Query 012412
Match_columns 464
No_of_seqs 123 out of 1286
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 1.8E-64 3.9E-69 496.4 48.4 442 10-461 4-471 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 3.9E-64 8.3E-69 490.0 46.6 437 13-459 5-448 (449)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.4E-62 3E-67 481.5 46.8 429 11-459 5-450 (451)
4 PLN02562 UDP-glycosyltransfera 100.0 6.8E-62 1.5E-66 478.1 45.9 427 13-458 6-448 (448)
5 PLN02210 UDP-glucosyl transfer 100.0 1.1E-61 2.3E-66 477.1 46.5 435 11-459 6-455 (456)
6 PLN02152 indole-3-acetate beta 100.0 5.5E-61 1.2E-65 468.7 45.3 428 14-457 4-454 (455)
7 PLN02448 UDP-glycosyltransfera 100.0 3.9E-60 8.5E-65 469.4 46.2 432 9-460 6-458 (459)
8 PLN02207 UDP-glycosyltransfera 100.0 1E-59 2.3E-64 460.6 46.9 433 12-461 2-467 (468)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.6E-60 1.2E-64 466.3 44.8 438 11-460 7-472 (477)
10 PLN02992 coniferyl-alcohol glu 100.0 2.2E-59 4.8E-64 459.0 45.3 420 13-459 5-469 (481)
11 PLN03007 UDP-glucosyltransfera 100.0 6.9E-59 1.5E-63 462.7 45.5 436 11-459 3-480 (482)
12 PLN02534 UDP-glycosyltransfera 100.0 8.5E-59 1.8E-63 456.8 45.1 434 12-459 7-486 (491)
13 PLN00164 glucosyltransferase; 100.0 1.2E-58 2.6E-63 458.4 45.7 427 12-461 2-475 (480)
14 PLN02670 transferase, transfer 100.0 5.6E-59 1.2E-63 455.9 42.0 428 12-462 5-468 (472)
15 PLN02554 UDP-glycosyltransfera 100.0 1E-58 2.2E-63 460.9 43.6 425 13-460 2-479 (481)
16 PLN03015 UDP-glucosyl transfer 100.0 2.3E-58 5E-63 449.2 44.8 421 13-457 3-466 (470)
17 PLN03004 UDP-glycosyltransfera 100.0 3.3E-58 7.2E-63 448.6 43.1 417 13-448 3-450 (451)
18 PLN02167 UDP-glycosyltransfera 100.0 3.7E-57 7.9E-62 449.0 44.1 430 12-460 2-473 (475)
19 PLN02764 glycosyltransferase f 100.0 4.4E-57 9.6E-62 438.9 42.6 414 13-462 5-448 (453)
20 PLN02208 glycosyltransferase f 100.0 4.9E-57 1.1E-61 441.2 43.0 413 13-459 4-439 (442)
21 PLN00414 glycosyltransferase f 100.0 2.7E-56 5.9E-61 436.5 42.5 413 13-461 4-442 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.4E-46 2.9E-51 375.0 33.8 402 12-459 19-466 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.6E-46 3.5E-51 381.2 14.3 382 15-445 2-432 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 3.9E-43 8.4E-48 345.4 29.6 363 19-439 1-376 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3.4E-42 7.3E-47 340.3 26.8 362 14-438 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 1.4E-40 3E-45 323.2 26.3 390 13-460 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.8E-38 6.1E-43 320.9 21.5 390 13-439 5-439 (496)
28 PRK12446 undecaprenyldiphospho 100.0 2.2E-27 4.8E-32 228.0 28.0 320 14-431 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 100.0 9.1E-27 2E-31 223.0 26.3 304 14-416 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 3.1E-23 6.6E-28 196.8 30.2 311 14-420 1-325 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 2.7E-23 5.8E-28 198.5 25.6 309 15-420 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.9 4.5E-20 9.7E-25 179.6 28.9 324 13-435 1-337 (357)
33 cd03785 GT1_MurG MurG is an N- 99.9 5E-19 1.1E-23 171.9 27.5 315 15-420 1-325 (350)
34 TIGR01133 murG undecaprenyldip 99.8 3.7E-17 8E-22 158.6 28.3 310 14-420 1-322 (348)
35 COG4671 Predicted glycosyl tra 99.8 5.2E-17 1.1E-21 146.8 23.9 339 10-419 6-365 (400)
36 TIGR00215 lpxB lipid-A-disacch 99.8 1.1E-16 2.4E-21 156.2 22.3 348 14-454 6-383 (385)
37 TIGR03590 PseG pseudaminic aci 99.8 8.8E-17 1.9E-21 149.7 20.0 106 278-390 170-278 (279)
38 PRK13609 diacylglycerol glucos 99.7 3.5E-16 7.7E-21 153.5 23.4 136 276-420 200-339 (380)
39 PRK13608 diacylglycerol glucos 99.7 4.6E-15 1E-19 145.6 23.3 136 276-420 200-339 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.7 1.4E-14 3E-19 142.3 22.1 316 13-420 1-342 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 7.7E-17 1.7E-21 138.8 -0.8 135 280-420 1-145 (167)
42 TIGR03492 conserved hypothetic 99.6 7.8E-13 1.7E-17 129.3 27.0 326 22-420 5-365 (396)
43 PLN02605 monogalactosyldiacylg 99.6 4.5E-13 9.8E-18 131.3 24.2 146 266-419 194-347 (382)
44 cd03800 GT1_Sucrose_synthase T 99.5 1.8E-10 3.9E-15 113.7 32.9 328 24-420 21-369 (398)
45 cd03818 GT1_ExpC_like This fam 99.5 8E-11 1.7E-15 116.3 30.1 81 333-420 280-367 (396)
46 cd03814 GT1_like_2 This family 99.5 1E-10 2.2E-15 113.6 30.4 129 278-420 196-333 (364)
47 cd03794 GT1_wbuB_like This fam 99.4 1.5E-10 3.2E-15 113.3 29.4 135 277-420 218-366 (394)
48 PLN02871 UDP-sulfoquinovose:DA 99.4 2.6E-10 5.6E-15 114.9 31.7 139 279-431 263-413 (465)
49 cd03823 GT1_ExpE7_like This fa 99.4 2.5E-10 5.4E-15 110.6 28.9 133 277-420 189-330 (359)
50 cd04962 GT1_like_5 This family 99.4 7.8E-10 1.7E-14 108.1 32.5 133 278-420 196-337 (371)
51 cd03808 GT1_cap1E_like This fa 99.4 8E-10 1.7E-14 106.7 32.1 318 15-420 1-330 (359)
52 PRK10307 putative glycosyl tra 99.4 1.1E-09 2.3E-14 108.9 33.0 143 278-432 228-387 (412)
53 cd03816 GT1_ALG1_like This fam 99.4 8.8E-10 1.9E-14 109.3 30.7 336 13-419 3-381 (415)
54 COG3980 spsG Spore coat polysa 99.4 1.4E-10 3E-15 102.4 21.6 148 278-436 158-307 (318)
55 TIGR02468 sucrsPsyn_pln sucros 99.4 1.9E-09 4E-14 114.0 32.9 377 11-431 167-650 (1050)
56 PF03033 Glyco_transf_28: Glyc 99.4 9.7E-14 2.1E-18 115.7 0.6 121 16-144 1-131 (139)
57 TIGR03449 mycothiol_MshA UDP-N 99.4 4E-09 8.6E-14 104.6 32.5 331 23-420 19-369 (405)
58 cd03817 GT1_UGDG_like This fam 99.3 1.2E-09 2.6E-14 106.2 27.8 135 277-420 200-344 (374)
59 cd03801 GT1_YqgM_like This fam 99.3 2.9E-09 6.2E-14 103.0 29.9 134 277-420 197-342 (374)
60 TIGR02472 sucr_P_syn_N sucrose 99.3 7.5E-09 1.6E-13 103.5 32.4 133 279-420 248-407 (439)
61 cd03805 GT1_ALG2_like This fam 99.3 3.9E-09 8.5E-14 104.1 29.6 81 332-420 278-365 (392)
62 PRK05749 3-deoxy-D-manno-octul 99.3 1.9E-09 4.1E-14 107.5 25.4 81 335-420 303-389 (425)
63 cd03820 GT1_amsD_like This fam 99.3 6.1E-09 1.3E-13 100.0 27.8 135 278-420 177-320 (348)
64 cd03825 GT1_wcfI_like This fam 99.3 2.5E-08 5.5E-13 97.1 31.4 82 332-420 242-331 (365)
65 cd03795 GT1_like_4 This family 99.2 1.3E-08 2.9E-13 98.7 28.7 135 278-420 190-333 (357)
66 cd03796 GT1_PIG-A_like This fa 99.2 1.8E-08 3.9E-13 99.6 29.6 134 277-420 191-334 (398)
67 TIGR02470 sucr_synth sucrose s 99.2 6E-08 1.3E-12 100.6 32.5 129 280-417 551-707 (784)
68 cd05844 GT1_like_7 Glycosyltra 99.2 1.9E-08 4.2E-13 98.1 27.8 82 332-420 243-337 (367)
69 cd03798 GT1_wlbH_like This fam 99.2 7.9E-08 1.7E-12 93.2 31.3 137 277-420 200-345 (377)
70 cd03821 GT1_Bme6_like This fam 99.2 7.3E-08 1.6E-12 93.6 30.8 131 277-420 201-346 (375)
71 PRK09922 UDP-D-galactose:(gluc 99.2 1.2E-08 2.5E-13 99.5 24.3 149 279-434 180-342 (359)
72 TIGR00236 wecB UDP-N-acetylglu 99.2 3.4E-09 7.3E-14 103.5 20.3 138 278-430 197-342 (365)
73 cd03822 GT1_ecORF704_like This 99.2 1.9E-07 4.2E-12 90.7 32.1 81 332-420 245-335 (366)
74 PF04007 DUF354: Protein of un 99.1 2.7E-08 5.8E-13 93.9 24.5 298 14-417 1-308 (335)
75 cd03811 GT1_WabH_like This fam 99.1 1.3E-08 2.8E-13 97.8 23.1 134 277-420 187-333 (353)
76 cd03819 GT1_WavL_like This fam 99.1 1.3E-07 2.7E-12 91.8 30.0 135 277-418 183-329 (355)
77 TIGR03088 stp2 sugar transfera 99.1 1.8E-07 4E-12 91.6 30.2 136 277-420 192-339 (374)
78 cd03799 GT1_amsK_like This is 99.1 9.1E-08 2E-12 92.7 26.8 136 277-420 177-328 (355)
79 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 2.5E-09 5.4E-14 104.4 15.3 134 277-420 197-338 (363)
80 cd03802 GT1_AviGT4_like This f 99.1 3.8E-08 8.2E-13 94.7 23.0 129 280-419 172-308 (335)
81 cd04951 GT1_WbdM_like This fam 99.1 1.3E-07 2.9E-12 91.8 27.1 132 277-420 186-327 (360)
82 PLN00142 sucrose synthase 99.1 1.8E-07 4E-12 97.1 28.9 133 279-420 573-737 (815)
83 TIGR02149 glgA_Coryne glycogen 99.0 7.2E-07 1.6E-11 87.8 31.1 134 278-420 200-353 (388)
84 PRK14089 ipid-A-disaccharide s 99.0 2.2E-08 4.8E-13 95.3 19.2 146 278-436 167-332 (347)
85 cd04955 GT1_like_6 This family 99.0 3.2E-07 7E-12 89.2 27.2 127 281-420 195-331 (363)
86 cd03812 GT1_CapH_like This fam 99.0 2.1E-07 4.5E-12 90.4 25.5 135 277-420 190-332 (358)
87 cd03807 GT1_WbnK_like This fam 99.0 1.7E-06 3.7E-11 83.6 30.2 147 277-437 191-348 (365)
88 PRK15427 colanic acid biosynth 99.0 1E-06 2.2E-11 87.1 28.0 133 278-420 221-372 (406)
89 PLN02275 transferase, transfer 98.9 9.8E-07 2.1E-11 86.3 26.9 75 334-417 286-371 (371)
90 PLN02949 transferase, transfer 98.9 5.8E-06 1.3E-10 82.6 30.7 80 332-419 333-422 (463)
91 PRK00654 glgA glycogen synthas 98.9 6.6E-07 1.4E-11 90.2 23.9 132 278-418 281-427 (466)
92 cd03809 GT1_mtfB_like This fam 98.9 1E-06 2.2E-11 85.6 24.0 134 278-420 194-337 (365)
93 cd03792 GT1_Trehalose_phosphor 98.8 7.1E-06 1.5E-10 80.3 28.8 134 278-420 189-338 (372)
94 COG1519 KdtA 3-deoxy-D-manno-o 98.8 7.5E-06 1.6E-10 77.7 27.0 312 15-420 50-387 (419)
95 TIGR03087 stp1 sugar transfera 98.8 3E-07 6.4E-12 90.9 18.7 80 332-420 278-363 (397)
96 PRK15179 Vi polysaccharide bio 98.8 1.3E-05 2.8E-10 83.4 30.3 147 278-432 516-673 (694)
97 cd03804 GT1_wbaZ_like This fam 98.8 5.3E-07 1.2E-11 87.5 19.1 127 281-420 197-327 (351)
98 KOG3349 Predicted glycosyltran 98.7 8.1E-08 1.8E-12 76.6 9.0 113 279-396 4-127 (170)
99 cd03806 GT1_ALG11_like This fa 98.7 1.2E-05 2.5E-10 80.0 26.7 81 332-420 303-393 (419)
100 TIGR02095 glgA glycogen/starch 98.7 7.1E-06 1.5E-10 83.0 25.1 134 278-418 290-436 (473)
101 PLN02316 synthase/transferase 98.7 7.1E-05 1.5E-09 80.2 31.9 135 279-419 840-998 (1036)
102 PF02350 Epimerase_2: UDP-N-ac 98.7 1.4E-07 3.1E-12 90.5 10.9 140 276-431 178-327 (346)
103 PRK15484 lipopolysaccharide 1, 98.7 6.8E-05 1.5E-09 73.5 29.8 82 332-420 255-345 (380)
104 PRK01021 lpxB lipid-A-disaccha 98.6 1.8E-05 3.9E-10 79.4 25.1 180 266-458 401-604 (608)
105 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 4E-06 8.7E-11 81.4 20.2 131 277-418 200-338 (365)
106 COG0763 LpxB Lipid A disacchar 98.6 1.4E-05 2.9E-10 75.2 22.1 183 264-457 174-379 (381)
107 cd03791 GT1_Glycogen_synthase_ 98.6 5E-05 1.1E-09 77.0 28.1 137 278-419 295-442 (476)
108 PF02684 LpxB: Lipid-A-disacch 98.6 1.1E-05 2.4E-10 77.5 20.6 162 276-446 182-364 (373)
109 TIGR02918 accessory Sec system 98.6 1.3E-05 2.9E-10 80.9 22.0 148 279-436 319-484 (500)
110 PLN02846 digalactosyldiacylgly 98.5 3.1E-05 6.6E-10 76.6 22.7 124 281-420 230-364 (462)
111 cd04950 GT1_like_1 Glycosyltra 98.5 0.00017 3.7E-09 70.6 27.4 125 280-420 206-341 (373)
112 cd04949 GT1_gtfA_like This fam 98.4 2.8E-05 6.1E-10 76.1 20.6 151 279-436 204-363 (372)
113 cd03813 GT1_like_3 This family 98.4 9.7E-05 2.1E-09 74.8 24.0 135 277-420 291-443 (475)
114 COG0381 WecB UDP-N-acetylgluco 98.4 4.5E-05 9.7E-10 71.9 19.6 336 12-437 2-356 (383)
115 PRK10017 colanic acid biosynth 98.4 0.0015 3.4E-08 64.3 31.3 177 269-460 225-425 (426)
116 PF00534 Glycos_transf_1: Glyc 98.4 4.4E-06 9.6E-11 72.0 12.1 138 276-420 12-159 (172)
117 PRK15490 Vi polysaccharide bio 98.3 0.00042 9E-09 69.4 24.9 126 280-413 399-532 (578)
118 PLN02939 transferase, transfer 98.3 0.0011 2.4E-08 70.2 28.9 134 279-418 779-930 (977)
119 PRK10125 putative glycosyl tra 98.3 0.0012 2.6E-08 65.3 27.7 116 280-414 242-366 (405)
120 PF13844 Glyco_transf_41: Glyc 98.1 5.3E-05 1.1E-09 74.3 13.9 141 276-420 282-431 (468)
121 cd04946 GT1_AmsK_like This fam 98.1 7.3E-05 1.6E-09 74.0 15.3 132 278-420 229-378 (407)
122 COG5017 Uncharacterized conser 98.1 2.4E-05 5.2E-10 61.5 8.0 108 281-402 2-122 (161)
123 PRK14099 glycogen synthase; Pr 98.0 0.0089 1.9E-07 60.5 28.4 133 279-420 295-448 (485)
124 PLN02501 digalactosyldiacylgly 98.0 0.0077 1.7E-07 61.7 25.9 76 335-420 602-682 (794)
125 cd01635 Glycosyltransferase_GT 97.9 0.00058 1.3E-08 61.1 16.6 49 332-382 159-215 (229)
126 COG3914 Spy Predicted O-linked 97.9 0.00082 1.8E-08 66.1 16.3 107 276-386 427-543 (620)
127 PF13692 Glyco_trans_1_4: Glyc 97.7 7.5E-05 1.6E-09 61.4 6.4 80 333-419 52-135 (135)
128 PHA01633 putative glycosyl tra 97.7 0.00058 1.3E-08 64.9 12.1 86 332-420 199-308 (335)
129 TIGR02193 heptsyl_trn_I lipopo 97.7 0.0033 7.1E-08 60.1 17.3 136 271-417 172-319 (319)
130 PRK09814 beta-1,6-galactofuran 97.6 0.00089 1.9E-08 64.4 13.2 98 332-438 205-318 (333)
131 PRK10422 lipopolysaccharide co 97.6 0.0056 1.2E-07 59.4 18.6 99 277-378 182-287 (352)
132 PRK10916 ADP-heptose:LPS hepto 97.6 0.011 2.4E-07 57.3 19.8 103 14-139 1-106 (348)
133 TIGR02201 heptsyl_trn_III lipo 97.4 0.0085 1.8E-07 57.9 16.9 97 277-378 180-285 (344)
134 TIGR02195 heptsyl_trn_II lipop 97.4 0.016 3.5E-07 55.7 18.7 96 277-378 173-276 (334)
135 PRK10964 ADP-heptose:LPS hepto 97.4 0.0076 1.6E-07 57.7 15.4 132 278-418 178-321 (322)
136 KOG4626 O-linked N-acetylgluco 97.3 0.013 2.7E-07 58.4 16.2 153 276-439 756-918 (966)
137 COG0859 RfaF ADP-heptose:LPS h 97.3 0.03 6.4E-07 53.8 19.0 266 13-377 1-275 (334)
138 COG1817 Uncharacterized protei 97.3 0.14 3E-06 47.1 24.1 112 14-144 1-114 (346)
139 PRK14098 glycogen synthase; Pr 97.3 0.0075 1.6E-07 61.1 15.0 133 278-417 306-449 (489)
140 PF06722 DUF1205: Protein of u 97.2 0.00061 1.3E-08 51.9 4.9 65 266-337 28-97 (97)
141 cd03789 GT1_LPS_heptosyltransf 96.9 0.056 1.2E-06 50.5 16.4 102 15-139 1-105 (279)
142 PF13477 Glyco_trans_4_2: Glyc 96.6 0.02 4.3E-07 47.1 9.9 103 15-142 1-107 (139)
143 PF06258 Mito_fiss_Elm1: Mitoc 96.5 0.27 5.8E-06 46.5 17.4 56 343-402 221-281 (311)
144 PHA01630 putative group 1 glyc 96.3 0.14 3.1E-06 49.0 14.5 91 340-434 196-309 (331)
145 PF13524 Glyco_trans_1_2: Glyc 96.2 0.041 8.9E-07 41.6 8.6 83 359-454 9-91 (92)
146 PF01975 SurE: Survival protei 96.1 0.052 1.1E-06 47.4 9.7 118 14-144 1-135 (196)
147 TIGR02400 trehalose_OtsA alpha 96.0 0.26 5.7E-06 49.4 15.5 105 338-458 340-455 (456)
148 PF10093 DUF2331: Uncharacteri 95.8 1.9 4.1E-05 41.5 21.4 48 335-389 245-297 (374)
149 cd03788 GT1_TPS Trehalose-6-Ph 95.7 0.16 3.5E-06 51.2 12.4 105 337-457 344-459 (460)
150 PF13579 Glyco_trans_4_4: Glyc 95.6 0.038 8.3E-07 46.1 6.8 98 28-142 5-104 (160)
151 TIGR03713 acc_sec_asp1 accesso 95.4 0.11 2.5E-06 52.8 10.1 92 334-437 409-507 (519)
152 COG3660 Predicted nucleoside-d 95.1 1.7 3.8E-05 39.1 15.3 36 340-377 234-270 (329)
153 COG0438 RfaG Glycosyltransfera 94.3 1.6 3.4E-05 41.1 14.7 81 333-420 256-343 (381)
154 PF05159 Capsule_synth: Capsul 94.0 0.38 8.3E-06 44.6 9.4 102 276-380 115-226 (269)
155 PF08660 Alg14: Oligosaccharid 93.6 0.58 1.3E-05 39.9 8.9 115 17-144 2-131 (170)
156 PLN03063 alpha,alpha-trehalose 93.5 0.63 1.4E-05 50.1 11.0 106 340-460 362-478 (797)
157 COG0496 SurE Predicted acid ph 93.5 1.7 3.7E-05 39.3 12.0 113 14-144 1-127 (252)
158 TIGR02919 accessory Sec system 93.5 1.2 2.6E-05 44.3 12.3 140 277-437 282-427 (438)
159 PRK13932 stationary phase surv 93.4 2.4 5.2E-05 38.6 13.1 116 12-142 4-133 (257)
160 PF04464 Glyphos_transf: CDP-G 93.2 0.17 3.8E-06 49.3 6.0 141 296-453 219-367 (369)
161 PRK13933 stationary phase surv 92.8 3.1 6.8E-05 37.9 12.8 115 14-143 1-130 (253)
162 TIGR00087 surE 5'/3'-nucleotid 92.0 4.3 9.3E-05 36.9 12.7 114 14-142 1-128 (244)
163 PRK13935 stationary phase surv 92.0 4.3 9.3E-05 37.0 12.7 114 14-142 1-128 (253)
164 PF12000 Glyco_trans_4_3: Gkyc 92.0 1.6 3.4E-05 37.2 9.2 93 39-142 1-96 (171)
165 PRK14501 putative bifunctional 91.9 1.4 3.1E-05 47.2 11.2 113 336-460 344-463 (726)
166 PRK13934 stationary phase surv 91.1 5.7 0.00012 36.4 12.4 111 14-142 1-127 (266)
167 PRK00346 surE 5'(3')-nucleotid 91.0 6.3 0.00014 35.9 12.7 110 14-142 1-124 (250)
168 PF13439 Glyco_transf_4: Glyco 90.9 3.8 8.1E-05 34.4 11.0 35 23-57 11-45 (177)
169 cd02067 B12-binding B12 bindin 90.9 1.3 2.8E-05 35.2 7.5 42 15-56 1-42 (119)
170 PF01075 Glyco_transf_9: Glyco 90.6 0.43 9.3E-06 43.5 5.0 98 276-378 103-208 (247)
171 PRK02261 methylaspartate mutas 90.1 1.2 2.6E-05 36.4 6.7 60 12-71 2-61 (137)
172 cd03793 GT1_Glycogen_synthase_ 90.1 0.91 2E-05 46.2 7.0 73 343-420 467-553 (590)
173 COG0003 ArsA Predicted ATPase 89.8 2.5 5.4E-05 40.1 9.4 43 14-56 2-45 (322)
174 PF02374 ArsA_ATPase: Anion-tr 89.8 0.36 7.9E-06 45.5 3.8 41 14-54 1-42 (305)
175 COG4394 Uncharacterized protei 89.4 3.9 8.5E-05 37.3 9.7 48 335-389 239-291 (370)
176 COG4370 Uncharacterized protei 89.3 2.4 5.1E-05 39.1 8.3 91 334-430 294-387 (412)
177 TIGR00715 precor6x_red precorr 89.3 3.6 7.9E-05 37.7 9.8 38 14-56 1-38 (256)
178 KOG2941 Beta-1,4-mannosyltrans 89.0 21 0.00046 33.8 25.8 146 276-432 252-423 (444)
179 COG1618 Predicted nucleotide k 87.1 0.89 1.9E-05 37.9 3.9 57 12-72 4-60 (179)
180 TIGR02398 gluc_glyc_Psyn gluco 87.0 14 0.0003 37.4 13.0 109 336-460 364-483 (487)
181 PF00731 AIRC: AIR carboxylase 86.9 14 0.00031 30.6 10.9 137 279-438 1-148 (150)
182 PF02951 GSH-S_N: Prokaryotic 86.6 1.3 2.9E-05 35.1 4.5 39 14-52 1-42 (119)
183 PRK13931 stationary phase surv 86.5 21 0.00045 32.8 12.9 112 14-142 1-129 (261)
184 PF07429 Glyco_transf_56: 4-al 86.1 18 0.00039 34.4 12.3 80 334-418 245-332 (360)
185 cd01425 RPS2 Ribosomal protein 84.5 4.6 0.0001 35.3 7.5 118 25-144 40-160 (193)
186 PRK02797 4-alpha-L-fucosyltran 84.5 15 0.00032 34.4 10.8 78 334-416 206-291 (322)
187 COG2894 MinD Septum formation 83.7 5.1 0.00011 35.3 7.0 43 14-56 2-46 (272)
188 PF02441 Flavoprotein: Flavopr 82.9 1.6 3.4E-05 35.4 3.6 43 14-57 1-43 (129)
189 KOG1250 Threonine/serine dehyd 82.5 49 0.0011 32.1 14.2 66 352-420 244-317 (457)
190 PRK08057 cobalt-precorrin-6x r 81.4 15 0.00033 33.4 9.8 37 13-54 2-38 (248)
191 cd02070 corrinoid_protein_B12- 81.3 8.7 0.00019 33.8 8.1 59 13-71 82-140 (201)
192 TIGR02370 pyl_corrinoid methyl 80.9 6.5 0.00014 34.5 7.0 60 12-71 83-142 (197)
193 PF02571 CbiJ: Precorrin-6x re 80.3 7.1 0.00015 35.6 7.2 30 14-49 1-30 (249)
194 TIGR00708 cobA cob(I)alamin ad 79.8 19 0.0004 30.8 9.1 96 15-124 7-108 (173)
195 PRK06718 precorrin-2 dehydroge 78.2 9.4 0.0002 33.6 7.2 143 276-439 9-165 (202)
196 cd00561 CobA_CobO_BtuR ATP:cor 77.5 29 0.00062 29.2 9.5 96 16-124 5-106 (159)
197 cd00550 ArsA_ATPase Oxyanion-t 77.5 10 0.00022 34.8 7.5 36 17-52 4-39 (254)
198 PF12146 Hydrolase_4: Putative 76.1 7.8 0.00017 28.2 5.1 35 14-48 16-50 (79)
199 PRK05986 cob(I)alamin adenolsy 75.9 36 0.00079 29.6 9.9 99 13-124 22-126 (191)
200 KOG1387 Glycosyltransferase [C 75.6 77 0.0017 30.3 21.1 353 23-439 56-446 (465)
201 COG0052 RpsB Ribosomal protein 74.7 19 0.00041 32.4 7.9 31 113-144 157-189 (252)
202 PF06564 YhjQ: YhjQ protein; 74.0 39 0.00085 30.6 10.0 36 15-50 3-39 (243)
203 cd02071 MM_CoA_mut_B12_BD meth 73.9 8.1 0.00018 30.8 5.2 42 15-56 1-42 (122)
204 PF04413 Glycos_transf_N: 3-De 73.7 5.3 0.00012 34.6 4.4 100 15-142 22-126 (186)
205 smart00851 MGS MGS-like domain 73.7 20 0.00044 26.6 7.0 79 30-138 2-89 (90)
206 PRK05973 replicative DNA helic 73.6 9.9 0.00022 34.3 6.2 42 16-57 67-108 (237)
207 TIGR01470 cysG_Nterm siroheme 73.6 12 0.00025 33.1 6.6 145 277-439 9-165 (205)
208 cd07038 TPP_PYR_PDC_IPDC_like 73.0 14 0.00031 31.1 6.8 28 353-380 60-93 (162)
209 PF02844 GARS_N: Phosphoribosy 72.7 22 0.00048 27.2 6.9 22 14-40 1-22 (100)
210 cd07039 TPP_PYR_POX Pyrimidine 72.1 24 0.00052 29.8 7.9 25 355-379 66-96 (164)
211 COG2910 Putative NADH-flavin r 71.9 4.6 0.0001 34.5 3.3 34 14-52 1-35 (211)
212 PF04127 DFP: DNA / pantothena 71.8 3.1 6.8E-05 36.0 2.4 38 14-51 4-53 (185)
213 PRK14098 glycogen synthase; Pr 70.8 7 0.00015 39.7 5.1 41 10-50 2-48 (489)
214 PRK02155 ppnK NAD(+)/NADH kina 70.6 27 0.00059 32.7 8.6 96 293-419 20-119 (291)
215 PRK08305 spoVFB dipicolinate s 70.5 5.4 0.00012 34.8 3.6 45 13-57 5-49 (196)
216 TIGR03837 efp_adjacent_2 conse 69.5 60 0.0013 31.3 10.5 48 335-389 243-295 (371)
217 PRK12311 rpsB 30S ribosomal pr 69.1 9.4 0.0002 36.2 5.1 31 114-144 153-185 (326)
218 PRK06732 phosphopantothenate-- 68.9 11 0.00024 34.0 5.4 31 18-50 19-49 (229)
219 PRK08506 replicative DNA helic 67.6 18 0.00038 36.6 7.2 126 16-143 195-351 (472)
220 COG1663 LpxK Tetraacyldisaccha 67.5 16 0.00035 34.6 6.2 35 19-53 55-89 (336)
221 PRK05920 aromatic acid decarbo 67.1 6.5 0.00014 34.6 3.5 45 12-57 2-46 (204)
222 TIGR02195 heptsyl_trn_II lipop 67.0 37 0.00081 32.4 9.1 99 15-143 176-279 (334)
223 PRK13982 bifunctional SbtC-lik 67.0 13 0.00028 37.4 5.8 42 11-52 254-307 (475)
224 cd02069 methionine_synthase_B1 66.2 22 0.00048 31.6 6.7 46 12-57 87-132 (213)
225 PRK01077 cobyrinic acid a,c-di 66.0 38 0.00081 34.1 9.1 108 14-144 4-124 (451)
226 PRK13789 phosphoribosylamine-- 65.9 21 0.00046 35.5 7.3 35 13-52 4-38 (426)
227 TIGR00347 bioD dethiobiotin sy 65.9 20 0.00043 30.2 6.2 27 21-47 6-32 (166)
228 PLN03064 alpha,alpha-trehalose 65.4 82 0.0018 34.8 11.9 105 340-460 446-562 (934)
229 PF09314 DUF1972: Domain of un 65.4 91 0.002 27.0 10.9 45 25-71 17-62 (185)
230 PRK06079 enoyl-(acyl carrier p 65.2 25 0.00054 32.0 7.2 33 15-49 8-41 (252)
231 COG1703 ArgK Putative periplas 64.4 34 0.00074 31.9 7.5 43 12-54 49-92 (323)
232 COG2099 CobK Precorrin-6x redu 64.4 62 0.0013 29.4 9.0 93 12-140 1-99 (257)
233 PF05014 Nuc_deoxyrib_tr: Nucl 64.4 9.4 0.0002 29.9 3.7 91 281-382 1-99 (113)
234 PF02142 MGS: MGS-like domain 64.2 9.9 0.00021 28.7 3.6 84 30-138 2-94 (95)
235 PRK07313 phosphopantothenoylcy 63.9 8.3 0.00018 33.3 3.5 43 14-57 2-44 (182)
236 PF02310 B12-binding: B12 bind 63.6 15 0.00032 28.9 4.8 37 15-51 2-38 (121)
237 COG2185 Sbm Methylmalonyl-CoA 63.3 13 0.00027 30.5 4.1 41 11-51 10-50 (143)
238 PLN02470 acetolactate synthase 63.1 14 0.00031 38.5 5.8 92 284-379 2-109 (585)
239 PRK05632 phosphate acetyltrans 63.0 79 0.0017 33.8 11.2 35 15-49 4-39 (684)
240 TIGR00725 conserved hypothetic 62.8 57 0.0012 27.4 8.3 100 265-381 20-124 (159)
241 PF00862 Sucrose_synth: Sucros 62.4 12 0.00026 37.4 4.5 115 24-144 296-434 (550)
242 KOG1111 N-acetylglucosaminyltr 62.3 29 0.00063 33.2 6.8 83 292-377 209-300 (426)
243 PRK06904 replicative DNA helic 62.0 35 0.00075 34.5 8.0 127 16-143 224-383 (472)
244 COG1087 GalE UDP-glucose 4-epi 61.9 1.4E+02 0.0031 28.0 12.5 30 14-49 1-32 (329)
245 TIGR03600 phage_DnaB phage rep 61.6 29 0.00063 34.5 7.4 42 16-57 197-239 (421)
246 COG0541 Ffh Signal recognition 61.4 30 0.00064 34.1 6.9 58 13-70 100-161 (451)
247 cd01423 MGS_CPS_I_III Methylgl 61.2 43 0.00093 26.3 6.9 93 18-138 4-105 (116)
248 cd07035 TPP_PYR_POX_like Pyrim 61.0 29 0.00064 28.7 6.3 25 356-380 63-93 (155)
249 PF13460 NAD_binding_10: NADH( 60.9 1E+02 0.0022 26.0 10.2 88 21-144 4-99 (183)
250 KOG0853 Glycosyltransferase [C 60.9 5.4 0.00012 39.9 2.0 59 364-431 381-442 (495)
251 PF10649 DUF2478: Protein of u 60.9 1E+02 0.0022 25.9 9.3 113 18-144 3-133 (159)
252 PRK08006 replicative DNA helic 60.4 41 0.00089 34.0 8.2 126 16-143 227-385 (471)
253 TIGR00640 acid_CoA_mut_C methy 60.1 27 0.00058 28.3 5.6 59 13-71 2-60 (132)
254 PLN02929 NADH kinase 59.9 41 0.0009 31.6 7.5 97 292-419 32-137 (301)
255 TIGR00345 arsA arsenite-activa 59.7 29 0.00063 32.4 6.6 24 31-54 3-26 (284)
256 PRK08309 short chain dehydroge 59.7 54 0.0012 28.1 7.8 20 31-50 13-32 (177)
257 PRK10867 signal recognition pa 59.3 63 0.0014 32.2 9.1 42 15-56 102-144 (433)
258 PRK06029 3-octaprenyl-4-hydrox 57.6 12 0.00025 32.5 3.2 44 13-57 1-45 (185)
259 PF07015 VirC1: VirC1 protein; 57.2 23 0.00049 31.8 5.0 42 16-57 4-46 (231)
260 TIGR01501 MthylAspMutase methy 57.0 37 0.0008 27.6 5.9 58 14-71 2-59 (134)
261 cd07037 TPP_PYR_MenD Pyrimidin 56.6 22 0.00049 30.0 4.8 25 356-380 64-94 (162)
262 COG4221 Short-chain alcohol de 56.4 49 0.0011 29.9 7.0 84 15-123 7-91 (246)
263 cd00984 DnaB_C DnaB helicase C 56.4 52 0.0011 29.6 7.7 42 16-57 16-58 (242)
264 PRK01231 ppnK inorganic polyph 56.4 75 0.0016 29.9 8.7 96 293-419 19-118 (295)
265 PF06506 PrpR_N: Propionate ca 56.1 52 0.0011 28.1 7.1 111 25-144 17-153 (176)
266 COG2109 BtuR ATP:corrinoid ade 56.1 1.3E+02 0.0027 26.2 9.0 97 16-124 31-133 (198)
267 TIGR03609 S_layer_CsaB polysac 56.0 94 0.002 29.1 9.5 111 278-397 172-290 (298)
268 PRK04885 ppnK inorganic polyph 55.9 21 0.00045 32.9 4.8 53 350-419 35-93 (265)
269 PRK08840 replicative DNA helic 55.8 52 0.0011 33.2 8.0 126 16-143 220-378 (464)
270 CHL00072 chlL photochlorophyll 55.6 21 0.00045 33.5 4.9 39 14-52 1-39 (290)
271 TIGR02852 spore_dpaB dipicolin 55.5 16 0.00034 31.7 3.7 40 15-54 2-41 (187)
272 COG1171 IlvA Threonine dehydra 55.4 2E+02 0.0043 27.7 11.9 23 122-144 85-107 (347)
273 PRK05595 replicative DNA helic 55.1 37 0.00081 34.0 6.9 42 16-57 204-246 (444)
274 COG1484 DnaC DNA replication p 55.0 14 0.00031 33.8 3.6 45 13-57 105-149 (254)
275 PRK09620 hypothetical protein; 54.9 31 0.00068 31.0 5.7 20 31-50 33-52 (229)
276 PF08323 Glyco_transf_5: Starc 54.8 16 0.00034 33.3 3.8 27 25-51 17-43 (245)
277 PF02776 TPP_enzyme_N: Thiamin 54.2 32 0.0007 29.2 5.5 30 349-380 63-98 (172)
278 COG1748 LYS9 Saccharopine dehy 54.1 54 0.0012 32.0 7.5 53 13-71 1-55 (389)
279 PRK11914 diacylglycerol kinase 53.9 39 0.00084 31.9 6.5 81 280-380 12-96 (306)
280 KOG2380 Prephenate dehydrogena 53.8 15 0.00033 34.6 3.5 120 12-142 51-189 (480)
281 PRK14077 pnk inorganic polypho 53.7 27 0.00058 32.7 5.2 57 346-419 60-120 (287)
282 cd01424 MGS_CPS_II Methylglyox 53.6 70 0.0015 24.7 6.9 84 25-139 10-100 (110)
283 PRK08155 acetolactate synthase 53.5 35 0.00075 35.5 6.6 80 294-379 14-109 (564)
284 COG0859 RfaF ADP-heptose:LPS h 52.2 92 0.002 29.8 8.9 100 14-144 176-280 (334)
285 PRK05647 purN phosphoribosylgl 52.2 67 0.0015 28.2 7.2 56 13-71 1-58 (200)
286 COG1763 MobB Molybdopterin-gua 52.2 29 0.00063 29.2 4.7 40 13-52 1-41 (161)
287 PRK03708 ppnK inorganic polyph 52.1 20 0.00044 33.3 4.1 53 350-419 57-112 (277)
288 PF02606 LpxK: Tetraacyldisacc 52.1 2.2E+02 0.0048 27.2 17.0 34 19-52 43-76 (326)
289 cd02032 Bchl_like This family 52.0 23 0.00051 32.5 4.6 37 14-50 1-37 (267)
290 PRK00784 cobyric acid synthase 51.8 61 0.0013 33.0 7.9 34 16-49 5-39 (488)
291 PF01210 NAD_Gly3P_dh_N: NAD-d 51.8 11 0.00023 31.6 2.1 32 15-51 1-32 (157)
292 PRK05784 phosphoribosylamine-- 51.6 73 0.0016 32.4 8.3 32 14-50 1-34 (486)
293 PRK08322 acetolactate synthase 51.5 42 0.00091 34.7 6.8 26 354-379 65-96 (547)
294 PRK03372 ppnK inorganic polyph 51.4 1.1E+02 0.0023 29.0 8.8 57 346-419 68-128 (306)
295 PRK01911 ppnK inorganic polyph 51.1 32 0.00069 32.2 5.3 57 346-419 60-120 (292)
296 PRK13196 pyrrolidone-carboxyla 51.0 31 0.00067 30.6 4.9 27 13-39 1-29 (211)
297 TIGR01425 SRP54_euk signal rec 50.9 1E+02 0.0022 30.6 9.0 39 15-53 102-140 (429)
298 COG1154 Dxs Deoxyxylulose-5-ph 50.3 1.7E+02 0.0038 30.2 10.4 112 276-419 500-624 (627)
299 PRK06321 replicative DNA helic 50.3 75 0.0016 32.1 8.1 42 16-57 229-271 (472)
300 TIGR01281 DPOR_bchL light-inde 50.1 27 0.00058 32.2 4.7 36 14-49 1-36 (268)
301 PRK08760 replicative DNA helic 50.1 52 0.0011 33.4 7.0 42 16-57 232-274 (476)
302 PRK06179 short chain dehydroge 50.0 86 0.0019 28.6 8.1 32 16-50 6-37 (270)
303 PRK02649 ppnK inorganic polyph 49.9 33 0.00071 32.4 5.2 57 346-419 64-124 (305)
304 PF10933 DUF2827: Protein of u 49.8 1.3E+02 0.0028 29.0 8.9 104 334-457 253-363 (364)
305 PRK06276 acetolactate synthase 49.5 34 0.00073 35.8 5.8 26 354-379 65-96 (586)
306 PRK09739 hypothetical protein; 49.2 42 0.00091 29.3 5.6 37 12-48 2-41 (199)
307 COG0801 FolK 7,8-dihydro-6-hyd 49.2 36 0.00079 28.5 4.7 29 280-308 3-31 (160)
308 COG0300 DltE Short-chain dehyd 49.0 58 0.0013 30.0 6.5 84 15-123 7-94 (265)
309 PRK13234 nifH nitrogenase redu 48.6 33 0.00071 32.3 5.0 39 13-51 3-42 (295)
310 cd02037 MRP-like MRP (Multiple 48.5 73 0.0016 26.8 6.8 33 19-51 6-38 (169)
311 cd01980 Chlide_reductase_Y Chl 48.3 53 0.0012 32.6 6.7 32 15-51 282-313 (416)
312 PF00289 CPSase_L_chain: Carba 48.1 73 0.0016 24.8 6.1 69 292-368 10-88 (110)
313 PRK00207 sulfur transfer compl 47.9 44 0.00096 26.9 5.0 39 14-52 1-43 (128)
314 PRK13185 chlL protochlorophyll 47.9 31 0.00068 31.7 4.8 35 15-49 3-38 (270)
315 KOG0832 Mitochondrial/chloropl 47.9 7.7 0.00017 34.2 0.6 123 16-145 82-207 (251)
316 PF01012 ETF: Electron transfe 47.9 57 0.0012 27.4 6.0 108 15-140 1-120 (164)
317 TIGR00173 menD 2-succinyl-5-en 47.2 78 0.0017 31.6 7.8 27 353-379 64-96 (432)
318 PRK04539 ppnK inorganic polyph 47.2 38 0.00082 31.8 5.1 58 345-419 63-124 (296)
319 PF05693 Glycogen_syn: Glycoge 47.1 40 0.00087 34.8 5.5 92 342-436 461-566 (633)
320 PRK05854 short chain dehydroge 46.7 1.1E+02 0.0024 28.9 8.4 33 15-50 15-47 (313)
321 PRK06194 hypothetical protein; 46.2 84 0.0018 29.0 7.5 31 16-49 8-38 (287)
322 PRK11269 glyoxylate carboligas 45.9 55 0.0012 34.2 6.7 24 356-379 72-101 (591)
323 PF06506 PrpR_N: Propionate ca 45.8 16 0.00035 31.3 2.3 31 349-382 33-63 (176)
324 TIGR00379 cobB cobyrinic acid 45.5 1.2E+02 0.0025 30.6 8.7 106 16-144 2-120 (449)
325 TIGR02113 coaC_strep phosphopa 45.4 24 0.00052 30.3 3.3 42 15-57 2-43 (177)
326 KOG3339 Predicted glycosyltran 45.4 1.6E+02 0.0034 25.4 7.8 32 8-40 33-64 (211)
327 TIGR00661 MJ1255 conserved hyp 44.9 47 0.001 31.5 5.6 28 350-379 93-120 (321)
328 PRK03378 ppnK inorganic polyph 44.7 44 0.00094 31.4 5.1 57 346-419 59-119 (292)
329 PRK06249 2-dehydropantoate 2-r 44.5 33 0.00072 32.5 4.5 48 12-69 4-51 (313)
330 PRK05693 short chain dehydroge 44.5 55 0.0012 30.0 5.9 33 15-50 2-34 (274)
331 PRK12315 1-deoxy-D-xylulose-5- 44.4 1.7E+02 0.0037 30.5 9.9 52 358-417 524-580 (581)
332 PRK02645 ppnK inorganic polyph 44.3 65 0.0014 30.5 6.3 67 294-380 19-89 (305)
333 COG2874 FlaH Predicted ATPases 44.0 1.3E+02 0.0028 26.8 7.4 37 17-53 32-68 (235)
334 cd01421 IMPCH Inosine monophos 44.0 79 0.0017 27.3 6.1 38 28-71 11-48 (187)
335 PF01075 Glyco_transf_9: Glyco 43.5 69 0.0015 28.9 6.3 100 13-144 105-212 (247)
336 PRK06849 hypothetical protein; 43.4 46 0.00099 32.6 5.4 35 13-51 4-38 (389)
337 PRK03501 ppnK inorganic polyph 43.2 52 0.0011 30.3 5.3 54 350-419 39-97 (264)
338 PRK07710 acetolactate synthase 42.8 57 0.0012 33.9 6.3 28 350-379 78-111 (571)
339 TIGR00421 ubiX_pad polyprenyl 42.8 21 0.00045 30.8 2.5 42 15-57 1-42 (181)
340 PF06925 MGDG_synth: Monogalac 42.8 58 0.0013 27.5 5.3 22 26-47 1-23 (169)
341 PRK10916 ADP-heptose:LPS hepto 42.8 74 0.0016 30.6 6.7 102 15-142 182-288 (348)
342 TIGR03646 YtoQ_fam YtoQ family 42.7 1.8E+02 0.0039 23.5 7.9 117 292-417 10-143 (144)
343 PRK13059 putative lipid kinase 42.5 71 0.0015 29.9 6.3 67 293-380 18-90 (295)
344 PLN00016 RNA-binding protein; 42.3 33 0.00072 33.4 4.2 37 13-51 52-90 (378)
345 PRK10416 signal recognition pa 42.2 1.6E+02 0.0034 28.1 8.5 39 15-53 116-154 (318)
346 PRK03767 NAD(P)H:quinone oxido 42.2 47 0.001 29.1 4.7 37 14-50 2-40 (200)
347 TIGR02700 flavo_MJ0208 archaeo 42.1 31 0.00066 31.2 3.6 42 16-57 2-45 (234)
348 PRK13055 putative lipid kinase 42.1 90 0.0019 29.9 7.0 81 280-380 6-93 (334)
349 COG1797 CobB Cobyrinic acid a, 42.1 26 0.00057 34.4 3.3 32 15-46 2-34 (451)
350 PF07905 PucR: Purine cataboli 41.9 1.5E+02 0.0032 23.5 7.2 57 266-326 34-91 (123)
351 PF02572 CobA_CobO_BtuR: ATP:c 41.7 93 0.002 26.6 6.2 100 15-124 5-107 (172)
352 PRK12743 oxidoreductase; Provi 41.7 1.1E+02 0.0025 27.5 7.5 32 15-49 3-34 (256)
353 PRK13973 thymidylate kinase; P 41.6 2.1E+02 0.0045 25.3 8.8 36 16-51 6-41 (213)
354 PRK06841 short chain dehydroge 41.4 89 0.0019 28.1 6.8 34 14-51 16-49 (255)
355 TIGR00665 DnaB replicative DNA 41.0 1E+02 0.0022 30.8 7.5 42 16-57 198-240 (434)
356 COG1066 Sms Predicted ATP-depe 40.9 32 0.0007 33.6 3.6 41 16-57 96-136 (456)
357 TIGR02329 propionate_PrpR prop 40.9 1.6E+02 0.0035 30.3 8.9 110 25-143 37-172 (526)
358 PRK07206 hypothetical protein; 40.9 1.1E+02 0.0024 30.2 7.8 33 14-51 3-35 (416)
359 PRK07004 replicative DNA helic 40.8 1.1E+02 0.0024 30.9 7.6 42 16-57 216-258 (460)
360 TIGR00118 acolac_lg acetolacta 40.8 94 0.002 32.2 7.5 25 355-379 67-97 (558)
361 cd02040 NifH NifH gene encodes 40.7 47 0.001 30.5 4.8 37 15-51 3-39 (270)
362 TIGR00730 conserved hypothetic 40.7 2E+02 0.0044 24.6 8.2 102 265-379 21-133 (178)
363 COG0240 GpsA Glycerol-3-phosph 40.7 56 0.0012 31.0 5.1 34 13-51 1-34 (329)
364 PRK11199 tyrA bifunctional cho 40.6 1E+02 0.0022 30.1 7.2 33 13-50 98-131 (374)
365 PRK13337 putative lipid kinase 40.5 1.2E+02 0.0027 28.4 7.7 29 350-380 57-91 (304)
366 PRK05579 bifunctional phosphop 40.5 3.3E+02 0.0071 26.9 10.7 135 277-418 6-182 (399)
367 COG0496 SurE Predicted acid ph 40.4 1.8E+02 0.004 26.5 8.1 84 293-381 13-126 (252)
368 cd01452 VWA_26S_proteasome_sub 40.4 1.6E+02 0.0036 25.5 7.6 61 13-73 107-175 (187)
369 PRK13057 putative lipid kinase 40.3 1.2E+02 0.0026 28.2 7.5 66 294-380 13-82 (287)
370 cd01965 Nitrogenase_MoFe_beta_ 40.3 2.6E+02 0.0057 27.8 10.3 24 114-140 372-395 (428)
371 PRK12921 2-dehydropantoate 2-r 40.2 34 0.00074 32.1 3.8 39 14-57 1-39 (305)
372 TIGR00959 ffh signal recogniti 39.9 1.7E+02 0.0037 29.2 8.6 41 15-55 101-142 (428)
373 KOG0780 Signal recognition par 39.8 65 0.0014 31.3 5.3 43 14-56 102-144 (483)
374 PRK08589 short chain dehydroge 39.8 86 0.0019 28.7 6.4 33 15-50 7-39 (272)
375 TIGR00750 lao LAO/AO transport 39.7 1.8E+02 0.0039 27.3 8.6 40 14-53 35-74 (300)
376 PRK05636 replicative DNA helic 39.6 52 0.0011 33.6 5.2 124 16-143 268-424 (505)
377 PRK12342 hypothetical protein; 39.5 54 0.0012 30.0 4.8 30 114-143 110-145 (254)
378 PRK05858 hypothetical protein; 39.4 1E+02 0.0022 31.8 7.5 24 356-379 71-100 (542)
379 PRK13230 nitrogenase reductase 39.2 53 0.0012 30.4 4.9 37 15-51 3-39 (279)
380 cd01715 ETF_alpha The electron 39.1 1.6E+02 0.0035 24.8 7.5 29 114-142 84-115 (168)
381 PRK13236 nitrogenase reductase 39.1 62 0.0013 30.4 5.3 41 13-53 5-46 (296)
382 COG0297 GlgA Glycogen synthase 39.0 4.4E+02 0.0095 26.9 14.6 135 278-417 293-440 (487)
383 PF01695 IstB_IS21: IstB-like 38.9 30 0.00065 29.7 2.9 45 13-57 47-91 (178)
384 TIGR01011 rpsB_bact ribosomal 38.7 90 0.002 28.0 6.0 31 114-144 156-188 (225)
385 PRK04946 hypothetical protein; 38.4 19 0.00042 30.9 1.6 58 294-365 110-168 (181)
386 PRK07236 hypothetical protein; 38.4 38 0.00082 33.1 3.9 38 8-50 1-38 (386)
387 PRK05299 rpsB 30S ribosomal pr 38.3 89 0.0019 28.7 6.0 31 114-144 158-190 (258)
388 PRK07773 replicative DNA helic 38.2 1E+02 0.0022 34.1 7.5 126 16-144 220-377 (886)
389 COG0287 TyrA Prephenate dehydr 38.2 2.3E+02 0.0049 26.4 8.7 40 13-57 3-42 (279)
390 PRK01185 ppnK inorganic polyph 38.1 59 0.0013 30.1 4.9 53 350-419 52-105 (271)
391 PRK05579 bifunctional phosphop 38.1 37 0.0008 33.5 3.7 45 12-57 5-49 (399)
392 COG1887 TagB Putative glycosyl 38.1 2.4E+02 0.0052 27.7 9.3 99 338-450 274-381 (388)
393 cd02034 CooC The accessory pro 38.0 74 0.0016 25.0 4.8 37 15-51 1-37 (116)
394 PRK06463 fabG 3-ketoacyl-(acyl 37.8 1.2E+02 0.0026 27.3 7.0 32 15-49 8-39 (255)
395 COG4088 Predicted nucleotide k 37.6 45 0.00099 29.4 3.7 36 15-50 3-38 (261)
396 TIGR00041 DTMP_kinase thymidyl 37.5 2.6E+02 0.0057 23.9 9.1 38 14-51 4-41 (195)
397 PRK06756 flavodoxin; Provision 37.5 62 0.0014 26.6 4.6 37 13-49 1-38 (148)
398 PRK06456 acetolactate synthase 37.5 87 0.0019 32.6 6.6 24 356-379 72-101 (572)
399 PRK07313 phosphopantothenoylcy 37.4 2.7E+02 0.0058 24.0 11.0 48 369-417 108-178 (182)
400 cd03146 GAT1_Peptidase_E Type 37.2 2.4E+02 0.0052 24.9 8.5 47 265-313 17-66 (212)
401 PRK09165 replicative DNA helic 37.2 1.4E+02 0.003 30.5 7.8 42 16-57 220-276 (497)
402 PRK06523 short chain dehydroge 37.2 2.1E+02 0.0046 25.7 8.6 20 31-50 23-42 (260)
403 PRK12823 benD 1,6-dihydroxycyc 37.0 90 0.002 28.2 6.1 33 15-50 9-41 (260)
404 PRK06522 2-dehydropantoate 2-r 36.9 33 0.00071 32.2 3.1 31 14-49 1-31 (304)
405 TIGR02015 BchY chlorophyllide 36.7 1.4E+02 0.0029 29.8 7.5 31 15-50 287-317 (422)
406 PRK08199 thiamine pyrophosphat 36.6 1.3E+02 0.0027 31.3 7.6 26 354-379 73-104 (557)
407 PRK11519 tyrosine kinase; Prov 36.6 5.8E+02 0.012 27.5 12.9 40 13-52 525-566 (719)
408 PRK07449 2-succinyl-5-enolpyru 36.6 66 0.0014 33.4 5.6 81 293-379 9-105 (568)
409 cd03789 GT1_LPS_heptosyltransf 36.4 1.1E+02 0.0025 28.1 6.7 87 28-143 140-226 (279)
410 COG2120 Uncharacterized protei 36.3 66 0.0014 29.1 4.8 42 8-49 5-46 (237)
411 PRK06182 short chain dehydroge 36.2 1.2E+02 0.0025 27.8 6.7 32 16-50 5-36 (273)
412 TIGR00147 lipid kinase, YegS/R 36.2 1.6E+02 0.0034 27.5 7.6 69 292-380 17-91 (293)
413 PRK04761 ppnK inorganic polyph 36.2 29 0.00062 31.6 2.4 28 350-379 25-56 (246)
414 COG2861 Uncharacterized protei 36.0 2.3E+02 0.0049 25.6 7.8 38 98-139 138-178 (250)
415 PF06032 DUF917: Protein of un 36.0 33 0.00072 33.1 3.0 103 18-139 15-121 (353)
416 PRK05920 aromatic acid decarbo 35.9 2.7E+02 0.0058 24.6 8.3 35 367-402 125-163 (204)
417 PRK13194 pyrrolidone-carboxyla 35.8 66 0.0014 28.4 4.6 26 14-39 1-28 (208)
418 cd04299 GT1_Glycogen_Phosphory 35.7 3.4E+02 0.0074 29.5 10.6 115 332-456 545-686 (778)
419 cd02072 Glm_B12_BD B12 binding 35.6 1.1E+02 0.0023 24.7 5.3 57 15-71 1-57 (128)
420 PF03853 YjeF_N: YjeF-related 35.4 76 0.0016 26.9 4.8 37 11-48 23-59 (169)
421 PF15092 UPF0728: Uncharacteri 35.3 1.2E+02 0.0025 22.4 4.9 38 15-52 8-49 (88)
422 TIGR02655 circ_KaiC circadian 35.3 33 0.00071 34.9 3.0 43 15-57 265-307 (484)
423 PRK03359 putative electron tra 35.3 70 0.0015 29.3 4.8 30 114-143 113-148 (256)
424 PF11071 DUF2872: Protein of u 35.3 2.4E+02 0.0052 22.8 7.4 67 344-417 66-140 (141)
425 cd01985 ETF The electron trans 35.3 2.2E+02 0.0048 24.2 7.8 26 114-139 92-120 (181)
426 PRK13768 GTPase; Provisional 35.2 1.6E+02 0.0035 26.8 7.3 37 16-52 5-41 (253)
427 cd00861 ProRS_anticodon_short 35.2 97 0.0021 22.8 5.0 55 15-70 3-60 (94)
428 PF02702 KdpD: Osmosensitive K 35.2 63 0.0014 28.3 4.2 40 13-52 5-44 (211)
429 PRK10353 3-methyl-adenine DNA 35.1 2.2E+02 0.0047 24.7 7.4 72 379-453 24-119 (187)
430 PF02826 2-Hacid_dh_C: D-isome 34.9 51 0.0011 28.2 3.8 102 276-414 35-142 (178)
431 PRK06719 precorrin-2 dehydroge 34.7 55 0.0012 27.4 3.8 34 12-50 12-45 (157)
432 PF10083 DUF2321: Uncharacteri 34.5 1.1E+02 0.0023 25.5 5.1 78 369-457 72-149 (158)
433 PRK13054 lipid kinase; Reviewe 34.4 1.3E+02 0.0029 28.2 6.8 67 294-380 18-92 (300)
434 PRK13278 purP 5-formaminoimida 34.4 2.7E+02 0.0059 27.0 8.9 119 266-398 5-137 (358)
435 TIGR02201 heptsyl_trn_III lipo 34.3 3E+02 0.0066 26.2 9.5 99 15-142 183-287 (344)
436 PF04244 DPRP: Deoxyribodipyri 34.3 38 0.00082 30.3 2.9 25 26-50 47-71 (224)
437 PLN02891 IMP cyclohydrolase 34.2 2.8E+02 0.006 28.4 8.9 51 11-71 20-70 (547)
438 TIGR02699 archaeo_AfpA archaeo 34.0 42 0.00091 28.7 3.0 41 16-57 2-44 (174)
439 PRK06180 short chain dehydroge 33.6 1.5E+02 0.0032 27.2 7.0 33 15-50 5-37 (277)
440 TIGR00521 coaBC_dfp phosphopan 33.6 41 0.00089 33.0 3.2 44 13-57 3-46 (390)
441 cd01983 Fer4_NifH The Fer4_Nif 33.5 95 0.0021 22.5 4.8 33 16-48 2-34 (99)
442 PRK13193 pyrrolidone-carboxyla 33.5 78 0.0017 28.0 4.7 26 14-39 1-28 (209)
443 PRK06171 sorbitol-6-phosphate 33.3 1.9E+02 0.004 26.3 7.5 33 15-50 10-42 (266)
444 PLN02935 Bifunctional NADH kin 33.3 66 0.0014 32.5 4.6 56 347-420 259-319 (508)
445 PRK08229 2-dehydropantoate 2-r 33.2 40 0.00086 32.3 3.1 40 13-57 2-41 (341)
446 PRK06395 phosphoribosylamine-- 32.9 2.1E+02 0.0046 28.6 8.2 32 13-49 2-33 (435)
447 PRK06114 short chain dehydroge 32.8 2.1E+02 0.0046 25.7 7.8 33 15-50 9-41 (254)
448 COG1435 Tdk Thymidine kinase [ 32.7 3.4E+02 0.0074 23.8 9.9 104 14-140 4-116 (201)
449 PRK06835 DNA replication prote 32.4 47 0.001 31.7 3.4 44 14-57 184-227 (329)
450 PF05225 HTH_psq: helix-turn-h 32.4 78 0.0017 20.1 3.3 27 405-433 1-27 (45)
451 CHL00194 ycf39 Ycf39; Provisio 32.3 71 0.0015 30.2 4.6 33 14-50 1-33 (317)
452 TIGR00355 purH phosphoribosyla 32.2 1.2E+02 0.0026 30.7 6.1 38 28-71 11-48 (511)
453 PRK05282 (alpha)-aspartyl dipe 32.1 3.4E+02 0.0074 24.5 8.6 46 266-313 22-67 (233)
454 COG1553 DsrE Uncharacterized c 32.0 1.3E+02 0.0027 24.1 5.0 36 14-49 1-40 (126)
455 COG1698 Uncharacterized protei 32.0 1.6E+02 0.0036 21.8 5.2 46 408-456 17-63 (93)
456 PRK13235 nifH nitrogenase redu 31.9 76 0.0016 29.3 4.7 35 15-49 3-37 (274)
457 cd01121 Sms Sms (bacterial rad 31.9 99 0.0021 30.2 5.5 41 16-56 85-125 (372)
458 PRK06935 2-deoxy-D-gluconate 3 31.8 97 0.0021 28.0 5.4 33 15-50 16-48 (258)
459 PRK13604 luxD acyl transferase 31.8 96 0.0021 29.3 5.2 36 13-48 36-71 (307)
460 PRK10964 ADP-heptose:LPS hepto 31.5 3.1E+02 0.0068 25.8 9.0 83 29-143 198-281 (322)
461 PF03721 UDPG_MGDP_dh_N: UDP-g 31.5 84 0.0018 27.1 4.5 33 14-51 1-33 (185)
462 COG0205 PfkA 6-phosphofructoki 31.4 2.8E+02 0.0061 26.7 8.3 49 266-317 56-104 (347)
463 PRK07109 short chain dehydroge 31.2 2.6E+02 0.0057 26.6 8.4 33 15-50 9-41 (334)
464 CHL00067 rps2 ribosomal protei 31.2 1.8E+02 0.0038 26.2 6.7 31 114-144 162-194 (230)
465 PRK08265 short chain dehydroge 31.2 2E+02 0.0044 26.0 7.4 33 15-50 7-39 (261)
466 PRK08628 short chain dehydroge 31.1 1.5E+02 0.0032 26.8 6.4 33 16-51 9-41 (258)
467 PRK09186 flagellin modificatio 31.1 2.1E+02 0.0045 25.7 7.4 32 15-49 5-36 (256)
468 PF03641 Lysine_decarbox: Poss 31.0 1.8E+02 0.004 23.4 6.2 78 297-379 2-91 (133)
469 PF09001 DUF1890: Domain of un 30.9 38 0.00082 27.4 2.0 33 25-57 11-43 (139)
470 PRK08527 acetolactate synthase 30.7 78 0.0017 32.9 5.0 26 354-379 68-99 (563)
471 PF08357 SEFIR: SEFIR domain; 30.5 62 0.0013 26.6 3.5 32 15-46 2-35 (150)
472 PRK14619 NAD(P)H-dependent gly 30.5 88 0.0019 29.5 4.9 53 13-71 4-56 (308)
473 PRK12936 3-ketoacyl-(acyl-carr 30.4 1.8E+02 0.004 25.7 6.9 19 31-49 20-38 (245)
474 PRK04940 hypothetical protein; 30.3 1.3E+02 0.0028 25.9 5.3 30 115-144 62-92 (180)
475 PRK14494 putative molybdopteri 30.3 90 0.002 28.1 4.6 36 14-49 1-37 (229)
476 PF12695 Abhydrolase_5: Alpha/ 30.3 1.1E+02 0.0024 24.3 5.0 33 17-49 2-34 (145)
477 PRK13869 plasmid-partitioning 30.2 86 0.0019 31.0 4.9 38 13-50 120-159 (405)
478 PRK06731 flhF flagellar biosyn 30.2 4E+02 0.0087 24.6 9.0 41 13-53 75-115 (270)
479 PLN02948 phosphoribosylaminoim 30.0 6.6E+02 0.014 26.2 11.8 142 277-441 409-561 (577)
480 cd02065 B12-binding_like B12 b 29.9 80 0.0017 24.8 3.9 37 16-52 2-38 (125)
481 PF13450 NAD_binding_8: NAD(P) 29.8 65 0.0014 22.4 3.0 21 31-51 9-29 (68)
482 PRK12859 3-ketoacyl-(acyl-carr 29.7 2.1E+02 0.0045 25.8 7.2 18 31-48 22-39 (256)
483 PRK09841 cryptic autophosphory 29.6 4.5E+02 0.0097 28.4 10.5 40 13-52 530-571 (726)
484 TIGR01380 glut_syn glutathione 29.6 73 0.0016 30.2 4.2 40 14-53 1-43 (312)
485 PRK12825 fabG 3-ketoacyl-(acyl 29.6 1.2E+02 0.0025 27.0 5.5 36 11-50 4-39 (249)
486 COG0504 PyrG CTP synthase (UTP 29.5 1E+02 0.0022 31.0 5.0 41 14-54 1-44 (533)
487 PF01372 Melittin: Melittin; 29.4 11 0.00023 20.2 -0.8 17 361-377 1-17 (26)
488 PRK14092 2-amino-4-hydroxy-6-h 29.3 1.2E+02 0.0026 25.6 4.9 32 276-307 5-36 (163)
489 COG0132 BioD Dethiobiotin synt 29.3 87 0.0019 28.0 4.3 37 13-49 1-39 (223)
490 PRK07889 enoyl-(acyl carrier p 29.3 80 0.0017 28.7 4.3 33 15-49 8-41 (256)
491 COG2085 Predicted dinucleotide 29.1 86 0.0019 27.7 4.1 30 22-53 7-36 (211)
492 PRK12361 hypothetical protein; 29.0 3E+02 0.0065 28.5 8.8 29 350-380 297-329 (547)
493 PRK00861 putative lipid kinase 29.0 1.1E+02 0.0024 28.7 5.2 30 349-380 56-89 (300)
494 TIGR02302 aProt_lowcomp conser 28.8 1.6E+02 0.0034 32.2 6.8 58 403-461 473-536 (851)
495 COG3563 KpsC Capsule polysacch 28.7 4.9E+02 0.011 26.3 9.3 84 292-379 165-251 (671)
496 COG0771 MurD UDP-N-acetylmuram 28.7 96 0.0021 31.0 4.9 36 13-53 7-42 (448)
497 PRK02231 ppnK inorganic polyph 28.6 57 0.0012 30.2 3.1 58 344-418 36-97 (272)
498 TIGR03880 KaiC_arch_3 KaiC dom 28.6 1.1E+02 0.0024 27.1 5.1 43 15-57 18-60 (224)
499 PLN03050 pyridoxine (pyridoxam 28.5 1.1E+02 0.0024 27.9 4.9 35 14-49 61-95 (246)
500 cd01840 SGNH_hydrolase_yrhL_li 28.4 2E+02 0.0044 23.5 6.3 39 277-316 50-88 (150)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.8e-64 Score=496.38 Aligned_cols=442 Identities=38% Similarity=0.753 Sum_probs=356.6
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCC-------C---CCCceEEEccCCCCCCCC
Q 012412 10 SCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-------S---SSSIPLEAISDGYDEGGY 79 (464)
Q Consensus 10 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-------~---~~~~~~~~i~~~~~~~~~ 79 (464)
.+...||+++|++++||++|++.||+.|+.+|..|||++++.+...+.+.. . ...+.|..+|+++++ +.
T Consensus 4 ~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~-~~ 82 (480)
T PLN02555 4 ESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE-DD 82 (480)
T ss_pred CCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC-Cc
Confidence 345679999999999999999999999999999999999997665443100 0 112566667777765 33
Q ss_pred CCccCHHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcc
Q 012412 80 AQAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSL 159 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 159 (464)
+...+...++..+.......++++++.+..+.+|++|||+|.+..|+..+|+++|||++.|++++++.+..+.++..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~ 162 (480)
T PLN02555 83 PRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLV 162 (480)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCC
Confidence 32334555666666667777888888765444567999999999999999999999999999999999888877754433
Q ss_pred cCCC---CCCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeee
Q 012412 160 ELPL---TGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRT 236 (464)
Q Consensus 160 ~~p~---~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~ 236 (464)
+.+. .+.++.+|++|.++..+++.+......+......+. +.+....+++++++|||.+||....+.+....+++.
T Consensus 163 ~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v~~ 241 (480)
T PLN02555 163 PFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAIL-GQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPIKP 241 (480)
T ss_pred CcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHH-HHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCEEE
Confidence 3222 123467899998888888876643223334455555 666667788999999999999999988876557999
Q ss_pred ecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcC
Q 012412 237 IGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRE 316 (464)
Q Consensus 237 vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 316 (464)
|||+.+... +.....+...+. .+.++.+||+.++++++|||||||+...+.+++.+++.+++.++++|||++..
T Consensus 242 iGPl~~~~~-----~~~~~~~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~ 315 (480)
T PLN02555 242 VGPLFKMAK-----TPNSDVKGDISK-PADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRP 315 (480)
T ss_pred eCcccCccc-----cccccccccccc-cchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEec
Confidence 999976421 000111222233 24679999999877889999999999899999999999999999999999863
Q ss_pred cc------cCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHH
Q 012412 317 SE------QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKY 390 (464)
Q Consensus 317 ~~------~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r 390 (464)
.. ...+|+++.++ .++|+.+++|+||.++|.|.++++||||||+||++||+++|||||++|++.||+.||++
T Consensus 316 ~~~~~~~~~~~lp~~~~~~--~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 393 (480)
T PLN02555 316 PHKDSGVEPHVLPEEFLEK--AGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVY 393 (480)
T ss_pred CcccccchhhcCChhhhhh--cCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHH
Confidence 21 12477788777 77899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhcceeec------c-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhhc
Q 012412 391 ILDVWKTGLKF------P-IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACSK 461 (464)
Q Consensus 391 l~~~~G~g~~l------~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~~ 461 (464)
+++.||+|+.+ . .++.++|.++|+++|.+++|+++|+||++|++.+++++.+|||+...+++||+++..+.
T Consensus 394 ~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~ 471 (480)
T PLN02555 394 LVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKS 471 (480)
T ss_pred HHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 99988999999 2 57899999999999988888899999999999999999999999999999999998763
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.9e-64 Score=490.02 Aligned_cols=437 Identities=48% Similarity=0.895 Sum_probs=347.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.. ....++++..+|+++++.+.+...++..++..+
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~-~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~ 83 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHL-DPSSPISIATISDGYDQGGFSSAGSVPEYLQNF 83 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhccc-CCCCCEEEEEcCCCCCCcccccccCHHHHHHHH
Confidence 4699999999999999999999999999999999999977655431 112469999999887762223334466677777
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCCC
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPG 172 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~ 172 (464)
...+...++++++.+....+|+||||+|.+..|+..+|+++|||++.|++++++....+.+..... ....+.+|+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~-----~~~~~~~pg 158 (449)
T PLN02173 84 KTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINN-----GSLTLPIKD 158 (449)
T ss_pred HHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhcc-----CCccCCCCC
Confidence 767778888888876543356799999999999999999999999999998887776655432111 112345889
Q ss_pred CCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCccccccccC
Q 012412 173 MPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDKQIED 252 (464)
Q Consensus 173 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~ 252 (464)
+|.++..+++.+.............+. +.+....+++.+++|||++||+...+.+....+++.|||+.+..........
T Consensus 159 ~p~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~ 237 (449)
T PLN02173 159 LPLLELQDLPTFVTPTGSHLAYFEMVL-QQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQIKS 237 (449)
T ss_pred CCCCChhhCChhhcCCCCchHHHHHHH-HHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhccccccc
Confidence 988888888876643222222344454 5556678889999999999999999888765679999999764211100001
Q ss_pred cccccccccc-cchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhcc
Q 012412 253 DKDYGFSMFK-SSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETL 331 (464)
Q Consensus 253 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 331 (464)
....+..+|. ..++++.+||+.++++++|||||||....+.+++.+++.+| .+.+|+|++.......+|+++.++.
T Consensus 238 ~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~~~~lp~~~~~~~- 314 (449)
T PLN02173 238 DNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASEESKLPPGFLETV- 314 (449)
T ss_pred cccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccchhcccchHHHhh-
Confidence 1111122332 22356899999988889999999999989999999999999 5778999997544445788887762
Q ss_pred CCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc--C----cC
Q 012412 332 TSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--I----VK 405 (464)
Q Consensus 332 ~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~--~----~~ 405 (464)
.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+|+.+. + .+
T Consensus 315 ~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~ 394 (449)
T PLN02173 315 DKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAK 394 (449)
T ss_pred cCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCccc
Confidence 26889999999999999999999999999999999999999999999999999999999998778888875 2 58
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012412 406 RDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 459 (464)
Q Consensus 406 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 459 (464)
.++|.++++++|.+++|+++|++|+++++++++++.+||++...+++|++++..
T Consensus 395 ~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~~ 448 (449)
T PLN02173 395 REEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQI 448 (449)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcc
Confidence 999999999999988788999999999999999999999999999999999864
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-62 Score=481.48 Aligned_cols=429 Identities=30% Similarity=0.507 Sum_probs=341.3
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHH
Q 012412 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (464)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (464)
+.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ....++++..+|+++++...+. .....++.
T Consensus 5 ~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~--~~~~~i~~~~ip~glp~~~~~~-~~~~~~~~ 81 (451)
T PLN02410 5 PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS--DDFTDFQFVTIPESLPESDFKN-LGPIEFLH 81 (451)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc--cCCCCeEEEeCCCCCCcccccc-cCHHHHHH
Confidence 35679999999999999999999999999999999999987642111 1123699999998876522222 23445666
Q ss_pred HHHHhCcHHHHHHHHHhcC-CCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhh---cC-c-ccCCC-
Q 012412 91 RFWQIGPQTLTELVEKMNG-SDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVK---KG-S-LELPL- 163 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~l~~-~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~---~~-~-~~~p~- 163 (464)
.+...+...++++++++.. ...|++|||+|.+..|+..+|+++|||++.|++++++.+.++.++. .. . .+.+.
T Consensus 82 ~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~ 161 (451)
T PLN02410 82 KLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEP 161 (451)
T ss_pred HHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcccc
Confidence 6665667778888877642 2345699999999999999999999999999999998887766541 11 1 12111
Q ss_pred -CCCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc--CCeeeeccc
Q 012412 164 -TGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT--WSLRTIGPT 240 (464)
Q Consensus 164 -~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~~~~~vgp~ 240 (464)
.+....+|++|+++..+++..... ........+. ... ...+++++++|||++||+...+.+.+. .++++|||+
T Consensus 162 ~~~~~~~iPg~~~~~~~dlp~~~~~--~~~~~~~~~~-~~~-~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl 237 (451)
T PLN02410 162 KGQQNELVPEFHPLRCKDFPVSHWA--SLESIMELYR-NTV-DKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPL 237 (451)
T ss_pred ccCccccCCCCCCCChHHCcchhcC--CcHHHHHHHH-HHh-hcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEeccc
Confidence 122345888888777776654321 1112222222 222 346788999999999999999998764 369999999
Q ss_pred CCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcc--
Q 012412 241 IPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESE-- 318 (464)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~-- 318 (464)
.+.... +.+++. ...++.+||+.++++++|||||||....+.+++.+++.+|+.++.+|+|++....
