BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012412
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 141/480 (29%), Positives = 241/480 (50%), Gaps = 39/480 (8%)
Query: 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDXXXXXIP------LE 68
H +++ YP QGHINPL + ++ L +G +T V T + +K L + E
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFE 69
Query: 69 AISDGYD--EGGYAQAESIEAYLERFWQIGPQTLTELVEKMNGSDS--PVDCIVYDSILL 124
+I DG EG ++ + + + + EL+ ++N S + PV C+V D +
Sbjct: 70 SIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMS 129
Query: 125 WALDVAKKFGLLGAPFLTQSCA----VDYIYYHVKKGSLELPLTGNEIL----------- 169
+ + A++F L + + S V + V++G + P L
Sbjct: 130 FTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGII--PFKDESYLTNGCLETKVDW 187
Query: 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKAD---WVLCNTFYELEEEVVE 226
+PG+ +D+ FI + +M++F E D+ + +L NTF ELE +V+
Sbjct: 188 IPGLKNFRLKDIVDFIRTTNP----NDIMLEFFIEVADRVNKDTTILLNTFNELESDVIN 243
Query: 227 WLRKTW-SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSY 285
L T S+ IGP QI +++K TE C+ WL + SVVYV++
Sbjct: 244 ALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTE-CLDWLESKEPGSVVYVNF 302
Query: 286 GSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLT--SHKSLVVSWCP 343
GS + E++ E AWGL + + FLW++R FS E + + L+ SWCP
Sbjct: 303 GSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCP 362
Query: 344 QLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPI 403
Q +VL H + G F+THCGWNST E++ GVPM+ P ++DQ T+ ++I + W+ G++
Sbjct: 363 QDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDT 422
Query: 404 -VKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACSKN 462
VKR+ +A I+E++ G++GK++++ A + +K A+E GG S N+++ + + +N
Sbjct: 423 NVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVLLKQN 482
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/404 (29%), Positives = 202/404 (50%), Gaps = 44/404 (10%)
Query: 70 ISDGYDEGGYAQAESIEAYLERFWQIGPQTLTE-LVEKMNGSDSPVDCIVYDSILLWALD 128
ISDG EG Y A + +E F + P++ + +V + + PV C+V D+ + +A D
Sbjct: 69 ISDGVPEG-YVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAAD 127
Query: 129 VAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTG-----NEIL--LPGMPPLEPQDM 181
+A + G+ PF T + ++ + ++ ++G +E+L +PGM + +D+
Sbjct: 128 MAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDL 187
Query: 182 PSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLR---KTW------ 232
I G+ ++ M+ + + KA V N+F EL++ + L+ KT+
Sbjct: 188 QEGIV-FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPF 246
Query: 233 SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELK 292
+L T P +P+ T C++WL +R SVVY+S+G+
Sbjct: 247 NLITPPPVVPN---------------------TTGCLQWLKERKPTSVVYISFGTVTTPP 285
Query: 293 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEA 352
E+ L+ L++S F+W +R+ + LP+ F ++T +VV W PQ EVLAHEA
Sbjct: 286 PAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKT--RGYGMVVPWAPQAEVLAHEA 343
Query: 353 TGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIA 410
G FVTHCGWNS E+++ GVP++ P + DQ N + + DV + G++ + + +
Sbjct: 344 VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLM 403
Query: 411 DCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFV 454
C +IL E+GK+LR N R+ A AV GSS N V
Sbjct: 404 SCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 130/478 (27%), Positives = 218/478 (45%), Gaps = 69/478 (14%)
Query: 12 KLAHCLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTT---------RFFYKSLHRDXX 61
K H ++ PG GH+ PL++F++RL H G+ VT V R SL
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS 64
Query: 62 XXXIPLEAISDGYDEGGYAQAESIEAYLE-RFWQIGPQTLTELVEKMNGSDSPVDCIVYD 120
+P ++D + + IE+ + + P+ + G P +V D
Sbjct: 65 SVFLPPVDLTD------LSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPT-ALVVD 117
