssp EEEEECSSSSCCEEECCCSSSCSSC----CCCEEETT-EEEEECST-----------TTCEEEEETTTEEEEECCCTTCS
T ss_pred eEEEEccCCCceEEEEecCCcCCCc----eEeEEECC-EEEEEeCC-----------CCeEEEEEccCCCceEEeecCCC
Confidence 999999987655555421 11222 35666444 34444332 68999999999999988865333
Q ss_pred CCCc
Q 012410 403 SPKV 406 (464)
Q Consensus 403 ~~~~ 406 (464)
.|.+
T Consensus 627 ~P~~ 630 (699)
T 1n7d_A 627 SPED 630 (699)
T ss_dssp SCCC
T ss_pred CCcE
Confidence 3443
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.30 E-value=0.17 Score=56.49 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=113.0
Q ss_pred CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCCC----cEEEEEeeCCcceeeEEEEcc
Q 012410 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIEDG----TVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~tG----~~l~tl~~~~~~~~~V~F~~~ 271 (464)
....|+.-++...+....+. ...+..|+|.+. ....|..+++... .....+...+.....||+.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 34568888887655444343 456788888762 2345666666531 122223223345578888764
Q ss_pred CCCeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-C-CeEEEEeCCCceEEEeccCC-CCc
Q 012410 272 FNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFEDHL-LWH 346 (464)
Q Consensus 272 ~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D-~TIklWd~~Ge~l~tl~gH~-~~~ 346 (464)
++.|..+ ...+.|.+.|+........+......|.+|++.|. |.++.|-. + ..|..-+++|...+++-... .|
T Consensus 482 -~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~- 559 (791)
T 3m0c_C 482 -HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW- 559 (791)
T ss_dssp -TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC-
T ss_pred -CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC-
Confidence 4566665 57899999997755544444455678999999986 77777765 4 78999999888777665433 34
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 347 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 347 ~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
-+.|++.|++..|.-+-. ...+|...|+ .|.-.+++
T Consensus 560 ----P~GLavD~~~~~LYwaD~----------~~~~I~~~d~-dG~~~~~v 595 (791)
T 3m0c_C 560 ----PNGITLDLLSGRLYWVDS----------KLHSISSIDV-NGGNRKTI 595 (791)
T ss_dssp ----EEEEEEETTTTEEEEEET----------TTTEEEEEET-TSCSCEEE
T ss_pred ----ceEEEEecCCCeEEEEeC----------CCCcEEEEec-CCCceEEE
Confidence 579999987777665432 2578999997 45444444
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.29 E-value=0.11 Score=56.27 Aligned_cols=196 Identities=10% Similarity=0.071 Sum_probs=128.2
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC--CCEeEEEEeC---------CCceeEEEEEcCCCcEEE
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIRS---------SSHVPLKILSIEDGTVLK 254 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~--~~V~~Vafs~---------s~d~tIklWdi~tG~~l~ 254 (464)
+.|-.|+|+..+|.+..+...++.|..+++........+.. .....||+.+ .....|.+.++. |...+
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEE
Confidence 45668999855677777777889999999875443333332 3567888854 234577777775 44444
Q ss_pred EEe-eCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEEEE
Q 012410 255 VFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVW 329 (464)
Q Consensus 255 tl~-~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIklW 329 (464)
++- ..+..-+.|++.|. ++.|..+. ....|...++.... ++++.....+|..+++.++ ++++.+-. .+.|...
T Consensus 116 ~l~~~~l~~P~~iavdp~-~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~ 193 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPA-EGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESS 193 (628)
T ss_dssp EEECSSCCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEeCCCCCcccEEEccC-CCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEE
Confidence 443 33344588999874 56777764 35678778865544 3333345678999999996 45555555 8899999
Q ss_pred eCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCC
Q 012410 330 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 401 (464)
Q Consensus 330 d~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~ 401 (464)
|++|.-.+.+.+... + -..+++.. +.+.++-. ..++|..-|..+|+-...+....
T Consensus 194 d~dG~~~~v~~~~l~-~----P~glav~~-~~ly~tD~-----------~~~~I~~~dk~tg~~~~~l~~~~ 248 (628)
T 4a0p_A 194 NMLGLNREVIADDLP-H----PFGLTQYQ-DYIYWTDW-----------SRRSIERANKTSGQNRTIIQGHL 248 (628)
T ss_dssp ETTSCSCEEEEECCS-C----EEEEEEET-TEEEEEET-----------TTTEEEEEETTTCCSCEEEECSC
T ss_pred cCCCCceEEeeccCC-C----ceEEEEEC-CEEEEecC-----------CCCEEEEEECCCCCceEEEecCC
Confidence 997654455555433 3 34777754 34444432 26889999988898777776543
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.26 E-value=0.00091 Score=73.41 Aligned_cols=176 Identities=10% Similarity=0.026 Sum_probs=105.7
Q ss_pred CCCcEEEEeCCCCeEEEEec-CCCEeEEEEeCC---------CceeEEEEEcCC----CcEEEEEeeCCcceeeEEEEcc
Q 012410 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIRSS---------SHVPLKILSIED----GTVLKVFYHLLHRNKKVDFIEQ 271 (464)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~Vafs~s---------~d~tIklWdi~t----G~~l~tl~~~~~~~~~V~F~~~ 271 (464)
....|++-++.+++....+. ...+..|+|.+. ....|..+++.+ ......+.........|++.+.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 34578888888766544443 345667787653 234566666653 1111111111123356776543
Q ss_pred CCCeEEEE-eCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-C-CeEEEEeCCCceEEEeccCCCCcC
Q 012410 272 FNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFEDHLLWHP 347 (464)
Q Consensus 272 ~~~~lla~-s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D-~TIklWd~~Ge~l~tl~gH~~~~~ 347 (464)
++.|..+ ...+.|.+.|+.......++......|..+++.|+ |.++.+-. . ++|...+++|...+++.......
T Consensus 464 -~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~- 541 (699)
T 1n7d_A 464 -HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW- 541 (699)
T ss_dssp -SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS-
T ss_pred -CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC-
Confidence 4566654 47789999997765555455545567899999985 56666654 3 78888888887666654332222
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 348 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 348 ~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
-+.|+|+|++..|.-+.. ..++|...|+. |.-.+++
T Consensus 542 ---PnGlavd~~~~~LY~aD~----------~~~~I~~~d~d-G~~~~~~ 577 (699)
T 1n7d_A 542 ---PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 577 (699)
T ss_dssp ---CCCEEECTTTCCEEEEET----------TTTEEEEECSS-SSCCEEE
T ss_pred ---ccEEEEeccCCEEEEEec----------CCCeEEEEccC-CCceEEE
Confidence 468999998666554322 26789999974 4434444
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.26 E-value=0.31 Score=52.64 Aligned_cols=269 Identities=11% Similarity=0.076 Sum_probs=145.8
Q ss_pred cceeehhccCCeEEeeecccccEeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEe-ccCCCCCc
Q 012410 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSG 176 (464)
Q Consensus 98 g~~l~~l~~~g~~~~~~~~~g~~l~~ln~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i-~~G~~~~~ 176 (464)
+++..+-...+.|...+ .+|.....+-...-..-+.|++.|.+..|.. ++.... . +|+-. ..|....
T Consensus 96 ~~ly~~d~~~~~I~v~~-~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~--tD~g~~------~--~I~r~~~dG~~~~- 163 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSN-LDGSLRKVLFWQELDQPRAIALDPSSGFMYW--TDWGEV------P--KIERAGMDGSSRF- 163 (619)
T ss_dssp TEEEEEETTTTEEEEEE-TTSCSCEEEECSSCSCCCCEEEETTTTEEEE--EECSSS------C--EEEEEETTSCSCE-
T ss_pred CEEEEEeCCCCEEEEEE-CCCCCEEEEEeCCCCCCceEEEecCCCeEEE--eccCCC------C--EEEEEECCCCceE-
Confidence 66777777778898888 6676555553233344678999997655554 121111 1 23322 2333211
Q ss_pred ccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC---CCEeEEEEeC-------CCceeEEEEE
Q 012410 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIRS-------SSHVPLKILS 246 (464)
Q Consensus 177 ~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~---~~V~~Vafs~-------s~d~tIklWd 246 (464)
.+.. ..+.+|..+++++.++++..+-+....|...|+.. .-..++.. ..-..|++.. .....|...|
T Consensus 164 -~l~~-~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 164 -IIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACN 240 (619)
T ss_dssp -EEEC-SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC-CEEC---------CCCEEESSSEEEEECTTTCSEEEEE
T ss_pred -EEEe-CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC-CccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEE
Confidence 1222 24678999999844566666666677888888854 33322211 1223444432 2445677777
Q ss_pred cCCCcEEEEEeeCCcceeeE-------------------------EEEcc-----------------C-------CC-eE
Q 012410 247 IEDGTVLKVFYHLLHRNKKV-------------------------DFIEQ-----------------F-------NE-KL 276 (464)
Q Consensus 247 i~tG~~l~tl~~~~~~~~~V-------------------------~F~~~-----------------~-------~~-~l 276 (464)
..+|+.+..+......-..| ++..+ + .+ .|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 77776554443111111111 11100 0 01 23
Q ss_pred EEEeCCCeEEEEECCCCcE--EEEcccCCCceEEEEEcC-CCcEEEEEe-CCeEEEEeCCCceEEEeccCCCCcCCCCee
Q 012410 277 LVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~--l~~l~gh~~~v~sv~Fsp-dgqllaS~s-D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
+.+. .+.|+..++.+++. +.........+.+++|.+ ++.++.+-. .+.|.-++.+|.-..++-...... ..
T Consensus 321 l~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~----p~ 395 (619)
T 3s94_A 321 LLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAH----PD 395 (619)
T ss_dssp EEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC----CC
T ss_pred EEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCC----cC
Confidence 3332 34666667766542 111112235688999997 677777776 899999999765444443222111 46
Q ss_pred EEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 353 NIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 353 svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
.+|+.+.+..|.-... ..++|.+-++ .|+-.++|
T Consensus 396 GlAvD~~~~~lY~tD~----------~~~~I~v~~~-~G~~~~~l 429 (619)
T 3s94_A 396 GIAVDWVARNLYWTDT----------GTDRIEVTRL-NGTMRKIL 429 (619)
T ss_dssp EEEEETTTTEEEEEET----------TTTEEEEEET-TSCSCEEE
T ss_pred ceEEecccCcEEEEeC----------CCCcEEEEeC-CCCeEEEE
Confidence 8999875554443321 3688998886 45444444
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.24 E-value=0.028 Score=57.31 Aligned_cols=173 Identities=15% Similarity=0.235 Sum_probs=108.9
Q ss_pred CceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccC--CC-e--EEEEe--C--CCeEEEEEC--CCCcEEEEcc------
Q 012410 238 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF--NE-K--LLVKQ--E--NENLQILDV--RNAELMEVSR------ 300 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~--~~-~--lla~s--~--D~tIkIWDv--~tg~~l~~l~------ 300 (464)
...-+.++|+ +|+.++.+.. .+..-|+..|.+ ++ + +++.+ . +++|.++++ .++++...-.
T Consensus 48 k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~ 124 (355)
T 3amr_A 48 KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIA 124 (355)
T ss_dssp TTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEE
T ss_pred CCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcC
Confidence 3457899999 7999999874 456677766632 12 2 44444 4 689999955 6676444311
Q ss_pred cCCCceEEEEE--cCC-Cc--EEEEEeCCeEEEEeC--------CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 301 TEFMTPSAFIF--LYE-NQ--LFLTFRNRTVAVWNF--------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 301 gh~~~v~sv~F--spd-gq--llaS~sD~TIklWd~--------~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
.....+..+++ +|. |+ .+++..++.+..|++ +++++++|.--.. +..++..|....|.-+-
T Consensus 125 t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq------~EgcvvDd~~g~Lyv~e 198 (355)
T 3amr_A 125 TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ------TEGMAADDEYGRLYIAE 198 (355)
T ss_dssp CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC------EEEEEEETTTTEEEEEE
T ss_pred CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC------cceEEEcCCCCeEEEec
Confidence 22257888888 774 54 333333999999987 2367888875432 67888888888887764
Q ss_pred cCCCccccccCCCCeEEEEeCC-----CCeEEEEEc-cCCCCCCcccccCCCCCCccccccccccccccccccccCEEEE
Q 012410 368 KAEPEDQWMEGSAGSINVSSIL-----TGKCLAKIN-ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSL 441 (464)
Q Consensus 368 ~~~~~~~~~~s~DgtIklWdi~-----tG~cl~tl~-gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 441 (464)
+ |.-|.-.|.. +++.+..+. +|- -+.+..|
T Consensus 199 E-----------d~GIw~~da~p~~~~~~~~v~~~~~g~l---------------------------------~aDvEGL 234 (355)
T 3amr_A 199 E-----------DEAIWKFSAEPDGGSNGTVIDRADGRHL---------------------------------TRDIEGL 234 (355)
T ss_dssp T-----------TTEEEEEECSTTSCSCCEEEEEBSSSSB---------------------------------CSCEEEE
T ss_pred c-----------cceEEEEeCCcCCCCCceEEEEecCCcc---------------------------------ccCcceE
Confidence 3 5334333432 455665542 111 0167777
Q ss_pred EE--cCCCC-EEEEee-CCCcEEecc
Q 012410 442 FY--DEERN-EIYTGN-RHGLVHVWS 463 (464)
Q Consensus 442 af--spDg~-~LaSgs-~DgtVrlWd 463 (464)
++ .+||+ +|+..| .+.+..|+|
T Consensus 235 ai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 235 TIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred EEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 77 67777 455444 677888876
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.12 E-value=0.12 Score=55.94 Aligned_cols=198 Identities=15% Similarity=0.172 Sum_probs=123.5
Q ss_pred ccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE-EEEecC--CCEeEEEEeC---------CCceeEEEEEcCCCcE
Q 012410 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISD--KHVQEIKIRS---------SSHVPLKILSIEDGTV 252 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~-l~tl~~--~~V~~Vafs~---------s~d~tIklWdi~tG~~ 252 (464)
++.|..|+|+..+|.+..+-...+.|..+++..... ...+.. .....||+.+ .....|.+-+.. |+.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~ 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSL 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCC
Confidence 456779999855676666766778899999875532 223332 5688899965 244678888886 555
Q ss_pred EEEEe-eCCcceeeEEEEccCCCeEEEEe--CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC-CcEEEEEe-CCeEE
Q 012410 253 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVA 327 (464)
Q Consensus 253 l~tl~-~~~~~~~~V~F~~~~~~~lla~s--~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd-gqllaS~s-D~TIk 327 (464)
.+++- ..+..-+.|++.|. ++.|..+. ....|..-++..............+|..+++.|+ ++++.+-. .++|.
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~ 196 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196 (619)
T ss_dssp CEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence 55554 33455589999884 56777765 3456666675543333333345678999999985 55666655 88999
Q ss_pred EEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 328 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 328 lWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
.-|++|.-.+++..-...+| ..|++..| .+..+-. ..++|..-|..+|+-+..+...
T Consensus 197 ~~~~dG~~~~~~~~~~~~~P----~gi~~~~~-~ly~td~-----------~~~~V~~~d~~tg~~~~~i~~~ 253 (619)
T 3s94_A 197 KSNLDGTNRQAVVKGSLPHP----FALTLFED-ILYWTDW-----------STHSILACNKYTGEGLREIHSD 253 (619)
T ss_dssp EESSSCCEEC---------C----CCEEESSS-EEEEECT-----------TTCSEEEEESSSCCCCEECCSC
T ss_pred EecCCCCccEEEEeCCCCCc----eEEEEeCC-EEEEecC-----------CCCEEEEEECCCCcccEEEecC
Confidence 99998766555433222333 36777666 4444322 2688999998898877666543
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.96 E-value=0.054 Score=54.17 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=66.8
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc-EEEEc---ccCCCceEEEEEcCC----CcEEEEEe----C----C
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVS---RTEFMTPSAFIFLYE----NQLFLTFR----N----R 324 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~-~l~~l---~gh~~~v~sv~Fspd----gqllaS~s----D----~ 324 (464)
..-+.++|.|+ +.|+++..++.|+++| .+|+ .+..+ ......+..++|+|| |.++++-+ + .
T Consensus 29 ~~P~~ia~~pd--G~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGG--GRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEET--TEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCC--CeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 44589999995 7899998889999998 5676 22221 122356899999997 78877754 2 5
Q ss_pred eEEEEeCCCc---------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 325 TVAVWNFRGE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 325 TIklWd~~Ge---------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
.|..++.++. ++..+.... .|. -+.++|.|||.+.++-+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~-~h~---~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAY-IHN---GGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCS-SCC---CCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCC-CcC---CceEEECCCCcEEEEEC
Confidence 6777776543 223343211 111 35799999999998854
No 300
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.94 E-value=0.32 Score=47.06 Aligned_cols=182 Identities=8% Similarity=0.237 Sum_probs=108.1
Q ss_pred CceeEEEEEcCCCcEEEEEee-CCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCCCcE---EEEcc------cCCCce
Q 012410 238 SHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL---MEVSR------TEFMTP 306 (464)
Q Consensus 238 ~d~tIklWdi~tG~~l~tl~~-~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~---l~~l~------gh~~~v 306 (464)
.+..|-..|.+ |++++++.- .....-.|++.+ ++.+++++ .++.+-+.++..... +.... ......