T Consensus 238 ~~~~~~----------~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~ 306 (451)
T PLN02410 238 HLVASA----------PTSLLE-ENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVR 306 (451)
T ss_pred ccccCC----------Cccccc-cchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCccc
Confidence 754110 011111 1346789999988889999999999999999999999999999999999997431
Q ss_pred ----cCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhH
Q 012412 319 ----QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDV 394 (464)
Q Consensus 319 ----~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~ 394 (464)
...+|++|.++ .++|+.+++|+||.++|+|+++++||||||+||++||+++|||||++|++.||+.||+++++.
T Consensus 307 ~~~~~~~lp~~f~er--~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~ 384 (451)
T PLN02410 307 GSEWIESLPKEFSKI--ISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECV 384 (451)
T ss_pred ccchhhcCChhHHHh--ccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHH
Confidence 12478899888 789999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcceeecc-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012412 395 WKTGLKFP-IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 459 (464)
Q Consensus 395 ~G~g~~l~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 459 (464)
||+|+.+. .++.++|.++|+++|.+++|+++|++|+++++.+++++.+||++..++++|+++++.
T Consensus 385 ~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 385 WKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred hCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 89999997 899999999999999887788999999999999999999999999999999999864
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.8e-62 Score=478.11 Aligned_cols=427 Identities=27% Similarity=0.489 Sum_probs=336.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccC-CCCCCceEEEccCCCCCCCCCCccCHHHHHHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRD-SSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (464)
+.||+++|++++||++|++.||+.|+.+|++|||++++.+.+.+... ....+++++.+|++.++ +. ......+...
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~-~~--~~~~~~l~~a 82 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDD-DP--PRDFFSIENS 82 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCC-Cc--cccHHHHHHH
Confidence 45999999999999999999999999999999999999876655421 11236999999977654 22 1234444555
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhh----cCcccC---CCC
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVK----KGSLEL---PLT 164 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~~~~~~---p~~ 164 (464)
+...+...++++++++... .|++|||+|.+..|+..+|+++|||++.|++++++.+.++.+.. .+.... |..
T Consensus 83 ~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (448)
T PLN02562 83 MENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQ 161 (448)
T ss_pred HHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccccc
Confidence 5556777888888877543 46699999999999999999999999999999888777665442 111111 111
Q ss_pred CCce-eCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHh------cCCeeee
Q 012412 165 GNEI-LLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRK------TWSLRTI 237 (464)
Q Consensus 165 ~~~~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~------~~~~~~v 237 (464)
..+. .+|++|.+...+++.+.............+. +.+....+++++++|||.+||+...+.+.. .++++.|
T Consensus 162 ~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~i 240 (448)
T PLN02562 162 LEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWT-RTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQI 240 (448)
T ss_pred ccccccCCCCCCCChhhCcchhcCCCcchHHHHHHH-HHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEe
Confidence 1122 5788888888888765432222223345555 666677788999999999999977775542 2469999
Q ss_pred cccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccc-cCCHHHHHHHHHHHhhCCCeEEEEEcC
Q 012412 238 GPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFV-ELKAEEMEELAWGLKSSDQHFLWVVRE 316 (464)
Q Consensus 238 gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~ 316 (464)
||+.+... ....+...+.. +.++.+||+.++++++|||||||+. ..+.+++++++.+|++++++|||++..
T Consensus 241 Gpl~~~~~-------~~~~~~~~~~~-~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~ 312 (448)
T PLN02562 241 GPLHNQEA-------TTITKPSFWEE-DMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNP 312 (448)
T ss_pred cCcccccc-------cccCCCccccc-hHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 99976521 00001111122 3567799999877889999999986 678999999999999999999999965
Q ss_pred cccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhc
Q 012412 317 SEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWK 396 (464)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G 396 (464)
+....+++++.++ .++|+.+++|+||.++|+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||
T Consensus 313 ~~~~~l~~~~~~~--~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 313 VWREGLPPGYVER--VSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390 (448)
T ss_pred CchhhCCHHHHHH--hccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC
Confidence 4334578888777 78999999999999999999999999999999999999999999999999999999999987559
Q ss_pred ceeeccCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012412 397 TGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLA 458 (464)
Q Consensus 397 ~g~~l~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~ 458 (464)
+|+.+.+++.++|.++|+++|.|+ +||+||++++++++++ .+|||+...+++||++++
T Consensus 391 ~g~~~~~~~~~~l~~~v~~~l~~~---~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 391 IGVRISGFGQKEVEEGLRKVMEDS---GMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ceeEeCCCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 999988889999999999999886 9999999999999877 667999999999999874
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-61 Score=477.14 Aligned_cols=435 Identities=32% Similarity=0.606 Sum_probs=332.7
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHH--HHhCCCeEEEEeCcccccccccCC-CCCCceEEEccCCCCCCCCCCccCHHH
Q 012412 11 CKLAHCLVLTYPGQGHINPLLQFSRR--LQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDEGGYAQAESIEA 87 (464)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~--L~~rGh~V~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (464)
.++.||+++|++++||++|++.||+. |+.||++|||++++.+.+.+.... ....+.+..+++++++ +.+ .+...
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~-~~~--~~~~~ 82 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPK-DDP--RAPET 82 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCC-Ccc--cCHHH
Confidence 34679999999999999999999999 569999999999998876554211 1235777777777766 332 23445
Q ss_pred HHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCC---
Q 012412 88 YLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLT--- 164 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~--- 164 (464)
++..+...+...+++++++ .|+||||+|.+..|+..+|+++|||.+.|++.+++.+.++.+.+....+.+..
T Consensus 83 ~~~~~~~~~~~~l~~~l~~-----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~ 157 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE-----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDL 157 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc-----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCccccc
Confidence 5555554444444444443 24699999999999999999999999999999988888777653222122221
Q ss_pred CCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCc
Q 012412 165 GNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSF 244 (464)
Q Consensus 165 ~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~ 244 (464)
.....+|++|.+...+++.+..... ...+...+. +......+.+.+++||+.++|....+.+.+..++++|||+++..
T Consensus 158 ~~~~~~Pgl~~~~~~dl~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~~~ 235 (456)
T PLN02210 158 NQTVELPALPLLEVRDLPSFMLPSG-GAHFNNLMA-EFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVSPF 235 (456)
T ss_pred CCeeeCCCCCCCChhhCChhhhcCC-chHHHHHHH-HHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCchh
Confidence 1235688888777777776543211 111222222 33334566789999999999999988887655799999997531
Q ss_pred cccccccC-cccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCC
Q 012412 245 YLDKQIED-DKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLP 323 (464)
Q Consensus 245 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 323 (464)
....+... ....+..+|. .+.++.+|++.++++++|||||||....+.+++++++.+|+.++.+|+|++........+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~ 314 (456)
T PLN02210 236 LLGDDEEETLDGKNLDMCK-SDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNV 314 (456)
T ss_pred hcCcccccccccccccccc-cchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccccch
Confidence 10000000 0111112333 246789999998888999999999998899999999999999999999999753222223
Q ss_pred hhhhhhccC-CCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHh-Hhcceeec
Q 012412 324 KKFSDETLT-SHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILD-VWKTGLKF 401 (464)
Q Consensus 324 ~~~~~~~~~-~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~-~~G~g~~l 401 (464)
+.+.++ . ++|..+++|+||.++|+|+++++||||||+||++||+++|||||++|++.||+.||+++++ . |+|+.+
T Consensus 315 ~~~~~~--~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~-g~G~~l 391 (456)
T PLN02210 315 QVLQEM--VKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVF-GIGVRM 391 (456)
T ss_pred hhHHhh--ccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHh-CeEEEE
Confidence 444444 3 4788889999999999999999999999999999999999999999999999999999998 6 999998
Q ss_pred c------CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012412 402 P------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 459 (464)
Q Consensus 402 ~------~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 459 (464)
. .++.++|.++|+++|.+++|+++|+||+++++.+++++++|||+...+++|++++..
T Consensus 392 ~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~~ 455 (456)
T PLN02210 392 RNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDITI 455 (456)
T ss_pred eccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 4 489999999999999988788899999999999999999999999999999999864
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.5e-61 Score=468.66 Aligned_cols=428 Identities=36% Similarity=0.689 Sum_probs=335.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCccc-cccccc-CCCCCCceEEEccCCCCCCCC-CCccCHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFF-YKSLHR-DSSSSSIPLEAISDGYDEGGY-AQAESIEAYL 89 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~-~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~ 89 (464)
.||+++|++++||++|++.||+.|+. +|+.|||++++.+ ...+.. .....++++..+++++++ +. ........++
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~-g~~~~~~~~~~~~ 82 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDD-GVISNTDDVQNRL 82 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCC-ccccccccHHHHH
Confidence 59999999999999999999999996 7999999999854 222111 111236999999988776 33 2234555666
Q ss_pred HHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCcee
Q 012412 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (464)
..+...+...++++++++.....|++|||+|.+..|+..+|+++|||++.|++++++.+..+++.+... ...+.
T Consensus 83 ~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------~~~~~ 156 (455)
T PLN02152 83 VNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------NSVFE 156 (455)
T ss_pred HHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------CCeee
Confidence 667777788888888887543356799999999999999999999999999999999988877765321 12346
Q ss_pred CCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhcc--CCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCcccc
Q 012412 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENID--KADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLD 247 (464)
Q Consensus 170 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~ 247 (464)
+|++|.++..+++.+.........+...+. +...... ..+.+++|||++||....+.+.. .+++.|||+.+.....
T Consensus 157 iPglp~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~~v~~VGPL~~~~~~~ 234 (455)
T PLN02152 157 FPNLPSLEIRDLPSFLSPSNTNKAAQAVYQ-ELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-IEMVAVGPLLPAEIFT 234 (455)
T ss_pred cCCCCCCchHHCchhhcCCCCchhHHHHHH-HHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-CCEEEEcccCcccccc
Confidence 899988888888876643222222233333 3333332 24689999999999999988865 3799999997642100
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCccc-------C
Q 012412 248 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQ-------A 320 (464)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~-------~ 320 (464)
......+..++ ..+.++.+||+.++.+++|||||||....+.+++++++.+|+.++.+|+|++..... .
T Consensus 235 ---~~~~~~~~~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~ 310 (455)
T PLN02152 235 ---GSESGKDLSVR-DQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGE 310 (455)
T ss_pred ---ccccCcccccc-ccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccc
Confidence 00000001111 123579999999888899999999999999999999999999999999999975211 0
Q ss_pred -----cCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHh
Q 012412 321 -----KLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVW 395 (464)
Q Consensus 321 -----~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~ 395 (464)
.++++|.++ .++|+.+.+|+||.++|+|+++++||||||+||++||+++|||||++|++.||+.||+++++.|
T Consensus 311 ~~~~~~~~~~f~e~--~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 388 (455)
T PLN02152 311 EETEIEKIAGFRHE--LEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIW 388 (455)
T ss_pred cccccccchhHHHh--ccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHh
Confidence 235677777 7899999999999999999999999999999999999999999999999999999999999855
Q ss_pred cceeecc-----CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 012412 396 KTGLKFP-----IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 457 (464)
Q Consensus 396 G~g~~l~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l 457 (464)
|+|+.+. ..+.++|+++|+++|.|+ +++||+||+++++++++++.+||++..++++||+++
T Consensus 389 ~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 389 KTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred CceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 6666653 358999999999999754 457999999999999999999999999999999987
No 7
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.9e-60 Score=469.36 Aligned_cols=432 Identities=32% Similarity=0.631 Sum_probs=335.8
Q ss_pred CCCCCcEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHH
Q 012412 9 TSCKLAHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIE 86 (464)
Q Consensus 9 ~~~~~~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (464)
+.....||+++|++++||++|++.||++|+.| ||+|||++++.+.+.+.+.....+++|+.+|++.+. ......+..
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~-~~~~~~~~~ 84 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPS-ELVRAADFP 84 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCC-ccccccCHH
Confidence 44567899999999999999999999999999 999999999988777763222247999999976555 333233455
Q ss_pred HHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhh----cCcccCC
Q 012412 87 AYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVK----KGSLELP 162 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~~~~~~p 162 (464)
.++..+...+...++++++++. .++||||+|.++.|+..+|+++|||++.+++++++.+..+.++. .+..+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE 161 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 5555555455666777777654 35699999999999999999999999999999987777655542 1111211
Q ss_pred C---CCCce-eCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc--CCeee
Q 012412 163 L---TGNEI-LLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT--WSLRT 236 (464)
Q Consensus 163 ~---~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~~~~~ 236 (464)
. ....+ .+|+++.+...+++.+.... .....+.+. +.+....+++.+++||+++||+...+.+.+. .+++.
T Consensus 162 ~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~ 238 (459)
T PLN02448 162 LSESGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRIL-EAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYP 238 (459)
T ss_pred cccccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHH-HHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEE
Confidence 1 01111 47888777777777654321 223344455 5555667778999999999999888888765 36999
Q ss_pred ecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcC
Q 012412 237 IGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRE 316 (464)
Q Consensus 237 vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 316 (464)
|||+.+..... .. ..+.. ....+.++.+|++.++++++|||||||....+.+++++++.+|+.++.+|||++.+
T Consensus 239 iGP~~~~~~~~----~~-~~~~~-~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 239 IGPSIPYMELK----DN-SSSSN-NEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred ecCcccccccC----CC-ccccc-cccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 99997752110 00 00000 01113578999999888899999999998888999999999999999999998754
Q ss_pred cccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhc
Q 012412 317 SEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWK 396 (464)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G 396 (464)
. ..++.++ .++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||
T Consensus 313 ~-----~~~~~~~--~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g 385 (459)
T PLN02448 313 E-----ASRLKEI--CGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWK 385 (459)
T ss_pred c-----hhhHhHh--ccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhC
Confidence 2 1233333 44789999999999999999999999999999999999999999999999999999999998558
Q ss_pred ceeecc-------CcCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 012412 397 TGLKFP-------IVKRDAIADCISEILEG--ERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 460 (464)
Q Consensus 397 ~g~~l~-------~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 460 (464)
+|+.+. ..++++|+++++++|.+ ++|+++|++|+++++.+++++.+|||+...+++|+++++.-
T Consensus 386 ~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 386 IGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred ceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Confidence 888874 36899999999999986 35789999999999999999999999999999999998753
No 8
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1e-59 Score=460.55 Aligned_cols=433 Identities=26% Similarity=0.428 Sum_probs=331.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCccccc-cccc----C-CCCCCceEEEccCCCCCCCCCCcc
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTLVTTRFFYK-SLHR----D-SSSSSIPLEAISDGYDEGGYAQAE 83 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~-~~~~----~-~~~~~~~~~~i~~~~~~~~~~~~~ 83 (464)
++.||+++|+++.||++|++.||+.|+.+| ..|||++++.+.. .+.. . ....+++|..+|+...........
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 346999999999999999999999999998 9999999987652 1110 0 112369999999543210101122
Q ss_pred CHHHHHHHHHHhCcH----HHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcc
Q 012412 84 SIEAYLERFWQIGPQ----TLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSL 159 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~----~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 159 (464)
+...++..+...... .+.+++++.....+|++|||+|.+..|+..+|+++|||++.|++++++.+.++.+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 344344333334433 3444444332222456999999999999999999999999999999988887766532211
Q ss_pred c---C--CCCCCceeCCCC-CCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHh---
Q 012412 160 E---L--PLTGNEILLPGM-PPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRK--- 230 (464)
Q Consensus 160 ~---~--p~~~~~~~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~--- 230 (464)
+ . +..+.++.+|++ |.+...+++.+...... ...+. +......+++.+++||+++||+...+.+..
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~----~~~~~-~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~ 236 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDG----YDAYV-KLAILFTKANGILVNSSFDIEPYSVNHFLDEQN 236 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcCCcc----HHHHH-HHHHhcccCCEEEEEchHHHhHHHHHHHHhccC
Confidence 1 1 122234678998 67888888876532111 23344 444566788999999999999988877743
Q ss_pred cCCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeE
Q 012412 231 TWSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHF 310 (464)
Q Consensus 231 ~~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 310 (464)
.++++.|||+.+... ...+. ...+ .++++.+||+.++++++|||||||....+.+++++++.+|+.++++|
T Consensus 237 ~p~v~~VGPl~~~~~--~~~~~-----~~~~--~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~f 307 (468)
T PLN02207 237 YPSVYAVGPIFDLKA--QPHPE-----QDLA--RRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRF 307 (468)
T ss_pred CCcEEEecCCccccc--CCCCc-----cccc--hhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcE
Confidence 246999999976411 00110 0011 23679999999888899999999999999999999999999999999
Q ss_pred EEEEcCcc---cCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhH
Q 012412 311 LWVVRESE---QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTN 387 (464)
Q Consensus 311 i~~~~~~~---~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~n 387 (464)
+|++.... .+.+|++|.++ .++|+.+++|+||.++|+|+++++||||||+||++||+++|||||++|++.||+.|
T Consensus 308 lW~~r~~~~~~~~~lp~~f~er--~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N 385 (468)
T PLN02207 308 LWSLRTEEVTNDDLLPEGFLDR--VSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLN 385 (468)
T ss_pred EEEEeCCCccccccCCHHHHhh--cCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhh
Confidence 99997422 23577888888 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcceeecc---------CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012412 388 AKYILDVWKTGLKFP---------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLA 458 (464)
Q Consensus 388 a~rl~~~~G~g~~l~---------~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~ 458 (464)
|+++++.||+|+.+. ..+.++|.++|+++|.+ ++++||+||+++++.+++++.+|||+...+++|++++.
T Consensus 386 a~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 386 AFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred HHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 998887339998652 35899999999999973 35699999999999999999999999999999999997
Q ss_pred hhc
Q 012412 459 CSK 461 (464)
Q Consensus 459 ~~~ 461 (464)
.-+
T Consensus 465 ~~~ 467 (468)
T PLN02207 465 GIK 467 (468)
T ss_pred hcc
Confidence 643
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.6e-60 Score=466.28 Aligned_cols=438 Identities=27% Similarity=0.400 Sum_probs=329.7
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCC-CCCCceEEEccC----CCCCCCCCCccCH
Q 012412 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISD----GYDEGGYAQAESI 85 (464)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~~~~~~~i~~----~~~~~~~~~~~~~ 85 (464)
.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.... ...++++..+|. ++++ +.+....+
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPd-G~~~~~~~ 85 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPS-GVENVKDL 85 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCC-CCcChhhc
Confidence 34689999999999999999999999999999999999998876655321 123577766541 3443 33322221
Q ss_pred ----HHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccC
Q 012412 86 ----EAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLEL 161 (464)
Q Consensus 86 ----~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 161 (464)
...+..........+.+++++. ..|++|||+|.+..|+..+|+++|||++.|++++++.+..+.+++......
T Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~ 162 (477)
T PLN02863 86 PPSGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTK 162 (477)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccc
Confidence 1122222223344444555443 135599999999999999999999999999999999999888875432111
Q ss_pred --CCC-CCce---eCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc---C
Q 012412 162 --PLT-GNEI---LLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT---W 232 (464)
Q Consensus 162 --p~~-~~~~---~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~---~ 232 (464)
+.+ .... .+|++|.++..+++.++............+. +.+.....++++++|||++||+...+.+... .
T Consensus 163 ~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 241 (477)
T PLN02863 163 INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIK-DSFRANIASWGLVVNSFTELEGIYLEHLKKELGHD 241 (477)
T ss_pred ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHH-HHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCC
Confidence 111 1111 4788888888888765542222222334444 4444455677899999999999999988764 4
Q ss_pred CeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEE
Q 012412 233 SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLW 312 (464)
Q Consensus 233 ~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 312 (464)
+++.|||+.+..... . .....|...+. .++++.+||+.++++++|||||||....+.+++.+++.+|++++++|||
T Consensus 242 ~v~~IGPL~~~~~~~-~--~~~~~~~~~~~-~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw 317 (477)
T PLN02863 242 RVWAVGPILPLSGEK-S--GLMERGGPSSV-SVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIW 317 (477)
T ss_pred CeEEeCCCccccccc-c--cccccCCcccc-cHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEE
Confidence 699999997641100 0 00011211111 2467999999988889999999999988999999999999999999999
Q ss_pred EEcCcc-----cCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhH
Q 012412 313 VVRESE-----QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTN 387 (464)
Q Consensus 313 ~~~~~~-----~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~n 387 (464)
+++... ...+++++.++. ...++++.+|+||.++|+|.++++||||||+||++||+++|||||++|++.||+.|
T Consensus 318 ~~~~~~~~~~~~~~lp~~~~~r~-~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 396 (477)
T PLN02863 318 CVKEPVNEESDYSNIPSGFEDRV-AGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVN 396 (477)
T ss_pred EECCCcccccchhhCCHHHHHHh-ccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhh
Confidence 997432 124777776663 24577788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcceeecc-----CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 012412 388 AKYILDVWKTGLKFP-----IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 460 (464)
Q Consensus 388 a~rl~~~~G~g~~l~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 460 (464)
|+++++.||+|+.+. ..+.+++.+++++++.+ +++||+||+++++.+++++.+||++..++++|++++...
T Consensus 397 a~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 397 ASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 999875449999983 35899999999999942 259999999999999999999999999999999999765
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.2e-59 Score=459.01 Aligned_cols=420 Identities=26% Similarity=0.452 Sum_probs=325.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCcccccccccC-CCCCCceEEEccC----CCCCCCCCCccCHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSLHRD-SSSSSIPLEAISD----GYDEGGYAQAESIE 86 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~~~~-~~~~~~~~~~i~~----~~~~~~~~~~~~~~ 86 (464)
+.||+++|++++||++|++.||+.|+ .+|++|||++++.+...+.+. ....++.+..+|. ++++ ...+..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~----~~~~~~ 80 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVD----PSAHVV 80 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCC----CCccHH
Confidence 35999999999999999999999998 789999999999776544211 1123688988884 2221 111222
Q ss_pred HHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhc--CcccCC--
Q 012412 87 AYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKK--GSLELP-- 162 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~--~~~~~p-- 162 (464)
..+..+.......++++++++. .+++|||+|.++.|+..+|+++|||++.|++++++.++++.+... .....+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~ 157 (481)
T PLN02992 81 TKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHT 157 (481)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccc
Confidence 2333333344556667766642 245999999999999999999999999999999888766554421 111110
Q ss_pred CCCCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc--------CCe
Q 012412 163 LTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT--------WSL 234 (464)
Q Consensus 163 ~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--------~~~ 234 (464)
....+..+|++|.++..+++..+... .......+. +......+++++++|||.+||....+.+... .++
T Consensus 158 ~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v 234 (481)
T PLN02992 158 VQRKPLAMPGCEPVRFEDTLDAYLVP--DEPVYRDFV-RHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPV 234 (481)
T ss_pred cCCCCcccCCCCccCHHHhhHhhcCC--CcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCce
Confidence 01124568888887777777533221 112334445 5555667889999999999999999887542 479
Q ss_pred eeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEE
Q 012412 235 RTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVV 314 (464)
Q Consensus 235 ~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 314 (464)
+.|||+++... + ...+.++.+||+.++++++|||||||....+.+++++++.+|+.++.+|+|++
T Consensus 235 ~~VGPl~~~~~-----~----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~ 299 (481)
T PLN02992 235 YPIGPLCRPIQ-----S----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVV 299 (481)
T ss_pred EEecCccCCcC-----C----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999976411 0 01246689999998888999999999999999999999999999999999999
Q ss_pred cCc------------------c--cCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCc
Q 012412 315 RES------------------E--QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVP 374 (464)
Q Consensus 315 ~~~------------------~--~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP 374 (464)
... . .+.+|++|.+++ ...++.+.+|+||.++|+|+++++||||||+||++||+++|||
T Consensus 300 r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~-~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP 378 (481)
T PLN02992 300 RPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRT-HDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVP 378 (481)
T ss_pred eCCcccccccccccCcccccccchhhhCCHHHHHHh-cCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCC
Confidence 521 0 124677777773 2345677799999999999999999999999999999999999
Q ss_pred EeccCCccchhhHHHHHH-hHhcceeecc----CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH--cCCCcH
Q 012412 375 MVAMPQWSDQSTNAKYIL-DVWKTGLKFP----IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVA--KGGSSD 447 (464)
Q Consensus 375 ~v~~P~~~DQ~~na~rl~-~~~G~g~~l~----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~--~gg~~~ 447 (464)
||++|++.||+.||++++ ++ |+|+.++ .++.++|.++|+++|.+++|+++|++++++++.+++++. +|||+.
T Consensus 379 ~l~~P~~~DQ~~na~~~~~~~-g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~ 457 (481)
T PLN02992 379 MIAWPLFAEQNMNAALLSDEL-GIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAH 457 (481)
T ss_pred EEecCccchhHHHHHHHHHHh-CeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchH
Confidence 999999999999999995 77 9999996 389999999999999988788999999999999999995 599999
Q ss_pred HHHHHHHHHHHh
Q 012412 448 SNIDEFVASLAC 459 (464)
Q Consensus 448 ~~~~~~~~~l~~ 459 (464)
..+++|++++..
T Consensus 458 ~~l~~~v~~~~~ 469 (481)
T PLN02992 458 ESLCRVTKECQR 469 (481)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 11
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=6.9e-59 Score=462.72 Aligned_cols=436 Identities=28% Similarity=0.511 Sum_probs=319.6
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCC-----C----CCceEEEcc---CCCCCCC
Q 012412 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSS-----S----SSIPLEAIS---DGYDEGG 78 (464)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~-----~----~~~~~~~i~---~~~~~~~ 78 (464)
++++||+++|+++.||++|++.||+.|+.||++|||++++.+.+.+.+... . -.+...++| .++++ +
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~-g 81 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE-G 81 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC-C
Confidence 345799999999999999999999999999999999999988765542100 1 134445555 34544 3
Q ss_pred CCCcc--------CHHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHH
Q 012412 79 YAQAE--------SIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYI 150 (464)
Q Consensus 79 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~ 150 (464)
.+... ....++..+. .....+.+.++++.++. ++||||+|.++.|+..+|+++|||++.|++++++....
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLETT-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred cccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhcC-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 22211 1223333333 22334555555554443 45999999999999999999999999999988877666
Q ss_pred HhhhhcCc--ccCCCCCCceeCCCCCC---CCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHH
Q 012412 151 YYHVKKGS--LELPLTGNEILLPGMPP---LEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVV 225 (464)
Q Consensus 151 ~~~~~~~~--~~~p~~~~~~~~p~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~ 225 (464)
+...+... ...+.......+|++|. +...+++.. .....+...+. .......+.+.+++||+++||....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 160 SYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMK-EVRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHH-HHHhhcccCCEEEEECHHHHHHHHH
Confidence 55442211 11111112334777763 222222221 11122333333 4444567788999999999999888
Q ss_pred HHHHhc--CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHH
Q 012412 226 EWLRKT--WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGL 303 (464)
Q Consensus 226 ~~~~~~--~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al 303 (464)
+.+.+. .++++|||+.+.... .......+... ...+.++.+|++.++++++|||||||....+.+.+.+++.+|
T Consensus 235 ~~~~~~~~~~~~~VGPl~~~~~~---~~~~~~~~~~~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l 310 (482)
T PLN03007 235 DFYKSFVAKRAWHIGPLSLYNRG---FEEKAERGKKA-NIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGL 310 (482)
T ss_pred HHHHhccCCCEEEEccccccccc---cccccccCCcc-ccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHH
Confidence 888754 369999998653110 00000001111 112467899999988899999999999888899999999999
Q ss_pred hhCCCeEEEEEcCcc-----cCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEecc
Q 012412 304 KSSDQHFLWVVRESE-----QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAM 378 (464)
Q Consensus 304 ~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~ 378 (464)
+.++++|+|+++... ...+|++|.++. .+.|+.+.+|+||.++|+|+++++||||||+||++||+++|||||++
T Consensus 311 ~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~ 389 (482)
T PLN03007 311 EGSGQNFIWVVRKNENQGEKEEWLPEGFEERT-KGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTW 389 (482)
T ss_pred HHCCCCEEEEEecCCcccchhhcCCHHHHHHh-ccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeec
Confidence 999999999997531 124777887764 36788889999999999999999999999999999999999999999
Q ss_pred CCccchhhHHHHHHhHhcceeec--------c--CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHH
Q 012412 379 PQWSDQSTNAKYILDVWKTGLKF--------P--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDS 448 (464)
Q Consensus 379 P~~~DQ~~na~rl~~~~G~g~~l--------~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 448 (464)
|++.||+.||+++++.|++|+.+ + .++.++|.++|+++|.+++|++||++|+++++.+++++.+||+++.
T Consensus 390 P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~ 469 (482)
T PLN03007 390 PVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFN 469 (482)
T ss_pred cchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999887543444432 3 5799999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012412 449 NIDEFVASLAC 459 (464)
Q Consensus 449 ~~~~~~~~l~~ 459 (464)
.+++|++++..
T Consensus 470 ~l~~~v~~~~~ 480 (482)
T PLN03007 470 DLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 12
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=8.5e-59 Score=456.77 Aligned_cols=434 Identities=27% Similarity=0.497 Sum_probs=325.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCC-----CCCCceEEEcc-----CCCCCCCCCC
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-----SSSSIPLEAIS-----DGYDEGGYAQ 81 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-----~~~~~~~~~i~-----~~~~~~~~~~ 81 (464)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.... ....++|+.+| +++++ +.+.
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~-~~~~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI-GCEN 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC-Cccc
Confidence 4579999999999999999999999999999999999998765444211 11248899887 46655 3322
Q ss_pred ccC--HHHHHHHHHH---hCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhh-
Q 012412 82 AES--IEAYLERFWQ---IGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVK- 155 (464)
Q Consensus 82 ~~~--~~~~~~~~~~---~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~- 155 (464)
... ...++..+.. .....++++++.. .+|+||||+|.+..|+..+|+++|||++.|++++++....+..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 221 1123333322 2334455555432 245699999999999999999999999999999988877654332
Q ss_pred -cCcccCCCCCCceeCCCCCC---CCCCCCCCccccCCCCchHHHHHHHHHhhh-ccCCcEEEecchhhhhHHHHHHHHh
Q 012412 156 -KGSLELPLTGNEILLPGMPP---LEPQDMPSFIHDLGSYPAVSYMMMKFQFEN-IDKADWVLCNTFYELEEEVVEWLRK 230 (464)
Q Consensus 156 -~~~~~~p~~~~~~~~p~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~ 230 (464)
....+.+.+..++.+|++|. +...+++........ ...+. ..+.. ...++++++|||.+||+...+.+..
T Consensus 163 ~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~----~~~~~-~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 163 HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPD----LDDVR-NKMREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred hcccccCCCCCceeecCCCCccccccHHHCChhhcCccc----HHHHH-HHHHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 11222333345667899874 555566654322111 12233 33332 2456799999999999999988876
Q ss_pred c--CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC
Q 012412 231 T--WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQ 308 (464)
Q Consensus 231 ~--~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 308 (464)
. .+++.|||+.+..... .+..........+..++..||+.++++++|||||||.....++++.+++.+|+.++.
T Consensus 238 ~~~~~v~~VGPL~~~~~~~----~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~ 313 (491)
T PLN02534 238 AIKKKVWCVGPVSLCNKRN----LDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKK 313 (491)
T ss_pred hcCCcEEEECccccccccc----ccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 4 3699999997531100 000000001111235689999998888999999999999999999999999999999
Q ss_pred eEEEEEcCccc-----C-cCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCcc
Q 012412 309 HFLWVVRESEQ-----A-KLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWS 382 (464)
Q Consensus 309 ~~i~~~~~~~~-----~-~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~ 382 (464)
+|+|++..... . .+|++|.+++ .+.++.+.+|+||.++|+|+++++||||||+||++||+++|||||++|++.
T Consensus 314 ~flW~~r~~~~~~~~~~~~~p~gf~~~~-~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~ 392 (491)
T PLN02534 314 PFIWVIKTGEKHSELEEWLVKENFEERI-KGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFA 392 (491)
T ss_pred CEEEEEecCccccchhhhcCchhhHHhh-ccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccc
Confidence 99999974211 1 3567776652 256777889999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhHhcceeecc---------------CcCHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHcCCC
Q 012412 383 DQSTNAKYILDVWKTGLKFP---------------IVKRDAIADCISEILE--GERGKELRRNAGKWRKLAKEAVAKGGS 445 (464)
Q Consensus 383 DQ~~na~rl~~~~G~g~~l~---------------~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~l~~~~~~~~~~gg~ 445 (464)
||+.||+++++.||+|+.+. ..+.++|.++|+++|. +++|+++|+||++|++.+++++.+|||
T Consensus 393 dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGS 472 (491)
T PLN02534 393 EQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGS 472 (491)
T ss_pred cHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999998889998763 1688999999999997 456789999999999999999999999
Q ss_pred cHHHHHHHHHHHHh
Q 012412 446 SDSNIDEFVASLAC 459 (464)
Q Consensus 446 ~~~~~~~~~~~l~~ 459 (464)
+...+++||++|..
T Consensus 473 S~~nl~~fv~~i~~ 486 (491)
T PLN02534 473 SHINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999974
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.2e-58 Score=458.42 Aligned_cols=427 Identities=24% Similarity=0.438 Sum_probs=330.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEeCccccc----ccccC-----CCCCCceEEEccCCCCCCC
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKG----IKVTLVTTRFFYK----SLHRD-----SSSSSIPLEAISDGYDEGG 78 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rG----h~V~~~~~~~~~~----~~~~~-----~~~~~~~~~~i~~~~~~~~ 78 (464)
.+.||+++|++++||++|++.||+.|+.+| +.|||++++.+.. .+... ....++.+..+|++..+.+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 345999999999999999999999999996 7999999876432 11110 0112589999986643212
Q ss_pred CCCccCHHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcC-
Q 012412 79 YAQAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKG- 157 (464)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~- 157 (464)
. .+...++..+...+...++++++.+. .|++|||+|.+..|+..+|+++|||++.|++++++.+.++.++...
T Consensus 82 ~---e~~~~~~~~~~~~~~~~l~~~L~~l~---~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 A---AGVEEFISRYIQLHAPHVRAAIAGLS---CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred c---ccHHHHHHHHHHhhhHHHHHHHHhcC---CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1 23345555555566666777776652 3579999999999999999999999999999999988887776321
Q ss_pred -ccc--CCCCCCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc---
Q 012412 158 -SLE--LPLTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT--- 231 (464)
Q Consensus 158 -~~~--~p~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--- 231 (464)
..+ .+....+..+|++|.++..+++.+..... ......+. .......+++++++|||++||+...+.+...
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~--~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 232 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKK--SPNYAWFV-YHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCT 232 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCC--cHHHHHHH-HHHHhhhhcCEEEEechHHhhHHHHHHHHhcccc
Confidence 111 11111234589998888888886553221 11223334 4445567788999999999999999888653
Q ss_pred -----CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC
Q 012412 232 -----WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS 306 (464)
Q Consensus 232 -----~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~ 306 (464)
++++.|||+.+... . +. ....++++.+||+.++.+++|||||||....+.+++.+++.+|+.+
T Consensus 233 ~~~~~~~v~~vGPl~~~~~---~-~~--------~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s 300 (480)
T PLN00164 233 PGRPAPTVYPIGPVISLAF---T-PP--------AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERS 300 (480)
T ss_pred ccCCCCceEEeCCCccccc---c-CC--------CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHc
Confidence 36999999975311 0 00 0123567999999988889999999999888999999999999999
Q ss_pred CCeEEEEEcCcc------------cCcCChhhhhhccCCCcE-EEEeccChHHhhccccccceeccCChhHHHHHHHhCC
Q 012412 307 DQHFLWVVRESE------------QAKLPKKFSDETLTSHKS-LVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGV 373 (464)
Q Consensus 307 ~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~nv-~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~Gv 373 (464)
+.+|+|++.... ...+|+++.++ ..++. .+.+|+||.+||+|+++++||||||+||++||+++||
T Consensus 301 ~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GV 378 (480)
T PLN00164 301 GHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLER--TKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGV 378 (480)
T ss_pred CCCEEEEEcCCcccccccccccchhhhCChHHHHH--hcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCC
Confidence 999999997431 11266677666 34444 4459999999999999999999999999999999999
Q ss_pred cEeccCCccchhhHHHHHHhHhcceeecc-------CcCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHcCC
Q 012412 374 PMVAMPQWSDQSTNAKYILDVWKTGLKFP-------IVKRDAIADCISEILEGE--RGKELRRNAGKWRKLAKEAVAKGG 444 (464)
Q Consensus 374 P~v~~P~~~DQ~~na~rl~~~~G~g~~l~-------~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~gg 444 (464)
|||++|++.||+.||.++++.||+|+.+. ..+.++|.++|+++|.++ +|+.+|++|+++++.+++++++||
T Consensus 379 P~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gG 458 (480)
T PLN00164 379 PMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGG 458 (480)
T ss_pred CEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998865339999884 258999999999999774 378999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhhc
Q 012412 445 SSDSNIDEFVASLACSK 461 (464)
Q Consensus 445 ~~~~~~~~~~~~l~~~~ 461 (464)
|+...+++|++++...+
T Consensus 459 SS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 459 SSYAALQRLAREIRHGA 475 (480)
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 99999999999997653
No 14
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.6e-59 Score=455.88 Aligned_cols=428 Identities=26% Similarity=0.439 Sum_probs=320.9
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccC--CCCCCceEEEcc----CCCCCCCCCCccCH
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRD--SSSSSIPLEAIS----DGYDEGGYAQAESI 85 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~--~~~~~~~~~~i~----~~~~~~~~~~~~~~ 85 (464)
.+.||+++|++++||++|++.||+.|+.||+.|||++++.+...+... ....++++..+| ++++. +.+...+.
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~-~~~~~~~~ 83 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPS-SAESSTDV 83 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCC-Cccccccc
Confidence 356999999999999999999999999999999999999876555421 112358899888 45554 32222222
Q ss_pred H----HHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhh----cC
Q 012412 86 E----AYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVK----KG 157 (464)
Q Consensus 86 ~----~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~~ 157 (464)
. .++......+...++++++++ +++|||+|.+..|+..+|+++|||++.|++++++.+.++.+.. ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 1 233333334444455554442 4599999999999999999999999999999988887765431 11
Q ss_pred cccCCCCCCce-eCCCC-C---C--CCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHh
Q 012412 158 SLELPLTGNEI-LLPGM-P---P--LEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRK 230 (464)
Q Consensus 158 ~~~~p~~~~~~-~~p~~-p---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 230 (464)
..+ ..+... .+|+. | . +...+++.+.............+. +......+++++++|||.+||....+.+.+
T Consensus 159 ~~~--~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 159 DLR--STAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred cCC--CccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 111 111111 13432 1 1 333455554432222222233344 444556778899999999999999999876
Q ss_pred c--CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC
Q 012412 231 T--WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQ 308 (464)
Q Consensus 231 ~--~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 308 (464)
. .+++.|||+.+.... ..+ ... .. ....+++.+||+.++++++|||||||....+.+++.+++.+|+.+++
T Consensus 236 ~~~~~v~~VGPl~~~~~~--~~~-~~~--~~--~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~ 308 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIED--DEE-DDT--ID--VKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSET 308 (472)
T ss_pred hhCCCeEEEecCCccccc--ccc-ccc--cc--cchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 5 369999999763110 000 000 00 01125789999998788999999999999999999999999999999
Q ss_pred eEEEEEcCcc------cCcCChhhhhhccCCCcEEE-EeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCc
Q 012412 309 HFLWVVRESE------QAKLPKKFSDETLTSHKSLV-VSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQW 381 (464)
Q Consensus 309 ~~i~~~~~~~------~~~~~~~~~~~~~~~~nv~~-~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~ 381 (464)
+|+|++.... ...+|++|.++ ..++..+ .+|+||.++|+|+++++||||||+||++||+++|||||++|++
T Consensus 309 ~FlWv~r~~~~~~~~~~~~lp~~f~~~--~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 309 PFFWVLRNEPGTTQNALEMLPDGFEER--VKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred CEEEEEcCCcccccchhhcCChHHHHh--ccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch
Confidence 9999997521 12477888777 4555555 5999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhHhcceeecc--C----cCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 012412 382 SDQSTNAKYILDVWKTGLKFP--I----VKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVA 455 (464)
Q Consensus 382 ~DQ~~na~rl~~~~G~g~~l~--~----~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 455 (464)
.||+.||+++++. |+|+.+. + ++.++|.++|+++|.+++|++||+||+++++.++++ +...++++++++
T Consensus 387 ~DQ~~Na~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~~~ 461 (472)
T PLN02670 387 NEQGLNTRLLHGK-KLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDELVH 461 (472)
T ss_pred hccHHHHHHHHHc-CeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHHHH
Confidence 9999999999998 9999985 2 789999999999998877889999999999999964 788999999999
Q ss_pred HHHhhcC
Q 012412 456 SLACSKN 462 (464)
Q Consensus 456 ~l~~~~~ 462 (464)
+|...+.
T Consensus 462 ~l~~~~~ 468 (472)
T PLN02670 462 YLRENRS 468 (472)
T ss_pred HHHHhcc
Confidence 9988763
No 15
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-58 Score=460.88 Aligned_cols=425 Identities=25% Similarity=0.426 Sum_probs=325.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCccccccc-------ccCC--CCCCceEEEccCCCCCCCCCC
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTLVTTRFFYKSL-------HRDS--SSSSIPLEAISDGYDEGGYAQ 81 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~~-------~~~~--~~~~~~~~~i~~~~~~~~~~~ 81 (464)
++||+++|+++.||++|++.||+.|+.+| ..|||++++.+.... .... ...++++..+|++.+. ...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~~- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP-TTE- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC-ccc-
Confidence 35999999999999999999999999998 889999998764421 1000 0235999999866542 111
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHHhcC-CCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCc--
Q 012412 82 AESIEAYLERFWQIGPQTLTELVEKMNG-SDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGS-- 158 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~-- 158 (464)
...+..++..+.......++.++..... ..+|++|||+|.++.|+..+|+++|||++.|++++++.+.++.+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~ 159 (481)
T PLN02554 80 DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDE 159 (481)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccc
Confidence 1122233333333333333333332221 2245689999999999999999999999999999999998887763211
Q ss_pred --cc---CCCCCCceeCCCCC-CCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHh--
Q 012412 159 --LE---LPLTGNEILLPGMP-PLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRK-- 230 (464)
Q Consensus 159 --~~---~p~~~~~~~~p~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~-- 230 (464)
.+ .++...+..+|+++ +++..+++..... ..+...+. +......+++++++||+.+|+......+.+
T Consensus 160 ~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~----~~~~~~~~-~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~ 234 (481)
T PLN02554 160 KKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS----KEWLPLFL-AQARRFREMKGILVNTVAELEPQALKFFSGSS 234 (481)
T ss_pred cccCccccCCCCceeECCCCCCCCCHHHCCCcccC----HHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHHhcc
Confidence 11 11212345688884 6777777654421 12334444 555667789999999999999988888864
Q ss_pred --cCCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC
Q 012412 231 --TWSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQ 308 (464)
Q Consensus 231 --~~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 308 (464)
.++++.|||+..... +.. +. ..+.++++.+|++.++++++|||||||+...+.+++++++.+|+.+++
T Consensus 235 ~~~~~v~~vGpl~~~~~-----~~~---~~--~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~ 304 (481)
T PLN02554 235 GDLPPVYPVGPVLHLEN-----SGD---DS--KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGH 304 (481)
T ss_pred cCCCCEEEeCCCccccc-----ccc---cc--ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCC
Confidence 246999999943211 000 00 012346899999998778899999999988899999999999999999
Q ss_pred eEEEEEcCcc--------------cCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCc
Q 012412 309 HFLWVVRESE--------------QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVP 374 (464)
Q Consensus 309 ~~i~~~~~~~--------------~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP 374 (464)
+|||++.+.. ...++++|.++ .++|+++++|+||.+||.|.++++||||||+||++||+++|||
T Consensus 305 ~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r--~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP 382 (481)
T PLN02554 305 RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR--TKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVP 382 (481)
T ss_pred CeEEEEcCCcccccccccccccchhhhCChHHHHH--hccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCC
Confidence 9999996521 12357888777 7799999999999999999999999999999999999999999
Q ss_pred EeccCCccchhhHH-HHHHhHhcceeecc-------------CcCHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHH
Q 012412 375 MVAMPQWSDQSTNA-KYILDVWKTGLKFP-------------IVKRDAIADCISEILE-GERGKELRRNAGKWRKLAKEA 439 (464)
Q Consensus 375 ~v~~P~~~DQ~~na-~rl~~~~G~g~~l~-------------~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~l~~~~~~~ 439 (464)
||++|++.||+.|| .+++++ |+|+.+. .++.++|.++|+++|. |+ +||+||+++++.++++
T Consensus 383 ~l~~P~~~DQ~~Na~~~v~~~-g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~---~~r~~a~~l~~~~~~a 458 (481)
T PLN02554 383 MAAWPLYAEQKFNAFEMVEEL-GLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS---DVRKRVKEMSEKCHVA 458 (481)
T ss_pred EEecCccccchhhHHHHHHHh-CceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHH
Confidence 99999999999999 557788 9999873 4799999999999997 54 9999999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHhh
Q 012412 440 VAKGGSSDSNIDEFVASLACS 460 (464)
Q Consensus 440 ~~~gg~~~~~~~~~~~~l~~~ 460 (464)
+++||++...+++||++|..+
T Consensus 459 v~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 459 LMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred hcCCChHHHHHHHHHHHHHhh
Confidence 999999999999999999865
No 16
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.3e-58 Score=449.15 Aligned_cols=421 Identities=26% Similarity=0.422 Sum_probs=324.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCcccccccc-c--CC---CCCCceEEEccCCCCCCCC-CCccC
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHK-GIKVTLVTTRFFYKSLH-R--DS---SSSSIPLEAISDGYDEGGY-AQAES 84 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~~~-~--~~---~~~~~~~~~i~~~~~~~~~-~~~~~ 84 (464)
..||+++|++++||++|++.||+.|+.+ |..|||++++....... . .. ...++.+..+|....+ +. ....+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVD-NLVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccc-cCCCCCcc
Confidence 4599999999999999999999999977 99999998876543321 0 00 1125899999854332 22 11113
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCc-cEEEecchHHHHHHHhhhh--cCcccC
Q 012412 85 IEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLL-GAPFLTQSCAVDYIYYHVK--KGSLEL 161 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~--~~~~~~ 161 (464)
....+..+.......++++++++. .|++|||+|.+..|+..+|+++||| .+.+.+++++....+.+.. .+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~ 158 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEG 158 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccc
Confidence 333333344466677888887764 2459999999999999999999999 5777777776665555442 111111
Q ss_pred --CCCCCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc--------
Q 012412 162 --PLTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT-------- 231 (464)
Q Consensus 162 --p~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~-------- 231 (464)
.+...++.+|++|.+...+++...... . ......+. +.+....+++++++|||++||+...+.+.+.
T Consensus 159 ~~~~~~~~~~vPg~p~l~~~dlp~~~~~~-~-~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~ 235 (470)
T PLN03015 159 EYVDIKEPLKIPGCKPVGPKELMETMLDR-S-DQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMK 235 (470)
T ss_pred ccCCCCCeeeCCCCCCCChHHCCHhhcCC-C-cHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccC
Confidence 011234668999988888888654321 1 12234444 5555678899999999999999999888653
Q ss_pred CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEE
Q 012412 232 WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFL 311 (464)
Q Consensus 232 ~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 311 (464)
++++.|||+.+.. . +...++++.+||+.++.+++|||||||....+.+++.+++.+|+.++++|+
T Consensus 236 ~~v~~VGPl~~~~-----~----------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~Fl 300 (470)
T PLN03015 236 VPVYPIGPIVRTN-----V----------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFV 300 (470)
T ss_pred CceEEecCCCCCc-----c----------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEE
Confidence 4699999997530 0 011235799999998889999999999999999999999999999999999
Q ss_pred EEEcCc-------------ccCcCChhhhhhccCCCcE-EEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEec
Q 012412 312 WVVRES-------------EQAKLPKKFSDETLTSHKS-LVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVA 377 (464)
Q Consensus 312 ~~~~~~-------------~~~~~~~~~~~~~~~~~nv-~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~ 377 (464)
|++... ..+.+|++|.++ ..++. .+.+|+||.++|+|.++++||||||+||++||+++|||||+
T Consensus 301 Wv~r~~~~~~~~~~~~~~~~~~~lp~~f~er--~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~ 378 (470)
T PLN03015 301 WVLRRPASYLGASSSDDDQVSASLPEGFLDR--TRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVA 378 (470)
T ss_pred EEEecCccccccccccccchhhcCChHHHHh--hccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEe
Confidence 999631 112466777766 44555 45699999999999999999999999999999999999999
Q ss_pred cCCccchhhHHHHHHhHhcceeecc------CcCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHcCCCcHHH
Q 012412 378 MPQWSDQSTNAKYILDVWKTGLKFP------IVKRDAIADCISEILEG--ERGKELRRNAGKWRKLAKEAVAKGGSSDSN 449 (464)
Q Consensus 378 ~P~~~DQ~~na~rl~~~~G~g~~l~------~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~ 449 (464)
+|++.||+.||+++++.||+|+.+. ..+.+++.++|+++|.+ ++|+++|+||+++++.+++++++|||+.+.
T Consensus 379 ~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~n 458 (470)
T PLN03015 379 WPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNS 458 (470)
T ss_pred cccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999999999999965559999983 58999999999999963 568899999999999999999999999999
Q ss_pred HHHHHHHH
Q 012412 450 IDEFVASL 457 (464)
Q Consensus 450 ~~~~~~~l 457 (464)
++++++++
T Consensus 459 l~~~~~~~ 466 (470)
T PLN03015 459 LFEWAKRC 466 (470)
T ss_pred HHHHHHhc
Confidence 99999886
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-58 Score=448.61 Aligned_cols=417 Identities=26% Similarity=0.412 Sum_probs=320.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEE--EeCcccccccc----cC-CCCCCceEEEccCCCCC-CCCCCc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTL--VTTRFFYKSLH----RD-SSSSSIPLEAISDGYDE-GGYAQA 82 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~--~~~~~~~~~~~----~~-~~~~~~~~~~i~~~~~~-~~~~~~ 82 (464)
.-||+++|++++||++|++.||+.|+.+| +.|++ ++++.+...+. .. ....++++..+|++.+. ......
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 45999999999999999999999999998 44555 55544322111 10 11236999999876532 121222
Q ss_pred cCHHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCc--cc
Q 012412 83 ESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGS--LE 160 (464)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~--~~ 160 (464)
.+....+..+.......+.++++++... .|++|||+|.+..|+..+|+++|||++.|++++++.+.++.+..... .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 161 (451)
T PLN03004 83 HHHESLLLEILCFSNPSVHRTLFSLSRN-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTP 161 (451)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHhcCCC-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccccc
Confidence 2333444444555666777777776332 46799999999999999999999999999999999988887753211 11
Q ss_pred CC--CCCCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc---CCee
Q 012412 161 LP--LTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT---WSLR 235 (464)
Q Consensus 161 ~p--~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~---~~~~ 235 (464)
.+ .+..++.+|++|.++..+++.+.... .......+. +......+++.+++|||++||....+.+... .+++
T Consensus 162 ~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~--~~~~~~~~~-~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~ 238 (451)
T PLN03004 162 GKNLKDIPTVHIPGVPPMKGSDMPKAVLER--DDEVYDVFI-MFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIY 238 (451)
T ss_pred ccccccCCeecCCCCCCCChHHCchhhcCC--chHHHHHHH-HHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEE
Confidence 11 11234578999988888888765321 122334444 5555667788999999999999999988653 3699
Q ss_pred eecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEc
Q 012412 236 TIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVR 315 (464)
Q Consensus 236 ~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 315 (464)
.|||+.+... .. . +. . ..+.++.+||+.++++++|||||||....+.+++++++.+|+.++++|+|++.
T Consensus 239 ~vGPl~~~~~----~~---~-~~-~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r 307 (451)
T PLN03004 239 PIGPLIVNGR----IE---D-RN-D--NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVR 307 (451)
T ss_pred EEeeeccCcc----cc---c-cc-c--chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 9999975310 00 0 11 0 11356899999988889999999999989999999999999999999999998
Q ss_pred Ccc--------cC-cCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhh
Q 012412 316 ESE--------QA-KLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQST 386 (464)
Q Consensus 316 ~~~--------~~-~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~ 386 (464)
... .. .+|++|.++. ...|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.
T Consensus 308 ~~~~~~~~~~~~~~~lp~gf~er~-~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~ 386 (451)
T PLN03004 308 NPPELEKTELDLKSLLPEGFLSRT-EDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRF 386 (451)
T ss_pred CCccccccccchhhhCChHHHHhc-cCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchh
Confidence 531 11 2777888773 2357888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcceeecc-----CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHH
Q 012412 387 NAKYILDVWKTGLKFP-----IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDS 448 (464)
Q Consensus 387 na~rl~~~~G~g~~l~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 448 (464)
||+++++.||+|+.++ ..+.++|.++|+++|.|+ +||++++++++..+.++++|||+.+
T Consensus 387 na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~---~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 387 NRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC---PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999986449999996 369999999999999886 9999999999999999999999753
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.7e-57 Score=449.00 Aligned_cols=430 Identities=27% Similarity=0.446 Sum_probs=322.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCC---eEEEEeCccccc-----ccccC-CCCCCceEEEccCCCCCCCCCC-
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGI---KVTLVTTRFFYK-----SLHRD-SSSSSIPLEAISDGYDEGGYAQ- 81 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh---~V~~~~~~~~~~-----~~~~~-~~~~~~~~~~i~~~~~~~~~~~- 81 (464)
+..||+++|++++||++|++.||+.|+.+|. .||++++..... .+... ....+++|..+|++......+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 3469999999999999999999999999983 567777543221 11110 1123699999986542211110
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHHhcC----CCC-CccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhc
Q 012412 82 AESIEAYLERFWQIGPQTLTELVEKMNG----SDS-PVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKK 156 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~~~-p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 156 (464)
.......+..+...+...+++.++++.. ... |++|||+|.+..|+..+|+++|||++.|++++++.+.++.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 1112223333444455556666666532 112 56999999999999999999999999999999988887765531
Q ss_pred --Cccc--CCC--CCCceeCCCC-CCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHH
Q 012412 157 --GSLE--LPL--TGNEILLPGM-PPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLR 229 (464)
Q Consensus 157 --~~~~--~p~--~~~~~~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~ 229 (464)
...+ .+. ...++.+||+ +.++..+++....... ....+. +.+....+++.+++|||++||+...+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~-~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 236 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWV-EIAERFPEAKGILVNSFTELEPNAFDYFS 236 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHH-HHHHhhcccCEeeeccHHHHHHHHHHHHH
Confidence 1111 111 1234568898 4567667665432211 123344 55556677889999999999999998885
Q ss_pred hc----CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhh
Q 012412 230 KT----WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKS 305 (464)
Q Consensus 230 ~~----~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~ 305 (464)
.. ++++.|||+.+... . . . ...+..+..++.+||+.++.+++|||||||+...+.+++.+++.+|+.
T Consensus 237 ~~~~~~p~v~~vGpl~~~~~---~-~---~--~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~ 307 (475)
T PLN02167 237 RLPENYPPVYPVGPILSLKD---R-T---S--PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALEL 307 (475)
T ss_pred hhcccCCeeEEecccccccc---c-c---C--CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 53 46999999976411 0 0 0 001111246799999998888999999999988899999999999999
Q ss_pred CCCeEEEEEcCcc------cCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccC
Q 012412 306 SDQHFLWVVRESE------QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMP 379 (464)
Q Consensus 306 ~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P 379 (464)
++++|||+++... ...+|++|.++ ..+++++++|+||.++|+|+++++||||||+||++||+++|||||++|
T Consensus 308 ~~~~flw~~~~~~~~~~~~~~~lp~~~~er--~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P 385 (475)
T PLN02167 308 VGCRFLWSIRTNPAEYASPYEPLPEGFMDR--VMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP 385 (475)
T ss_pred CCCcEEEEEecCcccccchhhhCChHHHHH--hccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 9999999997531 12477888777 667888999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHH-HHhHhcceeecc---------CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHH
Q 012412 380 QWSDQSTNAKY-ILDVWKTGLKFP---------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSN 449 (464)
Q Consensus 380 ~~~DQ~~na~r-l~~~~G~g~~l~---------~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~ 449 (464)
++.||+.||++ +++. |+|+.+. .++.++|.++|+++|.++ ++||++|+++++.+++++.+|||+...
T Consensus 386 ~~~DQ~~na~~~~~~~-g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~ 462 (475)
T PLN02167 386 MYAEQQLNAFTMVKEL-GLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVA 462 (475)
T ss_pred ccccchhhHHHHHHHh-CeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999986 5677 9999874 268999999999999764 489999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 012412 450 IDEFVASLACS 460 (464)
Q Consensus 450 ~~~~~~~l~~~ 460 (464)
+++||++|...
T Consensus 463 l~~~v~~i~~~ 473 (475)
T PLN02167 463 VKRFIDDLLGD 473 (475)
T ss_pred HHHHHHHHHhc
Confidence 99999999764
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.4e-57 Score=438.90 Aligned_cols=414 Identities=25% Similarity=0.422 Sum_probs=313.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCC-CC--CCceEEEcc--CCCCCCCCCCccC---
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SS--SSIPLEAIS--DGYDEGGYAQAES--- 84 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~--~~~~~~~i~--~~~~~~~~~~~~~--- 84 (464)
++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.... .. ..+.+.++| ++++. +.+...+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~-g~e~~~~~~~ 83 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPV-GTETVSEIPV 83 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCC-cccccccCCh
Confidence 579999999999999999999999999999999999998766554211 11 126777777 55554 3222111
Q ss_pred -HHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCC
Q 012412 85 -IEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPL 163 (464)
Q Consensus 85 -~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~ 163 (464)
....+..........+.++++.+ + +||||+| +..|+..+|+++|||++.|++++++.+.++.. ..+..
T Consensus 84 ~~~~~~~~a~~~~~~~~~~~l~~~----~-~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~---- 152 (453)
T PLN02764 84 TSADLLMSAMDLTRDQVEVVVRAV----E-PDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL---- 152 (453)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHhC----C-CCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC----
Confidence 11222222223344455555442 3 4999999 48899999999999999999999888777653 11111
Q ss_pred CCCceeCCCCCC----CCCCCCCCccc--cCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc--CCee
Q 012412 164 TGNEILLPGMPP----LEPQDMPSFIH--DLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT--WSLR 235 (464)
Q Consensus 164 ~~~~~~~p~~p~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~~~~ 235 (464)
..+.|++|. ++..+++.+.. ...........+. +......+++.+++|||.+||+...+.+.+. .++|
T Consensus 153 ---~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~ 228 (453)
T PLN02764 153 ---GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLE-RVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVL 228 (453)
T ss_pred ---CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHH-HHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEE
Confidence 122477763 44445544321 1011111222222 4435567788999999999999999988664 3699
Q ss_pred eecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEc
Q 012412 236 TIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVR 315 (464)
Q Consensus 236 ~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 315 (464)
.|||+.+.. . .. ...++++.+|||.++++++|||||||....+.+++.+++.+|+..+.+|+|++.
T Consensus 229 ~VGPL~~~~-------~-~~------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r 294 (453)
T PLN02764 229 LTGPVFPEP-------D-KT------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVK 294 (453)
T ss_pred EeccCccCc-------c-cc------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 999997641 0 00 012467999999999999999999999989999999999999999999999997
Q ss_pred Cc-----ccCcCChhhhhhccCCCcE-EEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHH
Q 012412 316 ES-----EQAKLPKKFSDETLTSHKS-LVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAK 389 (464)
Q Consensus 316 ~~-----~~~~~~~~~~~~~~~~~nv-~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 389 (464)
.. ....+|++|.++ ..++. .+.+|+||.+||+|.++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 295 ~~~~~~~~~~~lp~~f~~r--~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 372 (453)
T PLN02764 295 PPRGSSTIQEALPEGFEER--VKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTR 372 (453)
T ss_pred CCCCCcchhhhCCcchHhh--hccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHH
Confidence 42 123588888887 44555 44599999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcceeecc-----CcCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhhcC
Q 012412 390 YILDVWKTGLKFP-----IVKRDAIADCISEILEG--ERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACSKN 462 (464)
Q Consensus 390 rl~~~~G~g~~l~-----~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~~~ 462 (464)
++++.||+|+.+. .++.++|.++++++|.+ +.|+++|++++++++.++ +||++...+++||+++....+
T Consensus 373 ~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 373 LLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred HHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHhcc
Confidence 9975339999874 37999999999999987 447789999999999997 489999999999999987644
No 20
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.9e-57 Score=441.24 Aligned_cols=413 Identities=22% Similarity=0.383 Sum_probs=306.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCC-CCCceEEEc--c--CCCCCCCCCCccCHHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSS-SSSIPLEAI--S--DGYDEGGYAQAESIEA 87 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~-~~~~~~~~i--~--~~~~~~~~~~~~~~~~ 87 (464)
++||+++|+++.||++|++.||+.|+.+||+|||++++.+...+..... ..++.+..+ + ++++. +.+....+..
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~-g~~~~~~l~~ 82 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPA-GAETTSDIPI 82 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCC-CcccccchhH
Confidence 4699999999999999999999999999999999999887766653211 124556554 3 34544 3332223332
Q ss_pred HHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCc
Q 012412 88 YLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNE 167 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 167 (464)
.+..+.......+.+.++++.++. ++||||+| ++.|+..+|+++|||++.|++++++... +.+...... .
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~~-~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~-------~ 152 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRAL-RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKL-------G 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcccc-------C
Confidence 233332222223334444443332 45999999 6789999999999999999999987653 333221111 1
Q ss_pred eeCCCCCC----CCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc--CCeeeecccC
Q 012412 168 ILLPGMPP----LEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT--WSLRTIGPTI 241 (464)
Q Consensus 168 ~~~p~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~~~~~vgp~~ 241 (464)
..+|++|. ++..+++.+. ........+.........+++.+++|||.+||+...+.+... ++++.|||+.
T Consensus 153 ~~~pglp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~ 228 (442)
T PLN02208 153 VPPPGYPSSKVLFRENDAHALA----TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMF 228 (442)
T ss_pred CCCCCCCCcccccCHHHcCccc----ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecc
Confidence 22577764 2344444321 111223333312224556789999999999999999888664 3699999997
Q ss_pred CCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCc----
Q 012412 242 PSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRES---- 317 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~---- 317 (464)
+.. .. ..++++++.+||+.++++++|||||||....+.+.+.+++.+++..+.+++|++...
T Consensus 229 ~~~-------~~-------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~ 294 (442)
T PLN02208 229 PEP-------DT-------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS 294 (442)
T ss_pred cCc-------CC-------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc
Confidence 641 00 012357899999998888999999999998899999999998877788888887642
Q ss_pred -ccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhc
Q 012412 318 -EQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWK 396 (464)
Q Consensus 318 -~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G 396 (464)
....+|++|.++. ...|+.+.+|+||.++|+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||
T Consensus 295 ~~~~~lp~~f~~r~-~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g 373 (442)
T PLN02208 295 TVQEGLPEGFEERV-KGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFE 373 (442)
T ss_pred chhhhCCHHHHHHH-hcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhc
Confidence 1135778887774 24577777999999999999999999999999999999999999999999999999999877339
Q ss_pred ceeecc--C---cCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012412 397 TGLKFP--I---VKRDAIADCISEILEGE--RGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 459 (464)
Q Consensus 397 ~g~~l~--~---~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 459 (464)
+|+.+. + ++.++|.++|++++.++ .|+++|++++++++.+. ++|++..++++||+++++
T Consensus 374 ~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 374 VSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred eeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHH
Confidence 999996 3 89999999999999774 37889999999999985 478999999999999865
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.7e-56 Score=436.49 Aligned_cols=413 Identities=23% Similarity=0.395 Sum_probs=306.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCC-CCCCceEEEcc----CCCCCCCCCCccCHHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAIS----DGYDEGGYAQAESIEA 87 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~~~~~~~i~----~~~~~~~~~~~~~~~~ 87 (464)
+.||+++|+++.||++|++.||+.|+.+|++|||++++.+...+.... ...++.|..++ +++++ +.+...+...
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~-g~e~~~~l~~ 82 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPF-GAETASDLPN 82 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCC-cccccccchh
Confidence 569999999999999999999999999999999999998766554221 12247775553 45554 3222222211
Q ss_pred HHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCc
Q 012412 88 YLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNE 167 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 167 (464)
............+...++++.+... +||||+|. +.|+..+|+++|||++.|++++++...++.+.... . .
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~~~-p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-~-------~ 152 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRALK-PDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-L-------G 152 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh-c-------C
Confidence 1121222222234444444433334 49999994 88999999999999999999999888776653211 0 0
Q ss_pred eeCCCCCC----CCCCCC--CCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc--CCeeeecc
Q 012412 168 ILLPGMPP----LEPQDM--PSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT--WSLRTIGP 239 (464)
Q Consensus 168 ~~~p~~p~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~~~~~vgp 239 (464)
.+.|++|. +...+. +.+.. . ....+. +......+++.+++|||.+||+...+.+... .+++.|||
T Consensus 153 ~~~pg~p~~~~~~~~~~~~~~~~~~---~---~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGP 225 (446)
T PLN00414 153 FPPPDYPLSKVALRGHDANVCSLFA---N---SHELFG-LITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGP 225 (446)
T ss_pred CCCCCCCCCcCcCchhhcccchhhc---c---cHHHHH-HHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcc
Confidence 12455543 111111 11111 0 113333 4445567788999999999999999988764 26999999
Q ss_pred cCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCc--
Q 012412 240 TIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRES-- 317 (464)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~-- 317 (464)
+.+... . ..+ .....++.+|||.++++++|||||||....+.+++.+++.+|+..+.+|+|++...
T Consensus 226 l~~~~~-------~-~~~----~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~ 293 (446)
T PLN00414 226 MLPEPQ-------N-KSG----KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKG 293 (446)
T ss_pred cCCCcc-------c-ccC----cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCC
Confidence 976410 0 000 11235688999999999999999999999999999999999999999999999642
Q ss_pred ---ccCcCChhhhhhccCCCcEEEE-eccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHh
Q 012412 318 ---EQAKLPKKFSDETLTSHKSLVV-SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILD 393 (464)
Q Consensus 318 ---~~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~ 393 (464)
....+|++|.++ ..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++
T Consensus 294 ~~~~~~~lp~~f~~r--~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~ 371 (446)
T PLN00414 294 SSTVQEALPEGFEER--VKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTE 371 (446)
T ss_pred cccchhhCChhHHHH--hcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHH
Confidence 123688899888 56666665 899999999999999999999999999999999999999999999999999964
Q ss_pred Hhcceeecc-----CcCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhhc
Q 012412 394 VWKTGLKFP-----IVKRDAIADCISEILEGE--RGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACSK 461 (464)
Q Consensus 394 ~~G~g~~l~-----~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~~ 461 (464)
.||+|+.+. .++.++|+++++++|.++ .|+++|++++++++.+.+ .||++ ..+++||+++..-+
T Consensus 372 ~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~~~~ 442 (446)
T PLN00414 372 ELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALENEV 442 (446)
T ss_pred HhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHHhc
Confidence 339999995 289999999999999764 367899999999999753 46634 44899999986554
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.4e-46 Score=374.98 Aligned_cols=402 Identities=17% Similarity=0.210 Sum_probs=274.9
Q ss_pred CCcEEEE-EcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCC--CCCCc------
Q 012412 12 KLAHCLV-LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEG--GYAQA------ 82 (464)
Q Consensus 12 ~~~~il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~------ 82 (464)
...|||+ +|.++.+|+.-+.+++++|++|||+||++++.... .... ....+++.+.++...... .....
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYAS-HLCGNITEIDASLSVEYFKKLVKSSAVFRKR 96 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-cccc-CCCCCEEEEEcCCChHHHHHHHhhhhHHHhh
Confidence 4568985 48889999999999999999999999999875321 1110 013456655554111000 00000
Q ss_pred c---CHHHH----HHHHHHhCcHHHH--HHHHHhcCCCCCccEEEeCCchhhHHHHHHHc-CCccEEEecchHHHHHHHh
Q 012412 83 E---SIEAY----LERFWQIGPQTLT--ELVEKMNGSDSPVDCIVYDSILLWALDVAKKF-GLLGAPFLTQSCAVDYIYY 152 (464)
Q Consensus 83 ~---~~~~~----~~~~~~~~~~~l~--~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~-giP~v~~~~~~~~~~~~~~ 152 (464)
. +.... ...+...+...+. ++.+.+.....+||+||+|.+..|+..+|+.+ ++|.|.+++...... ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~--~~ 174 (507)
T PHA03392 97 GVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE--NF 174 (507)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh--HH
Confidence 0 00001 1111111221111 12233331225689999999999999999999 999888777542211 11
Q ss_pred hhhcCcccCCCCCCceeCCCCCCCCCCCCCCccccCCCCch------HH-------HHHHHHHhhh--------ccCCcE
Q 012412 153 HVKKGSLELPLTGNEILLPGMPPLEPQDMPSFIHDLGSYPA------VS-------YMMMKFQFEN--------IDKADW 211 (464)
Q Consensus 153 ~~~~~~~~~p~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~~--------~~~~~~ 211 (464)
... +..| ..++++|.+ .....+.+.++.|..+.-. .. ..+.++.+.. ..+.+.
T Consensus 175 ~~~-gg~p----~~~syvP~~-~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l 248 (507)
T PHA03392 175 ETM-GAVS----RHPVYYPNL-WRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQL 248 (507)
T ss_pred Hhh-ccCC----CCCeeeCCc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcE
Confidence 111 1111 224567766 3344567777766555211 00 0011122211 234568
Q ss_pred EEecchhhhhHHHHHHHHhcC-CeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEeccccc
Q 012412 212 VLCNTFYELEEEVVEWLRKTW-SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVE 290 (464)
Q Consensus 212 ~l~~s~~~l~~~~~~~~~~~~-~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~ 290 (464)
+++|+.+.+++ +++.+ ++.+|||+..+.. . .++.++++.+|++.. ++++|||||||...
T Consensus 249 ~lvns~~~~d~-----~rp~~p~v~~vGgi~~~~~------~--------~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~ 308 (507)
T PHA03392 249 LFVNVHPVFDN-----NRPVPPSVQYLGGLHLHKK------P--------PQPLDDYLEEFLNNS-TNGVVYVSFGSSID 308 (507)
T ss_pred EEEecCccccC-----CCCCCCCeeeecccccCCC------C--------CCCCCHHHHHHHhcC-CCcEEEEECCCCCc
Confidence 99999998886 23333 4999999865410 0 124568999999975 45799999999863
Q ss_pred ---CCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHH
Q 012412 291 ---LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTME 367 (464)
Q Consensus 291 ---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~e 367 (464)
.+.+.++.+++++++++.+|||++++.. .+.+ .|+|+++.+|+||.+||+|+.+++||||||.||++|
T Consensus 309 ~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~---~~~~------~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~E 379 (507)
T PHA03392 309 TNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV---EAIN------LPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDE 379 (507)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCCc---Cccc------CCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHH
Confidence 5789999999999999999999997532 1111 789999999999999998877777999999999999
Q ss_pred HHHhCCcEeccCCccchhhHHHHHHhHhcceeecc--CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCC
Q 012412 368 ALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGS 445 (464)
Q Consensus 368 al~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 445 (464)
|+++|||+|++|++.||+.||+|++++ |+|+.++ +++.++|.++|+++|+|+ +||+||+++++.++++ .-+
T Consensus 380 al~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~~~t~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~~---p~~ 452 (507)
T PHA03392 380 AIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDTVTVSAAQLVLAIVDVIENP---KYRKNLKELRHLIRHQ---PMT 452 (507)
T ss_pred HHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEeccCCcCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhC---CCC
Confidence 999999999999999999999999999 9999998 899999999999999997 9999999999999974 334
Q ss_pred cHHHHHHHHHHHHh
Q 012412 446 SDSNIDEFVASLAC 459 (464)
Q Consensus 446 ~~~~~~~~~~~l~~ 459 (464)
..+.+..-++++..
T Consensus 453 ~~~~av~~iE~v~r 466 (507)
T PHA03392 453 PLHKAIWYTEHVIR 466 (507)
T ss_pred HHHHHHHHHHHHHh
Confidence 44555555555543
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.6e-46 Score=381.15 Aligned_cols=382 Identities=24% Similarity=0.337 Sum_probs=223.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCc-cC---------
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQA-ES--------- 84 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~--------- 84 (464)
|||++|. ++||+.++..|+++|++|||+||++++......-. .....+++..++.+......... ..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNP--SKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSES 78 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT--------S-CCEEEE-----TT------TTHHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccccccc--ccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhc
Confidence 7888885 77999999999999999999999999864322221 12456677776644433111111 00
Q ss_pred -----HHHHHHHH---HHhCcHHHH------HHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHH
Q 012412 85 -----IEAYLERF---WQIGPQTLT------ELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYI 150 (464)
Q Consensus 85 -----~~~~~~~~---~~~~~~~l~------~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~ 150 (464)
....+..+ .......++ ++++.+.. .++|++|+|.+..|+..+|+.+++|.+++.+.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~--- 153 (500)
T PF00201_consen 79 SFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY--- 153 (500)
T ss_dssp CCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS---
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccccc---
Confidence 01111110 111111111 11111221 247999999999999999999999998754332100
Q ss_pred HhhhhcCcc-cCCCCCCceeCCCCCCCCCCCCCCccccCCCCch--HHHHHHHHHhh-h------------------ccC
Q 012412 151 YYHVKKGSL-ELPLTGNEILLPGMPPLEPQDMPSFIHDLGSYPA--VSYMMMKFQFE-N------------------IDK 208 (464)
Q Consensus 151 ~~~~~~~~~-~~p~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~------------------~~~ 208 (464)
...... ..| ..+.++|.. .....+.+.+..|..+.-. ...... .... . +.+
T Consensus 154 ---~~~~~~~g~p--~~psyvP~~-~s~~~~~msf~~Ri~N~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (500)
T PF00201_consen 154 ---DLSSFSGGVP--SPPSYVPSM-FSDFSDRMSFWQRIKNFLFYLYFRFIF-RYFFSPQDKLYKKYFGFPFSFRELLSN 226 (500)
T ss_dssp ---CCTCCTSCCC--TSTTSTTCB-CCCSGTTSSSST--TTSHHHHHHHHHH-HHGGGS-TTS-EEESS-GGGCHHHHHH
T ss_pred ---hhhhhccCCC--CChHHhccc-cccCCCccchhhhhhhhhhhhhhcccc-ccchhhHHHHHhhhcccccccHHHHHH
Confidence 000111 111 123345554 2344566677766655421 111111 1111 1 111
Q ss_pred CcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEeccc
Q 012412 209 ADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSF 288 (464)
Q Consensus 209 ~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~ 288 (464)
.+.+++|+.+.++++ .+.++ ++.+||++... -.+|.++++..|++...++++|||||||.