Query: 121 SILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKK----GSLELPLTGNEILLPGMPPL 176
A DVA +F + F + V + H+ K S E ++LPG P+
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPV 177
Query: 177 EPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTW---- 232
+D F+ +Y + + +A+ +L NTF+ELE ++ L++
Sbjct: 178 AGKD---FLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKP 234
Query: 233 SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEA-CMKWLNDRAKESVVYVSYGSFVEL 291
+ +GP + + G K + E+ C+KWL+++ SV+YVS+GS L
Sbjct: 235 PVYPVGPLV-------------NIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTL 281
Query: 292 KAEEMEELAWGLKSSDQHFLWVVRESEQAK----------------LPKKFSDETLTSHK 335
E++ ELA GL S+Q FLWV+R LP F + T +
Sbjct: 282 TCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT--KKR 339
Query: 336 SLVVS-WCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDV 394
V+ W PQ +VLAH +TG F+THCGWNST+E++ G+P++A P +++Q NA + +
Sbjct: 340 GFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED 399
Query: 395 WKTGLKFP------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSS 446
+ L+ P +V+R+ +A + ++EGE GK +R + ++ A + G+S
Sbjct: 400 IRAALR-PRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTS 456
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/460 (25%), Positives = 203/460 (44%), Gaps = 55/460 (11%)
Query: 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT-------RFFYKSLHRDXXXXX 64
L H VL +P H PLL +++ + KVT F +S +
Sbjct: 12 NLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRS---NEFLPN 68
Query: 65 IPLEAISDGYDEGGYAQAES-------IEAYLERFWQIGPQTLTELVEKMNGSDSPVDCI 117
I + DG +G + I+A E F + + + E + + C+
Sbjct: 69 IKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAE-------TGKNITCL 121
Query: 118 VYDSILLWALDVAKKFGLLGAPFLTQS--CAVDYIYYHV---KKGSLELPLTGNEILLPG 172
V D+ + D+A++ P T + ++Y + K GS E+ + +LPG
Sbjct: 122 VTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPG 181
Query: 173 MPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTW 232
P L+ D+P + P + M+ K E + +A+ V N+F + + L +
Sbjct: 182 FPELKASDLPEGVIKDIDVP-FATMLHKMGLE-LPRANAVAINSFATIHPLIENELNSKF 239
Query: 233 SLR-TIGP---TIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSF 288
L +GP T P +++ D+ C++WL+ SVVY+S+GS
Sbjct: 240 KLLLNVGPFNLTTP----QRKVSDE------------HGCLEWLDQHENSSVVYISFGSV 283
Query: 289 VELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVL 348
V E+ LA L+ F+W R + KLPK F + T T K +V+W PQ+E+L
Sbjct: 284 VTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGK--IVAWAPQVEIL 341
Query: 349 AHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKR 406
H + G F+TH GWNS +E + GVPM++ P + DQ N V + G+ ++ +
Sbjct: 342 KHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTK 401
Query: 407 DAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSS 446
++I + + E+G +R+ K ++ A +AV + G+S
Sbjct: 402 ESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTS 441
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 121/487 (24%), Positives = 219/487 (44%), Gaps = 66/487 (13%)
Query: 12 KLAHCLVLTYPGQGHINPLLQFSRRLQH--KGIKVTLVTTRF--------FYKS-LHRDX 60
K + + + PG GH+ L+F++ L + K + +T+ +F + KS L
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 61 XXXXIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTL-TELVEKMNGSDSPVDCIVY 119
I L + E + I +LE T+ T L K+ G +V
Sbjct: 68 QIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVG-------LVL 120
Query: 120 DSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNE-----ILLPGMP 174
D + +DV +FG+ FLT + + +K +E ++ + +PG+
Sbjct: 121 DFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGIS 180
Query: 175 PLEPQDM---PSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWL--- 228
P ++ F D G Y A + +F+ ++ NTF +LE+ ++ L
Sbjct: 181 NQVPSNVLPDACFNKD-GGYIAYYKLAERFR-----DTKGIIVNTFSDLEQSSIDALYDH 234