T Consensus 47 ~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~--~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~ 123 (255)
T 3qqz_A 47 KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG--DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGF 123 (255)
T ss_dssp TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS--TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCC
T ss_pred CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC--CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCc
Confidence 45567777887 999988752 113446788765 35665654 667888888765431 22221 123345
Q ss_pred EEEEEcCCCcEEEEEe-CCeEEEEeCCC----ceEEEecc----CCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 012410 307 SAFIFLYENQLFLTFR-NRTVAVWNFRG----ELVTSFED----HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 377 (464)
Q Consensus 307 ~sv~FspdgqllaS~s-D~TIklWd~~G----e~l~tl~g----H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~ 377 (464)
..+++.|+++.|..+. .....||.++| ..++.+.. ......+ +.+++|.|.-..|.--|.
T Consensus 124 EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d--~S~l~~dp~tg~lliLS~--------- 192 (255)
T 3qqz_A 124 EGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD--VSGAEFNQQKNTLLVLSH--------- 192 (255)
T ss_dssp EEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC--CCEEEEETTTTEEEEEET---------
T ss_pred ceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC--ceeEEEcCCCCeEEEEEC---------
Confidence 8999999997776676 44556666543 23333322 1111222 679999997665555554
Q ss_pred CCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCC
Q 012410 378 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 457 (464)
Q Consensus 378 s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~Dg 457 (464)
+.+.+-..|. +|+-+..+.=..+ .+ ...+...+=..|+|+|+|+ ||-.|+-.
T Consensus 193 -~s~~L~~~d~-~g~~~~~~~L~~g-----------~~--------------~l~~~~~qpEGia~d~~G~-lyIvsE~n 244 (255)
T 3qqz_A 193 -ESRALQEVTL-VGEVIGEMSLTKG-----------SR--------------GLSHNIKQAEGVAMDASGN-IYIVSEPN 244 (255)
T ss_dssp -TTTEEEEECT-TCCEEEEEECSTT-----------GG--------------GCSSCCCSEEEEEECTTCC-EEEEETTT
T ss_pred -CCCeEEEEcC-CCCEEEEEEcCCc-----------cC--------------CcccccCCCCeeEECCCCC-EEEEcCCc
Confidence 3688888884 6886655422111 00 0001112567899999997 66668777
Q ss_pred cEEe
Q 012410 458 LVHV 461 (464)
Q Consensus 458 tVrl 461 (464)
.+..
T Consensus 245 ~~y~ 248 (255)
T 3qqz_A 245 RFYR 248 (255)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6544
No 301
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.87 E-value=0.13 Score=49.85 Aligned_cols=107 Identities=7% Similarity=0.145 Sum_probs=75.6
Q ss_pred CcceeeEEEEccCCCeEEE-EeCCCeEEEEECCCCcEEEEcc-cCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-C-Cc
Q 012410 260 LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-R-GE 334 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla-~s~D~tIkIWDv~tg~~l~~l~-gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~-Ge 334 (464)
......++|.|+ +++|.+ ..+++.|-..|.. |+.++.+. +-..-+..|++.++|+++++.- ++.+-+.++ . ++
T Consensus 26 ~~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 355688999885 566766 5689999999987 88887652 3335688999999999888876 888989887 3 54
Q ss_pred --eEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 335 --LVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 335 --~l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
.+.... +......+.....+|+.|+++.|..+++
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E 140 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE 140 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC
Confidence 223332 1111112334689999999988888775
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.78 E-value=0.05 Score=54.20 Aligned_cols=100 Identities=8% Similarity=0.061 Sum_probs=66.1
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEE--EEc---ccCCCceEEEEEcCC----CcEEEEEe-C-----Ce
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM--EVS---RTEFMTPSAFIFLYE----NQLFLTFR-N-----RT 325 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l--~~l---~gh~~~v~sv~Fspd----gqllaS~s-D-----~T 325 (464)
..-+.++|.|+ +.++++..++.|++++ +|+.. ..+ ......+..++|+|| +.++++-. + ..
T Consensus 31 ~~P~~ia~~pd--G~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPD--GGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTT--SCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCC--CeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 33478999885 6788888889999998 56532 211 122357899999998 77777766 4 67
Q ss_pred EEEEeCC-Cc------eEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 326 VAVWNFR-GE------LVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 326 IklWd~~-Ge------~l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
|..++.+ ++ ++..+..+ ...|. -..++|.|||.+.++-+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~---~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHS---GGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCC---CCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcC---CceEEECCCCCEEEEEC
Confidence 7778775 32 22334410 11111 35799999999888854
No 303
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.78 E-value=0.55 Score=47.42 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=78.7
Q ss_pred cccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeE--EEEec------CCCEeEEEEeCC--Ccee------------
Q 012410 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------DKHVQEIKIRSS--SHVP------------ 241 (464)
Q Consensus 184 ~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~--l~tl~------~~~V~~Vafs~s--~d~t------------ 241 (464)
-+.+|..++|. |||.+|++--..+.|++++..+|+. +..+. ......|+|+|+ .++.
T Consensus 30 gL~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 35678899997 8999998776688999998777764 23332 346789999885 2222
Q ss_pred EEEEEcCCC----------cEE-EEEe-eCCcceeeEEEEccCCCeEEEE-eCC-------------CeEEEEECCCC--
Q 012410 242 LKILSIEDG----------TVL-KVFY-HLLHRNKKVDFIEQFNEKLLVK-QEN-------------ENLQILDVRNA-- 293 (464)
Q Consensus 242 IklWdi~tG----------~~l-~tl~-~~~~~~~~V~F~~~~~~~lla~-s~D-------------~tIkIWDv~tg-- 293 (464)
|--+....+ +.+ ..+. ...|.-..++|.|+ ++|.++ ++. +.|-=.|....
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpD--G~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPD--KMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTT--SCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCC--CCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 333333321 122 2232 22355578999884 566664 211 22222233211
Q ss_pred ------cEEEEcccCCCceEEEEEcCCCcEEEEEe
Q 012410 294 ------ELMEVSRTEFMTPSAFIFLYENQLFLTFR 322 (464)
Q Consensus 294 ------~~l~~l~gh~~~v~sv~FspdgqllaS~s 322 (464)
.......||- -+..++|.|+|+++++=-
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEEC
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEec
Confidence 0011122443 467899999999988754
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.75 E-value=0.25 Score=50.07 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCCeEEEEECCCC--c--EEEEcccC-CCceEEEEEcCCCcEEEEEe----C------------CeEEEEeCC-CceEEE
Q 012410 281 ENENLQILDVRNA--E--LMEVSRTE-FMTPSAFIFLYENQLFLTFR----N------------RTVAVWNFR-GELVTS 338 (464)
Q Consensus 281 ~D~tIkIWDv~tg--~--~l~~l~gh-~~~v~sv~FspdgqllaS~s----D------------~TIklWd~~-Ge~l~t 338 (464)
.+.+|.||++..+ . .+....+. ...+..+++.++|.+.++.. | .+=+||-++ |++..-
T Consensus 137 ~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~ 216 (355)
T 3sre_A 137 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV 216 (355)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEE
T ss_pred CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEe
Confidence 4678888776553 2 23344443 46789999999999988854 2 234666663 554433
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 012410 339 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 389 (464)
Q Consensus 339 l~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~ 389 (464)
+.+ ... -|.|+|||||++|.-+.. ..++|..+++.
T Consensus 217 ~~~-l~~-----pNGia~spDg~~lYvadt----------~~~~I~~~~~~ 251 (355)
T 3sre_A 217 AEG-FDF-----ANGINISPDGKYVYIAEL----------LAHKIHVYEKH 251 (355)
T ss_dssp EEE-ESS-----EEEEEECTTSSEEEEEEG----------GGTEEEEEEEC
T ss_pred ecC-Ccc-----cCcceECCCCCEEEEEeC----------CCCeEEEEEEC
Confidence 333 222 489999999998876542 26889999985
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.61 E-value=0.33 Score=49.08 Aligned_cols=163 Identities=10% Similarity=0.093 Sum_probs=102.6
Q ss_pred cCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecCCCEeEEEEeC-C--CceeEEEEEcCCCcEEEEEeeCCcc
Q 012410 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIRS-S--SHVPLKILSIEDGTVLKVFYHLLHR 262 (464)
Q Consensus 186 ~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~-s--~d~tIklWdi~tG~~l~tl~~~~~~ 262 (464)
.+|.+++|++.+|.++.|.-..++|-.||...+..... . |.. + .+....
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~--------~~~~s~~g~~~~~------------------- 64 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-V--------IDGASSNGDGEQQ------------------- 64 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-C--------CTTTCCSSCCSEE-------------------
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-e--------cCCccccCCCcce-------------------
Confidence 45668999866888888888999999999875543222 1 110 0 000000
Q ss_pred eeeEEE---EccCCCeEEEEe--------------CCCeEEEEECC---CCcEEE--Eccc-----------CCCceEEE
Q 012410 263 NKKVDF---IEQFNEKLLVKQ--------------ENENLQILDVR---NAELME--VSRT-----------EFMTPSAF 309 (464)
Q Consensus 263 ~~~V~F---~~~~~~~lla~s--------------~D~tIkIWDv~---tg~~l~--~l~g-----------h~~~v~sv 309 (464)
...|.+ -|. ++|++.. .+.-|..+|+. +|+.+. .|.+ ....+..+
T Consensus 65 ~sGl~~~~~D~~--grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 65 MSGLSLLTHDNS--KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEESSSSSC--CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred eeEEEEeccCCC--CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence 122223 121 3444421 26778889998 787654 2322 22247789
Q ss_pred EEcCCCcEEEEEe-C-CeEEEEeCCCceEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 012410 310 IFLYENQLFLTFR-N-RTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 386 (464)
Q Consensus 310 ~FspdgqllaS~s-D-~TIklWd~~Ge~l~tl~-gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklW 386 (464)
+.-++|+..++++ - +.|-..+.+|+.+..+. ........+..+.|+++|||++|+... + ++.+--.
T Consensus 143 avD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~----------~-~g~L~~f 211 (334)
T 2p9w_A 143 AQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG----------G-PRALTAF 211 (334)
T ss_dssp EECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES----------S-SSSEEEE
T ss_pred EECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc----------C-CCeEEEE
Confidence 9999999999999 7 87766676788655443 111111223467999999999888763 2 7888888
Q ss_pred eCC
Q 012410 387 SIL 389 (464)
Q Consensus 387 di~ 389 (464)
|+.
T Consensus 212 D~~ 214 (334)
T 2p9w_A 212 DVS 214 (334)
T ss_dssp ECS
T ss_pred cCC
Confidence 876
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.22 E-value=0.39 Score=48.57 Aligned_cols=158 Identities=11% Similarity=0.132 Sum_probs=100.3
Q ss_pred eeEEEEccCCCeEEEEe-CCCeEEEEECCCCcEEEEcccC-------CCceEEEEE---cCCCcEEEEEe----------
Q 012410 264 KKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTE-------FMTPSAFIF---LYENQLFLTFR---------- 322 (464)
Q Consensus 264 ~~V~F~~~~~~~lla~s-~D~tIkIWDv~tg~~l~~l~gh-------~~~v~sv~F---spdgqllaS~s---------- 322 (464)
.+++|.+. .+.+..++ ..++|-.||...+...++...+ ...+..+.+ -|+|++++...
T Consensus 16 E~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETT-TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCC-CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 56777663 57888888 8999999998877655543222 124678999 48999998532
Q ss_pred ----CCeEEEEeCC----CceEEE--eccCCCC-------cCCCCeeEEEECCCCCEEEEEecCCCccccccCCC-CeEE
Q 012410 323 ----NRTVAVWNFR----GELVTS--FEDHLLW-------HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA-GSIN 384 (464)
Q Consensus 323 ----D~TIklWd~~----Ge~l~t--l~gH~~~-------~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~D-gtIk 384 (464)
++.|..+|+. |+.+.. |.+.... .+ ...+.+++-++|+.-++++. - +.|-
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~-~~~nDvavD~~GnaYVt~s~-----------~~~~I~ 162 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP-FGVVQSAQDRDGNSYVAFAL-----------GMPAIA 162 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC-EEEEEEEECTTSCEEEEEEE-----------SSCEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc-cCCceeEECCCCCEEEeCCC-----------CCCeEE
Confidence 5778899977 777643 3322210 00 01579999999999999886 4 5555
Q ss_pred EEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEecc
Q 012410 385 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 463 (464)
Q Consensus 385 lWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrlWd 463 (464)
..+. .|+-+..+.-.. |. .. ..-....++|+|||++|+.....|.+.-.|
T Consensus 163 rV~p-dG~~~~~~~~~~--~~--~~------------------------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 163 RVSA-DGKTVSTFAWES--GN--GG------------------------QRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EECT-TSCCEEEEEECC--CC--SS------------------------SCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred EEeC-CCCEEeeeeecC--CC--cc------------------------cccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 5552 455444332111 00 00 001456789999999888776677765444
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.15 E-value=1.2 Score=44.17 Aligned_cols=132 Identities=12% Similarity=0.127 Sum_probs=76.4
Q ss_pred ccCceEEEEeCCCCc-EEEEecCCCcEEEEeCCCCeEE---EEec------CCCEeEEEEeCC--Cc-------------
Q 012410 185 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTML---YSIS------DKHVQEIKIRSS--SH------------- 239 (464)
Q Consensus 185 ~~~~~~VaFs~pdGk-~LaSgs~D~tiKlWdl~tg~~l---~tl~------~~~V~~Vafs~s--~d------------- 239 (464)
+.+|..++|+ |||+ ++++- ..+.|++++. +|... ..+. ......|+|+|+ .+
T Consensus 17 l~~P~~i~~~-pdG~~l~V~e-~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 17 LDHPWALAFL-PDNHGMLITL-RGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp ESSEEEEEEC-STTCCEEEEE-TTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCCcEEEEEc-CCCCEEEEEe-CCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 5678899997 8999 77754 5688999884 45432 1111 245789999884 11
Q ss_pred ----eeEEEEEcCCC--c--EEEE-Eee------CCcceeeEEEEccCCCeEEEEeCC--------------CeEEEEEC
Q 012410 240 ----VPLKILSIEDG--T--VLKV-FYH------LLHRNKKVDFIEQFNEKLLVKQEN--------------ENLQILDV 290 (464)
Q Consensus 240 ----~tIklWdi~tG--~--~l~t-l~~------~~~~~~~V~F~~~~~~~lla~s~D--------------~tIkIWDv 290 (464)
..|--++...+ + -.++ +.. ..|.-..++|.|+ +.|.++..| +.|.-.|.
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK--GYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS--SEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC--CcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 23444444332 1 1111 211 1244578999885 577776433 34544564
Q ss_pred CCC------------cEEEEc-ccCCCceEEEEEcC-CCcEEEEEe
Q 012410 291 RNA------------ELMEVS-RTEFMTPSAFIFLY-ENQLFLTFR 322 (464)
Q Consensus 291 ~tg------------~~l~~l-~gh~~~v~sv~Fsp-dgqllaS~s 322 (464)
... ...+++ .|| -.++.++|.| +|+++++-.
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEec
Confidence 422 011111 233 3588999999 898888754
No 308
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.07 E-value=0.12 Score=52.30 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=49.8
Q ss_pred EEEEcccCCCceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCce--EEEeccCCCCcCCCCeeEEEECCC----CCEEEEE
Q 012410 295 LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL--VTSFEDHLLWHPDCNTNNIYITSD----QDLIISY 366 (464)
Q Consensus 295 ~l~~l~gh~~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~--l~tl~gH~~~~~~~~v~svafSpD----g~~LaSg 366 (464)
.++++......+++++|.|||.+|++-. .++|++++. +|+. +..+..- ......-...|+|+|| |.+.+++
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v-~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV-SPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-CCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce-eecCCCCceeeEeccccccCCEEEEEE
Confidence 3455556667899999999999999999 999999987 4654 2222100 0000112578999995 7777777
Q ss_pred ec
Q 012410 367 CK 368 (464)
Q Consensus 367 s~ 368 (464)
+.
T Consensus 102 t~ 103 (347)
T 3das_A 102 TS 103 (347)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.97 E-value=0.47 Score=48.03 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=54.2
Q ss_pred CCCeEEEEECCC--CcEEE-Eccc-----CCCceEEEEEcC--CCc--EEEEEe---CCeEEEEeC-C-Cc---eEEEec
Q 012410 281 ENENLQILDVRN--AELME-VSRT-----EFMTPSAFIFLY--ENQ--LFLTFR---NRTVAVWNF-R-GE---LVTSFE 340 (464)
Q Consensus 281 ~D~tIkIWDv~t--g~~l~-~l~g-----h~~~v~sv~Fsp--dgq--llaS~s---D~TIklWd~-~-Ge---~l~tl~ 340 (464)
.+|.|-++|..+ ++..+ .+.+ ....+..+.+-+ ||. +++.-. +.+|.||++ . +. ++.+++
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 688899999873 34322 1222 223677888765 453 666633 579999998 2 33 455777
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 341 DHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 341 gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
+.... ..|.+++.|||.+.++..