T Consensus 227 ~~l~l~ns~~~ld~p-rp~~p---~v~~vGgl~~~----------------~~~~l~~~~~~~~~~~~~~~vv~vsfGs~ 286 (500)
T PF00201_consen 227 ASLVLINSHPSLDFP-RPLLP---NVVEVGGLHIK----------------PAKPLPEELWNFLDSSGKKGVVYVSFGSI 286 (500)
T ss_dssp HHHCCSSTEEE-----HHHHC---TSTTGCGC-S--------------------TCHHHHHHHTSTTTTTEEEEEE-TSS
T ss_pred HHHHhhhccccCcCC-cchhh---cccccCccccc----------------cccccccccchhhhccCCCCEEEEecCcc
Confidence 223445555544431 11111 35556655332 12356788999999755789999999999
Q ss_pred cc-CCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHH
Q 012412 289 VE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTME 367 (464)
Q Consensus 289 ~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~e 367 (464)
.. .+.+..+.+++++++++.+|||++.+... .. +++|+++.+|+||.+||+|+++++||||||+||++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~----~~------l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~E 356 (500)
T PF00201_consen 287 VSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP----EN------LPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQE 356 (500)
T ss_dssp STT-HHHHHHHHHHHHHCSTTEEEEEETCSHG----CH------HHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHH
T ss_pred cchhHHHHHHHHHHHHhhCCCccccccccccc----cc------ccceEEEeccccchhhhhcccceeeeeccccchhhh
Confidence 75 45556889999999999999999976211 11 568999999999999999999999999999999999
Q ss_pred HHHhCCcEeccCCccchhhHHHHHHhHhcceeecc--CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCC
Q 012412 368 ALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGS 445 (464)
Q Consensus 368 al~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 445 (464)
|+++|||||++|+++||+.||+++++. |+|+.++ +++.++|.++|+++|+|+ +|++||+++++.++++...+..
T Consensus 357 a~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~~p~~p~~ 432 (500)
T PF00201_consen 357 ALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLENP---SYKENAKRLSSLFRDRPISPLE 432 (500)
T ss_dssp HHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHSH---HHHHHHHHHHHTTT--------
T ss_pred hhhccCCccCCCCcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999999999999999 9999998 999999999999999997 9999999999999987444433
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=3.9e-43 Score=345.42 Aligned_cols=363 Identities=23% Similarity=0.289 Sum_probs=246.3
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCc---cCHHHHHHHHHHh
Q 012412 19 LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQA---ESIEAYLERFWQI 95 (464)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~ 95 (464)
+.+|+.||++|+++||++|+++||+|+|++++.+.+.+. ..|+.|.+++........... .+....+..+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVE----AAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDE 76 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHH----HcCCEEEecCCcCccccccccccCcchHHHHHHHHHH
Confidence 357899999999999999999999999999999999998 789999999865433111100 2334444545444
Q ss_pred CcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCCCCCC
Q 012412 96 GPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPGMPP 175 (464)
Q Consensus 96 ~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~p~ 175 (464)
....+..+.+.+ .+++| |+||+|.++.++..+|+.+|||+|.+++.+.... .+.....+ . -+.+
T Consensus 77 ~~~~~~~l~~~~-~~~~p-DlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~~~--~------~~~~-- 140 (392)
T TIGR01426 77 AEDVLPQLEEAY-KGDRP-DLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMVSP--A------GEGS-- 140 (392)
T ss_pred HHHHHHHHHHHh-cCCCC-CEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccccc--c------chhh--
Confidence 444444444333 33455 9999999888899999999999998865431100 00000000 0 0000
Q ss_pred CCCCCCCCccccCCCCchHHHHHHHHHh-hh-------ccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCcccc
Q 012412 176 LEPQDMPSFIHDLGSYPAVSYMMMKFQF-EN-------IDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLD 247 (464)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~ 247 (464)
.......... .......+.+++. +.. .. ....+..+..+.+.|++....++ .++.++||+....
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~r~-~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~~~~~Gp~~~~~--- 212 (392)
T TIGR01426 141 AEEGAIAERG-LAEYVARLSALLE-EHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFD---DSFTFVGPCIGDR--- 212 (392)
T ss_pred hhhhccccch-hHHHHHHHHHHHH-HhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccC---CCeEEECCCCCCc---
Confidence 0000000000 0000011222211 111 00 01112234444444443111111 1488899875541
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhh
Q 012412 248 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFS 327 (464)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 327 (464)
.+...|.....++++||+|+||........++.+++++++.+.+++|+.+.... .+.+.
T Consensus 213 ------------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~---~~~~~ 271 (392)
T TIGR01426 213 ------------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD---PADLG 271 (392)
T ss_pred ------------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC---hhHhc
Confidence 111125544467889999999987666678899999999999999998865421 11221
Q ss_pred hhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc--CcC
Q 012412 328 DETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVK 405 (464)
Q Consensus 328 ~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~--~~~ 405 (464)
+ .++|+.+.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|...||+.||+++++. |+|..+. +++
T Consensus 272 ~---~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~~~~~ 345 (392)
T TIGR01426 272 E---LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPPEEVT 345 (392)
T ss_pred c---CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEeccccCC
Confidence 1 6789999999999999999999 999999999999999999999999999999999999999 9999987 889
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 012412 406 RDAIADCISEILEGERGKELRRNAGKWRKLAKEA 439 (464)
Q Consensus 406 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~ 439 (464)
+++|.++|.++|.|+ +|+++++++++.+++.
T Consensus 346 ~~~l~~ai~~~l~~~---~~~~~~~~l~~~~~~~ 376 (392)
T TIGR01426 346 AEKLREAVLAVLSDP---RYAERLRKMRAEIREA 376 (392)
T ss_pred HHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHc
Confidence 999999999999997 9999999999999863
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.4e-42 Score=340.34 Aligned_cols=362 Identities=17% Similarity=0.195 Sum_probs=236.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCC----------Ccc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYA----------QAE 83 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~ 83 (464)
|||+|++.++.||++|+++||++|++|||+|+|++++.+.+.+. ..|+.|.+++......... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVE----AAGLEFVPVGGDPDELLASPERNAGLLLLGPG 76 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHH----HcCCceeeCCCCHHHHHhhhhhcccccccchH
Confidence 69999999999999999999999999999999999998888888 7889999998543220000 011
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCC
Q 012412 84 SIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPL 163 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~ 163 (464)
........+.......+.++++.+. +++| |+||+|.+..++..+|+++|||++.++++++... ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-Dlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~--------~~----- 141 (401)
T cd03784 77 LLLGALRLLRREAEAMLDDLVAAAR-DWGP-DLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPT--------SA----- 141 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccCC-CEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcc--------cc-----
Confidence 1222333344444444555555443 3455 9999999888899999999999999887652211 00
Q ss_pred CCCceeCCCCCCCCCCCCCCc--cccCCCCchHHHHHHHHHhhhcc--C-------CcEEEecchhhhhHHHHHHHHhcC
Q 012412 164 TGNEILLPGMPPLEPQDMPSF--IHDLGSYPAVSYMMMKFQFENID--K-------ADWVLCNTFYELEEEVVEWLRKTW 232 (464)
Q Consensus 164 ~~~~~~~p~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~l~~s~~~l~~~~~~~~~~~~ 232 (464)
. .|+......... ............... +....+. . .+..+....+.+.+...++..
T Consensus 142 ------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 209 (401)
T cd03784 142 ------F--PPPLGRANLRLYALLEAELWQDLLGAWLR-ARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDWPR--- 209 (401)
T ss_pred ------C--CCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccCCCcEEEecCcccCCCCCCccc---
Confidence 0 000000000000 000000000000000 0000000 0 001111111100000000000
Q ss_pred Ceeeec-ccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEeccccc-CCHHHHHHHHHHHhhCCCeE
Q 012412 233 SLRTIG-PTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHF 310 (464)
Q Consensus 233 ~~~~vg-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~ 310 (464)
+..++| ++... +.....+.++..|++. ++++|||++||... ...+....++++++..+.++
T Consensus 210 ~~~~~g~~~~~~---------------~~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~ 272 (401)
T cd03784 210 FDLVTGYGFRDV---------------PYNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRA 272 (401)
T ss_pred cCcEeCCCCCCC---------------CCCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeE
Confidence 122222 11110 0001124667778764 57899999999875 45678888999999999999
Q ss_pred EEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHH
Q 012412 311 LWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKY 390 (464)
Q Consensus 311 i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r 390 (464)
+|+++...... .. .++|+++.+|+||.++|++|++ ||||||+||++||+++|||+|++|...||+.||++
T Consensus 273 i~~~g~~~~~~------~~--~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~ 342 (401)
T cd03784 273 ILSLGWGGLGA------ED--LPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAAR 342 (401)
T ss_pred EEEccCccccc------cC--CCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHH
Confidence 99997653321 11 6799999999999999999999 99999999999999999999999999999999999
Q ss_pred HHhHhcceeecc--CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 012412 391 ILDVWKTGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKE 438 (464)
Q Consensus 391 l~~~~G~g~~l~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~ 438 (464)
+++. |+|+.+. .++.+.|.++++++|++ .+++++.+.++.+++
T Consensus 343 ~~~~-G~g~~l~~~~~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~ 387 (401)
T cd03784 343 VAEL-GAGPALDPRELTAERLAAALRRLLDP----PSRRRAAALLRRIRE 387 (401)
T ss_pred HHHC-CCCCCCCcccCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh
Confidence 9999 9999997 77999999999999997 566677777777764
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-40 Score=323.24 Aligned_cols=390 Identities=22% Similarity=0.297 Sum_probs=242.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHH-
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER- 91 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~- 91 (464)
+|||+|+..+.+||++|+++|+++|.++||+|+|+|++.+.+.+. ..|+.|..++.. +. ............+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve----~ag~~f~~~~~~-~~-~~~~~~~~~~~~~~~ 74 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVE----AAGLAFVAYPIR-DS-ELATEDGKFAGVKSF 74 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHH----HhCcceeecccc-CC-hhhhhhhhhhccchh
Confidence 579999999999999999999999999999999999999999999 677777777743 21 11111111111111
Q ss_pred --HHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCcee
Q 012412 92 --FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (464)
Q Consensus 92 --~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (464)
..........++++-+.+. .| |+|+.|.... ...+++..++|++.......+.. .....+.+.. .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~e~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~ 141 (406)
T COG1819 75 RRLLQQFKKLIRELLELLREL-EP-DLVVDDARLS-LGLAARLLGIPVVGINVAPYTPL------PAAGLPLPPV----G 141 (406)
T ss_pred HHHhhhhhhhhHHHHHHHHhc-ch-hhhhcchhhh-hhhhhhhcccchhhhhhhhccCC------cccccCcccc----c
Confidence 2222222333444444443 45 9999885554 44899999999887544331111 1011110000 0
Q ss_pred CCCCCCCCCCCCCCccccCCCCc-hH-HHHHHHHHhhhccCC---cEEEecchhhhhHHHHHHHHhc-CCeeeecccCCC
Q 012412 170 LPGMPPLEPQDMPSFIHDLGSYP-AV-SYMMMKFQFENIDKA---DWVLCNTFYELEEEVVEWLRKT-WSLRTIGPTIPS 243 (464)
Q Consensus 170 ~p~~p~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~---~~~l~~s~~~l~~~~~~~~~~~-~~~~~vgp~~~~ 243 (464)
+-+...............+.... .+ ..... +....+... -..+..+-+.++....+..... ....++++.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~- 219 (406)
T COG1819 142 IAGKLPIPLYPLPPRLVRPLIFARSWLPKLVV-RRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIG- 219 (406)
T ss_pred ccccccccccccChhhccccccchhhhhhhhh-hhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccc-
Confidence 00000000000000000000000 00 00000 000000000 0000001011110000000000 00111221111
Q ss_pred ccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCC
Q 012412 244 FYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLP 323 (464)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 323 (464)
+.......+...|+. .++++||+|+||.... .++++.++++++.++.++|+..++. .....
T Consensus 220 ---------------~~~~~~~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~~~~ 280 (406)
T COG1819 220 ---------------PLLGEAANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RDTLV 280 (406)
T ss_pred ---------------cccccccccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-ccccc
Confidence 111111233333322 4688999999999866 8999999999999999999999662 11122
Q ss_pred hhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc-
Q 012412 324 KKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP- 402 (464)
Q Consensus 324 ~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~- 402 (464)
. .|+|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.|++++ |+|..++
T Consensus 281 ~-------~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~ 350 (406)
T COG1819 281 N-------VPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPF 350 (406)
T ss_pred c-------CCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCc
Confidence 2 7899999999999999999999 999999999999999999999999999999999999999 9999998
Q ss_pred -CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 012412 403 -IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 460 (464)
Q Consensus 403 -~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 460 (464)
.++.+.|+++|+++|.|+ +|+++++++++.++++ +| ...+.++++++...
T Consensus 351 ~~l~~~~l~~av~~vL~~~---~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 351 EELTEERLRAAVNEVLADD---SYRRAAERLAEEFKEE---DG--PAKAADLLEEFARE 401 (406)
T ss_pred ccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhc
Confidence 899999999999999997 9999999999999975 33 56677777775444
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.8e-38 Score=320.94 Aligned_cols=390 Identities=29% Similarity=0.409 Sum_probs=247.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCC--------CCceEEEccCCCCCCCCCCc-c
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSS--------SSIPLEAISDGYDEGGYAQA-E 83 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~-~ 83 (464)
..+++++++++.||++|+..+|+.|+++||+||++++............. ..+.+...+++++. ..... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPE-GWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhcc-chHHHHH
Confidence 44667777779999999999999999999999999998765554410000 01111111111222 11100 0
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHhcC-CCCCccEEEeCCchhhHHHHHHHcC-CccEEEecchHHHHHHHhhhhcCcccC
Q 012412 84 SIEAYLERFWQIGPQTLTELVEKMNG-SDSPVDCIVYDSILLWALDVAKKFG-LLGAPFLTQSCAVDYIYYHVKKGSLEL 161 (464)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~p~DlVI~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~~~~~~ 161 (464)
........+...+...+.+.+..+.. ...++|++|+|.+..+...+|.... ++...+....+....+..+....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~---- 159 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS---- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc----
Confidence 11111334444444455554433322 2132799999998777777776665 88888777776655433332211
Q ss_pred CCCCCceeCCCCCCCCCCCCCCccccCCCCch--HH------------HHHHHHHh-----------hhccCCcEEEecc
Q 012412 162 PLTGNEILLPGMPPLEPQDMPSFIHDLGSYPA--VS------------YMMMKFQF-----------ENIDKADWVLCNT 216 (464)
Q Consensus 162 p~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~-----------~~~~~~~~~l~~s 216 (464)
++|........+.+.+..+..+... .. ........ ....+....++++
T Consensus 160 -------~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~ 232 (496)
T KOG1192|consen 160 -------YVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNS 232 (496)
T ss_pred -------ccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEcc
Confidence 1222211111122233322221100 00 00000111 1112233444555
Q ss_pred hhhhhHHHHHHHHhcCCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCC--CceEEEEecccc---cC
Q 012412 217 FYELEEEVVEWLRKTWSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAK--ESVVYVSYGSFV---EL 291 (464)
Q Consensus 217 ~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~v~vs~Gs~~---~~ 291 (464)
.+.++....+ ...++++|||+..... .. +. ....+|++..+. .++|||||||+. ..
T Consensus 233 ~~~~~~~~~~---~~~~v~~IG~l~~~~~--------~~-----~~---~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 233 NPLLDFEPRP---LLPKVIPIGPLHVKDS--------KQ-----KS---PLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred CcccCCCCCC---CCCCceEECcEEecCc--------cc-----cc---cccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 4432220110 1236999999977611 00 00 123445554433 389999999998 78
Q ss_pred CHHHHHHHHHHHhhC-CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHh-hccccccceeccCChhHHHHHH
Q 012412 292 KAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEV-LAHEATGCFVTHCGWNSTMEAL 369 (464)
Q Consensus 292 ~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~l-l~~~~~~~vI~HgG~~s~~eal 369 (464)
+.+....++.+++.+ ++.|+|++.......+++++.++ .++||.+.+|+||.++ |.|.++++||||||+||++|++
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~--~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~ 371 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNR--GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESI 371 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCC--CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHH
Confidence 999999999999999 88999999775433344544332 2578999999999998 5899999999999999999999
Q ss_pred HhCCcEeccCCccchhhHHHHHHhHhcceeecc--CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 012412 370 SLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEA 439 (464)
Q Consensus 370 ~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~ 439 (464)
++|||+|++|+++||+.||+++++. |.|..+. +.+.+.+..++.+++.++ +|+++++++++.++++
T Consensus 372 ~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~~---~y~~~~~~l~~~~~~~ 439 (496)
T KOG1192|consen 372 YSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILENE---EYKEAAKRLSEILRDQ 439 (496)
T ss_pred hcCCceecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcCh---HHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999 7666665 676666999999999998 9999999999999864
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=2.2e-27 Score=227.97 Aligned_cols=320 Identities=17% Similarity=0.157 Sum_probs=203.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFW 93 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (464)
.||++...|+.||++|.+++|++|.++||+|.|++.....+.-. ....++.++.++.. ++..... ...+....
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l--~~~~g~~~~~~~~~----~l~~~~~-~~~~~~~~ 74 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTI--IEKENIPYYSISSG----KLRRYFD-LKNIKDPF 74 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccccc--CcccCCcEEEEecc----CcCCCch-HHHHHHHH
Confidence 47888888899999999999999999999999999776544322 22457888888632 1111111 12222222
Q ss_pred HhCcHH--HHHHHHHhcCCCCCccEEEeCCchh--hHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCcee
Q 012412 94 QIGPQT--LTELVEKMNGSDSPVDCIVYDSILL--WALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (464)
Q Consensus 94 ~~~~~~--l~~~~~~l~~~~~p~DlVI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (464)
...... ...++++. +| |+||+...+. .+..+|+.+++|+++...+.
T Consensus 75 ~~~~~~~~~~~i~~~~----kP-dvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------------- 124 (352)
T PRK12446 75 LVMKGVMDAYVRIRKL----KP-DVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------------- 124 (352)
T ss_pred HHHHHHHHHHHHHHhc----CC-CEEEecCchhhHHHHHHHHHcCCCEEEECCCC-------------------------
Confidence 221111 12233332 56 9999987553 36889999999999865543
Q ss_pred CCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCcccccc
Q 012412 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDKQ 249 (464)
Q Consensus 170 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~ 249 (464)
+|++ ..+.+. +. .+.+ +.+|++- ...++. .++.++|+.+.....
T Consensus 125 ~~g~--------------------~nr~~~-~~------a~~v-~~~f~~~----~~~~~~-~k~~~tG~Pvr~~~~--- 168 (352)
T PRK12446 125 TPGL--------------------ANKIAL-RF------ASKI-FVTFEEA----AKHLPK-EKVIYTGSPVREEVL--- 168 (352)
T ss_pred CccH--------------------HHHHHH-Hh------hCEE-EEEccch----hhhCCC-CCeEEECCcCCcccc---
Confidence 2222 233333 22 2232 3333321 111221 146788866554210
Q ss_pred ccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCH-HHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhh
Q 012412 250 IEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKA-EEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSD 328 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 328 (464)
....+...+.++..+++++|+|..||...... +.+..++..+.. +.+++|++|....+ +...
T Consensus 169 ------------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~---~~~~- 231 (352)
T PRK12446 169 ------------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLD---DSLQ- 231 (352)
T ss_pred ------------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHH---HHHh-
Confidence 01112222333333567899999999874322 333334444432 47888988865221 1111
Q ss_pred hccCCCcEEEEecc-ChH-HhhccccccceeccCChhHHHHHHHhCCcEeccCCc-----cchhhHHHHHHhHhcceeec
Q 012412 329 ETLTSHKSLVVSWC-PQL-EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQW-----SDQSTNAKYILDVWKTGLKF 401 (464)
Q Consensus 329 ~~~~~~nv~~~~~~-p~~-~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~-----~DQ~~na~rl~~~~G~g~~l 401 (464)
...++.+.+|+ ++. ++++.+|+ +|||||.+|++|++++|+|+|++|+. .||..||+.+++. |+|..+
T Consensus 232 ---~~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~~l 305 (352)
T PRK12446 232 ---NKEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYASVL 305 (352)
T ss_pred ---hcCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEEEc
Confidence 11355666887 544 89999999 99999999999999999999999975 4899999999999 999998
Q ss_pred c--CcCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 012412 402 P--IVKRDAIADCISEILEGERGKELRRNAGK 431 (464)
Q Consensus 402 ~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 431 (464)
. +++++.|.+++.+++.|+ +.+++++++
T Consensus 306 ~~~~~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 306 YEEDVTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred chhcCCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 7 899999999999999885 245544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.96 E-value=9.1e-27 Score=222.95 Aligned_cols=304 Identities=18% Similarity=0.212 Sum_probs=194.4
Q ss_pred cEEEE-EcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 14 AHCLV-LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 14 ~~il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
|||+| +...|.||+.++++||++| |||+|+|++.....+.+. .. +....++.-... ......+........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~----~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLK----PR-FPVREIPGLGPI-QENGRLDRWKTVRNN 72 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhc----cc-cCEEEccCceEe-ccCCccchHHHHHHH
Confidence 69996 6666889999999999999 699999999987665554 33 556666421111 111111112222211
Q ss_pred H---HhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCcee
Q 012412 93 W---QIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (464)
Q Consensus 93 ~---~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (464)
. ......++.+++.+.+. +| |+||+| +.+.+..+|+..|+|++.+........
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~-~p-DlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~--------------------- 128 (318)
T PF13528_consen 73 IRWLARLARRIRREIRWLREF-RP-DLVISD-FYPLAALAARRAGIPVIVISNQYWFLH--------------------- 128 (318)
T ss_pred HHhhHHHHHHHHHHHHHHHhc-CC-CEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc---------------------
Confidence 1 12233444554444432 55 999999 555578999999999998877652210
Q ss_pred CCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhh--ccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCcccc
Q 012412 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFEN--IDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLD 247 (464)
Q Consensus 170 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~ 247 (464)
+.. . . .....+..++. +.... ...++..+..++. .. .........+||+......
T Consensus 129 -~~~---~---~-------~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~~------~~~~~~~~~~~p~~~~~~~- 185 (318)
T PF13528_consen 129 -PNF---W---L-------PWDQDFGRLIE-RYIDRYHFPPADRRLALSFY-PP------LPPFFRVPFVGPIIRPEIR- 185 (318)
T ss_pred -ccC---C---c-------chhhhHHHHHH-HhhhhccCCcccceecCCcc-cc------ccccccccccCchhccccc-
Confidence 000 0 0 00011222222 22221 2344444444433 11 0111135567777554110
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCC-CeEEEEEcCcccCcCChhh
Q 012412 248 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSD-QHFLWVVRESEQAKLPKKF 326 (464)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~ 326 (464)
+.. ..+++.|+|++|..... .+.+++++++ .++++. +... . ..
T Consensus 186 ----------------------~~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-~--~~-- 229 (318)
T PF13528_consen 186 ----------------------ELP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-A--DP-- 229 (318)
T ss_pred ----------------------ccC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-c--cc--
Confidence 000 12456899999987632 6677787776 566655 4431 0 11
Q ss_pred hhhccCCCcEEEEecc--ChHHhhccccccceeccCChhHHHHHHHhCCcEeccCC--ccchhhHHHHHHhHhcceeecc
Q 012412 327 SDETLTSHKSLVVSWC--PQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQ--WSDQSTNAKYILDVWKTGLKFP 402 (464)
Q Consensus 327 ~~~~~~~~nv~~~~~~--p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~--~~DQ~~na~rl~~~~G~g~~l~ 402 (464)
.++|+.+.+|. ...++|+.|++ +|+|||+||++|++++|+|+|++|. ..||..||++++++ |+|..++
T Consensus 230 -----~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~ 301 (318)
T PF13528_consen 230 -----RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLS 301 (318)
T ss_pred -----cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEcc
Confidence 46899999987 34589999999 9999999999999999999999999 67999999999999 9999998
Q ss_pred --CcCHHHHHHHHHHH
Q 012412 403 --IVKRDAIADCISEI 416 (464)
Q Consensus 403 --~~~~~~l~~~i~~l 416 (464)
+++++.|.++|+++
T Consensus 302 ~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 302 QEDLTPERLAEFLERL 317 (318)
T ss_pred cccCCHHHHHHHHhcC
Confidence 99999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=3.1e-23 Score=196.75 Aligned_cols=311 Identities=18% Similarity=0.204 Sum_probs=197.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGI-KVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh-~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+... ....++.++.++.+... ...........++.+
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l--~~~~~~~~~~I~~~~~~-~~~~~~~~~~~~~~~ 77 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFL--VKQYGIEFELIPSGGLR-RKGSLKLLKAPFKLL 77 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeee--ccccCceEEEEeccccc-ccCcHHHHHHHHHHH
Confidence 36788888889999999999999999999 688887665555444 23447888888744322 111111122222222
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCCch--hhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeC
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILL 170 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (464)
.. ....+.+++++ +| |+||+...+ ..+..+|..+|||.++..+.. .
T Consensus 78 ~~--~~~a~~il~~~----kP-d~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~-------------------------~ 125 (357)
T COG0707 78 KG--VLQARKILKKL----KP-DVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA-------------------------V 125 (357)
T ss_pred HH--HHHHHHHHHHc----CC-CEEEecCCccccHHHHHHHhCCCCEEEEecCC-------------------------C
Confidence 21 12244555554 56 999996555 446888999999999876654 3
Q ss_pred CCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeec-ccCCCcccccc
Q 012412 171 PGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIG-PTIPSFYLDKQ 249 (464)
Q Consensus 171 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vg-p~~~~~~~~~~ 249 (464)
||. .++++. + .++.+ ..+|+..+. .....++..+| |+.+++.
T Consensus 126 ~G~--------------------ank~~~-~------~a~~V-~~~f~~~~~-----~~~~~~~~~tG~Pvr~~~~---- 168 (357)
T COG0707 126 PGL--------------------ANKILS-K------FAKKV-ASAFPKLEA-----GVKPENVVVTGIPVRPEFE---- 168 (357)
T ss_pred cch--------------------hHHHhH-H------hhcee-eeccccccc-----cCCCCceEEecCcccHHhh----
Confidence 333 223322 1 11222 222221110 00000255555 2222211
Q ss_pred ccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC--CCeEEEEEcCcccCcCChhhh
Q 012412 250 IEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFS 327 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~ 327 (464)
. ++.....+... .++++|+|.-||.... .+-+.+.+++..+ +.+++..++....+.....+.
T Consensus 169 ------------~-~~~~~~~~~~~-~~~~~ilV~GGS~Ga~--~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~ 232 (357)
T COG0707 169 ------------E-LPAAEVRKDGR-LDKKTILVTGGSQGAK--ALNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYN 232 (357)
T ss_pred ------------c-cchhhhhhhcc-CCCcEEEEECCcchhH--HHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHh
Confidence 0 01111111111 2678999999998731 2222233333333 467777777654332322221
Q ss_pred hhccCCCc-EEEEeccChH-HhhccccccceeccCChhHHHHHHHhCCcEeccCCc----cchhhHHHHHHhHhcceeec
Q 012412 328 DETLTSHK-SLVVSWCPQL-EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQW----SDQSTNAKYILDVWKTGLKF 401 (464)
Q Consensus 328 ~~~~~~~n-v~~~~~~p~~-~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~----~DQ~~na~rl~~~~G~g~~l 401 (464)
..+ +.+.+|..++ .+++.+|+ |||++|.+|+.|++++|+|++.+|.. .||..||..+++. |.|..+
T Consensus 233 -----~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i 304 (357)
T COG0707 233 -----ELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVI 304 (357)
T ss_pred -----hcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEe
Confidence 122 7888999887 99999999 99999999999999999999999963 4899999999999 999999
Q ss_pred c--CcCHHHHHHHHHHHhcCC
Q 012412 402 P--IVKRDAIADCISEILEGE 420 (464)
Q Consensus 402 ~--~~~~~~l~~~i~~ll~~~ 420 (464)
. +++++.|.+.|.++++++
T Consensus 305 ~~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 305 RQSELTPEKLAELILRLLSNP 325 (357)
T ss_pred ccccCCHHHHHHHHHHHhcCH
Confidence 8 899999999999999984
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=2.7e-23 Score=198.50 Aligned_cols=309 Identities=15% Similarity=0.126 Sum_probs=174.0
Q ss_pred EEEE-EcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCce-EEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 15 HCLV-LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIP-LEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 15 ~il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
||+| ++..|.||+.|.++|+++|.+ ||+|+|++.......+. ..++. +..+|. ......+..-+....+...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~----~~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~ 74 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYIS----KYGFKVFETFPG-IKLKGEDGKVNIVKTLRNK 74 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhh----hhcCcceeccCC-ceEeecCCcCcHHHHHHhh
Confidence 5777 556677999999999999999 99999999877444444 33443 333321 1110111111122222110
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCCC
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPG 172 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~ 172 (464)
.......+.+.++.+. +.+| |+||+| +.+.+..+|+.+|||++.+..+.... .|+
T Consensus 75 ~~~~~~~~~~~~~~l~-~~~p-DlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~----------------------~~~ 129 (321)
T TIGR00661 75 EYSPKKAIRREINIIR-EYNP-DLIISD-FEYSTVVAAKLLKIPVICISNQNYTR----------------------YPL 129 (321)
T ss_pred ccccHHHHHHHHHHHH-hcCC-CEEEEC-CchHHHHHHHhcCCCEEEEecchhhc----------------------CCc
Confidence 0111123334434333 3356 999999 66667889999999999776543110 111
Q ss_pred CCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCccccccccC
Q 012412 173 MPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDKQIED 252 (464)
Q Consensus 173 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~ 252 (464)
. . +......+... ..+ ....+...+..++.... ..| +.... .+
T Consensus 130 ~-----------~---~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~--------~~p-----~~~~~------~~- 172 (321)
T TIGR00661 130 K-----------T---DLIVYPTMAAL-RIF--NERCERFIVPDYPFPYT--------ICP-----KIIKN------ME- 172 (321)
T ss_pred c-----------c---chhHHHHHHHH-HHh--ccccceEeeecCCCCCC--------CCc-----ccccc------CC-
Confidence 0 0 00011111122 111 12222332232221110 000 00000 00
Q ss_pred cccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccC
Q 012412 253 DKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLT 332 (464)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 332 (464)
.+. ...+...+.. .+++.|++.+|+.. ...+++++++.+. +.++++.. +...+. .
T Consensus 173 -----~~~---~~~~~~~~~~--~~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~--~~~~~~------~ 227 (321)
T TIGR00661 173 -----GPL---IRYDVDDVDN--YGEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSY--EVAKNS------Y 227 (321)
T ss_pred -----Ccc---cchhhhcccc--CCCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCC--CCCccc------c
Confidence 000 0111112221 23557888887753 2345677777654 22333222 111111 5
Q ss_pred CCcEEEEeccC--hHHhhccccccceeccCChhHHHHHHHhCCcEeccCCcc--chhhHHHHHHhHhcceeeccCcCHHH
Q 012412 333 SHKSLVVSWCP--QLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVKRDA 408 (464)
Q Consensus 333 ~~nv~~~~~~p--~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~rl~~~~G~g~~l~~~~~~~ 408 (464)
++|+.+.+|.| ..++|+.|++ ||||||.+|++||+++|+|++++|... ||..||+.+++. |+|+.++..+. +
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~~~-~ 303 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYKEL-R 303 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChhhH-H
Confidence 68999999997 3488999999 999999999999999999999999855 899999999999 99999982233 6
Q ss_pred HHHHHHHHhcCC
Q 012412 409 IADCISEILEGE 420 (464)
Q Consensus 409 l~~~i~~ll~~~ 420 (464)
+.+++.+++.|+
T Consensus 304 ~~~~~~~~~~~~ 315 (321)
T TIGR00661 304 LLEAILDIRNMK 315 (321)
T ss_pred HHHHHHhccccc
Confidence 666776777775
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.88 E-value=4.5e-20 Score=179.61 Aligned_cols=324 Identities=15% Similarity=0.128 Sum_probs=190.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc--cccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY--KSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (464)
+|||+|+..+..||...++.|+++|.++||+|++++.+... +... ..++.++.++..-.. .......+.
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~----~~g~~~~~~~~~~~~-----~~~~~~~l~ 71 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVP----KAGIEFHFIPSGGLR-----RKGSLANLK 71 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccc----cCCCcEEEEeccCcC-----CCChHHHHH
Confidence 47999999888899999999999999999999999986531 1222 347777777632111 111122222
Q ss_pred HHHHhCcHHHHHHHHHhcCCCCCccEEEeCCc--hhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCce
Q 012412 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSI--LLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEI 168 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 168 (464)
..... ...+..+.+.+.+ .+| |+|++... ...+..+++..++|.+......
T Consensus 72 ~~~~~-~~~~~~~~~~ik~-~~p-Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------ 124 (357)
T PRK00726 72 APFKL-LKGVLQARKILKR-FKP-DVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------------------ 124 (357)
T ss_pred HHHHH-HHHHHHHHHHHHh-cCC-CEEEECCCcchhHHHHHHHHcCCCEEEEcCCC------------------------
Confidence 11111 1122233222322 245 99999853 2445667888999987531110
Q ss_pred eCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCccccc
Q 012412 169 LLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDK 248 (464)
Q Consensus 169 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~ 248 (464)
++ ....+++. ..++.+++.+...+. . ....++..+|+-+.....
T Consensus 125 -~~--------------------~~~~r~~~-------~~~d~ii~~~~~~~~----~--~~~~~i~vi~n~v~~~~~-- 168 (357)
T PRK00726 125 -VP--------------------GLANKLLA-------RFAKKVATAFPGAFP----E--FFKPKAVVTGNPVREEIL-- 168 (357)
T ss_pred -Cc--------------------cHHHHHHH-------HHhchheECchhhhh----c--cCCCCEEEECCCCChHhh--
Confidence 00 01122222 233444444322111 1 111246777644332110
Q ss_pred cccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCC--eEEEEEcCcccCcCChhh
Q 012412 249 QIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQ--HFLWVVRESEQAKLPKKF 326 (464)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~ 326 (464)
.+.... .+ +...++.++|++..|+... ......+.++++++.. .+++.+|.... +++
T Consensus 169 -------------~~~~~~-~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~----~~~ 227 (357)
T PRK00726 169 -------------ALAAPP-AR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDL----EEV 227 (357)
T ss_pred -------------cccchh-hh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcH----HHH
Confidence 000000 11 1222344566665555421 1223333366555433 44556665433 222
Q ss_pred hhhccCCCcEEEEeccC-hHHhhccccccceeccCChhHHHHHHHhCCcEeccCC----ccchhhHHHHHHhHhcceeec
Q 012412 327 SDETLTSHKSLVVSWCP-QLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQ----WSDQSTNAKYILDVWKTGLKF 401 (464)
Q Consensus 327 ~~~~~~~~nv~~~~~~p-~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~rl~~~~G~g~~l 401 (464)
.+.....-++.+.+|+. ..++++.+|+ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+. |.|..+
T Consensus 228 ~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~ 304 (357)
T PRK00726 228 RAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLI 304 (357)
T ss_pred HHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEE
Confidence 22211112388899994 4599999999 9999999999999999999999996 36899999999999 999999
Q ss_pred c--CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 012412 402 P--IVKRDAIADCISEILEGERGKELRRNAGKWRKL 435 (464)
Q Consensus 402 ~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~ 435 (464)
+ +++++.|.+++.++++|+ +.+++..+-+.+
T Consensus 305 ~~~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~ 337 (357)
T PRK00726 305 PQSDLTPEKLAEKLLELLSDP---ERLEAMAEAARA 337 (357)
T ss_pred EcccCCHHHHHHHHHHHHcCH---HHHHHHHHHHHh
Confidence 7 668999999999999996 555544444333
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.85 E-value=5e-19 Score=171.85 Aligned_cols=315 Identities=17% Similarity=0.155 Sum_probs=184.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 94 (464)
+|++...+..||....+.+++.|.++||+|++++......... ....++.++.++..-.. .......+..+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 73 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARL--VPKAGIPLHTIPVGGLR-----RKGSLKKLKAPFK 73 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhc--ccccCCceEEEEecCcC-----CCChHHHHHHHHH
Confidence 5888888888999999999999999999999998754322111 11245777777632111 1111122222211
Q ss_pred hCcHHHHHHHHHhcCCCCCccEEEeCCc--hhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCCC
Q 012412 95 IGPQTLTELVEKMNGSDSPVDCIVYDSI--LLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPG 172 (464)
Q Consensus 95 ~~~~~l~~~~~~l~~~~~p~DlVI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~ 172 (464)
. ...+..+.+.+. +.+| |+|+++.. ...+..+|...|+|++...... ++
T Consensus 74 ~-~~~~~~~~~~i~-~~~p-DvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-------------------------~~- 124 (350)
T cd03785 74 L-LKGVLQARKILK-KFKP-DVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-------------------------VP- 124 (350)
T ss_pred H-HHHHHHHHHHHH-hcCC-CEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-------------------------Cc-
Confidence 1 111112222222 2245 99998643 3446778899999987631110 00
Q ss_pred CCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCccccccccC
Q 012412 173 MPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDKQIED 252 (464)
Q Consensus 173 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~~ 252 (464)
.....++. ...+.+++.+....+. .+ ..++..+|+-+....
T Consensus 125 -------------------~~~~~~~~-------~~~~~vi~~s~~~~~~-----~~-~~~~~~i~n~v~~~~------- 165 (350)
T cd03785 125 -------------------GLANRLLA-------RFADRVALSFPETAKY-----FP-KDKAVVTGNPVREEI------- 165 (350)
T ss_pred -------------------cHHHHHHH-------HhhCEEEEcchhhhhc-----CC-CCcEEEECCCCchHH-------
Confidence 00111111 3345666665432221 11 114566664332210
Q ss_pred cccccccccccchhHHHHHhhcCCCCceEEEEecccccCC-HHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhcc
Q 012412 253 DKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELK-AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETL 331 (464)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 331 (464)
..+ ... ...+...+++++|++..|+..... .+.+..++..+.+.+..+++.+|....+.+.+.. +.
T Consensus 166 --------~~~-~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~-~~-- 232 (350)
T cd03785 166 --------LAL-DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAY-EE-- 232 (350)
T ss_pred --------hhh-hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHH-hc--
Confidence 000 011 222222234555666556553211 1222233333433344556666554222222111 11
Q ss_pred CCCcEEEEecc-ChHHhhccccccceeccCChhHHHHHHHhCCcEeccCC----ccchhhHHHHHHhHhcceeecc--Cc
Q 012412 332 TSHKSLVVSWC-PQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQ----WSDQSTNAKYILDVWKTGLKFP--IV 404 (464)
Q Consensus 332 ~~~nv~~~~~~-p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~rl~~~~G~g~~l~--~~ 404 (464)
..+|+.+.+|+ ...++|+.+|+ +|+++|.+|+.||+++|+|+|+.|. ..+|..|+..+.+. |+|..++ +.
T Consensus 233 ~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~~~ 309 (350)
T cd03785 233 LGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQEEL 309 (350)
T ss_pred cCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecCCC
Confidence 23689999998 44589999999 9999999999999999999999885 46899999999999 9999988 46
Q ss_pred CHHHHHHHHHHHhcCC
Q 012412 405 KRDAIADCISEILEGE 420 (464)
Q Consensus 405 ~~~~l~~~i~~ll~~~ 420 (464)
+.++|.+++.++++|+
T Consensus 310 ~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 310 TPERLAAALLELLSDP 325 (350)
T ss_pred CHHHHHHHHHHHhcCH
Confidence 9999999999999885
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.80 E-value=3.7e-17 Score=158.61 Aligned_cols=310 Identities=15% Similarity=0.108 Sum_probs=173.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFW 93 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (464)
|||+|+..+..||+.....|+++|.++||+|++++.+.....-. ....++.++.++..-. ........+....
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~--~~~~g~~~~~i~~~~~-----~~~~~~~~l~~~~ 73 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRL--VPKAGIEFYFIPVGGL-----RRKGSFRLIKTPL 73 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcc--cccCCCceEEEeccCc-----CCCChHHHHHHHH
Confidence 48999999999999988899999999999999998744221110 0135677777763211 1112222232222
Q ss_pred HhCcHHHHHHHHHhcCCCCCccEEEeCCch--hhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCC
Q 012412 94 QIGPQTLTELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLP 171 (464)
Q Consensus 94 ~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p 171 (464)
.. ...+..+.+-+. +.+| |+|++.... ..+..+++..++|.+...... .
T Consensus 74 ~~-~~~~~~l~~~i~-~~~p-DvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~-------------------------~- 124 (348)
T TIGR01133 74 KL-LKAVFQARRILK-KFKP-DAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA-------------------------V- 124 (348)
T ss_pred HH-HHHHHHHHHHHH-hcCC-CEEEEcCCcccHHHHHHHHHcCCCEEEECCCC-------------------------C-
Confidence 11 112222222222 2245 999997543 335567888999987421100 0
Q ss_pred CCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCcccccccc
Q 012412 172 GMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDKQIE 251 (464)
Q Consensus 172 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~~ 251 (464)
.....+++. +..+.+++.+...-+. + ....||.-+.....
T Consensus 125 -------------------~~~~~~~~~-------~~~d~ii~~~~~~~~~-----~----~~~~i~n~v~~~~~----- 164 (348)
T TIGR01133 125 -------------------PGLTNKLLS-------RFAKKVLISFPGAKDH-----F----EAVLVGNPVRQEIR----- 164 (348)
T ss_pred -------------------ccHHHHHHH-------HHhCeeEECchhHhhc-----C----CceEEcCCcCHHHh-----
Confidence 011122222 3445666655332111 1 23445532221000
Q ss_pred CcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHh---hCCCeEEEEEcCcccCcCChhhhh
Q 012412 252 DDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLK---SSDQHFLWVVRESEQAKLPKKFSD 328 (464)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~~~~~ 328 (464)
.+. .. ...+...+++++|.+..|+... ......+.++++ +.+.++++..++... +.+.+
T Consensus 165 ----------~~~-~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~----~~l~~ 226 (348)
T TIGR01133 165 ----------SLP-VP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKNDL----EKVKN 226 (348)
T ss_pred ----------ccc-ch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcchH----HHHHH
Confidence 000 00 1122222234444443344432 122222334443 334566655554322 22222
Q ss_pred hccCCCcEEEEecc--ChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCc---cchhhHHHHHHhHhcceeecc-
Q 012412 329 ETLTSHKSLVVSWC--PQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQW---SDQSTNAKYILDVWKTGLKFP- 402 (464)
Q Consensus 329 ~~~~~~nv~~~~~~--p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~---~DQ~~na~rl~~~~G~g~~l~- 402 (464)
.....+-..++.|. ....+|+.+|+ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+++. |.|..++
T Consensus 227 ~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~ 303 (348)
T TIGR01133 227 VYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQ 303 (348)
T ss_pred HHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEec
Confidence 11111111223333 45699999999 99999988999999999999998863 4788899999999 9999887
Q ss_pred -CcCHHHHHHHHHHHhcCC
Q 012412 403 -IVKRDAIADCISEILEGE 420 (464)
Q Consensus 403 -~~~~~~l~~~i~~ll~~~ 420 (464)
+.++++|.+++.++++|+
T Consensus 304 ~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 304 KELLPEKLLEALLKLLLDP 322 (348)
T ss_pred ccCCHHHHHHHHHHHHcCH
Confidence 568999999999999886
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.79 E-value=5.2e-17 Score=146.79 Aligned_cols=339 Identities=15% Similarity=0.151 Sum_probs=201.0
Q ss_pred CCCCcEEEEEcCC--CccChHHHHHHHHHHHhC--CCeEEEEeCcccccccccCCCCCCceEEEccCCCCC-----CCCC
Q 012412 10 SCKLAHCLVLTYP--GQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDE-----GGYA 80 (464)
Q Consensus 10 ~~~~~~il~~~~~--~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~ 80 (464)
.++++||+|++.. |-||+-+++.+|++|++. |.+|++++......... ...|+.|+.+|.-... ...+
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~---~~~gVd~V~LPsl~k~~~G~~~~~d 82 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP---GPAGVDFVKLPSLIKGDNGEYGLVD 82 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC---CcccCceEecCceEecCCCceeeee
Confidence 3456799987776 459999999999999998 99999999987766666 3589999999842211 0122
Q ss_pred CccCHHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCccc
Q 012412 81 QAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLE 160 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 160 (464)
...+..++.+ + -++++-.-.+..+| |++|+|.+-. |. .-+. .|.+- ++.....
T Consensus 83 ~~~~l~e~~~-~-------Rs~lil~t~~~fkP-Di~IVd~~P~-Gl-r~EL--~ptL~-------------yl~~~~t- 135 (400)
T COG4671 83 LDGDLEETKK-L-------RSQLILSTAETFKP-DIFIVDKFPF-GL-RFEL--LPTLE-------------YLKTTGT- 135 (400)
T ss_pred cCCCHHHHHH-H-------HHHHHHHHHHhcCC-CEEEEecccc-ch-hhhh--hHHHH-------------HHhhcCC-
Confidence 2233333222 1 12333333344477 9999995543 41 1110 11110 0000000
Q ss_pred CCCCCCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHH--HHhcC-Ceeee
Q 012412 161 LPLTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEW--LRKTW-SLRTI 237 (464)
Q Consensus 161 ~p~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~--~~~~~-~~~~v 237 (464)
..+-++ -...|.+....+..........+. + -.|.+++...+.+....-.+ .+... .+.++
T Consensus 136 -------~~vL~l--r~i~D~p~~~~~~w~~~~~~~~I~-r------~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~yt 199 (400)
T COG4671 136 -------RLVLGL--RSIRDIPQELEADWRRAETVRLIN-R------FYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYT 199 (400)
T ss_pred -------cceeeh--HhhhhchhhhccchhhhHHHHHHH-H------hheEEEEecCccccChhhcCCccHhhhhheeEe
Confidence 000011 011111111111000111112222 1 22466677766554322111 11111 47788
Q ss_pred cccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhh---CCCeEEEEE
Q 012412 238 GPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKS---SDQHFLWVV 314 (464)
Q Consensus 238 gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~ 314 (464)
|-+ ..- +|.... |. ... +.+-.|+||.|... ...+++...++|-.. +....++++
T Consensus 200 G~v-q~~-----~~~~~~-------p~-------~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivt 257 (400)
T COG4671 200 GFV-QRS-----LPHLPL-------PP-------HEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVT 257 (400)
T ss_pred EEe-ecc-----CcCCCC-------CC-------cCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEe
Confidence 865 220 111110 00 000 33446899888764 356777777776544 223366666
Q ss_pred cCcccCcCChhhhhhccCCCcEEEEeccChH-HhhccccccceeccCChhHHHHHHHhCCcEeccCCcc---chhhHHHH
Q 012412 315 RESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWS---DQSTNAKY 390 (464)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~---DQ~~na~r 390 (464)
|+...+.....+.+.+..-+++.+..|-.+. .++..++. +|+-||+||++|-|++|||.+++|... ||...|+|
T Consensus 258 GP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~R 335 (400)
T COG4671 258 GPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQR 335 (400)
T ss_pred CCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHH
Confidence 6643333333444442234899999998766 99999999 999999999999999999999999864 99999999
Q ss_pred HHhHhcceeecc--CcCHHHHHHHHHHHhcC
Q 012412 391 ILDVWKTGLKFP--IVKRDAIADCISEILEG 419 (464)
Q Consensus 391 l~~~~G~g~~l~--~~~~~~l~~~i~~ll~~ 419 (464)
++++ |+.-++. ++++..|+++|...+.-
T Consensus 336 l~~L-GL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 336 LEEL-GLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred HHhc-CcceeeCcccCChHHHHHHHHhcccC
Confidence 9999 9998887 99999999999999973
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=1.1e-16 Score=156.23 Aligned_cols=348 Identities=12% Similarity=0.048 Sum_probs=192.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFW 93 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (464)
.||++...++.||+.|. +|+++|.++|++|.|++.... .+++......+.+..++ ...+.+.++.+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~----------v~G~~~~l~~~~ 72 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELS----------VMGLREVLGRLG 72 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhh----------hccHHHHHHHHH
Confidence 47888999999999999 999999999999999987532 22200001122222222 111112222222
Q ss_pred HhCcHHHHHHHHHhcCCCCCccEEEeCCch-hh--HHHHHHHcCCccEEEec-chHHHHHHHhhhhcCcccCCCCCCcee
Q 012412 94 QIGPQTLTELVEKMNGSDSPVDCIVYDSIL-LW--ALDVAKKFGLLGAPFLT-QSCAVDYIYYHVKKGSLELPLTGNEIL 169 (464)
Q Consensus 94 ~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~-~~--~~~~A~~~giP~v~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (464)
.. ...+....+.+.+ .+| |+||.-... .. ...+|+.+|||++++.+ +.+.
T Consensus 73 ~~-~~~~~~~~~~l~~-~kP-d~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa----------------------- 126 (385)
T TIGR00215 73 RL-LKIRKEVVQLAKQ-AKP-DLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA----------------------- 126 (385)
T ss_pred HH-HHHHHHHHHHHHh-cCC-CEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh-----------------------
Confidence 21 1122233333333 256 999984432 22 33488999999987532 1100
Q ss_pred CCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHh-cCCeeeecccCCCccccc
Q 012412 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRK-TWSLRTIGPTIPSFYLDK 248 (464)
Q Consensus 170 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~-~~~~~~vgp~~~~~~~~~ 248 (464)
+. ....+.+. ...+.+++.+..+.+. +.. ..+..++|.-..+..
T Consensus 127 ------w~--------------~~~~r~l~-------~~~d~v~~~~~~e~~~-----~~~~g~~~~~vGnPv~~~~--- 171 (385)
T TIGR00215 127 ------WR--------------KWRAKKIE-------KATDFLLAILPFEKAF-----YQKKNVPCRFVGHPLLDAI--- 171 (385)
T ss_pred ------cC--------------cchHHHHH-------HHHhHhhccCCCcHHH-----HHhcCCCEEEECCchhhhc---
Confidence 00 00122222 2223334433322221 222 125667884433211
Q ss_pred cccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEEcCcccCcCC
Q 012412 249 QIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLP 323 (464)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~ 323 (464)
+. ..+...+..+.++..+++++|.+..||....-......++++++.+ +.++++..........-
T Consensus 172 --~~--------~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~ 241 (385)
T TIGR00215 172 --PL--------YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQF 241 (385)
T ss_pred --cc--------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHH
Confidence 00 0011233333333334667888888877532133445555554432 34555544332111111
Q ss_pred hhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEecc----CCcc---------chhhHHHH
Q 012412 324 KKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAM----PQWS---------DQSTNAKY 390 (464)
Q Consensus 324 ~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~----P~~~---------DQ~~na~r 390 (464)
+++.+.......+.+..+ ....+++.+|+ +|+-+|..|+ |++++|+|+|++ |+.. .|..|++.
T Consensus 242 ~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~ni 317 (385)
T TIGR00215 242 EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNI 317 (385)
T ss_pred HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHH
Confidence 222222112234444332 23479999999 9999999988 999999999998 7643 38889999
Q ss_pred HHhHhcceeecc--CcCHHHHHHHHHHHhcCC----c-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 012412 391 ILDVWKTGLKFP--IVKRDAIADCISEILEGE----R-GKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFV 454 (464)
Q Consensus 391 l~~~~G~g~~l~--~~~~~~l~~~i~~ll~~~----~-~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 454 (464)
+.+. ++...+. +++++.|.+.+.++|.|+ + .+.+++..+++.+.+. ++|.+.+..+.++
T Consensus 318 l~~~-~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~a~~i~ 383 (385)
T TIGR00215 318 LANR-LLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNADSERAAQAVL 383 (385)
T ss_pred hcCC-ccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHh
Confidence 9999 9988876 899999999999999886 3 2455555555555553 3455555554444
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.75 E-value=8.8e-17 Score=149.65 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=81.1
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhC--CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhcccccc
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATG 354 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~~~ 354 (464)
.+.|++++|..-. ......+++++++. +.++.+++|... +..+++.+.....+|+.+..+++++ ++|+.+|+
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~--~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl- 244 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN--PNLDELKKFAKEYPNIILFIDVENMAELMNEADL- 244 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC--cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE-
Confidence 3579999996543 22445666776654 457778777653 2233443332245689999999987 99999999
Q ss_pred ceeccCChhHHHHHHHhCCcEeccCCccchhhHHHH
Q 012412 355 CFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKY 390 (464)
Q Consensus 355 ~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r 390 (464)
+|++|| +|++|++++|+|+|++|...+|..||+.
T Consensus 245 -~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 245 -AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred -EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999999 9999999999999999999999999975
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.74 E-value=3.5e-16 Score=153.48 Aligned_cols=136 Identities=18% Similarity=0.268 Sum_probs=100.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhC-CCeEEEEEcCcccCcCChhhhhhcc-CCCcEEEEeccChH-Hhhcccc
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETL-TSHKSLVVSWCPQL-EVLAHEA 352 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~~p~~-~ll~~~~ 352 (464)
+++++|++..|+... .+.+..+++++.+. +.+++++.+.+. .+.+.+.+... .++|+.+.+|+++. +++..+|
T Consensus 200 ~~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~--~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD 275 (380)
T PRK13609 200 PNKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNE--ALKQSLEDLQETNPDALKVFGYVENIDELFRVTS 275 (380)
T ss_pred CCCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCH--HHHHHHHHHHhcCCCcEEEEechhhHHHHHHhcc
Confidence 356678887787653 12345566666554 467776665431 11222222110 34689999999875 8999999
Q ss_pred ccceeccCChhHHHHHHHhCCcEecc-CCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 353 TGCFVTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 353 ~~~vI~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+++. |+|+.. .+.++|.++|.++++|+
T Consensus 276 ~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~--~~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 276 C--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI--RDDEEVFAKTEALLQDD 339 (380)
T ss_pred E--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE--CCHHHHHHHHHHHHCCH
Confidence 9 99999988999999999999984 6777788999999999 998865 47899999999999986
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.69 E-value=4.6e-15 Score=145.63 Aligned_cols=136 Identities=15% Similarity=0.291 Sum_probs=101.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHH-hh-CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhcccc
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGL-KS-SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEA 352 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~ 352 (464)
+++++|++..|+... ...+..+++++ +. .+.++++++|+.. .+.+.+.+.....+++.+.+|+.+. +++..+|
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aD 275 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--ELKRSLTAKFKSNENVLILGYTKHMNEWMASSQ 275 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--HHHHHHHHHhccCCCeEEEeccchHHHHHHhhh
Confidence 456788888888762 23444455553 33 2457766665431 1223333222134689999999766 8999999
Q ss_pred ccceeccCChhHHHHHHHhCCcEecc-CCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 353 TGCFVTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 353 ~~~vI~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+ +|+.+|..|+.||+++|+|+|++ |..++|..|+..+++. |+|+... +.+++.++|.++++|+
T Consensus 276 l--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~--~~~~l~~~i~~ll~~~ 339 (391)
T PRK13608 276 L--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD--TPEEAIKIVASLTNGN 339 (391)
T ss_pred E--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC--CHHHHHHHHHHHhcCH
Confidence 9 99998888999999999999997 7777788999999999 9998764 7899999999999885
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.66 E-value=1.4e-14 Score=142.27 Aligned_cols=316 Identities=12% Similarity=0.082 Sum_probs=158.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
+|||+|...+..||+.|.+ ++++|.++++++.+++.... ...+.....++.++.++- ..+.+.+..+
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~----------~g~~~~~~~~ 67 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGCESLFDMEELAV----------MGLVEVLPRL 67 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCCccccCHHHhhh----------ccHHHHHHHH
Confidence 4699999999999999999 99999998887777764331 122000012222222221 0111222222
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCCch-hhH--HHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCcee
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSIL-LWA--LDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~-~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (464)
... ...+..+.+.+. +.+| |+|++-... .+. ..+|...|||++.+.+..
T Consensus 68 ~~~-~~~~~~~~~~l~-~~kP-divi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~------------------------- 119 (380)
T PRK00025 68 PRL-LKIRRRLKRRLL-AEPP-DVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS------------------------- 119 (380)
T ss_pred HHH-HHHHHHHHHHHH-HcCC-CEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc-------------------------
Confidence 111 111222222222 2356 999874332 233 334778899988652211
Q ss_pred CCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc-CCeeeecccCCCccccc
Q 012412 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT-WSLRTIGPTIPSFYLDK 248 (464)
Q Consensus 170 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~-~~~~~vgp~~~~~~~~~ 248 (464)
.+. + .......+. ...+.+++.+....+. +... .++.++|....+..
T Consensus 120 -------~~~--------~--~~~~~~~~~-------~~~d~i~~~~~~~~~~-----~~~~g~~~~~~G~p~~~~~--- 167 (380)
T PRK00025 120 -------VWA--------W--RQGRAFKIA-------KATDHVLALFPFEAAF-----YDKLGVPVTFVGHPLADAI--- 167 (380)
T ss_pred -------hhh--------c--CchHHHHHH-------HHHhhheeCCccCHHH-----HHhcCCCeEEECcCHHHhc---
Confidence 000 0 000111111 2234445554332221 2211 13566663222210
Q ss_pred cccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEEcCcccCcCC
Q 012412 249 QIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLP 323 (464)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~ 323 (464)
. ..+........+...+++++|++..||...........++++++.+ +.+++++.+... ..
T Consensus 168 --~---------~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~---~~ 233 (380)
T PRK00025 168 --P---------LLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK---RR 233 (380)
T ss_pred --c---------cccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh---hH
Confidence 0 0011233333333323456667767765422112334445544322 346666654221 11
Q ss_pred hhhhhhcc-C-CCcEEEEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCcc--------chhhH-----H
Q 012412 324 KKFSDETL-T-SHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWS--------DQSTN-----A 388 (464)
Q Consensus 324 ~~~~~~~~-~-~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~--------DQ~~n-----a 388 (464)
+.+.+... . .-++.+.+. .-..+++.+|+ +|+.+|.+++ ||+++|+|+|+.|... .|..| +
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (380)
T PRK00025 234 EQIEEALAEYAGLEVTLLDG-QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLP 309 (380)
T ss_pred HHHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehH
Confidence 22222110 1 123444321 23489999999 9999999888 9999999999985321 22222 2
Q ss_pred HHHHhHhcceeecc--CcCHHHHHHHHHHHhcCC
Q 012412 389 KYILDVWKTGLKFP--IVKRDAIADCISEILEGE 420 (464)
Q Consensus 389 ~rl~~~~G~g~~l~--~~~~~~l~~~i~~ll~~~ 420 (464)
+.+.+. +++..+. ..+++.|.+++.++++|+
T Consensus 310 ~~~~~~-~~~~~~~~~~~~~~~l~~~i~~ll~~~ 342 (380)
T PRK00025 310 NLLAGR-ELVPELLQEEATPEKLARALLPLLADG 342 (380)
T ss_pred HHhcCC-CcchhhcCCCCCHHHHHHHHHHHhcCH
Confidence 334444 4343333 789999999999999997
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.60 E-value=7.7e-17 Score=138.83 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=98.1
Q ss_pred eEEEEecccccCC-HHHHHHHHHHHhh--CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccC-hHHhhccccccc
Q 012412 280 VVYVSYGSFVELK-AEEMEELAWGLKS--SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCP-QLEVLAHEATGC 355 (464)
Q Consensus 280 ~v~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-~~~ll~~~~~~~ 355 (464)
+|+|+.||..... .+.+..+...+.. ...++++++|..........+.+ ...|+.+.+|++ ..+++..+|+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~---~~~~v~~~~~~~~m~~~m~~aDl-- 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVEN---FNPNVKVFGFVDNMAELMAAADL-- 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCC---TTCCCEEECSSSSHHHHHHHHSE--
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhc---cCCcEEEEechhhHHHHHHHcCE--
Confidence 5899999876310 1111122222222 24688888887644333333221 237899999999 6699999999
Q ss_pred eeccCChhHHHHHHHhCCcEeccCCcc----chhhHHHHHHhHhcceeecc--CcCHHHHHHHHHHHhcCC
Q 012412 356 FVTHCGWNSTMEALSLGVPMVAMPQWS----DQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGE 420 (464)
Q Consensus 356 vI~HgG~~s~~eal~~GvP~v~~P~~~----DQ~~na~rl~~~~G~g~~l~--~~~~~~l~~~i~~ll~~~ 420 (464)
+|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+. ..+.+.|.+.|.+++.++
T Consensus 76 vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 76 VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSDP 145 (167)
T ss_dssp EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCCH
T ss_pred EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcCc
Confidence 999999999999999999999999988 999999999999 9999998 777999999999999986
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.60 E-value=7.8e-13 Score=129.26 Aligned_cols=326 Identities=16% Similarity=0.097 Sum_probs=181.0
Q ss_pred CCccChHHHHHHHHHHHh--CCCeEE---EEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHH-h
Q 012412 22 PGQGHINPLLQFSRRLQH--KGIKVT---LVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ-I 95 (464)
Q Consensus 22 ~~~GH~~p~l~la~~L~~--rGh~V~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~ 95 (464)
.|+|-=.=.++||++|.+ .|++|. |++.....+.-. ....| .+..+|.+ ++.. ......++.... .
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~--ip~~g-~~~~~~sg----g~~~-~~~~~~~~~~~~gl 76 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLG--IPIIG-PTKELPSG----GFSY-QSLRGLLRDLRAGL 76 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCC--CceeC-CCCCCCCC----CccC-CCHHHHHHHHHhhH
Confidence 345555677889999998 699999 999876544222 11233 44455432 2322 233344433333 1
Q ss_pred CcH--HHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCCCC
Q 012412 96 GPQ--TLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPGM 173 (464)
Q Consensus 96 ~~~--~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~ 173 (464)
... ....+++++.. +| |+||+-.-+. +..+|...|+|++++.+.-... .+.+...
T Consensus 77 ~~~~~~~~~~~~~~~~--~p-~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~------~~~~~~~------------- 133 (396)
T TIGR03492 77 VGLTLGQWRALRKWAK--KG-DLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY------YWESGPR------------- 133 (396)
T ss_pred HHHHHHHHHHHHHHhh--cC-CEEEEECcHH-HHHHHHHcCCCceEEEeeccce------eecCCCC-------------
Confidence 111 12233444422 44 9999876665 8889999999999854432000 1111110
Q ss_pred CCCCCCCCCCccccCCC--CchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc-CCeeeecccCCCccccccc
Q 012412 174 PPLEPQDMPSFIHDLGS--YPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT-WSLRTIGPTIPSFYLDKQI 250 (464)
Q Consensus 174 p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~-~~~~~vgp~~~~~~~~~~~ 250 (464)
. ....++.++.. +..|..+.+ ..+.++.+++.... ..+.+... .++.++|-.+.+....
T Consensus 134 --~---~~~~~~~~~~G~~~~p~e~n~l-----~~~~a~~v~~~~~~-----t~~~l~~~g~k~~~vGnPv~d~l~~--- 195 (396)
T TIGR03492 134 --R---SPSDEYHRLEGSLYLPWERWLM-----RSRRCLAVFVRDRL-----TARDLRRQGVRASYLGNPMMDGLEP--- 195 (396)
T ss_pred --C---ccchhhhccCCCccCHHHHHHh-----hchhhCEEeCCCHH-----HHHHHHHCCCeEEEeCcCHHhcCcc---
Confidence 0 11111111110 011111111 22445555555532 22233332 3688999444332110
Q ss_pred cCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhC----CCeEEEEEcCcc-cCcCChh
Q 012412 251 EDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS----DQHFLWVVRESE-QAKLPKK 325 (464)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~-~~~~~~~ 325 (464)
. ... -+ .+++++|.+--||-...-...+..++++++.+ +.+|++.+.+.. .+.+.+.
T Consensus 196 ------------~-~~~---~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~ 257 (396)
T TIGR03492 196 ------------P-ERK---PL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAI 257 (396)
T ss_pred ------------c-ccc---cc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHH
Confidence 0 000 11 13456888888887532223344555555443 567888874432 1111111
Q ss_pred hhhhccC--------------CCcEEEEeccChH-HhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHH
Q 012412 326 FSDETLT--------------SHKSLVVSWCPQL-EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKY 390 (464)
Q Consensus 326 ~~~~~~~--------------~~nv~~~~~~p~~-~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r 390 (464)
+.+. .. .+++.+..+..+. ++++.+|+ +|+-+|..| .|++++|+|+|++|....|. |+..
T Consensus 258 l~~~-g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~ 332 (396)
T TIGR03492 258 LEDL-GWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGF 332 (396)
T ss_pred HHhc-CceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHH
Confidence 1100 01 1236666665444 89999999 999999877 99999999999999877787 9887
Q ss_pred HHh----HhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 391 ILD----VWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 391 l~~----~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+++ . |.+..+.+.+.+.|.+++.+++.|+
T Consensus 333 ~~~~~~l~-g~~~~l~~~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 333 AEAQSRLL-GGSVFLASKNPEQAAQVVRQLLADP 365 (396)
T ss_pred HHhhHhhc-CCEEecCCCCHHHHHHHHHHHHcCH
Confidence 776 3 5566666666799999999999986
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.59 E-value=4.5e-13 Score=131.32 Aligned_cols=146 Identities=18% Similarity=0.139 Sum_probs=100.1
Q ss_pred hHHHHHhhcCCCCceEEEEecccccCC-HHHHHHHHHHHh-----hCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEE
Q 012412 266 EACMKWLNDRAKESVVYVSYGSFVELK-AEEMEELAWGLK-----SSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVV 339 (464)
Q Consensus 266 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~ 339 (464)
+++.+-++-.+++++|++..|+..... ...+..+...+. ..+.++++.+|.+. .+.+.+.+. ....++++.
T Consensus 194 ~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~--~~~~~L~~~-~~~~~v~~~ 270 (382)
T PLN02605 194 DELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK--KLQSKLESR-DWKIPVKVR 270 (382)
T ss_pred HHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH--HHHHHHHhh-cccCCeEEE
Confidence 344444444345667777666554322 223333332221 23456667776541 122222221 123578999
Q ss_pred eccChH-HhhccccccceeccCChhHHHHHHHhCCcEeccCCccch-hhHHHHHHhHhcceeeccCcCHHHHHHHHHHHh
Q 012412 340 SWCPQL-EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQ-STNAKYILDVWKTGLKFPIVKRDAIADCISEIL 417 (464)
Q Consensus 340 ~~~p~~-~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ-~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll 417 (464)
+|+++. +++..+|+ +|+.+|.+|+.||+++|+|+|+.+....| ..|+..+.+. |.|... .++++|.++|.+++
T Consensus 271 G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~--~~~~~la~~i~~ll 345 (382)
T PLN02605 271 GFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS--ESPKEIARIVAEWF 345 (382)
T ss_pred eccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec--CCHHHHHHHHHHHH
Confidence 999866 99999999 99999999999999999999998765555 4799999999 999876 58999999999999
Q ss_pred cC
Q 012412 418 EG 419 (464)
Q Consensus 418 ~~ 419 (464)
.|
T Consensus 346 ~~ 347 (382)
T PLN02605 346 GD 347 (382)
T ss_pred cC
Confidence 87
No 44
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.48 E-value=1.8e-10 Score=113.72 Aligned_cols=328 Identities=17% Similarity=0.162 Sum_probs=170.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHH
Q 012412 24 QGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTEL 103 (464)
Q Consensus 24 ~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (464)
.|.-..+..|++.|+++||+|++++...............++.+..++..... ............. ....+
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~ 91 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAE--YLPKEELWPYLDE-------FADDL 91 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEeccccccc--CCChhhcchhHHH-------HHHHH
Confidence 47888999999999999999999986543322110112456777766532111 1111111111111 11222
Q ss_pred HHHhcCCCCCccEEEeCCch--hhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCCCCCCCCCCCC
Q 012412 104 VEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPGMPPLEPQDM 181 (464)
Q Consensus 104 ~~~l~~~~~p~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~p~~~~~~~ 181 (464)
++.+.....++|+|++.... ..+..+++.+++|++...+.... ......
T Consensus 92 ~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-----------------------------~~~~~~ 142 (398)
T cd03800 92 LRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGA-----------------------------VKRRHL 142 (398)
T ss_pred HHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeecccc-----------------------------cCCccc
Confidence 23232222235999997543 44667788999998764332100 000000
Q ss_pred CCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHH-hcCCeeeecccCCCccccccccCcccccccc
Q 012412 182 PSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLR-KTWSLRTIGPTIPSFYLDKQIEDDKDYGFSM 260 (464)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~-~~~~~~~vgp~~~~~~~~~~~~~~~~~~~~~ 260 (464)
.... . ...... .. .....+..++.+++.|....+. ...... ...++..|.+-+....
T Consensus 143 ~~~~---~-~~~~~~-~~-~~~~~~~~ad~ii~~s~~~~~~-~~~~~~~~~~~~~vi~ng~~~~~--------------- 200 (398)
T cd03800 143 GAAD---T-YEPARR-IE-AEERLLRAADRVIASTPQEAEE-LYSLYGAYPRRIRVVPPGVDLER--------------- 200 (398)
T ss_pred cccc---c-cchhhh-hh-HHHHHHhhCCEEEEcCHHHHHH-HHHHccccccccEEECCCCCccc---------------
Confidence 0000 0 000000 01 1112346678888888664433 111111 1111333332211100
Q ss_pred cccc--hhHHHHHhhcCCCCceEEEEeccccc-CCHHHHHHHHHHHhh--CCCeEEEEEcCcccCcCC------hhhhhh
Q 012412 261 FKSS--TEACMKWLNDRAKESVVYVSYGSFVE-LKAEEMEELAWGLKS--SDQHFLWVVRESEQAKLP------KKFSDE 329 (464)
Q Consensus 261 ~~~~--~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~------~~~~~~ 329 (464)
+.+. .......... +.+..+++..|+... -..+.+-..+..+.+ .+.+++++.++... ... ..+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~-~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~ 278 (398)
T cd03800 201 FTPYGRAEARRARLLR-DPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDD-ILAMDEEELRELARE 278 (398)
T ss_pred eecccchhhHHHhhcc-CCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCc-chhhhhHHHHHHHHh
Confidence 0110 0110111122 233467788888762 223333233333322 24566555544321 111 112222
Q ss_pred ccCCCcEEEEeccChH---Hhhccccccceecc----CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc
Q 012412 330 TLTSHKSLVVSWCPQL---EVLAHEATGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP 402 (464)
Q Consensus 330 ~~~~~nv~~~~~~p~~---~ll~~~~~~~vI~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~ 402 (464)
....+|+.+.+|+|+. .++..+++ +++. |-..++.||+++|+|+|+... ......+++. +.|...+
T Consensus 279 ~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~-~~g~~~~ 351 (398)
T cd03800 279 LGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDG-VTGLLVD 351 (398)
T ss_pred cCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCC-CCeEEeC
Confidence 2245789999999976 56889999 7743 223589999999999997663 3466678888 8899888
Q ss_pred CcCHHHHHHHHHHHhcCC
Q 012412 403 IVKRDAIADCISEILEGE 420 (464)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~ 420 (464)
..+.+++.++|.++++|+
T Consensus 352 ~~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 352 PRDPEALAAALRRLLTDP 369 (398)
T ss_pred CCCHHHHHHHHHHHHhCH
Confidence 668999999999999885
No 45
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.48 E-value=8e-11 Score=116.29 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=64.4
Q ss_pred CCcEEEEeccChH---Hhhccccccceec---cCCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcC
Q 012412 333 SHKSLVVSWCPQL---EVLAHEATGCFVT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVK 405 (464)
Q Consensus 333 ~~nv~~~~~~p~~---~ll~~~~~~~vI~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~ 405 (464)
.++|.+.+++|+. .++..+++ +|. +.|. .++.||+++|+|+|+.. .......+++. ..|..++..+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~~d 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDFFD 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCCCC
Confidence 4789999999976 57788998 653 2233 48899999999999754 44566777776 7788887678
Q ss_pred HHHHHHHHHHHhcCC
Q 012412 406 RDAIADCISEILEGE 420 (464)
Q Consensus 406 ~~~l~~~i~~ll~~~ 420 (464)
+++++++|.++++|+
T Consensus 353 ~~~la~~i~~ll~~~ 367 (396)
T cd03818 353 PDALAAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHHHHHhCH
Confidence 999999999999986
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.48 E-value=1e-10 Score=113.65 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=89.7
Q ss_pred CceEEEEeccccc-CCHHHHHHHHHHHhh-CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhcccc
Q 012412 278 ESVVYVSYGSFVE-LKAEEMEELAWGLKS-SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEA 352 (464)
Q Consensus 278 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~ 352 (464)
++.+++..|+... -..+.+-.++..+.. .+..+++...+... +.+. . ..+|+.+.+|+++. .++..+|
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~----~~~~-~--~~~~v~~~g~~~~~~~~~~~~~~d 268 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPAR----ARLE-A--RYPNVHFLGFLDGEELAAAYASAD 268 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchH----HHHh-c--cCCcEEEEeccCHHHHHHHHHhCC
Confidence 3467778887652 233444444444433 23455544433221 1121 1 56899999999876 5899999
Q ss_pred ccceeccCC----hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 353 TGCFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 353 ~~~vI~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+ +|+.+. .+++.||+++|+|+|+.+.. .+...+++. +.|...+..+.+++.+++.+++.|+
T Consensus 269 ~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~~~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 269 V--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEPGDAEAFAAALAALLADP 333 (364)
T ss_pred E--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCCCCHHHHHHHHHHHHcCH
Confidence 9 886654 47899999999999987744 466777888 8898888778899999999999986
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.45 E-value=1.5e-10 Score=113.30 Aligned_cols=135 Identities=21% Similarity=0.221 Sum_probs=85.6
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhhC-CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhccc
Q 012412 277 KESVVYVSYGSFVE-LKAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHE 351 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~ 351 (464)
.++.+++..|+... -..+.+-..+..+.+. +.++++...+.....+.+..... ..+|+.+.+++++. +++..+
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~--~~~~v~~~g~~~~~~~~~~~~~~ 295 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKAL--GLDNVTFLGRVPKEELPELLAAA 295 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHc--CCCcEEEeCCCChHHHHHHHHhh
Confidence 45578888888762 2344444444444433 45555443222111111110111 45799999999866 678899
Q ss_pred cccceeccCC---------hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 352 ATGCFVTHCG---------WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 352 ~~~~vI~HgG---------~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
++ +|.... .+++.||+++|+|+|+.+... ....+.+. +.|...+..+.+++.++|.+++.|+
T Consensus 296 di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~----~~~~~~~~-~~g~~~~~~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 296 DV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGE----SAELVEEA-GAGLVVPPGDPEALAAAILELLDDP 366 (394)
T ss_pred Ce--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCC----chhhhccC-CcceEeCCCCHHHHHHHHHHHHhCh
Confidence 99 663322 234799999999999887554 34445555 6777777568999999999999886
No 48
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.45 E-value=2.6e-10 Score=114.90 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=93.1
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhC-CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhcccccc
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATG 354 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~ 354 (464)
..+++..|++. ..+.+..+++++++. +.+++++-.+. ..+++.+.. ...||.+.+++++. .++..+|+
T Consensus 263 ~~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~----~~~~l~~~~-~~~~V~f~G~v~~~ev~~~~~~aDv- 334 (465)
T PLN02871 263 KPLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP----YREELEKMF-AGTPTVFTGMLQGDELSQAYASGDV- 334 (465)
T ss_pred CeEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh----HHHHHHHHh-ccCCeEEeccCCHHHHHHHHHHCCE-
Confidence 35667778775 345566677777765 45555444332 223333221 23689999999865 68999999
Q ss_pred ceeccCC----hhHHHHHHHhCCcEeccCCccchhhHHHHHHh---HhcceeeccCcCHHHHHHHHHHHhcCCc-hHHHH
Q 012412 355 CFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILD---VWKTGLKFPIVKRDAIADCISEILEGER-GKELR 426 (464)
Q Consensus 355 ~vI~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~---~~G~g~~l~~~~~~~l~~~i~~ll~~~~-~~~~~ 426 (464)
+|.-.. ..++.||+++|+|+|+.... .....+++ . +.|...+.-+.+++.++|.++++|++ .+++.