Query: 229 -RKTWSLRTIGPTI-----PSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVY 282
K + +GP + P+ LD+ D +KWL+++ +SVV+
Sbjct: 235 DEKIPPIYAVGPLLDLKGQPNPKLDQAQHD--------------LILKWLDEQPDKSVVF 280
Query: 283 VSYGSF-VELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSW 341
+ +GS V ++ E+A GLK S FLW +E+ P+ F + K ++ W
Sbjct: 281 LCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGW 339
Query: 342 CPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKF 401
PQ+EVLAH+A G FV+HCGWNS +E++ GVP++ P +++Q NA ++ W GL
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399
Query: 402 PIVKRDAIADCIS--EILEG-----ERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFV 454
+ R +D ++ EI +G ++ + + + +++++ AV GGSS ++ + +
Sbjct: 400 RVDYRKG-SDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLI 458
Query: 455 ASLACSK 461
+ S
Sbjct: 459 DDITGSN 465
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/480 (25%), Positives = 217/480 (45%), Gaps = 66/480 (13%)
Query: 12 KLAHCLVLTYPGQGHINPLLQFSRRLQH--KGIKVTLVTTRF--------FYKS-LHRDX 60
K + + + PG GH+ L+F++ L + K + +T+ +F + KS L
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 61 XXXXIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTL-TELVEKMNGSDSPVDCIVY 119
I L + E + I +LE T+ T L K+ G +V
Sbjct: 68 QIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVG-------LVL 120
Query: 120 DSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNE-----ILLPGMP 174
D + +DV +FG+ FLT + + +K +E ++ + +PG+
Sbjct: 121 DFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGIS 180
Query: 175 PLEPQDM---PSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWL--- 228
P ++ F D G Y A + +F+ ++ NTF +LE+ ++ L
Sbjct: 181 NQVPSNVLPDACFNKD-GGYIAYYKLAERFR-----DTKGIIVNTFSDLEQSSIDALYDH 234
Query: 229 -RKTWSLRTIGPTI-----PSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVY 282
K + +GP + P+ LD+ D +KWL+++ +SVV+
Sbjct: 235 DEKIPPIYAVGPLLDLKGQPNPKLDQAQHD--------------LILKWLDEQPDKSVVF 280
Query: 283 VSYGSF-VELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSW 341
+ +GS V ++ E+A GLK S FLW +E+ P+ F + K ++ W
Sbjct: 281 LCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGW 339
Query: 342 CPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKF 401
PQ+EVLAH+A G FV+HCGWNS +E++ GVP++ P +++Q NA ++ W GL
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399
Query: 402 PIVKRDAIADCIS--EILEG-----ERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFV 454
+ R +D ++ EI +G ++ + + + +++++ AV GGSS ++ + +
Sbjct: 400 RVDYRKG-SDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLI 458
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 338 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDV 394
V W PQL++L + F+TH G STMEALS VPMVA+PQ ++Q+ NA+ I+++
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 7 KPTSCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52
+ S H PG GH+NP L + L +G +V+ T F
Sbjct: 6 RSASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEF 51
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 271 WLNDRAKESVVYVSYGSFVELKAEEMEE-LAWGLKSSDQHFLWVVRESEQAKLPKKFSDE 329
++ + VV S GS V EE +A L Q LW ++ +
Sbjct: 14 FVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGNKP---------D 64
Query: 330 TLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAK 389
TL + L W PQ ++L H T F+TH G N EA+ G+P V +P ++DQ N
Sbjct: 65 TLGLNTRLY-KWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIA 123
Query: 390 Y 390
+
Sbjct: 124 H 124
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 338 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKT 397
V W PQL +L FVTH G + E L+ PM+A+PQ DQ NA + +
Sbjct: 287 VHDWVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGL--- 341
Query: 398 GLKFPIVKRDAIADCISE-----ILEGERGKELRR 427
G+ + +A AD + E + + E + LRR