T Consensus 161 g~~~~----~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 161 HKLLP----SVNDIVAVGPEHFYATND 183 (355)
T ss_dssp CTTCS----SEEEEEEEETTEEEEEES
T ss_pred cCCCC----CCceEEEeCCCCEEecCC
Confidence 65433 268999999999998864
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.45 E-value=0.39 Score=47.71 Aligned_cols=101 Identities=9% Similarity=0.097 Sum_probs=62.0
Q ss_pred cceeeEEEEccCCCe-EEEEeCCCeEEEEECCCCcEEEEc-------ccCCCceEEEEEcC----CCcEEEEEe-C----
Q 012410 261 HRNKKVDFIEQFNEK-LLVKQENENLQILDVRNAELMEVS-------RTEFMTPSAFIFLY----ENQLFLTFR-N---- 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~-lla~s~D~tIkIWDv~tg~~l~~l-------~gh~~~v~sv~Fsp----dgqllaS~s-D---- 323 (464)
..-+.++|.|+ +. ++++..++.|+++|. .|+..+.+ ......+..++|+| ++.+.++-+ .
T Consensus 18 ~~P~~i~~~pd--G~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPD--NHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECST--TCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCC--CCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 44589999885 56 888888899999984 45432211 11224578999999 488888855 2
Q ss_pred ---CeEEEEeCC-C--ce------EEEeccC-CCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 324 ---RTVAVWNFR-G--EL------VTSFEDH-LLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 324 ---~TIklWd~~-G--e~------l~tl~gH-~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
..|.-++.+ + ++ +..+... ...|. -..++|.|||.+.++-+
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~---~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF---GGRLVFDGKGYLFIALG 148 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC---CCCEEECSSSEEEEEEC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc---CccEEECCCCcEEEEEC
Confidence 245555553 2 11 1122210 11121 35799999998888764
No 311
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.43 E-value=1.7 Score=44.94 Aligned_cols=102 Identities=7% Similarity=0.132 Sum_probs=64.8
Q ss_pred cceeeEEEEccCCCeEEEEeCCC-eEEEEECCCCcEEE--Eccc------CCCceEEEEEcC----CCcEEEEEeC----
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNAELME--VSRT------EFMTPSAFIFLY----ENQLFLTFRN---- 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~-tIkIWDv~tg~~l~--~l~g------h~~~v~sv~Fsp----dgqllaS~sD---- 323 (464)
..-+.++|.|+ +.|+++...+ .|++++..+|+... .+.. ....+..++|+| ++.+.++-+.
T Consensus 27 ~~P~~~a~~pd--G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPD--NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCC--CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 45589999885 7788887664 79999876676432 2321 234577999999 6888887651
Q ss_pred ---------CeEEEEeCC-C--c------eEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 324 ---------RTVAVWNFR-G--E------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 324 ---------~TIklWd~~-G--e------~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
..|.-++.+ + + ++..+.. ...|. ...++|.|||.+.++-+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~---~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQ---SGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCC---EEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCC---CCeEeECCCCeEEEEECC
Confidence 234444442 2 1 1222332 11222 578999999999998653
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.19 E-value=1.6 Score=45.82 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=93.7
Q ss_pred EEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC----CCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCce-------
Q 012410 268 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE----FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGEL------- 335 (464)
Q Consensus 268 F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh----~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~------- 335 (464)
|....|..+... .|+.||.=++..+.--+++... +..+..+..||+|.+||-.++.+|.|-.+ .+.-
T Consensus 27 ~~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 27 FSSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EEETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHH
T ss_pred EEEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccc
Confidence 444444444444 3588888887744333333322 34677899999999999999999999887 3421
Q ss_pred -----EEEeccCCCCc-CCCCeeEEEECCCC---CEEEEEecCCCccccccCCCCeEEEEeCCCCe--EEEEEccCCCCC
Q 012410 336 -----VTSFEDHLLWH-PDCNTNNIYITSDQ---DLIISYCKAEPEDQWMEGSAGSINVSSILTGK--CLAKINATNCSP 404 (464)
Q Consensus 336 -----l~tl~gH~~~~-~~~~v~svafSpDg---~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~--cl~tl~gh~~~~ 404 (464)
.+++.=....+ +...|..+-|+|-| ..|+.=-. |++||+||+.... -. +|+-..+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts-----------D~~Ir~yDl~~s~~~P~-~L~k~~~-- 171 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE-----------DDTITMFDILNSQEKPI-VLNKPNN-- 171 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET-----------TSCEEEEETTCTTSCCE-EESCCCS--
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec-----------CCEEEEEEcccCCCCCc-chhcccc--
Confidence 12332110000 01128889999954 35555443 9999999997522 22 3431110
Q ss_pred CcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEee--CCCcEE
Q 012410 405 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVH 460 (464)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs--~DgtVr 460 (464)
.-.+ .. -...|.+++|+++|=+||..+ +.|-|.
T Consensus 172 -------------------~fg~---d~-~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 172 -------------------SFGL---DA-RVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp -------------------EEES---CS-SCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred -------------------ccCC---Cc-ccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 0000 00 114899999999999999966 888774
No 313
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.17 E-value=0.48 Score=49.18 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=47.1
Q ss_pred EEEcccCCCceEEEEEcCCCcEEEEEeC-CeEEEEeC-CCce--EEEeccCCC-CcCCCCeeEEEECC----CCCEEEEE
Q 012410 296 MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF-RGEL--VTSFEDHLL-WHPDCNTNNIYITS----DQDLIISY 366 (464)
Q Consensus 296 l~~l~gh~~~v~sv~FspdgqllaS~sD-~TIklWd~-~Ge~--l~tl~gH~~-~~~~~~v~svafSp----Dg~~LaSg 366 (464)
++++......+++++|.|||+++++-.. +.|.+++. +|+. +..+..-.. .........|+|+| ++.+.+++
T Consensus 19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 3444444567999999999999999884 57998887 4664 333432110 00011256899999 67777777
Q ss_pred ec
Q 012410 367 CK 368 (464)
Q Consensus 367 s~ 368 (464)
+.
T Consensus 99 s~ 100 (454)
T 1cru_A 99 TF 100 (454)
T ss_dssp EE
T ss_pred ec
Confidence 53
No 314
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.07 E-value=0.41 Score=50.08 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=48.9
Q ss_pred EEEEcccCCCceEEEEEcCCCc--EEEEEeCCeEEEEeCCCce----EEEeccCCCC----cCCCCeeEEEECCC----C
Q 012410 295 LMEVSRTEFMTPSAFIFLYENQ--LFLTFRNRTVAVWNFRGEL----VTSFEDHLLW----HPDCNTNNIYITSD----Q 360 (464)
Q Consensus 295 ~l~~l~gh~~~v~sv~Fspdgq--llaS~sD~TIklWd~~Ge~----l~tl~gH~~~----~~~~~v~svafSpD----g 360 (464)
+++++......|++++|.|||. +|++-..+.|++++.+|.. +..+..-... ...--...|+|+|| +
T Consensus 5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~ 84 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG 84 (463)
T ss_dssp EEEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred EEEEeccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence 4455555557899999999995 8888779999999875542 2222211000 00012568999997 8
Q ss_pred CEEEEEec
Q 012410 361 DLIISYCK 368 (464)
Q Consensus 361 ~~LaSgs~ 368 (464)
.+.++++.
T Consensus 85 ~lYv~yt~ 92 (463)
T 2wg3_C 85 KLYVSYTT 92 (463)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 88888875
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=93.53 E-value=1.8 Score=49.19 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=33.6
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+.+++.++|..+|++-|. |+++||||+.+|+|+++..
T Consensus 238 ~~~~~~~~~~~~lftl~~-----------D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSL-----------DYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEET-----------TCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEEC-----------CCEEEEEECCCCCeEeeec
Confidence 677888899999999997 9999999999999999864
No 316
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.47 E-value=7.5 Score=39.59 Aligned_cols=193 Identities=15% Similarity=0.221 Sum_probs=104.7
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE-eCC-----CceeEEEEEcCC-CcEEEEEeeC--
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI-RSS-----SHVPLKILSIED-GTVLKVFYHL-- 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf-s~s-----~d~tIklWdi~t-G~~l~tl~~~-- 259 (464)
+.-. +|..++||==+ ..++.|+|+++-+.|++.. .+.|-=-++ ++. .+..|.-|+++. -+..+.|..|
T Consensus 71 sAIM-nP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~ 148 (365)
T 2xzh_A 71 SAIM-NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSS 148 (365)
T ss_dssp EEEE-CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGG
T ss_pred eeee-CCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchh
Confidence 4445 48999988766 6789999999999998765 333322222 332 445678888873 4566777632
Q ss_pred CcceeeEEEEccCCCeEEE--E--e----CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCc----EEEEEe-C---
Q 012410 260 LHRNKKVDFIEQFNEKLLV--K--Q----ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ----LFLTFR-N--- 323 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla--~--s----~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdgq----llaS~s-D--- 323 (464)
+....=+.+..+.+++.++ | + -.|.++|+.++. +.-+.+.||...--. |-.+|. .|.++. -
T Consensus 149 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~--~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 149 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQ--FKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEE--ECCTTCSSCEEEEEEEEEETT
T ss_pred cccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEE--EecCCCCCCceEEEEEEecCC
Confidence 2222334444433344322 3 2 337889999655 456778888421111 222322 333433 2
Q ss_pred -CeEEEEeC-C---CceEEEeccC-------CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 012410 324 -RTVAVWNF-R---GELVTSFEDH-------LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 391 (464)
Q Consensus 324 -~TIklWd~-~---Ge~l~tl~gH-------~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG 391 (464)
+.+.|-++ + |.. .|... .....|-.| ++.+|+--.+|.--.+ -|.|.|.|++||
T Consensus 226 g~kLhIiEi~~~~~~~~--~f~kk~vdi~fppea~~DFPV-amqvs~kygviyviTK-----------~G~ihlyDleTg 291 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQ--PFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITK-----------YGYIHLYDLETG 291 (365)
T ss_dssp EEEEEEEECSSCCTTCC--CCCCEEEEECCCTTCTTCCEE-EEEEETTTTEEEEEET-----------TSEEEEEETTTC
T ss_pred CcEEEEEEcCCCCCCCC--CcccccceeeCCccccCCceE-EEEecccCCEEEEEeC-----------CcEEEEEEcccC
Confidence 35666665 1 211 11100 000001111 2333444444444444 699999999999
Q ss_pred eEEEEEccCC
Q 012410 392 KCLAKINATN 401 (464)
Q Consensus 392 ~cl~tl~gh~ 401 (464)
.|+..-+=.+
T Consensus 292 t~i~~nrIS~ 301 (365)
T 2xzh_A 292 TCIYMNRISG 301 (365)
T ss_dssp CEEEEEECCS
T ss_pred cEEEEeccCC
Confidence 9998755444
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.81 E-value=1.7 Score=43.81 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=62.1
Q ss_pred EEecCCCcEEEEeCCCCeEEEEecCC---C-E-----------eEEEEeCCCceeEEEEEcCCCcEEEEEeeC-Ccceee
Q 012410 202 TYSAQDSIYKVFDLKNYTMLYSISDK---H-V-----------QEIKIRSSSHVPLKILSIEDGTVLKVFYHL-LHRNKK 265 (464)
Q Consensus 202 aSgs~D~tiKlWdl~tg~~l~tl~~~---~-V-----------~~Vafs~s~d~tIklWdi~tG~~l~tl~~~-~~~~~~ 265 (464)
.-++.|+.+--.|.++|+.+-++... . + .-+.+.|..|+.|..++.++|.....+.-. +-....
T Consensus 14 ~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP 93 (339)
T 2be1_A 14 IAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSP 93 (339)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCS
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccc
Confidence 33555666666666666665554421 1 1 123345678999999999999666555410 000111
Q ss_pred EEEEc----------cCCCeEEEEeCCCeEEEEECCCCcEEEEccc
Q 012410 266 VDFIE----------QFNEKLLVKQENENLQILDVRNAELMEVSRT 301 (464)
Q Consensus 266 V~F~~----------~~~~~lla~s~D~tIkIWDv~tg~~l~~l~g 301 (464)
+.+.. ..++.+.+++.++++.-.|++||+.+..+..
T Consensus 94 ~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 94 LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 22100 0257888999999999999999999987764
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.65 E-value=12 Score=39.60 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=107.9
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE-eCC-----CceeEEEEEcCC-CcEEEEEeeC--
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI-RSS-----SHVPLKILSIED-GTVLKVFYHL-- 259 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf-s~s-----~d~tIklWdi~t-G~~l~tl~~~-- 259 (464)
+.-. +|..++||==+ ..++.|+|+++-+.+++.. .+.|-=-++ ++. .+..|.-|+++. -+..+.|..|
T Consensus 70 sAIM-nP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~ 147 (494)
T 1bpo_A 70 SAIM-NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSS 147 (494)
T ss_dssp EEEE-CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGG
T ss_pred eeee-CCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchh
Confidence 4445 48888988765 6799999999999998765 333322222 332 556788888863 3566777632
Q ss_pred CcceeeEEEEccCCCeEEE--E--e----CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCC----cEEEEEe-C---
Q 012410 260 LHRNKKVDFIEQFNEKLLV--K--Q----ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN----QLFLTFR-N--- 323 (464)
Q Consensus 260 ~~~~~~V~F~~~~~~~lla--~--s----~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspdg----qllaS~s-D--- 323 (464)
+....=+.+..+.+++.++ | + -.|.++|+.++.+. -+.+.||...--+ |-.+| ..|.++. -
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~--~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ--FKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEE--EECTTCSSEEEEEEEEECSTT
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEE--EecCCCCCCceEEEEEEecCC
Confidence 2222334443333344332 2 2 34788999976554 5677888432211 22333 2233433 2
Q ss_pred -CeEEEEeC-CC-ceEEEecc-------CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 324 -RTVAVWNF-RG-ELVTSFED-------HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 324 -~TIklWd~-~G-e~l~tl~g-------H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
+.+.|-++ +. +--..|.. -.....|..| ++.+|+.-.+|.--.+ -|.|.|.|++||.|
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv-amqvs~kygviyviTK-----------~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITK-----------YGYIHLYDLETGTC 292 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE-EEEEETTTTEEEEEET-----------TSEEEEEETTTCCE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee-EEEecccCCEEEEEec-----------CceEEEEeccccee
Confidence 46666665 11 00011110 0000011112 4555665666655555 79999999999999
Q ss_pred EEEEccCC
Q 012410 394 LAKINATN 401 (464)
Q Consensus 394 l~tl~gh~ 401 (464)
+..=+=.+
T Consensus 293 i~~nrIs~ 300 (494)
T 1bpo_A 293 IYMNRISG 300 (494)
T ss_dssp EEEEECCS
T ss_pred eeeecccC
Confidence 98755443
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.93 E-value=1.3 Score=42.77 Aligned_cols=107 Identities=9% Similarity=0.068 Sum_probs=65.7
Q ss_pred CCceEEEEEcCCCcEEEEEeCCeEEEEeCC---Cce-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 012410 303 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 374 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~sD~TIklWd~~---Ge~-----l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~ 374 (464)
...+..++|.|||.+.|. +++ +||-.+ ++. ..+--|...|.. -..++|-|+|.+.++ +
T Consensus 40 w~~~~~laf~P~G~LYaV-~~G--~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~---F~a~~fD~~G~LYav-~------- 105 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGV-LND--KIYKGTPPTHDNDNWMGRAKKIGNGGWNQ---FQFLFFDPNGYLYAV-S------- 105 (236)
T ss_dssp CTTCSEEEECTTSCEEEE-ETT--EEEEESCCCSTTCCHHHHCEEEECSCGGG---CSEEEECTTSCEEEE-E-------
T ss_pred cccceeEEECCCccEEEE-eCC--eEEEECCCCCCcccccccccEeccccccc---ceEEEECCCCCEEEe-C-------
Confidence 345669999999999998 766 466642 111 123334444432 368999999999998 3
Q ss_pred cccCCCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccc-ccc-ccccCEEEEEEcCCCCEEEE
Q 012410 375 WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS-TVG-EALEDITSLFYDEERNEIYT 452 (464)
Q Consensus 375 ~~~s~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~~V~slafspDg~~LaS 452 (464)
||.|.-|+-.+..+ ..|.-.+ .++ ...+.+..|+|+|||.+-|-
T Consensus 106 -----dG~iyr~~pP~~~~-----------------------------~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav 151 (236)
T 1tl2_A 106 -----KDKLYKASPPQSDT-----------------------------DNWIARATEVGSGGWSGFKFLFFHPNGYLYAV 151 (236)
T ss_dssp -----TTEEEEESCCCSTT-----------------------------CCHHHHSEEEECSSGGGEEEEEECTTSCEEEE
T ss_pred -----CCEEEEeCCCcCCC-----------------------------CceeccccEeccCCCCceEEEEECCCceEEEE
Confidence 78887666322111 1111111 111 23348899999999995555
Q ss_pred eeCCCcE
Q 012410 453 GNRHGLV 459 (464)
Q Consensus 453 gs~DgtV 459 (464)
. |+.+
T Consensus 152 ~--dg~l 156 (236)
T 1tl2_A 152 H--GQQF 156 (236)
T ss_dssp E--TTEE
T ss_pred e--CCcE
Confidence 4 7765
No 320
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.88 E-value=10 Score=36.90 Aligned_cols=110 Identities=9% Similarity=0.025 Sum_probs=64.8
Q ss_pred ceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEe----CCCeEEEEECCCCcEEEEcccCCCceEEEEEcCC
Q 012410 239 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 314 (464)
Q Consensus 239 d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s----~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fspd 314 (464)
...|...++..++. ..|... ...+|++ .+++|.-.. .+..|..-++...+ .+.+..+.. .+|+|+
T Consensus 87 ~~~Iy~i~~dg~~~-~~l~~~----~~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~ 155 (302)
T 3s25_A 87 RNSLCRIKRNGHGS-TVLDPD----PCIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTS 155 (302)
T ss_dssp SEEEEEEETTSCCC-EEEECS----CEEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEE
T ss_pred CCeEEEEeCCCCcc-eEeecC----CccEEEE-eCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEE
Confidence 45788888886653 334321 2235666 356776654 44566666765444 344443422 457889
Q ss_pred CcEEEEEe--CCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 012410 315 NQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 367 (464)
Q Consensus 315 gqllaS~s--D~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs 367 (464)
|+.|.=.+ ..+|.+-+++|.-.+.+.... . ...++|+|++|+=..