T Consensus 335 -~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~ 408 (465)
T PLN02871 335 -FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPGDVDDCVEKLETLLADPELRERMG 408 (465)
T ss_pred -EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCCCHHHHHHHHHHHHhCHHHHHHHH
Confidence 884332 35789999999999976532 34555666 7 78888886689999999999998862 12344
Q ss_pred HHHHH
Q 012412 427 RNAGK 431 (464)
Q Consensus 427 ~~a~~ 431 (464)
+++++
T Consensus 409 ~~a~~ 413 (465)
T PLN02871 409 AAARE 413 (465)
T ss_pred HHHHH
Confidence 44444
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.42 E-value=2.5e-10 Score=110.57 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=87.3
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhcccc
Q 012412 277 KESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEA 352 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~ 352 (464)
..+.+++..|+... -..+.+-..+..+.+.+.++++...+..... ..... ...+++.+.+|+++. .++..++
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~--~~~~~--~~~~~v~~~g~~~~~~~~~~~~~ad 264 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEE--ESYEL--EGDPRVEFLGAYPQEEIDDFYAEID 264 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhH--HHHhh--cCCCeEEEeCCCCHHHHHHHHHhCC
Confidence 44577788888752 2233333333333333456555543321111 11100 145899999999766 6799999
Q ss_pred ccceec----cCCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 353 TGCFVT----HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 353 ~~~vI~----HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+ +|+ ..|+ .++.||+++|+|+|+.+ .......+++. +.|...+..+.+++.+++.++++|+
T Consensus 265 ~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~----~~~~~e~i~~~-~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 265 V--LVVPSIWPENFPLVIREALAAGVPVIASD----IGGMAELVRDG-VNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred E--EEEcCcccCCCChHHHHHHHCCCCEEECC----CCCHHHHhcCC-CcEEEECCCCHHHHHHHHHHHHhCh
Confidence 9 773 2344 47899999999999865 34567777777 7888888667999999999999986
No 50
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.42 E-value=7.8e-10 Score=108.13 Aligned_cols=133 Identities=18% Similarity=0.244 Sum_probs=86.9
Q ss_pred CceEEEEecccccCCHHHHHHHHHHH----hhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhcccc
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGL----KSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEA 352 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~ 352 (464)
+..+++.+|.... .+.+..+++++ .+.+.++++...+.....+ ..........+++.+.++.++. .++..++
T Consensus 196 ~~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d 272 (371)
T cd04962 196 GEKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPA-ERLARELGLQDDVLFLGKQDHVEELLSIAD 272 (371)
T ss_pred CCeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHH-HHHHHHcCCCceEEEecCcccHHHHHHhcC
Confidence 3467777887762 23333333333 2345566555433222111 1122222245789999988755 8899999
Q ss_pred ccceec---c-CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 353 TGCFVT---H-CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 353 ~~~vI~---H-gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+ +|. + |...++.||+++|+|+|+.. ....+..+++. ..|...+..+.+++.+++.++++|+
T Consensus 273 ~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~~~~~~~l~~~i~~l~~~~ 337 (371)
T cd04962 273 L--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVDVGDVEAMAEYALSLLEDD 337 (371)
T ss_pred E--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcCCCCHHHHHHHHHHHHhCH
Confidence 9 772 2 33459999999999999854 44567777776 7787777668999999999999886
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.42 E-value=8e-10 Score=106.65 Aligned_cols=318 Identities=16% Similarity=0.125 Sum_probs=170.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccc-cccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKS-LHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFW 93 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (464)
||++++....|+......++++|.++||+|++++....... .. ..++.+..++..... ......+..+.
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~ 70 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE----ALGVKVIPIPLDRRG------INPFKDLKALL 70 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc----cCCceEEeccccccc------cChHhHHHHHH
Confidence 58887777789999999999999999999999998765542 22 556777777632211 11111111111
Q ss_pred HhCcHHHHHHHHHhcCCCCCccEEEeCCch--hhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCC
Q 012412 94 QIGPQTLTELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLP 171 (464)
Q Consensus 94 ~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p 171 (464)
.+...+++ .+| |+|++.... ..+..+++..+.|.++.........
T Consensus 71 -----~~~~~~~~----~~~-dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------- 117 (359)
T cd03808 71 -----RLYRLLRK----ERP-DIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV----------------------- 117 (359)
T ss_pred -----HHHHHHHh----cCC-CEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh-----------------------
Confidence 12233332 144 999987543 2244445546666665433220000
Q ss_pred CCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc-CCeeeecccCCCccccccc
Q 012412 172 GMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT-WSLRTIGPTIPSFYLDKQI 250 (464)
Q Consensus 172 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~-~~~~~vgp~~~~~~~~~~~ 250 (464)
... ... .......+. +. .....+.+++.|....+. ........ .....+.|...+..
T Consensus 118 ----~~~----~~~-----~~~~~~~~~-~~--~~~~~d~ii~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----- 175 (359)
T cd03808 118 ----FTS----GGL-----KRRLYLLLE-RL--ALRFTDKVIFQNEDDRDL-ALKLGIIKKKKTVLIPGSGVDLD----- 175 (359)
T ss_pred ----hcc----chh-----HHHHHHHHH-HH--HHhhccEEEEcCHHHHHH-HHHhcCCCcCceEEecCCCCChh-----
Confidence 000 000 111222222 11 224557888887654432 11111000 01222222211100
Q ss_pred cCcccccccccccchhHHHHHhhcCCCCceEEEEeccccc-CCHHHHHHHHHHHhh--CCCeEEEEEcCcccCcCChhhh
Q 012412 251 EDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVE-LKAEEMEELAWGLKS--SDQHFLWVVRESEQAKLPKKFS 327 (464)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~ 327 (464)
. +.+.... ...++.+++..|+... -..+.+-+.+..+.+ .+.++++...+...........
T Consensus 176 ----~-----~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~ 239 (359)
T cd03808 176 ----R-----FSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEI 239 (359)
T ss_pred ----h-----cCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHH
Confidence 0 0000000 1234578888888762 234444444444443 2345544433322111111001
Q ss_pred hhccCCCcEEEEeccChH-HhhccccccceeccCC----hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc
Q 012412 328 DETLTSHKSLVVSWCPQL-EVLAHEATGCFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP 402 (464)
Q Consensus 328 ~~~~~~~nv~~~~~~p~~-~ll~~~~~~~vI~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~ 402 (464)
......++|.+.++..+. .++..+++ +|.-+. .+++.||+++|+|+|+.+.. .....+++. +.|...+
T Consensus 240 ~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~ 312 (359)
T cd03808 240 EKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVP 312 (359)
T ss_pred HhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEEC
Confidence 121245789998885544 89999999 775432 57899999999999986543 445666767 7888877
Q ss_pred CcCHHHHHHHHHHHhcCC
Q 012412 403 IVKRDAIADCISEILEGE 420 (464)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~ 420 (464)
.-+.+++.+++.+++.|+
T Consensus 313 ~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 313 PGDAEALADAIERLIEDP 330 (359)
T ss_pred CCCHHHHHHHHHHHHhCH
Confidence 668999999999999886
No 52
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.41 E-value=1.1e-09 Score=108.88 Aligned_cols=143 Identities=11% Similarity=0.081 Sum_probs=85.2
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhC----CCeEEEEEcCcccCcCChhhh---hhccCCCcEEEEeccChH---Hh
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLKSS----DQHFLWVVRESEQAKLPKKFS---DETLTSHKSLVVSWCPQL---EV 347 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~---~~~~~~~nv~~~~~~p~~---~l 347 (464)
++.+++..|+.. ..+-+..++++++.+ +.++++ +|.+. ..+.+. +.. ..+||.+.+|+|+. .+
T Consensus 228 ~~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~i-vG~g~---~~~~l~~~~~~~-~l~~v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 228 GKKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVI-CGQGG---GKARLEKMAQCR-GLPNVHFLPLQPYDRLPAL 300 (412)
T ss_pred CCEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEE-ECCCh---hHHHHHHHHHHc-CCCceEEeCCCCHHHHHHH
Confidence 346777788876 233444445554432 234443 33321 122222 221 22589999999876 67
Q ss_pred hccccccceeccCCh------hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCc
Q 012412 348 LAHEATGCFVTHCGW------NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGER 421 (464)
Q Consensus 348 l~~~~~~~vI~HgG~------~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~ 421 (464)
+..+|+.++.+..+. +.+.|++++|+|+|+....+. .....++ +.|+..+..+.++|+++|.++++|++
T Consensus 301 ~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~---~~G~~~~~~d~~~la~~i~~l~~~~~ 375 (412)
T PRK10307 301 LKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE---GIGVCVEPESVEALVAAIAALARQAL 375 (412)
T ss_pred HHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh---CCcEEeCCCCHHHHHHHHHHHHhCHH
Confidence 889998444444332 246899999999998764331 1122332 45777766689999999999998862
Q ss_pred -hHHHHHHHHHH
Q 012412 422 -GKELRRNAGKW 432 (464)
Q Consensus 422 -~~~~~~~a~~l 432 (464)
.+.+++++++.
T Consensus 376 ~~~~~~~~a~~~ 387 (412)
T PRK10307 376 LRPKLGTVAREY 387 (412)
T ss_pred HHHHHHHHHHHH
Confidence 23444555443
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.39 E-value=8.8e-10 Score=109.27 Aligned_cols=336 Identities=13% Similarity=0.036 Sum_probs=168.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
+.||.+++..-.|+-.++..+|+.|+++||+|++++....... .......++.++.++.... ........+..+
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~ 76 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEILSNPNITIHPLPPPPQ-----RLNKLPFLLFAP 76 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHHhcCCCEEEEECCCCcc-----ccccchHHHHHH
Confidence 4577777777778889999999999999999999997532211 1001256788888763210 111112222221
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCC-ch----hhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCc
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDS-IL----LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNE 167 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~-~~----~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 167 (464)
..... .+..++..+....+ +|+|++.. .. ..+..+++..++|.|.......... .
T Consensus 77 ~~~~~-~~~~~~~~l~~~~~-~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~------~------------ 136 (415)
T cd03816 77 LKVLW-QFFSLLWLLYKLRP-ADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTI------L------------ 136 (415)
T ss_pred HHHHH-HHHHHHHHHHhcCC-CCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHH------H------------
Confidence 11111 11222222222223 59999853 21 1244557778999887444321110 0
Q ss_pred eeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCcccc
Q 012412 168 ILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLD 247 (464)
Q Consensus 168 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~ 247 (464)
...... ......+..++. +. .+..++.+++.|...-+. ....-....++..|. +...
T Consensus 137 -------~~~~~~-------~~~~~~~~~~~e-~~--~~~~ad~ii~vS~~~~~~-l~~~~~~~~ki~vI~----Ng~~- 193 (415)
T cd03816 137 -------ALKLGE-------NHPLVRLAKWYE-KL--FGRLADYNLCVTKAMKED-LQQFNNWKIRATVLY----DRPP- 193 (415)
T ss_pred -------hcccCC-------CCHHHHHHHHHH-HH--HhhcCCEeeecCHHHHHH-HHhhhccCCCeeecC----CCCH-
Confidence 000000 000011222222 22 235678888888653332 111100001222221 1100
Q ss_pred ccccCcccccccccccchhH--HHHHhh----------------cCCCCceEEEEeccccc-CCHHHHHHHHHHHhh---
Q 012412 248 KQIEDDKDYGFSMFKSSTEA--CMKWLN----------------DRAKESVVYVSYGSFVE-LKAEEMEELAWGLKS--- 305 (464)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~--~~~~l~----------------~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~--- 305 (464)
.+ +.|.... ...+.. ..+++..++++.|.+.. -..+.+-..+..+++
T Consensus 194 ~~-----------f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~ 262 (415)
T cd03816 194 EQ-----------FRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAA 262 (415)
T ss_pred HH-----------ceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhc
Confidence 00 0111111 111110 11244567777787652 233333333333332
Q ss_pred -----CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEE-eccChH---Hhhccccccceec----c-C-C-hhHHHHHH
Q 012412 306 -----SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVV-SWCPQL---EVLAHEATGCFVT----H-C-G-WNSTMEAL 369 (464)
Q Consensus 306 -----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~~p~~---~ll~~~~~~~vI~----H-g-G-~~s~~eal 369 (464)
.+.+++++-.+...+.+. +..+.+.. +|+.+. +|+|.. ++|..+|+ +|. . | | -.++.||+
T Consensus 263 ~~~~~~~i~l~ivG~G~~~~~l~-~~~~~~~l-~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eam 338 (415)
T cd03816 263 TGPKLPKLLCIITGKGPLKEKYL-ERIKELKL-KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMF 338 (415)
T ss_pred ccccCCCEEEEEEecCccHHHHH-HHHHHcCC-CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHH
Confidence 123444443332222121 12222112 466655 688855 67889999 663 1 1 2 34799999
Q ss_pred HhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 370 SLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 370 ~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
++|+|+|+.. .......+++. +.|.... +.++|+++|.++++|
T Consensus 339 a~G~PVI~s~----~~~~~eiv~~~-~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 339 GCGLPVCALD----FKCIDELVKHG-ENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred HcCCCEEEeC----CCCHHHHhcCC-CCEEEEC--CHHHHHHHHHHHHhc
Confidence 9999999754 34666778888 8898874 899999999999988
No 54
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=1.4e-10 Score=102.40 Aligned_cols=148 Identities=18% Similarity=0.122 Sum_probs=115.8
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhccccccce
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATGCF 356 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~~~~v 356 (464)
..-|+|++|..- +..+.-+++..|++.++.+-+++++. .+-..+.+.++...+|+.+......+ .|+..|++ .
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--a 231 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--A 231 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--h
Confidence 335999998642 33466677788887776666777644 34445555554466888888777755 89999999 9
Q ss_pred eccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 012412 357 VTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP-IVKRDAIADCISEILEGERGKELRRNAGKWRKL 435 (464)
Q Consensus 357 I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~ 435 (464)
|+.||. |+.|++..|+|.+++|+..-|.-.|..++.+ |+-..+. .+..+.....+.++..|. ..|++...-.+.
T Consensus 232 I~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~~l~~~~~~~~~~~i~~d~---~~rk~l~~~~~~ 306 (318)
T COG3980 232 ISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGYHLKDLAKDYEILQIQKDY---ARRKNLSFGSKL 306 (318)
T ss_pred eeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccCCCchHHHHHHHHHhhhCH---HHhhhhhhccce
Confidence 998775 8999999999999999999999999999999 9888887 788889999999999997 667766554444
Q ss_pred H
Q 012412 436 A 436 (464)
Q Consensus 436 ~ 436 (464)
+
T Consensus 307 i 307 (318)
T COG3980 307 I 307 (318)
T ss_pred e
Confidence 4
No 55
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.37 E-value=1.9e-09 Score=113.95 Aligned_cols=377 Identities=14% Similarity=0.116 Sum_probs=198.8
Q ss_pred CCCcEEEEEcCCCc---------------cChHHHHHHHHHHHhCC--CeEEEEeCccccccc--------c--------
Q 012412 11 CKLAHCLVLTYPGQ---------------GHINPLLQFSRRLQHKG--IKVTLVTTRFFYKSL--------H-------- 57 (464)
Q Consensus 11 ~~~~~il~~~~~~~---------------GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~~--------~-------- 57 (464)
.+++.|++++..+. |+..-.+.||++|+++| |+|.++|....-..+ +
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 44678887765432 46667799999999998 899999975432211 0
Q ss_pred ----cCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHH----HHHhcC-CCCCccEEEeCCch--hhH
Q 012412 58 ----RDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTEL----VEKMNG-SDSPVDCIVYDSIL--LWA 126 (464)
Q Consensus 58 ----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~l~~-~~~p~DlVI~D~~~--~~~ 126 (464)
......|+..+.+|.+-.. .+-....++.++..|.......+..+ .+++.. ....||+|-+.... ..+
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~-~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRD-KYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSA 325 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCC-CCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHH
Confidence 0012348888888865432 22233344555555555444333322 222221 11125999998655 557
Q ss_pred HHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhc
Q 012412 127 LDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENI 206 (464)
Q Consensus 127 ~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (464)
..+++.+|||+|...++....- ..... ........ .....+. +...+. ..-..+
T Consensus 326 ~~L~~~lgVP~V~T~HSLgr~K--~~~ll---------------------~~g~~~~~-~~~~~y~-~~~Ri~-~Ee~~l 379 (1050)
T TIGR02468 326 ALLSGALNVPMVLTGHSLGRDK--LEQLL---------------------KQGRMSKE-EINSTYK-IMRRIE-AEELSL 379 (1050)
T ss_pred HHHHHhhCCCEEEECccchhhh--hhhhc---------------------cccccccc-ccccccc-hHHHHH-HHHHHH
Confidence 8889999999887655431110 00000 00000000 0000000 111111 112234
Q ss_pred cCCcEEEecchhhhhHHHHHHHHhc-----------------------CC--eeeecccCCCccccccccCcccc-----
Q 012412 207 DKADWVLCNTFYELEEEVVEWLRKT-----------------------WS--LRTIGPTIPSFYLDKQIEDDKDY----- 256 (464)
Q Consensus 207 ~~~~~~l~~s~~~l~~~~~~~~~~~-----------------------~~--~~~vgp~~~~~~~~~~~~~~~~~----- 256 (464)
..++.+++.|..+.+..+.- +... .+ +.+.|--...+. |.....
T Consensus 380 ~~Ad~VIasT~qE~~eq~~l-Y~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~-----P~~~~~~~~~~ 453 (1050)
T TIGR02468 380 DASEIVITSTRQEIEEQWGL-YDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIV-----PHDGDMDGETE 453 (1050)
T ss_pred HhcCEEEEeCHHHHHHHHHH-hccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHcc-----CCCccccchhc
Confidence 77889999998877753322 2100 01 222221111111 110000
Q ss_pred c-----ccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCC-----CeEEEEEcCccc-CcCC--
Q 012412 257 G-----FSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSD-----QHFLWVVRESEQ-AKLP-- 323 (464)
Q Consensus 257 ~-----~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~-~~~~-- 323 (464)
| .....+...++..|+.. +++ .++++.|.+. +.+-+..+++|+..+. ..+.+++|+... ..+.
T Consensus 454 ~~~~~~~~~~~~~~~~l~r~~~~-pdk-pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~ 529 (1050)
T TIGR02468 454 GNEEHPAKPDPPIWSEIMRFFTN-PRK-PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSG 529 (1050)
T ss_pred ccccccccccchhhHHHHhhccc-CCC-cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhcc
Confidence 0 00001113456666654 333 4667778775 3444555666654431 234444554221 1110
Q ss_pred --------hhhhhhccCCCcEEEEeccChH---Hhhccc----cccceecc---CCh-hHHHHHHHhCCcEeccCCccch
Q 012412 324 --------KKFSDETLTSHKSLVVSWCPQL---EVLAHE----ATGCFVTH---CGW-NSTMEALSLGVPMVAMPQWSDQ 384 (464)
Q Consensus 324 --------~~~~~~~~~~~nv~~~~~~p~~---~ll~~~----~~~~vI~H---gG~-~s~~eal~~GvP~v~~P~~~DQ 384 (464)
..+.+++.+.++|.+.+++++. .++..+ ++ ||.- =|+ .++.||+++|+|+|+...
T Consensus 530 ~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdv---- 603 (1050)
T TIGR02468 530 SSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKN---- 603 (1050)
T ss_pred chHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCC----
Confidence 1122333356889999999876 556655 46 7753 354 478999999999998764
Q ss_pred hhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCc-hHHHHHHHHH
Q 012412 385 STNAKYILDVWKTGLKFPIVKRDAIADCISEILEGER-GKELRRNAGK 431 (464)
Q Consensus 385 ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 431 (464)
......++.. ..|+.++..++++|+++|.+++.|++ .+++.+++.+
T Consensus 604 GG~~EII~~g-~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 604 GGPVDIHRVL-DNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred CCcHHHhccC-CcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 3344555566 67888876789999999999999863 1334444443
No 56
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.37 E-value=9.7e-14 Score=115.67 Aligned_cols=121 Identities=21% Similarity=0.318 Sum_probs=80.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHh
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQI 95 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (464)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+. ..|+.|.+++.. . ...........+..+...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~----~~Gl~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 73 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVE----AAGLEFVPIPGD--S-RLPRSLEPLANLRRLARL 73 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHH----HTT-EEEESSSC--G-GGGHHHHHHHHHHCHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccc----ccCceEEEecCC--c-CcCcccchhhhhhhHHHH
Confidence 789999999999999999999999999999999999999998 889999999854 1 111110111111111111
Q ss_pred --CcHHHHHHHHHh----c----CCCCCccEEEeCCchhhHHHHHHHcCCccEEEecch
Q 012412 96 --GPQTLTELVEKM----N----GSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 96 --~~~~l~~~~~~l----~----~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~ 144 (464)
....+.+.+++. . .... .|+++.+.....+..+|+++|||++.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 74 IRGLEEAMRILARFRPDLVVAAGGYVA-DDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHCTTTTE-CCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hhhhhHHHHHhhccCcchhhhccCccc-chHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 111122222221 1 1112 3888889888889999999999999876655
No 57
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.35 E-value=4e-09 Score=104.58 Aligned_cols=331 Identities=17% Similarity=0.128 Sum_probs=167.4
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHH
Q 012412 23 GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTE 102 (464)
Q Consensus 23 ~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (464)
..|--.-...||++|.++||+|+++++..............++.++.++..... .. ........+.......++.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~ 93 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYE-GL----DKEDLPTQLCAFTGGVLRA 93 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcc-cC----CHHHHHHHHHHHHHHHHHH
Confidence 357778899999999999999999997533211110012357777777532111 11 1111111111111112223
Q ss_pred HHHHhcCCCCCccEEEeCCch--hhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeCCCCCCCCCCC
Q 012412 103 LVEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPGMPPLEPQD 180 (464)
Q Consensus 103 ~~~~l~~~~~p~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~p~~~~~~ 180 (464)
.++... .++|+|.+.... ..+..+++.+++|+|.......... ...+ ....
T Consensus 94 ~~~~~~---~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~~~---~~~~---------------------~~~~ 146 (405)
T TIGR03449 94 EARHEP---GYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAAVK---NAAL---------------------ADGD 146 (405)
T ss_pred HhhccC---CCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHHHH---HHhc---------------------cCCC
Confidence 333221 235999887543 3456667889999876544331100 0000 0000
Q ss_pred CCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhc-CCeeeecccCCCccccccccCccccccc
Q 012412 181 MPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKT-WSLRTIGPTIPSFYLDKQIEDDKDYGFS 259 (464)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~-~~~~~vgp~~~~~~~~~~~~~~~~~~~~ 259 (464)
.. ......+.. ...+..++.+++.|....+. ........ .++..|..-+.. .
T Consensus 147 ~~--------~~~~~~~~e---~~~~~~~d~vi~~s~~~~~~-~~~~~~~~~~ki~vi~ngvd~---------------~ 199 (405)
T TIGR03449 147 TP--------EPEARRIGE---QQLVDNADRLIANTDEEARD-LVRHYDADPDRIDVVAPGADL---------------E 199 (405)
T ss_pred CC--------chHHHHHHH---HHHHHhcCeEEECCHHHHHH-HHHHcCCChhhEEEECCCcCH---------------H
Confidence 00 000111111 11236677888888654432 11111100 012222211100 0
Q ss_pred cccc-chhHHHHHhhcCCCCceEEEEecccccC-CHHHHHHHH-HHHhhC-C--CeEEEEEcCcccC-cCChhh---hhh
Q 012412 260 MFKS-STEACMKWLNDRAKESVVYVSYGSFVEL-KAEEMEELA-WGLKSS-D--QHFLWVVRESEQA-KLPKKF---SDE 329 (464)
Q Consensus 260 ~~~~-~~~~~~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~-~al~~~-~--~~~i~~~~~~~~~-~~~~~~---~~~ 329 (464)
.+.+ ........++. ++++.+++.+|++... ..+.+-..+ ...++. + ..++++.+..... ...+++ .+.
T Consensus 200 ~~~~~~~~~~~~~~~~-~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~ 278 (405)
T TIGR03449 200 RFRPGDRATERARLGL-PLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAE 278 (405)
T ss_pred HcCCCcHHHHHHhcCC-CCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHH
Confidence 0111 11222222222 2334677888887622 223322222 222322 2 3444433211111 111222 222
Q ss_pred ccCCCcEEEEeccChH---Hhhccccccceec---cCC-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc
Q 012412 330 TLTSHKSLVVSWCPQL---EVLAHEATGCFVT---HCG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP 402 (464)
Q Consensus 330 ~~~~~nv~~~~~~p~~---~ll~~~~~~~vI~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~ 402 (464)
....+||.+.+++|.. +++..+|+ +|. +.| ..++.||+++|+|+|+... ......+++. +.|...+
T Consensus 279 ~~l~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~ 351 (405)
T TIGR03449 279 LGIADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVD 351 (405)
T ss_pred cCCCceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECC
Confidence 2245789999999865 78999999 763 234 3589999999999998653 3455566677 7788877
Q ss_pred CcCHHHHHHHHHHHhcCC
Q 012412 403 IVKRDAIADCISEILEGE 420 (464)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~ 420 (464)
.-+.++++++|.++++++
T Consensus 352 ~~d~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 352 GHDPADWADALARLLDDP 369 (405)
T ss_pred CCCHHHHHHHHHHHHhCH
Confidence 668999999999999886
No 58
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.34 E-value=1.2e-09 Score=106.25 Aligned_cols=135 Identities=18% Similarity=0.270 Sum_probs=86.9
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhh--CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhcc
Q 012412 277 KESVVYVSYGSFVE-LKAEEMEELAWGLKS--SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAH 350 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~ 350 (464)
+++.+++..|+... -..+.+-.++..+.+ .+.++++...+.....+ .+..+.....+|+.+.+++|+. .++..
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 278 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREEL-EELARELGLADRVIFTGFVPREELPDYYKA 278 (374)
T ss_pred CCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHH-HHHHHHcCCCCcEEEeccCChHHHHHHHHH
Confidence 34567777887652 233333333333333 34555554433221111 1222222256899999999976 67889
Q ss_pred ccccceecc----CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 351 EATGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 351 ~~~~~vI~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+++ +|.. |...++.||+++|+|+|+.. ....+..+++. +.|..++..+. ++.+++.++++++
T Consensus 279 ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~~~~-~~~~~i~~l~~~~ 344 (374)
T cd03817 279 ADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPPGDE-ALAEALLRLLQDP 344 (374)
T ss_pred cCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCCCCH-HHHHHHHHHHhCh
Confidence 999 7733 33478999999999999865 44567777887 78888873333 8999999999886
No 59
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.33 E-value=2.9e-09 Score=103.01 Aligned_cols=134 Identities=21% Similarity=0.257 Sum_probs=88.0
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhh
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVL 348 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll 348 (464)
.++.+++.+|+.. ..+....+++++..+ +.++++...+.....+ ....+....++++.+.+++++. .++
T Consensus 197 ~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 273 (374)
T cd03801 197 EDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREEL-EALAAELGLGDRVTFLGFVPDEDLPALY 273 (374)
T ss_pred CCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHH-HHHHHHhCCCcceEEEeccChhhHHHHH
Confidence 3446778888765 223333444444332 2444444322211111 1111112256899999999754 789
Q ss_pred ccccccceec----cCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 349 AHEATGCFVT----HCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 349 ~~~~~~~vI~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
..+++ +|. -|..+++.||+++|+|+|+.+. ......+++. +.|...+..+.+++.+++.+++.|+
T Consensus 274 ~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 274 AAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred HhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCCCCHHHHHHHHHHHHcCh
Confidence 99999 773 3456789999999999998664 5567777777 8888888667999999999999886
No 60
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.32 E-value=7.5e-09 Score=103.49 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=85.8
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEEcCccc-CcCCh----------hhhhhccCCCcEEEEecc
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQ-AKLPK----------KFSDETLTSHKSLVVSWC 342 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~-~~~~~----------~~~~~~~~~~nv~~~~~~ 342 (464)
..++++.|.+. +.+-+..+++|++.+ ...++++.|+... ..+.. ++.+++...++|.+.+++
T Consensus 248 ~~~i~~vGrl~--~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~ 325 (439)
T TIGR02472 248 KPPILAISRPD--RRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHH 325 (439)
T ss_pred CcEEEEEcCCc--ccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCC
Confidence 35777778775 334455555555431 2344444454321 11111 112333356889999988
Q ss_pred ChH---Hhhccc----cccceeccC---C-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHH
Q 012412 343 PQL---EVLAHE----ATGCFVTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIAD 411 (464)
Q Consensus 343 p~~---~ll~~~----~~~~vI~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~ 411 (464)
++. .++..+ |+ ||... | ..++.||+++|+|+|+... ......+++. ..|..++.-++++|++
T Consensus 326 ~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv~~~d~~~la~ 398 (439)
T TIGR02472 326 RPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLVDVLDLEAIAS 398 (439)
T ss_pred CHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEeCCCCHHHHHH
Confidence 866 446655 67 77543 4 3589999999999997653 4466666666 6788887678999999
Q ss_pred HHHHHhcCC
Q 012412 412 CISEILEGE 420 (464)
Q Consensus 412 ~i~~ll~~~ 420 (464)
+|.++++|+
T Consensus 399 ~i~~ll~~~ 407 (439)
T TIGR02472 399 ALEDALSDS 407 (439)
T ss_pred HHHHHHhCH
Confidence 999999986
No 61
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.31 E-value=3.9e-09 Score=104.06 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=62.6
Q ss_pred CCCcEEEEeccChH---Hhhccccccceecc---CC-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCc
Q 012412 332 TSHKSLVVSWCPQL---EVLAHEATGCFVTH---CG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIV 404 (464)
Q Consensus 332 ~~~nv~~~~~~p~~---~ll~~~~~~~vI~H---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~ 404 (464)
..+||.+.+++|.. .++..+++ ++.. -| ..++.||+++|+|+|+.-. ......+.+. +.|...+.
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~~- 349 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCEP- 349 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeCC-
Confidence 56899999999976 67889998 6632 22 3578999999999998643 3344556666 67877664
Q ss_pred CHHHHHHHHHHHhcCC
Q 012412 405 KRDAIADCISEILEGE 420 (464)
Q Consensus 405 ~~~~l~~~i~~ll~~~ 420 (464)
+.++++++|.++++++
T Consensus 350 ~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 350 TPEEFAEAMLKLANDP 365 (392)
T ss_pred CHHHHHHHHHHHHhCh
Confidence 7999999999999986
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.28 E-value=1.9e-09 Score=107.49 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=63.5
Q ss_pred cEEEEeccChH-Hhhccccccceecc-----CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHH
Q 012412 335 KSLVVSWCPQL-EVLAHEATGCFVTH-----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDA 408 (464)
Q Consensus 335 nv~~~~~~p~~-~ll~~~~~~~vI~H-----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~ 408 (464)
++.+.+..... .+++.+|+ ++.. +|..++.||+++|+|+|+-|...++......+.+. |+++.. -+.++
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~--~d~~~ 377 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV--EDAED 377 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE--CCHHH
Confidence 45566655444 88899998 5432 34446899999999999999888888888888788 877664 47899
Q ss_pred HHHHHHHHhcCC
Q 012412 409 IADCISEILEGE 420 (464)
Q Consensus 409 l~~~i~~ll~~~ 420 (464)
|.+++.++++|+
T Consensus 378 La~~l~~ll~~~ 389 (425)
T PRK05749 378 LAKAVTYLLTDP 389 (425)
T ss_pred HHHHHHHHhcCH
Confidence 999999999986
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.27 E-value=6.1e-09 Score=100.02 Aligned_cols=135 Identities=19% Similarity=0.251 Sum_probs=82.8
Q ss_pred CceEEEEeccccc-CCHHHHHHHHHHHhh--CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhccccc
Q 012412 278 ESVVYVSYGSFVE-LKAEEMEELAWGLKS--SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEAT 353 (464)
Q Consensus 278 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~~ 353 (464)
+..+++.+|+... -..+.+-.++..+.+ .+.++++...+.....+ .+..+.....+++.+.++.... .++..+++
T Consensus 177 ~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 255 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREAL-EALIKELGLEDRVILLGFTKNIEEYYAKASI 255 (348)
T ss_pred CCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHH-HHHHHHcCCCCeEEEcCCcchHHHHHHhCCE
Confidence 3456777777653 233333333444432 23455444322211111 1122222256788888884433 89999999
Q ss_pred cceeccCC----hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhc-ceeeccCcCHHHHHHHHHHHhcCC
Q 012412 354 GCFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWK-TGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 354 ~~vI~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G-~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+|.-.. ..++.||+++|+|+|+.+....+ ..+... | .|...+..+.+++.+++.+++.|+
T Consensus 256 --~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 256 --FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPNGDVEALAEALLRLMEDE 320 (348)
T ss_pred --EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCCCCHHHHHHHHHHHHcCH
Confidence 775542 46899999999999986644332 234444 5 788777678899999999999987
No 64
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.25 E-value=2.5e-08 Score=97.06 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=63.6
Q ss_pred CCCcEEEEeccC-hH---HhhccccccceeccC----ChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccC
Q 012412 332 TSHKSLVVSWCP-QL---EVLAHEATGCFVTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPI 403 (464)
Q Consensus 332 ~~~nv~~~~~~p-~~---~ll~~~~~~~vI~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~ 403 (464)
...++.+.+|++ +. .++..+++ +|.-. ...++.||+++|+|+|+... ......+.+. +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC
Confidence 457889999998 43 67999999 87643 35789999999999997653 3344455555 67777776
Q ss_pred cCHHHHHHHHHHHhcCC
Q 012412 404 VKRDAIADCISEILEGE 420 (464)
Q Consensus 404 ~~~~~l~~~i~~ll~~~ 420 (464)
.+.+++.+++.++++|+
T Consensus 315 ~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 315 GDPEDLAEGIEWLLADP 331 (365)
T ss_pred CCHHHHHHHHHHHHhCH
Confidence 68999999999999886
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.24 E-value=1.3e-08 Score=98.67 Aligned_cols=135 Identities=17% Similarity=0.171 Sum_probs=88.5
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhCC-CeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhccccc
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLKSSD-QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEAT 353 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~ 353 (464)
++.+++..|+.. ..+-...++++++++. .++++...+.....+. ++.++....+||.+.+|+|+. .++..+++
T Consensus 190 ~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~-~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~ 266 (357)
T cd03795 190 GRPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGPLEAELE-ALAAALGLLDRVRFLGRLDDEEKAALLAACDV 266 (357)
T ss_pred CCcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCChhHHHHH-HHHHhcCCcceEEEcCCCCHHHHHHHHHhCCE
Confidence 446778888875 3344555667776665 5555554332211111 111122256899999999975 68888999
Q ss_pred cceec---cCCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHh-HhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 354 GCFVT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILD-VWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 354 ~~vI~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~-~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
.++.+ +.|+ .++.||+++|+|+|+....... ..+.. . +.|...+..+.+++.++|.++++|+
T Consensus 267 ~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 267 FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred EEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCCCCHHHHHHHHHHHHHCH
Confidence 33323 2344 4789999999999986544433 34443 6 7788777668999999999999986
No 66
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.23 E-value=1.8e-08 Score=99.61 Aligned_cols=134 Identities=12% Similarity=0.108 Sum_probs=79.8
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHh-h-CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhcc
Q 012412 277 KESVVYVSYGSFVE-LKAEEMEELAWGLK-S-SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAH 350 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~-~~~~~~~~~~~al~-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~ 350 (464)
++..+++..|.... -..+.+-..+..+. + .+.+++++..+.....+ .+..++....++|.+.+|+|+. .+++.
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l-~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ 269 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILL-EEMREKYNLQDRVELLGAVPHERVRDVLVQ 269 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHH-HHHHHHhCCCCeEEEeCCCCHHHHHHHHHh
Confidence 34568888887752 22333333333333 2 23454444333211111 2222333356789999999865 78889
Q ss_pred ccccceec---cCChh-HHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 351 EATGCFVT---HCGWN-STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 351 ~~~~~vI~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+|+ +|. +-|+| ++.||+++|+|+|+.+..+ ....+.+ |.+.. ...+.+++.+++.+++++.
T Consensus 270 ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~-~~~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 270 GHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILL-AEPDVESIVRKLEEAISIL 334 (398)
T ss_pred CCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--Cceee-cCCCHHHHHHHHHHHHhCh
Confidence 999 663 22443 8999999999999876542 3334433 33322 2237899999999999864
No 67
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.21 E-value=6e-08 Score=100.59 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=79.4
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEEcCccc--CcCCh---------hhhhhccCCCcEEEEecc-
Q 012412 280 VVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQ--AKLPK---------KFSDETLTSHKSLVVSWC- 342 (464)
Q Consensus 280 ~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~--~~~~~---------~~~~~~~~~~nv~~~~~~- 342 (464)
.++++.|... +.+-+..+++++.+. +.+++++.++... ....+ ++.+++.+.++|.+.++.
T Consensus 551 piIl~VGRL~--~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~ 628 (784)
T TIGR02470 551 PIIFSMARLD--RVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQL 628 (784)
T ss_pred cEEEEEeCCC--ccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcC
Confidence 4667777765 334455566665432 2455544433210 00111 122333356889988875
Q ss_pred Ch---HHhhc----cccccceec---cCCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHH
Q 012412 343 PQ---LEVLA----HEATGCFVT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIAD 411 (464)
Q Consensus 343 p~---~~ll~----~~~~~~vI~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~ 411 (464)
+. .+++. .+++ ||. .=|+ -++.||+++|+|+|+.. ....+..+++. ..|..++..+++++++
T Consensus 629 ~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~----~GG~~EiV~dg-~tGfLVdp~D~eaLA~ 701 (784)
T TIGR02470 629 NRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATR----FGGPLEIIQDG-VSGFHIDPYHGEEAAE 701 (784)
T ss_pred CcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEEeCCCCHHHHHH
Confidence 32 24443 2346 663 3344 48899999999999754 45677778777 8899998668899999
Q ss_pred HHHHHh
Q 012412 412 CISEIL 417 (464)
Q Consensus 412 ~i~~ll 417 (464)
+|.+++
T Consensus 702 aL~~ll 707 (784)
T TIGR02470 702 KIVDFF 707 (784)
T ss_pred HHHHHH
Confidence 999876
No 68
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.20 E-value=1.9e-08 Score=98.11 Aligned_cols=82 Identities=22% Similarity=0.224 Sum_probs=66.7
Q ss_pred CCCcEEEEeccChH---Hhhccccccceecc----------CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcce
Q 012412 332 TSHKSLVVSWCPQL---EVLAHEATGCFVTH----------CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTG 398 (464)
Q Consensus 332 ~~~nv~~~~~~p~~---~ll~~~~~~~vI~H----------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g 398 (464)
..+++.+.+++|+. .++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-Cee
Confidence 46889999999875 66889999 6632 2357899999999999987653 467777777 888
Q ss_pred eeccCcCHHHHHHHHHHHhcCC
Q 012412 399 LKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 399 ~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
..++..+.+++.++|.++++|+
T Consensus 316 ~~~~~~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 316 LLVPEGDVAALAAALGRLLADP 337 (367)
T ss_pred EEECCCCHHHHHHHHHHHHcCH
Confidence 8887678899999999999986
No 69
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.19 E-value=7.9e-08 Score=93.19 Aligned_cols=137 Identities=19% Similarity=0.178 Sum_probs=87.1
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhhCCCeEEEEEcCcc-cCcCChhhhhhccCCCcEEEEeccChH---Hhhccc
Q 012412 277 KESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESE-QAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHE 351 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~ 351 (464)
.++.+++..|+... -..+.+-..+..+.+.+..+.+.+.+.. ....-.+..+.....+|+.+.+++++. .++..+
T Consensus 200 ~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 200 EDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 34567788888653 2233333333333332223333332321 111111111112246899999999875 778899
Q ss_pred ccccee----ccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 352 ATGCFV----THCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 352 ~~~~vI----~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
++ +| +-|..+++.||+++|+|+|+.+. ......+++. +.|...+..+.+++.+++.++++++
T Consensus 280 d~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 280 DV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred Ce--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECCCCHHHHHHHHHHHhcCc
Confidence 99 66 22456789999999999997653 4456667777 7788877778999999999999987
No 70
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.18 E-value=7.3e-08 Score=93.59 Aligned_cols=131 Identities=17% Similarity=0.135 Sum_probs=79.0
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhh-----CCCeEEEEEcCcccCcCChhhh---hhccCCCcEEEEeccChH---
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKS-----SDQHFLWVVRESEQAKLPKKFS---DETLTSHKSLVVSWCPQL--- 345 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~nv~~~~~~p~~--- 345 (464)
.++.+++..|+... .+....++++++. .+.+++++ |... ......+. ......+++.+.+|+++.
T Consensus 201 ~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~l~i~-G~~~-~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 276 (375)
T cd03821 201 PDKRIILFLGRLHP--KKGLDLLIEAFAKLAERFPDWHLVIA-GPDE-GGYRAELKQIAAALGLEDRVTFTGMLYGEDKA 276 (375)
T ss_pred CCCcEEEEEeCcch--hcCHHHHHHHHHHhhhhcCCeEEEEE-CCCC-cchHHHHHHHHHhcCccceEEEcCCCChHHHH
Confidence 34567788888752 2233334444433 23444433 3221 11111111 222256899999999955
Q ss_pred Hhhccccccceecc---CC-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 346 EVLAHEATGCFVTH---CG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 346 ~ll~~~~~~~vI~H---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
.++..+++ +|.- .| ..++.||+++|+|+|+.+.. .....+. . +.|...+ .+.+++.++|.++++++
T Consensus 277 ~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~-~-~~~~~~~-~~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 277 AALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIE-Y-GCGWVVD-DDVDALAAALRRALELP 346 (375)
T ss_pred HHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhh-c-CceEEeC-CChHHHHHHHHHHHhCH
Confidence 66889998 6532 23 46789999999999986633 3333332 3 5566655 34499999999999986
No 71
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.17 E-value=1.2e-08 Score=99.49 Aligned_cols=149 Identities=16% Similarity=0.206 Sum_probs=92.7
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhC--CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccCh--H---Hhhccc
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQ--L---EVLAHE 351 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~--~---~ll~~~ 351 (464)
+.+++..|.......+.+..+++++... +.+++++-.+...+.+ .+..+.+..+++|.+.+|+++ . +.+..+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~ 258 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNV 258 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHHHhcC
Confidence 4567788876532334455666666654 3455544433222222 222233235689999999854 2 456678
Q ss_pred cccceec--c--CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCc---hHH
Q 012412 352 ATGCFVT--H--CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGER---GKE 424 (464)
Q Consensus 352 ~~~~vI~--H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~---~~~ 424 (464)
++ +|. + |-..++.||+++|+|+|+.-. .......+++. ..|..++..+.+++.++|.++++|++ ...
T Consensus 259 d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~ 332 (359)
T PRK09922 259 SA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYTPGNIDEFVGKLNKVISGEVKYQHDA 332 (359)
T ss_pred cE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEECCCCHHHHHHHHHHHHhCcccCCHHH
Confidence 88 664 3 235789999999999997641 22233456666 67887776799999999999999874 133
Q ss_pred HHHHHHHHHH
Q 012412 425 LRRNAGKWRK 434 (464)
Q Consensus 425 ~~~~a~~l~~ 434 (464)
.+++++++..
T Consensus 333 ~~~~~~~~~~ 342 (359)
T PRK09922 333 IPNSIERFYE 342 (359)
T ss_pred HHHHHHHhhH
Confidence 4444444443
No 72
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.16 E-value=3.4e-09 Score=103.49 Aligned_cols=138 Identities=13% Similarity=0.202 Sum_probs=87.7
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhc
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLA 349 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~ 349 (464)
++.|+++.+-.... .+.+..++++++++ +.++++..++.. ...+.+.+.....+|+++.+.+++. .++.
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 273 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP--VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAA 273 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh--HHHHHHHHHhCCCCCEEEECCCChHHHHHHHH
Confidence 34666655432211 14466677766553 456666544321 1112222222245789999877654 6778
Q ss_pred cccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCchHHHHHHH
Q 012412 350 HEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNA 429 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~~~~~~~~a 429 (464)
.+++ +|+..|.. +.||+++|+|+|.++...++.. +.+. |.+..+. .++++|.+++.++++|+ +.+++.
T Consensus 274 ~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~-~d~~~i~~ai~~ll~~~---~~~~~~ 341 (365)
T TIGR00236 274 NSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG-TDKENITKAAKRLLTDP---DEYKKM 341 (365)
T ss_pred hCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC-CCHHHHHHHHHHHHhCh---HHHHHh
Confidence 9998 99877654 6999999999999875554442 3346 7666553 57999999999999886 555544
Q ss_pred H
Q 012412 430 G 430 (464)
Q Consensus 430 ~ 430 (464)
.
T Consensus 342 ~ 342 (365)
T TIGR00236 342 S 342 (365)
T ss_pred h
Confidence 3
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.15 E-value=1.9e-07 Score=90.66 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=63.3
Q ss_pred CCCcEEEEe-ccChH---Hhhccccccceec--c----CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeec
Q 012412 332 TSHKSLVVS-WCPQL---EVLAHEATGCFVT--H----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKF 401 (464)
Q Consensus 332 ~~~nv~~~~-~~p~~---~ll~~~~~~~vI~--H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l 401 (464)
..+||.+.+ |+|+. .++..+++ +|. . |..+++.||+++|+|+|+.+..+ ...+... +.|...
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEE
Confidence 568998885 58864 78899999 662 2 33568999999999999877543 3445666 778877
Q ss_pred cCcCHHHHHHHHHHHhcCC
Q 012412 402 PIVKRDAIADCISEILEGE 420 (464)
Q Consensus 402 ~~~~~~~l~~~i~~ll~~~ 420 (464)
+..+.+++.+++.++++|+
T Consensus 317 ~~~d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 317 PPGDPAALAEAIRRLLADP 335 (366)
T ss_pred cCCCHHHHHHHHHHHHcCh
Confidence 7667999999999999985
No 74
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.15 E-value=2.7e-08 Score=93.92 Aligned_cols=298 Identities=17% Similarity=0.168 Sum_probs=161.4
Q ss_pred cEEEE-EcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc--cccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHH
Q 012412 14 AHCLV-LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY--KSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (464)
Q Consensus 14 ~~il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (464)
|||.| +..+. |+.-+..+.++|.++||+|.+.+.+... +.+. ..|+.+..++..- .+....+.
T Consensus 1 MkIwiDi~~p~--hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~----~yg~~y~~iG~~g--------~~~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDITHPA--HVHFFKNIIRELEKRGHEVLITARDKDETEELLD----LYGIDYIVIGKHG--------DSLYGKLL 66 (335)
T ss_pred CeEEEECCCch--HHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH----HcCCCeEEEcCCC--------CCHHHHHH
Confidence 57876 44444 9999999999999999999999976432 2333 6788888887432 12222222
Q ss_pred HHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeC
Q 012412 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILL 170 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (464)
..... ...+.+.+.+ .+| |++|+- ....+..+|..+|+|+|.+.-+.-+.. . ..
T Consensus 67 ~~~~R----~~~l~~~~~~-~~p-Dv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~---~----~~------------ 120 (335)
T PF04007_consen 67 ESIER----QYKLLKLIKK-FKP-DVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIA---Q----NR------------ 120 (335)
T ss_pred HHHHH----HHHHHHHHHh-hCC-CEEEec-CcHHHHHHHHHhCCCeEEEecCchhhc---c----ce------------
Confidence 22221 2222232222 255 999986 556688899999999999866541111 0 00
Q ss_pred CCCCCCCCCCCCCccccCCCCchHH-HHHHHHHhhhccCCcEEE-ecchhhhhHHHHHHHHhcCCeeeecccCCCccccc
Q 012412 171 PGMPPLEPQDMPSFIHDLGSYPAVS-YMMMKFQFENIDKADWVL-CNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDK 248 (464)
Q Consensus 171 p~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~ 248 (464)
..+|... . -..+... .... ..+. .+ +.+. .+.+.|+ .++-|.
T Consensus 121 Lt~Pla~------~----i~~P~~~~~~~~-~~~G--~~-~~i~~y~G~~E~--------------ayl~~F-------- 164 (335)
T PF04007_consen 121 LTLPLAD------V----IITPEAIPKEFL-KRFG--AK-NQIRTYNGYKEL--------------AYLHPF-------- 164 (335)
T ss_pred eehhcCC------e----eECCcccCHHHH-HhcC--Cc-CCEEEECCeeeE--------------EeecCC--------
Confidence 0000000 0 0001000 1111 1111 11 1222 3333222 222222
Q ss_pred cccCcccccccccccchhHHHHHhhcCCCCceEEEEecccc----cCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCCh
Q 012412 249 QIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFV----ELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPK 324 (464)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 324 (464)
.|+ ++..+-++. .+++.|++=+-+.. ......+..+++.+++.+.. |+.++... ...+
T Consensus 165 -------------~Pd-~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~~--~~~~ 226 (335)
T PF04007_consen 165 -------------KPD-PEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRYE--DQRE 226 (335)
T ss_pred -------------CCC-hhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCCc--chhh
Confidence 222 444444443 24567777665533 22446677888899888877 44443321 1111
Q ss_pred hhhhhccCCCcEEEE-eccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccC
Q 012412 325 KFSDETLTSHKSLVV-SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPI 403 (464)
Q Consensus 325 ~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~ 403 (464)
.+.+ -++.+. .-+...+||..+++ +|+-|| ....||...|+|.+.+ ..++-...-+.+.+. |. ....
T Consensus 227 ~~~~-----~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~~ 294 (335)
T PF04007_consen 227 LFEK-----YGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYHS 294 (335)
T ss_pred HHhc-----cCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEec
Confidence 1111 123333 45566689999999 998777 6779999999999973 122322344557777 65 3334
Q ss_pred cCHHHHHHHHHHHh
Q 012412 404 VKRDAIADCISEIL 417 (464)
Q Consensus 404 ~~~~~l~~~i~~ll 417 (464)
-+.+++.+.+.+.+
T Consensus 295 ~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 295 TDPDEIVEYVRKNL 308 (335)
T ss_pred CCHHHHHHHHHHhh
Confidence 57777777665544
No 75
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.14 E-value=1.3e-08 Score=97.80 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=84.9
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhcc
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAH 350 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~ 350 (464)
.++.+++..|+.. ..+....++++++.+ +.++++...+.....+ .+..+.....+++.+.++.+.. .++..
T Consensus 187 ~~~~~i~~~g~~~--~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 187 PDGPVILAVGRLS--PQKGFDTLIRAFALLRKEGPDARLVILGDGPLREEL-EALAKELGLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred CCceEEEEEecch--hhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHH-HHHHHhcCCCccEEEecccCCHHHHHHh
Confidence 4457888888876 223333444444332 3455544332211111 1222332256789999998765 89999
Q ss_pred ccccceecc----CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHH---HHHHHHHhcCC
Q 012412 351 EATGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAI---ADCISEILEGE 420 (464)
Q Consensus 351 ~~~~~vI~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l---~~~i~~ll~~~ 420 (464)
+++ +|.- |..+++.||+++|+|+|+... ......+++. +.|...+..+.+.+ .+++..++.++
T Consensus 264 ~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 264 ADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDG-ENGLLVPVGDEAALAAAALALLDLLLDP 333 (353)
T ss_pred CCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCC-CceEEECCCCHHHHHHHHHHHHhccCCh
Confidence 999 6632 335688999999999997543 3667778888 88998886678888 55555666665
No 76
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.14 E-value=1.3e-07 Score=91.84 Aligned_cols=135 Identities=21% Similarity=0.233 Sum_probs=84.8
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhhC--CCeEEEEEcCcccCcCChhh---hhhccCCCcEEEEeccChH-Hhhc
Q 012412 277 KESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKF---SDETLTSHKSLVVSWCPQL-EVLA 349 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~---~~~~~~~~nv~~~~~~p~~-~ll~ 349 (464)
++..+++..|++.. -..+.+-..+..+.+. +.+++++-.+.......+.+ .......++|.+.+|.+.. .++.
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~ 262 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA 262 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH
Confidence 34567788888652 2345555555555542 34544444332221221111 1111245789999996544 8899
Q ss_pred cccccceecc----CC-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhc
Q 012412 350 HEATGCFVTH----CG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 418 (464)
Q Consensus 350 ~~~~~~vI~H----gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~ 418 (464)
.+++ +|+- -| .+++.||+++|+|+|+.. -......+.+. +.|..++..+.+.+.++|..++.
T Consensus 263 ~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 263 LADI--VVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRPG-ETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred hCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhCC-CceEEeCCCCHHHHHHHHHHHHh
Confidence 9999 5532 23 358999999999999754 33456667666 78888876789999999976664
No 77
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.11 E-value=1.8e-07 Score=91.59 Aligned_cols=136 Identities=16% Similarity=0.162 Sum_probs=86.6
Q ss_pred CCceEEEEeccccc--CCHHHHHHHHHHHhhC-----CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhh
Q 012412 277 KESVVYVSYGSFVE--LKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVL 348 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~--~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll 348 (464)
.++.++++.|.... ....+++.+...+++. +.+++++-.+...+.+ ....+.....+++++.++..+. .++
T Consensus 192 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~ 270 (374)
T TIGR03088 192 DESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGAC-EQMVRAAGLAHLVWLPGERDDVPALM 270 (374)
T ss_pred CCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHH-HHHHHHcCCcceEEEcCCcCCHHHHH
Confidence 34578888888762 2233333333333332 3355544333221222 1222222245678887766544 899
Q ss_pred cccccccee--cc--CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 349 AHEATGCFV--TH--CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 349 ~~~~~~~vI--~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
..+|+ +| ++ |-..++.||+++|+|+|+... ..+...+++. ..|..++.-+.+++.++|.++++++
T Consensus 271 ~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 271 QALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPPGDAVALARALQPYVSDP 339 (374)
T ss_pred HhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCCCCHHHHHHHHHHHHhCH
Confidence 99999 77 33 335689999999999998664 3466667666 6788877678999999999999885
No 78
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.09 E-value=9.1e-08 Score=92.75 Aligned_cols=136 Identities=24% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhhC--CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhcc
Q 012412 277 KESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAH 350 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~ 350 (464)
.++.+++.+|+... -..+.+-..+..+.+. +.++++...+.....+ ..+.+....++||.+.+++|+. .++..
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ 255 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDEL-EALIAELGLEDRVTLLGAKSQEEVRELLRA 255 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHH-HHHHHHcCCCCeEEECCcCChHHHHHHHHh
Confidence 34567777887652 2334443444444332 3445444333221111 1122222256899999999855 77888
Q ss_pred ccccceec----------cCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 351 EATGCFVT----------HCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 351 ~~~~~vI~----------HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+++ +|. -|..+++.||+++|+|+|+.+.. .....+++. ..|...+.-+.+++.++|.++++++
T Consensus 256 adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~~~~~~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 256 ADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGLLVPPGDPEALADAIERLLDDP 328 (355)
T ss_pred CCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceEEeCCCCHHHHHHHHHHHHhCH
Confidence 999 665 23357899999999999986542 233455555 5888887668999999999999886
No 79
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.08 E-value=2.5e-09 Score=104.35 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=89.4
Q ss_pred CCceEEEEecccccC-CHHHHHHHHHHHhhCCC-eEEEEEcCccc--CcCChhhhhhccC-CCcEEEEeccChH---Hhh
Q 012412 277 KESVVYVSYGSFVEL-KAEEMEELAWGLKSSDQ-HFLWVVRESEQ--AKLPKKFSDETLT-SHKSLVVSWCPQL---EVL 348 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~--~~~~~~~~~~~~~-~~nv~~~~~~p~~---~ll 348 (464)
+++.|++++|..... ..+.+..++++++++.. +++++.++... ..+.+.. ..... .+|+.+.++.++. .++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~ 275 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAG-LEFLGHHPNVLLISPLGYLYFLLLL 275 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHH-HhhccCCCCEEEECCcCHHHHHHHH
Confidence 456788888876532 46777888888876543 24444433211 2222211 11112 4788888766544 678
Q ss_pred ccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 349 AHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 349 ~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
..+|+ ||+..| |.+.||+++|+|+|+++.. |. +..+.+. |++..+. -+.++|.+++.++++++
T Consensus 276 ~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~-~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 276 KNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG-TDPEAILAAIEKLLSDE 338 (363)
T ss_pred HcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC-CCHHHHHHHHHHHhcCc
Confidence 88999 999998 7888999999999998733 22 3345567 7666554 25899999999999985
No 80
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.07 E-value=3.8e-08 Score=94.67 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=84.6
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhccccccce
Q 012412 280 VVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGCF 356 (464)
Q Consensus 280 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~~v 356 (464)
.+.+..|... +.+-...+++++++.+.++++.-.+.....+.....+.....+++.+.+++++. .+++.+++ +
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~--~ 247 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARA--L 247 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcE--E
Confidence 3556677774 334455677778888888776654432222211111110025899999999976 56888998 5
Q ss_pred e--c--cCCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 357 V--T--HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 357 I--~--HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
+ + +-|+ .++.||+++|+|+|+... ..+...+++. ..|...+. .+++.+++.+++..
T Consensus 248 v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~~--~~~l~~~l~~l~~~ 308 (335)
T cd03802 248 LFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVDS--VEELAAAVARADRL 308 (335)
T ss_pred EeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeCC--HHHHHHHHHHHhcc
Confidence 5 3 2344 579999999999997654 3444555554 56777754 99999999998765
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.07 E-value=1.3e-07 Score=91.76 Aligned_cols=132 Identities=20% Similarity=0.203 Sum_probs=81.8
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhh-----CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhcc
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKS-----SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAH 350 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~ 350 (464)
++..+++..|+.. +.+-...+++++++ .+.+++++-.+...+.+. ...+.+...+|+.+.++..+. .++..
T Consensus 186 ~~~~~~l~~g~~~--~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~ 262 (360)
T cd04951 186 NDTFVILAVGRLV--EAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLE-RLIKALGLSNRVKLLGLRDDIAAYYNA 262 (360)
T ss_pred CCCEEEEEEeeCc--hhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHH-HHHHhcCCCCcEEEecccccHHHHHHh
Confidence 3456788888765 22333333333332 245666554332221111 111222245789999987654 88999
Q ss_pred ccccceeccC----ChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 351 EATGCFVTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 351 ~~~~~vI~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+++ +|.-. ..+++.||+++|+|+|+. |...+...+++. |.... ..+.+++.+++.++++++
T Consensus 263 ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~~~--~~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 263 ADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLIVP--ISDPEALANKIDEILKMS 327 (360)
T ss_pred hce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceEeC--CCCHHHHHHHHHHHHhCC
Confidence 999 66432 257889999999999974 455566666666 55443 468999999999999543
No 82
>PLN00142 sucrose synthase
Probab=99.07 E-value=1.8e-07 Score=97.07 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=78.7
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhC-----CCeEEEEEcCccc--CcCCh---------hhhhhccCCCcEEEEec-
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQ--AKLPK---------KFSDETLTSHKSLVVSW- 341 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~--~~~~~---------~~~~~~~~~~nv~~~~~- 341 (464)
..++++.|... +.+-+..+++++++. +.+++++.++... ....+ ++.+++.+.++|.+.+.
T Consensus 573 kpvIl~VGRL~--~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~ 650 (815)
T PLN00142 573 KPIIFSMARLD--RVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQ 650 (815)
T ss_pred CcEEEEEecCc--ccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCc
Confidence 34677788775 233344455555432 3455554443110 00111 12233335678887653
Q ss_pred ---cChHHhhc----cccccceec---cCChh-HHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHH
Q 012412 342 ---CPQLEVLA----HEATGCFVT---HCGWN-STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIA 410 (464)
Q Consensus 342 ---~p~~~ll~----~~~~~~vI~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~ 410 (464)
.+..+++. .+++ ||. +-|+| ++.||+++|+|+|+.. .......+++. ..|..++..++++++
T Consensus 651 ~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATd----vGG~~EIV~dG-~tG~LV~P~D~eaLA 723 (815)
T PLN00142 651 TNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATC----QGGPAEIIVDG-VSGFHIDPYHGDEAA 723 (815)
T ss_pred CCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEEeCCCCHHHHH
Confidence 33344543 3466 764 34554 8899999999999754 44566777777 789888866788888
Q ss_pred HHHHHH----hcCC
Q 012412 411 DCISEI----LEGE 420 (464)
Q Consensus 411 ~~i~~l----l~~~ 420 (464)
++|.++ +.|+
T Consensus 724 ~aI~~lLekLl~Dp 737 (815)
T PLN00142 724 NKIADFFEKCKEDP 737 (815)
T ss_pred HHHHHHHHHhcCCH
Confidence 888765 4565
No 83
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.04 E-value=7.2e-07 Score=87.81 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=84.2
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhC--CCeEEEEEcCcccCcCChhhhhhcc---C-CCcEEEE-eccChH---Hh
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETL---T-SHKSLVV-SWCPQL---EV 347 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~---~-~~nv~~~-~~~p~~---~l 347 (464)
+.++++..|... +.+-+..++++++.+ +.+++++.++.....+.+.+.+... . .+++.+. +++++. .+
T Consensus 200 ~~~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 277 (388)
T TIGR02149 200 SRPYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVEL 277 (388)
T ss_pred CceEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHH
Confidence 345677778765 234455555666554 4566655544322222222222110 1 2346544 678754 77
Q ss_pred hccccccceecc---CC-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCH------HHHHHHHHHHh
Q 012412 348 LAHEATGCFVTH---CG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKR------DAIADCISEIL 417 (464)
Q Consensus 348 l~~~~~~~vI~H---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~------~~l~~~i~~ll 417 (464)
+..+|+ +|.- -| ..++.||+++|+|+|+.. .......+++. +.|..++.-+. +++.++|.+++
T Consensus 278 ~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~----~~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~l~ 350 (388)
T TIGR02149 278 LSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASA----TGGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINILL 350 (388)
T ss_pred HHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeC----CCCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHHHH
Confidence 899999 7742 23 356799999999999865 34566777777 78888873344 89999999999
Q ss_pred cCC
Q 012412 418 EGE 420 (464)
Q Consensus 418 ~~~ 420 (464)
+|+
T Consensus 351 ~~~ 353 (388)
T TIGR02149 351 ADP 353 (388)
T ss_pred hCH
Confidence 886
No 84
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.04 E-value=2.2e-08 Score=95.28 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=90.9
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhhCCCe-EEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccce
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLKSSDQH-FLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCF 356 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~v 356 (464)
+++|.+--||-..--...+..++++.+.+..+ .++.+...... +.+.+.......+.+.+ .-.+++..||+ +
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~---~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--a 239 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKG---KDLKEIYGDISEFEISY--DTHKALLEAEF--A 239 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcH---HHHHHHHhcCCCcEEec--cHHHHHHhhhH--H
Confidence 36899999997643234445444555443221 23333332111 22222211112333332 33489999999 9
Q ss_pred eccCChhHHHHHHHhCCcEec-cCCccchhhHHHHHH---hHhcceeec--------------c-CcCHHHHHHHHHHHh
Q 012412 357 VTHCGWNSTMEALSLGVPMVA-MPQWSDQSTNAKYIL---DVWKTGLKF--------------P-IVKRDAIADCISEIL 417 (464)
Q Consensus 357 I~HgG~~s~~eal~~GvP~v~-~P~~~DQ~~na~rl~---~~~G~g~~l--------------~-~~~~~~l~~~i~~ll 417 (464)
|+-.|..|+ |++.+|+|+|+ .....-|+.||+++. .. |+.-.+ . +++++.|.+.+.+ +
T Consensus 240 l~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~-~ 316 (347)
T PRK14089 240 FICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE-M 316 (347)
T ss_pred HhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH-H
Confidence 999999999 99999999998 334557999999999 55 655444 2 7899999999987 2
Q ss_pred cCCchHHHHHHHHHHHHHH
Q 012412 418 EGERGKELRRNAGKWRKLA 436 (464)
Q Consensus 418 ~~~~~~~~~~~a~~l~~~~ 436 (464)
.. +.+++...++.+.+
T Consensus 317 ~~---~~~~~~~~~l~~~l 332 (347)
T PRK14089 317 DR---EKFFKKSKELREYL 332 (347)
T ss_pred HH---HHHHHHHHHHHHHh
Confidence 22 25666666665555
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.02 E-value=3.2e-07 Score=89.23 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=75.2
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCC--CeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhccccccc
Q 012412 281 VYVSYGSFVELKAEEMEELAWGLKSSD--QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGC 355 (464)
Q Consensus 281 v~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~~ 355 (464)
.++..|+.. +.+-+..++++++++. .+++++..+.....+.+.+.+.....++|.+.+++|+. +++..+++
T Consensus 195 ~i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~-- 270 (363)
T cd04955 195 YYLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL-- 270 (363)
T ss_pred EEEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE--
Confidence 345678876 2334445566665543 55554443322222222222222256899999999986 56777888
Q ss_pred eeccC----Ch-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 356 FVTHC----GW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 356 vI~Hg----G~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
++.+. |+ .++.||+++|+|+|+..... +...++.. |.. .+. .+.+++++.++++|+
T Consensus 271 ~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~~--~~~--~~~l~~~i~~l~~~~ 331 (363)
T cd04955 271 FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AIY--FKV--GDDLASLLEELEADP 331 (363)
T ss_pred EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-eeE--ecC--chHHHHHHHHHHhCH
Confidence 55433 33 57899999999999865432 22222233 333 221 122999999999885
No 86
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.01 E-value=2.1e-07 Score=90.43 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=82.6
Q ss_pred CCceEEEEeccccc-CCHHHHHHHHHHHhhC--CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhcccc
Q 012412 277 KESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEA 352 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~ 352 (464)
+++.+++..|+... -..+.+-..+..+.+. +.+++++-.+.....+.. ..+.....+++.+.++..+. +++..++
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~ad 268 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKK-KVKELGLEDKVIFLGVRNDVPELLQAMD 268 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHH-HHHhcCCCCcEEEecccCCHHHHHHhcC
Confidence 44577888888762 2334444444444332 345554433322111111 11122256889999985544 8999999
Q ss_pred ccceecc----CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 353 TGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 353 ~~~vI~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+ +|.- |-..+++||+++|+|+|+....+ ....+++ +.|......++++++++|.++++|+
T Consensus 269 i--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 269 V--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLDESPEIWAEEILKLKSED 332 (358)
T ss_pred E--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCCCCHHHHHHHHHHHHhCc
Confidence 9 6643 34578999999999999865433 3333333 3444444456899999999999997
No 87
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.97 E-value=1.7e-06 Score=83.56 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=86.6
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhh-----CCCeEEEEEcCcccCcCChhhhh-hccCCCcEEEEeccChH-Hhhc
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKS-----SDQHFLWVVRESEQAKLPKKFSD-ETLTSHKSLVVSWCPQL-EVLA 349 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~nv~~~~~~p~~-~ll~ 349 (464)
++..+++.+|+... .+....++++++. .+.+++++..+..... ...... .....+++.+.++.... .++.
T Consensus 191 ~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 267 (365)
T cd03807 191 EDTFLIGIVARLHP--QKDHATLLRAAALLLKKFPNARLLLVGDGPDRAN-LELLALKELGLEDKVILLGERSDVPALLN 267 (365)
T ss_pred CCCeEEEEecccch--hcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhH-HHHHHHHhcCCCceEEEccccccHHHHHH
Confidence 34567788888763 2223333443322 2345555432221111 111111 22255788888766544 8999
Q ss_pred cccccceeccCC----hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCchHHH
Q 012412 350 HEATGCFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKEL 425 (464)
Q Consensus 350 ~~~~~~vI~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~~~~~ 425 (464)
.+++ +|..+. .+++.||+++|+|+|+.. ...+...+.+. |..++..+.+++.+++.++++++ +.+
T Consensus 268 ~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~~---g~~~~~~~~~~l~~~i~~l~~~~--~~~ 336 (365)
T cd03807 268 ALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGDT---GFLVPPGDPEALAEAIEALLADP--ALR 336 (365)
T ss_pred hCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhcC---CEEeCCCCHHHHHHHHHHHHhCh--HHH
Confidence 9999 775443 479999999999999854 44455555555 44455457999999999999986 233
Q ss_pred HHHHHHHHHHHH
Q 012412 426 RRNAGKWRKLAK 437 (464)
Q Consensus 426 ~~~a~~l~~~~~ 437 (464)
++..+...+.++
T Consensus 337 ~~~~~~~~~~~~ 348 (365)
T cd03807 337 QALGEAARERIE 348 (365)
T ss_pred HHHHHHHHHHHH
Confidence 333334333443
No 88
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.95 E-value=1e-06 Score=87.11 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=86.7
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHh---hC--CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhc
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLK---SS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLA 349 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~---~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~ 349 (464)
.+..+++.|... +.+-+..++++++ +. +.+++++..+...+.+ ....+.+...++|.+.+|+|+. +++.
T Consensus 221 ~~~~il~vGrl~--~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l-~~~~~~~~l~~~V~~~G~~~~~el~~~l~ 297 (406)
T PRK15427 221 TPLEIISVARLT--EKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRL-RTLIEQYQLEDVVEMPGFKPSHEVKAMLD 297 (406)
T ss_pred CCeEEEEEeCcc--hhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHH-HHHHHHcCCCCeEEEeCCCCHHHHHHHHH
Confidence 446677788876 2233333444433 22 3344444333222212 1222232356889999999976 6888
Q ss_pred cccccceec--c-------CCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhc-
Q 012412 350 HEATGCFVT--H-------CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE- 418 (464)
Q Consensus 350 ~~~~~~vI~--H-------gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~- 418 (464)
.+|+ +|. + -|+ .+++||+++|+|+|+... ......+++. ..|..++.-+.++++++|.++++
T Consensus 298 ~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~-~~G~lv~~~d~~~la~ai~~l~~~ 370 (406)
T PRK15427 298 DADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEAD-KSGWLVPENDAQALAQRLAAFSQL 370 (406)
T ss_pred hCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCC-CceEEeCCCCHHHHHHHHHHHHhC
Confidence 9999 764 2 354 568999999999998653 3455666666 77888876789999999999998
Q ss_pred CC
Q 012412 419 GE 420 (464)
Q Consensus 419 ~~ 420 (464)
|+
T Consensus 371 d~ 372 (406)
T PRK15427 371 DT 372 (406)
T ss_pred CH
Confidence 75
No 89
>PLN02275 transferase, transferring glycosyl groups
Probab=98.94 E-value=9.8e-07 Score=86.28 Aligned_cols=75 Identities=21% Similarity=0.299 Sum_probs=57.0
Q ss_pred CcEEEEe-ccChH---Hhhccccccceec----c--CC-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc
Q 012412 334 HKSLVVS-WCPQL---EVLAHEATGCFVT----H--CG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP 402 (464)
Q Consensus 334 ~nv~~~~-~~p~~---~ll~~~~~~~vI~----H--gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~ 402 (464)
+|+.+.. |+|.. .+|+.+|+ +|. . -| -+++.||+++|+|+|+.. -..+...+++. +.|...+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~----~gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEec----CCChHHHccCC-CCeEEEC
Confidence 4677665 78876 56999999 773 1 12 357999999999999864 33477778788 8898886
Q ss_pred CcCHHHHHHHHHHHh
Q 012412 403 IVKRDAIADCISEIL 417 (464)
Q Consensus 403 ~~~~~~l~~~i~~ll 417 (464)
++++|+++|.++|
T Consensus 359 --~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --SSSELADQLLELL 371 (371)
T ss_pred --CHHHHHHHHHHhC
Confidence 5899999998875
No 90
>PLN02949 transferase, transferring glycosyl groups
Probab=98.89 E-value=5.8e-06 Score=82.63 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=55.5
Q ss_pred CCCcEEEEeccChH---Hhhccccccceec---cCChh-HHHHHHHhCCcEeccCCcc---chhhHHHHHHhHhcceeec
Q 012412 332 TSHKSLVVSWCPQL---EVLAHEATGCFVT---HCGWN-STMEALSLGVPMVAMPQWS---DQSTNAKYILDVWKTGLKF 401 (464)
Q Consensus 332 ~~~nv~~~~~~p~~---~ll~~~~~~~vI~---HgG~~-s~~eal~~GvP~v~~P~~~---DQ~~na~rl~~~~G~g~~l 401 (464)
+.++|.+.+++|+. .+|..+++ +|+ +-|+| ++.||+++|+|+|+....+ |.-... ... ..|...
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~---~~g-~tG~l~ 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE---DGQ-QTGFLA 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC---CCC-cccccC
Confidence 57899999999866 67888988 773 33444 7899999999999976533 111100 001 124333
Q ss_pred cCcCHHHHHHHHHHHhcC
Q 012412 402 PIVKRDAIADCISEILEG 419 (464)
Q Consensus 402 ~~~~~~~l~~~i~~ll~~ 419 (464)
-+.++++++|.+++++
T Consensus 407 --~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 --TTVEEYADAILEVLRM 422 (463)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2899999999999985
No 91
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.88 E-value=6.6e-07 Score=90.19 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=78.1
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHh---hCCCeEEEEEcCcccCcCChh---hhhhccCCCcEEE-EeccChH--Hhh
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLK---SSDQHFLWVVRESEQAKLPKK---FSDETLTSHKSLV-VSWCPQL--EVL 348 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~nv~~-~~~~p~~--~ll 348 (464)
+.++++..|.+. +.+-+..++++++ +.+.++++.-.+. ....+. +.++ .+.++.+ .+|-... .++
T Consensus 281 ~~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lvivG~g~--~~~~~~l~~l~~~--~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 281 DAPLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLLGTGD--PELEEAFRALAAR--YPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred CCcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEEecCc--HHHHHHHHHHHHH--CCCcEEEEEeCCHHHHHHHH
Confidence 446777888876 2233333444433 3367776664332 111122 2222 4566654 4663322 678
Q ss_pred ccccccceec---cCChh-HHHHHHHhCCcEeccCCcc--chhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhc
Q 012412 349 AHEATGCFVT---HCGWN-STMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 418 (464)
Q Consensus 349 ~~~~~~~vI~---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~ 418 (464)
+.+|+ +|. +-|+| +.+||+++|+|.|+....+ |.-.+...-.+. +.|..++..++++|.++|.+++.