Sbjct: 342 GVARKLATEEATADLLRETALALVDDPEVARRLRR 376
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 9 TSCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDXXXXXIPLE 68
T AH + + GH+NP L+ R L +G +VT F + +
Sbjct: 3 TQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVL-YH 61
Query: 69 AISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALD 128
+ G D A ++ +E F Q L +L + +D D +++D A
Sbjct: 62 STLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQLADAY--ADDIPDLVLHDITSYPARV 119
Query: 129 VAKKFGL 135
+A+++G+
Sbjct: 120 LARRWGV 126
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 341 WCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLK 400
W P ++VL +AT C VTH G + EAL G P+V +PQ D A+ + D G
Sbjct: 304 WVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 401 FPIVKRDA 408
P K D
Sbjct: 361 LPGEKADG 368
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 341 WCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLK 400
W P ++VL +AT C VTH G + EAL G P+V +PQ D A+ + D G
Sbjct: 304 WVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 401 FPIVKRDA 408
P K D
Sbjct: 361 LPGEKADG 368
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 340 SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQS 385
SW PQ +L H V H G +T+ AL GVP ++ P W+ S
Sbjct: 298 SWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFP-WAGDS 340
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 341 WCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQST 386
W P VLAH A C +TH + +EA + GVP+V +P ++ ++
Sbjct: 288 WIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAA 331
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDXXXXXIPLEAISDGY 74
H L G GH+ P L L +G ++T VTT F + + + ++ D +
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEV-KAAGAEVVLYKSEFDTF 64
Query: 75 DEGGYAQAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYD 120
+ E E L + + E+ G D+P D +VYD
Sbjct: 65 HVPEVVKQEDAETQLHLVYVRENVAILRAAEEALG-DNPPDLVVYD 109
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 338 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTN 387
VV W P +L E + H G + + AL+ GVP +P S Q TN
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 338 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTN 387
VV W P +L E + H G + + AL+ GVP +P S Q TN
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 339 VSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTG 398
V W P L+V+A V H G ST+ LS GVP + +P+ S A+ + D
Sbjct: 268 VGWTP-LDVVA-PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAI 325
Query: 399 LKFPIV-KRDAIADCISEILE----GERGKELRR 427
P +AIAD E+ R ++L R
Sbjct: 326 ALLPGEDSTEAIADSCQELQAKDTYARRAQDLSR 359
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 29/152 (19%)
Query: 327 SDETLTSHKSL--VVSWCPQLEVLAHEATGCFVT-----HCGWNSTMEALSLGVPMVAMP 379
+D T+ ++ SL ++ ++ A + FV HCGW M ++ G + +P
Sbjct: 367 TDSTIGAYSSLERIIELVDYIDATAASHSRAFVVEVMGRHCGWLGLMSGIATGADYIFIP 426
Query: 380 QWSDQSTNAKYILDVWKTGLK--------------FPIVKRDAIADCISEILEGERGKEL 425
+ +N WK LK IV AI D ++ I E K++
Sbjct: 427 ERPPSESN-------WKDDLKKVCLRHREKGRRKTTVIVAEGAIDDQLNPITS-EEVKDV 478
Query: 426 RRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 457
G ++ + + G + D F+A++
Sbjct: 479 LVEIGLDTRITRLGHVQRGGAPCAFDRFLATV 510
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 79 YAQAESIEAYLERF----WQIGPQTLTELVEKMNGSDSPV------DCIVYD 120
Y + ESI+ + F WQ+ + E+ ++MNGSDS + DCI D
Sbjct: 127 YLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDSGMFACKYADCITKD 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,499,509
Number of Sequences: 62578
Number of extensions: 602454
Number of successful extensions: 1252
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1210
Number of HSP's gapped (non-prelim): 29
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)