T Consensus 156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~-------~-~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 156 DRYFYYNNPKNGQLYRYDTASQSEALFYDCN-------C-YKPVVLDDTNVYYMD 202 (302)
T ss_dssp TTEEEEECTTTCCEEEEETTTTEEEEEECSC-------E-EEEEEEETTEEEEEE
T ss_pred CCEEEEEeCCCceEEEEECCCCCEEEEeCCC-------c-cceeeecCCEEEEEE
Confidence 98887554 568888888765545543221 2 234679999997543
No 321
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=90.77 E-value=6.3 Score=37.88 Aligned_cols=98 Identities=7% Similarity=-0.076 Sum_probs=59.1
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcE-------EEEcc-cCCCceEEEEEcCCCcEEEEEeCCeEEEEeC-
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-------MEVSR-TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF- 331 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~-------l~~l~-gh~~~v~sv~FspdgqllaS~sD~TIklWd~- 331 (464)
+....++|.| + +.|-+- .++.+.--+..+++. .++-. +..+ -.++.|-|+|.+.++ +|+.|-=|+-
T Consensus 41 ~~~~~laf~P-~-G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSP-G-GELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECT-T-SCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred ccceeEEECC-C-ccEEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence 4557888888 3 445444 555555555545221 11111 1111 357889999999999 8898877775
Q ss_pred C-Cce--E--EEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 012410 332 R-GEL--V--TSFEDHLLWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 332 ~-Ge~--l--~tl~gH~~~~~~~~v~svafSpDg~~LaSg 366 (464)
+ |.- + .+.-+...|-. +..|+|.|||.+-|-.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~---~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSG---FKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGG---EEEEEECTTSCEEEEE
T ss_pred cCCCCceeccccEeccCCCCc---eEEEEECCCceEEEEe
Confidence 3 221 0 12223344532 7899999999998765
No 322
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.54 E-value=6.5 Score=40.94 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=64.7
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCc---EEEEcc-----c----CCCceEEEEEcCC----CcEEEEEe-C
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSR-----T----EFMTPSAFIFLYE----NQLFLTFR-N 323 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~---~l~~l~-----g----h~~~v~sv~Fspd----gqllaS~s-D 323 (464)
..-+.++|.|+..++|+++...+.|++++..... .+..+. + ....+..++|.|+ +.+.++-+ +
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4448999988522369999999999999843221 112111 1 1345778999997 88888865 2
Q ss_pred C----------eEEE--EeCC-C----------ceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 324 R----------TVAV--WNFR-G----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 324 ~----------TIkl--Wd~~-G----------e~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
. ..+| |.++ + +.|.++......|. ...|+|.|||.+.++-+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~---g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL---GGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC---EEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc---CCcEeECCCCcEEEEeCC
Confidence 1 1344 4442 1 23334432122233 578999999999998775
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=85.56 E-value=23 Score=37.04 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=73.8
Q ss_pred EEEcCCCcEEEEEeCCeEEEEeCC-CceEEEeccC--CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 012410 309 FIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 385 (464)
Q Consensus 309 v~FspdgqllaS~sD~TIklWd~~-Ge~l~tl~gH--~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIkl 385 (464)
+.-..+|.-+..+-++.||.-++. +.--++|.-- .... .+..+..||+|++||-.+ +.+|.|
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~---~i~qlvlSpsG~lLAl~g------------~~~V~V 90 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLD---DTFHVISSTSGDLLCLFN------------DNEIFV 90 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCC---TTCEEEECTTSSEEEEEC------------SSEEEE
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccC---ceeEEEECCCCCEEEEec------------CCeEEE
Confidence 333466777777778899998884 4434444322 2221 156799999999999986 688988
Q ss_pred EeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCC---CEEEEeeCCCcEEec
Q 012410 386 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER---NEIYTGNRHGLVHVW 462 (464)
Q Consensus 386 Wdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg---~~LaSgs~DgtVrlW 462 (464)
=.+..+.. .....+ +++.-+-.+..+.......-..|..+.|+|-| .+|+.=-.|++||+|
T Consensus 91 v~LP~~~~-------~~~~~~---------~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~y 154 (452)
T 3pbp_A 91 MEVPWGYS-------NVEDVS---------IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMF 154 (452)
T ss_dssp EECCTTCS-------CCCCHH---------HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEE
T ss_pred EEecCccc-------cCcccc---------cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEE
Confidence 88764321 100000 00000000111111100011279999999965 489999999999999
Q ss_pred cC
Q 012410 463 SN 464 (464)
Q Consensus 463 d~ 464 (464)
|.
T Consensus 155 Dl 156 (452)
T 3pbp_A 155 DI 156 (452)
T ss_dssp ET
T ss_pred Ec
Confidence 84
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.96 E-value=16 Score=43.84 Aligned_cols=189 Identities=15% Similarity=0.203 Sum_probs=96.7
Q ss_pred CCCCcEEEEecCCCcEEEEeCCCCeEEEEec-CCCEeEEEE-eCC-----CceeEEEEEcCC-CcEEEEEeeC--Cccee
Q 012410 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI-RSS-----SHVPLKILSIED-GTVLKVFYHL--LHRNK 264 (464)
Q Consensus 195 ~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~-~~~V~~Vaf-s~s-----~d~tIklWdi~t-G~~l~tl~~~--~~~~~ 264 (464)
+|..++||==+ ..++.|+|+.+-+.+++.. .+.|-=-++ +|. .+..|.-|+++. -++.+.|..| +...-
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~Q 152 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQ 152 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCe
Confidence 37888888665 6799999999988887654 233221111 332 556788888863 3444555421 11122
Q ss_pred eEEEEccCCCeEEE--E------eCCCeEEEEECCCCcEEEEcccCCCceEEEEEc--CCCcEEEEEe-C----CeEEEE
Q 012410 265 KVDFIEQFNEKLLV--K------QENENLQILDVRNAELMEVSRTEFMTPSAFIFL--YENQLFLTFR-N----RTVAVW 329 (464)
Q Consensus 265 ~V~F~~~~~~~lla--~------s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~Fs--pdgqllaS~s-D----~TIklW 329 (464)
=|.+..+.+++.++ | .-.|.++|+.+..+. -+.+.||...-..+... +....+.++. - +.+.|-
T Consensus 153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~ 231 (1630)
T 1xi4_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 231 (1630)
T ss_pred eEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEE
Confidence 22332322333322 2 245899999976543 45677775332222221 2222233333 2 466666
Q ss_pred eC-CC-ceEEEeccCCC-------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEE
Q 012410 330 NF-RG-ELVTSFEDHLL-------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 397 (464)
Q Consensus 330 d~-~G-e~l~tl~gH~~-------~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 397 (464)
++ +. .--..|..-.- ...|..| ++.+|+.-.+|.--.+ -|.|.+.|+.||.|+..=
T Consensus 232 Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk-----------~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITK-----------YGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ecCCCccCCCCCccccccccCCcccccCcce-EEEeccccCEEEEEec-----------CceEEEEecccchhhhhc
Confidence 65 11 00011111000 0000111 3444444444444444 699999999999998753
No 325
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.30 E-value=0.82 Score=52.74 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=32.8
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 398 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 398 (464)
+.+++.++|..+|++-|. |+++||||+.+|+|+++..
T Consensus 240 ~vs~~~~~~~~~lftL~~-----------D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSL-----------DYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBT-----------TCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeC-----------CCEEEEEECCCCCeEEeec
Confidence 456778899999999997 9999999999999999864
No 326
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=82.57 E-value=78 Score=36.69 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=57.0
Q ss_pred CeEEEEECCCCcEEEEcccC-CCceEEEEEcCCCcEEEEEeCCeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCC-
Q 012410 283 ENLQILDVRNAELMEVSRTE-FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSD- 359 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh-~~~v~sv~FspdgqllaS~sD~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpD- 359 (464)
+.|++.+...+..+...... ...+.+.+.+ +.+++++ +++.|-+..+ +|++.. .+.-... ..|.++++.|.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n-~~~vvva-~g~~l~~fel~~~~L~~-~~~~~l~---~evscl~i~~~~ 565 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCN-SSQVVVA-VGRALYYLQIHPQELRQ-ISHTEME---HEVACLDITPLG 565 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEEC-SSEEEEE-ETTEEEEEEEETTEEEE-EEEEECS---SCEEEEECCCCS
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeC-CCEEEEE-ECCEEEEEEeeCCceee-ecccCCC---CceEEEEeecCC
Confidence 34556665544445443322 2345544433 4565555 5567777777 466433 2211111 12788999874
Q ss_pred -----CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 012410 360 -----QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 395 (464)
Q Consensus 360 -----g~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~ 395 (464)
++++|-|+. .|++|+|.++.+-+.+.
T Consensus 566 ~~~~~s~~~aVg~~----------~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 566 DSNGLSPLCAIGLW----------TDISARILKLPSFELLH 596 (1158)
T ss_dssp SSTTCCSEEEEEET----------TTTEEEEEETTTCCEEE
T ss_pred CCcccccEEEEEEC----------CCCEEEEEECCCCCeEE
Confidence 479999984 38999999998766554
No 327
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=82.04 E-value=32 Score=31.84 Aligned_cols=100 Identities=7% Similarity=-0.001 Sum_probs=55.6
Q ss_pred CeEEEEECCCCcEEEEc--ccCCCceEEEEEcCCCcEEEEEe-C-----CeEEEEeCCCceEEEeccCCCCcCCCCeeEE
Q 012410 283 ENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l--~gh~~~v~sv~FspdgqllaS~s-D-----~TIklWd~~Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
..+.++|+.+.+-.+.- ...-....+ ...++++++.|+ + ..+.++|........+..-.. +...-..+
T Consensus 128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~ 203 (301)
T 2vpj_A 128 TSMERYDPNIDQWSMLGDMQTAREGAGL--VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT--KRSGAGVA 203 (301)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCBSCEE--EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS--CCBSCEEE
T ss_pred ceEEEEcCCCCeEEECCCCCCCcccceE--EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc--ccccceEE
Confidence 46889999998765432 111111122 234888888877 5 368888985444444432211 11111122
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
. -++++++.|+.... ..-..|.++|+.+++-.
T Consensus 204 ~--~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 204 L--LNDHIYVVGGFDGT------AHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp E--ETTEEEEECCBCSS------SBCCCEEEEETTTTEEE
T ss_pred E--ECCEEEEEeCCCCC------cccceEEEEeCCCCcEE
Confidence 2 37788888775210 01357899999887654
No 328
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.82 E-value=6.3 Score=42.80 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=65.3
Q ss_pred eEEEEECCC----CcEEEEcccCCCceEEEEEcCCCcEEEEEe--CCeEEEEeCC-------Cce-------EEEeccCC
Q 012410 284 NLQILDVRN----AELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-------GEL-------VTSFEDHL 343 (464)
Q Consensus 284 tIkIWDv~t----g~~l~~l~gh~~~v~sv~FspdgqllaS~s--D~TIklWd~~-------Ge~-------l~tl~gH~ 343 (464)
.+++.|.+. +.-+..+..-...|-.+.++|||+.++.++ +.||-+.|++ +++ +...+-=.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 578888876 332222222234566788999999998888 9999999964 222 23333212
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC----------eEEEEEccCC
Q 012410 344 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----------KCLAKINATN 401 (464)
Q Consensus 344 ~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG----------~cl~tl~gh~ 401 (464)
. -.-.+|.++|.--.|--- |..|--||+... ..+.++.-|-
T Consensus 379 G------PlHt~Fd~~G~aYTtlfi-----------dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y 429 (638)
T 3sbq_A 379 G------PLHTTFDGRGNAYTTLFI-----------DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY 429 (638)
T ss_dssp C------EEEEEECSSSEEEEEETT-----------TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred c------ccEEEECCCCceEeeeee-----------cceEEEEeccHHHHHhcCccCCeeeecccccc
Confidence 2 356899999944333323 788999999764 4666776554
No 329
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.70 E-value=7.6 Score=44.03 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCcEEEEEe-CCeEEEEeC-CCceEEEec
Q 012410 304 MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFE 340 (464)
Q Consensus 304 ~~v~sv~FspdgqllaS~s-D~TIklWd~-~Ge~l~tl~ 340 (464)
..+.+++..++...+.+-+ |+++|+||+ +|+|+.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3567778888989999999 999999999 799998753
No 330
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=78.50 E-value=1e+02 Score=35.63 Aligned_cols=169 Identities=12% Similarity=0.101 Sum_probs=96.7
Q ss_pred eEEEEEcCCCcEEEEEe-eCCcceeeEEEEccC---CCeEEEEe----------CCCeEEEEECCCCcEEEEccc-CCCc
Q 012410 241 PLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQF---NEKLLVKQ----------ENENLQILDVRNAELMEVSRT-EFMT 305 (464)
Q Consensus 241 tIklWdi~tG~~l~tl~-~~~~~~~~V~F~~~~---~~~lla~s----------~D~tIkIWDv~tg~~l~~l~g-h~~~ 305 (464)
.|+|.|-.+.+.+.+++ .....+.+++-.... .+.+++|. ..|-|.++++..+++..+... ..+.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 58999999999988876 222344555544322 25676663 126799999876654433222 2356
Q ss_pred eEEEEEcCCCcEEEEEeCCeEEEEeCC-CceEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 012410 306 PSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 383 (464)
Q Consensus 306 v~sv~FspdgqllaS~sD~TIklWd~~-Ge~l~tl~g-H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtI 383 (464)
|.+++ .-+|+++| +-.++|+||++. .+.++ .+. +-.. |..+.+...|++|+-|.. -.+|
T Consensus 888 v~al~-~~~g~Lla-~ig~~l~vy~l~~~~~L~-~~~~~~~~-----i~~~~l~~~~~~I~vgD~-----------~~Sv 948 (1158)
T 3ei3_A 888 VYSMV-EFNGKLLA-SINSTVRLYEWTTEKELR-TECNHYNN-----IMALYLKTKGDFILVGDL-----------MRSV 948 (1158)
T ss_dssp EEEEE-EETTEEEE-EETTEEEEEEECTTSCEE-EEEEECCC-----SCEEEEEEETTEEEEEES-----------SBCE
T ss_pred CEEEe-eeCCEEEE-EcCCEEEEEECCCCceEE-EEeecccc-----EEEEEEeccCCEEEEEEh-----------hheE
Confidence 88875 12565554 446899999994 44444 221 1111 223445456788887753 3445
Q ss_pred EEE--eCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEeeCCCcEEe
Q 012410 384 NVS--SILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 461 (464)
Q Consensus 384 klW--di~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafspDg~~LaSgs~DgtVrl 461 (464)
-+. +-..++ +..+-.+.. -.+|+++.|=-+ .+++.+..+|.+.+
T Consensus 949 ~~~~y~~~~~~-L~~~a~D~~--------------------------------~~~vta~~~ld~-~t~l~aD~~gNl~v 994 (1158)
T 3ei3_A 949 LLLAYKPMEGN-FEEIARDFN--------------------------------PNWMSAVEILDD-DNFLGAENAFNLFV 994 (1158)
T ss_dssp EEEEEETTTTE-EEEEEECCS--------------------------------CBCEEEEEEEET-TEEEEEETTSEEEE
T ss_pred EEEEEEcCCCe-EEEEEeecc--------------------------------cccEEEEEEEcc-CcEEEEcCCCcEEE
Confidence 543 333333 222222211 027888888544 36777888888776
Q ss_pred c
Q 012410 462 W 462 (464)
Q Consensus 462 W 462 (464)
.