T Consensus 355 ~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 355 AGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred hhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCCCCHHHHHHHHHHHHH
Confidence 99999 773 34554 7899999999999865322 321111111344 67888887789999999999986
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.86 E-value=1e-06 Score=85.56 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=79.7
Q ss_pred CceEEEEeccccc-CCHHHHHHHHHHHhhCC--CeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhccc
Q 012412 278 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSD--QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHE 351 (464)
Q Consensus 278 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~ 351 (464)
...+++..|+... -..+.+-..+..+.+.+ .++++...+...........+.....+|+.+.+++|+. .++..+
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ 273 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGA 273 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhh
Confidence 3456677788762 23444444444443332 45544432221111111110122267899999999876 678899
Q ss_pred cccceecc----CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 352 ATGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 352 ~~~~vI~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
|+ +|.- |..+++.||+++|+|+|+.... .....+.+. |..+...+.+++.+++.+++.|+
T Consensus 274 d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~~---~~~~~~~~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 274 RA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGDA---ALYFDPLDPEALAAAIERLLEDP 337 (365)
T ss_pred hh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecCc---eeeeCCCCHHHHHHHHHHHhcCH
Confidence 98 6533 3346899999999999985542 222223333 44445458999999999999886
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.83 E-value=7.1e-06 Score=80.31 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=80.3
Q ss_pred CceEEEEeccccc-CCHHHHHHHHHHH-hh-CCCeEEEEEcCcccCcC----ChhhhhhccCCCcEEEEecc--ChH---
Q 012412 278 ESVVYVSYGSFVE-LKAEEMEELAWGL-KS-SDQHFLWVVRESEQAKL----PKKFSDETLTSHKSLVVSWC--PQL--- 345 (464)
Q Consensus 278 ~~~v~vs~Gs~~~-~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~nv~~~~~~--p~~--- 345 (464)
+..+++..|.+.. -..+.+-..+..+ +. .+.+++++.++...... -+.+.+.....+++.+.++. ++.
T Consensus 189 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 268 (372)
T cd03792 189 ERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVN 268 (372)
T ss_pred CCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHH
Confidence 3457788888762 2233333333323 22 34566655444221111 11212122245788888876 433
Q ss_pred HhhccccccceeccC---C-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 346 EVLAHEATGCFVTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 346 ~ll~~~~~~~vI~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
.+++.+|+ ++.-. | ..++.||+++|+|+|+... ......+++. ..|...+ +.+.++.+|.+++.|+
T Consensus 269 ~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~----~~~~~~i~~~-~~g~~~~--~~~~~a~~i~~ll~~~ 338 (372)
T cd03792 269 ALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPV----GGIPLQIEDG-ETGFLVD--TVEEAAVRILYLLRDP 338 (372)
T ss_pred HHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCC----CCchhhcccC-CceEEeC--CcHHHHHHHHHHHcCH
Confidence 67889999 87533 3 3489999999999998653 2344556666 6777664 4678888999999886
No 94
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=7.5e-06 Score=77.70 Aligned_cols=312 Identities=14% Similarity=0.154 Sum_probs=173.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEe-CcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVT-TRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (464)
-.+.+..-+.|-++...+|.++|.++ +..|++-+ ++...+.+.+-.. ..+...-+| ++.
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~-~~v~h~YlP--~D~--------------- 111 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG-DSVIHQYLP--LDL--------------- 111 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC-CCeEEEecC--cCc---------------
Confidence 35566667789999999999999999 88888877 6666666652111 124444445 211
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhH--HHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCcee
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWA--LDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (464)
...++...+.++| |++|.-....|. ..-+++.|+|.+.+..--
T Consensus 112 ---------~~~v~rFl~~~~P-~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRL------------------------- 156 (419)
T COG1519 112 ---------PIAVRRFLRKWRP-KLLIIMETELWPNLINELKRRGIPLVLVNARL------------------------- 156 (419)
T ss_pred ---------hHHHHHHHHhcCC-CEEEEEeccccHHHHHHHHHcCCCEEEEeeee-------------------------
Confidence 1222333333467 999887777664 555788999999863311
Q ss_pred CCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCcccccc
Q 012412 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDKQ 249 (464)
Q Consensus 170 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~ 249 (464)
..+...+ + . ..+.+.+..+ .+-+.+++.|...-+ ....+... ++...|-+=-+
T Consensus 157 -------S~rS~~~----y---~-k~~~~~~~~~---~~i~li~aQse~D~~--Rf~~LGa~-~v~v~GNlKfd------ 209 (419)
T COG1519 157 -------SDRSFAR----Y---A-KLKFLARLLF---KNIDLILAQSEEDAQ--RFRSLGAK-PVVVTGNLKFD------ 209 (419)
T ss_pred -------chhhhHH----H---H-HHHHHHHHHH---HhcceeeecCHHHHH--HHHhcCCc-ceEEecceeec------
Confidence 1001101 1 1 1111111222 334577777744222 22222211 24444533111
Q ss_pred ccCcccccccccccchhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhh-CCCeEEEEEcCcccCcCCh--h-
Q 012412 250 IEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKS-SDQHFLWVVRESEQAKLPK--K- 325 (464)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~--~- 325 (464)
......+......|-..-+....+.|..+|... ..+..-...+++.+ .+...++.++. +.+.+++ +
T Consensus 210 --------~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPR-HpERf~~v~~l 279 (419)
T COG1519 210 --------IEPPPQLAAELAALRRQLGGHRPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPR-HPERFKAVENL 279 (419)
T ss_pred --------CCCChhhHHHHHHHHHhcCCCCceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecC-ChhhHHHHHHH
Confidence 100000122222222221111246677777432 34444445555543 33333333322 2221111 0
Q ss_pred ---------hhhhc--c-CCCcEEEEeccChH-Hhhccccc----cceeccCChhHHHHHHHhCCcEeccCCccchhhHH
Q 012412 326 ---------FSDET--L-TSHKSLVVSWCPQL-EVLAHEAT----GCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNA 388 (464)
Q Consensus 326 ---------~~~~~--~-~~~nv~~~~~~p~~-~ll~~~~~----~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na 388 (464)
.+++. . ...+|.+.|-+--+ .++.-+++ +.++-+||.| ..|++++|+|++.=|...-|.+-+
T Consensus 280 ~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~ 358 (419)
T COG1519 280 LKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIA 358 (419)
T ss_pred HHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHH
Confidence 01110 0 22378888876654 66666665 2234688888 579999999999999999999999
Q ss_pred HHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 389 KYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 389 ~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+++++. |+|+.+++ .+.|.++++.++.|+
T Consensus 359 ~~l~~~-ga~~~v~~--~~~l~~~v~~l~~~~ 387 (419)
T COG1519 359 ERLLQA-GAGLQVED--ADLLAKAVELLLADE 387 (419)
T ss_pred HHHHhc-CCeEEECC--HHHHHHHHHHhcCCH
Confidence 999999 99999964 888999999998886
No 95
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.82 E-value=3e-07 Score=90.90 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=61.5
Q ss_pred CCCcEEEEeccChH-Hhhcccccccee--cc--CCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcC
Q 012412 332 TSHKSLVVSWCPQL-EVLAHEATGCFV--TH--CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVK 405 (464)
Q Consensus 332 ~~~nv~~~~~~p~~-~ll~~~~~~~vI--~H--gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~ 405 (464)
..++|.+.+++++. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .+.. |.|..+. .+
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~-~~ 348 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA-AD 348 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC-CC
Confidence 45789999999865 88999999 66 32 455 46999999999999987543321 1235 6677665 68
Q ss_pred HHHHHHHHHHHhcCC
Q 012412 406 RDAIADCISEILEGE 420 (464)
Q Consensus 406 ~~~l~~~i~~ll~~~ 420 (464)
+++++++|.++++|+
T Consensus 349 ~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 349 PADFAAAILALLANP 363 (397)
T ss_pred HHHHHHHHHHHHcCH
Confidence 999999999999986
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=1.3e-05 Score=83.37 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=88.6
Q ss_pred CceEEEEeccccc--CCHHHHHHHHHHHhhCC-CeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhccccc
Q 012412 278 ESVVYVSYGSFVE--LKAEEMEELAWGLKSSD-QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEAT 353 (464)
Q Consensus 278 ~~~v~vs~Gs~~~--~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~~ 353 (464)
...++++.|.+.. ....+++.+...+++.+ .+++++-.+...+.+ +++.+.+.+.++|.+.+|.++. .++..+|+
T Consensus 516 ~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L-~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv 594 (694)
T PRK15179 516 ARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESV-REFAQRLGMGERILFTGLSRRVGYWLTQFNA 594 (694)
T ss_pred CCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHH-HHHHHHcCCCCcEEEcCCcchHHHHHHhcCE
Confidence 3456667777652 12233333333333333 454444333211111 2233333356899999998865 88999999
Q ss_pred cceec---cCCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc--CcCHHHHHHHHHHHhcCCch-HHHH
Q 012412 354 GCFVT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGERG-KELR 426 (464)
Q Consensus 354 ~~vI~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~--~~~~~~l~~~i~~ll~~~~~-~~~~ 426 (464)
+|. +.|+ +++.||+++|+|+|+... ......+++- ..|..++ +.+++++.+++.+++.+... +.++
T Consensus 595 --~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~ 667 (694)
T PRK15179 595 --FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPADTVTAPDVAEALARIHDMCAADPGIA 667 (694)
T ss_pred --EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCCCCCChHHHHHHHHHHHhChhccHHHH
Confidence 764 4554 688999999999998664 3466667776 7788887 55667777777776653210 2566
Q ss_pred HHHHHH
Q 012412 427 RNAGKW 432 (464)
Q Consensus 427 ~~a~~l 432 (464)
+++++.
T Consensus 668 ~~ar~~ 673 (694)
T PRK15179 668 RKAADW 673 (694)
T ss_pred HHHHHH
Confidence 555443
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.78 E-value=5.3e-07 Score=87.49 Aligned_cols=127 Identities=14% Similarity=0.233 Sum_probs=90.3
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhcccccccee
Q 012412 281 VYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGCFV 357 (464)
Q Consensus 281 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~~vI 357 (464)
.++..|++. ..+-...+++++++++.+++++..+... +.+.+. ..+||.+.+++|+. .++..+++-++-
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~~----~~l~~~--~~~~V~~~g~~~~~~~~~~~~~ad~~v~p 268 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPEL----DRLRAK--AGPNVTFLGRVSDEELRDLYARARAFLFP 268 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChhH----HHHHhh--cCCCEEEecCCCHHHHHHHHHhCCEEEEC
Confidence 456677765 3355666778888877777666544322 233332 67899999999985 678899983222
Q ss_pred ccCChh-HHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 358 THCGWN-STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 358 ~HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+.-|+| ++.||+++|+|+|+.... .....+++. +.|..++..+.+++.++|.++++|+
T Consensus 269 s~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i~~~-~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 269 AEEDFGIVPVEAMASGTPVIAYGKG----GALETVIDG-VTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred CcCCCCchHHHHHHcCCCEEEeCCC----CCcceeeCC-CCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 444443 568999999999987643 344556666 7888887668999999999999886
No 98
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.73 E-value=8.1e-08 Score=76.61 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=79.2
Q ss_pred ceEEEEecccccC---CHHHHHHHHHHHhhCCC-eEEEEEcCcccCcCChhhhhhccCCCcEEE--EeccCh-HHhhccc
Q 012412 279 SVVYVSYGSFVEL---KAEEMEELAWGLKSSDQ-HFLWVVRESEQAKLPKKFSDETLTSHKSLV--VSWCPQ-LEVLAHE 351 (464)
Q Consensus 279 ~~v~vs~Gs~~~~---~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~--~~~~p~-~~ll~~~ 351 (464)
..+||+.||.... .--.-....+.|.+.|. +.++..|.+. ...++..... ...+.+.+ .+|-|- .+.++.+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-~~~~d~~~~~-~k~~gl~id~y~f~psl~e~I~~A 81 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-PFFGDPIDLI-RKNGGLTIDGYDFSPSLTEDIRSA 81 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-cCCCCHHHhh-cccCCeEEEEEecCccHHHHHhhc
Confidence 3799999998731 11222345666777786 6667776652 2233332211 01233333 367886 5888889
Q ss_pred cccceeccCChhHHHHHHHhCCcEeccCC----ccchhhHHHHHHhHhc
Q 012412 352 ATGCFVTHCGWNSTMEALSLGVPMVAMPQ----WSDQSTNAKYILDVWK 396 (464)
Q Consensus 352 ~~~~vI~HgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~rl~~~~G 396 (464)
++ ||+|+|.||++|.|..|+|.++++- .+.|-.-|..+++. |
T Consensus 82 dl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-g 127 (170)
T KOG3349|consen 82 DL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-G 127 (170)
T ss_pred cE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-C
Confidence 99 9999999999999999999999994 46899999999998 5
No 99
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.72 E-value=1.2e-05 Score=79.96 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=58.8
Q ss_pred CCCcEEEEeccChH---Hhhccccccceecc---CCh-hHHHHHHHhCCcEeccCCccchhhHHHHHH---hHhcceeec
Q 012412 332 TSHKSLVVSWCPQL---EVLAHEATGCFVTH---CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYIL---DVWKTGLKF 401 (464)
Q Consensus 332 ~~~nv~~~~~~p~~---~ll~~~~~~~vI~H---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~---~~~G~g~~l 401 (464)
+.++|.+.+++|+. .+|..+++ +|+- -|+ -++.||+++|+|+|+.-..+. ....++ +. ..|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe
Confidence 56899999999876 78889998 6642 233 377999999999997543221 112233 45 567665
Q ss_pred cCcCHHHHHHHHHHHhcCC
Q 012412 402 PIVKRDAIADCISEILEGE 420 (464)
Q Consensus 402 ~~~~~~~l~~~i~~ll~~~ 420 (464)
. +++++++++.++++++
T Consensus 377 ~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred C--CHHHHHHHHHHHHhCC
Confidence 3 8999999999999875
No 100
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.71 E-value=7.1e-06 Score=83.04 Aligned_cols=134 Identities=10% Similarity=0.068 Sum_probs=79.9
Q ss_pred CceEEEEeccccc-CCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhh---hhhccCCCcEEEEeccChH---Hhhcc
Q 012412 278 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKF---SDETLTSHKSLVVSWCPQL---EVLAH 350 (464)
Q Consensus 278 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~nv~~~~~~p~~---~ll~~ 350 (464)
+.++++..|.+.. -..+.+-..+..+.+.+.++++.-.+. ....+.+ .++ .+.++.+....+.. .+++.
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~--~~~~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 365 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGD--PELEEALRELAER--YPGNVRVIIGYDEALAHLIYAG 365 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCC--HHHHHHHHHHHHH--CCCcEEEEEcCCHHHHHHHHHh
Confidence 4467777888762 233443333333433456666554332 1122222 222 45678777655554 68899
Q ss_pred ccccceecc---CChh-HHHHHHHhCCcEeccCCcc--chhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhc
Q 012412 351 EATGCFVTH---CGWN-STMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 418 (464)
Q Consensus 351 ~~~~~vI~H---gG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~ 418 (464)
+|+ +|.- -|+| +.+||+++|+|+|+....+ |.-.+...-... +.|...+..++++|.++|.+++.
T Consensus 366 aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 366 ADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred CCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCCCCHHHHHHHHHHHHH
Confidence 999 7742 3444 7799999999999865432 222111101234 66887777789999999999986
No 101
>PLN02316 synthase/transferase
Probab=98.67 E-value=7.1e-05 Score=80.21 Aligned_cols=135 Identities=6% Similarity=0.044 Sum_probs=78.2
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhh---CCCeEEEEEcCcccCcCChh---hhhhcc--CCCcEEEEeccChH---Hh
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLKS---SDQHFLWVVRESEQAKLPKK---FSDETL--TSHKSLVVSWCPQL---EV 347 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~---~~~~~~--~~~nv~~~~~~p~~---~l 347 (464)
.++++..|.+. ..+-+..+++|+.. .+.+++++ |.+....+... +.+++. .+++|.+....+.. .+
T Consensus 840 ~plVg~VGRL~--~qKGvdlLi~Al~~ll~~~~qlVIv-G~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~i 916 (1036)
T PLN02316 840 LPLVGIITRLT--HQKGIHLIKHAIWRTLERNGQVVLL-GSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLI 916 (1036)
T ss_pred CeEEEEEeccc--cccCHHHHHHHHHHHhhcCcEEEEE-eCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHH
Confidence 35666677766 22333344444433 36677654 43211111122 222211 35788887655553 68
Q ss_pred hccccccceecc---CCh-hHHHHHHHhCCcEeccCCcc--chhhH-------HHHHHhHhcceeeccCcCHHHHHHHHH
Q 012412 348 LAHEATGCFVTH---CGW-NSTMEALSLGVPMVAMPQWS--DQSTN-------AKYILDVWKTGLKFPIVKRDAIADCIS 414 (464)
Q Consensus 348 l~~~~~~~vI~H---gG~-~s~~eal~~GvP~v~~P~~~--DQ~~n-------a~rl~~~~G~g~~l~~~~~~~l~~~i~ 414 (464)
++.+|+ |+.- =|+ -+.+||+++|+|.|+....+ |.-.. ++..... +.|...+..+++.|..+|.
T Consensus 917 yaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~tGflf~~~d~~aLa~AL~ 993 (1036)
T PLN02316 917 YAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PNGFSFDGADAAGVDYALN 993 (1036)
T ss_pred HHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-CceEEeCCCCHHHHHHHHH
Confidence 999999 8743 233 47799999999988754322 22111 1111113 4677777788999999999
Q ss_pred HHhcC
Q 012412 415 EILEG 419 (464)
Q Consensus 415 ~ll~~ 419 (464)
++|.+
T Consensus 994 raL~~ 998 (1036)
T PLN02316 994 RAISA 998 (1036)
T ss_pred HHHhh
Confidence 99975
No 102
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.67 E-value=1.4e-07 Score=90.48 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=81.4
Q ss_pred CCCceEEEEecccccCC-H---HHHHHHHHHHhhC-CCeEEEEEcCc--ccCcCChhhhhhccCCCcEEEEeccChH---
Q 012412 276 AKESVVYVSYGSFVELK-A---EEMEELAWGLKSS-DQHFLWVVRES--EQAKLPKKFSDETLTSHKSLVVSWCPQL--- 345 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~--~~~~~~~~~~~~~~~~~nv~~~~~~p~~--- 345 (464)
..++.+++++=...... + ..+..++.++.+. +.++||.++.. ....+.+.+. . . +|+++.+.+++.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~-~--~-~~v~~~~~l~~~~~l 253 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLK-K--Y-DNVRLIEPLGYEEYL 253 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHT-T----TTEEEE----HHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhc-c--c-CCEEEECCCCHHHHH
Confidence 56789999884444433 3 4455556666555 78899999833 2222222222 1 3 599998766654
Q ss_pred HhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCchHHH
Q 012412 346 EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKEL 425 (464)
Q Consensus 346 ~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~~~~~ 425 (464)
.++.++++ +|+-.| |-.-||.++|+|+|.+-...+.+. .... |..+.+ ..+.++|.+++++++.+. .+
T Consensus 254 ~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe----~r~~-~~nvlv-~~~~~~I~~ai~~~l~~~---~~ 321 (346)
T PF02350_consen 254 SLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQE----GRER-GSNVLV-GTDPEAIIQAIEKALSDK---DF 321 (346)
T ss_dssp HHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HH----HHHT-TSEEEE-TSSHHHHHHHHHHHHH-H---HH
T ss_pred HHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHH----HHhh-cceEEe-CCCHHHHHHHHHHHHhCh---HH
Confidence 88899999 999999 544499999999999833222221 2222 444443 478999999999999874 44
Q ss_pred HHHHHH
Q 012412 426 RRNAGK 431 (464)
Q Consensus 426 ~~~a~~ 431 (464)
.++...
T Consensus 322 ~~~~~~ 327 (346)
T PF02350_consen 322 YRKLKN 327 (346)
T ss_dssp HHHHHC
T ss_pred HHhhcc
Confidence 444433
No 103
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.66 E-value=6.8e-05 Score=73.55 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=64.3
Q ss_pred CCCcEEEEeccChH---Hhhccccccceecc----CCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc-
Q 012412 332 TSHKSLVVSWCPQL---EVLAHEATGCFVTH----CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP- 402 (464)
Q Consensus 332 ~~~nv~~~~~~p~~---~ll~~~~~~~vI~H----gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~- 402 (464)
...++.+.+++|+. .+++.+|+ +|.. .|+ .++.||+++|+|+|+... ..+...+++. ..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEeC
Confidence 45789999999865 67999999 7642 444 577899999999998664 3456667777 7787554
Q ss_pred CcCHHHHHHHHHHHhcCC
Q 012412 403 IVKRDAIADCISEILEGE 420 (464)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~ 420 (464)
..+.++++++|.++++|+
T Consensus 328 ~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 328 PMTSDSIISDINRTLADP 345 (380)
T ss_pred CCCHHHHHHHHHHHHcCH
Confidence 678999999999999997
No 104
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.65 E-value=1.8e-05 Score=79.40 Aligned_cols=180 Identities=13% Similarity=0.103 Sum_probs=96.0
Q ss_pred hHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHh--hC--CCeEEEEEcCcccCcCChhhhhhcc-CC-CcEEEE
Q 012412 266 EACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLK--SS--DQHFLWVVRESEQAKLPKKFSDETL-TS-HKSLVV 339 (464)
Q Consensus 266 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~-~~-~nv~~~ 339 (464)
++..+.++..+++++|-+-.||-.+.=...+..++++.+ .+ +.++++...... ..+.+.+... .+ -++.+.
T Consensus 401 ~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---~~~~i~~~~~~~~~~~~~ii 477 (608)
T PRK01021 401 LSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK---YDHLILEVLQQEGCLHSHIV 477 (608)
T ss_pred HHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---hHHHHHHHHhhcCCCCeEEe
Confidence 444444444456789999999976433344555666655 33 445655433221 1122222110 11 122333
Q ss_pred eccChHHhhccccccceeccCChhHHHHHHHhCCcEec-cCCccchhhHHHHHHh-----------Hhccee---ec--c
Q 012412 340 SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVA-MPQWSDQSTNAKYILD-----------VWKTGL---KF--P 402 (464)
Q Consensus 340 ~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~-~P~~~DQ~~na~rl~~-----------~~G~g~---~l--~ 402 (464)
.--...+++..||+ .+.-+|-. +.|+..+|+|||+ .-...=.+.-++++.+ ..|-.+ .+ .
T Consensus 478 ~~~~~~~~m~aaD~--aLaaSGTa-TLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ 554 (608)
T PRK01021 478 PSQFRYELMRECDC--ALAKCGTI-VLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGK 554 (608)
T ss_pred cCcchHHHHHhcCe--eeecCCHH-HHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCc
Confidence 21012589999999 88877754 5799999999998 3333334455666655 101111 22 2
Q ss_pred -CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012412 403 -IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLA 458 (464)
Q Consensus 403 -~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~ 458 (464)
+++++.|++++ ++|.|+ +.+++.++--+++++.. |.+....+|.++-+.
T Consensus 555 ~~~tpe~La~~l-~lL~d~---~~r~~~~~~l~~lr~~L---g~~~~~~~~~~~~~~ 604 (608)
T PRK01021 555 KDFQPEEVAAAL-DILKTS---QSKEKQKDACRDLYQAM---NESASTMKECLSLIF 604 (608)
T ss_pred ccCCHHHHHHHH-HHhcCH---HHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHH
Confidence 57899999997 888886 33333333333333332 233335555555444
No 105
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.64 E-value=4e-06 Score=81.43 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHhhCCCeEEEEEcCcc--cCcCChhhhhhccCCCcEEEEeccChH---Hhh
Q 012412 277 KESVVYVSYGSFV---ELKAEEMEELAWGLKSSDQHFLWVVRESE--QAKLPKKFSDETLTSHKSLVVSWCPQL---EVL 348 (464)
Q Consensus 277 ~~~~v~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll 348 (464)
+++.|++++=... ..+.+.+..+++++.+.+..++++++... ...+.+.+.+.....+|+.+.+.+++. .++
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll 279 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLL 279 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHH
Confidence 3468778775432 34568899999999888766666653321 111122222221014789998765544 889
Q ss_pred ccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhc
Q 012412 349 AHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 418 (464)
Q Consensus 349 ~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~ 418 (464)
.+|++ +|+-++.+. .||.+.|+|+|.+-- -| ...+. |..+.+-..++++|.+++.++++
T Consensus 280 ~~a~~--vitdSSggi-~EA~~lg~Pvv~l~~--R~-----e~~~~-g~nvl~vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 280 KNADA--VIGNSSSGI-IEAPSFGVPTINIGT--RQ-----KGRLR-ADSVIDVDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HhCCE--EEEcChhHH-HhhhhcCCCEEeecC--Cc-----hhhhh-cCeEEEeCCCHHHHHHHHHHHhC
Confidence 99999 998876655 999999999997741 11 11133 33222115789999999999553
No 106
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=1.4e-05 Score=75.16 Aligned_cols=183 Identities=15% Similarity=0.110 Sum_probs=107.7
Q ss_pred chhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhh-----CCCeEEEEEcCcccCcCChhhhhhccCCCcEEE
Q 012412 264 STEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKS-----SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLV 338 (464)
Q Consensus 264 ~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~ 338 (464)
+++.+.+-+....+++++.+-.||-.+.-...+..+.++.++ .+.+|++-+.....+.+..+..+. ....+
T Consensus 174 ~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~----~~~~~ 249 (381)
T COG0763 174 DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKW----EVAGL 249 (381)
T ss_pred cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhc----cccCc
Confidence 456666666555678899999999763222333334444332 356888777655433333333211 11012
Q ss_pred EeccC-hH--HhhccccccceeccCChhHHHHHHHhCCcEecc-CCccchhhHHHHHHhHhccee--------ecc----
Q 012412 339 VSWCP-QL--EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNAKYILDVWKTGL--------KFP---- 402 (464)
Q Consensus 339 ~~~~p-~~--~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~rl~~~~G~g~--------~l~---- 402 (464)
.-++. +. +.+..||+ .+.-+|-. +.|+..+|+|||+. =...=-+.-+.++...|=+++ .++
T Consensus 250 ~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq 326 (381)
T COG0763 250 SLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQ 326 (381)
T ss_pred eEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHh
Confidence 22222 12 67888888 77776654 47999999999983 222223445556555522221 111
Q ss_pred -CcCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 012412 403 -IVKRDAIADCISEILEGER-GKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 457 (464)
Q Consensus 403 -~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l 457 (464)
+++++.|.+++..++.|+. ...+++...++++.++ .+++++.+.+.+++.+
T Consensus 327 ~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 327 EDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred hhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 6889999999999999972 3456666666666666 3446666666666654
No 107
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.61 E-value=5e-05 Score=77.03 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=78.9
Q ss_pred CceEEEEeccccc-CCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhcc-CCCcEEEEeccChH---Hhhcccc
Q 012412 278 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETL-TSHKSLVVSWCPQL---EVLAHEA 352 (464)
Q Consensus 278 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~nv~~~~~~p~~---~ll~~~~ 352 (464)
+..+++..|.+.. -..+.+-..+..+.+.+.++++.-.+. ....+.+.+... .++|+.+....++. .++..+|
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD 372 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD--PEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGAD 372 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC--HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCC
Confidence 4467778888762 233444444444444456666554332 111122221110 35788765433443 5788999
Q ss_pred ccceecc---CCh-hHHHHHHHhCCcEeccCCcc--chhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 353 TGCFVTH---CGW-NSTMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 353 ~~~vI~H---gG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
+ ++.- -|+ .+.+||+++|+|+|+....+ |.-.+...-.+. |.|..++..++++|.+++.+++..
T Consensus 373 v--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 373 F--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEGYNADALLAALRRALAL 442 (476)
T ss_pred E--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCCCCHHHHHHHHHHHHHH
Confidence 9 7742 233 46799999999999865432 221111111134 589888877899999999999853
No 108
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.57 E-value=1.1e-05 Score=77.46 Aligned_cols=162 Identities=22% Similarity=0.195 Sum_probs=94.7
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhh-----CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEecc-ChHHhhc
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKS-----SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWC-PQLEVLA 349 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~-p~~~ll~ 349 (464)
+++++|.+-.||-..-=...+..++++.+. .+.++++..........-...... ...++.+.-.. .-.+++.
T Consensus 182 ~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~m~ 259 (373)
T PF02684_consen 182 PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAE--YPPDVSIVIIEGESYDAMA 259 (373)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHh--hCCCCeEEEcCCchHHHHH
Confidence 577899999999763222333344444322 245676665443222111111111 22333333222 3447888
Q ss_pred cccccceeccCChhHHHHHHHhCCcEecc-CCccchhhHHHHHHhHhcc-ee------------ecc-CcCHHHHHHHHH
Q 012412 350 HEATGCFVTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNAKYILDVWKT-GL------------KFP-IVKRDAIADCIS 414 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~rl~~~~G~-g~------------~l~-~~~~~~l~~~i~ 414 (464)
.+++ .+.-.|- .++|+..+|+|||++ -...=.+.-|+++.+. .- |+ .+. +++++.|.+++.
T Consensus 260 ~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~ 335 (373)
T PF02684_consen 260 AADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KYISLPNIIAGREVVPELIQEDATPENIAAELL 335 (373)
T ss_pred hCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CEeechhhhcCCCcchhhhcccCCHHHHHHHHH
Confidence 8998 7776664 458999999999883 3333455666776554 21 11 111 799999999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHcCCCc
Q 012412 415 EILEGERGKELRRNAGKWRKLAKEAVAKGGSS 446 (464)
Q Consensus 415 ~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 446 (464)
++|.|+ +.++......+.+++....|.++
T Consensus 336 ~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 336 ELLENP---EKRKKQKELFREIRQLLGPGASS 364 (373)
T ss_pred HHhcCH---HHHHHHHHHHHHHHHhhhhccCC
Confidence 999997 44555555556666554445544
No 109
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.57 E-value=1.3e-05 Score=80.91 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=91.8
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHh----hC-CCeEEEEEcCccc-CcCChhhhhhccCCCcEEEEeccChHHhhcccc
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLK----SS-DQHFLWVVRESEQ-AKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEA 352 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~----~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~ 352 (464)
+.++++.|... +.+.+..+++|++ +. +.++++ +|.+.. +.+ .++.+.+...++|.+.++.+...++..++
T Consensus 319 ~~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i-~G~G~~~~~l-~~~i~~~~l~~~V~f~G~~~~~~~~~~ad 394 (500)
T TIGR02918 319 PFSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDI-YGEGGEKQKL-QKIINENQAQDYIHLKGHRNLSEVYKDYE 394 (500)
T ss_pred CeEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEE-EECchhHHHH-HHHHHHcCCCCeEEEcCCCCHHHHHHhCC
Confidence 45677788876 3344444555443 32 334333 443321 112 12222222457899999998889999999
Q ss_pred ccceec---cCCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc-C---cC----HHHHHHHHHHHhcCC
Q 012412 353 TGCFVT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP-I---VK----RDAIADCISEILEGE 420 (464)
Q Consensus 353 ~~~vI~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~-~---~~----~~~l~~~i~~ll~~~ 420 (464)
+ +|. .-|+ .+++||+++|+|+|+.... ..+...+++. ..|..++ . -+ .++|+++|.++++++
T Consensus 395 v--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 395 L--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred E--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHHHhChH
Confidence 9 774 3444 5889999999999975532 1355566666 6787775 2 22 788999999999654
Q ss_pred chHHHHHHHHHHHHHH
Q 012412 421 RGKELRRNAGKWRKLA 436 (464)
Q Consensus 421 ~~~~~~~~a~~l~~~~ 436 (464)
....+.+++.+.++.+
T Consensus 469 ~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 469 DIDAFHEYSYQIAEGF 484 (500)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3345666666655444
No 110
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.52 E-value=3.1e-05 Score=76.62 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=75.0
Q ss_pred EEEEecccccCCHHHHHHHHHHHhh----C-CCeEEEEEcCcccCcCChhhhhhcc-CCCcE-EEEeccChHHhhccccc
Q 012412 281 VYVSYGSFVELKAEEMEELAWGLKS----S-DQHFLWVVRESEQAKLPKKFSDETL-TSHKS-LVVSWCPQLEVLAHEAT 353 (464)
Q Consensus 281 v~vs~Gs~~~~~~~~~~~~~~al~~----~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~nv-~~~~~~p~~~ll~~~~~ 353 (464)
+++..|... ..+-+..++++++. . +.++++ +|.+. ..+++.+... ..-++ .+.++....+++..+|+
T Consensus 230 ~~l~vGRL~--~eK~~~~Li~a~~~l~~~~~~~~l~i-vGdGp---~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~Dv 303 (462)
T PLN02846 230 GAYYIGKMV--WSKGYKELLKLLHKHQKELSGLEVDL-YGSGE---DSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKV 303 (462)
T ss_pred EEEEEecCc--ccCCHHHHHHHHHHHHhhCCCeEEEE-ECCCc---cHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCE
Confidence 556677766 34445555555443 2 334443 44432 2223322110 11122 35567677789999999
Q ss_pred cceeccC----ChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 354 GCFVTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 354 ~~vI~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
||.-+ =..++.||+++|+|+|+.-... + ..+.+- +.|... -+.+++.+++.++|.++
T Consensus 304 --Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~--~~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 304 --FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY--DDGKGFVRATLKALAEE 364 (462)
T ss_pred --EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec--CCHHHHHHHHHHHHccC
Confidence 88663 3467899999999999865432 2 445445 556555 37889999999999864
No 111
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.50 E-value=0.00017 Score=70.55 Aligned_cols=125 Identities=20% Similarity=0.146 Sum_probs=73.9
Q ss_pred eEEEEeccccc-CCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhccccccc
Q 012412 280 VVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGC 355 (464)
Q Consensus 280 ~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~~ 355 (464)
++++.+|++.. ...+.+..++.. ..+..++++-.+.... ....+. ..+||.+.+++|+. .++..+|+.+
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~vliG~~~~~~-~~~~~~----~~~nV~~~G~~~~~~l~~~l~~~Dv~l 278 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAKA--RPDWSFVLIGPVDVSI-DPSALL----RLPNVHYLGPKPYKELPAYLAGFDVAI 278 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHHH--CCCCEEEEECCCcCcc-ChhHhc----cCCCEEEeCCCCHHHHHHHHHhCCEEe
Confidence 46677788863 334444433332 2345655544331111 111111 34899999999976 6788899833
Q ss_pred ee------ccCCh-hHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 356 FV------THCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 356 vI------~HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+- +.++. +.+.|++++|+|+|..++ ...++.. + |..+..-+.+++.++|++++.++
T Consensus 279 ~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 279 LPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIADDPEEFVAAIEKALLED 341 (373)
T ss_pred cCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeCCCHHHHHHHHHHHHhcC
Confidence 22 22333 458999999999998763 2223333 4 33333347999999999987553
No 112
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.45 E-value=2.8e-05 Score=76.07 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=93.7
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhh-----CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhcccc
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLKS-----SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEA 352 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~ 352 (464)
+..+++.|... +.+.+..++++++. .+.++++...+.....+ ....+....++++.+.++.++. .++..++
T Consensus 204 ~~~i~~vgrl~--~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 280 (372)
T cd04949 204 PHKIITVARLA--PEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKL-KELIEELGLEDYVFLKGYTRDLDEVYQKAQ 280 (372)
T ss_pred CCeEEEEEccC--cccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHH-HHHHHHcCCcceEEEcCCCCCHHHHHhhhh
Confidence 34567777765 33333344444332 24566655443322212 1222222256789998887665 8899999
Q ss_pred ccceeccC-C-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCc-hHHHHHHH
Q 012412 353 TGCFVTHC-G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGER-GKELRRNA 429 (464)
Q Consensus 353 ~~~vI~Hg-G-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~-~~~~~~~a 429 (464)
+-++.++. | ..++.||+++|+|+|+..... .....+++. ..|..++..+.++++++|.+++.|++ .+++.+++
T Consensus 281 ~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a 356 (372)
T cd04949 281 LSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAA 356 (372)
T ss_pred EEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 93344442 3 458999999999999864321 245556666 78888877789999999999999862 24455555
Q ss_pred HHHHHHH
Q 012412 430 GKWRKLA 436 (464)
Q Consensus 430 ~~l~~~~ 436 (464)
.+.++.+
T Consensus 357 ~~~~~~~ 363 (372)
T cd04949 357 YENAERY 363 (372)
T ss_pred HHHHHHh
Confidence 5554443
No 113
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.41 E-value=9.7e-05 Score=74.75 Aligned_cols=135 Identities=17% Similarity=0.200 Sum_probs=85.1
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHH---h-hC-CCeEEEEEcCcc-cCcCCh---hhhhhccCCCcEEEEeccChHHh
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGL---K-SS-DQHFLWVVRESE-QAKLPK---KFSDETLTSHKSLVVSWCPQLEV 347 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al---~-~~-~~~~i~~~~~~~-~~~~~~---~~~~~~~~~~nv~~~~~~p~~~l 347 (464)
+++.+++..|... +.+-+..+++++ . +. +.++++ +|+.. .....+ ++.+++...+||.+.+.....++
T Consensus 291 ~~~~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~p~~~l~I-vG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~ 367 (475)
T cd03813 291 KEPPVVGLIGRVV--PIKDIKTFIRAAAIVRKKIPDAEGWV-IGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEY 367 (475)
T ss_pred CCCcEEEEEeccc--cccCHHHHHHHHHHHHHhCCCeEEEE-ECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHH
Confidence 3456777788876 223333333333 2 22 344443 44321 111111 22233335689999996666699
Q ss_pred hccccccceecc----CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhH----h-cceeeccCcCHHHHHHHHHHHhc
Q 012412 348 LAHEATGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDV----W-KTGLKFPIVKRDAIADCISEILE 418 (464)
Q Consensus 348 l~~~~~~~vI~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~----~-G~g~~l~~~~~~~l~~~i~~ll~ 418 (464)
++.+|+ +|.- |-..++.||+++|+|+|+. |.......+++. . ..|...+..+.+++++++.++++
T Consensus 368 l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 368 LPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred HHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 999999 6633 2346899999999999984 344556666662 0 26777777789999999999999
Q ss_pred CC
Q 012412 419 GE 420 (464)
Q Consensus 419 ~~ 420 (464)
|+
T Consensus 442 ~~ 443 (475)
T cd03813 442 DP 443 (475)
T ss_pred CH
Confidence 86
No 114
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.41 E-value=4.5e-05 Score=71.92 Aligned_cols=336 Identities=15% Similarity=0.159 Sum_probs=178.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeCcccc--cccccCCCCCCceEEEcc-CCCCCCCCCCccCHHH
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKG-IKVTLVTTRFFY--KSLHRDSSSSSIPLEAIS-DGYDEGGYAQAESIEA 87 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rG-h~V~~~~~~~~~--~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~ 87 (464)
+++||+++ +|++=.+.-+-+|.+++.+.+ .+..++.+..+. +... ..+....++ ..+.-.-.....++.+
T Consensus 2 ~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~-----~~le~~~i~~pdy~L~i~~~~~tl~~ 75 (383)
T COG0381 2 KMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLD-----QVLELFGIRKPDYDLNIMKPGQTLGE 75 (383)
T ss_pred CceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHH-----HHHHHhCCCCCCcchhccccCCCHHH
Confidence 45677655 467788999999999999987 788888887777 3333 122222333 1121101122344444
Q ss_pred HHHHHHHhCcHHHHHHHHHhcCCCCCccEEEe--CCch-hhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCC
Q 012412 88 YLERFWQIGPQTLTELVEKMNGSDSPVDCIVY--DSIL-LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLT 164 (464)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~--D~~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~ 164 (464)
....... .+.+++++. +| |+|+. |-.+ .+++.+|...+||+.-+...-
T Consensus 76 ~t~~~i~----~~~~vl~~~----kP-D~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl-------------------- 126 (383)
T COG0381 76 ITGNIIE----GLSKVLEEE----KP-DLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL-------------------- 126 (383)
T ss_pred HHHHHHH----HHHHHHHhh----CC-CEEEEeCCcchHHHHHHHHHHhCCceEEEeccc--------------------
Confidence 4433332 344555543 56 99987 4333 667899999999977654332
Q ss_pred CCceeCCCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcC---CeeeecccC
Q 012412 165 GNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTW---SLRTIGPTI 241 (464)
Q Consensus 165 ~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~---~~~~vgp~~ 241 (464)
...... +++. .++.+. ... ++..++++-..- -++++.-. .++.+|-..
T Consensus 127 ---------Rt~~~~-~PEE---------~NR~l~-~~~-----S~~hfapte~ar----~nLl~EG~~~~~IfvtGnt~ 177 (383)
T COG0381 127 ---------RTGDLY-FPEE---------INRRLT-SHL-----SDLHFAPTEIAR----KNLLREGVPEKRIFVTGNTV 177 (383)
T ss_pred ---------ccCCCC-CcHH---------HHHHHH-HHh-----hhhhcCChHHHH----HHHHHcCCCccceEEeCChH
Confidence 001100 1110 111111 000 112222221111 11111111 144444222
Q ss_pred CCccccccccCcccccccccccchhHHH-HHhhcCCCCceEEEEecccccCC---HHHHHHHHHHHhhC-CCeEEEEEcC
Q 012412 242 PSFYLDKQIEDDKDYGFSMFKSSTEACM-KWLNDRAKESVVYVSYGSFVELK---AEEMEELAWGLKSS-DQHFLWVVRE 316 (464)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~v~vs~Gs~~~~~---~~~~~~~~~al~~~-~~~~i~~~~~ 316 (464)
.+.....+.. ...+.... ..+.. ..+..|++|+=...+.. .+.+..+.+.+++. +..+|..++.
T Consensus 178 iDal~~~~~~----------~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~ 246 (383)
T COG0381 178 IDALLNTRDR----------VLEDSKILAKGLDD-KDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHP 246 (383)
T ss_pred HHHHHHHHhh----------hccchhhHHhhhcc-ccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 2211000000 00011111 11222 34568888765444333 23334444455555 5566666555
Q ss_pred cccCcCChhhhhhccCCCcEEEE---eccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHh
Q 012412 317 SEQAKLPKKFSDETLTSHKSLVV---SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILD 393 (464)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~nv~~~---~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~ 393 (464)
.. .+.+-...++...+|+++. +|.++..++.++.+ ++|-.|. -.-||-..|+|++++-..-|++. ..+
T Consensus 247 ~~--~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE----~v~ 317 (383)
T COG0381 247 RP--RVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE----GVE 317 (383)
T ss_pred Ch--hhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc----cee
Confidence 41 1111112332234578887 47788899999998 9988663 45799999999999998888887 222
Q ss_pred Hhcceeecc-CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 012412 394 VWKTGLKFP-IVKRDAIADCISEILEGERGKELRRNAGKWRKLAK 437 (464)
Q Consensus 394 ~~G~g~~l~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 437 (464)
. |-..- ..+.+.+.+++..+++++ ++.++......-.-
T Consensus 318 a---gt~~lvg~~~~~i~~~~~~ll~~~---~~~~~m~~~~npYg 356 (383)
T COG0381 318 A---GTNILVGTDEENILDAATELLEDE---EFYERMSNAKNPYG 356 (383)
T ss_pred c---CceEEeCccHHHHHHHHHHHhhCh---HHHHHHhcccCCCc
Confidence 3 33333 577899999999999997 77776665555544
No 115
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.41 E-value=0.0015 Score=64.33 Aligned_cols=177 Identities=8% Similarity=0.113 Sum_probs=107.8
Q ss_pred HHHhhcCCCCceEEEEecccccC------C-H---HHHHHHHHHHhhCCCeEEEEEcCcc-------cCcCChhhhhhcc
Q 012412 269 MKWLNDRAKESVVYVSYGSFVEL------K-A---EEMEELAWGLKSSDQHFLWVVRESE-------QAKLPKKFSDETL 331 (464)
Q Consensus 269 ~~~l~~~~~~~~v~vs~Gs~~~~------~-~---~~~~~~~~al~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~ 331 (464)
..|+.....+++|.|+.-..... . . +.+..+++.+.+.|+++++.-...+ ......++.+.+.
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 44554433456888886543311 1 2 2333444545455888776654311 0111123334322
Q ss_pred CCCcEEEE--eccChH--HhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceee-cc--Cc
Q 012412 332 TSHKSLVV--SWCPQL--EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLK-FP--IV 404 (464)
Q Consensus 332 ~~~nv~~~--~~~p~~--~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~-l~--~~ 404 (464)
.++++++. ++-|.+ .++.+|++ +|.. =.=++.-|+..|||.+.++.. +-....+++. |.... .+ ++
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y~---~K~~~~~~~l-g~~~~~~~~~~l 377 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINYE---HKSAGIMQQL-GLPEMAIDIRHL 377 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeeeh---HHHHHHHHHc-CCccEEechhhC
Confidence 23444443 233444 88999999 8865 333566789999999999962 4445556777 87755 44 88
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 012412 405 KRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 460 (464)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 460 (464)
+.++|.+.++++++|. +++++..++.-++++.. ..+.+.++++++.+.
T Consensus 378 ~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~~~ 425 (426)
T PRK10017 378 LDGSLQAMVADTLGQL--PALNARLAEAVSRERQT------GMQMVQSVLERIGEV 425 (426)
T ss_pred CHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhccC
Confidence 9999999999999985 35666666666666543 456777888777653
No 116
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.40 E-value=4.4e-06 Score=71.99 Aligned_cols=138 Identities=21% Similarity=0.237 Sum_probs=89.2
Q ss_pred CCCceEEEEeccccc-CCHHHHHHHHHHHh-h-CCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---Hhhc
Q 012412 276 AKESVVYVSYGSFVE-LKAEEMEELAWGLK-S-SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLA 349 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~ 349 (464)
..++.+++..|+... -..+.+-.++.-+. + .+.-.++.+|............+.....+++.+.+++++. .++.
T Consensus 12 ~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 91 (172)
T PF00534_consen 12 PDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYK 91 (172)
T ss_dssp -TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHH
T ss_pred CCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccc
Confidence 356678888888763 23333333333332 1 2333444444221111112222222256899999999833 8889
Q ss_pred cccccceecc----CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 350 HEATGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 350 ~~~~~~vI~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
.+++ +|+. |...++.||+++|+|+|+. +...+...+.+. +.|..++..+.+++.++|.+++.++
T Consensus 92 ~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 92 SSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp HTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCCCCHHHHHHHHHHHHCCH
Confidence 9999 8866 5677999999999999963 466777777788 8899998559999999999999885
No 117
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=0.00042 Score=69.44 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=79.3
Q ss_pred eEEEEecccc--cCCHHHHHHHHHHHhhC-CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-Hhhccccccc
Q 012412 280 VVYVSYGSFV--ELKAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATGC 355 (464)
Q Consensus 280 ~v~vs~Gs~~--~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~~~~ 355 (464)
.++.+.|.+. .....+++.+...++.. +.+++++-.+...+.+ ....+.+...++|.+.+|..+. .+|..+|+
T Consensus 399 ~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeL-k~la~elgL~d~V~FlG~~~Dv~~~LaaADV-- 475 (578)
T PRK15490 399 TTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEA-QKRAEQLGILERILFVGASRDVGYWLQKMNV-- 475 (578)
T ss_pred cEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHH-HHHHHHcCCCCcEEECCChhhHHHHHHhCCE--
Confidence 4556666655 23445555555555543 4455554433221112 1222222256899999997654 88999999
Q ss_pred eec---cCC-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHH
Q 012412 356 FVT---HCG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCI 413 (464)
Q Consensus 356 vI~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i 413 (464)
||. +-| .+++.||+++|+|+|+... ..+...+.+. ..|..++..+.+.+.+++
T Consensus 476 fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 476 FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDDAQTVNLDQAC 532 (578)
T ss_pred EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECCCChhhHHHHH
Confidence 885 345 4689999999999997653 4567777777 889888844566666555
No 118
>PLN02939 transferase, transferring glycosyl groups
Probab=98.31 E-value=0.0011 Score=70.25 Aligned_cols=134 Identities=8% Similarity=0.133 Sum_probs=79.6
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHh---hCCCeEEEEEcCcccCcCC---hhhhhhccCCCcEEEEeccChH---Hhhc
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLK---SSDQHFLWVVRESEQAKLP---KKFSDETLTSHKSLVVSWCPQL---EVLA 349 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~nv~~~~~~p~~---~ll~ 349 (464)
.+++...|.+.. .+-+..+++++. ..+.+++++-.+.. .... ..+.+++...++|.+..+.+.. .+++
T Consensus 779 ~pLIg~VGRL~~--QKGiDlLleA~~~Ll~~dvqLVIvGdGp~-~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYA 855 (977)
T PLN02939 779 QPLVGCITRLVP--QKGVHLIRHAIYKTAELGGQFVLLGSSPV-PHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYA 855 (977)
T ss_pred ceEEEEeecCCc--ccChHHHHHHHHHHhhcCCEEEEEeCCCc-HHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHH
Confidence 356777777762 233333334332 34667655543321 1111 1223332245789999888764 6899
Q ss_pred cccccceecc---CC-hhHHHHHHHhCCcEeccCCcc--chhhH--HH-HHHhHhcceeeccCcCHHHHHHHHHHHhc
Q 012412 350 HEATGCFVTH---CG-WNSTMEALSLGVPMVAMPQWS--DQSTN--AK-YILDVWKTGLKFPIVKRDAIADCISEILE 418 (464)
Q Consensus 350 ~~~~~~vI~H---gG-~~s~~eal~~GvP~v~~P~~~--DQ~~n--a~-rl~~~~G~g~~l~~~~~~~l~~~i~~ll~ 418 (464)
.+|+ ||.- =| ..+.+||+++|+|.|+....+ |.-.+ .. ..++. +-|...+..+++.|..+|.+++.
T Consensus 856 aADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 856 ASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTFLTPDEQGLNSALERAFN 930 (977)
T ss_pred hCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEecCCCHHHHHHHHHHHHH
Confidence 9999 8843 23 347899999999999865433 22111 11 11224 56777776789999999988874
No 119
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.29 E-value=0.0012 Score=65.27 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=71.3
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhCCCeEE-EEEcCcccCcCChhhhhhccCCCcEEEEeccCh----HHhhcccccc
Q 012412 280 VVYVSYGSFVELKAEEMEELAWGLKSSDQHFL-WVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQ----LEVLAHEATG 354 (464)
Q Consensus 280 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~----~~ll~~~~~~ 354 (464)
.+++..|.......+-...+++|++.++..+. +.+|.... . ..+++...++... ..++..+|+
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~----~-------~~~~v~~~g~~~~~~~l~~~y~~aDv- 309 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP----F-------TAGNVVNHGFETDKRKLMSALNQMDA- 309 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc----c-------cccceEEecCcCCHHHHHHHHHhCCE-
Confidence 34455555332233445678888877654433 33333211 1 2356766776632 366778999
Q ss_pred ceeccC----ChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHH
Q 012412 355 CFVTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCIS 414 (464)
Q Consensus 355 ~vI~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~ 414 (464)
||.-. -..++.||+++|+|+|+....+ ..+ +.+. +.|..++.-+.++|++.++
T Consensus 310 -fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~~d~~~La~~~~ 366 (405)
T PRK10125 310 -LVFSSRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTVSEEEVLQLAQLSK 366 (405)
T ss_pred -EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEECCCCHHHHHhccC
Confidence 87532 2357899999999999877543 233 3345 6688888668888887643
No 120
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.12 E-value=5.3e-05 Score=74.32 Aligned_cols=141 Identities=17% Similarity=0.304 Sum_probs=84.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccC--cCChhhhhhccCCCcEEEEeccChHH---hhcc
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQA--KLPKKFSDETLTSHKSLVVSWCPQLE---VLAH 350 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~nv~~~~~~p~~~---ll~~ 350 (464)
+++.++|.+|.......++.++.-.+.|++.+...+|........ .+...+.+....++++.+.++.|..+ .+..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 456799999999998999999999999999998888877543211 11112222211457899988888664 4455
Q ss_pred cccccee---ccCChhHHHHHHHhCCcEeccCCcc-chhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 351 EATGCFV---THCGWNSTMEALSLGVPMVAMPQWS-DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 351 ~~~~~vI---~HgG~~s~~eal~~GvP~v~~P~~~-DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+|+ ++ ..+|.+|.+|||+.|||+|.+|-.. =...-+..+..+ |+...+- .+.++..+.--++-.|.
T Consensus 362 ~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA-~s~~eYv~~Av~La~D~ 431 (468)
T PF13844_consen 362 ADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIA-DSEEEYVEIAVRLATDP 431 (468)
T ss_dssp -SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB--SSHHHHHHHHHHHHH-H
T ss_pred CCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcC-CCHHHHHHHHHHHhCCH
Confidence 777 65 6789999999999999999999533 344456667777 7775553 45677777667777775
No 121
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.12 E-value=7.3e-05 Score=74.05 Aligned_cols=132 Identities=16% Similarity=0.248 Sum_probs=82.9
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHhh---C--CCeEEEEEcCcccCcCChhhhh---hccCCCcEEEEeccChH---H
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGLKS---S--DQHFLWVVRESEQAKLPKKFSD---ETLTSHKSLVVSWCPQL---E 346 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~~~---~~~~~~nv~~~~~~p~~---~ 346 (464)
++..++++|.+... +.+..+++++.+ . +..+.|+.-++. ...+.+.+ .....++|.+.+|+++. .
T Consensus 229 ~~~~il~~Grl~~~--Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g--~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~ 304 (407)
T cd04946 229 DTLRIVSCSYLVPV--KRVDLIIKALAALAKARPSIKIKWTHIGGG--PLEDTLKELAESKPENISVNFTGELSNSEVYK 304 (407)
T ss_pred CCEEEEEeeccccc--cCHHHHHHHHHHHHHhCCCceEEEEEEeCc--hHHHHHHHHHHhcCCCceEEEecCCChHHHHH
Confidence 44677778887622 223333344332 1 235555443321 11122221 11134689999999976 4
Q ss_pred hhcc--ccccceeccC---C-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc-CcCHHHHHHHHHHHhcC
Q 012412 347 VLAH--EATGCFVTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP-IVKRDAIADCISEILEG 419 (464)
Q Consensus 347 ll~~--~~~~~vI~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~-~~~~~~l~~~i~~ll~~ 419 (464)
++.. +++ +|... | ..+++||+++|+|+|+.. -......+.+. +.|..+. ..+.+++.++|.++++|
T Consensus 305 ~~~~~~~~v--~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~-~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 305 LYKENPVDV--FVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNG-GNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHhhcCCCE--EEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCC-CcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 5544 455 76443 2 467899999999999754 44466667666 6898887 66899999999999988
Q ss_pred C
Q 012412 420 E 420 (464)
Q Consensus 420 ~ 420 (464)
+
T Consensus 378 ~ 378 (407)
T cd04946 378 E 378 (407)
T ss_pred H
Confidence 6
No 122
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=2.4e-05 Score=61.51 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=70.9
Q ss_pred EEEEecccccCCHHHHHH--HHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEec--cC-hHHhhccccccc
Q 012412 281 VYVSYGSFVELKAEEMEE--LAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSW--CP-QLEVLAHEATGC 355 (464)
Q Consensus 281 v~vs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--~p-~~~ll~~~~~~~ 355 (464)
+|||.||....=...+.. +....+.-..++|+.+|.+... | ..+ .++.+| -+ .+.+...+++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~k--p--------vag-l~v~~F~~~~kiQsli~darI-- 68 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDIK--P--------VAG-LRVYGFDKEEKIQSLIHDARI-- 68 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCcc--c--------ccc-cEEEeechHHHHHHHhhcceE--
Confidence 789999985211111111 2222233345889999875322 2 111 244443 34 4488888888
Q ss_pred eeccCChhHHHHHHHhCCcEeccCCcc--------chhhHHHHHHhHhcceeecc
Q 012412 356 FVTHCGWNSTMEALSLGVPMVAMPQWS--------DQSTNAKYILDVWKTGLKFP 402 (464)
Q Consensus 356 vI~HgG~~s~~eal~~GvP~v~~P~~~--------DQ~~na~rl~~~~G~g~~l~ 402 (464)
||+|+|-||+..++..++|.+++|-.. .|-.-|..+.+. +.=....
T Consensus 69 VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~s 122 (161)
T COG5017 69 VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACS 122 (161)
T ss_pred EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEc
Confidence 999999999999999999999999643 577788888888 6555443
No 123
>PRK14099 glycogen synthase; Provisional
Probab=98.04 E-value=0.0089 Score=60.52 Aligned_cols=133 Identities=16% Similarity=0.225 Sum_probs=71.9
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHh---hCCCeEEEEEcCcccCcCChhhh---hhccCCCcE-EEEeccChH-Hhh-c
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLK---SSDQHFLWVVRESEQAKLPKKFS---DETLTSHKS-LVVSWCPQL-EVL-A 349 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~nv-~~~~~~p~~-~ll-~ 349 (464)
.+++...|... +.+-+..++++++ +.+.++++.-.+.. .+.+.+. ++ .++++ .+.+|-... .++ +
T Consensus 295 ~~li~~VgRL~--~~KG~d~Li~A~~~l~~~~~~lvivG~G~~--~~~~~l~~l~~~--~~~~v~~~~G~~~~l~~~~~a 368 (485)
T PRK14099 295 ALLLGVISRLS--WQKGLDLLLEALPTLLGEGAQLALLGSGDA--ELEARFRAAAQA--YPGQIGVVIGYDEALAHLIQA 368 (485)
T ss_pred CcEEEEEecCC--ccccHHHHHHHHHHHHhcCcEEEEEecCCH--HHHHHHHHHHHH--CCCCEEEEeCCCHHHHHHHHh
Confidence 34555667765 2233333444433 33566665544321 1122222 22 34565 566774333 344 5
Q ss_pred cccccceec---cCChh-HHHHHHHhCCcEeccCCcc--chhhHHH-H--HHhHhcceeeccCcCHHHHHHHHHH---Hh
Q 012412 350 HEATGCFVT---HCGWN-STMEALSLGVPMVAMPQWS--DQSTNAK-Y--ILDVWKTGLKFPIVKRDAIADCISE---IL 417 (464)
Q Consensus 350 ~~~~~~vI~---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~-r--l~~~~G~g~~l~~~~~~~l~~~i~~---ll 417 (464)
.+|+ ||. +=|+| +.+||+++|+|.|+....+ |.-.... . .+.. +.|...+..++++|.++|.+ ++
T Consensus 369 ~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~~d~~~La~ai~~a~~l~ 445 (485)
T PRK14099 369 GADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSPVTADALAAALRKTAALF 445 (485)
T ss_pred cCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCCCCHHHHHHHHHHHHHHh
Confidence 6898 774 34444 6689999998777654322 3211110 0 1112 35787776789999999997 56
Q ss_pred cCC
Q 012412 418 EGE 420 (464)
Q Consensus 418 ~~~ 420 (464)
+|+
T Consensus 446 ~d~ 448 (485)
T PRK14099 446 ADP 448 (485)
T ss_pred cCH
Confidence 664
No 124
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.96 E-value=0.0077 Score=61.74 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=54.8
Q ss_pred cEEEEeccChH-Hhhccccccceec---cCC-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHH
Q 012412 335 KSLVVSWCPQL-EVLAHEATGCFVT---HCG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAI 409 (464)
Q Consensus 335 nv~~~~~~p~~-~ll~~~~~~~vI~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l 409 (464)
++.+.++.++. .+++.+|+ ||. +=| ..++.||+++|+|+|+....+... +.+. +.|... -+.+++
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGll~--~D~Eaf 671 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCLTY--KTSEDF 671 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeEec--CCHHHH
Confidence 57777888766 69999999 875 333 457899999999999976544221 2223 333333 478999
Q ss_pred HHHHHHHhcCC
Q 012412 410 ADCISEILEGE 420 (464)
Q Consensus 410 ~~~i~~ll~~~ 420 (464)
.+++.++|.++
T Consensus 672 AeAI~~LLsd~ 682 (794)
T PLN02501 672 VAKVKEALANE 682 (794)
T ss_pred HHHHHHHHhCc
Confidence 99999999886
No 125
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.95 E-value=0.00058 Score=61.11 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=38.0
Q ss_pred CCCcEEEEeccCh-H---HhhccccccceeccCC----hhHHHHHHHhCCcEeccCCcc
Q 012412 332 TSHKSLVVSWCPQ-L---EVLAHEATGCFVTHCG----WNSTMEALSLGVPMVAMPQWS 382 (464)
Q Consensus 332 ~~~nv~~~~~~p~-~---~ll~~~~~~~vI~HgG----~~s~~eal~~GvP~v~~P~~~ 382 (464)
..+|+.+.++++. . .++..+++ +|+-.. .+++.||+++|+|+|+.+...
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 5678999988632 2 45555999 887766 789999999999999977654
No 126
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00082 Score=66.15 Aligned_cols=107 Identities=15% Similarity=0.247 Sum_probs=82.8
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhcc----CCCcEEEEeccChH---Hhh
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETL----TSHKSLVVSWCPQL---EVL 348 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~nv~~~~~~p~~---~ll 348 (464)
+++.+||++++......++.+..-++.++..+..++|..+++....+-..+++.+. ..+++++.+-.|.. +-+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 45679999999999889999999999999999999999988544433333332211 35788888877644 556
Q ss_pred cccccccee---ccCChhHHHHHHHhCCcEeccCCccchhh
Q 012412 349 AHEATGCFV---THCGWNSTMEALSLGVPMVAMPQWSDQST 386 (464)
Q Consensus 349 ~~~~~~~vI---~HgG~~s~~eal~~GvP~v~~P~~~DQ~~ 386 (464)
..+|+ |. -.||..|..|+|..|||+|..+ ++|+-
T Consensus 507 ~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 507 GIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred chhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 66777 76 6899999999999999999877 66654
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.74 E-value=7.5e-05 Score=61.39 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=51.6
Q ss_pred CCcEEEEeccChH-Hhhccccccceecc--CC-hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHH
Q 012412 333 SHKSLVVSWCPQL-EVLAHEATGCFVTH--CG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDA 408 (464)
Q Consensus 333 ~~nv~~~~~~p~~-~ll~~~~~~~vI~H--gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~ 408 (464)
.+||.+.+|++.. +++..+++.+..+. .| .+++.|++++|+|+|+.+. .....++.. +.|..+ .-++++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~~~~~~ 124 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-ANDPEE 124 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--TT-HHH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-CCCHHH
Confidence 4699999999644 88999999555442 23 4899999999999998765 123344446 777777 568999
Q ss_pred HHHHHHHHhcC
Q 012412 409 IADCISEILEG 419 (464)
Q Consensus 409 l~~~i~~ll~~ 419 (464)
+.++|.++++|
T Consensus 125 l~~~i~~l~~d 135 (135)
T PF13692_consen 125 LAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 128
>PHA01633 putative glycosyl transferase group 1
Probab=97.67 E-value=0.00058 Score=64.93 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCCcEEEE---eccChH---Hhhccccccceecc---CCh-hHHHHHHHhCCcEeccCC------ccch------hhHHH
Q 012412 332 TSHKSLVV---SWCPQL---EVLAHEATGCFVTH---CGW-NSTMEALSLGVPMVAMPQ------WSDQ------STNAK 389 (464)
Q Consensus 332 ~~~nv~~~---~~~p~~---~ll~~~~~~~vI~H---gG~-~s~~eal~~GvP~v~~P~------~~DQ------~~na~ 389 (464)
.+++|.+. +++++. .+++.+|+ +|.- -|+ .++.||+++|+|+|+.-. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 67889988 455544 78899999 8753 344 578999999999998532 2222 23333
Q ss_pred HHH--hHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 390 YIL--DVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 390 rl~--~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
-.. .. |.|...+..++++++++|.+++..+
T Consensus 277 ~~~~~~~-g~g~~~~~~d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 277 EYYDKEH-GQKWKIHKFQIEDMANAIILAFELQ 308 (335)
T ss_pred HhcCccc-CceeeecCCCHHHHHHHHHHHHhcc
Confidence 333 35 6777777889999999999996543
No 129
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.66 E-value=0.0033 Score=60.10 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=82.9
Q ss_pred HhhcCCCCceEEEEecccc---cCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEe--ccChH
Q 012412 271 WLNDRAKESVVYVSYGSFV---ELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--WCPQL 345 (464)
Q Consensus 271 ~l~~~~~~~~v~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--~~p~~ 345 (464)
++....+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..++.......+++.+. .+. ..+.+ -+++.
T Consensus 172 ~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~--~~~-~~l~g~~sL~el 248 (319)
T TIGR02193 172 FLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEA--LPG-AVVLPKMSLAEV 248 (319)
T ss_pred hhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhh--CCC-CeecCCCCHHHH
Confidence 4433234567777777643 5688999999999876677877665543322222333332 222 23333 23444
Q ss_pred -HhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhccee------eccCcCHHHHHHHHHHHh
Q 012412 346 -EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGL------KFPIVKRDAIADCISEIL 417 (464)
Q Consensus 346 -~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~------~l~~~~~~~l~~~i~~ll 417 (464)
.++.+|++ +|+. -.|.++=|.+.|+|.|.+=-..+ ..+..=. |-.. .+...+++++.++++++|
T Consensus 249 ~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~----p~~~~P~-~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 249 AALLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATD----PGRTGGY-GKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCC----HhhcccC-CCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 89999999 9987 78999999999999987411111 1111001 1111 122789999999998765
No 130
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.64 E-value=0.00089 Score=64.39 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=73.6
Q ss_pred CCCcEEEEeccChHHh---hccccccceecc-------CCh------hHHHHHHHhCCcEeccCCccchhhHHHHHHhHh
Q 012412 332 TSHKSLVVSWCPQLEV---LAHEATGCFVTH-------CGW------NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVW 395 (464)
Q Consensus 332 ~~~nv~~~~~~p~~~l---l~~~~~~~vI~H-------gG~------~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~ 395 (464)
..+||.+.+|+|+.++ |.. +.+++... +.+ +-+.+++++|+|+|+. ++...+..+++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 5689999999998855 444 43333221 111 2377899999999974 467889999999
Q ss_pred cceeeccCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 012412 396 KTGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLAKE 438 (464)
Q Consensus 396 G~g~~l~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~ 438 (464)
++|..++ +.+++.+++.++. +++..++++|++++++++++
T Consensus 279 ~~G~~v~--~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 279 GLGFVVD--SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN 318 (333)
T ss_pred CceEEeC--CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc
Confidence 9999996 6678999998864 33345799999999999983
No 131
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.63 E-value=0.0056 Score=59.38 Aligned_cols=99 Identities=9% Similarity=0.153 Sum_probs=65.7
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHhhCCCeEEEEEcCcccC-cCChhhhhhccCCCcEEEEec--cChH-Hhhc
Q 012412 277 KESVVYVSYGSFV---ELKAEEMEELAWGLKSSDQHFLWVVRESEQA-KLPKKFSDETLTSHKSLVVSW--CPQL-EVLA 349 (464)
Q Consensus 277 ~~~~v~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~nv~~~~~--~p~~-~ll~ 349 (464)
+++.|.+..|+.. ..+.+.+.++++.|.+.++++++..++.+.+ ...+++.+....+..+-+.+- +.+. .++.
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 3568888888864 5688999999999987788877665543211 111222221001122334443 3333 8999
Q ss_pred cccccceeccCChhHHHHHHHhCCcEecc
Q 012412 350 HEATGCFVTHCGWNSTMEALSLGVPMVAM 378 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~~GvP~v~~ 378 (464)
+|++ ||+. -.|-++=|.+.|+|.|.+
T Consensus 262 ~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 262 HAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred hCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 9999 9998 788999999999999874
No 132
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.57 E-value=0.011 Score=57.25 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=68.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCcccccccccCCCCCCceEE-EccCCCCCCCCCCccCHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIPLE-AISDGYDEGGYAQAESIEAYLE 90 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~ 90 (464)
||||++-..+-|++.-+.++.+.|+++ +.+|++++.+...+.++. .+.+.-+ .++.. . .....
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---~P~vd~vi~~~~~--~----~~~~~----- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR---MPEVNEAIPMPLG--H----GALEI----- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc---CCccCEEEecccc--c----chhhh-----
Confidence 589999999999999999999999996 899999999888777772 2222221 11210 0 00000
Q ss_pred HHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEE
Q 012412 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAP 139 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~ 139 (464)
....++++++.. +.||+||.-....-...++...|+|.-+
T Consensus 67 -------~~~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 -------GERRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -------HHHHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112344455554 3589999765555566778888888654
No 133
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.43 E-value=0.0085 Score=57.93 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=64.8
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHhhCCCeEEEEEcCcccC-cCChhhhhhccCC-CcE-EEEec--cChH-Hh
Q 012412 277 KESVVYVSYGSFV---ELKAEEMEELAWGLKSSDQHFLWVVRESEQA-KLPKKFSDETLTS-HKS-LVVSW--CPQL-EV 347 (464)
Q Consensus 277 ~~~~v~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~-~nv-~~~~~--~p~~-~l 347 (464)
+++.|.+..|+.. ..+.+.+.++++.+.+.+.++++..++.+.+ ..-+++.+. .+ .++ -+.+- +.+. .+
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~--~~~~~~~~l~g~~sL~el~al 257 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQG--CQTPRVTSLAGKLTLPQLAAL 257 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhh--CCCCcccccCCCCCHHHHHHH
Confidence 4567888888754 4688999999998877678877664432111 112233222 11 122 23332 3334 89
Q ss_pred hccccccceeccCChhHHHHHHHhCCcEecc
Q 012412 348 LAHEATGCFVTHCGWNSTMEALSLGVPMVAM 378 (464)
Q Consensus 348 l~~~~~~~vI~HgG~~s~~eal~~GvP~v~~ 378 (464)
+.++++ ||+. -.|.++=|.+.|+|.|.+
T Consensus 258 i~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 258 IDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 999999 9998 889999999999999974
No 134
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.42 E-value=0.016 Score=55.71 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCceEEEEeccc--c--cCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEE-EEe--ccChH-Hhh
Q 012412 277 KESVVYVSYGSF--V--ELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSL-VVS--WCPQL-EVL 348 (464)
Q Consensus 277 ~~~~v~vs~Gs~--~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~--~~p~~-~ll 348 (464)
+++.|.+..|+. . ..+.+.+.++++.+.+.+.++++..++. .....+++.+. .+.++. +.+ -+.+. .++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~-e~~~~~~i~~~--~~~~~~~l~g~~sL~el~ali 249 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAK-DHPAGNEIEAL--LPGELRNLAGETSLDEAVDLI 249 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChh-hHHHHHHHHHh--CCcccccCCCCCCHHHHHHHH
Confidence 567898988874 2 4689999999998877677766654332 22222333322 233322 333 23333 899
Q ss_pred ccccccceeccCChhHHHHHHHhCCcEecc
Q 012412 349 AHEATGCFVTHCGWNSTMEALSLGVPMVAM 378 (464)
Q Consensus 349 ~~~~~~~vI~HgG~~s~~eal~~GvP~v~~ 378 (464)
+++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 250 ~~a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 250 ALAKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred HhCCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 99999 9988 788999999999999873
No 135
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.36 E-value=0.0076 Score=57.66 Aligned_cols=132 Identities=12% Similarity=0.074 Sum_probs=79.8
Q ss_pred CceEEEEec-ccc--cCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEe--ccChH-Hhhccc
Q 012412 278 ESVVYVSYG-SFV--ELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--WCPQL-EVLAHE 351 (464)
Q Consensus 278 ~~~v~vs~G-s~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--~~p~~-~ll~~~ 351 (464)
++.|.+..| +.. ..+.+.+.++++.+.+.+.++++..|+..+....+.+.+. ..++.+.+ .+.+. .++.+|
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~---~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEG---FPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHcc---CCcceecCCCCHHHHHHHHHhC
Confidence 345544444 433 4689999999999877777876654543322222333221 12344443 33444 899999
Q ss_pred cccceeccCChhHHHHHHHhCCcEecc--CCccc----hhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhc
Q 012412 352 ATGCFVTHCGWNSTMEALSLGVPMVAM--PQWSD----QSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 418 (464)
Q Consensus 352 ~~~~vI~HgG~~s~~eal~~GvP~v~~--P~~~D----Q~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~ 418 (464)
++ +|+. -.|.++=|.+.|+|.|++ |.... ...|...+. -++..+...+++.+.++++++|+
T Consensus 255 ~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~---~~~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 255 KA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR---SPGKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred CE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec---CCCcccccCCHHHHHHHHHHHhh
Confidence 99 9987 788999999999999984 22111 111111111 11222337889999999988774
No 136
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.32 E-value=0.013 Score=58.41 Aligned_cols=153 Identities=20% Similarity=0.303 Sum_probs=98.2
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhh----hhccCCCcEEEEeccChHHh----
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFS----DETLTSHKSLVVSWCPQLEV---- 347 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~nv~~~~~~p~~~l---- 347 (464)
+++.+||++|-..-..+|+.++.-.+.|++.+..++|......... ..|+ +....|++|.+.+-++..+-
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--HHHHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 4566899999877778999999999999999999999986543221 2222 11115678888777665533
Q ss_pred -hccccccceeccCChhHHHHHHHhCCcEeccCCccchhh-HHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCchHHH
Q 012412 348 -LAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQST-NAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKEL 425 (464)
Q Consensus 348 -l~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~-na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~~~~~ 425 (464)
|+...+....+. |..|.++.|+.|||||.+|...--.. -+..+... |+|..+- -+.++..+.--++-.|
T Consensus 834 ~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hlia-k~~eEY~~iaV~Latd------ 904 (966)
T KOG4626|consen 834 QLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIA-KNREEYVQIAVRLATD------ 904 (966)
T ss_pred hhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHh-hhHHHHHHHHHHhhcC------
Confidence 333333335555 88899999999999999996543333 34456667 8887553 2344444433344444
Q ss_pred HHHHHHHHHHHHHH
Q 012412 426 RRNAGKWRKLAKEA 439 (464)
Q Consensus 426 ~~~a~~l~~~~~~~ 439 (464)
+...++++.+++++
T Consensus 905 ~~~L~~lr~~l~~~ 918 (966)
T KOG4626|consen 905 KEYLKKLRAKLRKA 918 (966)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455555554
No 137
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.32 E-value=0.03 Score=53.84 Aligned_cols=266 Identities=16% Similarity=0.153 Sum_probs=143.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (464)
+||||++-...-|++.=.+++-+.|+++ +.++++++.+.+.+.+.. ...+.-+-+-..... .