T Consensus 995 l 995 (1158)
T 3ei3_A 995 C 995 (1158)
T ss_dssp E
T ss_pred E
Confidence 4
No 331
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.45 E-value=11 Score=43.43 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=29.3
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEec
Q 012410 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (464)
Q Consensus 190 ~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~ 225 (464)
+++.. ++.++|.+=+.|+++|+||+.+|+|+.+..
T Consensus 242 s~~~~-~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 242 SMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CCEEE-TTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred Eeecc-CCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44554 678899899999999999999999998753
No 332
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}
Probab=77.33 E-value=30 Score=29.85 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=61.7
Q ss_pred eCCCeEEEEECCCCcEEEEcccCC-CceEEEEEcCC----CcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCCe-
Q 012410 280 QENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYE----NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNT- 351 (464)
Q Consensus 280 s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~Fspd----gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~v- 351 (464)
-.+++.+|-++.+|+|+.+..+.. ..-.-+.+... -+..+... +++.+|-+. +|.||..-.+...- ...|
T Consensus 24 ~~~g~y~i~n~~sg~cLdv~~~~~~~g~~v~~~~c~~~~~Q~W~~~~~~~g~y~i~~~~sg~cLdv~~~~~~~--G~~v~ 101 (165)
T 3pg0_A 24 MGDGYYKLVARHSGKALDVENASTSDGANVIQYSYSGGDNQQWRLVDLGDGYYKLVARHSGKALDVENASTSD--GANVI 101 (165)
T ss_dssp --CCEEEEEETTTCCEEEEGGGCCSTTCBEEEECCCCCGGGCEEEEEEETTEEEEEETTTCCEEEEGGGCCST--TCBEE
T ss_pred CCCCEEEEEECCCCCEEEeCCCCCCCCCEEEEECCCCCccceEEEEECCCCEEEEEECCCCCEEEeCCCCCCC--CCEEE
Confidence 367899999999999998865322 11112223322 23444444 889999998 69998754332110 0001
Q ss_pred -eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 352 -NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 352 -~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
+...=+++++..+... .+|+.+|-+..+|+||..-.+
T Consensus 102 ~~~c~~~~~Q~W~~~~~-----------g~g~~~i~~~~sg~cLdv~~~ 139 (165)
T 3pg0_A 102 QYSYSGGDNQQWRLVDL-----------GDGYYKLVARHSGKALDVENA 139 (165)
T ss_dssp EECCCCCGGGCEEEEEC-----------SSSCEEEEETTTCCEEEEGGG
T ss_pred EEcCCCCCccEEEEEEC-----------CCCEEEEEECCCCcEEEcCCC
Confidence 1111123445554432 278899999999999986543
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=75.74 E-value=6.2 Score=39.58 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=67.9
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEcccC-CCceEEEE---EcCCCcEEEEE-e-CCeEEEEeC-CCceEEEeccCCCCc
Q 012410 274 EKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFI---FLYENQLFLTF-R-NRTVAVWNF-RGELVTSFEDHLLWH 346 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~~l~gh-~~~v~sv~---FspdgqllaS~-s-D~TIklWd~-~Ge~l~tl~gH~~~~ 346 (464)
+.+++++.||.|.-.|..+|+.+-.+... ...+.... ...++..++-. . ||.|-.+|. +|+....+.-....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv- 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV- 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH-
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce-
Confidence 68888999999999999999988776553 11222210 01133444442 3 777777776 46544333211110
Q ss_pred CCCCeeEEEEC-----------CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 347 PDCNTNNIYIT-----------SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 347 ~~~~v~svafS-----------pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
. ...+.++ .++..+..|+. +|++---|+.||+.+.++...
T Consensus 90 ~---~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~-----------~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 90 S---TSPLHLKTNIVVNDSGKIVEDEKVYTGSM-----------RTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp T---TCSEEEECC----------CCEEEEECEE-----------EEEEEEEETTTCCEEEEESTT
T ss_pred e---ccccccCCCceeecccccccCCEEEEEec-----------CCEEEEEECCCCcEEEEEecC
Confidence 0 0002111 14556667776 899999999999999998643
No 334
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=75.71 E-value=73 Score=32.39 Aligned_cols=120 Identities=16% Similarity=0.260 Sum_probs=79.8
Q ss_pred CeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCC--ceEEEeccCCCCcCCCC
Q 012410 274 EKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG--ELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 274 ~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~G--e~l~tl~gH~~~~~~~~ 350 (464)
.+++| .. ..+++|.|+++.+.++...=.. .|.=-.|-.+.. |+=-.+..|--|++.| +.++.|+-|..- .+|.
T Consensus 78 ~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~-L~lVT~taVyHWs~~~~s~P~kvFdR~~~L-~~~Q 153 (365)
T 2xzh_A 78 SKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT-VALVTDNAVYHWSMEGESQPVKMFDRHSSL-AGCQ 153 (365)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSE-EEEEESSEEEEEESSTTCCCEEEEECCGGG-TTCE
T ss_pred ccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCCe-EEEEcCCcEEEEcccCCCCCceeeecchhc-ccce
Confidence 56666 44 7899999999999887643221 222222333333 3333367899999954 689999998875 3577
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
|-+-..++|+++++-.+-+..+. .-.|.+-|+.++.+. -+.|.||..
T Consensus 154 IInY~~d~~~kW~~l~GI~~~~~----~v~G~mQLYS~er~~-sQ~ieGhaa 200 (365)
T 2xzh_A 154 IINYRTDAKQKWLLLTGISAQQN----RVVGAMQLYSVDRKV-SQPIEGHAA 200 (365)
T ss_dssp EEEEEECTTSCEEEEEEEEEETT----EEEEEEEEEETTTTE-EEEECCSEE
T ss_pred EEEEEECCCCCEEEEEeEeccCC----ccceeEEEEeecccc-cceeeeeee
Confidence 77888899999887766532211 125889999986544 466777764
No 335
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=75.44 E-value=2.5 Score=46.86 Aligned_cols=32 Identities=3% Similarity=0.067 Sum_probs=28.3
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 357 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.+++.+|++-|. |+++||||+.||+|+++..-
T Consensus 228 ~~~~~fLftL~~-----------Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQ-----------NCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEET-----------TCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEc-----------CCeEEEEEcCCCceEEeecc
Confidence 556889999997 99999999999999998755
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=75.12 E-value=28 Score=37.88 Aligned_cols=120 Identities=9% Similarity=0.117 Sum_probs=77.9
Q ss_pred eEEEEEcCC----Cc-EEEEEeeCCcceeeEEEEccCCCeEEEEe-CCCeEEEEECCC------CcE-------EEEccc
Q 012410 241 PLKILSIED----GT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN------AEL-------MEVSRT 301 (464)
Q Consensus 241 tIklWdi~t----G~-~l~tl~~~~~~~~~V~F~~~~~~~lla~s-~D~tIkIWDv~t------g~~-------l~~l~g 301 (464)
.|++.|... |. .+.-+.-. ..-..|.++| ++.++.+++ .+-|+-+.|+.. ++. .....
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~p-ksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e- 375 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVP-KNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE- 375 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEES-SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-
T ss_pred CeeEEccccccccCCceEEEEeCC-CCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-
Confidence 478888876 32 22222211 1125678888 466666665 899999999874 211 11111
Q ss_pred CCCceEEEEEcCCCcEEEEEe-CCeEEEEeCC-C----------ceEEEeccCCCCcCCCCeeEEEE------CCCCCEE
Q 012410 302 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----------ELVTSFEDHLLWHPDCNTNNIYI------TSDQDLI 363 (464)
Q Consensus 302 h~~~v~sv~FspdgqllaS~s-D~TIklWd~~-G----------e~l~tl~gH~~~~~~~~v~svaf------SpDg~~L 363 (464)
---.|.-.+|.++|....|-- |..|--||+. . ..+..+.-|... --+.- .|||++|
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp------GH~~~~~get~~~dGk~l 449 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP------GHLHASLCETNEADGKWL 449 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE------EEEEETTTTSTTCCSCEE
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC------cccccCCCccCCCCccEE
Confidence 124677889999997777766 9999999973 2 466677766553 12333 7999999
Q ss_pred EEEecC
Q 012410 364 ISYCKA 369 (464)
Q Consensus 364 aSgs~~ 369 (464)
+|.++-
T Consensus 450 v~lnK~ 455 (638)
T 3sbq_A 450 VALSKF 455 (638)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 999983
No 337
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=70.86 E-value=80 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=16.5
Q ss_pred CEEEEEEcCC-CCEEEEeeCCCcE
Q 012410 437 DITSLFYDEE-RNEIYTGNRHGLV 459 (464)
Q Consensus 437 ~V~slafspD-g~~LaSgs~DgtV 459 (464)
.|.+|+++|+ ...|+.|...+..
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~gl~ 256 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCGIY 256 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCeEE
Confidence 6899999996 4667777665543
No 338
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=70.04 E-value=13 Score=40.05 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=43.0
Q ss_pred eEEEECCCCCEEEEEecCCCccccccC-CCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCcccccccccccccc
Q 012410 352 NNIYITSDQDLIISYCKAEPEDQWMEG-SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 430 (464)
Q Consensus 352 ~svafSpDg~~LaSgs~~~~~~~~~~s-~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (464)
-+|+|+|+|.++++--.+..+.-.... ....+-.-+..+|+..+-+.++..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g---------------------------- 530 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG---------------------------- 530 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT----------------------------
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC----------------------------
Confidence 579999999988864210000000000 012344446677887777776653
Q ss_pred ccccccCEEEEEEcCCCCEEEEe
Q 012410 431 VGEALEDITSLFYDEERNEIYTG 453 (464)
Q Consensus 431 ~~~~l~~V~slafspDg~~LaSg 453 (464)
..++.++|+||+++|...
T Consensus 531 -----aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 531 -----CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp -----CEEEEEEECTTSSEEEEE
T ss_pred -----ccCcCeeECCCCCEEEEE
Confidence 178999999999999865
No 339
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=68.05 E-value=17 Score=39.27 Aligned_cols=71 Identities=10% Similarity=0.126 Sum_probs=43.8
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccC-CCCeEEEEeCCCCeEEEEEccCCCCCCcccccCCCCCCccccccccccccc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEG-SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 429 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s-~DgtIklWdi~tG~cl~tl~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (464)
-+.|+|.++|.+.++-..+...+....+ ....|-..+..+|+....+.+...
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~--------------------------- 530 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG--------------------------- 530 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT---------------------------
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC---------------------------
Confidence 5789999999999853211000000000 122455667777887666644321
Q ss_pred cccccccCEEEEEEcCCCCEEEEee
Q 012410 430 TVGEALEDITSLFYDEERNEIYTGN 454 (464)
Q Consensus 430 ~~~~~l~~V~slafspDg~~LaSgs 454 (464)
..++.++||||+++|+.+-
T Consensus 531 ------aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 531 ------CEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp ------CEEEEEEECTTSSEEEEEE
T ss_pred ------ccccCCEECCCCCEEEEEE
Confidence 1678999999999998764
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=67.81 E-value=1.3e+02 Score=31.83 Aligned_cols=120 Identities=16% Similarity=0.248 Sum_probs=79.0
Q ss_pred CeEEE-EeCCCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEeCCeEEEEeCCC--ceEEEeccCCCCcCCCC
Q 012410 274 EKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG--ELVTSFEDHLLWHPDCN 350 (464)
Q Consensus 274 ~~lla-~s~D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~sD~TIklWd~~G--e~l~tl~gH~~~~~~~~ 350 (464)
.++++ .. ..+++|+|+.+.+.++...=... |.=--|-.+. .|+=-.+..|--|++.| +.++.|+-|..- .+|.
T Consensus 77 ~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~-~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L-~~~Q 152 (494)
T 1bpo_A 77 SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLN-TVALVTDNAVYHWSMEGESQPVKMFDRHSSL-AGCQ 152 (494)
T ss_dssp SSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETT-EEEEECSSEEEEEESSSSCCCEEEEECCGGG-TTCE
T ss_pred CcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCC-eEEEEcCCeeEEecccCCCCchhheecchhc-ccce
Confidence 45555 44 78999999999998876442221 2111222222 23333467899999954 689999999875 3577
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
|-+-..++|+++++-.+-+..+. .-.|.+-|+.++.+. -+.|.||..
T Consensus 153 IInY~~d~~~kW~~l~GI~~~~~----~v~G~mQLYS~er~~-sQ~ieGhaa 199 (494)
T 1bpo_A 153 IINYRTDAKQKWLLLTGISAQQN----RVVGAMQLYSVDRKV-SQPIEGHAA 199 (494)
T ss_dssp EEEEEECTTSSEEEEEEEEEETT----EEEEEEEEEESTTCC-EEEECCSEE
T ss_pred EEEEEECCCCCeEEEEeecccCC----cccceEEEeeccccc-cchheeeee
Confidence 77888899999988665422111 125889999986544 456777764
No 341
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=62.91 E-value=95 Score=28.61 Aligned_cols=111 Identities=13% Similarity=0.015 Sum_probs=58.1
Q ss_pred CeEEE-EeCC-----CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC-------eEEEEeCCCceEEEe
Q 012410 274 EKLLV-KQEN-----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-------TVAVWNFRGELVTSF 339 (464)
Q Consensus 274 ~~lla-~s~D-----~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~-------TIklWd~~Ge~l~tl 339 (464)
++|.+ |+.+ ..+.++|+.+.+-.+.-.-....-...+...++++++-|+ ++ .+-++|........+
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 188 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC
Confidence 44444 6644 3577899999886654221111101111224788888876 32 478888853333333
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
..-.. +...-..+. -++++++-|+.... ..-..+-++|+.+++-.
T Consensus 189 ~~~p~--~r~~~~~~~--~~~~iyv~GG~~~~------~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 189 AEMST--RRSGAGVGV--LNNLLYAVGGHDGP------LVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp CCCSS--CCBSCEEEE--ETTEEEEECCBSSS------SBCCCEEEEETTTTEEE
T ss_pred CCCcc--ccccccEEE--ECCEEEEECCCCCC------cccceEEEEeCCCCCEe
Confidence 22111 111111222 37888888875210 01246889999887643
No 342
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=60.33 E-value=1.1e+02 Score=28.32 Aligned_cols=110 Identities=9% Similarity=0.028 Sum_probs=58.6
Q ss_pred CeEEE-EeCC------CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C---------CeEEEEeCCCceE
Q 012410 274 EKLLV-KQEN------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---------RTVAVWNFRGELV 336 (464)
Q Consensus 274 ~~lla-~s~D------~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D---------~TIklWd~~Ge~l 336 (464)
++|.+ |+.+ ..+.++|..+.+-.+.-.-....-...+...++++++.|+ + ..+.++|......
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 45544 6544 5688999999886654221111111111234888888876 3 3478889854444
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 337 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 337 ~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
..+..-.... ..-..+.+ ++++++-|+.... ..-..|.++|+.+++-
T Consensus 182 ~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~------~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 182 TELCPMIEAR--KNHGLVFV--KDKIFAVGGQNGL------GGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EEECCCSSCC--BSCEEEEE--TTEEEEECCEETT------EEBCCEEEEETTTTEE
T ss_pred EECCCccchh--hcceEEEE--CCEEEEEeCCCCC------CCCceEEEeeCCCCcE
Confidence 4444222111 11112222 7788888765211 0125688899887653
No 343
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=59.08 E-value=1.3e+02 Score=29.09 Aligned_cols=52 Identities=12% Similarity=-0.042 Sum_probs=29.3
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEc--ccCCCceEEEEEcC--CCcEEEEEeCC
Q 012410 273 NEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLY--ENQLFLTFRNR 324 (464)
Q Consensus 273 ~~~lla~s~D~tIkIWDv~tg~~l~~l--~gh~~~v~sv~Fsp--dgqllaS~sD~ 324 (464)
.+.|.++...+.+++-+-..|+.-+.. .-....|.++++.| ++.++|.+..+
T Consensus 22 ~g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 22 PVMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CCEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CCEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 467888777764444332223221111 11124689999998 78888877654
No 344
>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A*
Probab=58.86 E-value=70 Score=33.42 Aligned_cols=107 Identities=10% Similarity=0.051 Sum_probs=65.6
Q ss_pred eCCCeEEEEECCCCcEEEEcccCC-CceEEEEEcCC----CcEEEEEe-CCeEEEEeC-CCceEEEeccCCCCcCCCC--
Q 012410 280 QENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYE----NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCN-- 350 (464)
Q Consensus 280 s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~Fspd----gqllaS~s-D~TIklWd~-~Ge~l~tl~gH~~~~~~~~-- 350 (464)
..+++.+|-++.+|+|+.+..+-. +...-..+..+ .+..+... +++.+|=+. +|+||..-.+...- ...
T Consensus 358 ~~~~~y~i~n~~sg~cLdv~~~~~~~G~~v~~~~c~g~~~Q~W~~~~~g~g~y~i~n~~sg~cLdv~~~~~~~--G~~v~ 435 (526)
T 3vsf_A 358 PDTTRYKLVNKNSGKVLDVLDGSVDNAAQIVQWTDNGSLSQQWYLVDVGGGYKKIVNVKSGRALDVKDESKED--GGVLI 435 (526)
T ss_dssp SCCCCEEEEETTTCCEEEEGGGCCSTTEEEEEECCCCCGGGCEEEEECSTTEEEEEESSSCCEEEEGGGCCST--TEEEE
T ss_pred CCCccEEEEECCCCceEEecCCCCCCCcEEEEccCCCCcceEEEEEECCCCEEEEEECCCCCEEEeCCCCCCC--CCEEE
Confidence 367899999999999999865432 22222234332 23444444 889999998 69998754432210 000
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEcc
Q 012410 351 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 399 (464)
Q Consensus 351 v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 399 (464)
.+...=+++++..+.... +|..+|-+..+|+||..-.+
T Consensus 436 ~~~c~g~~nQ~W~~~~~g-----------~g~y~i~~~~sg~cLdv~~~ 473 (526)
T 3vsf_A 436 QYTSNGGYNQHWKFTDIG-----------DGYYKISSRHCGKLIDVRKW 473 (526)
T ss_dssp EECCCCCGGGCEEEEEEE-----------TTEEEEEESSSCCEEEEGGG
T ss_pred EecCCCCcccEEEEEECC-----------CCeEEEEECCCCCEEEeCCC
Confidence 111111345666555432 79999999999999986443
No 345
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=57.43 E-value=39 Score=36.42 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=46.3
Q ss_pred CCceEEEEEcCCCcEEEEEe-CC------------eEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 303 FMTPSAFIFLYENQLFLTFR-NR------------TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~s-D~------------TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+..|--++|+|+|.|++.-. +. .+-+-+. +|++.+-+.++. +|-+..++|||||++|...-.
T Consensus 475 f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~----gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI----GCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT----TCEEEEEEECTTSSEEEEEEE
T ss_pred ccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC----CccCcCeeECCCCCEEEEEEE
Confidence 34678899999999888754 31 2333345 599888888874 356889999999999987654
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=56.94 E-value=1.4e+02 Score=28.66 Aligned_cols=187 Identities=9% Similarity=0.081 Sum_probs=100.3
Q ss_pred EEEEeeCCCEEEEEEeecC----CCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEec--CC
Q 012410 134 SLFYNKNNDSLITVSVYAS----DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA--QD 207 (464)
Q Consensus 134 Sv~fs~~g~~l~svSa~~s----ddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs--~D 207 (464)
.-+++++|+.|.=++.-.. ..|+....+.++..++..++. ..+... + ..+|+ |+|+.|+... .+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~----~~l~~~----~-~~~~s-~~g~~Iy~~~~~~~ 126 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS----TVLDPD----P-CIYAS-LIGNYIYYLHYDTQ 126 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC----EEEECS----C-EEEEE-EETTEEEEEEESSS
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc----eEeecC----C-ccEEE-EeCCEEEEEeecCC
Confidence 3577999999887542110 112222235566666555442 222221 1 34676 7899999876 34
Q ss_pred CcEEEEeCC-CCeEEEEecCCCE-------eEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEE
Q 012410 208 SIYKVFDLK-NYTMLYSISDKHV-------QEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 279 (464)
Q Consensus 208 ~tiKlWdl~-tg~~l~tl~~~~V-------~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~ 279 (464)
+.-+|+-+. +|.-...|..+.+ ..|-|.......|..-++..+.....+++ ... ..++| .++.|.-.
T Consensus 127 ~~~~Iy~~~~dGs~~~~lt~~~~~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P-~g~~iy~t 201 (302)
T 3s25_A 127 TATSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVL-DDTNVYYM 201 (302)
T ss_dssp SCEEEEEEETTSCCCEEEESSCCCCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEE-ETTEEEEE
T ss_pred CCceEEEEECCCCCeEEEeCCCceEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeee-cCCEEEEE
Confidence 444555443 3444444443322 22333334456788888876654433332 122 23556 46666655
Q ss_pred eC-C-CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe---CCeEEEEeCCCceEEEec
Q 012410 280 QE-N-ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFE 340 (464)
Q Consensus 280 s~-D-~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s---D~TIklWd~~Ge~l~tl~ 340 (464)
.. + ..|..=++..++ .++|.... .+ .|+|+|+.|.-++ ...|..=+++|.-.+.|.
T Consensus 202 ~~~~~~~I~~~~ldG~~-~~~Lt~~~-~~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~ 262 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPN-PVVLTEAN-IE---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELA 262 (302)
T ss_dssp EGGGTTEEEEECSSSCC-CEECSCSC-EE---EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEE
T ss_pred EcCCCcEEEEEECCCCC-eEEEeCCC-cc---eEEECCCEEEEEECCCCcEEEEEECCCCccEEee
Confidence 42 2 466666766665 44444332 22 3888998887553 346666667776555554
No 347
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=56.60 E-value=23 Score=33.36 Aligned_cols=85 Identities=12% Similarity=0.138 Sum_probs=57.1
Q ss_pred EEEEeCCCCeEE--EEec------CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCC--C--eEE
Q 012410 210 YKVFDLKNYTML--YSIS------DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN--E--KLL 277 (464)
Q Consensus 210 iKlWdl~tg~~l--~tl~------~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~--~--~ll 277 (464)
+.||.+.-|.-+ |++- +..+|.+.+. ..+++|++=+..||+||..... .+ +......+ + .-+
T Consensus 71 lt~Wa~~~~nw~wgY~~~ds~~FG~~r~W~i~~~-~p~G~VqFvN~~TgtCL~ay~n---Gv--v~~~C~~s~~~Q~wsi 144 (206)
T 1sr4_A 71 LTVWALAKRNWLWAYPNIYSQDFGNIRNWKMEPG-KHREYFRFVNQSLGTCVEAYGN---GL--IHDICSLDKLAQEFEL 144 (206)
T ss_dssp EEECSCSTTCBEEEEEGGGCGGGGGGGCEEEEEC-SSTTCEEEEETTTCCEEEEETT---EE--EEECCCTTCGGGCEEE
T ss_pred EEEEecCCCcceeeecccccCCcCCcceeEEEee-cCCCEEEEEECCCCceeeeccC---Ce--EEecCCCCCcccEEEE
Confidence 469999888866 5543 3568888632 4578899999999999998541 11 22222111 1 223
Q ss_pred EEeCCCeEEEEECCCCcEEEEcc
Q 012410 278 VKQENENLQILDVRNAELMEVSR 300 (464)
Q Consensus 278 a~s~D~tIkIWDv~tg~~l~~l~ 300 (464)
.-..++.++|=++.+|+|+.+..
T Consensus 145 iPttnGAVQIKnvatg~CL~t~~ 167 (206)
T 1sr4_A 145 LPTDSGAVVIKSVSQGRCVTYNP 167 (206)
T ss_dssp EEBTTSCEEEEETTTCCEEEECS
T ss_pred ecCCCccEEEEECCCCccCCccC
Confidence 34567889999999999999854
No 348
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=56.39 E-value=1.2e+02 Score=27.82 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=94.8
Q ss_pred CCcEEEEecCC-----CcEEEEeCCCCeEEE--EecCC--CEeEEEEe----------C-CCceeEEEEEcCCCcEEEEE
Q 012410 197 NGKVLTYSAQD-----SIYKVFDLKNYTMLY--SISDK--HVQEIKIR----------S-SSHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 197 dGk~LaSgs~D-----~tiKlWdl~tg~~l~--tl~~~--~V~~Vafs----------~-s~d~tIklWdi~tG~~l~tl 256 (464)
++++++.|+.+ ..+-++|..+.+-.. .+... ....+.+. . ..-..+.++|+++++-...-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 67888888754 357788887766432 12211 11111111 0 11245778888877644321
Q ss_pred eeCCcce-eeEEEEccCCCeEEE-EeC-------CCeEEEEECCCCcEEEEcc--cCCCceEEEEEcCCCcEEEEEe-CC
Q 012410 257 YHLLHRN-KKVDFIEQFNEKLLV-KQE-------NENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-NR 324 (464)
Q Consensus 257 ~~~~~~~-~~V~F~~~~~~~lla-~s~-------D~tIkIWDv~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~s-D~ 324 (464)
.-...+. ..++.. +++|.+ |+. -..+.++|+.+.+-.+.-. ..-....++ ..++++++.|+ ++
T Consensus 141 ~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~ 215 (302)
T 2xn4_A 141 PMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDG 215 (302)
T ss_dssp CCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSS
T ss_pred CCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCC
Confidence 1111222 223322 355555 553 2458899999988665421 111111222 34788888887 53
Q ss_pred -----eEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 325 -----TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 325 -----TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.|.++|........+........ .- ++ ..-++++++-|+.... ..-..|-++|+.+.+-
T Consensus 216 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~--~~-~~-~~~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWRQVADMNMCRR--NA-GV-CAVNGLLYVVGGDDGS------CNLASVEYYNPTTDKW 279 (302)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCB--SC-EE-EEETTEEEEECCBCSS------SBCCCEEEEETTTTEE
T ss_pred CcccceEEEEeCCCCCEeeCCCCCCccc--cC-eE-EEECCEEEEECCcCCC------cccccEEEEcCCCCeE
Confidence 68889985444445543222111 11 12 2237888888775210 0124689999987764
No 349
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.11 E-value=52 Score=35.56 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=44.6
Q ss_pred CCceEEEEEcCCCcEEEEEe-C------------CeEEEEeC-CCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 012410 303 FMTPSAFIFLYENQLFLTFR-N------------RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 368 (464)
Q Consensus 303 ~~~v~sv~FspdgqllaS~s-D------------~TIklWd~-~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~ 368 (464)
+..|..++|.++|.+.++.. . ..|-..+. +|++..-+.+... |.++.++||||+++|...-.
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~----aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----CEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTT----CEEEEEEECTTSSEEEEEEE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCC----ccccCCEECCCCCEEEEEEe
Confidence 56789999999999988432 1 13444566 5887776655432 34789999999999987654
No 350
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=51.72 E-value=15 Score=40.77 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=25.7
Q ss_pred CCCcEEEEecCCCcEEEEeCCCCeEEEEec
Q 012410 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (464)
Q Consensus 196 pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~ 225 (464)
.+..+|.+=+.|+++|+||+++++|+.+..
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 356788899999999999999999987654
No 351
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=48.82 E-value=2.3e+02 Score=28.67 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.9
Q ss_pred CCCeEEEEECCCCcEEEEcc
Q 012410 281 ENENLQILDVRNAELMEVSR 300 (464)
Q Consensus 281 ~D~tIkIWDv~tg~~l~~l~ 300 (464)
.+.-|-++|+.+|+-.+++.
T Consensus 179 ~~~gLIVydl~~~~swRv~~ 198 (381)
T 3q6k_A 179 LRGALFIYDHKKQDSWNVTH 198 (381)
T ss_dssp TTTEEEEEETTTTEEEEEEC
T ss_pred CCCcEEEEECCCCcEEEEcc
Confidence 46788899999999988874
No 352
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=46.07 E-value=3.3e+02 Score=29.72 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=47.7
Q ss_pred cceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccC-------CCceEEEEEcCC--CcEEEEEeCCe----EE
Q 012410 261 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYE--NQLFLTFRNRT----VA 327 (464)
Q Consensus 261 ~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh-------~~~v~sv~Fspd--gqllaS~sD~T----Ik 327 (464)
.++..|+|.|.+.+.++++...+.|...+ ..|+.-+.+..+ ...+.++++.|. +.+++...+.. -.
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 57788888886667888887777776665 456654443332 246899999984 34455443322 34
Q ss_pred EEeC-C-CceEEEe
Q 012410 328 VWNF-R-GELVTSF 339 (464)
Q Consensus 328 lWd~-~-Ge~l~tl 339 (464)
||-. + |+--+.+
T Consensus 94 v~~S~DgG~TW~~~ 107 (789)
T 1sqj_A 94 FYVSEDRGQSFTIY 107 (789)
T ss_dssp EEEESSTTSEEEEE
T ss_pred EEEECCCCCcceec
Confidence 5554 3 6654443
No 353
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=44.15 E-value=2e+02 Score=26.63 Aligned_cols=100 Identities=5% Similarity=-0.052 Sum_probs=55.4
Q ss_pred CeEEEEECCCCcEEEEcccC--CCceEEEEEcCCCcEEEEEe-C-----CeEEEEeCCCceEEEeccCCCCcCCCCeeEE
Q 012410 283 ENLQILDVRNAELMEVSRTE--FMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 354 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh--~~~v~sv~FspdgqllaS~s-D-----~TIklWd~~Ge~l~tl~gH~~~~~~~~v~sv 354 (464)
..+.++|+.+.+-.+.-.-. -....++. .++++++-|+ + ..+-++|........+..-.. +.+.-..+
T Consensus 137 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~ 212 (308)
T 1zgk_A 137 NSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT--IRSGAGVC 212 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEE
T ss_pred ccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC--ccccceEE
Confidence 46889999988766542111 11112222 3788888877 5 358888885444444432111 11111223
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 355 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 355 afSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
.+ ++++++-|+.... ..-..+-++|+.+++..
T Consensus 213 ~~--~~~iyv~GG~~~~------~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 213 VL--HNCIYAAGGYDGQ------DQLNSVERYDVETETWT 244 (308)
T ss_dssp EE--TTEEEEECCBCSS------SBCCCEEEEETTTTEEE
T ss_pred EE--CCEEEEEeCCCCC------CccceEEEEeCCCCcEE
Confidence 33 7888888765210 01356889999887643
No 354
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=44.04 E-value=64 Score=30.27 Aligned_cols=85 Identities=8% Similarity=-0.024 Sum_probs=49.1
Q ss_pred eeEEEEEeccCCCCCcccceeeccccC--ceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEEecC------------
Q 012410 161 RSTKIEYIRRGKPDSGFALFESESLKW--PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------------ 226 (464)
Q Consensus 161 ~ti~l~~i~~G~~~~~~~l~~~~~~~~--~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~tl~~------------ 226 (464)
-.+.+|.+..|..+=+..++.+..++- ...+.+ .-.+++|++=+.++|+||.....
T Consensus 69 ~~lt~Wa~~~~nw~wgY~~~ds~~FG~~r~W~i~~----------~~p~G~VqFvN~~TgtCL~ay~nGvv~~~C~~s~~ 138 (206)
T 1sr4_A 69 ALLTVWALAKRNWLWAYPNIYSQDFGNIRNWKMEP----------GKHREYFRFVNQSLGTCVEAYGNGLIHDICSLDKL 138 (206)
T ss_dssp EEEEECSCSTTCBEEEEEGGGCGGGGGGGCEEEEE----------CSSTTCEEEEETTTCCEEEEETTEEEEECCCTTCG
T ss_pred CEEEEEecCCCcceeeecccccCCcCCcceeEEEe----------ecCCCEEEEEECCCCceeeeccCCeEEecCCCCCc
Confidence 556678877766543333333222210 011221 34566788888889999876431
Q ss_pred CCEeEEEEeCCCceeEEEEEcCCCcEEEEEe
Q 012410 227 KHVQEIKIRSSSHVPLKILSIEDGTVLKVFY 257 (464)
Q Consensus 227 ~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~ 257 (464)
..+|.+.. ...+.|.|=++.+|+||.++.
T Consensus 139 ~Q~wsiiP--ttnGAVQIKnvatg~CL~t~~ 167 (206)
T 1sr4_A 139 AQEFELLP--TDSGAVVIKSVSQGRCVTYNP 167 (206)
T ss_dssp GGCEEEEE--BTTSCEEEEETTTCCEEEECS
T ss_pred ccEEEEec--CCCccEEEEECCCCccCCccC
Confidence 12344433 344556666999999999865
No 355
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=43.98 E-value=1.9e+02 Score=26.40 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=59.4
Q ss_pred CeEEE-EeCC-----CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C-----CeEEEEeCCCceEEEecc
Q 012410 274 EKLLV-KQEN-----ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFRGELVTSFED 341 (464)
Q Consensus 274 ~~lla-~s~D-----~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D-----~TIklWd~~Ge~l~tl~g 341 (464)
++|.+ |+.+ ..+.++|+.+++-.+.-.-........+...++++++.|+ + ..|.++|........+..
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC
Confidence 45544 5543 5688999999886654211111111112234788888887 5 368899985444444432
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 342 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 342 H~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
-.. +.+.-..+. -++++++-|+.... ..-..|-++|+.+++.