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~---~p~I~~vi~~~~~~~-------~------ 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKL---NPEIDKVIIIDKKKK-------G------ 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhc---ChHhhhhcccccccc-------c------
Confidence 4799999999999999999999999998 599999999988877772 111111111000000 0
Q ss_pred HHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCceeC
Q 012412 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILL 170 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (464)
........+.+.+.. ..||+||.=....-...++...++|.-+-.-.....
T Consensus 65 ----~~~~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~~~~~r----------------------- 115 (334)
T COG0859 65 ----LGLKERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRIGFDKKSAR----------------------- 115 (334)
T ss_pred ----cchHHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCcccccccccch-----------------------
Confidence 112233455555554 348999987666667777778888855421100000
Q ss_pred CCCCCCCCCCCCCccccCCCCchHHHHHHHHHhhhccCCcEEEecchhhhhHHHHHHHHhcCCeeeecccCCCccccccc
Q 012412 171 PGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTIGPTIPSFYLDKQI 250 (464)
Q Consensus 171 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~vgp~~~~~~~~~~~ 250 (464)
..+..... .. ... -...+.++. ....... .|-.....
T Consensus 116 ---------------------~~~~~~~~-~~---~~~-----~~~~~~~~~-~~~l~~~------~~~~~~~~------ 152 (334)
T COG0859 116 ---------------------ELLLNKFY-PR---LDK-----PEGQHVVER-YLALLED------LGLYPPPE------ 152 (334)
T ss_pred ---------------------hHHHHHhh-hc---cCc-----ccchhHHHH-HHHHHHH------hcCCCCCC------
Confidence 00111111 00 000 000001110 1111111 01000000
Q ss_pred cCcccccccccccchhHHHHHhhcCCCCceEEEEec-ccc---cCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhh
Q 012412 251 EDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYG-SFV---ELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKF 326 (464)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~G-s~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 326 (464)
+. ....... ...+...-+... +++.|.++.| +.. ..+.+.+.++++.+.+.+.++++..+. ......+++
T Consensus 153 ~~---~~~~~~~-~~~~~~~~~~~~-~~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~-~e~e~~~~i 226 (334)
T COG0859 153 PQ---LDFPLPR-PPIELAKNLAKF-DRPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGP-DEEERAEEI 226 (334)
T ss_pred Cc---cCccccc-CHHHHHHHHHhc-CCCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecCh-HHHHHHHHH
Confidence 00 0000000 012222222221 1578999999 442 578999999999999888665555444 333333334
Q ss_pred hhhccCCCcEEEEec--cChH-HhhccccccceeccCChhHHHHHHHhCCcEec
Q 012412 327 SDETLTSHKSLVVSW--CPQL-EVLAHEATGCFVTHCGWNSTMEALSLGVPMVA 377 (464)
Q Consensus 327 ~~~~~~~~nv~~~~~--~p~~-~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~ 377 (464)
.+. .+..+.+.+- +.+. .++++|++ ||+. -.|-++=|.+.|+|.|.
T Consensus 227 ~~~--~~~~~~l~~k~sL~e~~~li~~a~l--~I~~-DSg~~HlAaA~~~P~I~ 275 (334)
T COG0859 227 AKG--LPNAVILAGKTSLEELAALIAGADL--VIGN-DSGPMHLAAALGTPTIA 275 (334)
T ss_pred HHh--cCCccccCCCCCHHHHHHHHhcCCE--EEcc-CChHHHHHHHcCCCEEE
Confidence 333 2222224433 3333 88889998 8876 78899999999999998
No 138
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.29 E-value=0.14 Score=47.07 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=70.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc--cccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF--FYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (464)
|||.| -.+..-|+.-+..+-++|.++||+|.+-+-+. ..+.+. ..|+.+..+...... ++.+.+..
T Consensus 1 mkVwi-DI~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd----~ygf~~~~Igk~g~~-------tl~~Kl~~ 68 (346)
T COG1817 1 MKVWI-DIGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLD----LYGFPYKSIGKHGGV-------TLKEKLLE 68 (346)
T ss_pred CeEEE-EcCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHH----HhCCCeEeecccCCc-------cHHHHHHH
Confidence 35554 22333577788999999999999998888643 223333 668888888754322 22211111
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecch
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~ 144 (464)
..... ..+.++ ..+.+| |+.+. -..+-+..+|.-+|+|.+++.-+.
T Consensus 69 ~~eR~-~~L~ki----~~~~kp-dv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 69 SAERV-YKLSKI----IAEFKP-DVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHH-HHHHHH----HhhcCC-ceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 11110 113333 333356 99999 567789999999999999986654
No 139
>PRK14098 glycogen synthase; Provisional
Probab=97.28 E-value=0.0075 Score=61.13 Aligned_cols=133 Identities=18% Similarity=0.105 Sum_probs=80.4
Q ss_pred CceEEEEeccccc-CCHHHHHHHHHHHhhCCCeEEEEEcCccc-CcCChhhhhhccCCCcEEEEeccChH---Hhhcccc
Q 012412 278 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQ-AKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEA 352 (464)
Q Consensus 278 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~ 352 (464)
+.++++..|.+.. -..+.+-..+..+.+.+.++++.-.+... ...-.++.++ .+++|.+.++++.. .+++.+|
T Consensus 306 ~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~--~~~~V~~~g~~~~~~~~~~~a~aD 383 (489)
T PRK14098 306 ETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEE--HPEQVSVQTEFTDAFFHLAIAGLD 383 (489)
T ss_pred CCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHH--CCCCEEEEEecCHHHHHHHHHhCC
Confidence 3457777787762 23344433333343346666655433210 0111222233 46789999888864 7899999
Q ss_pred ccceeccC---Ch-hHHHHHHHhCCcEeccCCcc--chhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHh
Q 012412 353 TGCFVTHC---GW-NSTMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEIL 417 (464)
Q Consensus 353 ~~~vI~Hg---G~-~s~~eal~~GvP~v~~P~~~--DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll 417 (464)
+ ++.-. |+ .+.+||+++|+|.|+....+ |.-. ...++. +.|...+..++++|.++|.+++
T Consensus 384 i--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 384 M--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred E--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEeCCCCHHHHHHHHHHHH
Confidence 9 77432 33 36789999999888765432 2211 011235 6788887778999999999876
No 140
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.22 E-value=0.00061 Score=51.85 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=52.0
Q ss_pred hHHHHHhhcCCCCceEEEEecccccC---C--HHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEE
Q 012412 266 EACMKWLNDRAKESVVYVSYGSFVEL---K--AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSL 337 (464)
Q Consensus 266 ~~~~~~l~~~~~~~~v~vs~Gs~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~ 337 (464)
..+..|+...+++|.|++|+||.... . ...+..++++++.+|..+|++++....+.+.+ +|+||+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~-------lP~nVR 97 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGE-------LPDNVR 97 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS--------TTTEE
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCC-------CCCCCC
Confidence 45566888888999999999998742 2 25889999999999999999998876665644 888886
No 141
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.93 E-value=0.056 Score=50.48 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=65.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCcccccccccCCCCCCce-EEEccCCCCCCCCCCccCHHHHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTLVTTRFFYKSLHRDSSSSSIP-LEAISDGYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (464)
|||++...+.|++.-+.++.++|+++. .+|++++.+...+.+.. ...+. ++.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~---~p~id~v~~~~~~~------~~~~~------ 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL---MPEVDRVIVLPKKH------GKLGL------ 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc---CCccCEEEEcCCcc------cccch------
Confidence 689999999999999999999999974 89999999988777762 12222 12222110 00011
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEE
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAP 139 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~ 139 (464)
.....++.++.. +.+|+++.-........++...+++..+
T Consensus 66 ------~~~~~~~~~l~~--~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 ------GARRRLARALRR--RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ------HHHHHHHHHHhh--cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 123344455544 3589999865554455566666766543
No 142
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.64 E-value=0.02 Score=47.05 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=64.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 94 (464)
|||+++.....| ...+++.|.++||+|++++.....+... ...++.+..++... .....++. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~---~~~~i~~~~~~~~~--------k~~~~~~~-~-- 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYE---IIEGIKVIRLPSPR--------KSPLNYIK-Y-- 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhh---HhCCeEEEEecCCC--------CccHHHHH-H--
Confidence 578777776666 5677999999999999999965542222 25678888885221 11222221 1
Q ss_pred hCcHHHHHHHHHhcCCCCCccEEEeCCchh---hHHHHHHHcC-CccEEEec
Q 012412 95 IGPQTLTELVEKMNGSDSPVDCIVYDSILL---WALDVAKKFG-LLGAPFLT 142 (464)
Q Consensus 95 ~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~---~~~~~A~~~g-iP~v~~~~ 142 (464)
..+..++++. +| |+|.+..... .+..++...+ +|.+...+
T Consensus 64 ---~~l~k~ik~~----~~-DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 64 ---FRLRKIIKKE----KP-DVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred ---HHHHHHhccC----CC-CEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1233333332 45 9998876543 2455678888 88886444
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.49 E-value=0.27 Score=46.49 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=39.0
Q ss_pred ChHHhhccccccceeccC-ChhHHHHHHHhCCcEeccCCccchhh----HHHHHHhHhcceeecc
Q 012412 343 PQLEVLAHEATGCFVTHC-GWNSTMEALSLGVPMVAMPQWSDQST----NAKYILDVWKTGLKFP 402 (464)
Q Consensus 343 p~~~ll~~~~~~~vI~Hg-G~~s~~eal~~GvP~v~~P~~~DQ~~----na~rl~~~~G~g~~l~ 402 (464)
|+..+|+.+|. +|.-+ ..+-+.||+..|+|+.++|... +.. -.+.+++. |+-..+.
T Consensus 221 Py~~~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECC
Confidence 67788998887 55554 4577899999999999999876 333 23334444 5555443
No 144
>PHA01630 putative group 1 glycosyl transferase
Probab=96.26 E-value=0.14 Score=49.00 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=53.1
Q ss_pred eccChH---Hhhcccccccee--cc-CC-hhHHHHHHHhCCcEeccCCcc--chhh---HHHHHHh-----------Hhc
Q 012412 340 SWCPQL---EVLAHEATGCFV--TH-CG-WNSTMEALSLGVPMVAMPQWS--DQST---NAKYILD-----------VWK 396 (464)
Q Consensus 340 ~~~p~~---~ll~~~~~~~vI--~H-gG-~~s~~eal~~GvP~v~~P~~~--DQ~~---na~rl~~-----------~~G 396 (464)
.++|+. .+++.+|+ +| ++ .| ..++.||+++|+|+|+.-..+ |.-. |+-.++. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 447755 67999999 66 33 33 457899999999999966432 3211 1111100 1 2
Q ss_pred ceeeccCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 012412 397 TGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRK 434 (464)
Q Consensus 397 ~g~~l~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~ 434 (464)
+|..++ .+.+++.+++.++|.|++-+..+++.+.-+.
T Consensus 273 ~G~~v~-~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~ 309 (331)
T PHA01630 273 VGYFLD-PDIEDAYQKLLEALANWTPEKKKENLEGRAI 309 (331)
T ss_pred cccccC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 454443 3678888888888876311144444444333
No 145
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.23 E-value=0.041 Score=41.58 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=53.3
Q ss_pred cCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 012412 359 HCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLAKE 438 (464)
Q Consensus 359 HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~ 438 (464)
+|-..-+.|++++|+|+|.-+. ......+... --++.. . +.+++.+++..+++|+ +..++.+++..+.+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~-~~~~~~-~-~~~el~~~i~~ll~~~--~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDG-EHIITY-N-DPEELAEKIEYLLENP--EERRRIAKNARERVLK 79 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCC-CeEEEE-C-CHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHH
Confidence 4455688999999999997653 3333333222 133333 3 8999999999999997 2444444444445543
Q ss_pred HHHcCCCcHHHHHHHH
Q 012412 439 AVAKGGSSDSNIDEFV 454 (464)
Q Consensus 439 ~~~~gg~~~~~~~~~~ 454 (464)
.-+....+++++
T Consensus 80 ----~~t~~~~~~~il 91 (92)
T PF13524_consen 80 ----RHTWEHRAEQIL 91 (92)
T ss_pred ----hCCHHHHHHHHH
Confidence 466666666665
No 146
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=96.13 E-value=0.052 Score=47.44 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=67.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCC-CCCceEEEccCCCCC---CCCCCccCHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSS-SSSIPLEAISDGYDE---GGYAQAESIEAYL 89 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~---~~~~~~~~~~~~~ 89 (464)
||||+..--|. +---+.+|+++|.+.||+|+++.+...++-.-+..+ ...++......+... ..+.-..++..-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 68888887776 666788999999878899999999887766543211 233444333211111 0111222332222
Q ss_pred HHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCc-------------hhhHHHHHHHcCCccEEEecch
Q 012412 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~~~ 144 (464)
. --+..+... .++|+||+..- +..++.-|...|||.|.+|...
T Consensus 80 ~-----------~al~~~~~~-~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 80 K-----------LALDGLLPD-KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp H-----------HHHHCTSTT-SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred H-----------HHHHhhhcc-CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 1 122333322 22599997541 1335666788999999987765
No 147
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=96.03 E-value=0.26 Score=49.43 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred EEeccChH---Hhhccccccceec---cCChh-HHHHHHHhCCc----EeccCCccchhhHHHHHHhHhcceeeccCcCH
Q 012412 338 VVSWCPQL---EVLAHEATGCFVT---HCGWN-STMEALSLGVP----MVAMPQWSDQSTNAKYILDVWKTGLKFPIVKR 406 (464)
Q Consensus 338 ~~~~~p~~---~ll~~~~~~~vI~---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~ 406 (464)
+.+.+++. .++..+|+ ++. +-|+| ++.||+++|+| +|+.-..+ .+. .+ +-|+.++..+.
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~---~l-~~gllVnP~d~ 409 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQ---EL-NGALLVNPYDI 409 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChH---Hh-CCcEEECCCCH
Confidence 34566666 66889999 774 44654 77899999999 66554433 222 23 44667776789
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012412 407 DAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLA 458 (464)
Q Consensus 407 ~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~ 458 (464)
++++++|.++|+.+. ++-+++.+++.+.+.. -+...-++++++.|.
T Consensus 410 ~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 410 DGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 999999999998642 2455566666666552 556666777777663
No 148
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=95.82 E-value=1.9 Score=41.46 Aligned_cols=48 Identities=27% Similarity=0.263 Sum_probs=38.1
Q ss_pred cEEEEeccChH---HhhccccccceeccCChhHHHHHHHhCCcEec--cCCccchhhHHH
Q 012412 335 KSLVVSWCPQL---EVLAHEATGCFVTHCGWNSTMEALSLGVPMVA--MPQWSDQSTNAK 389 (464)
Q Consensus 335 nv~~~~~~p~~---~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~--~P~~~DQ~~na~ 389 (464)
.+.+.+|+||. .||-.||+ -+-. |=-|+.-|..+|+|.|= .| |.++|.
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~--NfVR-GEDSfVRAqwAgkPFvWhIYp----Q~d~aH 297 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDF--NFVR-GEDSFVRAQWAGKPFVWHIYP----QEDDAH 297 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCcc--ceEe-cchHHHHHHHhCCCceEecCc----CchhhH
Confidence 34556999987 89999998 6666 66799999999999983 66 666665
No 149
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=95.66 E-value=0.16 Score=51.17 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=65.0
Q ss_pred EEEeccChH---Hhhccccccceec---cCChh-HHHHHHHhCCc----EeccCCccchhhHHHHHHhHhcceeeccCcC
Q 012412 337 LVVSWCPQL---EVLAHEATGCFVT---HCGWN-STMEALSLGVP----MVAMPQWSDQSTNAKYILDVWKTGLKFPIVK 405 (464)
Q Consensus 337 ~~~~~~p~~---~ll~~~~~~~vI~---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~ 405 (464)
.+.+++++. .++..+|+ +|. +-|+| ++.||+++|+| +|+.-..+ .+.- . .-|+.++..+
T Consensus 344 ~~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~~---~-~~g~lv~p~d 413 (460)
T cd03788 344 YLYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAEE---L-SGALLVNPYD 413 (460)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chhh---c-CCCEEECCCC
Confidence 344677766 67899999 773 44654 66999999999 54432222 1111 3 4466666678
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 012412 406 RDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 457 (464)
Q Consensus 406 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l 457 (464)
.++++++|.++|+++. .+-+++.++..+.+. .-+...-+++++++|
T Consensus 414 ~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 414 IDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 9999999999998751 123333333333333 245566666666655
No 150
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.63 E-value=0.038 Score=46.12 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHh
Q 012412 28 NPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKM 107 (464)
Q Consensus 28 ~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 107 (464)
.-+..|+++|.++||+|++++......... ....++.+..++..... . .......+ ..+..++ .
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~-~~~~~~~~--------~~~~~~l--~ 68 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDE--EEEDGVRVHRLPLPRRP---W-PLRLLRFL--------RRLRRLL--A 68 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-S--EEETTEEEEEE--S-SS---S-GGGHCCHH--------HHHHHHC--H
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccc--cccCCceEEeccCCccc---h-hhhhHHHH--------HHHHHHH--h
Confidence 457889999999999999999765544321 12457888877722211 0 00111111 1122222 1
Q ss_pred cCCCCCccEEEeCCch-hhHHHHHH-HcCCccEEEec
Q 012412 108 NGSDSPVDCIVYDSIL-LWALDVAK-KFGLLGAPFLT 142 (464)
Q Consensus 108 ~~~~~p~DlVI~D~~~-~~~~~~A~-~~giP~v~~~~ 142 (464)
... .++|+|.+.... .....+++ ..++|++....
T Consensus 69 ~~~-~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 69 ARR-ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HCT----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred hhc-cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 122 335999987643 22333444 88999988544
No 151
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.36 E-value=0.11 Score=52.76 Aligned_cols=92 Identities=11% Similarity=0.120 Sum_probs=69.7
Q ss_pred CcEEEEeccC--hH-HhhccccccceeccC---ChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHH
Q 012412 334 HKSLVVSWCP--QL-EVLAHEATGCFVTHC---GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRD 407 (464)
Q Consensus 334 ~nv~~~~~~p--~~-~ll~~~~~~~vI~Hg---G~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~ 407 (464)
.+|.+.++.. +. ..+..+.+ +|.=+ |.++.+||+.+|+|+| .......+++. .=|..+ -+..
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li--~d~~ 476 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII--DDIS 476 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe--CCHH
Confidence 6788889888 33 77888888 88544 7789999999999999 44456667777 777777 5789
Q ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHHHHHH
Q 012412 408 AIADCISEILEGE-RGKELRRNAGKWRKLAK 437 (464)
Q Consensus 408 ~l~~~i~~ll~~~-~~~~~~~~a~~l~~~~~ 437 (464)
+|.+++..+|.+. .+..+...+-+.+++..
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999986 24455555555555554
No 152
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.13 E-value=1.7 Score=39.09 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=29.1
Q ss_pred eccChHHhhccccccceecc-CChhHHHHHHHhCCcEec
Q 012412 340 SWCPQLEVLAHEATGCFVTH-CGWNSTMEALSLGVPMVA 377 (464)
Q Consensus 340 ~~~p~~~ll~~~~~~~vI~H-gG~~s~~eal~~GvP~v~ 377 (464)
++=|+-+.|+.++. +|+- -..+-++||++.|+|+.+
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~ 270 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFI 270 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEE
Confidence 45588999998887 6654 456888999999999976
No 153
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.27 E-value=1.6 Score=41.13 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=57.0
Q ss_pred CCcEEEEeccCh---HHhhccccccceecc---CChhH-HHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcC
Q 012412 333 SHKSLVVSWCPQ---LEVLAHEATGCFVTH---CGWNS-TMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVK 405 (464)
Q Consensus 333 ~~nv~~~~~~p~---~~ll~~~~~~~vI~H---gG~~s-~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~ 405 (464)
.+++.+.++++. ..++..+++ ++.- .|.|. +.||+++|+|++... .......+.+. +.|......+
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~~-~~g~~~~~~~ 328 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVEDG-ETGLLVPPGD 328 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcCC-CceEecCCCC
Confidence 478888999992 266777887 6655 35544 599999999997654 44444444444 4466333337
Q ss_pred HHHHHHHHHHHhcCC
Q 012412 406 RDAIADCISEILEGE 420 (464)
Q Consensus 406 ~~~l~~~i~~ll~~~ 420 (464)
.+.+..++..++++.
T Consensus 329 ~~~~~~~i~~~~~~~ 343 (381)
T COG0438 329 VEELADALEQLLEDP 343 (381)
T ss_pred HHHHHHHHHHHhcCH
Confidence 899999999999885
No 154
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.98 E-value=0.38 Score=44.60 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=62.4
Q ss_pred CCCceEEEEeccccc-------CC-HHHHHHHHHHHhhC-CCeEEEEEcCcccCcCChhhhhhc-cCCCcEEEEeccChH
Q 012412 276 AKESVVYVSYGSFVE-------LK-AEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDET-LTSHKSLVVSWCPQL 345 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~-------~~-~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~nv~~~~~~p~~ 345 (464)
.+++.|++.+-.... .. ....+.+....+.. +.+++++.++........++.+.. .....+.+.+-++-.
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLY 194 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHH
Confidence 355677776644331 11 23333344444444 678899888743332222322221 122334445678888
Q ss_pred HhhccccccceeccCChhHHHHHHHhCCcEeccCC
Q 012412 346 EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQ 380 (464)
Q Consensus 346 ~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~ 380 (464)
+|+.+|+. |||-. .++-.||+.+|+|++++..
T Consensus 195 ~Ll~~s~~--Vvtin-StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 195 ELLEQSDA--VVTIN-STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred HHHHhCCE--EEEEC-CHHHHHHHHcCCceEEecC
Confidence 99999999 99884 4577999999999998663
No 155
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.59 E-value=0.58 Score=39.91 Aligned_cols=115 Identities=22% Similarity=0.181 Sum_probs=59.7
Q ss_pred EEEcCCCccChHHHHHHHHHH-HhC-CCeEEEEeCccccccc-----ccCCCCCCceEEEccCCCCCCCCCCccCHHHHH
Q 012412 17 LVLTYPGQGHINPLLQFSRRL-QHK-GIKVTLVTTRFFYKSL-----HRDSSSSSIPLEAISDGYDEGGYAQAESIEAYL 89 (464)
Q Consensus 17 l~~~~~~~GH~~p~l~la~~L-~~r-Gh~V~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (464)
+++. ++.||+.-++.|.+.+ .++ .++..+++........ ++.. .....+..+|..... .-....++...+
T Consensus 2 l~v~-gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~-~~~~~~~~~~r~r~v-~q~~~~~~~~~l 78 (170)
T PF08660_consen 2 LVVL-GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS-SKRHKILEIPRAREV-GQSYLTSIFTTL 78 (170)
T ss_pred EEEE-cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc-cccceeeccceEEEe-chhhHhhHHHHH
Confidence 3443 4559999999999999 333 5666666665443332 1000 111134444422111 001111122222
Q ss_pred HHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCch--hhHHHHHHHc------CCccEEEecch
Q 012412 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKF------GLLGAPFLTQS 144 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~--~~~~~~A~~~------giP~v~~~~~~ 144 (464)
..+. ..+.-+.+. +| |+||++.-- ...+.+|..+ |.+.|.+.+..
T Consensus 79 ~~~~----~~~~il~r~-----rP-dvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 79 RAFL----QSLRILRRE-----RP-DVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHH----HHHHHHHHh-----CC-CEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 2222 122222222 56 999998644 4467788888 99999876654
No 156
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.50 E-value=0.63 Score=50.15 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=68.0
Q ss_pred eccChH---Hhhccccccceec---cCChh-HHHHHHHhCCc---EeccCCccchhhHHHHHHhHhc-ceeeccCcCHHH
Q 012412 340 SWCPQL---EVLAHEATGCFVT---HCGWN-STMEALSLGVP---MVAMPQWSDQSTNAKYILDVWK-TGLKFPIVKRDA 408 (464)
Q Consensus 340 ~~~p~~---~ll~~~~~~~vI~---HgG~~-s~~eal~~GvP---~v~~P~~~DQ~~na~rl~~~~G-~g~~l~~~~~~~ 408 (464)
.++|.. .++..+|+ ++. .-|+| ++.|++++|+| +++++-+ ...+.- + | .|+.++..+.++
T Consensus 362 ~~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~~---l-~~~allVnP~D~~~ 432 (797)
T PLN03063 362 CSVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQS---L-GAGALLVNPWNITE 432 (797)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchhh---h-cCCeEEECCCCHHH
Confidence 345544 78889999 774 44776 56899999999 4444422 122222 3 4 477777789999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 012412 409 IADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 460 (464)
Q Consensus 409 l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 460 (464)
++++|.++|..+. ++-+++.+++.+.++. -+...-.+++++.|...
T Consensus 433 lA~AI~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 433 VSSAIKEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHHHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 9999999998431 1444555556665553 34455566667766554
No 157
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=93.50 E-value=1.7 Score=39.27 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=66.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCC-CCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
||||+..--| =|---+.+|+++|. .+++|+++.+...++-..++. ....++...+... .+....++..-
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~----~~av~GTPaDC---- 70 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNG----AYAVNGTPADC---- 70 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEeccc----eEEecCChHHH----
Confidence 5677665554 46667788899998 999999999998877665331 2333444444421 11111222211
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCCc-------------hhhHHHHHHHcCCccEEEecch
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~~~ 144 (464)
+.--+..+..+..| |+||+..- +..+++=|..+|||.|.+|...
T Consensus 71 -------V~lal~~l~~~~~p-DLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 71 -------VILGLNELLKEPRP-DLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred -------HHHHHHHhccCCCC-CEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 11223344433235 99997542 2345555789999999987764
No 158
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=93.47 E-value=1.2 Score=44.30 Aligned_cols=140 Identities=12% Similarity=0.157 Sum_probs=87.2
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCC-CeEEEEEcCcccCcCChhhhhhccCCCcEEEE-eccChH--Hhhcccc
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKSSD-QHFLWVVRESEQAKLPKKFSDETLTSHKSLVV-SWCPQL--EVLAHEA 352 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~~p~~--~ll~~~~ 352 (464)
...++.+| +.+.+..+....++++ ..|-+..+.. ..+.+.+. ..-+|+.+. ++.++. +++..|+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----~s~kL~~L-~~y~nvvly~~~~~~~l~~ly~~~d 349 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----MSSKLMSL-DKYDNVKLYPNITTQKIQELYQTCD 349 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----ccHHHHHH-HhcCCcEEECCcChHHHHHHHHhcc
Confidence 34466665 2566666666666654 4655533322 11222221 122777776 567733 9999999
Q ss_pred ccceeccCC--hhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCchHHHHHHHH
Q 012412 353 TGCFVTHCG--WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNAG 430 (464)
Q Consensus 353 ~~~vI~HgG--~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~~~~~~~~a~ 430 (464)
+=+-|+||+ ..++.||+.+|+|++..=..... ...+.. |...+.-+.+++.++|.++|.++ +.++++..
T Consensus 350 lyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~~----g~l~~~~~~~~m~~~i~~lL~d~--~~~~~~~~ 420 (438)
T TIGR02919 350 IYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIAS----ENIFEHNEVDQLISKLKDLLNDP--NQFRELLE 420 (438)
T ss_pred EEEEccccccHHHHHHHHHHcCCcEEEEecccCC---cccccC----CceecCCCHHHHHHHHHHHhcCH--HHHHHHHH
Confidence 988889876 47899999999999975533211 111111 33344567899999999999997 35666665
Q ss_pred HHHHHHH
Q 012412 431 KWRKLAK 437 (464)
Q Consensus 431 ~l~~~~~ 437 (464)
+-++.+.
T Consensus 421 ~q~~~a~ 427 (438)
T TIGR02919 421 QQREHAN 427 (438)
T ss_pred HHHHHhc
Confidence 5554443
No 159
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=93.44 E-value=2.4 Score=38.65 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccC-CCCCCceEEEccCCCCCCCCCCccCHHHHHH
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRD-SSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (464)
++||||+..--|. |---+.+|+++|.+.| +|+++.+...++-.-++ .....+++..+...-....+....++..-..
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV~ 81 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCIK 81 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHHH
Confidence 4679998766654 3356888999998888 79999998766655432 1233455555431100001112222222211
Q ss_pred HHHHhCcHHHHHHHHHhcCCCCCccEEEeCCc-------------hhhHHHHHHHcCCccEEEec
Q 012412 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~ 142 (464)
--+..+... + +|+||+..- +..++.-|..+|||.|.+|.
T Consensus 82 -----------lal~~~~~~-~-pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 82 -----------VALSHILPE-K-PDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred -----------HHHHhhcCC-C-CCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 112222221 3 499997542 23455667889999999875
No 160
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=93.23 E-value=0.17 Score=49.34 Aligned_cols=141 Identities=15% Similarity=0.179 Sum_probs=79.9
Q ss_pred HHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEe-ccChHHhhccccccceeccCChhHHHHHHHhCCc
Q 012412 296 MEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS-WCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVP 374 (464)
Q Consensus 296 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~-~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP 374 (464)
...+. .+...+..+++..++........... ..+++...+ ..+..++|..+|+ +||=- .+.+.|.+..++|
T Consensus 219 ~~~l~-~~~~~~~~li~k~Hp~~~~~~~~~~~----~~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KP 290 (369)
T PF04464_consen 219 FEKLN-FLLKNNYVLIIKPHPNMKKKFKDFKE----DNSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKP 290 (369)
T ss_dssp HHHHH-HHHTTTEEEEE--SHHHHTT----TT-----TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--
T ss_pred HHHHH-HHhCCCcEEEEEeCchhhhchhhhhc----cCCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCC
Confidence 34444 66667788888876643332221111 457887764 5567799999999 99985 5688999999999
Q ss_pred EeccCCccchhhHHHHHHhHhcceeecc-------CcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcH
Q 012412 375 MVAMPQWSDQSTNAKYILDVWKTGLKFP-------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSD 447 (464)
Q Consensus 375 ~v~~P~~~DQ~~na~rl~~~~G~g~~l~-------~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 447 (464)
++......|++... . |.-.... --+.++|.++|..++.++ ..++++.++..+.+-. ..+|.+++
T Consensus 291 iify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~e 361 (369)
T PF04464_consen 291 IIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYNFEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSE 361 (369)
T ss_dssp EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESSHHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHH
T ss_pred EEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCCHHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHH
Confidence 99876555655322 2 3333321 357899999999998765 2455666666666643 23455444
Q ss_pred HHHHHH
Q 012412 448 SNIDEF 453 (464)
Q Consensus 448 ~~~~~~ 453 (464)
+.++.+
T Consensus 362 ri~~~I 367 (369)
T PF04464_consen 362 RIVNYI 367 (369)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 161
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=92.79 E-value=3.1 Score=37.87 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=62.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCC-CCCCceEEEcc-CCCCCCCCCCccCHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAIS-DGYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~ 91 (464)
||||+..--|. |---+.+|+++|.+ +|+|+++.+...++-.-++. ....+....+. ++.....+.-..++..-..
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~- 77 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVR- 77 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHH-
Confidence 57887766655 33448889999964 68999999987766544321 12334444433 1000001111122222111
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEEeCCc-------------hhhHHHHHHHcCCccEEEecc
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLTQ 143 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~~ 143 (464)
--+..+.. .++|+||+..- +..++.-|..+|||.+.+|..
T Consensus 78 ----------lal~~l~~--~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 78 ----------VALDKLVP--DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred ----------HHHHHhcC--CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 11122332 23499997542 234566678899999998753
No 162
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=92.05 E-value=4.3 Score=36.87 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=64.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccC-CCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRD-SSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
||||+..--| =|---+.+|+++|.+.| +|+++.+...+.-.-++ .....+++..++..-....+....++..-...
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~- 77 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVIL- 77 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHH-
Confidence 5777665555 34456788999999888 89999998777666532 12334555555410000011112222221111
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCCc-------------hhhHHHHHHHcCCccEEEec
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~ 142 (464)
-+..+.. .++|+||+..- +..++.-|..+|||.+.+|.
T Consensus 78 ----------gl~~l~~--~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 78 ----------GINELMP--EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred ----------HHHHhcc--CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 1122222 23499997542 23456667889999999875
No 163
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=92.03 E-value=4.3 Score=36.95 Aligned_cols=114 Identities=9% Similarity=-0.024 Sum_probs=62.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCC-CCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
||||+..--|. |---+.+|+++|++ +|+|+++.+...++-.-++. ....+.+..+...-....+....++..-...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~l- 77 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKL- 77 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHH-
Confidence 57777766664 44568889999964 68999999987766555321 1233444444310000011122222222111
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCCc-------------hhhHHHHHHHcCCccEEEec
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~ 142 (464)
-+..+... +| |+||+..- +..++.-|..+|||.|.+|.
T Consensus 78 ----------al~~~~~~-~p-DLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 78 ----------GYDVIMDK-KV-DLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred ----------HHHhhccC-CC-CEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 11222221 34 99997542 23355567889999999875
No 164
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=91.96 E-value=1.6 Score=37.20 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=51.7
Q ss_pred hCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCC-CCCC-CccCHHHHHHHHHHhCcHHHHHHHHHhcCCCCCccE
Q 012412 39 HKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDE-GGYA-QAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDC 116 (464)
Q Consensus 39 ~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~Dl 116 (464)
++||+|+|++........ .|++...+...... .+.. -..+.+..+. ... .+...+.+|.++.-.+|+
T Consensus 1 q~gh~v~fl~~~~~~~~~------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~----rg~-av~~a~~~L~~~Gf~PDv 69 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVL----RGQ-AVARAARQLRAQGFVPDV 69 (171)
T ss_pred CCCCEEEEEecCCCCCCC------CCcEEEEeCCCCCCCCCCCcccccHHHHHH----HHH-HHHHHHHHHHHcCCCCCE
Confidence 479999999954333222 47777777532211 0111 1111221111 111 233444555544444499
Q ss_pred EEeCCchhhHHHHHHHc-CCccEEEec
Q 012412 117 IVYDSILLWALDVAKKF-GLLGAPFLT 142 (464)
Q Consensus 117 VI~D~~~~~~~~~A~~~-giP~v~~~~ 142 (464)
||+...--.++-+-+.+ ++|.+.+.-
T Consensus 70 I~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 70 IIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred EEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 99997766677788888 888887543
No 165
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=91.90 E-value=1.4 Score=47.16 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=68.9
Q ss_pred EEEEeccChH---Hhhccccccceecc---CChh-HHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHH
Q 012412 336 SLVVSWCPQL---EVLAHEATGCFVTH---CGWN-STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDA 408 (464)
Q Consensus 336 v~~~~~~p~~---~ll~~~~~~~vI~H---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~ 408 (464)
+.+.+++++. .++..+|+ ++.- -|+| ++.||+++|+|-...|+..+-..- ..++ .-|+.++..+.++
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~---~~~l-~~~llv~P~d~~~ 417 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA---AAEL-AEALLVNPNDIEG 417 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccch---hHHh-CcCeEECCCCHHH
Confidence 3455788877 68889999 7743 3654 669999997752112211111111 1233 3367777778999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 012412 409 IADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 460 (464)
Q Consensus 409 l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 460 (464)
++++|.++|..+.. +-+++.+++.+.++ .-+...-++++++.+.+.
T Consensus 418 la~ai~~~l~~~~~-e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 418 IAAAIKRALEMPEE-EQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 99999999986421 34444444444443 245566677777776665
No 166
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=91.08 E-value=5.7 Score=36.41 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=63.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccC-CCCCCceEEEccC-CCCCCCCCCccCHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRD-SSSSSIPLEAISD-GYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~-~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~ 91 (464)
||||+..--|. |---+.+|+++|...| +|+++.+...++-.-++ .....++...+.. +. . .+.-..++..-...
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~-~-~y~v~GTPaDCV~l 76 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGF-K-VYATSGTPSDTIYL 76 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccccCCCCcEEEEeccCCc-c-eEEeCCCHHHHHHH
Confidence 57777666654 5567889999998887 79999988766655432 1233445544431 11 0 12222233222211
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEEeCC-----------ch---hhHHHHHHHcCCccEEEec
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDS-----------IL---LWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~-----------~~---~~~~~~A~~~giP~v~~~~ 142 (464)
-+..+ . .++|+||+.. ++ ..++.-|..+|||.|.+|.
T Consensus 77 -----------al~~l-~--~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 77 -----------ATYGL-G--RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred -----------HHHhc-c--CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 11222 1 3359999643 11 2345557889999999875
No 167
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=91.03 E-value=6.3 Score=35.90 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=63.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCC-CCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
||||+..--|. |---+.+|+++|.+. |+|+++.+...++-.-++. ....+++..+..+ .+....++..-.+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~----~~~v~GTPaDcV~-- 72 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG----FYAVDGTPTDCVH-- 72 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC----eEEECCcHHHHHH--
Confidence 57777666654 455688999999988 7999999987766555321 1233444444211 1111122221111
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCCc-------------hhhHHHHHHHcCCccEEEec
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~ 142 (464)
--++.+... + +|+||+..- +..++.-|..+|||.+.+|.
T Consensus 73 ---------~gl~~l~~~-~-pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 73 ---------LALNGLLDP-K-PDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred ---------HHHHhhccC-C-CCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 112223321 3 499997542 23456667889999999865
No 168
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.91 E-value=3.8 Score=34.43 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=25.9
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 23 GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 23 ~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
..|--.-+..|+++|+++||+|++++.........
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~ 45 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE 45 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh
Confidence 44777789999999999999999998865443333
No 169
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.87 E-value=1.3 Score=35.18 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=35.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (464)
||++.+.++-.|.....-++..|.++|++|.++......+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588899999999999999999999999999998765444333
No 170
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=90.56 E-value=0.43 Score=43.52 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=58.6
Q ss_pred CCCceEEEEecccc---cCCHHHHHHHHHHHhhCCCeEEEEEcCccc-CcCChhhhhhccCCC-cEEEEec--cCh-HHh
Q 012412 276 AKESVVYVSYGSFV---ELKAEEMEELAWGLKSSDQHFLWVVRESEQ-AKLPKKFSDETLTSH-KSLVVSW--CPQ-LEV 347 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~-nv~~~~~--~p~-~~l 347 (464)
.+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+..+. ....+.+.+. .+. .+.+.+- +.+ ..+
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAG--LQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTT--HTTTTEEETTTS-HHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHh--cccceEeecCCCCHHHHHHH
Confidence 35678888888865 568999999999999888776665554431 1111122111 122 3344332 233 388
Q ss_pred hccccccceeccCChhHHHHHHHhCCcEecc
Q 012412 348 LAHEATGCFVTHCGWNSTMEALSLGVPMVAM 378 (464)
Q Consensus 348 l~~~~~~~vI~HgG~~s~~eal~~GvP~v~~ 378 (464)
+.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 181 i~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 181 ISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 999999 9987 778999999999999986
No 171
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.12 E-value=1.2 Score=36.44 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=45.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
++.+|++.+.++-+|-.-..-++..|.++|++|+++......+.+.+.....+..++.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 456899999999999999999999999999999999987665555422123344444444
No 172
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=90.07 E-value=0.91 Score=46.21 Aligned_cols=73 Identities=11% Similarity=0.045 Sum_probs=47.6
Q ss_pred ChHHhhccccccceec---cCCh-hHHHHHHHhCCcEeccCCcc-chhhHHHHHHhHhc--ceeecc-------CcCHHH
Q 012412 343 PQLEVLAHEATGCFVT---HCGW-NSTMEALSLGVPMVAMPQWS-DQSTNAKYILDVWK--TGLKFP-------IVKRDA 408 (464)
Q Consensus 343 p~~~ll~~~~~~~vI~---HgG~-~s~~eal~~GvP~v~~P~~~-DQ~~na~rl~~~~G--~g~~l~-------~~~~~~ 408 (464)
++.+++..|++ +|. +=|+ -++.||+++|+|+|+....+ ..... .+... + .|+.+. ..+.++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~--E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME--EHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH--HHhcc-CCCceEEEecCCccchHHHHHH
Confidence 56789999999 664 4555 48899999999999876533 11111 12111 1 455553 345688
Q ss_pred HHHHHHHHhcCC
Q 012412 409 IADCISEILEGE 420 (464)
Q Consensus 409 l~~~i~~ll~~~ 420 (464)
|++++.+++..+
T Consensus 542 La~~m~~~~~~~ 553 (590)
T cd03793 542 LTQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHHhCCc
Confidence 888888888654
No 173
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.85 E-value=2.5 Score=40.08 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=33.8
Q ss_pred cEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 012412 14 AHCLVLT-YPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (464)
Q Consensus 14 ~~il~~~-~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (464)
+||+|++ -||-|-..-.-++|-.|++.|.+|.+++++......
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~ 45 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLG 45 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchH
Confidence 5777554 456699888899999999999999999887655443
No 174
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=89.76 E-value=0.36 Score=45.55 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=32.8
Q ss_pred cEEEE-EcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccc
Q 012412 14 AHCLV-LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (464)
Q Consensus 14 ~~il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (464)
||++| .--||-|-..-..++|-.++++|++|.+++++....
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 46664 556677999999999999999999999999987654
No 175
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.45 E-value=3.9 Score=37.33 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=36.8
Q ss_pred cEEEEeccChH---HhhccccccceeccCChhHHHHHHHhCCcEec--cCCccchhhHHH
Q 012412 335 KSLVVSWCPQL---EVLAHEATGCFVTHCGWNSTMEALSLGVPMVA--MPQWSDQSTNAK 389 (464)
Q Consensus 335 nv~~~~~~p~~---~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~--~P~~~DQ~~na~ 389 (464)
++...+|+||+ .||..||+ -+-. |--|+.-|..+|+|.+= .| |..|+.
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflWHIYp----QdentH 291 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLWHIYP----QDENTH 291 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEEEecC----CccccH
Confidence 45556899987 88999998 4545 67799999999999973 66 555554
No 176
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.26 E-value=2.4 Score=39.10 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=60.4
Q ss_pred CcEEEE-eccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhh--HHHHHHhHhcceeeccCcCHHHHH
Q 012412 334 HKSLVV-SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQST--NAKYILDVWKTGLKFPIVKRDAIA 410 (464)
Q Consensus 334 ~nv~~~-~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~--na~rl~~~~G~g~~l~~~~~~~l~ 410 (464)
+|-.+. .|-.+.++|.++++ .|--.|-- +-+++-.|||+|.+|-.+-|+. .|.|=.+++|+++.+-+-.+..-.
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAGTA-tEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~ 370 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAGTA-TEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAA 370 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhccch-HHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHH
Confidence 454443 55566677777777 66554432 2346789999999999998865 666666666888777644455555
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 012412 411 DCISEILEGERGKELRRNAG 430 (464)
Q Consensus 411 ~~i~~ll~~~~~~~~~~~a~ 430 (464)
.+..++|.|+ ++.+.++
T Consensus 371 ~~~q~ll~dp---~r~~air 387 (412)
T COG4370 371 QAVQELLGDP---QRLTAIR 387 (412)
T ss_pred HHHHHHhcCh---HHHHHHH
Confidence 5566699997 5555444
No 177
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=89.25 E-value=3.6 Score=37.67 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=27.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (464)
|+|+++...+. -..|++.|.++||+|+..+........
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~ 38 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHL 38 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCcccc
Confidence 46777654443 578999999999999988876654433
No 178
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=21 Score=33.84 Aligned_cols=146 Identities=17% Similarity=0.266 Sum_probs=86.1
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhC---------CC-eEEEEEcCcccCcCChhhhhhcc--CCCcEEEE-ecc
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKSS---------DQ-HFLWVVRESEQAKLPKKFSDETL--TSHKSLVV-SWC 342 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~---------~~-~~i~~~~~~~~~~~~~~~~~~~~--~~~nv~~~-~~~ 342 (464)
+.+|.++||.-|-. +.+.+..+++|+... +. .++..+.+. .++.+.+.+..- .-.+|.+. .|.
T Consensus 252 ~~~pallvsSTswT--pDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGK--GPlkE~Y~~~I~~~~~~~v~~~tpWL 327 (444)
T KOG2941|consen 252 PERPALLVSSTSWT--PDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGK--GPLKEKYSQEIHEKNLQHVQVCTPWL 327 (444)
T ss_pred cCCCeEEEecCCCC--CcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCC--CchhHHHHHHHHHhcccceeeeeccc
Confidence 45677888754433 566777777777621 22 333333332 344554433210 22466554 786
Q ss_pred C---hHHhhccccccceeccCChh-----HHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHH
Q 012412 343 P---QLEVLAHEATGCFVTHCGWN-----STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCIS 414 (464)
Q Consensus 343 p---~~~ll~~~~~~~vI~HgG~~-----s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~ 414 (464)
. +-.+|+.+|++...|-...| -+..-.-+|+|+..+-+.- --..|++- .-|+.. -+.++|++.+.
T Consensus 328 ~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkc----l~ELVkh~-eNGlvF--~Ds~eLa~ql~ 400 (444)
T KOG2941|consen 328 EAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKC----LDELVKHG-ENGLVF--EDSEELAEQLQ 400 (444)
T ss_pred ccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchh----HHHHHhcC-CCceEe--ccHHHHHHHHH
Confidence 4 55899999998888766655 3566677888887654321 12233344 445555 47899999999
Q ss_pred HHhcC----Cc-hHHHHHHHHHH
Q 012412 415 EILEG----ER-GKELRRNAGKW 432 (464)
Q Consensus 415 ~ll~~----~~-~~~~~~~a~~l 432 (464)
-++.| .+ -.++|+|+++-
T Consensus 401 ~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 401 MLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred HHHhcCCCCHHHHHHHHHhhHHH
Confidence 99873 11 13566666554
No 179
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.10 E-value=0.89 Score=37.89 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccC
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISD 72 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 72 (464)
.+|||.+.-.||-|-..-++.+++.|.++|++|-=+-++.-.+--. ..||..+.+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGk----R~GF~Ivdl~t 60 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGK----RIGFKIVDLAT 60 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCe----EeeeEEEEccC
Confidence 3689999999999999999999999999999997555544443333 45677777653
No 180
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=86.96 E-value=14 Score=37.41 Aligned_cols=109 Identities=15% Similarity=0.044 Sum_probs=73.7
Q ss_pred EEEEeccChH---Hhhcccccccee---ccCChhHH-HHHHHhCC----cEeccCCccchhhHHHHHHhHhcceeeccCc
Q 012412 336 SLVVSWCPQL---EVLAHEATGCFV---THCGWNST-MEALSLGV----PMVAMPQWSDQSTNAKYILDVWKTGLKFPIV 404 (464)
Q Consensus 336 v~~~~~~p~~---~ll~~~~~~~vI---~HgG~~s~-~eal~~Gv----P~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~ 404 (464)
+.+.+.+|+. .++..+|+ ++ ..-|+|.+ .|.++++. |+|+--+.+ |. +.+ .-++.+...
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~l-~~AllVNP~ 433 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VEL-KGALLTNPY 433 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hhc-CCCEEECCC
Confidence 4666888877 57778888 55 35689866 69999988 555433221 11 444 557777788
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 012412 405 KRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 460 (464)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 460 (464)
+.++++++|.++|..+.. +=+++.+++.+.++. -....=.+.+++.|...
T Consensus 434 d~~~~A~ai~~AL~m~~~-Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 434 DPVRMDETIYVALAMPKA-EQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred CHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 999999999999988532 335555666665553 34455677777777654
No 181
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=86.95 E-value=14 Score=30.62 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=72.3
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceec
Q 012412 279 SVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVT 358 (464)
Q Consensus 279 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~ 358 (464)
|.|.|-+||.. +....+++...|++++..+-+.+.+. ...++.+.+ ++...+- ..+++ ||.
T Consensus 1 p~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--HR~p~~l~~------------~~~~~~~-~~~~v--iIa 61 (150)
T PF00731_consen 1 PKVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--HRTPERLLE------------FVKEYEA-RGADV--IIA 61 (150)
T ss_dssp -EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--TTSHHHHHH------------HHHHTTT-TTESE--EEE
T ss_pred CeEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--cCCHHHHHH------------HHHHhcc-CCCEE--EEE
Confidence 34677777766 67889999999999998776666553 222333221 1111110 23556 887
Q ss_pred cCChh----HHHHHHHhCCcEeccCCccchhhHHHH---HHhH-hcceeeccCc-CHHHHHHHHHHHh--cCCchHHHHH
Q 012412 359 HCGWN----STMEALSLGVPMVAMPQWSDQSTNAKY---ILDV-WKTGLKFPIV-KRDAIADCISEIL--EGERGKELRR 427 (464)
Q Consensus 359 HgG~~----s~~eal~~GvP~v~~P~~~DQ~~na~r---l~~~-~G~g~~l~~~-~~~~l~~~i~~ll--~~~~~~~~~~ 427 (464)
=.|.. ++.-++ .-+|++.+|....+.....- +.++ -|+++..-.. +...-+-.--++| .|+ ++++
T Consensus 62 ~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~---~l~~ 137 (150)
T PF00731_consen 62 VAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDP---ELRE 137 (150)
T ss_dssp EEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-H---HHHH
T ss_pred ECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCH---HHHH
Confidence 76643 444444 38999999988765543332 2222 2454333211 3333333334444 454 8888
Q ss_pred HHHHHHHHHHH
Q 012412 428 NAGKWRKLAKE 438 (464)
Q Consensus 428 ~a~~l~~~~~~ 438 (464)
+.+..++.+++
T Consensus 138 kl~~~~~~~~~ 148 (150)
T PF00731_consen 138 KLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888887775
No 182
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=86.57 E-value=1.3 Score=35.11 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=27.5
Q ss_pred cEEEEEcCCCcc---ChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 14 AHCLVLTYPGQG---HINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 14 ~~il~~~~~~~G---H~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
|||+|+.-+-.+ .-.-.++|+.+-++|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 588887776544 446789999999999999999998654
No 183
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=86.52 E-value=21 Score=32.78 Aligned_cols=112 Identities=12% Similarity=0.033 Sum_probs=61.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhC---CCeEEEEeCcccccccccCC-CCCCceEEEccCCCCCCCCCCccCHHHHH
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHK---GIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDEGGYAQAESIEAYL 89 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~r---Gh~V~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (464)
||||+..--|. |---+.+|+++|.+. |++|+++.+...++-.-++. ....+++..+..+ .+.-..++..-.
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~----~yav~GTPaDCV 75 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPR----RFAAEGSPADCV 75 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCC----eEEEcCchHHHH
Confidence 46666554442 344567777877663 47999999987766555331 2334555554321 112222222211
Q ss_pred HHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCc----------h---hhHHHHHHHcCCccEEEec
Q 012412 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSI----------L---LWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~----------~---~~~~~~A~~~giP~v~~~~ 142 (464)
.. -+..+... .++|+||+..- + ..++.-|..+|||.+.+|.
T Consensus 76 ~l-----------al~~~~~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 76 LA-----------ALYDVMKD-APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HH-----------HHHHhcCC-CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 11 11222221 23499997542 2 3355667889999999875
No 184
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.07 E-value=18 Score=34.41 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=60.5
Q ss_pred CcEEEE-eccChH---Hhhccccccceecc--CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc--CcC
Q 012412 334 HKSLVV-SWCPQL---EVLAHEATGCFVTH--CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVK 405 (464)
Q Consensus 334 ~nv~~~-~~~p~~---~ll~~~~~~~vI~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~--~~~ 405 (464)
+|+.+. +++|.. .+|..||++-|+|. =|.|++.-.|..|+|+++-- +.---+-+.+. |+-+... +++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~----~np~~~~l~~~-~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR----DNPFWQDLKEQ-GIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec----CChHHHHHHhC-CCeEEeccccCC
Confidence 578654 788855 88999999655554 48999999999999998743 44444557777 7766554 899
Q ss_pred HHHHHHHHHHHhc
Q 012412 406 RDAIADCISEILE 418 (464)
Q Consensus 406 ~~~l~~~i~~ll~ 418 (464)
...++++=+.+..
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988887763
No 185
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=84.54 E-value=4.6 Score=35.27 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=62.5
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCccccccccc-CCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHH
Q 012412 25 GHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHR-DSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTEL 103 (464)
Q Consensus 25 GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (464)
-++.....+.+.+..+|-+|.|+++......+.+ .....+-.+. ...|....+++..........+.......++..
T Consensus 40 ~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i--~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~ 117 (193)
T cd01425 40 EKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYV--NGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKN 117 (193)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeee--cCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666777888999999999854443331 1111122222 222433234444444333333322211223333
Q ss_pred HHHhcCCCCCccEEEe-CCch-hhHHHHHHHcCCccEEEecch
Q 012412 104 VEKMNGSDSPVDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 104 ~~~l~~~~~p~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (464)
+..+....+.||+||. |+.. ..+..=|..+|||+|.+.-+.
T Consensus 118 ~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 118 LGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 3333322344599887 5443 556777999999999986654
No 186
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=84.46 E-value=15 Score=34.42 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=55.2
Q ss_pred CcEEEE-eccChH---Hhhccccccceecc--CChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc--CcC
Q 012412 334 HKSLVV-SWCPQL---EVLAHEATGCFVTH--CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVK 405 (464)
Q Consensus 334 ~nv~~~-~~~p~~---~ll~~~~~~~vI~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~--~~~ 405 (464)
+|+.+. +++|.. ++|.+||++-|+|+ =|.||++-.+..|+|+++-.. -+.+. -+.+. |+-+..+ .++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwq-dl~e~-gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQ-DLTEQ-GLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHH-HHHhC-CCeEEecCCccc
Confidence 688765 677754 89999999777765 489999999999999998431 11222 25666 7777544 777
Q ss_pred HHHHHHHHHHH
Q 012412 406 RDAIADCISEI 416 (464)
Q Consensus 406 ~~~l~~~i~~l 416 (464)
...+.++=+.+
T Consensus 281 ~~~v~e~~rql 291 (322)
T PRK02797 281 EDIVREAQRQL 291 (322)
T ss_pred HHHHHHHHHHH
Confidence 77777664443
No 187
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=83.69 E-value=5.1 Score=35.35 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=34.7
Q ss_pred cEEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 012412 14 AHCLVLTYP--GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (464)
Q Consensus 14 ~~il~~~~~--~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (464)
.+|+++++| |-|-..-..+|+-.|+.+|++|.++-..-....+
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNL 46 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNL 46 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhh
Confidence 468877776 4599999999999999999999999877544443
No 188
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=82.86 E-value=1.6 Score=35.36 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=34.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
+||++.-.|+.+-.. ...+.++|.++|++|.++.++...+.+.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~ 43 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVT 43 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhh
Confidence 588887777755555 9999999999999999999988777776
No 189
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=82.55 E-value=49 Score=32.07 Aligned_cols=66 Identities=23% Similarity=0.248 Sum_probs=39.9
Q ss_pred cccceeccCChhHHHHHHHhCCcEec--cCCccch------hhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCC
Q 012412 352 ATGCFVTHCGWNSTMEALSLGVPMVA--MPQWSDQ------STNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 352 ~~~~vI~HgG~~s~~eal~~GvP~v~--~P~~~DQ------~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
-+-+|-|+ |..++..|+.+|.|+-. ++...|- ..|+-++.+-.-.... -.+.+++..+|.++++|+
T Consensus 244 kIIGVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv--vV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 244 KIIGVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV--VVEDDEIAAAILRLFEDE 317 (457)
T ss_pred ceEEEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE--EeccHHHHHHHHHHHHhh
Confidence 33446666 78899999999999753 3333332 1233332222011111 467899999999999886
No 190
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=81.43 E-value=15 Score=33.42 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (464)
+++|+++...+-| ..||+.|.++|++|++.+......
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~ 38 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG 38 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC
Confidence 4578887766555 578999999999888776655443
No 191
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=81.35 E-value=8.7 Score=33.78 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
..||++.+.++-.|-....-++..|.++|++|+++......+.+.+.....+..++.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS 140 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLS 140 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 56899999999999999999999999999999998876554444421113334444444
No 192
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=80.93 E-value=6.5 Score=34.46 Aligned_cols=60 Identities=12% Similarity=-0.030 Sum_probs=46.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
+..+|++.+.++-.|-....-++..|..+|++|++++.....+.+.+.....+..++.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS 142 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGS 142 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 346899999999999999999999999999999999987766655532223444444444
No 193
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=80.34 E-value=7.1 Score=35.63 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
||||++...+-| ..|++.|.++|+ |.+-+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~ 30 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVA 30 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEE
Confidence 588888666554 579999999999 554443
No 194
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=79.76 E-value=19 Score=30.78 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=56.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE---eCc---ccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLV---TTR---FFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAY 88 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~---~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (464)
-|.+++..+.|-....+.+|-..+.+|++|.++ =.. .....+. ..++.+.....++.. .... ....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~----~~~~~~~~~g~g~~~-~~~~---~~~~ 78 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFE----PHGVEFQVMGTGFTW-ETQN---READ 78 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHH----hcCcEEEECCCCCee-cCCC---cHHH
Confidence 467888899999999999999999999999665 222 1111222 226888887765533 1111 1111
Q ss_pred HHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchh
Q 012412 89 LERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILL 124 (464)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~ 124 (464)
... ....+....+.+.. ..+|+||-|....
T Consensus 79 ~~~----~~~~~~~a~~~l~~--~~~DlvVLDEi~~ 108 (173)
T TIGR00708 79 TAI----AKAAWQHAKEMLAD--PELDLVLLDELTY 108 (173)
T ss_pred HHH----HHHHHHHHHHHHhc--CCCCEEEehhhHH
Confidence 111 11223333333332 4579999997663
No 195
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=78.19 E-value=9.4 Score=33.61 Aligned_cols=143 Identities=11% Similarity=0.007 Sum_probs=77.3
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccc
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGC 355 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 355 (464)
.++.++.|..|.++ ...+..|.+.+..+.++- .. +.+++.+.. ...++...........+..+++
T Consensus 9 ~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----~~~~l~~l~-~~~~i~~~~~~~~~~~l~~adl-- 73 (202)
T PRK06718 9 SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----LTENLVKLV-EEGKIRWKQKEFEPSDIVDAFL-- 73 (202)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----CCHHHHHHH-hCCCEEEEecCCChhhcCCceE--
Confidence 35668888777654 344555666677766553 21 222222210 1134555554445566788898
Q ss_pred eeccCChhHHHHHHH----hCCcEeccCCccchhh-----HHHHHHhHhcceeecc-----CcCHHHHHHHHHHHhcCCc
Q 012412 356 FVTHCGWNSTMEALS----LGVPMVAMPQWSDQST-----NAKYILDVWKTGLKFP-----IVKRDAIADCISEILEGER 421 (464)
Q Consensus 356 vI~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~-----na~rl~~~~G~g~~l~-----~~~~~~l~~~i~~ll~~~~ 421 (464)
||.--+...+.+.++ .++++-+. |.+. .-..+.+- ++-+.+. ..-+..|++.|.+++.. +
T Consensus 74 ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~-~ 147 (202)
T PRK06718 74 VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDE-S 147 (202)
T ss_pred EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcch-h
Confidence 998888766655544 45655432 2222 22222333 3333333 22235667777766633 2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 012412 422 GKELRRNAGKWRKLAKEA 439 (464)
Q Consensus 422 ~~~~~~~a~~l~~~~~~~ 439 (464)
...+-+.+.++++.+++.
T Consensus 148 ~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 148 YESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 346777778888888764
No 196
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=77.53 E-value=29 Score=29.21 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=55.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccc------ccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHH
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF------YKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYL 89 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (464)
|.+++..+.|-....+.+|-..+.+|++|.|+-.-.. ...+. .-.++.+.....++.. .. ....+..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~---~l~~v~~~~~g~~~~~---~~-~~~~~~~ 77 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALE---RLPNIEIHRMGRGFFW---TT-ENDEEDI 77 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHH---hCCCcEEEECCCCCcc---CC-CChHHHH
Confidence 6678888999999999999999999999999432111 11111 1246888877755432 11 1111111
Q ss_pred HHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchh
Q 012412 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILL 124 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~ 124 (464)
... ...++...+.+.. ..+|+||-|....
T Consensus 78 ~~a----~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 78 AAA----AEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred HHH----HHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 111 1222222222322 4579999998764
No 197
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=77.48 E-value=10 Score=34.77 Aligned_cols=36 Identities=28% Similarity=0.197 Sum_probs=31.3
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 17 LVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 17 l~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
+|...||.|...-..++|..++++|++|.++..+..
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 356677889999999999999999999999998664
No 198
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=76.11 E-value=7.8 Score=28.19 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=30.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVT 48 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~ 48 (464)
.-++++..+...|......+|+.|.++|+.|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 56778888888999999999999999999997553
No 199
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=75.85 E-value=36 Score=29.55 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=60.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc------cccccCCCCCCceEEEccCCCCCCCCCCccCHH
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY------KSLHRDSSSSSIPLEAISDGYDEGGYAQAESIE 86 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (464)
.-.|.+++..+.|-....+.+|-..+.+|++|.++-.-... ..+. ...++.+...+.++.. . . ....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~---~l~~v~~~~~g~~~~~-~--~-~~~~ 94 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE---FGGGVEFHVMGTGFTW-E--T-QDRE 94 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh---cCCCcEEEECCCCCcc-c--C-CCcH
Confidence 34788999999999999999999999999999988643221 1111 1247888887765433 1 1 1111
Q ss_pred HHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchh
Q 012412 87 AYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILL 124 (464)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~ 124 (464)
+-.. .....+....+.+.. ..+|+||-|....
T Consensus 95 e~~~----~~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 95 RDIA----AAREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred HHHH----HHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 1111 111223333333332 4589999997663
No 200
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=75.59 E-value=77 Score=30.27 Aligned_cols=353 Identities=15% Similarity=0.089 Sum_probs=161.9
Q ss_pred CccChHHHHHHHHHHHhC--CCeEEEEeCcccccc---ccc-------CCCCCCceEEEccCCCCCCCCCCccCHHHHHH
Q 012412 23 GQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKS---LHR-------DSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (464)
Q Consensus 23 ~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~---~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (464)
|.|-=--+..-.+.+++. .|...+.+++-+... +.+ ..+.+++.|+-+.--.-- .... .....++-
T Consensus 56 GGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lV-ea~~-~~hfTllg 133 (465)
T KOG1387|consen 56 GGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLV-EAST-WKHFTLLG 133 (465)
T ss_pred CCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeee-eccc-ccceehHH
Confidence 444444455556666664 566666666522211 111 134677888877621111 1111 11112222
Q ss_pred HHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhH-HHHHHHcCCccEEEecchHHHHHHHhhhhcCcccCCCCCCcee
Q 012412 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWA-LDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~-~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (464)
.....+.-.++.+++ .|+|+-|-...++.. +.+++..++|++.+.+.+--+..+........
T Consensus 134 QaigsmIl~~Eai~r------~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq----------- 196 (465)
T KOG1387|consen 134 QAIGSMILAFEAIIR------FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQ----------- 196 (465)
T ss_pred HHHHHHHHHHHHHHh------CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhh-----------
Confidence 222222222333333 456999887766555 45566889999988776643333333322000
Q ss_pred CCCCCCCCCCCCCCccccCCCCchHHHHHHHHHh-hhccCCcEEEecchhhhhHHHHHHHHhcCCeeee-cccCCCcccc
Q 012412 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQF-ENIDKADWVLCNTFYELEEEVVEWLRKTWSLRTI-GPTIPSFYLD 247 (464)
Q Consensus 170 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~v-gp~~~~~~~~ 247 (464)
...+. -+.... ..+++. ... ..-..++.+.+||.+--..-. ..... ....-| .||
T Consensus 197 -----------~s~~l-~~~Kla-Y~rlFa-~lY~~~G~~ad~vm~NssWT~nHI~-qiW~~-~~~~iVyPPC------- 253 (465)
T KOG1387|consen 197 -----------KSGIL-VWGKLA-YWRLFA-LLYQSAGSKADIVMTNSSWTNNHIK-QIWQS-NTCSIVYPPC------- 253 (465)
T ss_pred -----------hcchh-hhHHHH-HHHHHH-HHHHhccccceEEEecchhhHHHHH-HHhhc-cceeEEcCCC-------
Confidence 00010 001001 112222 211 122456788899987333211 11111 011111 112
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEEeccccc-CCHHHHHHHHHHHhhC-------CCeEEEEEcCccc
Q 012412 248 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVE-LKAEEMEELAWGLKSS-------DQHFLWVVRESEQ 319 (464)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~-------~~~~i~~~~~~~~ 319 (464)
+.+++..-....+.+-...+++|.+-. -+.+.++-.+--+++. +...+++-..+..
T Consensus 254 ----------------~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRne 317 (465)
T KOG1387|consen 254 ----------------STEDLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNE 317 (465)
T ss_pred ----------------CHHHHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCCh
Confidence 124444433333456678888887652 1222233222222222 2344444444322
Q ss_pred Cc-----CChhhhhhccCCCcEEEEeccChH---Hhhccccccceec-----cCChhHHHHHHHhCCcEeccCCccchhh
Q 012412 320 AK-----LPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGCFVT-----HCGWNSTMEALSLGVPMVAMPQWSDQST 386 (464)
Q Consensus 320 ~~-----~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~~vI~-----HgG~~s~~eal~~GvP~v~~P~~~DQ~~ 386 (464)
+. --.+..+.+.++++|.+..-+|+. .+|..|.+ =|| |=|+ ++.|++++|.=+|+---.+--.+
T Consensus 318 eD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gvh~MwNEHFGI-sVVEyMAAGlIpi~h~SgGP~lD 394 (465)
T KOG1387|consen 318 EDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATI--GVHTMWNEHFGI-SVVEYMAAGLIPIVHNSGGPLLD 394 (465)
T ss_pred hhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhcccee--ehhhhhhhhcch-hHHHHHhcCceEEEeCCCCCcee
Confidence 10 001223344478899999999988 55666655 332 3333 67899999975543211110000
Q ss_pred HHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC-Cc-hHHHHHHHHHHHHHHHHH
Q 012412 387 NAKYILDVWKTGLKFPIVKRDAIADCISEILEG-ER-GKELRRNAGKWRKLAKEA 439 (464)
Q Consensus 387 na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~-~~-~~~~~~~a~~l~~~~~~~ 439 (464)
...-=... -.|.. .-+.++.++++-+++.. ++ .-.+|++|++-.+++-++
T Consensus 395 IV~~~~G~-~tGFl--a~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~ 446 (465)
T KOG1387|consen 395 IVTPWDGE-TTGFL--APTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL 446 (465)
T ss_pred eeeccCCc-cceee--cCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH
Confidence 00000001 11211 35778888888888744 21 234677777766666543
No 201
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=74.73 E-value=19 Score=32.40 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=23.6
Q ss_pred CccEEEe-CCch-hhHHHHHHHcCCccEEEecch
Q 012412 113 PVDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 113 p~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (464)
| |+++. |+.. .-+..=|..+|||+|.+.-+.
T Consensus 157 P-d~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 P-DVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred C-CEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 5 87765 7766 446777999999999886655
No 202
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=73.97 E-value=39 Score=30.64 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=28.6
Q ss_pred EEEE-EcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLV-LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
.|.+ -+-||-|-..-+-+||..|++.|++|..+=-.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3444 44557799999999999999999999887543
No 203
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=73.86 E-value=8.1 Score=30.80 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=36.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (464)
||++.+.++-.|.....-++.-|..+|++|.+.......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588899999999999999999999999999999986554444
No 204
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=73.67 E-value=5.3 Score=34.64 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=49.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeC-cccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTT-RFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (464)
+.+.+-..+-|-+....+|+++|.++ |++|.+-+. +...+.+.+. ....+...-+| ++.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~-~~~~v~~~~~P--~D~--------------- 83 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL-LPDRVDVQYLP--LDF--------------- 83 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG--GGG-SEEE-----SS---------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh-CCCCeEEEEeC--ccC---------------
Confidence 56666667789999999999999987 898888776 2333333210 01123333344 211
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhH--HHHHHHcCCccEEEec
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWA--LDVAKKFGLLGAPFLT 142 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~--~~~A~~~giP~v~~~~ 142 (464)
...++..++.+ +| |++|.-....|. ...|++.|||.+.+..
T Consensus 84 -----~~~~~rfl~~~----~P-~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 -----PWAVRRFLDHW----RP-DLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----HHHHHHHHHHH-------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----HHHHHHHHHHh----CC-CEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 11234455554 56 999887777664 5557888999998644
No 205
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=73.65 E-value=20 Score=26.63 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHhcC
Q 012412 30 LLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKMNG 109 (464)
Q Consensus 30 ~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 109 (464)
++.+++.|.+.|++| ++|.. -.+.+. ..|+.+..+...... +. ..+++.+..
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~----~~Gi~~~~~~~ki~~-~~---------------------~~i~~~i~~ 53 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLR----EAGLPVKTLHPKVHG-GI---------------------LAILDLIKN 53 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHH----HCCCcceeccCCCCC-CC---------------------HHHHHHhcC
Confidence 468999999999999 45554 445666 456665422111111 11 023333433
Q ss_pred CCCCccEEEeCCch---------hhHHHHHHHcCCccE
Q 012412 110 SDSPVDCIVYDSIL---------LWALDVAKKFGLLGA 138 (464)
Q Consensus 110 ~~~p~DlVI~D~~~---------~~~~~~A~~~giP~v 138 (464)
.++|+||..+.. ..-..+|...+||++
T Consensus 54 --g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 54 --GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred --CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 568999986431 123455888899865
No 206
>PRK05973 replicative DNA helicase; Provisional
Probab=73.59 E-value=9.9 Score=34.35 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=35.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
+++...+|.|-..-.+.++..-+.+|+.|.|++.+...+.+.
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~ 108 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVR 108 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHH
Confidence 567778899999999999998888999999999887655444
No 207
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.56 E-value=12 Score=33.09 Aligned_cols=145 Identities=15% Similarity=0.138 Sum_probs=76.4
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccce
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCF 356 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~v 356 (464)
+++++.|..|..+ .+-+..|.+.|..+.++-+. +.+++.+. ....++.+..--.+...+..+++ |
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~-----~~~~l~~l-~~~~~i~~~~~~~~~~dl~~~~l--V 73 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEE-----LESELTLL-AEQGGITWLARCFDADILEGAFL--V 73 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCC-----CCHHHHHH-HHcCCEEEEeCCCCHHHhCCcEE--E
Confidence 5667777776544 33345566678877655432 11222211 02246665432223455778888 9
Q ss_pred eccCChhHH-----HHHHHhCCcEec--cCCccchhhHHHHHHhHhcceeecc-----CcCHHHHHHHHHHHhcCCchHH
Q 012412 357 VTHCGWNST-----MEALSLGVPMVA--MPQWSDQSTNAKYILDVWKTGLKFP-----IVKRDAIADCISEILEGERGKE 424 (464)
Q Consensus 357 I~HgG~~s~-----~eal~~GvP~v~--~P~~~DQ~~na~rl~~~~G~g~~l~-----~~~~~~l~~~i~~ll~~~~~~~ 424 (464)
|..-|...+ .+|-..|+|+-+ -|-..| +..-..+.+- ++-+.+. ..-+..|++.|.+++.++. ..
T Consensus 74 i~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~~~-~~ 150 (205)
T TIGR01470 74 IAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPPSL-GD 150 (205)
T ss_pred EECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcchhH-HH
Confidence 988887644 444567888832 332222 1122222222 2333332 2234667777777775422 35
Q ss_pred HHHHHHHHHHHHHHH
Q 012412 425 LRRNAGKWRKLAKEA 439 (464)
Q Consensus 425 ~~~~a~~l~~~~~~~ 439 (464)
+-+.+.++++.+++.
T Consensus 151 ~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 151 LATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666677777777654
No 208
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=73.01 E-value=14 Score=31.10 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=21.1
Q ss_pred ccceeccCChh------HHHHHHHhCCcEeccCC
Q 012412 353 TGCFVTHCGWN------STMEALSLGVPMVAMPQ 380 (464)
Q Consensus 353 ~~~vI~HgG~~------s~~eal~~GvP~v~~P~ 380 (464)
.+.++.+.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33377777744 66899999999999864
No 209
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=72.66 E-value=22 Score=27.20 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=18.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhC
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHK 40 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~r 40 (464)
||||++-.+++-| +||+.|.+-
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s 22 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQS 22 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTC
T ss_pred CEEEEECCCHHHH-----HHHHHHhcC
Confidence 7999999999888 689999764
No 210
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=72.06 E-value=24 Score=29.80 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.8
Q ss_pred ceeccCChh------HHHHHHHhCCcEeccC
Q 012412 355 CFVTHCGWN------STMEALSLGVPMVAMP 379 (464)
Q Consensus 355 ~vI~HgG~~------s~~eal~~GvP~v~~P 379 (464)
.+++|+|-| .+.+|...++|+|++.
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 66 VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 388888844 6789999999999986
No 211
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.86 E-value=4.6 Score=34.51 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=24.7
Q ss_pred cEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 14 AHCLVLTYPGQ-GHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 14 ~~il~~~~~~~-GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
|||.++.-.|. |+ .++++...|||+||.++....
T Consensus 1 mKIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGKAGS-----RILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeChH
Confidence 57776554443 44 578888999999999998544
No 212
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=71.76 E-value=3.1 Score=36.00 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccChHH------------HHHHHHHHHhCCCeEEEEeCcc
Q 012412 14 AHCLVLTYPGQGHINP------------LLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p------------~l~la~~L~~rGh~V~~~~~~~ 51 (464)
.|||+...+++-++.| -..||+++..+||+|+++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 3566655555555443 3688999999999999999974
No 213
>PRK14098 glycogen synthase; Provisional
Probab=70.79 E-value=7 Score=39.75 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCCCcEEEEEcCC------CccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 10 SCKLAHCLVLTYP------GQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 10 ~~~~~~il~~~~~------~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
++++||||+++.- +.|=-.-.-+|.++|+++||+|.++.+.
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3456999976532 2355556788999999999999999984
No 214
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=70.55 E-value=27 Score=32.70 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHh-
Q 012412 293 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL- 371 (464)
Q Consensus 293 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~- 371 (464)
.+.+..+.+.+++.+..+++..... ..... .+ . ...+..++-..+++ +|+-||-||+++++..
T Consensus 20 ~e~~~~i~~~L~~~g~~v~v~~~~~--~~~~~---------~~--~-~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~ 83 (291)
T PRK02155 20 AEPLESLAAFLAKRGFEVVFEADTA--RNIGL---------TG--Y-PALTPEEIGARADL--AVVLGGDGTMLGIGRQL 83 (291)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhcCc---------cc--c-cccChhHhccCCCE--EEEECCcHHHHHHHHHh
Confidence 3456677777887777766543111 00000 00 0 00122333346788 9999999999999774
Q ss_pred ---CCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 372 ---GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 372 ---GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
++|++.+-. - .+|. +.+.+.+++.++|++++++
T Consensus 84 ~~~~~pilGIn~-----------G---~lGF-L~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 84 APYGVPLIGINH-----------G---RLGF-ITDIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCCCEEEEcC-----------C---Cccc-cccCCHHHHHHHHHHHHcC
Confidence 678775541 0 1121 1156778888888888766
No 215
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=70.49 E-value=5.4 Score=34.77 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
.+||++.-.|+.|=+.-...+++.|.++||+|.++.++...+.+.