T Consensus 240 ~p~--~r~~~~~~~--~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 240 MTT--PRCYVGATV--LRGRLYAIAGYDGN------SLLSSIECYDPIIDSW 281 (301)
T ss_dssp CSS--CCBSCEEEE--ETTEEEEECCBCSS------SBEEEEEEEETTTTEE
T ss_pred CCC--cccceeEEE--ECCEEEEEcCcCCC------cccccEEEEcCCCCeE
Confidence 111 111112233 37788888764110 0115688899887764
No 356
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=39.39 E-value=3.7e+02 Score=28.46 Aligned_cols=250 Identities=8% Similarity=-0.023 Sum_probs=132.5
Q ss_pred ccceEEEEec-cceeehhccCCeEEeeecccccEeeEee---cCCCceEEEEEEeeCCCEEEEEEeecCCCCcccceeeE
Q 012410 88 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLN---VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (464)
Q Consensus 88 ~s~v~~~~~a-g~~l~~l~~~g~~~~~~~~~g~~l~~ln---~~~~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti 163 (464)
...|..|+.. ...|=.+..+|+.+. | |.....+. ......|.+++-.++|...+. +.+ -+
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~GL~ry-D---G~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-----T~~-------Gl 84 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKGLFSY-D---GYSTQQHFTYGENNNTRIYCGVIIDNTYLYMG-----TDN-------GI 84 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSCEEEE-C---SSCEEECSCTTSTTSSCEEEEEEETTTEEEEE-----ETT-------EE
T ss_pred cceEEEEEECCCCCEEEEECCCcccc-C---CCceEEEEccCCCCCceEEEEEEcCCCcEEEE-----eCC-------Ce
Confidence 3457777765 233334557787764 2 32222111 112356899888888865554 122 23
Q ss_pred EEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCCcEEEEeCCCCeEEEE------ecCCCEeEEEEeCC
Q 012410 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS------ISDKHVQEIKIRSS 237 (464)
Q Consensus 164 ~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~tiKlWdl~tg~~l~t------l~~~~V~~Vafs~s 237 (464)
...|..+++........ ...+..++. .+|.+.+ |+.+ -+-.+|.++++...- +....|.++....+
T Consensus 85 ~~yd~~~~~f~~~~~~~----~~~i~~i~~--~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~ 156 (758)
T 3ott_A 85 LVYNYRADRYEQPETDF----PTDVRTMAL--QGDTLWL-GALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKD 156 (758)
T ss_dssp EEEETTTTEECCCSCCC----CSCEEEEEE--ETTEEEE-EETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTT
T ss_pred EEEeCCCCEEECcccCC----CceEEEEEe--cCCcEEE-EcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCC
Confidence 44555554432100000 112224443 3776665 4445 466778877665422 22456777776432
Q ss_pred ------CceeEEEEEcCCCcEEEEEeeC------CcceeeEEEEccCCCeEEEEeCCCeEEEEECCCCcEEEEcccCCCc
Q 012410 238 ------SHVPLKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 305 (464)
Q Consensus 238 ------~d~tIklWdi~tG~~l~tl~~~------~~~~~~V~F~~~~~~~lla~s~D~tIkIWDv~tg~~l~~l~gh~~~ 305 (464)
.+.-|-.++.++++.. .+... ...+.++...+ .++.|.++.. +-|..+|..+++......-....
T Consensus 157 g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~ 233 (758)
T 3ott_A 157 NQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNS 233 (758)
T ss_dssp CCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEE
T ss_pred CCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCe
Confidence 1123666777766532 22211 01245554333 2355677664 45778998887654321112245
Q ss_pred eEEEEEcCCCcEEEEEeCCeEEEEeCC-CceEEEeccCC---CCcCCCCeeEEEECCCCCEEEEE
Q 012410 306 PSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHL---LWHPDCNTNNIYITSDQDLIISY 366 (464)
Q Consensus 306 v~sv~FspdgqllaS~sD~TIklWd~~-Ge~l~tl~gH~---~~~~~~~v~svafSpDg~~LaSg 366 (464)
|.++...++|.+.+.. ++-+-++|.. ++. +.+.... ...++-.|++++...+|.+-+..
T Consensus 234 i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 234 IKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp EEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred EEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 7888888899988765 3457788874 444 3332111 11122248899998888887754
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=38.63 E-value=4.2e+02 Score=28.81 Aligned_cols=181 Identities=13% Similarity=0.091 Sum_probs=92.9
Q ss_pred EEEeCCCCcEEEEe-----cCCCcEEEEeCCCCeEEE-Eec-C--C-CEeEEEEe-----------------C------C
Q 012410 191 VEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLY-SIS-D--K-HVQEIKIR-----------------S------S 237 (464)
Q Consensus 191 VaFs~pdGk~LaSg-----s~D~tiKlWdl~tg~~l~-tl~-~--~-~V~~Vafs-----------------~------s 237 (464)
..|+ |||+.++.+ |.-.+++++|++|++.+. .+. . . .+..++|+ | .
T Consensus 135 ~~~~-~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 135 SNCF-QNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSL 213 (711)
T ss_dssp EECS-SSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTS
T ss_pred eecC-CCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCC
Confidence 3375 899887764 445689999999999873 222 0 0 01112221 1 0
Q ss_pred CceeEEEEEcCCCc--EEEEEeeCCcce-eeEEEEccCCCe----EEEE-e---CCCeEEEEECCC--CcEEEEcccCCC
Q 012410 238 SHVPLKILSIEDGT--VLKVFYHLLHRN-KKVDFIEQFNEK----LLVK-Q---ENENLQILDVRN--AELMEVSRTEFM 304 (464)
Q Consensus 238 ~d~tIklWdi~tG~--~l~tl~~~~~~~-~~V~F~~~~~~~----lla~-s---~D~tIkIWDv~t--g~~l~~l~gh~~ 304 (464)
.-..|+.|-+-|.. -...|....... -++..++ +++. ++++ + ....+.+.|... ++..+......
T Consensus 214 ~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 291 (711)
T 4hvt_A 214 YPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD- 291 (711)
T ss_dssp SBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT-
T ss_pred CCCEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc-
Confidence 22568888774331 112344221222 2222223 3332 3443 3 223455566543 66555433222
Q ss_pred ceEEEEEcCCCcEEEEEe-----------CCeEEEEeC-CC-------ceEEE-eccCCCCcCCCCeeEEEECCCCCEEE
Q 012410 305 TPSAFIFLYENQLFLTFR-----------NRTVAVWNF-RG-------ELVTS-FEDHLLWHPDCNTNNIYITSDQDLII 364 (464)
Q Consensus 305 ~v~sv~FspdgqllaS~s-----------D~TIklWd~-~G-------e~l~t-l~gH~~~~~~~~v~svafSpDg~~La 364 (464)
..++.++++++++... .+.|-+.|+ ++ +-.++ +..... ..+.++.++.| .+++
T Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 292 --ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN----EVFNFISTTKD-RVFL 364 (711)
T ss_dssp --CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT----EEEEEEEECSS-CEEE
T ss_pred --ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC----CeEEEEEEECC-EEEE
Confidence 1234567888877442 345666666 32 12233 322222 23778888876 6777
Q ss_pred EEecCCCccccccCCCC--eEEEEeCCCCe
Q 012410 365 SYCKAEPEDQWMEGSAG--SINVSSILTGK 392 (464)
Q Consensus 365 Sgs~~~~~~~~~~s~Dg--tIklWdi~tG~ 392 (464)
++.. ++ .|.++|+.+|+
T Consensus 365 ~~~~-----------~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 365 ATYD-----------NVVAKVVTFTLENEQ 383 (711)
T ss_dssp EEEE-----------TTEEEEEEECEETTE
T ss_pred EEEE-----------CCEEEEEEEECCCCc
Confidence 7765 44 46777876775
No 358
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding, carbohydrate-binding, sugar-binding, sugar binding protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades} PDB: 2iho_A*
Probab=38.46 E-value=2.9e+02 Score=26.94 Aligned_cols=105 Identities=9% Similarity=0.020 Sum_probs=54.9
Q ss_pred CCeEEEEECCCCcEEEEcccCCC-ceEEEEEc-------CCCcEEEEE---eCCeEEEEeC-CCceEEEeccCCCCcCCC
Q 012410 282 NENLQILDVRNAELMEVSRTEFM-TPSAFIFL-------YENQLFLTF---RNRTVAVWNF-RGELVTSFEDHLLWHPDC 349 (464)
Q Consensus 282 D~tIkIWDv~tg~~l~~l~gh~~-~v~sv~Fs-------pdgqllaS~---sD~TIklWd~-~Ge~l~tl~gH~~~~~~~ 349 (464)
|++-+|=++.+|+|+.+-.+.+. .-.-..+. +.-+..+.. ++++.+|=+. +|+||-.-.+-..- .
T Consensus 5 ~G~Y~I~N~~SGk~LDV~g~stanGa~Vqqw~~~g~ng~~nQqW~~~~~~G~~G~Y~I~n~~SGkcLDV~~~stan--G- 81 (293)
T 3ef2_A 5 RGIYHIENAGVPSAIDLKDGSSSDGTPIVGWQFTPDTINWHQLWLAEPIPNVADTFTLCNLFSGTYMDLYNGSSEA--G- 81 (293)
T ss_dssp SEEEEEEESSSSCEEEEGGGCCSTTEEEEEECCCTTSCCTTCEEEEEECTTSTTEEEEEETTTCCEEEEGGGCCST--T-
T ss_pred CcEEEEEECCCCCEEEcCCCCCCCCcEEEEeecCCCCCCccEEEEEeeccCCCceEEEEECCCCCEEecCCCCCCC--C-
Confidence 45666666677777766533221 11122233 122233333 3678888887 68887644322110 0
Q ss_pred CeeEEEEC-------CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccC
Q 012410 350 NTNNIYIT-------SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 400 (464)
Q Consensus 350 ~v~svafS-------pDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh 400 (464)
..-+-++ ++++..+... +.+|+.+|-+..+|+||-.-.+.
T Consensus 82 -t~V~qw~~~~~~~g~nQqW~l~~~----------~g~G~y~I~n~~SGk~LDV~g~s 128 (293)
T 3ef2_A 82 -TAVNGWQGTAFTTNPHQLWTIKKS----------SDGTSYKIQNYGSKTFVDLVNGD 128 (293)
T ss_dssp -EEEEEECCCTTCCCGGGCEEEEEC----------TTSSSEEEEETTTCCEEEEGGGC
T ss_pred -CEEEEeccCCCCCCCCcEEEEEEe----------CCCCEEEEEECCCCcEEEeCCCC
Confidence 1112222 2444544432 12578999999999999765443
No 359
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=36.56 E-value=2.5e+02 Score=25.67 Aligned_cols=185 Identities=9% Similarity=0.008 Sum_probs=96.9
Q ss_pred CCcEEEEecCC----CcEEEEeCCCCeEEE--EecCC--CEeEEEEeC------------CCceeEEEEEcCCCcEEEEE
Q 012410 197 NGKVLTYSAQD----SIYKVFDLKNYTMLY--SISDK--HVQEIKIRS------------SSHVPLKILSIEDGTVLKVF 256 (464)
Q Consensus 197 dGk~LaSgs~D----~tiKlWdl~tg~~l~--tl~~~--~V~~Vafs~------------s~d~tIklWdi~tG~~l~tl 256 (464)
++++++.|+.+ ..+-++|+.+.+-.. .++.. .-..+.+.. .....+.++|.++++-...-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 67888888765 567788888876432 22211 111111110 12246888899887644321
Q ss_pred eeCCcce-eeEEEEccCCCeEEE-EeC---------CCeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C-
Q 012410 257 YHLLHRN-KKVDFIEQFNEKLLV-KQE---------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N- 323 (464)
Q Consensus 257 ~~~~~~~-~~V~F~~~~~~~lla-~s~---------D~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D- 323 (464)
.-...+. ..++.. +++|.+ |+. -..+.++|+.+.+-.+.-.-....-...+...++++++-|+ +
T Consensus 135 ~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 211 (306)
T 3ii7_A 135 SMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG 211 (306)
T ss_dssp CCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred CCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCC
Confidence 1111222 222222 355555 542 34588999999876654221111111112233888888876 4
Q ss_pred ----CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 324 ----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 324 ----~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
..|.++|........+..-... ......+.+ ++++++-|+.... +.-..|.++|+.+.+-.
T Consensus 212 ~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~--~~~i~v~GG~~~~------~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 212 LGGLDNVEYYDIKLNEWKMVSPMPWK--GVTVKCAAV--GSIVYVLAGFQGV------GRLGHILEYNTETDKWV 276 (306)
T ss_dssp TEEBCCEEEEETTTTEEEECCCCSCC--BSCCEEEEE--TTEEEEEECBCSS------SBCCEEEEEETTTTEEE
T ss_pred CCCCceEEEeeCCCCcEEECCCCCCC--ccceeEEEE--CCEEEEEeCcCCC------eeeeeEEEEcCCCCeEE
Confidence 3678889854444444322111 111223333 7888888875211 11357889999887643
No 360
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=35.88 E-value=2.7e+02 Score=25.75 Aligned_cols=102 Identities=11% Similarity=0.075 Sum_probs=54.1
Q ss_pred CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-C------CeEEEEeCCCceEEEeccCCCCcCCCCeeEEE
Q 012410 283 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIY 355 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D------~TIklWd~~Ge~l~tl~gH~~~~~~~~v~sva 355 (464)
..+.++|..+++-.+.-.-....-...+...++++++-|+ + ..+.++|........+..-.. +...-..+
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~- 193 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT--ARSLFGAT- 193 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEE-
T ss_pred ceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC--chhceEEE-
Confidence 5688999999876553211111111112236788888876 2 368888985443443432111 11111122
Q ss_pred ECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 356 ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 356 fSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
.-++++++.|+.... +.-..+-++|+.+++-.
T Consensus 194 -~~~~~iyv~GG~~~~------~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 194 -VHDGRIIVAAGVTDT------GLTSSAEVYSITDNKWA 225 (315)
T ss_dssp -EETTEEEEEEEECSS------SEEEEEEEEETTTTEEE
T ss_pred -EECCEEEEEeccCCC------CccceEEEEECCCCeEE
Confidence 237788888875210 01236888898877543
No 361
>3nbc_A Ricin B-like lectin; lactose, sugar BIND protein; HET: LAT; 1.01A {Clitocybe nebularis} PDB: 3nbd_A* 3nbe_A*
Probab=35.29 E-value=2.2e+02 Score=24.72 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=36.5
Q ss_pred CeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 012410 324 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 324 ~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
++.+|=++ |+||-. .++..- .. ..-+..+++++.-+... +.||..+|-...+|+||-.
T Consensus 60 g~y~i~n~-G~~Ldv-~~~~ta-~G--t~v~~~~~~q~W~i~~~----------~~~G~y~I~~~~sg~~Ldv 117 (148)
T 3nbc_A 60 YTMQAVNP-QSYVRV-RDDNLV-DG--AALVGSQQPTPVSIESA----------GNSGQFRIKIPNLGLALTL 117 (148)
T ss_dssp EEEEESSS-CCEEEE-GGGCCS-TT--CBEEEESSCCCEEEEEC----------SSTTCEEEECTTSSEEEEC
T ss_pred ceEEEEEC-CcEEEc-cCCCCC-CC--cEEecCCCCcEEEEEEc----------cCCCeEEEEeCCCCeEEEe
Confidence 77777777 888843 344221 11 22345666666655431 1278999999999999863
No 362
>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A*
Probab=34.97 E-value=4e+02 Score=27.53 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=35.8
Q ss_pred EeCCCeEEEEECCCCcEEEEcccCCCc-eEEEEEc----CCCcEEEEEe-CCeEEEEeC-CCceEEE
Q 012410 279 KQENENLQILDVRNAELMEVSRTEFMT-PSAFIFL----YENQLFLTFR-NRTVAVWNF-RGELVTS 338 (464)
Q Consensus 279 ~s~D~tIkIWDv~tg~~l~~l~gh~~~-v~sv~Fs----pdgqllaS~s-D~TIklWd~-~Ge~l~t 338 (464)
...++..+|-+..+|+||.+..+.... -.-+.+. ++.+..+... |+..+|-+. +|+||..
T Consensus 404 ~~g~g~y~i~n~~sg~cLdv~~~~~~~G~~v~~~~c~g~~nQ~W~~~~~g~g~y~i~~~~sg~cLdv 470 (526)
T 3vsf_A 404 DVGGGYKKIVNVKSGRALDVKDESKEDGGVLIQYTSNGGYNQHWKFTDIGDGYYKISSRHCGKLIDV 470 (526)
T ss_dssp ECSTTEEEEEESSSCCEEEEGGGCCSTTEEEEEECCCCCGGGCEEEEEEETTEEEEEESSSCCEEEE
T ss_pred ECCCCEEEEEECCCCCEEEeCCCCCCCCCEEEEecCCCCcccEEEEEECCCCeEEEEECCCCCEEEe
Confidence 346788999999999999876543211 1112222 2233344444 777777777 5777653
No 363
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=32.56 E-value=4.9e+02 Score=27.83 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=29.7
Q ss_pred eeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEEccCCC
Q 012410 351 TNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 402 (464)
Q Consensus 351 v~svafSp-Dg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gh~~ 402 (464)
+|+|.+-+ |+.+|+|+=. - +|-.-|- +|+.+..|-++.+
T Consensus 357 iNsv~~d~~dd~~liSsR~-----------~-~I~~Id~-tG~V~W~LGg~~~ 396 (571)
T 3elq_A 357 VNSIAYDAKDDSIILSSRH-----------Q-GVVKIGR-DKQVKWILAPSKG 396 (571)
T ss_dssp EEEEEEETTTTEEEEEETT-----------T-EEEEEET-TSCEEEEESCSTT
T ss_pred ecceeEcCCCCEEEEECCc-----------c-EEEEEcC-CCcEEEEECCCCC
Confidence 89999888 5679988643 3 4444474 9999999988875
No 364
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=31.75 E-value=1e+02 Score=37.15 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=83.8
Q ss_pred CCcEEEEeCCCCeEEE--Eec--------CCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeE
Q 012410 207 DSIYKVFDLKNYTMLY--SIS--------DKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 207 D~tiKlWdl~tg~~l~--tl~--------~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~l 276 (464)
..+|-|=|+++++... .+. ...|-+++ + ..++.|+|+++-+.++++.-... |.|-.--+...