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhh
Confidence 457887655554444437999999999999999999987665443
No 216
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=69.55 E-value=60 Score=31.29 Aligned_cols=48 Identities=27% Similarity=0.282 Sum_probs=38.0
Q ss_pred cEEEEeccChH---HhhccccccceeccCChhHHHHHHHhCCcEec--cCCccchhhHHH
Q 012412 335 KSLVVSWCPQL---EVLAHEATGCFVTHCGWNSTMEALSLGVPMVA--MPQWSDQSTNAK 389 (464)
Q Consensus 335 nv~~~~~~p~~---~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~--~P~~~DQ~~na~ 389 (464)
.+.+.+|++|. .||-.||+ =+-. |=-|+.-|..+|+|+|= .| |.++|.
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~--NfVR-GEDSFVRAqWAgkPfvWhIYP----QeddaH 295 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDL--NFVR-GEDSFVRAQWAGKPFVWHIYP----QEEDAH 295 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChh--cEee-chhHHHHHHHcCCCceeeccc----CchhhH
Confidence 34566899977 89999998 6666 66799999999999984 67 666665
No 217
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=69.05 E-value=9.4 Score=36.17 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.6
Q ss_pred ccEEEe-CCch-hhHHHHHHHcCCccEEEecch
Q 012412 114 VDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 114 ~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (464)
||+||. |+.. ..+..=|.++|||+|.+.-+.
T Consensus 153 Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 153 PDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 488886 5544 556777999999999886655
No 218
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=68.94 E-value=11 Score=33.96 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=22.1
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 18 VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 18 ~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|++..+.|-+- .+||++|.++||+|+++...
T Consensus 19 ~itN~SSG~iG--~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQLG--KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchHHH--HHHHHHHHhCCCEEEEEECc
Confidence 44555544433 46789999999999999754
No 219
>PRK08506 replicative DNA helicase; Provisional
Probab=67.64 E-value=18 Score=36.62 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=70.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccccccc-C-CCCCCceEEEccCCCCCCCCCCccCHHHHHHHHH
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHR-D-SSSSSIPLEAISDGYDEGGYAQAESIEAYLERFW 93 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~-~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (464)
|++...|+.|-..-.+.+|...+.+|+.|.|++-+...+.+.. . ....++....+..+.-. .+....+......+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~--~~e~~~~~~a~~~l~ 272 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLD--DDEWERLSDACDELS 272 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCC--HHHHHHHHHHHHHHH
Confidence 5567788889999999999998889999999999876554441 0 11233333333211100 011111111222221
Q ss_pred H----------hCcHHHHHHHHHhcCCCCCccEEEeCCchhh-------------------HHHHHHHcCCccEEEecc
Q 012412 94 Q----------IGPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFLTQ 143 (464)
Q Consensus 94 ~----------~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~~~ 143 (464)
. .....++..++.+......+|+||.|.+..- ...+|..++||++.++..
T Consensus 273 ~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~lsQL 351 (472)
T PRK08506 273 KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIALSQL 351 (472)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 1 0112344444545433234699999986421 223588999999987653
No 220
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=67.51 E-value=16 Score=34.58 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=32.0
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 19 LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
++.||.|-.--.+.||++|++||..+-+++-....
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 78899999999999999999999999999986544
No 221
>PRK05920 aromatic acid decarboxylase; Validated
Probab=67.14 E-value=6.5 Score=34.56 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
+++||++.-.|+. ...-...+.+.|.+.||+|.++.++...+.+.
T Consensus 2 ~~krIllgITGsi-aa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 2 KMKRIVLAITGAS-GAIYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCCEEEEEEeCHH-HHHHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 3568887555543 34688999999999999999999987766554
No 222
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=66.99 E-value=37 Score=32.39 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=55.9
Q ss_pred EEEEEcCCCcc-----ChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHH
Q 012412 15 HCLVLTYPGQG-----HINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYL 89 (464)
Q Consensus 15 ~il~~~~~~~G-----H~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (464)
.|++.++.+.| ...-+..|++.|.++|.+|.+++++...+........ .+..... ..
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~-------~~~~~~~--l~--------- 237 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL-------LPGELRN--LA--------- 237 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh-------CCccccc--CC---------
Confidence 45555544333 2337889999999899999999887655443310000 0100000 00
Q ss_pred HHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecc
Q 012412 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQ 143 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~ 143 (464)
....+.++..-+.. -|++|+... ...++|..+|+|+|.+...
T Consensus 238 ------g~~sL~el~ali~~----a~l~I~~DS--Gp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 238 ------GETSLDEAVDLIAL----AKAVVTNDS--GLMHVAAALNRPLVALYGS 279 (334)
T ss_pred ------CCCCHHHHHHHHHh----CCEEEeeCC--HHHHHHHHcCCCEEEEECC
Confidence 01123333333322 489998633 4678999999999987553
No 223
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=66.97 E-value=13 Score=37.39 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEeCccc
Q 012412 11 CKLAHCLVLTYPGQGHINPL------------LQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~------------l~la~~L~~rGh~V~~~~~~~~ 52 (464)
-+.+|||+...+++-.+.|. .+||+++..+|++|++++.+..
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 35679999988888888775 5899999999999999998653
No 224
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=66.17 E-value=22 Score=31.55 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
+..||++.+.++-.|-....-++-.|..+|++|++++.....+.+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v 132 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKIL 132 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHH
Confidence 4568999999999999999999999999999999999876555554
No 225
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=66.00 E-value=38 Score=34.09 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=59.9
Q ss_pred cEEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 14 AHCLVLTY-PGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 14 ~~il~~~~-~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
.+|++... ++-|-..-...|++.|+++|++|..+-+... .+. -.+...-.+.+....+..
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd--~~d-------~~~~~~~~g~~~~~ld~~---------- 64 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD--YID-------PAYHTAATGRPSRNLDSW---------- 64 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC--ccc-------HHHHHHHhCCCcccCCce----------
Confidence 35665433 4558999999999999999999988865311 000 000000000110011100
Q ss_pred HHhCcHHHHHHHHHhcCCCCCccEEEeCCc------------hhhHHHHHHHcCCccEEEecch
Q 012412 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSI------------LLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 93 ~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~------------~~~~~~~A~~~giP~v~~~~~~ 144 (464)
......+.+.++.+.+ ..|++|++.. ......+|+.++.|++.+....
T Consensus 65 -~~~~~~v~~~~~~~~~---~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 65 -MMGEELVRALFARAAQ---GADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred -eCCHHHHHHHHHHhcc---cCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 0012334444454442 3599997432 1236789999999999987643
No 226
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=65.95 E-value=21 Score=35.52 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
+||||++-.+++-| +|+++|.+.++-..+++.+.+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 58999999998776 789999998865444444444
No 227
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=65.93 E-value=20 Score=30.19 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEE
Q 012412 21 YPGQGHINPLLQFSRRLQHKGIKVTLV 47 (464)
Q Consensus 21 ~~~~GH~~p~l~la~~L~~rGh~V~~~ 47 (464)
.++-|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 445688999999999999999999886
No 228
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=65.44 E-value=82 Score=34.76 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=63.5
Q ss_pred eccChH---Hhhccccccceec---cCChhHH-HHHHHhCC---cEeccCCccchhhHHHHHHhHhc-ceeeccCcCHHH
Q 012412 340 SWCPQL---EVLAHEATGCFVT---HCGWNST-MEALSLGV---PMVAMPQWSDQSTNAKYILDVWK-TGLKFPIVKRDA 408 (464)
Q Consensus 340 ~~~p~~---~ll~~~~~~~vI~---HgG~~s~-~eal~~Gv---P~v~~P~~~DQ~~na~rl~~~~G-~g~~l~~~~~~~ 408 (464)
..+|+. .++..+|+ ++. .-|+|.+ .|+++++. -+++++ |=..-|..+ | -|+.+...+.+.
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILS---EfaGaa~~L----~~~AllVNP~D~~~ 516 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILS---EFAGAAQSL----GAGAILVNPWNITE 516 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEe---CCCchHHHh----CCceEEECCCCHHH
Confidence 446655 67778888 663 4588755 79999955 222223 222233332 3 356667789999
Q ss_pred HHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 012412 409 IADCISEILE-GERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 460 (464)
Q Consensus 409 l~~~i~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 460 (464)
++++|.++|. ++ ++-+++.+++.+.+.. -+...-++.+++.|...
T Consensus 517 vA~AI~~AL~M~~--~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 517 VAASIAQALNMPE--EEREKRHRHNFMHVTT-----HTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHHHHHhCCH--HHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHH
Confidence 9999999997 43 1344444455555542 34455566666666554
No 229
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=65.38 E-value=91 Score=26.98 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=31.2
Q ss_pred cChH-HHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 25 GHIN-PLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 25 GH~~-p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
|-+. -.-.|+..|+++||+|++.+.....+.-. ..-.|+++..+|
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~--~~y~gv~l~~i~ 62 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE--FEYNGVRLVYIP 62 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC--cccCCeEEEEeC
Confidence 4444 34567788888999999999876554333 235678888887
No 230
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.20 E-value=25 Score=31.96 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=24.0
Q ss_pred EEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 15 HCLVLTYPGQ-GHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 15 ~il~~~~~~~-GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|+.+++.++. +-+- .++|++|+++|++|.+...
T Consensus 8 k~~lItGas~~~gIG--~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIA--WGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchH--HHHHHHHHHCCCEEEEecC
Confidence 5666776652 2232 7899999999999988754
No 231
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=64.43 E-value=34 Score=31.91 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=35.0
Q ss_pred CCc-EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccc
Q 012412 12 KLA-HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (464)
Q Consensus 12 ~~~-~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (464)
.++ .|-+.-.||-|--.-.-.|.+.|.++||+|-++.-.....
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 344 4458888899999999999999999999999998765433
No 232
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=64.42 E-value=62 Score=29.39 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHH
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (464)
++++|+++...+-+ ..|++.|...++.+++.+.-.+-+... ...-. ..+..-...
T Consensus 1 ~~~~ilvlGGT~Da-----r~la~~L~~~~~~~~~ss~t~~g~~l~----~~~~~-~~~~G~l~~--------------- 55 (257)
T COG2099 1 SMMRILLLGGTSDA-----RALAKKLAAAPVDIILSSLTGYGAKLA----EQIGP-VRVGGFLGA--------------- 55 (257)
T ss_pred CCceEEEEeccHHH-----HHHHHHhhccCccEEEEEcccccccch----hccCC-eeecCcCCH---------------
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEE--eCCch----hhHHHHHHHcCCccEEE
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIV--YDSIL----LWALDVAKKFGLLGAPF 140 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI--~D~~~----~~~~~~A~~~giP~v~~ 140 (464)
..+.+++++ ..+|+|| +.+|. .-+..+|+..|||++.+
T Consensus 56 ------e~l~~~l~e-----~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 56 ------EGLAAFLRE-----EGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred ------HHHHHHHHH-----cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
No 233
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=64.39 E-value=9.4 Score=29.89 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=50.5
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEe--ccChHHhhccccccceec
Q 012412 281 VYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--WCPQLEVLAHEATGCFVT 358 (464)
Q Consensus 281 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--~~p~~~ll~~~~~~~vI~ 358 (464)
||++..-+........+++.++|++.+..++ .+.. .....+. .+..... |--....+..|++-.++-
T Consensus 1 IYlAgp~F~~~~~~~~~~~~~~L~~~g~~v~--~P~~-~~~~~~~--------~~~~~~~~i~~~d~~~i~~~D~via~l 69 (113)
T PF05014_consen 1 IYLAGPFFSEEQKARVERLREALEKNGFEVY--SPQD-NDENDEE--------DSQEWAREIFERDLEGIRECDIVIANL 69 (113)
T ss_dssp EEEESGGSSHHHHHHHHHHHHHHHTTTTEEE--GGCT-CSSS--T--------TSHHCHHHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEeCCcCCHHHHHHHHHHHHHHHhCCCEEE--eccc-ccccccc--------ccchHHHHHHHHHHHHHHHCCEEEEEC
Confidence 5665444223345677788889998888544 2111 0100000 0000001 112347788899855555
Q ss_pred cC---ChhHHHHH---HHhCCcEeccCCcc
Q 012412 359 HC---GWNSTMEA---LSLGVPMVAMPQWS 382 (464)
Q Consensus 359 Hg---G~~s~~ea---l~~GvP~v~~P~~~ 382 (464)
.| +.||..|. .+.|+|++++-...
T Consensus 70 ~~~~~d~Gt~~ElG~A~algkpv~~~~~d~ 99 (113)
T PF05014_consen 70 DGFRPDSGTAFELGYAYALGKPVILLTEDD 99 (113)
T ss_dssp CSSS--HHHHHHHHHHHHTTSEEEEEECCC
T ss_pred CCCCCCCcHHHHHHHHHHCCCEEEEEEcCC
Confidence 55 89999995 78899999876443
No 234
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=64.18 E-value=9.9 Score=28.73 Aligned_cols=84 Identities=13% Similarity=0.242 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHhcC
Q 012412 30 LLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKMNG 109 (464)
Q Consensus 30 ~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 109 (464)
++.+|+.|.+.|+++ ++++.-.+.+. ..|+.+..+-..... +....... .+.+.+..
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~----~~Gi~~~~v~~~~~~-~~~~~g~~----------------~i~~~i~~ 58 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLK----EHGIEVTEVVNKIGE-GESPDGRV----------------QIMDLIKN 58 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHH----HTT--EEECCEEHST-G-GGTHCH----------------HHHHHHHT
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHH----HcCCCceeeeeeccc-CccCCchh----------------HHHHHHHc
Confidence 578999999999765 44445556666 567876665422211 10011111 33333333
Q ss_pred CCCCccEEEeCCchhh---------HHHHHHHcCCccE
Q 012412 110 SDSPVDCIVYDSILLW---------ALDVAKKFGLLGA 138 (464)
Q Consensus 110 ~~~p~DlVI~D~~~~~---------~~~~A~~~giP~v 138 (464)
.++|+||..+.... -..+|..++||++
T Consensus 59 --~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 59 --GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp --TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred --CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 56899998764321 1446888888865
No 235
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=63.92 E-value=8.3 Score=33.28 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=33.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
+||++.-.|+-|=+ -...+.+.|.++|++|.++.++...+.+.
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 57887666665544 47999999999999999999987766655
No 236
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.57 E-value=15 Score=28.94 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=33.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
|+++.+.+...|-.-+..++..|.++||+|.++....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 7888999999999999999999999999999885543
No 237
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=63.30 E-value=13 Score=30.51 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=36.7
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
..+.||++.+.+.-||-...--+++.|++.|.+|.....-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC
Confidence 46789999999988999999999999999999998877543
No 238
>PLN02470 acetolactate synthase
Probab=63.09 E-value=14 Score=38.48 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=53.8
Q ss_pred EecccccC--CHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEe--------ccChHHhhccccc
Q 012412 284 SYGSFVEL--KAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--------WCPQLEVLAHEAT 353 (464)
Q Consensus 284 s~Gs~~~~--~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~~ll~~~~~ 353 (464)
+|||.... ....-+.+++.|++.|.+.|+-+.+.....+-+.+. ..++++++. ++-.-.-...-.+
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~----~~~~i~~i~~rhE~~A~~~Adgyar~tg~~ 77 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALT----RSNCIRNVLCRHEQGEVFAAEGYAKASGKV 77 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHh----ccCCceEEEeccHHHHHHHHHHHHHHhCCC
Confidence 35554422 234456788888888888888887765444444432 112343332 1222211122234
Q ss_pred cceeccCChh------HHHHHHHhCCcEeccC
Q 012412 354 GCFVTHCGWN------STMEALSLGVPMVAMP 379 (464)
Q Consensus 354 ~~vI~HgG~~------s~~eal~~GvP~v~~P 379 (464)
+++++|.|-| .+.+|...++|+|++.
T Consensus 78 gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 78 GVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 4488888844 6799999999999975
No 239
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=62.96 E-value=79 Score=33.77 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=27.9
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 15 HCLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 15 ~il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
.|++.+.. ..|-..-++.|++.|.++|.+|-++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 45555444 458999999999999999999998753
No 240
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=62.80 E-value=57 Score=27.40 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=54.2
Q ss_pred hhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEec-cC
Q 012412 265 TEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSW-CP 343 (464)
Q Consensus 265 ~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~-~p 343 (464)
..++-++|.+.. ...++ |.. .-.+....++..+.+.+++=+++.... .... ..+.....++ -+
T Consensus 20 A~~lg~~La~~g---~~lv~-Gg~----~GlM~a~a~ga~~~gg~viGVlp~~l~--~~~~------~~~~~i~~~~~~~ 83 (159)
T TIGR00725 20 AYRLGKELAKKG---HILIN-GGR----TGVMEAVSKGAREAGGLVVGILPDEDF--AGNP------YLTIKVKTGMNFA 83 (159)
T ss_pred HHHHHHHHHHCC---CEEEc-CCc----hhHHHHHHHHHHHCCCeEEEECChhhc--cCCC------CceEEEECCCcch
Confidence 355667777642 35555 432 246666677666667776655543211 0000 1111122233 34
Q ss_pred hHHhhc-cccccceeccCChhHH---HHHHHhCCcEeccCCc
Q 012412 344 QLEVLA-HEATGCFVTHCGWNST---MEALSLGVPMVAMPQW 381 (464)
Q Consensus 344 ~~~ll~-~~~~~~vI~HgG~~s~---~eal~~GvP~v~~P~~ 381 (464)
...++. .+|+ .++--||.||+ .|++.+++|+++++..
T Consensus 84 Rk~~m~~~sda-~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 84 RNFILVRSADV-VVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred HHHHHHHHCCE-EEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 444444 4554 34556888887 5568999999998853
No 241
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=62.44 E-value=12 Score=37.44 Aligned_cols=115 Identities=21% Similarity=0.311 Sum_probs=59.3
Q ss_pred ccChHHHHHHHHHHHh--------CCC----eEEEEeCcc-------cccccccCCCCCCceEEEccCCCCCC---CCCC
Q 012412 24 QGHINPLLQFSRRLQH--------KGI----KVTLVTTRF-------FYKSLHRDSSSSSIPLEAISDGYDEG---GYAQ 81 (464)
Q Consensus 24 ~GH~~p~l~la~~L~~--------rGh----~V~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ 81 (464)
.|.+--.+.+|++|.+ .|- +|.++|.-. +...+.+..+..+.....+|.+-... ..-.
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwis 375 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWIS 375 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S---
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhccc
Confidence 3667778888888854 254 466666321 11122222345567777777433220 1112
Q ss_pred ccCHHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCch--hhHHHHHHHcCCccEEEecch
Q 012412 82 AESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~ 144 (464)
...++.++..|... ....+.+++. .+| |+|+..... ..|..+++++|||.+.+.+..
T Consensus 376 rf~lWPyLe~fa~d---~~~~i~~e~~--~~P-dlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 376 RFDLWPYLEEFADD---AEREILAELQ--GKP-DLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp GGG-GGGHHHHHHH---HHHHHHHHHT--S---SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred hhhchhhHHHHHHH---HHHHHHHHhC--CCC-cEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 23455555555543 2233444443 256 999987543 567888999999988776654
No 242
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=62.31 E-value=29 Score=33.15 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=55.9
Q ss_pred CHHHHHHHHH-HHhhC-CCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH---HhhccccccceeccCCh----
Q 012412 292 KAEEMEELAW-GLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGCFVTHCGW---- 362 (464)
Q Consensus 292 ~~~~~~~~~~-al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~---~ll~~~~~~~vI~HgG~---- 362 (464)
..+++-.++- .+.+. +.+|++.-.+.. ...-++.++++...+++.+.+-+|++ ++|.+.++ |++-.=.
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk-~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc 285 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPK-RIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFC 285 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcc-cchHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHH
Confidence 3455444443 34433 467776544432 22335556665578999999999987 88999999 8876542
Q ss_pred hHHHHHHHhCCcEec
Q 012412 363 NSTMEALSLGVPMVA 377 (464)
Q Consensus 363 ~s~~eal~~GvP~v~ 377 (464)
-++.||..+|.|+|.
T Consensus 286 ~~ivEAaScGL~VVs 300 (426)
T KOG1111|consen 286 MVIVEAASCGLPVVS 300 (426)
T ss_pred HHHHHHHhCCCEEEE
Confidence 356899999999986
No 243
>PRK06904 replicative DNA helicase; Validated
Probab=61.98 E-value=35 Score=34.54 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=69.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCccccccccc--CCCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLHR--DSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
|++-.-|+.|-..-++.+|...+. .|+.|.|++-+...+.+.. .....++....+..+... ..+....+......+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l-~~~e~~~~~~a~~~l 302 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNL-DQQDWAKISSTVGMF 302 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCC-CHHHHHHHHHHHHHH
Confidence 556788899999999999998765 5999999999876655441 012334443333322000 011111122222222
Q ss_pred HHh-----------CcHHHHHHHHHhcCCCCCccEEEeCCchhh-------------------HHHHHHHcCCccEEEec
Q 012412 93 WQI-----------GPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 93 ~~~-----------~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~~ 142 (464)
... ....++..++.+.......|+||.|.+... .-.+|.+++||++.++.
T Consensus 303 ~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQ 382 (472)
T PRK06904 303 KQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVALSQ 382 (472)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 110 112334444444433234699999975421 12348889999998764
Q ss_pred c
Q 012412 143 Q 143 (464)
Q Consensus 143 ~ 143 (464)
.
T Consensus 383 L 383 (472)
T PRK06904 383 L 383 (472)
T ss_pred c
Confidence 3
No 244
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=61.86 E-value=1.4e+02 Score=28.02 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=21.3
Q ss_pred cEEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 14 AHCLVLTYPGQ--GHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 14 ~~il~~~~~~~--GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|+||+.-..|+ +| .+.+|.++||+|+++=.
T Consensus 1 ~~iLVtGGAGYIGSH------tv~~Ll~~G~~vvV~DN 32 (329)
T COG1087 1 MKVLVTGGAGYIGSH------TVRQLLKTGHEVVVLDN 32 (329)
T ss_pred CeEEEecCcchhHHH------HHHHHHHCCCeEEEEec
Confidence 46776655555 44 46788899999998854
No 245
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=61.63 E-value=29 Score=34.48 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=34.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~~ 57 (464)
+++...|+.|-..-++.+|..++ +.|+.|.|++.+...+.+.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 56777888899999999998887 6799999999886555443
No 246
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.40 E-value=30 Score=34.06 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccccccc----CCCCCCceEEEc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHR----DSSSSSIPLEAI 70 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~----~~~~~~~~~~~i 70 (464)
+..|+++-.-|.|-..-+--||+.|.++|++|.+++.+.++..... ....-++.|++.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 4567788888999999999999999999999999999877765431 112345666555
No 247
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=61.21 E-value=43 Score=26.27 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=53.6
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCc
Q 012412 18 VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGP 97 (464)
Q Consensus 18 ~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (464)
|++.... +=.-+..+++.|.+.|++| +++. .-.+.+. ..|+.+..+-..... .... .
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i-~aT~-gTa~~L~----~~gi~~~~v~~~~~~---~~~~-------------~ 60 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKL-YATE-GTADFLL----ENGIPVTPVAWPSEE---PQND-------------K 60 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEE-EEcc-HHHHHHH----HcCCCceEeeeccCC---CCCC-------------c
Confidence 3444443 5567889999999999999 3444 4445555 456666655321110 0000 0
Q ss_pred HHHHHHHHHhcCCCCCccEEEeCCch---------hhHHHHHHHcCCccE
Q 012412 98 QTLTELVEKMNGSDSPVDCIVYDSIL---------LWALDVAKKFGLLGA 138 (464)
Q Consensus 98 ~~l~~~~~~l~~~~~p~DlVI~D~~~---------~~~~~~A~~~giP~v 138 (464)
..+.+++++ ..+|+||..+.- ..-.-.|-.+|||++
T Consensus 61 ~~i~~~i~~-----~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 61 PSLRELLAE-----GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred hhHHHHHHc-----CCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 123334333 457999985431 224556889999986
No 248
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=61.01 E-value=29 Score=28.73 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=20.0
Q ss_pred eeccCCh------hHHHHHHHhCCcEeccCC
Q 012412 356 FVTHCGW------NSTMEALSLGVPMVAMPQ 380 (464)
Q Consensus 356 vI~HgG~------~s~~eal~~GvP~v~~P~ 380 (464)
++.|+|- +.+.+|...++|+|++.-
T Consensus 63 ~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 63 VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 8888664 466889999999999753
No 249
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=60.94 E-value=1e+02 Score=26.04 Aligned_cols=88 Identities=14% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHH
Q 012412 21 YPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTL 100 (464)
Q Consensus 21 ~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (464)
.|++|++-. .++++|.++||+|+.++.... .... ..+++....+ +.+ .
T Consensus 4 ~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~--~~~~---~~~~~~~~~d--~~d-----------------------~ 51 (183)
T PF13460_consen 4 FGATGFVGR--ALAKQLLRRGHEVTALVRSPS--KAED---SPGVEIIQGD--LFD-----------------------P 51 (183)
T ss_dssp ETTTSHHHH--HHHHHHHHTTSEEEEEESSGG--GHHH---CTTEEEEESC--TTC-----------------------H
T ss_pred ECCCChHHH--HHHHHHHHCCCEEEEEecCch--hccc---ccccccceee--ehh-----------------------h
Confidence 345565553 589999999999999997643 2321 3456666554 322 0
Q ss_pred HHHHHHhcCCCCCccEEEeCCc--------hhhHHHHHHHcCCccEEEecch
Q 012412 101 TELVEKMNGSDSPVDCIVYDSI--------LLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 101 ~~~~~~l~~~~~p~DlVI~D~~--------~~~~~~~A~~~giP~v~~~~~~ 144 (464)
..+.+.+. +.|.||.-.. ......+++..|++.+++.++.
T Consensus 52 ~~~~~al~----~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 52 DSVKAALK----GADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp HHHHHHHT----TSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred hhhhhhhh----hcchhhhhhhhhcccccccccccccccccccccceeeecc
Confidence 12222222 2588887654 2223555678899988765544
No 250
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=60.88 E-value=5.4 Score=39.89 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=43.0
Q ss_pred HHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHH---HHHHHHHHHhcCCchHHHHHHHHH
Q 012412 364 STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRD---AIADCISEILEGERGKELRRNAGK 431 (464)
Q Consensus 364 s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~---~l~~~i~~ll~~~~~~~~~~~a~~ 431 (464)
++.||+++|+|+++.= +..-+.-++.. -.|...+. +++ .+++++.++..|+ +++.+..+
T Consensus 381 v~IEAMa~glPvvAt~----~GGP~EiV~~~-~tG~l~dp-~~e~~~~~a~~~~kl~~~p---~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATN----NGGPAEIVVHG-VTGLLIDP-GQEAVAELADALLKLRRDP---ELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEec----CCCceEEEEcC-CcceeeCC-chHHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 6799999999999654 55556666666 66777763 444 6999999999997 65554443
No 251
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=60.86 E-value=1e+02 Score=25.95 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=58.6
Q ss_pred EEcCCCccChHHHH-HHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCC-----CCCCcc---CHHHH
Q 012412 18 VLTYPGQGHINPLL-QFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEG-----GYAQAE---SIEAY 88 (464)
Q Consensus 18 ~~~~~~~GH~~p~l-~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~---~~~~~ 88 (464)
.+.+...+.+..++ .+|+.|+.+|++|.=+........-. .........++++.... +..... +....
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~---~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~L 79 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDG---GRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGAL 79 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCC---CccceEEEECCCCCEEEEeeccCCCCcccccCHHHH
Confidence 44555567777665 57999999999998777654221111 12344444444332110 001100 11111
Q ss_pred HHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCch---------hhHHHHHHHcCCccEEEecch
Q 012412 89 LERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSIL---------LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~---------~~~~~~A~~~giP~v~~~~~~ 144 (464)
. .....+...+.+ . +|++|.+-|- -.....|-..|||+++..+..
T Consensus 80 -a-------~A~~~l~~al~~--~-~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 80 -A-------EASAALRRALAE--G-ADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred -H-------HHHHHHHHHHhc--C-CCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 0 111122222322 3 5999998763 123455778899998866644
No 252
>PRK08006 replicative DNA helicase; Provisional
Probab=60.37 E-value=41 Score=33.98 Aligned_cols=126 Identities=12% Similarity=0.101 Sum_probs=70.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCccccccccc--CCCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLHR--DSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
|++-.-|+.|-..-.+.+|...+. .|+.|.|++-+...+.+.. .....++....+..+.- ..+....+......+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l--~~~e~~~~~~a~~~~ 304 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQL--DDEDWARISGTMGIL 304 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCC--CHHHHHHHHHHHHHH
Confidence 567788899999999999988874 6999999998866554431 01123444433432210 011111222222222
Q ss_pred HHh-----------CcHHHHHHHHHhcCCCCCccEEEeCCchhh-------------------HHHHHHHcCCccEEEec
Q 012412 93 WQI-----------GPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 93 ~~~-----------~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~~ 142 (464)
... ....++..++.+.......|+||.|..... .-.+|++++||++.++.
T Consensus 305 ~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQ 384 (471)
T PRK08006 305 LEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQ 384 (471)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 110 112334444444433234699999985321 12458889999998765
Q ss_pred c
Q 012412 143 Q 143 (464)
Q Consensus 143 ~ 143 (464)
.
T Consensus 385 L 385 (471)
T PRK08006 385 L 385 (471)
T ss_pred c
Confidence 3
No 253
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.07 E-value=27 Score=28.33 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=42.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
+.||++-..++-+|-..---++..|...|++|.........+.+.+.....+..++.+.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iS 60 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVS 60 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 56899999999999999999999999999999988865333333211113455555554
No 254
>PLN02929 NADH kinase
Probab=59.88 E-value=41 Score=31.57 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHH-
Q 012412 292 KAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALS- 370 (464)
Q Consensus 292 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~- 370 (464)
..+..+.+.+.|++.+..+..+... .+ ......+|+ +|+-||-||++.|..
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r~----~~----------------------~~~~~~~Dl--vi~lGGDGT~L~aa~~ 83 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLRN----EL----------------------SQPIRDVDL--VVAVGGDGTLLQASHF 83 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeecc----cc----------------------ccccCCCCE--EEEECCcHHHHHHHHH
Confidence 4566777788888877766322211 01 111345688 999999999998855
Q ss_pred --hCCcEeccCCcc------chhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 371 --LGVPMVAMPQWS------DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 371 --~GvP~v~~P~~~------DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.++|++.+-... ++..|.-. +.. -.|... ..+.+++.++|++++++
T Consensus 84 ~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~-~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 84 LDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC-AATAEDFEQVLDDVLFG 137 (301)
T ss_pred cCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc-cCCHHHHHHHHHHHHcC
Confidence 468988765431 12222211 111 233322 46688999999999976
No 255
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=59.72 E-value=29 Score=32.41 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCeEEEEeCccccc
Q 012412 31 LQFSRRLQHKGIKVTLVTTRFFYK 54 (464)
Q Consensus 31 l~la~~L~~rGh~V~~~~~~~~~~ 54 (464)
.++|..++++|++|.+++......
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 467888999999999999875543
No 256
>PRK08309 short chain dehydrogenase; Provisional
Probab=59.68 E-value=54 Score=28.11 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEEeCc
Q 012412 31 LQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 31 l~la~~L~~rGh~V~~~~~~ 50 (464)
.++++.|.++|++|++++..
T Consensus 13 g~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHCcCEEEEEECC
Confidence 45999999999999998754
No 257
>PRK10867 signal recognition particle protein; Provisional
Probab=59.35 E-value=63 Score=32.24 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=35.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCccccccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHK-GIKVTLVTTRFFYKSL 56 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~~ 56 (464)
-|+++..+|.|-..-...||..|+.+ |++|.+++.+.++...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 45577777889999999999999999 9999999998766543
No 258
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=57.62 E-value=12 Score=32.47 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCcccccccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~ 57 (464)
++||++.-.|+-| ..-...+.++|.+ .||+|.++.++...+.+.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 3578875555545 6678999999999 599999999988777666
No 259
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=57.22 E-value=23 Score=31.79 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=34.9
Q ss_pred EEE-EcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 16 CLV-LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
|.| -+-||.|-..-++.||-+|+++|-+|+++=.+.++....
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~ 46 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAK 46 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHH
Confidence 445 445677999999999999999999999999988776554
No 260
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=57.04 E-value=37 Score=27.61 Aligned_cols=58 Identities=7% Similarity=-0.018 Sum_probs=43.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
.+|++-+..+-+|-.--.-++..|.++|++|..+......+.+.+.....+..++.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4789999999999999999999999999999999886655544422113344555444
No 261
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=56.61 E-value=22 Score=29.97 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=20.7
Q ss_pred eeccCChh------HHHHHHHhCCcEeccCC
Q 012412 356 FVTHCGWN------STMEALSLGVPMVAMPQ 380 (464)
Q Consensus 356 vI~HgG~~------s~~eal~~GvP~v~~P~ 380 (464)
+++|+|-| .+.||...++|+|++.-
T Consensus 64 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 64 VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 88888854 56899999999999853
No 262
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=56.41 E-value=49 Score=29.89 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=50.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCC-ceEEEccCCCCCCCCCCccCHHHHHHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSS-IPLEAISDGYDEGGYAQAESIEAYLERFW 93 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (464)
||++++..+.|=- .+.|++|.+.|++|..+.-.. +.+++....-+ -.+..+.-...+
T Consensus 7 kv~lITGASSGiG---~A~A~~l~~~G~~vvl~aRR~--drL~~la~~~~~~~~~~~~~DVtD----------------- 64 (246)
T COG4221 7 KVALITGASSGIG---EATARALAEAGAKVVLAARRE--ERLEALADEIGAGAALALALDVTD----------------- 64 (246)
T ss_pred cEEEEecCcchHH---HHHHHHHHHCCCeEEEEeccH--HHHHHHHHhhccCceEEEeeccCC-----------------
Confidence 7888887776533 578999999999999888643 33331101111 223333322322
Q ss_pred HhCcHHHHHHHHHhcCCCCCccEEEeCCch
Q 012412 94 QIGPQTLTELVEKMNGSDSPVDCIVYDSIL 123 (464)
Q Consensus 94 ~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~ 123 (464)
...+...++.+.+++.++|++|.+...
T Consensus 65 ---~~~~~~~i~~~~~~~g~iDiLvNNAGl 91 (246)
T COG4221 65 ---RAAVEAAIEALPEEFGRIDILVNNAGL 91 (246)
T ss_pred ---HHHHHHHHHHHHHhhCcccEEEecCCC
Confidence 123445556666666778999998654
No 263
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=56.41 E-value=52 Score=29.57 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=34.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHK-GIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~~~ 57 (464)
+++...++.|=..-++.++..++.+ |+.|.|++.+...+.+.
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 4567777889999999999888887 99999999887665444
No 264
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.38 E-value=75 Score=29.85 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHH--
Q 012412 293 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALS-- 370 (464)
Q Consensus 293 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~-- 370 (464)
.+..+++.+.|++.+..+.+-.... ..++. ++ ....+...+-..+++ +|+=||-||+++++.
T Consensus 19 ~e~~~~i~~~L~~~giev~v~~~~~--~~~~~---------~~---~~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~ 82 (295)
T PRK01231 19 VETLRRLKDFLLDRGLEVILDEETA--EVLPG---------HG---LQTVSRKLLGEVCDL--VIVVGGDGSLLGAARAL 82 (295)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhcCc---------cc---ccccchhhcccCCCE--EEEEeCcHHHHHHHHHh
Confidence 4556667777777777655432110 11110 00 012222333345788 999999999999875
Q ss_pred --hCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 371 --LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 371 --~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.++|++.+... ++ | -+...+.+++.++|++++++
T Consensus 83 ~~~~~Pvlgin~G-----------~l---G-Fl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 83 ARHNVPVLGINRG-----------RL---G-FLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCCCEEEEeCC-----------cc---c-ccccCCHHHHHHHHHHHHcC
Confidence 36788766631 12 2 12256789999999999876
No 265
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=56.12 E-value=52 Score=28.14 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=61.1
Q ss_pred cChHHHHHHHHHH-HhCCCeEEEEeCcccccccccCCCCCCceEEEccCC-------------CCCC----CCCCc-cCH
Q 012412 25 GHINPLLQFSRRL-QHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDG-------------YDEG----GYAQA-ESI 85 (464)
Q Consensus 25 GH~~p~l~la~~L-~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------~~~~----~~~~~-~~~ 85 (464)
+.+.-.+..|+.| ...|.+|.+.-+. ..+.+++ ..++..+.++.. .... ++.+. ...
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~---~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~ 92 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRK---HVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGL 92 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHC---C-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHH---hCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHH
Confidence 6678889999999 7899999887774 4455552 225666666511 0000 11111 122
Q ss_pred HHHHHHHHH-------hCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecch
Q 012412 86 EAYLERFWQ-------IGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 86 ~~~~~~~~~-------~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~ 144 (464)
..+...+.. .....+...++++..+. +|+||.+.. ....|+++|+|++.+.++.
T Consensus 93 ~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G--~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 93 ESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEG--VDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT----EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred HHHHHHhCCceEEEEECCHHHHHHHHHHHHHcC--CcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 222222211 22346778888887653 899999953 4678999999999876654
No 266
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=56.09 E-value=1.3e+02 Score=26.17 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=56.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc----c--ccccCCCCCCceEEEccCCCCCCCCCCccCHHHHH
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY----K--SLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYL 89 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~----~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (464)
|.+++..+.|-....+.+|-.-..+|.+|.++-.-... + .+. .-..++.|+..+.++.- ....... ..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~--~~~~~v~~~~~~~g~tw-~~~~~~~--d~- 104 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALE--KFGLGVEFHGMGEGFTW-ETQDREA--DI- 104 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHH--hhccceeEEecCCceeC-CCcCcHH--HH-
Confidence 55788888899888888877777788888877532221 1 111 01256888888876654 1111111 11
Q ss_pred HHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchh
Q 012412 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILL 124 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~ 124 (464)
......+....+.+.+ ..+|+||.|.+..
T Consensus 105 ----~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 105 ----AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred ----HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 2222233344344443 3479999998774
No 267
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=56.02 E-value=94 Score=29.05 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=57.0
Q ss_pred CceEEEEecccccCCHHHHHHHHHHH----hhCCCeEEEEEcC-cccCcCChhhhhhccCCCcEEEE-eccChH--Hhhc
Q 012412 278 ESVVYVSYGSFVELKAEEMEELAWGL----KSSDQHFLWVVRE-SEQAKLPKKFSDETLTSHKSLVV-SWCPQL--EVLA 349 (464)
Q Consensus 278 ~~~v~vs~Gs~~~~~~~~~~~~~~al----~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~nv~~~-~~~p~~--~ll~ 349 (464)
++.|.+++-.......+..+.+.+++ ++.+.++++.-.. .......+.+.+. .+++..+. ..-|+. .++.
T Consensus 172 ~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~--~~~~~~i~~~~~~~e~~~~i~ 249 (298)
T TIGR03609 172 EPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQ--LLGPAEVLSPLDPEELLGLFA 249 (298)
T ss_pred CCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHh--cCCCcEEEecCCHHHHHHHHh
Confidence 45788877543223334444444433 3457777655422 1111222233333 22222232 222333 6788
Q ss_pred cccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcc
Q 012412 350 HEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKT 397 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~ 397 (464)
++++ +|+.==+ ++.-|+.+|+|.+.++. | +-....+++. |+
T Consensus 250 ~~~~--vI~~RlH-~~I~A~~~gvP~i~i~y--~-~K~~~~~~~~-g~ 290 (298)
T TIGR03609 250 SARL--VIGMRLH-ALILAAAAGVPFVALSY--D-PKVRAFAADA-GV 290 (298)
T ss_pred hCCE--EEEechH-HHHHHHHcCCCEEEeec--c-HHHHHHHHHh-CC
Confidence 8998 8875333 44558899999998853 2 3444445555 54
No 268
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.87 E-value=21 Score=32.93 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=37.0
Q ss_pred cccccceeccCChhHHHHHHH------hCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 350 HEATGCFVTHCGWNSTMEALS------LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~------~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.+|+ +|+-||-||++.|+. .++|++.+-.. .+|..- +.+++++.+.+++++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc-cCCHHHHHHHHHHHHcC
Confidence 4577 999999999999976 47888865520 112111 45677788888888765
No 269
>PRK08840 replicative DNA helicase; Provisional
Probab=55.78 E-value=52 Score=33.21 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=70.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCccccccccc--CCCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLHR--DSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
|++-.-|+.|-..-.+.+|...+. .|+.|.|++-+...+.+.. .....++....+..+.- .-+....+......+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l--~~~e~~~~~~a~~~l 297 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQL--DDEDWARISSTMGIL 297 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCC--CHHHHHHHHHHHHHH
Confidence 567788899999999999999874 5999999999876655431 01233444333332210 011111222222222
Q ss_pred HHh-----------CcHHHHHHHHHhcCCCCCccEEEeCCchhh-------------------HHHHHHHcCCccEEEec
Q 012412 93 WQI-----------GPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 93 ~~~-----------~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~~ 142 (464)
... ....++..++.+.......|+||.|.+... .-.+|++++||++.++.
T Consensus 298 ~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQ 377 (464)
T PRK08840 298 MEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQ 377 (464)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 111 112344444445433223699999985321 12357889999998764
Q ss_pred c
Q 012412 143 Q 143 (464)
Q Consensus 143 ~ 143 (464)
-
T Consensus 378 L 378 (464)
T PRK08840 378 L 378 (464)
T ss_pred c
Confidence 3
No 270
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=55.61 E-value=21 Score=33.46 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=34.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
|||.+.--||-|-..-...||..|+++|++|.++=-...
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 578899999999999999999999999999998866443
No 271
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=55.54 E-value=16 Score=31.67 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=32.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (464)
||++.-.|+.|-+.-.+.+.++|.+.|++|+++.++....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 6777766776777776799999999999999999876543
No 272
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=55.35 E-value=2e+02 Score=27.67 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=18.1
Q ss_pred chhhHHHHHHHcCCccEEEecch
Q 012412 122 ILLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 122 ~~~~~~~~A~~~giP~v~~~~~~ 144 (464)
+....+.+|+.+|||.+++.|..
T Consensus 85 HaQGvA~aa~~lGi~a~IvMP~~ 107 (347)
T COG1171 85 HAQGVAYAAKRLGIKATIVMPET 107 (347)
T ss_pred HHHHHHHHHHHhCCCEEEEecCC
Confidence 33556888999999999986654
No 273
>PRK05595 replicative DNA helicase; Provisional
Probab=55.14 E-value=37 Score=34.03 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=33.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~~ 57 (464)
|++-..++.|-..-++.+|..++ ++|+.|.|++-+...+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 45677788899999999998775 5799999999986655443
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=55.00 E-value=14 Score=33.82 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=39.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
..+++|+-.+|.|-..=..++|.+|..+|+.|+|++.+.....+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 457889888898988889999999998899999999988777766
No 275
>PRK09620 hypothetical protein; Provisional
Probab=54.91 E-value=31 Score=31.02 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCeEEEEeCc
Q 012412 31 LQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 31 l~la~~L~~rGh~V~~~~~~ 50 (464)
..||++|.++|++|+++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 57899999999999999865
No 276
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=54.79 E-value=16 Score=33.32 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=21.3
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 25 GHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 25 GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
|=-.-+-.|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 455677889999999999999999853
No 277
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=54.15 E-value=32 Score=29.21 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=22.0
Q ss_pred ccccccceeccCCh------hHHHHHHHhCCcEeccCC
Q 012412 349 AHEATGCFVTHCGW------NSTMEALSLGVPMVAMPQ 380 (464)
Q Consensus 349 ~~~~~~~vI~HgG~------~s~~eal~~GvP~v~~P~ 380 (464)
.+..+ ++.|.|- +.+.+|...++|+|++.-
T Consensus 63 g~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 63 GRPGV--VIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SSEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ccceE--EEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 34555 8888874 467889999999999764
No 278
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=54.11 E-value=54 Score=32.04 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeCc-ccccccccCCCCCCceEEEcc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKG-IKVTLVTTR-FFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rG-h~V~~~~~~-~~~~~~~~~~~~~~~~~~~i~ 71 (464)
|+|||++-.|.-|+ .+|+.|+++| ++|++++.. ...+.+.. ....++++..++
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~-~~~~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAE-LIGGKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHh-hccccceeEEec
Confidence 46788887755453 5789999999 999999975 33333331 112356666666
No 279
>PRK11914 diacylglycerol kinase; Reviewed
Probab=53.93 E-value=39 Score=31.91 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=47.5
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceecc
Q 012412 280 VVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTH 359 (464)
Q Consensus 280 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~H 359 (464)
.+.++--|......+.+..+.+.|++.+..+.+...... . ....+. ........++ +|--
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~-~-~~~~~a----------------~~~~~~~~d~--vvv~ 71 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA-H-DARHLV----------------AAALAKGTDA--LVVV 71 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH-H-HHHHHH----------------HHHHhcCCCE--EEEE
Confidence 444544333333456677788888887776544332211 0 011111 1112234567 9999
Q ss_pred CChhHHHHHH----HhCCcEeccCC
Q 012412 360 CGWNSTMEAL----SLGVPMVAMPQ 380 (464)
Q Consensus 360 gG~~s~~eal----~~GvP~v~~P~ 380 (464)
||-||+.|++ ..++|+-++|.
T Consensus 72 GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 72 GGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CCchHHHHHhHHhccCCCcEEEEeC
Confidence 9999999987 34789999995
No 280
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=53.77 E-value=15 Score=34.58 Aligned_cols=120 Identities=13% Similarity=-0.022 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCC------CCCCccCH
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEG------GYAQAESI 85 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~ 85 (464)
..++|.++-+|-.|.+ +|+.|.++||.|.+...+.+.+..+ .-|..+...+.++-.. ......++
T Consensus 51 ~tl~IaIIGfGnmGqf-----lAetli~aGh~li~hsRsdyssaa~----~yg~~~ft~lhdlcerhpDvvLlctsilsi 121 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQF-----LAETLIDAGHGLICHSRSDYSSAAE----KYGSAKFTLLHDLCERHPDVVLLCTSILSI 121 (480)
T ss_pred cceEEEEEecCcHHHH-----HHHHHHhcCceeEecCcchhHHHHH----HhcccccccHHHHHhcCCCEEEEEehhhhH
Confidence 3567777776666643 6899999999999999888666555 3344444443221110 00011122
Q ss_pred HHHHHHHHHh-------------CcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEec
Q 012412 86 EAYLERFWQI-------------GPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 86 ~~~~~~~~~~-------------~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~ 142 (464)
...++.+-.. +...-..+++++..+ .+|++-+.++.-.-..=.+..|+|.|+.-.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk--dfDIlctHpmfGPksvnh~wqglpfVydkv 189 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK--DFDILCTHPMFGPKSVNHEWQGLPFVYDKV 189 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc--ccceEeecCCcCCCcCCCccccCceEEEEe
Confidence 2222222111 111123555666543 378888887763222334566888887544
No 281
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.70 E-value=27 Score=32.67 Aligned_cols=57 Identities=9% Similarity=0.169 Sum_probs=38.7
Q ss_pred HhhccccccceeccCChhHHHHHHH----hCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 346 EVLAHEATGCFVTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 346 ~ll~~~~~~~vI~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.+...+|+ +|+-||-||++.++. .++|++.+-... + |. +.+.+.+++.+++++++++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G~-----------l---GF-Lt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAGH-----------L---GF-LTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCCC-----------c---cc-CCcCCHHHHHHHHHHHHcC
Confidence 34446788 999999999998865 377887554210 1 11 1256678888888888765
No 282
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=53.59 E-value=70 Score=24.71 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=52.3
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHH
Q 012412 25 GHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELV 104 (464)
Q Consensus 25 GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 104 (464)
.+-.-++++++.|.+.|+++ +++. ...+.+. ..|+.+..+.... . ....+.+.+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~aT~-gT~~~l~----~~gi~~~~v~~~~-~-------------------~~~~i~~~i 63 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-VATE-GTAKYLQ----EAGIPVEVVNKVS-E-------------------GRPNIVDLI 63 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-EEch-HHHHHHH----HcCCeEEEEeecC-C-------------------CchhHHHHH
Confidence 35567889999999999999 3554 4555666 4577766654211 0 111223333
Q ss_pred HHhcCCCCCccEEEeCCch-------hhHHHHHHHcCCccEE
Q 012412 105 EKMNGSDSPVDCIVYDSIL-------LWALDVAKKFGLLGAP 139 (464)
Q Consensus 105 ~~l~~~~~p~DlVI~D~~~-------~~~~~~A~~~giP~v~ 139 (464)
+ + ..+|+||..+.. ..-.-.|-.+|||++.
T Consensus 64 ~---~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 64 K---N--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred H---c--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 3 2 457999985421 3355668999999874
No 283
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=53.49 E-value=35 Score=35.48 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEe--------ccChH--HhhccccccceeccCChh
Q 012412 294 EEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--------WCPQL--EVLAHEATGCFVTHCGWN 363 (464)
Q Consensus 294 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--------~~p~~--~ll~~~~~~~vI~HgG~~ 363 (464)
..-+.+++.|++.|.+.++-++++....+-+.+.+ .++++++. ++-.- -+-.+..+ +++|.|-|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~----~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t~GpG 87 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQ----STQIRHILARHEQGAGFIAQGMARTTGKPAV--CMACSGPG 87 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhc----cCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEECCCCc
Confidence 45667788888888888888877654444444321 12344332 11111 11123344 78787744
Q ss_pred ------HHHHHHHhCCcEeccC
Q 012412 364 ------STMEALSLGVPMVAMP 379 (464)
Q Consensus 364 ------s~~eal~~GvP~v~~P 379 (464)
.+.||...++|+|++.
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 88 ATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHHHHHHHhcCCCEEEEe
Confidence 6799999999999974
No 284
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=52.24 E-value=92 Score=29.80 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=58.5
Q ss_pred cEEEEEcCCCc-----cChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHH
Q 012412 14 AHCLVLTYPGQ-----GHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAY 88 (464)
Q Consensus 14 ~~il~~~~~~~-----GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (464)
..|+|.+..+. --..-+..|++.|.++|.+|.++.++...+...+.... + +... ......
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~--~-----~~~~---~l~~k~----- 240 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG--L-----PNAV---ILAGKT----- 240 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh--c-----CCcc---ccCCCC-----
Confidence 46677776333 23457899999999999999999987444443311000 0 0000 011111
Q ss_pred HHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecch
Q 012412 89 LERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~ 144 (464)
.+.++..-+.. .|++|+... ...++|..+|.|+|.+...+
T Consensus 241 ----------sL~e~~~li~~----a~l~I~~DS--g~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 241 ----------SLEELAALIAG----ADLVIGNDS--GPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred ----------CHHHHHHHHhc----CCEEEccCC--hHHHHHHHcCCCEEEEECCC
Confidence 13333333321 489888533 46789999999999876544
No 285
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=52.23 E-value=67 Score=28.18 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
||||.|+..+..+- +.++.+++.+.+ ++|.++.+..............|+.+..++
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 47899877766333 446677777654 778776543221111111125577777765
No 286
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=52.18 E-value=29 Score=29.22 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=34.3
Q ss_pred CcEEE-EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 13 LAHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 13 ~~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
||+|+ |+-+...|-..=+-.|.+.|.++|++|-.+=+...
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 46777 88888889999999999999999999998877543
No 287
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.13 E-value=20 Score=33.30 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=36.7
Q ss_pred cccccceeccCChhHHHHHHH---hCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 350 HEATGCFVTHCGWNSTMEALS---LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~---~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.+++ +|.-||-||+++++. .++|++.++... . | -+..++++++.+++++++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~-----------l---G-Fl~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT-----------L---G-FLTEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC-----------C---C-ccccCCHHHHHHHHHHHHcC
Confidence 4677 999999999999984 356888777321 1 1 11134577788888888766
No 288
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=52.07 E-value=2.2e+02 Score=27.19 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=31.2
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 19 LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
++.||+|-.--.+.|++.|.++|++|.+++.+..
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 7888999999999999999999999999998644
No 289
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=52.02 E-value=23 Score=32.55 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=32.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|.|.|..-||-|-..-...||..|+++|++|.++=-.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5677888888899999999999999999999887543
No 290
>PRK00784 cobyric acid synthase; Provisional
Probab=51.84 E-value=61 Score=32.97 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=26.8
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 16 CLVLTY-PGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 16 il~~~~-~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|++... ++-|-..-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 555433 3459999999999999999999987644
No 291
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=51.82 E-value=11 Score=31.62 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=25.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
||.++-.|.+|+ ++|..|.++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666665554 78999999999999999974
No 292
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=51.58 E-value=73 Score=32.37 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTR 50 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~ 50 (464)
||||++..+++.| +|+++|++. |++|.++...
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECC
Confidence 6999998888777 578888776 9999888553
No 293
>PRK08322 acetolactate synthase; Reviewed
Probab=51.46 E-value=42 Score=34.71 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=21.0
Q ss_pred cceeccCCh------hHHHHHHHhCCcEeccC
Q 012412 354 GCFVTHCGW------NSTMEALSLGVPMVAMP 379 (464)
Q Consensus 354 ~~vI~HgG~------~s~~eal~~GvP~v~~P 379 (464)
+++++|.|- +.+.+|...++|+|++.
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 338888774 46799999999999974
No 294
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.36 E-value=1.1e+02 Score=29.02 Aligned_cols=57 Identities=11% Similarity=0.214 Sum_probs=40.5
Q ss_pred HhhccccccceeccCChhHHHHHHHh----CCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 346 EVLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 346 ~ll~~~~~~~vI~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.+...+++ +|+=||-||++.|... ++|++.+... .+|... +..++++.+++++++++
T Consensus 68 ~~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~-~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 68 DAADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA-EAEAEDLDEAVERVVDR 128 (306)
T ss_pred hcccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec-cCCHHHHHHHHHHHHcC
Confidence 33446788 9999999999998764 7888876531 112222 45678888888888876
No 295
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.14 E-value=32 Score=32.24 Aligned_cols=57 Identities=18% Similarity=0.364 Sum_probs=40.5
Q ss_pred HhhccccccceeccCChhHHHHHHH----hCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 346 EVLAHEATGCFVTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 346 ~ll~~~~~~~vI~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.+...+++ +|+=||-||++.|+. .++|++.+-... + | -+.+.+++++.+++++++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-----------l---G-FLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR-----------L---G-FLATVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC-----------C---C-cccccCHHHHHHHHHHHHcC
Confidence 34446788 999999999999877 378887654211 1 2 11256788888999998876
No 296
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=51.04 E-value=31 Score=30.59 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 012412 13 LAHCLVLTYPGQG--HINPLLQFSRRLQH 39 (464)
Q Consensus 13 ~~~il~~~~~~~G--H~~p~l~la~~L~~ 39 (464)
||+||+.-++.+| ..||...++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 4789865555443 58999999999954
No 297
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=50.91 E-value=1e+02 Score=30.64 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=34.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
-|+++-.+|.|-..-+..||..|.++|++|.+++...++
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 455788888899999999999999999999999998765
No 298
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=50.28 E-value=1.7e+02 Score=30.21 Aligned_cols=112 Identities=22% Similarity=0.331 Sum_probs=67.1
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccc
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGC 355 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 355 (464)
++..++++++|++. ......++.|.+.|..+-++ ....-.++++++.. .|..+.++
T Consensus 500 ~G~~vail~~G~~~----~~al~vae~L~~~Gi~~TVv-d~rfvkPlD~~ll~-----------------~La~~h~~-- 555 (627)
T COG1154 500 EGEKVAILAFGTML----PEALKVAEKLNAYGISVTVV-DPRFVKPLDEALLL-----------------ELAKSHDL-- 555 (627)
T ss_pred cCCcEEEEecchhh----HHHHHHHHHHHhcCCCcEEE-cCeecCCCCHHHHH-----------------HHHhhcCe--
Confidence 46679999999986 23333444555544432221 12222344444322 44556666
Q ss_pred eec------cCChhH-HHHHHH-hC--CcEec--cCC-ccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 356 FVT------HCGWNS-TMEALS-LG--VPMVA--MPQ-WSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 356 vI~------HgG~~s-~~eal~-~G--vP~v~--~P~-~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
+|| +||+|| +.|.+. +| +|++. +|. +.||..-...+.+. | ++++.|.+.|...+..
T Consensus 556 ~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~-g-------Ld~~~i~~~i~~~l~~ 624 (627)
T COG1154 556 VVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAEL-G-------LDAEGIARRILEWLKA 624 (627)
T ss_pred EEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHc-C-------CCHHHHHHHHHHHHhh
Confidence 664 899986 467654 34 56654 553 34777777777777 6 6888898888777743
No 299
>PRK06321 replicative DNA helicase; Provisional
Probab=50.27 E-value=75 Score=32.14 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=34.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~ 57 (464)
|++-..|+.|-..-.+.+|...+. .|..|.|++-+...+.+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 556778899999999999998874 599999999887665443
No 300
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=50.15 E-value=27 Score=32.19 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=31.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|+|.+..-||-|-..-+..||..|+++|++|.++=-
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 467777788889999999999999999999998843
No 301
>PRK08760 replicative DNA helicase; Provisional
Probab=50.10 E-value=52 Score=33.36 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=34.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~ 57 (464)
|++...|+.|-..-++.+|...+. .|+.|.|++-+...+.+.
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~ 274 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLA 274 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHH
Confidence 557788899999999999998864 599999999887655443
No 302
>PRK06179 short chain dehydrogenase; Provisional
Probab=50.00 E-value=86 Score=28.60 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=22.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
.++++.++ |.+- ..++++|+++|++|+.++..
T Consensus 6 ~vlVtGas-g~iG--~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTGAS-SGIG--RATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred EEEEecCC-CHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 44555443 4443 58899999999999888764
No 303
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.92 E-value=33 Score=32.41 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=40.1
Q ss_pred HhhccccccceeccCChhHHHHHHHh----CCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 346 EVLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 346 ~ll~~~~~~~vI~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.+...+++ +|+=||-||++.|... ++|++.+-.. .+|- +.+.+.+++.+++++++++
T Consensus 64 ~~~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGF-Lt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 64 GFDSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGF-LTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred hcccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcc-cccCCHHHHHHHHHHHHcC
Confidence 33346788 9999999999999774 7888866420 1121 1155678888888888876
No 304
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=49.78 E-value=1.3e+02 Score=28.97 Aligned_cols=104 Identities=20% Similarity=0.182 Sum_probs=71.5
Q ss_pred CcEEEEeccChH-HhhccccccceeccC---Chh-HHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHH
Q 012412 334 HKSLVVSWCPQL-EVLAHEATGCFVTHC---GWN-STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDA 408 (464)
Q Consensus 334 ~nv~~~~~~p~~-~ll~~~~~~~vI~Hg---G~~-s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~ 408 (464)
+...+.+-.+.- .+-.+.|+ ||||= |.| .-.|+|+.|=|+| .|+..+.+. |...++++..+
T Consensus 253 gkasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d~---GYYY~~fD~~~ 318 (364)
T PF10933_consen 253 GKASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKDV---GYYYPDFDAFE 318 (364)
T ss_pred CeeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhccc---CcCCCCccHHH
Confidence 444555544444 44458899 99994 333 4589999999998 577777554 77888888888
Q ss_pred HHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 012412 409 IADCISEILEG--ERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 457 (464)
Q Consensus 409 l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l 457 (464)
=+++|.+++.+ .+.+.|+++++++=..+. -.....+..+.+.|
T Consensus 319 G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~------p~n~~nv~~y~~~L 363 (364)
T PF10933_consen 319 GARQLLRAIREHDADLDAYRARARRLLDRLS------PENPANVRAYEARL 363 (364)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhhC------CCCHHHHHHHHHhh
Confidence 88888888744 334789999988766664 33455555555544
No 305
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=49.50 E-value=34 Score=35.79 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.0
Q ss_pred cceeccCCh------hHHHHHHHhCCcEeccC
Q 012412 354 GCFVTHCGW------NSTMEALSLGVPMVAMP 379 (464)
Q Consensus 354 ~~vI~HgG~------~s~~eal~~GvP~v~~P 379 (464)
+++++|.|- +.+.+|.+.++|+|++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 338888774 47799999999999974
No 306
>PRK09739 hypothetical protein; Provisional
Probab=49.23 E-value=42 Score=29.31 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccC--hH-HHHHHHHHHHhCCCeEEEEe
Q 012412 12 KLAHCLVLTYPGQGH--IN-PLLQFSRRLQHKGIKVTLVT 48 (464)
Q Consensus 12 ~~~~il~~~~~~~GH--~~-p~l~la~~L~~rGh~V~~~~ 48 (464)
++||||++..+.+.+ -. -...+++.|.++||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999765554432 22 24445667777899998664
No 307
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=49.19 E-value=36 Score=28.52 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=25.5
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhCCC
Q 012412 280 VVYVSYGSFVELKAEEMEELAWGLKSSDQ 308 (464)
Q Consensus 280 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 308 (464)
.+|+++||....+.+.++..+.+|.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999988888889999999988775
No 308
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=49.02 E-value=58 Score=29.98 Aligned_cols=84 Identities=18% Similarity=0.338 Sum_probs=49.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccccccc----CCCCCCceEEEccCCCCCCCCCCccCHHHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHR----DSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (464)
+..+++..+.|= =.++|+.|+++||+|.++..... ++.+ .....++.+..++-++.+ .
T Consensus 7 ~~~lITGASsGI---G~~~A~~lA~~g~~liLvaR~~~--kL~~la~~l~~~~~v~v~vi~~DLs~-----~-------- 68 (265)
T COG0300 7 KTALITGASSGI---GAELAKQLARRGYNLILVARRED--KLEALAKELEDKTGVEVEVIPADLSD-----P-------- 68 (265)
T ss_pred cEEEEECCCchH---HHHHHHHHHHCCCEEEEEeCcHH--HHHHHHHHHHHhhCceEEEEECcCCC-----h--------
Confidence 344555444432 25789999999999999987532 2211 112345666666644433 0
Q ss_pred HHHHhCcHHHHHHHHHhcCCCCCccEEEeCCch
Q 012412 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSIL 123 (464)
Q Consensus 91 ~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~ 123 (464)
..+..+.+++.....++|++|....+
T Consensus 69 -------~~~~~l~~~l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 69 -------EALERLEDELKERGGPIDVLVNNAGF 94 (265)
T ss_pred -------hHHHHHHHHHHhcCCcccEEEECCCc
Confidence 12344555555544568999998655
No 309
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=48.64 E-value=33 Score=32.25 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=31.5
Q ss_pred CcEEE-EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 13 LAHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 13 ~~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
+||++ |..-||-|-..-...||-.|+++|++|.++-...
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 34444 6677788999999999999999999999995443
No 310
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=48.54 E-value=73 Score=26.80 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=28.0
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 19 LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
-+-||-|-..-...||..|+++|++|.++=...
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 455677999999999999999999999986643
No 311
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=48.25 E-value=53 Score=32.60 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=24.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
|+.++..+.. .+.+++.|.+-|-+|..+.+..
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~ 313 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSI 313 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCC
Confidence 5555544432 6679999999999999998863
No 312
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=48.12 E-value=73 Score=24.84 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEe-------ccChH---HhhccccccceeccCC
Q 012412 292 KAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS-------WCPQL---EVLAHEATGCFVTHCG 361 (464)
Q Consensus 292 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~-------~~p~~---~ll~~~~~~~vI~HgG 361 (464)
.-+...+++++++++|++.+.+....+. ...... ..+.+.+.+ |+... ++.....+ ...|+|
T Consensus 10 rGeia~r~~ra~r~~Gi~tv~v~s~~d~--~s~~~~----~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~pG 81 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIETVAVNSNPDT--VSTHVD----MADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHPG 81 (110)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEEEGGGT--TGHHHH----HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEEST
T ss_pred CCHHHHHHHHHHHHhCCcceeccCchhc--cccccc----ccccceecCcchhhhhhccHHHHhhHhhhhcC--cccccc
Confidence 3455788999999999999988865422 222221 456666665 55555 33344455 788999
Q ss_pred hhHHHHH
Q 012412 362 WNSTMEA 368 (464)
Q Consensus 362 ~~s~~ea 368 (464)
+|-..|.
T Consensus 82 yg~lse~ 88 (110)
T PF00289_consen 82 YGFLSEN 88 (110)
T ss_dssp SSTTTTH
T ss_pred cchhHHH
Confidence 9877665
No 313
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=47.94 E-value=44 Score=26.89 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=26.3
Q ss_pred cEEEE-EcCCCccChH--HHHHHHHHHHhCCCeE-EEEeCccc
Q 012412 14 AHCLV-LTYPGQGHIN--PLLQFSRRLQHKGIKV-TLVTTRFF 52 (464)
Q Consensus 14 ~~il~-~~~~~~GH~~--p~l~la~~L~~rGh~V-~~~~~~~~ 52 (464)
||++| +..+.+|+-. -.+.+|+++.++||+| .++.-...
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~Dg 43 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDG 43 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHH
Confidence 56764 5666665554 6677799999999984 55554433
No 314
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=47.93 E-value=31 Score=31.74 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=29.7
Q ss_pred EE-EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 15 HC-LVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 15 ~i-l~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|| .+..-||-|-..-...||..|+++|++|.++=-
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~ 38 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGC 38 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 44 466777889999999999999999999998843
No 315
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.93 E-value=7.7 Score=34.19 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=66.3
Q ss_pred EEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHH
Q 012412 16 CLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (464)
Q Consensus 16 il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 94 (464)
|.++-.. +..|+...+.++..++.+|=.+.|+++....+...+- .....+.+.+-..|....+.+.. ..+..+..
T Consensus 82 i~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~-aA~r~~gy~~~~~w~~G~lTN~~---~l~g~~~~ 157 (251)
T KOG0832|consen 82 IHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVER-AARRAGGYSHNRKWLGGLLTNAR---ELFGALVR 157 (251)
T ss_pred cEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHH-HHHHhcCceeeeeeccceeecch---hhcccccc
Confidence 3333333 4478889999999999999999999987665544310 01123333333333331111111 11111111
Q ss_pred hCcHHHHHHHHHhcCCCCCccEEEe-CCch-hhHHHHHHHcCCccEEEecchH
Q 012412 95 IGPQTLTELVEKMNGSDSPVDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQSC 145 (464)
Q Consensus 95 ~~~~~l~~~~~~l~~~~~p~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~~ 145 (464)
. .....+. ..+..+..| ||||. |... ..+..=|.+++||+|.+.-+.|
T Consensus 158 ~-~~~~pd~-~~f~~t~~~-D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 158 K-FLSLPDA-LCFLPTLTP-DLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred c-ccCCCcc-eeecccCCc-ceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 0 0000111 112233355 88887 6666 5577779999999998766553
No 316
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=47.88 E-value=57 Score=27.38 Aligned_cols=108 Identities=25% Similarity=0.273 Sum_probs=54.3
Q ss_pred EEEEEcCCCccChHH----HHHHHHHHHhC-CCeEEEEeCcccccccc---cCCCCCCc-eEEEccCCCCCCCCCCccCH
Q 012412 15 HCLVLTYPGQGHINP----LLQFSRRLQHK-GIKVTLVTTRFFYKSLH---RDSSSSSI-PLEAISDGYDEGGYAQAESI 85 (464)
Q Consensus 15 ~il~~~~~~~GH~~p----~l~la~~L~~r-Gh~V~~~~~~~~~~~~~---~~~~~~~~-~~~~i~~~~~~~~~~~~~~~ 85 (464)
+|+++.-...|.+++ ++..|++|.+. |.+|+.++-....+... +.....|+ +.+.+.+.... ....
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~-----~~~~ 75 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALA-----EYDP 75 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGT-----TC-H
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCcccc-----ccCH
Confidence 355554444555554 67889999885 78888877653121111 00012333 34444321111 0111
Q ss_pred HHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCch---hhHHHHHHHcCCccEEE
Q 012412 86 EAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSIL---LWALDVAKKFGLLGAPF 140 (464)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~---~~~~~~A~~~giP~v~~ 140 (464)
..+. ..+.+++++. .| |+|+..... ..+..+|.++|.|++.-
T Consensus 76 ~~~a--------~~l~~~~~~~----~~-~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 76 EAYA--------DALAELIKEE----GP-DLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp HHHH--------HHHHHHHHHH----T--SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred HHHH--------HHHHHHHHhc----CC-CEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 2221 1233444442 44 999987554 34788899999998874
No 317
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=47.25 E-value=78 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=21.3
Q ss_pred ccceeccCChh------HHHHHHHhCCcEeccC
Q 012412 353 TGCFVTHCGWN------STMEALSLGVPMVAMP 379 (464)
Q Consensus 353 ~~~vI~HgG~~------s~~eal~~GvP~v~~P 379 (464)
.+.+++|.|-| .+.+|.+.++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 33488888854 6689999999999983
No 318
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.23 E-value=38 Score=31.84 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHhhccccccceeccCChhHHHHHHH----hCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 345 LEVLAHEATGCFVTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 345 ~~ll~~~~~~~vI~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.++...+|+ +|+=||-||++.|.. .++|++.+-.. ++ |... +.+.+++.+++++++++
T Consensus 63 ~~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G-----------~l---GFL~-~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 63 TELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG-----------HL---GFLT-QIPREYMTDKLLPVLEG 124 (296)
T ss_pred hhcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC-----------CC---eEee-ccCHHHHHHHHHHHHcC
Confidence 344446888 999999999999875 37888865421 12 2211 56788888889888876
No 319
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=47.13 E-value=40 Score=34.78 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=50.5
Q ss_pred cChHHhhccccccceeccCC-h-hHHHHHHHhCCcEeccCCcc-----chhhHHHHHHhHhcceeecc-CcCHHHHHHHH
Q 012412 342 CPQLEVLAHEATGCFVTHCG-W-NSTMEALSLGVPMVAMPQWS-----DQSTNAKYILDVWKTGLKFP-IVKRDAIADCI 413 (464)
Q Consensus 342 ~p~~~ll~~~~~~~vI~HgG-~-~s~~eal~~GvP~v~~P~~~-----DQ~~na~rl~~~~G~g~~l~-~~~~~~l~~~i 413 (464)
+++.+++..|+++.|-|.=- | =|-+||+++|||.|..-+.+ .+... .-... |+-+.-. ..+.++..+.|
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~--~~~~~-GV~VvdR~~~n~~e~v~~l 537 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE--DPEEY-GVYVVDRRDKNYDESVNQL 537 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS---HHGGG-TEEEE-SSSS-HHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc--cCcCC-cEEEEeCCCCCHHHHHHHH
Confidence 47889999999966655321 2 38899999999999865432 22222 11234 5555444 66666666666
Q ss_pred HHHhc----CCc--hHHHHHHHHHHHHHH
Q 012412 414 SEILE----GER--GKELRRNAGKWRKLA 436 (464)
Q Consensus 414 ~~ll~----~~~--~~~~~~~a~~l~~~~ 436 (464)
...|. -++ ....|++++++++.+
T Consensus 538 a~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 538 ADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 66552 221 235677777766554
No 320
>PRK05854 short chain dehydrogenase; Provisional
Probab=46.68 E-value=1.1e+02 Score=28.88 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=23.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|+++++.++. -+ =.++|+.|+++|++|.+++..
T Consensus 15 k~~lITGas~-GI--G~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASD-GL--GLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCC-hH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4556665543 23 267899999999999988754
No 321
>PRK06194 hypothetical protein; Provisional
Probab=46.24 E-value=84 Score=28.98 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
.++++.++ |-+ =..+++.|.++|++|+++..
T Consensus 8 ~vlVtGas-ggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 8 VAVITGAA-SGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred EEEEeCCc-cHH--HHHHHHHHHHCCCEEEEEeC
Confidence 33444443 333 24688999999999988765
No 322
>PRK11269 glyoxylate carboligase; Provisional
Probab=45.92 E-value=55 Score=34.23 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.0
Q ss_pred eeccCC------hhHHHHHHHhCCcEeccC
Q 012412 356 FVTHCG------WNSTMEALSLGVPMVAMP 379 (464)
Q Consensus 356 vI~HgG------~~s~~eal~~GvP~v~~P 379 (464)
++.|.| .+.+.+|...++|+|++.
T Consensus 72 ~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 72 CIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 666666 678899999999999974
No 323
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=45.83 E-value=16 Score=31.28 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=22.0
Q ss_pred ccccccceeccCChhHHHHHHHhCCcEeccCCcc
Q 012412 349 AHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWS 382 (464)
Q Consensus 349 ~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~ 382 (464)
..+++ +|+.||......... ++|+|-+|...
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 56788 999999999888877 99999999754
No 324
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=45.53 E-value=1.2e+02 Score=30.59 Aligned_cols=106 Identities=10% Similarity=0.136 Sum_probs=59.5
Q ss_pred EEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHH
Q 012412 16 CLVL-TYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (464)
Q Consensus 16 il~~-~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 94 (464)
|++. +.++-|-..-+..|++.|+++|++|..+=+.. +.+. . .++..-.+.+....+. ++
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~--d~~D-----~--~~~~~~~g~~~~~ld~------~~----- 61 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGP--DYID-----P--MFHTQATGRPSRNLDS------FF----- 61 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCC--CCCC-----H--HHHHHHhCCchhhCCc------cc-----
Confidence 4444 33345889999999999999999999885421 1010 0 0000000111000000 00
Q ss_pred hCcHHHHHHHHHhcCCCCCccEEEeCCc-------h-----hhHHHHHHHcCCccEEEecch
Q 012412 95 IGPQTLTELVEKMNGSDSPVDCIVYDSI-------L-----LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 95 ~~~~~l~~~~~~l~~~~~p~DlVI~D~~-------~-----~~~~~~A~~~giP~v~~~~~~ 144 (464)
.....+.+.+..+.+ ..|++|++.. . .....+|+.++.|++.+....