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALr--a--g~~lQiFnl~~k~klks~~~~e~----VvfWkWis~~~ 118 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALK--A--GKTLQIFNIEMKSKMKAHTMTDD----VTFWKWISLNT 118 (1630)
T ss_pred CceEEEEECCCCCCcccccccchhhccCCCcceEEEe--c--CCeEEEeehHHhhhhcccccCCC----ceEEEecCCCe
Confidence 3478888998876542 222 12343333 2 57899999999998988774322 33322112333
Q ss_pred EEEeCCCeEEEEECCC-CcEEEEcccC----CCceEEEEEcCCCcEEEE-------Ee-CCeEEEEeCCCceEEEeccCC
Q 012410 277 LVKQENENLQILDVRN-AELMEVSRTE----FMTPSAFIFLYENQLFLT-------FR-NRTVAVWNFRGELVTSFEDHL 343 (464)
Q Consensus 277 la~s~D~tIkIWDv~t-g~~l~~l~gh----~~~v~sv~FspdgqllaS-------~s-D~TIklWd~~Ge~l~tl~gH~ 343 (464)
|+==.+..|.-|++.. .+..+.+.-| ...+....-+++.+.++- ++ .|.+.|+.++-+.-+.++||.
T Consensus 119 l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha 198 (1630)
T 1xi4_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA 198 (1630)
T ss_pred eEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhH
Confidence 3323457899999963 3455555444 235666777888888763 33 578999999878888999997
Q ss_pred CC
Q 012410 344 LW 345 (464)
Q Consensus 344 ~~ 345 (464)
.-
T Consensus 199 ~~ 200 (1630)
T 1xi4_A 199 AS 200 (1630)
T ss_pred hh
Confidence 63
No 365
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=28.83 E-value=1.8e+02 Score=23.71 Aligned_cols=79 Identities=11% Similarity=-0.022 Sum_probs=44.4
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEcccCC-CceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCee
Q 012410 274 EKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTN 352 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~~l~gh~-~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~ 352 (464)
...|.=+.||.+.|++...+..+-....+. .....+.|..||.+++...++++ +|.....+ ... ..
T Consensus 25 ~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~~~~~-iW~S~t~~------~~~------~~ 91 (113)
T 3mez_B 25 DYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDDRLNT-VFVSNTVG------QEG------DY 91 (113)
T ss_dssp TEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECTTSCE-EEECSCCC------SSS------CC
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECCCCCE-EEECCCcC------CCC------CE
Confidence 344444677777777743344443322221 12345678999999987666655 89862111 000 12
Q ss_pred EEEECCCCCEEEE
Q 012410 353 NIYITSDQDLIIS 365 (464)
Q Consensus 353 svafSpDg~~LaS 365 (464)
.+.+-+||.+.+-
T Consensus 92 ~~~L~~dGnlvly 104 (113)
T 3mez_B 92 VLILQINGQAVVY 104 (113)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEcCCceEEEe
Confidence 3567788887763
No 366
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=28.40 E-value=2.3e+02 Score=22.82 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=38.1
Q ss_pred eCCCeEEEEECCCCcEEEEcccC-CCceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCeeEEEECC
Q 012410 280 QENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 358 (464)
Q Consensus 280 s~D~tIkIWDv~tg~~l~~l~gh-~~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v~svafSp 358 (464)
+.|+++.|+| .+..+=..... ......+.+..||++++...++.+ ||... ...... -..+.+-+
T Consensus 27 ~~dGnlvl~~--~~~~vW~sn~~~~~~~~~l~l~~dGNLVl~~~~~~~-~W~S~-------t~~~~g-----~~~l~l~~ 91 (110)
T 3a0c_A 27 QGDCNFVLYD--SGKPVWASNTGGLGSGCRLTLHNNGNLVIYDQSNRV-IWQTK-------TNGKED-----HYVLVLQQ 91 (110)
T ss_dssp CTTSCEEEEE--TTEEEEECCCTTSCSSCEEEECTTSCEEEECTTCCE-EEECC-------CCCSSS-----CCEEEECT
T ss_pred cCCCcEEEEE--CCEEEEECCCCCCCCcEEEEEeCCCCEEEECCCCcE-EEecC-------CCCCCC-----CEEEEEeC
Confidence 4455666665 23333222111 112234678899999887655554 78742 121111 23577889
Q ss_pred CCCEEE
Q 012410 359 DQDLII 364 (464)
Q Consensus 359 Dg~~La 364 (464)
||.+++
T Consensus 92 dGnlvl 97 (110)
T 3a0c_A 92 DRNVVI 97 (110)
T ss_dssp TSCEEE
T ss_pred CccEEE
Confidence 998666
No 367
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=26.60 E-value=3.8e+02 Score=24.62 Aligned_cols=109 Identities=8% Similarity=-0.053 Sum_probs=60.2
Q ss_pred CeEEE-EeCC-----CeEEEEECCCCcEEEEcc--cCCCceEEEEEcCCCcEEEEEe-C-----CeEEEEeCCCceEEEe
Q 012410 274 EKLLV-KQEN-----ENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFRGELVTSF 339 (464)
Q Consensus 274 ~~lla-~s~D-----~tIkIWDv~tg~~l~~l~--gh~~~v~sv~FspdgqllaS~s-D-----~TIklWd~~Ge~l~tl 339 (464)
++|.+ |+.+ ..+.++|+.+.+-...-. ..-....++. .++++++-|+ + ..|.++|........+
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 45544 5533 468899999887655321 1111112232 3888888887 5 4688999854444444
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 012410 340 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 394 (464)
Q Consensus 340 ~gH~~~~~~~~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~cl 394 (464)
..-.. +...-..+. -++++++-|+.... ..-..|-++|+.+.+-.
T Consensus 247 ~~~p~--~r~~~~~~~--~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 247 APMKH--RRSALGITV--HQGRIYVLGGYDGH------TFLDSVECYDPDTDTWS 291 (308)
T ss_dssp CCCSS--CCBSCEEEE--ETTEEEEECCBCSS------CBCCEEEEEETTTTEEE
T ss_pred CCCCC--CccceEEEE--ECCEEEEEcCcCCC------cccceEEEEcCCCCEEe
Confidence 32111 111112222 37888888875210 11357889998887653
No 368
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=25.47 E-value=4e+02 Score=24.50 Aligned_cols=110 Identities=10% Similarity=0.005 Sum_probs=55.8
Q ss_pred CeEEEEECCCCcEEEEcccCCCceEEEEEcCCCcEEEEEe-CC-----eEEEEeCCCceEEEeccCCCCcCCCCeeEEEE
Q 012410 283 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-----TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI 356 (464)
Q Consensus 283 ~tIkIWDv~tg~~l~~l~gh~~~v~sv~FspdgqllaS~s-D~-----TIklWd~~Ge~l~tl~gH~~~~~~~~v~svaf 356 (464)
..+.++|+.+.+-.+.-.-........+...++++++.|+ ++ .+.++|........+..-.. +...-..+.
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~- 241 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ--ERSSLSLVS- 241 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS--CCBSCEEEE-
T ss_pred ceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC--cccceeEEE-
Confidence 4688999998876554221111111112234888888887 54 57888885444444443111 111112232
Q ss_pred CCCCCEEEEEecCCCc---cccccCCCCeEEEEeCCCCeEEEE
Q 012410 357 TSDQDLIISYCKAEPE---DQWMEGSAGSINVSSILTGKCLAK 396 (464)
Q Consensus 357 SpDg~~LaSgs~~~~~---~~~~~s~DgtIklWdi~tG~cl~t 396 (464)
-++++++-|+..... .......-..|-++|+.+.+-...
T Consensus 242 -~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 242 -LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp -ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred -ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 367888877651000 000000013577889888765443
No 369
>3a07_A Actinohivin; carbohydrate-binding module family 13, antiviral protein, LE; 1.19A {Actinomycete}
Probab=24.18 E-value=86 Score=25.45 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=10.6
Q ss_pred CCeEEEEeCCCCeEEEE
Q 012410 380 AGSINVSSILTGKCLAK 396 (464)
Q Consensus 380 DgtIklWdi~tG~cl~t 396 (464)
+|+|+ +..+|+||..
T Consensus 82 ~g~i~--~~~sg~cLdv 96 (118)
T 3a07_A 82 NGYIQ--NVETGRVLDS 96 (118)
T ss_dssp TSCEE--ETTTCCEEEE
T ss_pred CCEEE--ECCCCcEEEc
Confidence 66554 6778999874
No 370
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=23.34 E-value=2.7e+02 Score=22.36 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=43.7
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEcccCC--CceEEEEEcCCCcEEEEEeCCeEEEEeCCCceEEEeccCCCCcCCCCe
Q 012410 274 EKLLVKQENENLQILDVRNAELMEVSRTEF--MTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNT 351 (464)
Q Consensus 274 ~~lla~s~D~tIkIWDv~tg~~l~~l~gh~--~~v~sv~FspdgqllaS~sD~TIklWd~~Ge~l~tl~gH~~~~~~~~v 351 (464)
.+.|+=+.|+++-||+ .+..+-.-..+. .....+.|..||++++...++++ ||...-. +... -
T Consensus 20 ~y~l~~q~DgNLvly~--~~~~vW~ant~~~~~~~~~L~l~~dGnLvL~d~~~~~-vWss~t~------~~~~------~ 84 (105)
T 4h3o_A 20 PYHFIMQDDCNLVLYD--HSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDSSGRS-LWASHST------RGSG------N 84 (105)
T ss_dssp TEEEEECTTSCEEEEE--TTEEEEECCCCCTTCCSCEEEECTTSCEEEECTTCCE-EEECCCC------CCSS------C
T ss_pred CEEEEECCCCeEEEEE--CCEEEEEecCCCCCCccEEEEEeCCccEEEECCCcEE-EEEecCC------CCCC------C
Confidence 4555557788888877 233433322221 12335778999999887665554 7874210 0000 1
Q ss_pred eEEEECCCCCEEEE
Q 012410 352 NNIYITSDQDLIIS 365 (464)
Q Consensus 352 ~svafSpDg~~LaS 365 (464)
..+.+-+||.+++-
T Consensus 85 ~~l~L~ddGNlVly 98 (105)
T 4h3o_A 85 YILILQDDGNVIIY 98 (105)
T ss_dssp EEEEECTTSCEEEE
T ss_pred EEEEEeCCCeEEEE
Confidence 23567888888874
No 371
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=22.51 E-value=7e+02 Score=26.28 Aligned_cols=224 Identities=11% Similarity=0.047 Sum_probs=118.9
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCCcccceeeEEEEEeccCCCCCcccceeeccccCceEEEEeCCCCcEEEEecCCC
Q 012410 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 208 (464)
Q Consensus 129 ~~~i~Sv~fs~~g~~l~svSa~~sddfs~L~~~ti~l~~i~~G~~~~~~~l~~~~~~~~~~~VaFs~pdGk~LaSgs~D~ 208 (464)
+..|.+++--++|-+-+. ..+++...+|...+... ..+. + . ...+.++.-+ .+|.+.+ |+.++
T Consensus 21 ~n~V~~I~qD~~G~lWig----T~~GL~ryDG~~~~~~~-~~~~------~-~---~~~i~~i~~d-~~g~lWi-gT~~G 83 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIG----SNKGLFSYDGYSTQQHF-TYGE------N-N---NTRIYCGVII-DNTYLYM-GTDNG 83 (758)
T ss_dssp CCCEEEEEECTTSCEEEE----ESSCEEEECSSCEEECS-CTTS------T-T---SSCEEEEEEE-TTTEEEE-EETTE
T ss_pred cceEEEEEECCCCCEEEE----ECCCccccCCCceEEEE-ccCC------C-C---CceEEEEEEc-CCCcEEE-EeCCC
Confidence 455888888888876654 13343333333322211 0000 0 0 1223356665 6886655 44555
Q ss_pred cEEEEeCCCCeEEEEe--cCCCEeEEEEeCC-----CceeEEEEEcCCCcEEEEEe----eC-CcceeeEEEEccCCCeE
Q 012410 209 IYKVFDLKNYTMLYSI--SDKHVQEIKIRSS-----SHVPLKILSIEDGTVLKVFY----HL-LHRNKKVDFIEQFNEKL 276 (464)
Q Consensus 209 tiKlWdl~tg~~l~tl--~~~~V~~Vafs~s-----~d~tIklWdi~tG~~l~tl~----~~-~~~~~~V~F~~~~~~~l 276 (464)
+-.+|.++.+..... ....|..+..+.. ...-|-.+|.++++.. .+. .. ...+.++. .+.++.|
T Consensus 84 -l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~--~d~~g~l 159 (758)
T 3ott_A 84 -ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSII--RTKDNQI 159 (758)
T ss_dssp -EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEE--ECTTCCE
T ss_pred -eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEE--EcCCCCE
Confidence 667888876543211 1234666654321 1124666777766543 231 11 12334443 3335788
Q ss_pred EEEeCCCeEEEEECCCCcEEEEc-ccC----CCceEEEEEcCCCcEEEEEeCCeEEEEeCC-CceEEEecc-CCCCcCCC
Q 012410 277 LVKQENENLQILDVRNAELMEVS-RTE----FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED-HLLWHPDC 349 (464)
Q Consensus 277 la~s~D~tIkIWDv~tg~~l~~l-~gh----~~~v~sv~FspdgqllaS~sD~TIklWd~~-Ge~l~tl~g-H~~~~~~~ 349 (464)
.++..+ -|-.+|..+++..... ... ...|.++...+++..|--+.++-+-.+|.. ++. ..+.. ...
T Consensus 160 Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~-~~~~~l~~~----- 232 (758)
T 3ott_A 160 YVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQI-KQTEAFHNN----- 232 (758)
T ss_dssp EEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEE-EEEEEEEEE-----
T ss_pred EEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeE-EeccCCCCC-----
Confidence 887765 4777898887754332 111 124777777776653222333457778874 543 22221 111
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 012410 350 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 393 (464)
Q Consensus 350 ~v~svafSpDg~~LaSgs~~~~~~~~~~s~DgtIklWdi~tG~c 393 (464)
.|.+++..++|.+.+.. ++-+.++|..+++.
T Consensus 233 ~i~~i~~d~~g~lWigT-------------~~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 233 SIKSLALDGNGDLLAGT-------------DNGLYVYHNDTTPL 263 (758)
T ss_dssp EEEEEEECTTCCEEEEE-------------TTEEEEECCTTSCC
T ss_pred eEEEEEEcCCCCEEEEe-------------CCceeEEecCCCcE
Confidence 27889999999988754 33477888877764
No 372
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}
Probab=22.29 E-value=3.5e+02 Score=22.78 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=40.0
Q ss_pred cCCCcEEEEeCCCCeEEEEecCCCEeEEEEeCCCceeEEEEEcCCCcEEEEEeeCCcceeeEEEEccCCCeEEEEeCCCe
Q 012410 205 AQDSIYKVFDLKNYTMLYSISDKHVQEIKIRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENEN 284 (464)
Q Consensus 205 s~D~tiKlWdl~tg~~l~tl~~~~V~~Vafs~s~d~tIklWdi~tG~~l~tl~~~~~~~~~V~F~~~~~~~lla~s~D~t 284 (464)
-.+++++|-+..+|.||-.-.. +......|.+|+-..+. ...|. +....++.
T Consensus 24 ~~~g~y~i~n~~sg~cLdv~~~--------~~~~g~~v~~~~c~~~~---------~Q~W~-----------~~~~~~g~ 75 (165)
T 3pg0_A 24 MGDGYYKLVARHSGKALDVENA--------STSDGANVIQYSYSGGD---------NQQWR-----------LVDLGDGY 75 (165)
T ss_dssp --CCEEEEEETTTCCEEEEGGG--------CCSTTCBEEEECCCCCG---------GGCEE-----------EEEEETTE
T ss_pred CCCCEEEEEECCCCCEEEeCCC--------CCCCCCEEEEECCCCCc---------cceEE-----------EEECCCCE
Confidence 4477888888888888743211 11223456677654321 11122 22234688
Q ss_pred EEEEECCCCcEEEEccc
Q 012410 285 LQILDVRNAELMEVSRT 301 (464)
Q Consensus 285 IkIWDv~tg~~l~~l~g 301 (464)
.+|-+..+|+|+.+..+
T Consensus 76 y~i~~~~sg~cLdv~~~ 92 (165)
T 3pg0_A 76 YKLVARHSGKALDVENA 92 (165)
T ss_dssp EEEEETTTCCEEEEGGG
T ss_pred EEEEECCCCCEEEeCCC
Confidence 88999899999987543
Done!