T Consensus 62 ~~~~~i~~~~~~~~~---~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 62 MSEAQIQECFHRHSK---GTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred CCHHHHHHHHHHhcc---cCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 123334444444442 3599996643 1 236789999999999988654
No 325
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=45.43 E-value=24 Score=30.30 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=31.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
||++.-.|+ +...-...+.+.|.++|++|.++.++...+.+.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 676655554 445566799999999999999999987766555
No 326
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=45.42 E-value=1.6e+02 Score=25.43 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=24.3
Q ss_pred CCCCCCcEEEEEcCCCccChHHHHHHHHHHHhC
Q 012412 8 PTSCKLAHCLVLTYPGQGHINPLLQFSRRLQHK 40 (464)
Q Consensus 8 ~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~r 40 (464)
+++.+.++++++- |+.||..=|+.|-+.|.++
T Consensus 33 ~Pk~~s~~~lVvl-GSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 33 DPKDKSLSTLVVL-GSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred CCcCCcceEEEEE-cCCCcHHHHHHHHHHHHhh
Confidence 3445566777664 4559999999999999776
No 327
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=44.90 E-value=47 Score=31.52 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=24.8
Q ss_pred cccccceeccCChhHHHHHHHhCCcEeccC
Q 012412 350 HEATGCFVTHCGWNSTMEALSLGVPMVAMP 379 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~~GvP~v~~P 379 (464)
.+|+ ||+.++..+..-|-..|+|.+.+-
T Consensus 93 ~pDl--Vi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 93 NPDL--IISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred CCCE--EEECCchHHHHHHHhcCCCEEEEe
Confidence 5677 999999999999999999999654
No 328
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.70 E-value=44 Score=31.36 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=39.6
Q ss_pred HhhccccccceeccCChhHHHHHHH----hCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 346 EVLAHEATGCFVTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 346 ~ll~~~~~~~vI~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.+...+++ +|+=||-||++.++. +++|++.+-... + |. +.+++++++.+++++++++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-----------l---GF-l~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN-----------L---GF-LTDLDPDNALQQLSDVLEG 119 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC-----------C---Cc-ccccCHHHHHHHHHHHHcC
Confidence 34446788 999999999999975 367877554211 2 22 1145688899999999876
No 329
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=44.54 E-value=33 Score=32.50 Aligned_cols=48 Identities=10% Similarity=0.252 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEE
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEA 69 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (464)
..|||+++-.|+.|= .+|..|.+.||+|+++.... .+.+. ..++.+..
T Consensus 4 ~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~----~~g~~~~~ 51 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVR----ENGLQVDS 51 (313)
T ss_pred cCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHH----hCCeEEEe
Confidence 457999996666553 46778999999999999865 34444 44555543
No 330
>PRK05693 short chain dehydrogenase; Provisional
Probab=44.46 E-value=55 Score=30.03 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=22.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|.++++.++ |.+- ..+++.|.++|++|+.++..
T Consensus 2 k~vlItGas-ggiG--~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 2 PVVLITGCS-SGIG--RALADAFKAAGYEVWATARK 34 (274)
T ss_pred CEEEEecCC-ChHH--HHHHHHHHHCCCEEEEEeCC
Confidence 455555543 3333 47888999999999887653
No 331
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=44.37 E-value=1.7e+02 Score=30.54 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=31.1
Q ss_pred ccCChhHHHHHHHhC--CcE--eccCC-ccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHh
Q 012412 358 THCGWNSTMEALSLG--VPM--VAMPQ-WSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEIL 417 (464)
Q Consensus 358 ~HgG~~s~~eal~~G--vP~--v~~P~-~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll 417 (464)
.+||+|+...+.... +|+ +.+|. +.+........++. | ++++.|.+++.++|
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~~-G-------l~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKRN-H-------LTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHHH-C-------cCHHHHHHHHHHHh
Confidence 579998866555543 333 33444 33433333444444 5 78899998887765
No 332
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.30 E-value=65 Score=30.46 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHh--
Q 012412 294 EEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL-- 371 (464)
Q Consensus 294 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~-- 371 (464)
+.+..+.+.|++.+..+.+-..... ..+. ..+ . ...-..+++ +|+-||-||+++++..
T Consensus 19 ~~~~~i~~~L~~~g~~v~v~~~~~~--~~~~--------------~~~-~-~~~~~~~d~--vi~~GGDGT~l~~~~~~~ 78 (305)
T PRK02645 19 EAAERCAKQLEARGCKVLMGPSGPK--DNPY--------------PVF-L-ASASELIDL--AIVLGGDGTVLAAARHLA 78 (305)
T ss_pred HHHHHHHHHHHHCCCEEEEecCchh--hccc--------------cch-h-hccccCcCE--EEEECCcHHHHHHHHHhc
Confidence 5566777778877877654332110 0000 001 1 122235677 9999999999999764
Q ss_pred --CCcEeccCC
Q 012412 372 --GVPMVAMPQ 380 (464)
Q Consensus 372 --GvP~v~~P~ 380 (464)
++|++.+..
T Consensus 79 ~~~~pv~gin~ 89 (305)
T PRK02645 79 PHDIPILSVNV 89 (305)
T ss_pred cCCCCEEEEec
Confidence 789887764
No 333
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.99 E-value=1.3e+02 Score=26.75 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=30.5
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 17 LVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 17 l~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
++---.+.|--.-+..++.-+...||+|++++++.-.
T Consensus 32 lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 32 LIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred EEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 3444557788889999999999999999999998543
No 334
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=43.99 E-value=79 Score=27.31 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 28 NPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 28 ~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
.-+..+|+.|.+.|+++. .| +...+.+. ..|+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT-~GTAk~L~----e~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-ST-GGTAKFLK----EAGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-Ec-cHHHHHHH----HcCCeEEEhh
Confidence 457899999999999994 44 45666777 6778777775
No 335
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=43.45 E-value=69 Score=28.85 Aligned_cols=100 Identities=11% Similarity=0.128 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCcc--C--hHHHHHHHHHHHhCCCeEEEEeCccc--ccccccCCCCCCce--EEEccCCCCCCCCCCccC
Q 012412 13 LAHCLVLTYPGQG--H--INPLLQFSRRLQHKGIKVTLVTTRFF--YKSLHRDSSSSSIP--LEAISDGYDEGGYAQAES 84 (464)
Q Consensus 13 ~~~il~~~~~~~G--H--~~p~l~la~~L~~rGh~V~~~~~~~~--~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~ 84 (464)
...|+|.+..+.. . ..-+..|++.|.++|.+|.+++++.. .+..... ..+.. +..+.. ..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~- 172 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQI--AAGLQNPVINLAG---------KT- 172 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHH--HTTHTTTTEEETT---------TS-
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHH--HHhcccceEeecC---------CC-
Confidence 4456676665441 1 23368999999999999988888766 2222200 11111 222210 01
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecch
Q 012412 85 IEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~ 144 (464)
.+.++..-+.. .|++|+... ...++|..+|+|++.+....
T Consensus 173 --------------~l~e~~ali~~----a~~~I~~Dt--g~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 173 --------------SLRELAALISR----ADLVIGNDT--GPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ---------------HHHHHHHHHT----SSEEEEESS--HHHHHHHHTT--EEEEESSS
T ss_pred --------------CHHHHHHHHhc----CCEEEecCC--hHHHHHHHHhCCEEEEecCC
Confidence 12233232321 489998533 46889999999999876544
No 336
>PRK06849 hypothetical protein; Provisional
Probab=43.37 E-value=46 Score=32.65 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
+++||+..... .-.+.+++.|.++||+|.++....
T Consensus 4 ~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 56888874332 358999999999999999997754
No 337
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.15 E-value=52 Score=30.30 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=36.8
Q ss_pred cccccceeccCChhHHHHHHHh-----CCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 350 HEATGCFVTHCGWNSTMEALSL-----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~~-----GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.+|+ +|+=||-||++.|+.. .+|++.+-..+ ++ |.. .+.+.+++.+++++++++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G----------~l---GFL-~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD----------QL---GFY-CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC----------CC---eEc-ccCCHHHHHHHHHHHHcC
Confidence 3577 9999999999999874 56665443200 11 211 256778888888888876
No 338
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=42.85 E-value=57 Score=33.94 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=22.3
Q ss_pred cccccceeccCChh------HHHHHHHhCCcEeccC
Q 012412 350 HEATGCFVTHCGWN------STMEALSLGVPMVAMP 379 (464)
Q Consensus 350 ~~~~~~vI~HgG~~------s~~eal~~GvP~v~~P 379 (464)
+..+ +++|.|-| .+.||...++|+|++-
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3445 88888855 5789999999999974
No 339
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=42.80 E-value=21 Score=30.78 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=30.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
||++.-.|+-|- .-...+.+.|.++|++|.++.++...+.+.
T Consensus 1 ~illgvtGsiaa-~ka~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGV-IYGIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHH-HHHHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 355443344343 345889999999999999999988776665
No 340
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=42.80 E-value=58 Score=27.51 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHh-CCCeEEEE
Q 012412 26 HINPLLQFSRRLQH-KGIKVTLV 47 (464)
Q Consensus 26 H~~p~l~la~~L~~-rGh~V~~~ 47 (464)
|.....+|+++|.+ +|.++.+.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~ 23 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVE 23 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 78889999999988 45544443
No 341
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=42.76 E-value=74 Score=30.56 Aligned_cols=102 Identities=12% Similarity=0.012 Sum_probs=55.0
Q ss_pred EEEEEcCCCcc---C--hHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHH
Q 012412 15 HCLVLTYPGQG---H--INPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYL 89 (464)
Q Consensus 15 ~il~~~~~~~G---H--~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (464)
-|+|.+..+.| + ...+..|++.|.++|++|.+++.+...+...+.... .+..........
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~-------~~~~~~~~~~~l-------- 246 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAA-------LNTEQQAWCRNL-------- 246 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHh-------cccccccceeec--------
Confidence 35566644322 2 235789999998889999998887655444311000 000000000000
Q ss_pred HHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEec
Q 012412 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 90 ~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~ 142 (464)
. ....+.++..-+.. .|++|+... ...++|..+|+|++.++.
T Consensus 247 ---~--g~~sL~el~ali~~----a~l~I~nDT--Gp~HlAaA~g~P~valfG 288 (348)
T PRK10916 247 ---A--GETQLEQAVILIAA----CKAIVTNDS--GLMHVAAALNRPLVALYG 288 (348)
T ss_pred ---c--CCCCHHHHHHHHHh----CCEEEecCC--hHHHHHHHhCCCEEEEEC
Confidence 0 00123333333322 489998633 368899999999998755
No 342
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=42.68 E-value=1.8e+02 Score=23.47 Aligned_cols=117 Identities=13% Similarity=0.214 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCcccCc---CChhhhhhccCCCcEEEE------eccChHHhhccccccceeccCC-
Q 012412 292 KAEEMEELAWGLKSSDQHFLWVVRESEQAK---LPKKFSDETLTSHKSLVV------SWCPQLEVLAHEATGCFVTHCG- 361 (464)
Q Consensus 292 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~nv~~~------~~~p~~~ll~~~~~~~vI~HgG- 361 (464)
..+-.+++.++.++.+..+.++.+-.+.+. ...++... .+++++.- .-+--..++..||+ ||-.=|
T Consensus 10 HtdWRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~--e~~~fw~D~k~a~iNaiRT~~li~~aDv--vVvrFGe 85 (144)
T TIGR03646 10 HTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGK--QPSNFWRDDAAASINNIRTRKLIEKADV--VIALFGE 85 (144)
T ss_pred cchHHHHHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCC--CCccccccccccchhhHHHHHHHhhCCE--EEEEech
Confidence 346777788888866666555543322111 11111111 23333221 11233477889999 887766
Q ss_pred ----hhHHHHH---HHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHh
Q 012412 362 ----WNSTMEA---LSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEIL 417 (464)
Q Consensus 362 ----~~s~~ea---l~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll 417 (464)
+|+.+.| ++.|+|++++--.. -..-|.+. ..+-..---+++++.+.++.++
T Consensus 86 kYKQWNaAfDAg~aaAlgKplI~lh~~~----~~HpLKEv-daaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 86 KYKQWNAAFDAGYAAALGKPLIILRPEE----LIHPLKEV-DNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred HHHHHHHHhhHHHHHHcCCCeEEecchh----ccccHHHH-hHHHHHHhcCHHHHHHHHHHhh
Confidence 6777665 78899998865221 11112222 1111111136777777776654
No 343
>PRK13059 putative lipid kinase; Reviewed
Probab=42.53 E-value=71 Score=29.95 Aligned_cols=67 Identities=9% Similarity=0.029 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHH---
Q 012412 293 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEAL--- 369 (464)
Q Consensus 293 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal--- 369 (464)
.+.+..+...+++.+..+.+...... .. .+ .. ....-..+++ +|.-||-||+.|++
T Consensus 18 ~~~~~~i~~~l~~~g~~~~~~~~~~~-~~-~~-~~----------------~~~~~~~~d~--vi~~GGDGTv~evv~gl 76 (295)
T PRK13059 18 ISELDKVIRIHQEKGYLVVPYRISLE-YD-LK-NA----------------FKDIDESYKY--ILIAGGDGTVDNVVNAM 76 (295)
T ss_pred HHHHHHHHHHHHHCCcEEEEEEccCc-ch-HH-HH----------------HHHhhcCCCE--EEEECCccHHHHHHHHH
Confidence 35566777888887777554322211 10 01 10 1122234567 99999999998874
Q ss_pred H---hCCcEeccCC
Q 012412 370 S---LGVPMVAMPQ 380 (464)
Q Consensus 370 ~---~GvP~v~~P~ 380 (464)
. .++|+-++|.
T Consensus 77 ~~~~~~~~lgviP~ 90 (295)
T PRK13059 77 KKLNIDLPIGILPV 90 (295)
T ss_pred HhcCCCCcEEEECC
Confidence 2 3589999995
No 344
>PLN00016 RNA-binding protein; Provisional
Probab=42.30 E-value=33 Score=33.45 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=26.0
Q ss_pred CcEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 13 LAHCLVLTY--PGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 13 ~~~il~~~~--~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
+++||++.. |++|.+- ..|++.|.++||+|+.++...
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 467887622 3334444 467789999999999998753
No 345
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=42.24 E-value=1.6e+02 Score=28.09 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=33.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
-|+++..+|.|-..-+..||..|+.+|++|.++..+.++
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 455788788899999999999999999999999987654
No 346
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=42.22 E-value=47 Score=29.09 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=28.9
Q ss_pred cEEEEEcCCCccChHHHHH-HHHHHHh-CCCeEEEEeCc
Q 012412 14 AHCLVLTYPGQGHINPLLQ-FSRRLQH-KGIKVTLVTTR 50 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~-la~~L~~-rGh~V~~~~~~ 50 (464)
|||+++-++.+||..-+.. +++.+.+ .|++|.++.-+
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 5899888888999998776 5666666 89999887753
No 347
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=42.09 E-value=31 Score=31.19 Aligned_cols=42 Identities=10% Similarity=-0.010 Sum_probs=31.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~ 57 (464)
|++.-.|+.+-+.-.+.|.+.|.++ ||+|.++.++...+.+.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 4543334334447899999999999 99999999987776666
No 348
>PRK13055 putative lipid kinase; Reviewed
Probab=42.09 E-value=90 Score=29.92 Aligned_cols=81 Identities=11% Similarity=-0.016 Sum_probs=45.5
Q ss_pred eEEEEecccccCCHHHHHHHHHHHhhCCCeEEEE-EcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceec
Q 012412 280 VVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWV-VRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVT 358 (464)
Q Consensus 280 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~ 358 (464)
.|.++-.|......+.+..+...|++.+..+.+. +.... ....++.. .......++ +|-
T Consensus 6 ~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~--~~a~~~~~----------------~~~~~~~d~--vvv 65 (334)
T PRK13055 6 RLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEP--NSAKNEAK----------------RAAEAGFDL--IIA 65 (334)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCC--ccHHHHHH----------------HHhhcCCCE--EEE
Confidence 3445544433333466677778888777665432 21110 01111111 111233466 999
Q ss_pred cCChhHHHHHHHh------CCcEeccCC
Q 012412 359 HCGWNSTMEALSL------GVPMVAMPQ 380 (464)
Q Consensus 359 HgG~~s~~eal~~------GvP~v~~P~ 380 (464)
-||-||+.|++.. .+|+-++|.
T Consensus 66 ~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 66 AGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred ECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 9999999998743 467888995
No 349
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=42.08 E-value=26 Score=34.41 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=26.0
Q ss_pred EEEE-EcCCCccChHHHHHHHHHHHhCCCeEEE
Q 012412 15 HCLV-LTYPGQGHINPLLQFSRRLQHKGIKVTL 46 (464)
Q Consensus 15 ~il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~ 46 (464)
+|++ -+.++.|-..-++.|.++|++||++|.=
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 4555 4555779999999999999999999853
No 350
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=41.94 E-value=1.5e+02 Score=23.51 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=37.2
Q ss_pred hHHHHHhhcCCCCceEEEEecccccC-CHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhh
Q 012412 266 EACMKWLNDRAKESVVYVSYGSFVEL-KAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKF 326 (464)
Q Consensus 266 ~~~~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 326 (464)
.+..+|+... -+++|.|-.... +++.+..+++.+.+.+.-.+..-.+.....+|+++
T Consensus 34 ~d~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~ 91 (123)
T PF07905_consen 34 PDPSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEI 91 (123)
T ss_pred CCHHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHH
Confidence 4566787753 377777776655 67778889999998887655443333334566544
No 351
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=41.67 E-value=93 Score=26.57 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=47.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccc---ccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHH
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK---SLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (464)
.|.+++..+.|-....+.+|-.-+-+|.+|.++-.=.... .......-.++.+.....++.. ........
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~---~~~~~~~~---- 77 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVW---RMNEEEED---- 77 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT-------GGGHHHH----
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccc---cCCCcHHH----
Confidence 3778888899998888877777777888998886532200 0000011234777777765533 11111111
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEEeCCchh
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILL 124 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~ 124 (464)
.......+....+.+.. ..+|+||-|....
T Consensus 78 -~~~~~~~~~~a~~~i~~--~~~dlvILDEi~~ 107 (172)
T PF02572_consen 78 -RAAAREGLEEAKEAISS--GEYDLVILDEINY 107 (172)
T ss_dssp -HHHHHHHHHHHHHHTT---TT-SEEEEETHHH
T ss_pred -HHHHHHHHHHHHHHHhC--CCCCEEEEcchHH
Confidence 22222333344344433 4579999997653
No 352
>PRK12743 oxidoreductase; Provisional
Probab=41.65 E-value=1.1e+02 Score=27.54 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=22.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|.++++.++ |.+- ..+++.|.++|++|.++..
T Consensus 3 k~vlItGas-~giG--~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 3 QVAIVTASD-SGIG--KACALLLAQQGFDIGITWH 34 (256)
T ss_pred CEEEEECCC-chHH--HHHHHHHHHCCCEEEEEeC
Confidence 345555544 3343 6789999999999988754
No 353
>PRK13973 thymidylate kinase; Provisional
Probab=41.57 E-value=2.1e+02 Score=25.27 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=30.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
|+|--..|.|-..-+-.|++.|..+|+.|.+...|.
T Consensus 6 IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~ 41 (213)
T PRK13973 6 ITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG 41 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 556667788999999999999999999998886664
No 354
>PRK06841 short chain dehydrogenase; Provisional
Probab=41.41 E-value=89 Score=28.13 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=22.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
.+||+. |+.|.+ -..+|+.|.++|++|..+....
T Consensus 16 k~vlIt--Gas~~I--G~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 16 KVAVVT--GGASGI--GHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeCCH
Confidence 345443 333433 3678999999999998887643
No 355
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=40.95 E-value=1e+02 Score=30.83 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=34.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~ 57 (464)
+++...++.|-..-++.+|..++. .|+.|.|++-+...+.+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 556777788999999999998875 699999999987666553
No 356
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.94 E-value=32 Score=33.60 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=35.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
||+---|+-|--.=++.++..|+.+| +|.|++.+.....+.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 56666778899999999999999999 999999987776665
No 357
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=40.89 E-value=1.6e+02 Score=30.28 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=64.7
Q ss_pred cChHHHHHHH-HHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCC-CC------------C----CCCCCccCHH
Q 012412 25 GHINPLLQFS-RRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDG-YD------------E----GGYAQAESIE 86 (464)
Q Consensus 25 GH~~p~l~la-~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~------------~----~~~~~~~~~~ 86 (464)
|++.-.+.+| +.+...|++|.+.-.. ..+.+++ .-.+.++.++-. ++ . -++.....-.
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~---~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~ 112 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKS---RLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPAL 112 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHH---hCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHH
Confidence 7777788888 4466678988776664 4555552 223555555411 10 0 0122211112
Q ss_pred HHHHHHHH--------hCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecc
Q 012412 87 AYLERFWQ--------IGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQ 143 (464)
Q Consensus 87 ~~~~~~~~--------~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~ 143 (464)
..+..+.. .........++++.+. .+|+||+|. .+...|+++|++.+.+.+.
T Consensus 113 ~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~--G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 113 RRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR--GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHhCCceEEEEecCHHHHHHHHHHHHHC--CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 22222222 2224567778888774 489999995 3567899999999988664
No 358
>PRK07206 hypothetical protein; Provisional
Probab=40.87 E-value=1.1e+02 Score=30.23 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=24.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
.+++++-.... -..+++++.++|+++..++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 35777765433 3468999999999998888653
No 359
>PRK07004 replicative DNA helicase; Provisional
Probab=40.77 E-value=1.1e+02 Score=30.87 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=34.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~~ 57 (464)
|++...|+.|-..-++.+|...+ +.|+.|.|++-+...+.+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 56778889999999999998876 4699999999887665543
No 360
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=40.76 E-value=94 Score=32.23 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.8
Q ss_pred ceeccCCh------hHHHHHHHhCCcEeccC
Q 012412 355 CFVTHCGW------NSTMEALSLGVPMVAMP 379 (464)
Q Consensus 355 ~vI~HgG~------~s~~eal~~GvP~v~~P 379 (464)
++++|.|- +.+.||..-++|+|++.
T Consensus 67 v~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 67 VVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 38888874 46799999999999974
No 361
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=40.71 E-value=47 Score=30.45 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=31.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
.|.|+.-||-|-..-+..||..|+++|++|.++=-..
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4667778888999999999999999999999885543
No 362
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=40.68 E-value=2e+02 Score=24.64 Aligned_cols=102 Identities=10% Similarity=0.022 Sum_probs=54.2
Q ss_pred hhHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccCh
Q 012412 265 TEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQ 344 (464)
Q Consensus 265 ~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~ 344 (464)
..++-++|.++ + ..+|+-|. ..-.+..+.++..+.+..++=+.+.... ..+..+. .......++....
T Consensus 21 A~~lG~~la~~-g--~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~l~---~~~~~~~--~~~~~i~~~~~~~ 88 (178)
T TIGR00730 21 AAELGAYLAGQ-G--WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSGLF---SGEVVHQ--NLTELIEVNGMHE 88 (178)
T ss_pred HHHHHHHHHHC-C--CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchhhh---hhhccCC--CCCceEEECCHHH
Confidence 35555677663 2 45555553 2356777888777777776644432100 0000000 1123334444433
Q ss_pred H--HhhccccccceeccCChhHHHHHHH---------hCCcEeccC
Q 012412 345 L--EVLAHEATGCFVTHCGWNSTMEALS---------LGVPMVAMP 379 (464)
Q Consensus 345 ~--~ll~~~~~~~vI~HgG~~s~~eal~---------~GvP~v~~P 379 (464)
. .+...+|+ .++--||.||+-|.+. +.+|++++=
T Consensus 89 Rk~~m~~~sda-~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 89 RKAMMAELADA-FIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHhCCE-EEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 2 44445555 3455688999977632 499998864
No 363
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.68 E-value=56 Score=31.03 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
+++|.++-.|++| -+||..|++.||+|++-....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 3578888888887 479999999999999998753
No 364
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=40.61 E-value=1e+02 Score=30.11 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=25.7
Q ss_pred CcEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 13 LAHCLVLT-YPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 13 ~~~il~~~-~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
.++|.++- .|..|. .+|+.|.++||+|++....
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 46888876 566564 5789999999999999863
No 365
>PRK13337 putative lipid kinase; Reviewed
Probab=40.48 E-value=1.2e+02 Score=28.42 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=22.8
Q ss_pred cccccceeccCChhHHHHHHHh------CCcEeccCC
Q 012412 350 HEATGCFVTHCGWNSTMEALSL------GVPMVAMPQ 380 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~~------GvP~v~~P~ 380 (464)
..++ +|..||-||+.|++.. ..|+-++|.
T Consensus 57 ~~d~--vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 57 KFDL--VIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CCCE--EEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 3466 9999999999998762 347888995
No 366
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=40.46 E-value=3.3e+02 Score=26.91 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=73.3
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCc-EEEEec-------cChHHhh
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHK-SLVVSW-------CPQLEVL 348 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~n-v~~~~~-------~p~~~ll 348 (464)
++.+++.-.||.+. -..-.+++.|.+.+..+-++........+.....+. ..++ |+..-| +.+-++.
T Consensus 6 ~k~IllgvTGsiaa---~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~~l~~--l~~~~V~~~~~~~~~~~~~~hi~l~ 80 (399)
T PRK05579 6 GKRIVLGVSGGIAA---YKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQA--LSGNPVSTDLWDPAAEAAMGHIELA 80 (399)
T ss_pred CCeEEEEEeCHHHH---HHHHHHHHHHHhCCCEEEEEECHhHHHHHhHHHHHH--hhCCceEccccccccCCCcchhhcc
Confidence 34466666676652 133445566666677665555443222222221121 2222 332212 2333555
Q ss_pred ccccccceeccCChhHHH-------------HHHHhCCcEeccCCccc-------hhhHHHHHHhHhcceeecc------
Q 012412 349 AHEATGCFVTHCGWNSTM-------------EALSLGVPMVAMPQWSD-------QSTNAKYILDVWKTGLKFP------ 402 (464)
Q Consensus 349 ~~~~~~~vI~HgG~~s~~-------------eal~~GvP~v~~P~~~D-------Q~~na~rl~~~~G~g~~l~------ 402 (464)
..+|+ .+|-=+-.||+. -++++++|+++.|-.+. -..|..+|.+. |+-+.-+
T Consensus 81 ~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~ii~P~~g~la 158 (399)
T PRK05579 81 KWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSR-GVEIIGPASGRLA 158 (399)
T ss_pred cccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHC-CCEEECCCCcccc
Confidence 55665 244444444432 34667999999995543 23477777777 7665443
Q ss_pred --------CcCHHHHHHHHHHHhc
Q 012412 403 --------IVKRDAIADCISEILE 418 (464)
Q Consensus 403 --------~~~~~~l~~~i~~ll~ 418 (464)
-.++++|...+.+.+.
T Consensus 159 ~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 159 CGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHhh
Confidence 3567888888887774
No 367
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=40.39 E-value=1.8e+02 Score=26.48 Aligned_cols=84 Identities=21% Similarity=0.222 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcE-------EEEec-------cChHHhhc--cccccce
Q 012412 293 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKS-------LVVSW-------CPQLEVLA--HEATGCF 356 (464)
Q Consensus 293 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv-------~~~~~-------~p~~~ll~--~~~~~~v 356 (464)
...++.+.++|+ ....++++.+..++......+.=. .|-++ +.+.- +-...+++ .+|+ |
T Consensus 13 a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~--~Plr~~~~~~~~~av~GTPaDCV~lal~~l~~~~~pDL--V 87 (252)
T COG0496 13 APGIRALARALR-EGADVTVVAPDREQSGASHSLTLH--EPLRVRQVDNGAYAVNGTPADCVILGLNELLKEPRPDL--V 87 (252)
T ss_pred CHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccc--cCceeeEeccceEEecCChHHHHHHHHHHhccCCCCCE--E
Confidence 366788888888 567777777655443333222100 12122 22222 23446773 3676 7
Q ss_pred ec--------------cCChhHHHHHHHhCCcEeccCCc
Q 012412 357 VT--------------HCGWNSTMEALSLGVPMVAMPQW 381 (464)
Q Consensus 357 I~--------------HgG~~s~~eal~~GvP~v~~P~~ 381 (464)
|+ .|=.+-.+||..+|+|.+.+.+.
T Consensus 88 vSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 88 VSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred EeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 63 23345669999999999998875
No 368
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=40.36 E-value=1.6e+02 Score=25.46 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=42.4
Q ss_pred CcE-EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc-------cCCCCCCceEEEccCC
Q 012412 13 LAH-CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH-------RDSSSSSIPLEAISDG 73 (464)
Q Consensus 13 ~~~-il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~ 73 (464)
+.+ |+|+..++.-|-.-...+++.|++.|.+|.+++-....+... +.....+=.++.+|.+
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 346 457888877887778899999999999999988765433322 1233445677777754
No 369
>PRK13057 putative lipid kinase; Reviewed
Probab=40.33 E-value=1.2e+02 Score=28.25 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHH----
Q 012412 294 EEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEAL---- 369 (464)
Q Consensus 294 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal---- 369 (464)
.....+...|++.+..+......... ...++ + + ++....++ +|.-||-||+.|++
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t~~~~--~a~~~---------------~-~-~~~~~~d~--iiv~GGDGTv~~v~~~l~ 71 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPAEDPD--DLSEV---------------I-E-AYADGVDL--VIVGGGDGTLNAAAPALV 71 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEecCCHH--HHHHH---------------H-H-HHHcCCCE--EEEECchHHHHHHHHHHh
Confidence 45667778888877775544432110 00111 1 1 13345677 99999999999885
Q ss_pred HhCCcEeccCC
Q 012412 370 SLGVPMVAMPQ 380 (464)
Q Consensus 370 ~~GvP~v~~P~ 380 (464)
..++|+-++|.
T Consensus 72 ~~~~~lgiiP~ 82 (287)
T PRK13057 72 ETGLPLGILPL 82 (287)
T ss_pred cCCCcEEEECC
Confidence 34789999995
No 370
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=40.28 E-value=2.6e+02 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.5
Q ss_pred ccEEEeCCchhhHHHHHHHcCCccEEE
Q 012412 114 VDCIVYDSILLWALDVAKKFGLLGAPF 140 (464)
Q Consensus 114 ~DlVI~D~~~~~~~~~A~~~giP~v~~ 140 (464)
+|+||.+... ..+|+++|+|++.+
T Consensus 372 pdliig~~~~---~~~a~~~~ip~i~~ 395 (428)
T cd01965 372 VDLLIGNSHG---RYLARDLGIPLVRV 395 (428)
T ss_pred CCEEEECchh---HHHHHhcCCCEEEe
Confidence 4999999644 56888899999865
No 371
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=40.21 E-value=34 Score=32.12 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=28.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
|||+|+-.|..| ..+|..|.++||+|+++..+...+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~ 39 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALR 39 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHH
Confidence 578888666655 457888999999999998844444444
No 372
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=39.91 E-value=1.7e+02 Score=29.20 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=34.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCcccccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKS 55 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~ 55 (464)
-|+++..+|.|-..-+..||..|. ++|.+|.+++...++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 345777788899999999999997 58999999999876653
No 373
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.82 E-value=65 Score=31.29 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=37.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (464)
.=|+|+-.-+.|-..-+-.+|..+.++|+.+-+++.+.+++-.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 3456888889999999999999999999999999998876643
No 374
>PRK08589 short chain dehydrogenase; Validated
Probab=39.75 E-value=86 Score=28.75 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=23.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|.++++.++ |.+ =.++|+.|+++|++|.++...
T Consensus 7 k~vlItGas-~gI--G~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITGAS-TGI--GQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEECCC-chH--HHHHHHHHHHCCCEEEEEeCc
Confidence 345555444 333 368899999999999998764
No 375
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=39.66 E-value=1.8e+02 Score=27.30 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=32.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
..|.+.-.++.|-..-+..++..|.++|++|.++......
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3445677778899999999999999999999998876443
No 376
>PRK05636 replicative DNA helicase; Provisional
Probab=39.57 E-value=52 Score=33.57 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=68.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCccccccccc--CCCCCCceEEEccCC-CCCCCCCCccCHHHHHHH
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSLHR--DSSSSSIPLEAISDG-YDEGGYAQAESIEAYLER 91 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~ 91 (464)
|++...++.|-..-.+.+|...+ ++|..|.|++-+...+.+.. .....++....+..+ +.. +....+......
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~---~e~~~~~~a~~~ 344 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDE---DAWEKLVQRLGK 344 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCH---HHHHHHHHHHHH
Confidence 56677888899999999998776 46899999998866554431 011223333222221 111 111111112221
Q ss_pred HHHh----------CcHHHHHHHHHhcCCCCCccEEEeCCchhh-------------------HHHHHHHcCCccEEEec
Q 012412 92 FWQI----------GPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 92 ~~~~----------~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~~ 142 (464)
+... ....++..++.+... .++|+||.|.+... ...+|.+++||++.++.
T Consensus 345 l~~~~l~I~d~~~~ti~~I~~~~r~~~~~-~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQ 423 (505)
T PRK05636 345 IAQAPIFIDDSANLTMMEIRSKARRLKQK-HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQ 423 (505)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 1110 011234444444443 34699999986422 12378999999998765
Q ss_pred c
Q 012412 143 Q 143 (464)
Q Consensus 143 ~ 143 (464)
.
T Consensus 424 L 424 (505)
T PRK05636 424 L 424 (505)
T ss_pred c
Confidence 3
No 377
>PRK12342 hypothetical protein; Provisional
Probab=39.46 E-value=54 Score=29.98 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=23.4
Q ss_pred ccEEEeCCch------hhHHHHHHHcCCccEEEecc
Q 012412 114 VDCIVYDSIL------LWALDVAKKFGLLGAPFLTQ 143 (464)
Q Consensus 114 ~DlVI~D~~~------~~~~~~A~~~giP~v~~~~~ 143 (464)
||+|++...+ ..+..+|+.+|+|++.+...
T Consensus 110 ~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 110 FDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 6999985433 44899999999999986543
No 378
>PRK05858 hypothetical protein; Provisional
Probab=39.38 E-value=1e+02 Score=31.79 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=20.1
Q ss_pred eeccCCh------hHHHHHHHhCCcEeccC
Q 012412 356 FVTHCGW------NSTMEALSLGVPMVAMP 379 (464)
Q Consensus 356 vI~HgG~------~s~~eal~~GvP~v~~P 379 (464)
++.|.|- +.+.+|-..++|+|++.
T Consensus 71 ~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 71 AVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 7878774 47799999999999975
No 379
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=39.15 E-value=53 Score=30.43 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=31.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
+|.|+.-||-|-..-+..||..|+++|++|.++=-..
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dp 39 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDP 39 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCC
Confidence 5777888888999999999999999999998885443
No 380
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=39.14 E-value=1.6e+02 Score=24.78 Aligned_cols=29 Identities=21% Similarity=-0.024 Sum_probs=22.2
Q ss_pred ccEEEeCCch---hhHHHHHHHcCCccEEEec
Q 012412 114 VDCIVYDSIL---LWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 114 ~DlVI~D~~~---~~~~~~A~~~giP~v~~~~ 142 (464)
+|+|+..... ..+..+|.++|.|++.-..
T Consensus 84 p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 84 PSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred CCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 4999986544 5588899999999887433
No 381
>PRK13236 nitrogenase reductase; Reviewed
Probab=39.07 E-value=62 Score=30.40 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=33.7
Q ss_pred CcEEE-EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 13 LAHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 13 ~~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
.++++ |..-||-|-..-...||-.|+++|++|.++=.....
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~ 46 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKA 46 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 44666 777778899999999999999999999999654443
No 382
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=38.98 E-value=4.4e+02 Score=26.86 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=82.3
Q ss_pred CceEEEEeccccc-CCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhh---hhccCCCcEEEEeccChH---Hhhcc
Q 012412 278 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFS---DETLTSHKSLVVSWCPQL---EVLAH 350 (464)
Q Consensus 278 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~nv~~~~~~p~~---~ll~~ 350 (464)
..+++...|.... -..+++...+.-+-+.+.++++.-.+ ...+.+.+. ++ .+.++.+.-|.... .+++-
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~g--d~~le~~~~~la~~--~~~~~~~~i~~~~~la~~i~ag 368 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTG--DPELEEALRALASR--HPGRVLVVIGYDEPLAHLIYAG 368 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecC--cHHHHHHHHHHHHh--cCceEEEEeeecHHHHHHHHhc
Confidence 3456666666553 34566666666555555665544333 223333332 33 45677777665533 78888
Q ss_pred ccccceeccCC-hh-HHHHHHHhCCcEeccCCcc--chhhHHHH--HHhHhcceeeccCcCHHHHHHHHHHHh
Q 012412 351 EATGCFVTHCG-WN-STMEALSLGVPMVAMPQWS--DQSTNAKY--ILDVWKTGLKFPIVKRDAIADCISEIL 417 (464)
Q Consensus 351 ~~~~~vI~HgG-~~-s~~eal~~GvP~v~~P~~~--DQ~~na~r--l~~~~G~g~~l~~~~~~~l~~~i~~ll 417 (464)
+|+=++-+.+- .| |=++|+.+|++-|+.+..+ |.-....- .... |.|......+++.+..++.+.+
T Consensus 369 aD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~-gtGf~f~~~~~~~l~~al~rA~ 440 (487)
T COG0297 369 ADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGV-GTGFLFLQTNPDHLANALRRAL 440 (487)
T ss_pred CCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCc-eeEEEEecCCHHHHHHHHHHHH
Confidence 88833444432 23 4478999999888888654 32221111 5667 8999998449999999999887
No 383
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=38.88 E-value=30 Score=29.71 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
..+++++-.+|.|-..=..++++++.++|+.|.|+......+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 457888888888988889999999999999999999887777666
No 384
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=38.67 E-value=90 Score=27.97 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=23.3
Q ss_pred ccEEEe-CCch-hhHHHHHHHcCCccEEEecch
Q 012412 114 VDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 114 ~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (464)
||+||. |+.. ..+..=|..+|||+|.+.-+.
T Consensus 156 Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 156 PDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCC
Confidence 488886 6554 556777999999999876655
No 385
>PRK04946 hypothetical protein; Provisional
Probab=38.44 E-value=19 Score=30.92 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH-HhhccccccceeccCChhHH
Q 012412 294 EEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATGCFVTHCGWNST 365 (464)
Q Consensus 294 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~-~ll~~~~~~~vI~HgG~~s~ 365 (464)
+.+..++..+...+.+.+.+++|.....+... +..|+.|. .+++-+++ =-+|||.|.+
T Consensus 110 ~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~------------V~~wL~q~~~V~af~~A--~~~~GG~GA~ 168 (181)
T PRK04946 110 QELGALIAACRKEHVFCACVMHGHGKHILKQQ------------TPLWLAQHPDVMAFHQA--PKEWGGDAAL 168 (181)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHH------------HHHHHcCCchhheeecc--CcccCCceEE
Confidence 34444555555568877777776544333222 34688766 77777777 7899999864
No 386
>PRK07236 hypothetical protein; Provisional
Probab=38.36 E-value=38 Score=33.13 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=30.6
Q ss_pred CCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 8 PTSCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 8 ~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|++++.++|+|+-.|-.| +.+|..|+++|++|+++-..
T Consensus 1 ~~~~~~~~ViIVGaG~aG-----l~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGG-----LFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCCCeEEEECCCHHH-----HHHHHHHHhCCCCEEEEecC
Confidence 467778899998776434 78899999999999999854
No 387
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=38.26 E-value=89 Score=28.68 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=23.3
Q ss_pred ccEEEe-CCch-hhHHHHHHHcCCccEEEecch
Q 012412 114 VDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 114 ~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (464)
||+||. |+.. ..+..=|..+|||+|.+.-+.
T Consensus 158 Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 158 PDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred CCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 488886 5544 556777999999999876654
No 388
>PRK07773 replicative DNA helicase; Validated
Probab=38.22 E-value=1e+02 Score=34.09 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=69.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCccccccccc-C-CCCCCceEEEccCCCCCCCCCCccCHHHHHHHH
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHK-GIKVTLVTTRFFYKSLHR-D-SSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~~~~-~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (464)
|++...|+.|-..-.+.+|...+.+ |..|.|++-+...+.+.. . ....++....+..+.-. .............+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~g~l~--~~~~~~~~~a~~~l 297 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRSGRMS--DDDWTRLARAMGEI 297 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCC--HHHHHHHHHHHHHH
Confidence 5678888999999999999988754 899999998876665541 0 11223333322211100 00111111111111
Q ss_pred HH----------hCcHHHHHHHHHhcCCCCCccEEEeCCchhh-------------------HHHHHHHcCCccEEEecc
Q 012412 93 WQ----------IGPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFLTQ 143 (464)
Q Consensus 93 ~~----------~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~~~ 143 (464)
.. .....++..++.+... .+.|+||.|.+... .-.+|++++||++.++..
T Consensus 298 ~~~~i~i~d~~~~~i~~i~~~~r~~~~~-~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQL 376 (886)
T PRK07773 298 SEAPIFIDDTPNLTVMEIRAKARRLRQE-ANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALSQL 376 (886)
T ss_pred hcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEeccc
Confidence 11 0112233334444433 34699999986422 234688999999997765
Q ss_pred h
Q 012412 144 S 144 (464)
Q Consensus 144 ~ 144 (464)
+
T Consensus 377 n 377 (886)
T PRK07773 377 S 377 (886)
T ss_pred C
Confidence 4
No 389
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=38.19 E-value=2.3e+02 Score=26.43 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
.++|+++-.|..|. .+|+.|+++||.|.++......+...
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~ 42 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLK 42 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHH
Confidence 45788887777665 47899999999999998877655443
No 390
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.13 E-value=59 Score=30.08 Aligned_cols=53 Identities=15% Similarity=0.301 Sum_probs=37.5
Q ss_pred cccccceeccCChhHHHHHHHh-CCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcC
Q 012412 350 HEATGCFVTHCGWNSTMEALSL-GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 419 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~~-GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~ 419 (464)
.+|+ +|+=||-||++.++.. .+|++.+-. - .+|..- +.+.+++.+++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~--------G------~lGFL~-~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM--------G------GLGFLT-EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC--------C------CCccCc-ccCHHHHHHHHHHHHcC
Confidence 5788 9999999999999873 557664431 0 112111 56788899999999876
No 391
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=38.10 E-value=37 Score=33.45 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
+++||++.-.|+. ...-...+.+.|.++|++|.++.++...+.+.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 4568887655554 55578899999999999999999987766665
No 392
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=38.06 E-value=2.4e+02 Score=27.72 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=65.6
Q ss_pred EEeccChHHhhccccccceeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeecc---------CcCHHH
Q 012412 338 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP---------IVKRDA 408 (464)
Q Consensus 338 ~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~---------~~~~~~ 408 (464)
+.+...-.++|+.+|+ +||- =++.+.|.+..-+||+..-...||.... . |...+ --+.++
T Consensus 274 vs~~~di~dll~~sDi--LITD-ySSv~fdf~~l~KPiify~~D~~~y~~~-----r---g~~~d~~~~~Pg~~~~~~~~ 342 (388)
T COG1887 274 VSDNADINDLLLVSDI--LITD-YSSVIFDFMLLDKPIIFYTYDLEQYDEL-----R---GFYLDYKFEAPGEVVETQEE 342 (388)
T ss_pred cccchhHHHHHhhhCE--EEee-chHHHHHHHHhcCcEEEEecChHHHHhh-----h---hhhhhHHhcCCccccccHHH
Confidence 3356778899999999 9996 4456699999999999875556666211 1 22222 457788
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Q 012412 409 IADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNI 450 (464)
Q Consensus 409 l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 450 (464)
+.++|...+.++ ..+.++.+...+.+... +.|.++.+.+
T Consensus 343 li~ai~~~~~~~--~~~~~k~~~~~~~~~~~-~dg~ss~ri~ 381 (388)
T COG1887 343 LIDAIKPYDEDG--NYDLEKLRVFNDKFNSY-EDGRSSERIL 381 (388)
T ss_pred HHHHHHhhhccc--chhHHHHHHHHHhhccc-ccccHHHHHH
Confidence 888888888754 24566666666666654 3444444333
No 393
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=38.05 E-value=74 Score=25.04 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=33.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
||++...++.|-..-...+++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888999999999999999999999999888765
No 394
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.75 E-value=1.2e+02 Score=27.31 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=21.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|.++++.++ |.+- .++|+.|.++|++|.++..
T Consensus 8 k~~lItGas-~gIG--~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 8 KVALITGGT-RGIG--RAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred CEEEEeCCC-ChHH--HHHHHHHHHCCCEEEEEeC
Confidence 344555544 3333 5689999999999988754
No 395
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=37.55 E-value=45 Score=29.37 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=31.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
=|++.-+|+.|-......||++|.+++|+|.-++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 356777889999999999999999999999877663
No 396
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=37.52 E-value=2.6e+02 Score=23.88 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=31.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
+-|+|.-..|.|--.-+..|++.|...|++|.+...+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~ 41 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPG 41 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45677778888999999999999999999998776653
No 397
>PRK06756 flavodoxin; Provisional
Probab=37.52 E-value=62 Score=26.55 Aligned_cols=37 Identities=3% Similarity=0.167 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCccChHHH-HHHHHHHHhCCCeEEEEeC
Q 012412 13 LAHCLVLTYPGQGHINPL-LQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~-l~la~~L~~rGh~V~~~~~ 49 (464)
+|||+++=.+.+||.--+ ..+++.|.++|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 357877666678998864 5568889889999877643
No 398
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=37.52 E-value=87 Score=32.61 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=19.9
Q ss_pred eeccCCh------hHHHHHHHhCCcEeccC
Q 012412 356 FVTHCGW------NSTMEALSLGVPMVAMP 379 (464)
Q Consensus 356 vI~HgG~------~s~~eal~~GvP~v~~P 379 (464)
++.|.|- +.+.+|...++|||++.
T Consensus 72 ~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 72 CTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 7878774 46699999999999975
No 399
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.37 E-value=2.7e+02 Score=23.97 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=30.3
Q ss_pred HHh--CCcEeccCCccc----h---hhHHHHHHhHhcceeecc--------------CcCHHHHHHHHHHHh
Q 012412 369 LSL--GVPMVAMPQWSD----Q---STNAKYILDVWKTGLKFP--------------IVKRDAIADCISEIL 417 (464)
Q Consensus 369 l~~--GvP~v~~P~~~D----Q---~~na~rl~~~~G~g~~l~--------------~~~~~~l~~~i~~ll 417 (464)
++. ++|+++.|-.+. . ..|..+|.+. |+=+.-+ ..+.++|.+.+.+.+
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~ 178 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLACGDEGYGALADIETILETIENTL 178 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHh
Confidence 445 899999996432 2 4577778777 7665444 234566666665554
No 400
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=37.22 E-value=2.4e+02 Score=24.88 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=33.4
Q ss_pred hhHHHHHhhcC--CCCceEEEEecccccCCHHHHHHHHHHHhhC-CCeEEEE
Q 012412 265 TEACMKWLNDR--AKESVVYVSYGSFVELKAEEMEELAWGLKSS-DQHFLWV 313 (464)
Q Consensus 265 ~~~~~~~l~~~--~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~ 313 (464)
.+.+.+++... ....++||...+. .+.+....+.++++++ +..+...
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 45666676654 3456888877665 4678888899999999 8766543
No 401
>PRK09165 replicative DNA helicase; Provisional
Probab=37.20 E-value=1.4e+02 Score=30.54 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=33.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC---------------CCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHK---------------GIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~r---------------Gh~V~~~~~~~~~~~~~ 57 (464)
|++...|+.|-..-++.+|...+.+ |..|.|++-+...+.+.
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 5677788889999999998888653 88999999987666554
No 402
>PRK06523 short chain dehydrogenase; Provisional
Probab=37.20 E-value=2.1e+02 Score=25.72 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCeEEEEeCc
Q 012412 31 LQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 31 l~la~~L~~rGh~V~~~~~~ 50 (464)
..+++.|+++|++|..+...
T Consensus 23 ~~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 23 AATVARLLEAGARVVTTARS 42 (260)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 68899999999999888754
No 403
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=36.95 E-value=90 Score=28.22 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=22.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|.++++.++ |-+- .++++.|+++|++|.++...
T Consensus 9 k~vlVtGas-~gIG--~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 9 KVVVVTGAA-QGIG--RGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CEEEEeCCC-chHH--HHHHHHHHHCCCEEEEEeCc
Confidence 445555544 3222 56899999999999887653
No 404
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=36.85 E-value=33 Score=32.18 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=24.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|||.++-.|..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 477777666555 5678889999999999997
No 405
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=36.73 E-value=1.4e+02 Score=29.83 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=25.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|+.+...+.. .+.+++.|.+-|-+|..+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 6666665554 889999999999999998775
No 406
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=36.63 E-value=1.3e+02 Score=31.31 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.9
Q ss_pred cceeccCChh------HHHHHHHhCCcEeccC
Q 012412 354 GCFVTHCGWN------STMEALSLGVPMVAMP 379 (464)
Q Consensus 354 ~~vI~HgG~~------s~~eal~~GvP~v~~P 379 (464)
+++++|.|-| .+.+|...++|+|++-
T Consensus 73 gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 73 GICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred EEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3388888844 6799999999999873
No 407
>PRK11519 tyrosine kinase; Provisional
Probab=36.56 E-value=5.8e+02 Score=27.54 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=31.0
Q ss_pred CcEEEEEc--CCCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 13 LAHCLVLT--YPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 13 ~~~il~~~--~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
..|++.++ .++-|-..-...||..|+..|++|.++-....
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 44666443 45668889999999999999999999976543
No 408
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=36.55 E-value=66 Score=33.45 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEec--------cChH--HhhccccccceeccCCh
Q 012412 293 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSW--------CPQL--EVLAHEATGCFVTHCGW 362 (464)
Q Consensus 293 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--------~p~~--~ll~~~~~~~vI~HgG~ 362 (464)
...-+.+++.|++.|.+.++-+.++....+-+.+. ..+.++++.. .-.- ..-.+..+ ++.|.|-
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~----~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v--~~vt~Gp 82 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAA----EHPRLRLHTHFDERSAGFLALGLAKASKRPVA--VIVTSGT 82 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHH----hCCCcEEEeecCcccHHHHHHHHHHhhCCCEE--EEECCcc
Confidence 44556677777777777777776654433333332 1123443322 1111 11112334 7777774
Q ss_pred ------hHHHHHHHhCCcEeccC
Q 012412 363 ------NSTMEALSLGVPMVAMP 379 (464)
Q Consensus 363 ------~s~~eal~~GvP~v~~P 379 (464)
+.+.||-..++|+|++.
T Consensus 83 G~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 83 AVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred HHHhhhHHHHHHhhcCCcEEEEE
Confidence 47799999999999985
No 409
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=36.38 E-value=1.1e+02 Score=28.11 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHh
Q 012412 28 NPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKM 107 (464)
Q Consensus 28 ~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 107 (464)
.-+..|++.|.++|++|.+++.+...+...+.... +. -.... ...... .+.+++.-+
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~--~~---~~~~~---~~~~~~---------------~l~e~~~li 196 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAAA--LG---GPRVV---NLAGKT---------------SLRELAALL 196 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHh--cC---CCccc---cCcCCC---------------CHHHHHHHH
Confidence 46889999999999999998887654444310000 00 00000 000001 122333333
Q ss_pred cCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecc
Q 012412 108 NGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQ 143 (464)
Q Consensus 108 ~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~ 143 (464)
.. .|++|+... ...++|..+|+|++.+...
T Consensus 197 ~~----~~l~I~~Ds--g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 197 AR----ADLVVTNDS--GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred Hh----CCEEEeeCC--HHHHHHHHcCCCEEEEECC
Confidence 21 489998533 4677888999999987654
No 410
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=36.28 E-value=66 Score=29.09 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=29.2
Q ss_pred CCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 8 PTSCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 8 ~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
+.....++||++.-..-==..-+-+....|.++||+|++++-
T Consensus 5 ~~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 5 PPMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 344567889865544434445566677778899999998874
No 411
>PRK06182 short chain dehydrogenase; Validated
Probab=36.22 E-value=1.2e+02 Score=27.80 Aligned_cols=32 Identities=25% Similarity=0.200 Sum_probs=21.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
.++++.++ |.+ =.++++.|.++||+|..+...
T Consensus 5 ~vlItGas-ggi--G~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 5 VALVTGAS-SGI--GKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred EEEEECCC-ChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 44444433 434 356889999999999887653
No 412
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=36.21 E-value=1.6e+02 Score=27.48 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHh
Q 012412 292 KAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL 371 (464)
Q Consensus 292 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~ 371 (464)
..+....+...+++.+..+.+...... ... .++. . ...-..+++ +|.-||-||+.|++..
T Consensus 17 ~~~~~~~i~~~l~~~~~~~~~~~t~~~-~~~-~~~~---------------~-~~~~~~~d~--ivv~GGDGTl~~v~~~ 76 (293)
T TIGR00147 17 DNKPLREVIMLLREEGMEIHVRVTWEK-GDA-ARYV---------------E-EARKFGVDT--VIAGGGDGTINEVVNA 76 (293)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEecCc-ccH-HHHH---------------H-HHHhcCCCE--EEEECCCChHHHHHHH
Confidence 345677778888887776544332211 001 1110 0 111234566 9999999999997643
Q ss_pred -----CCcEe-ccCC
Q 012412 372 -----GVPMV-AMPQ 380 (464)
Q Consensus 372 -----GvP~v-~~P~ 380 (464)
..|.+ ++|.
T Consensus 77 l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 77 LIQLDDIPALGILPL 91 (293)
T ss_pred HhcCCCCCcEEEEcC
Confidence 34444 4885
No 413
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=36.16 E-value=29 Score=31.58 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=22.5
Q ss_pred cccccceeccCChhHHHHHHHh----CCcEeccC
Q 012412 350 HEATGCFVTHCGWNSTMEALSL----GVPMVAMP 379 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~~----GvP~v~~P 379 (464)
.+|+ +|+-||-||++.|+.. ++|++.+-
T Consensus 25 ~~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 25 EADV--IVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred cCCE--EEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 3577 9999999999988654 68888655
No 414
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.04 E-value=2.3e+02 Score=25.63 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCCccEEEeCCchhh---HHHHHHHcCCccEE
Q 012412 98 QTLTELVEKMNGSDSPVDCIVYDSILLW---ALDVAKKFGLLGAP 139 (464)
Q Consensus 98 ~~l~~~~~~l~~~~~p~DlVI~D~~~~~---~~~~A~~~giP~v~ 139 (464)
..++.+++++.+ .++.+.|..+.. +..+|.+.|||++.
T Consensus 138 ~aM~~~m~~Lk~----r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 138 DAMEKLMEALKE----RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH----CCeEEEcccccccchhhhhHhhcCCceee
Confidence 456677777764 389999987743 56779999999875
No 415
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=35.99 E-value=33 Score=33.13 Aligned_cols=103 Identities=19% Similarity=0.106 Sum_probs=49.4
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCc
Q 012412 18 VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGP 97 (464)
Q Consensus 18 ~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (464)
|+..++.|...-...+++...++|+.|.++......+... --.+....-|....+ ...+-.+. .
T Consensus 15 iLG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del~dd~~----v~~v~~~GsP~v~~E----~lp~g~e~--------~ 78 (353)
T PF06032_consen 15 ILGSGGGGDPYIGRLMAEQALREGGPVRLVDPDELPDDDL----VVPVGMMGSPTVSVE----KLPSGDEA--------L 78 (353)
T ss_dssp HTTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG--SSE-----EEEEEEEE-HHHTT-----SS-HHHHH--------H
T ss_pred EEEEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHcCCCCc----EeEEEEeCCChHHhc----cCCCchHH--------H
Confidence 3456778988888888999999999999999876533322 001122222211111 11011111 1
Q ss_pred HHHHHHHHHhcCCCCCccEEEeCCc----hhhHHHHHHHcCCccEE
Q 012412 98 QTLTELVEKMNGSDSPVDCIVYDSI----LLWALDVAKKFGLLGAP 139 (464)
Q Consensus 98 ~~l~~~~~~l~~~~~p~DlVI~D~~----~~~~~~~A~~~giP~v~ 139 (464)
..++.+ ++... +++|.|++-.. ...++.+|.++|+|+|=
T Consensus 79 ~a~~~l-e~~~g--~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvD 121 (353)
T PF06032_consen 79 RAVEAL-EKYLG--RKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVD 121 (353)
T ss_dssp HHHHHH-HHHTT----EEEEE-SSSSCCHHHHHHHHHHHHT-EEES
T ss_pred HHHHHH-HHhhC--CCccEEeehhcCccchhHHHHHHHHhCCCEEc
Confidence 112222 33222 56899998553 25578889999999773
No 416
>PRK05920 aromatic acid decarboxylase; Validated
Probab=35.89 E-value=2.7e+02 Score=24.56 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=26.3
Q ss_pred HHHHhCCcEeccCCcc-ch---hhHHHHHHhHhcceeecc
Q 012412 367 EALSLGVPMVAMPQWS-DQ---STNAKYILDVWKTGLKFP 402 (464)
Q Consensus 367 eal~~GvP~v~~P~~~-DQ---~~na~rl~~~~G~g~~l~ 402 (464)
+++..++|+|+.|-.. .. ..|...|.+. |+-+.-+
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~-G~~ii~P 163 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEA-GAIILPA 163 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHC-CCEEeCC
Confidence 5788999999999633 33 3688888888 8776554
No 417
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.83 E-value=66 Score=28.43 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.7
Q ss_pred cEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 012412 14 AHCLVLTYPGQG--HINPLLQFSRRLQH 39 (464)
Q Consensus 14 ~~il~~~~~~~G--H~~p~l~la~~L~~ 39 (464)
||||+.-++.+| ..||...+++.|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 578876665553 58999999999954
No 418
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=35.75 E-value=3.4e+02 Score=29.50 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=64.1
Q ss_pred CCCcEEEE-eccChH--Hhhccccccceecc-----CChhHHHHHHHhCCcEeccCC-ccchhhHHHHHHhHhcceeec-
Q 012412 332 TSHKSLVV-SWCPQL--EVLAHEATGCFVTH-----CGWNSTMEALSLGVPMVAMPQ-WSDQSTNAKYILDVWKTGLKF- 401 (464)
Q Consensus 332 ~~~nv~~~-~~~p~~--~ll~~~~~~~vI~H-----gG~~s~~eal~~GvP~v~~P~-~~DQ~~na~rl~~~~G~g~~l- 401 (464)
.+++|.+. +|=-.. .|.+.||+=+..+. ||.+-+. |+..|++-+.+-. |.+...+. .. |.++--
T Consensus 545 ~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMK-A~~NG~LnlSvlDGww~E~~~g----~n-Gwaig~~ 618 (778)
T cd04299 545 FRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMK-AALNGGLNLSVLDGWWDEGYDG----EN-GWAIGDG 618 (778)
T ss_pred CCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHH-HHHcCCeeeecccCccccccCC----CC-ceEeCCC
Confidence 34567665 442222 78889999777788 7776555 4559999998775 22333343 22 333222
Q ss_pred ---c------CcCHHHHHHHHHHHhcCCchHHHHHH-----HHHHHHHHHHHHHc---CCCcHHHHHHHHHH
Q 012412 402 ---P------IVKRDAIADCISEILEGERGKELRRN-----AGKWRKLAKEAVAK---GGSSDSNIDEFVAS 456 (464)
Q Consensus 402 ---~------~~~~~~l~~~i~~ll~~~~~~~~~~~-----a~~l~~~~~~~~~~---gg~~~~~~~~~~~~ 456 (464)
. ..+++.|.+.|++-+.. .|.++ -.++.+.+++++.. --+..+-+.|+++.
T Consensus 619 ~~~~~~~~~d~~da~~Ly~~Le~~i~p----~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~ 686 (778)
T cd04299 619 DEYEDDEYQDAEEAEALYDLLENEVIP----LFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVER 686 (778)
T ss_pred ccccChhhcchhhHHHHHHHHHHHHHH----HHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 1 47888888888554331 22221 22344444444443 34445556665554
No 419
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=35.60 E-value=1.1e+02 Score=24.73 Aligned_cols=57 Identities=7% Similarity=-0.035 Sum_probs=41.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
+|++-+..+-+|-.----++..|.++|++|..+......+.+.+.....+..++.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS 57 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVS 57 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 477888889999999999999999999999998876554444321113345555554
No 420
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.36 E-value=76 Score=26.92 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 012412 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVT 48 (464)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~ 48 (464)
.+..+|++++.++ ..----+.+|+.|.++|++|+++.
T Consensus 23 ~~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 23 PKGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp CTT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEE
Confidence 3456888888776 334456889999999999999943
No 421
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=35.33 E-value=1.2e+02 Score=22.42 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=28.5
Q ss_pred EEEEEcCCCcc----ChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 15 HCLVLTYPGQG----HINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 15 ~il~~~~~~~G----H~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
.|-+=|+.+.| +.+++-.|-..|++.||+|.+.-++..
T Consensus 8 ~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d~ 49 (88)
T PF15092_consen 8 TIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIEDW 49 (88)
T ss_pred EEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEeccc
Confidence 34455555555 467899999999999999999887643
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=35.32 E-value=33 Score=34.86 Aligned_cols=43 Identities=14% Similarity=0.021 Sum_probs=37.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
-+|+.-.+|.|-..-.+.++.+.+++|.+|.|++.+...+.+.
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLL 307 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHH
Confidence 3677888899999999999999999999999999987766665
No 423
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=35.29 E-value=70 Score=29.32 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=23.6
Q ss_pred ccEEEeCCch------hhHHHHHHHcCCccEEEecc
Q 012412 114 VDCIVYDSIL------LWALDVAKKFGLLGAPFLTQ 143 (464)
Q Consensus 114 ~DlVI~D~~~------~~~~~~A~~~giP~v~~~~~ 143 (464)
||+|++...+ ..+..+|+.+|+|++.+...
T Consensus 113 ~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 113 FDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 6999985433 46899999999999986553
No 424
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=35.27 E-value=2.4e+02 Score=22.75 Aligned_cols=67 Identities=15% Similarity=0.344 Sum_probs=40.3
Q ss_pred hHHhhccccccceeccCC-----hhHHHHH---HHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHH
Q 012412 344 QLEVLAHEATGCFVTHCG-----WNSTMEA---LSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISE 415 (464)
Q Consensus 344 ~~~ll~~~~~~~vI~HgG-----~~s~~ea---l~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ 415 (464)
-..++..||+ ||-.=| ||+.+.| ++.|+|++++-- +.-..-|.+. ..+-..---+++++.+.|+.
T Consensus 66 T~~li~~aDv--VVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~----~~~~HpLKEv-da~A~a~~et~~Qvv~iL~Y 138 (141)
T PF11071_consen 66 TRTLIEKADV--VVVRFGEKYKQWNAAFDAGYAAALGKPLITLHP----EELHHPLKEV-DAAALAVAETPEQVVEILRY 138 (141)
T ss_pred HHHHHhhCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEecc----hhccccHHHH-hHhhHhhhCCHHHHHHHHHH
Confidence 3477888999 887777 7777665 888999998652 2222223333 22111112367777777776
Q ss_pred Hh
Q 012412 416 IL 417 (464)
Q Consensus 416 ll 417 (464)
++
T Consensus 139 v~ 140 (141)
T PF11071_consen 139 VL 140 (141)
T ss_pred Hh
Confidence 65
No 425
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=35.27 E-value=2.2e+02 Score=24.23 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=20.9
Q ss_pred ccEEEeCCch---hhHHHHHHHcCCccEE
Q 012412 114 VDCIVYDSIL---LWALDVAKKFGLLGAP 139 (464)
Q Consensus 114 ~DlVI~D~~~---~~~~~~A~~~giP~v~ 139 (464)
+|+|++-... ..+..+|.++|.|++.
T Consensus 92 p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 92 PDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred CCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 4999986544 4578899999999876
No 426
>PRK13768 GTPase; Provisional
Probab=35.25 E-value=1.6e+02 Score=26.82 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=30.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
|++...+|.|-..-+..++..|..+|++|.++.....
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 4466667779999999999999999999999876543
No 427
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.23 E-value=97 Score=22.81 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=35.1
Q ss_pred EEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeCcc-cccccccCCCCCCceEEEc
Q 012412 15 HCLVLTYPGQ--GHINPLLQFSRRLQHKGIKVTLVTTRF-FYKSLHRDSSSSSIPLEAI 70 (464)
Q Consensus 15 ~il~~~~~~~--GH~~p~l~la~~L~~rGh~V~~~~~~~-~~~~~~~~~~~~~~~~~~i 70 (464)
+|.++|.+.. .+..-...+++.|+..|.+|.+-.... ....+. .....|+.|.-+
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~-~a~~~g~~~~ii 60 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFA-DADLIGIPYRIV 60 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchh-HHHhcCCCEEEE
Confidence 5777776653 566788999999999999998854332 222222 122456665544
No 428
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=35.22 E-value=63 Score=28.31 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
++||.+=..+|-|-...|+.=|+.|.++|.+|.+..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 5799999999999999999999999999999998776543
No 429
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=35.08 E-value=2.2e+02 Score=24.72 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=43.3
Q ss_pred CCccchhhHHHHHHhHhcceeecc--------------CcCHHHHH----HHHHHHhcCCchHHHHHHHHHHHHHHHHH-
Q 012412 379 PQWSDQSTNAKYILDVWKTGLKFP--------------IVKRDAIA----DCISEILEGERGKELRRNAGKWRKLAKEA- 439 (464)
Q Consensus 379 P~~~DQ~~na~rl~~~~G~g~~l~--------------~~~~~~l~----~~i~~ll~~~~~~~~~~~a~~l~~~~~~~- 439 (464)
|...||..--..+-+...+|+.-. .++++.++ +.|+++|.|+ .+-+|-.++.+.+.++
T Consensus 24 P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~---~IIRnr~KI~Avi~NA~ 100 (187)
T PRK10353 24 PETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDA---GIIRHRGKIQAIIGNAR 100 (187)
T ss_pred cCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc---hhHHhHHHHHHHHHHHH
Confidence 335676665444333327776432 68888887 7788999997 6555555555544433
Q ss_pred -----HHcCCCcHHHHHHH
Q 012412 440 -----VAKGGSSDSNIDEF 453 (464)
Q Consensus 440 -----~~~gg~~~~~~~~~ 453 (464)
.+++||-.+++=.+
T Consensus 101 ~~l~i~~e~gSf~~ylW~f 119 (187)
T PRK10353 101 AYLQMEQNGEPFADFVWSF 119 (187)
T ss_pred HHHHHHHhcCCHHHHHhhc
Confidence 23567766666443
No 430
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=34.93 E-value=51 Score=28.18 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=58.3
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccc
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGC 355 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~ 355 (464)
.++.+-.+.+|.++ +.+++.++.+|.+++..-....... .+.+ . ...+.+..++++.+|+
T Consensus 35 ~g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~-----~---~~~~~~l~ell~~aDi-- 94 (178)
T PF02826_consen 35 RGKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKPEE---GADE-----F---GVEYVSLDELLAQADI-- 94 (178)
T ss_dssp TTSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHHHH---HHHH-----T---TEEESSHHHHHHH-SE--
T ss_pred CCCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCChhh---hccc-----c---cceeeehhhhcchhhh--
Confidence 35668888888776 5677777788888775543321110 0111 1 1266788899999999
Q ss_pred eeccCChhHHHHHHHhCCcEeccCCccchhhHHHHHHhHhcceeec-c-----CcCHHHHHHHHH
Q 012412 356 FVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKF-P-----IVKRDAIADCIS 414 (464)
Q Consensus 356 vI~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l-~-----~~~~~~l~~~i~ 414 (464)
++.|.-.+. ......|+..+..+ +-|..+ . -.+.++|.++++
T Consensus 95 v~~~~plt~----------------~T~~li~~~~l~~m-k~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 95 VSLHLPLTP----------------ETRGLINAEFLAKM-KPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp EEE-SSSST----------------TTTTSBSHHHHHTS-TTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhcccc----------------ccceeeeeeeeecc-ccceEEEeccchhhhhhhHHHHHHh
Confidence 888754321 12456677777777 655333 2 455566665553
No 431
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=34.73 E-value=55 Score=27.40 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
+..+|+++-.|. .....++.|.+.||+|+++.+.
T Consensus 12 ~~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 456788875543 3477899999999999999654
No 432
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.50 E-value=1.1e+02 Score=25.49 Aligned_cols=78 Identities=13% Similarity=0.297 Sum_probs=52.5
Q ss_pred HHhCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHcCCCcHH
Q 012412 369 LSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDS 448 (464)
Q Consensus 369 l~~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 448 (464)
-.+|+| .|..-.+..+|+.+.+. .-++. ....+.+.+.+.+|+.|. +.-+-.+.+++..+.+. |....+
T Consensus 72 ~~CGkp---yPWt~~~L~aa~el~ee-~eeLs--~deke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K~---g~~v~~ 140 (158)
T PF10083_consen 72 HNCGKP---YPWTENALEAANELIEE-DEELS--PDEKEQFKESLPDLTKDT--PKTKVAATRFKKILSKA---GSIVGD 140 (158)
T ss_pred HhCCCC---CchHHHHHHHHHHHHHH-hhcCC--HHHHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHHH---hHHHHH
Confidence 345666 47777788888877776 33332 245688999999999774 47788888888888776 444455
Q ss_pred HHHHHHHHH
Q 012412 449 NIDEFVASL 457 (464)
Q Consensus 449 ~~~~~~~~l 457 (464)
.+.+++-.+
T Consensus 141 ~~~dIlVdv 149 (158)
T PF10083_consen 141 AIRDILVDV 149 (158)
T ss_pred HHHHHHHHH
Confidence 555555444
No 433
>PRK13054 lipid kinase; Reviewed
Probab=34.44 E-value=1.3e+02 Score=28.17 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccceeccCChhHHHHHHHh--
Q 012412 294 EEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL-- 371 (464)
Q Consensus 294 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~vI~HgG~~s~~eal~~-- 371 (464)
+.+..+...|++.+..+.+..... .....++. ........++ +|..||-||+.|++..
T Consensus 18 ~~~~~~~~~l~~~g~~~~v~~t~~--~~~a~~~a----------------~~~~~~~~d~--vvv~GGDGTl~evv~~l~ 77 (300)
T PRK13054 18 EELREAVGLLREEGHTLHVRVTWE--KGDAARYV----------------EEALALGVAT--VIAGGGDGTINEVATALA 77 (300)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecC--CCcHHHHH----------------HHHHHcCCCE--EEEECCccHHHHHHHHHH
Q ss_pred ------CCcEeccCC
Q 012412 372 ------GVPMVAMPQ 380 (464)
Q Consensus 372 ------GvP~v~~P~ 380 (464)
.+|+-++|.
T Consensus 78 ~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 78 QLEGDARPALGILPL 92 (300)
T ss_pred hhccCCCCcEEEEeC
No 434
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=34.35 E-value=2.7e+02 Score=27.01 Aligned_cols=119 Identities=14% Similarity=0.253 Sum_probs=66.4
Q ss_pred hHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEe-c---
Q 012412 266 EACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS-W--- 341 (464)
Q Consensus 266 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~-~--- 341 (464)
+++.+.++....+..-..++||... -.+++++.+.|.+.+.+..+... .+-..+. ..++...++ |
T Consensus 5 ~~~~~~~~~y~~~~~~i~~~~shsa------L~I~~gAkeeGf~ti~v~~~~~~-~~y~~~~----~~De~i~v~~~~di 73 (358)
T PRK13278 5 EEILEILKKYDLDNITIATIGSHSS------LQILKGAKKEGFRTIAICKKKRE-VFYKRFP----VADEFIIVDDFSDI 73 (358)
T ss_pred HHHHHHHHhcCcccceEEEEecccH------HHHHHHHHHCCCeEEEEEeCCCc-ccccccc----ccceEEEEcchhhh
Confidence 4466777665444556677887763 23788888999988877755421 1111111 235555555 5
Q ss_pred cCh---HHhhccccccceeccCChhHH--HHHHH-hCCcEeccC----CccchhhHHHHHHhHhcce
Q 012412 342 CPQ---LEVLAHEATGCFVTHCGWNST--MEALS-LGVPMVAMP----QWSDQSTNAKYILDVWKTG 398 (464)
Q Consensus 342 ~p~---~~ll~~~~~~~vI~HgG~~s~--~eal~-~GvP~v~~P----~~~DQ~~na~rl~~~~G~g 398 (464)
... ..+.+.-.+ +|.||..... .+-+. +|+|+..-+ ...|...--+.++++ |+-
T Consensus 74 ~~~~~~~~l~~~~~i--iIp~gs~v~y~~~d~l~~~~~p~~gn~~~l~~e~dK~~~k~~L~~a-GIp 137 (358)
T PRK13278 74 LNEAVQEKLREMNAI--LIPHGSFVAYLGLENVEKFKVPMFGNREILRWEADRDKERKLLEEA-GIR 137 (358)
T ss_pred cCHHHHHHHhhcCcE--EEeCCCcceeecHHHHHHCCCCcCCCHHHHHHhcCHHHHHHHHHHc-CCC
Confidence 222 244444555 8888764422 34444 888843322 334555555666666 544
No 435
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=34.34 E-value=3e+02 Score=26.22 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=53.1
Q ss_pred EEEEEcCCCcc----ChHHHHHHHHHHHhCCCeEEEEeCccccc--ccccCCCCCCceEEEccCCCCCCCCCCccCHHHH
Q 012412 15 HCLVLTYPGQG----HINPLLQFSRRLQHKGIKVTLVTTRFFYK--SLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAY 88 (464)
Q Consensus 15 ~il~~~~~~~G----H~~p~l~la~~L~~rGh~V~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (464)
.|++.+.++.. ...-+..|++.|.++|.+|.+++.+...+ ...+. ... .+...-. ...
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i--~~~-----~~~~~~~-~l~-------- 246 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEI--AQG-----CQTPRVT-SLA-------- 246 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHH--Hhh-----CCCCccc-ccC--------
Confidence 45555544321 13467789999988899999887654222 12200 000 0000000 000
Q ss_pred HHHHHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhhHHHHHHHcCCccEEEec
Q 012412 89 LERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLT 142 (464)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~ 142 (464)
....+.++..-+.. .|++|+.. ....++|..+|+|+|.++.
T Consensus 247 -------g~~sL~el~ali~~----a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 247 -------GKLTLPQLAALIDH----ARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred -------CCCCHHHHHHHHHh----CCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 11123344333332 48999862 3468899999999998754
No 436
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=34.31 E-value=38 Score=30.33 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 26 HINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 26 H~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|...|...|++|.++|++|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5778999999999999999998875
No 437
>PLN02891 IMP cyclohydrolase
Probab=34.16 E-value=2.8e+02 Score=28.38 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=34.7
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
+...+.|+.-+--.| +..+|+.|.+.|.+| ++++.-.+.+. ..|+.+..+.
T Consensus 20 ~~~krALISVsDKtg----i~~fAk~L~~~gveI--iSTgGTak~L~----e~Gi~v~~Vs 70 (547)
T PLN02891 20 SGKKQALISLSDKTD----LALLANGLQELGYTI--VSTGGTASALE----AAGVSVTKVE 70 (547)
T ss_pred ccccEEEEEEecccC----HHHHHHHHHHCCCEE--EEcchHHHHHH----HcCCceeeHH
Confidence 334556664444434 678999999987665 56666667777 6788888775
No 438
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=33.98 E-value=42 Score=28.70 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=29.7
Q ss_pred EEEEcCCCccChHH-HHHHHHHHHh-CCCeEEEEeCcccccccc
Q 012412 16 CLVLTYPGQGHINP-LLQFSRRLQH-KGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 16 il~~~~~~~GH~~p-~l~la~~L~~-rGh~V~~~~~~~~~~~~~ 57 (464)
|++.-.+ .||... ...+.+.|.+ +||+|.++.++...+.+.
T Consensus 2 i~~gitG-sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITG-SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEc-cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 4443333 377765 8899999984 599999999987776554
No 439
>PRK06180 short chain dehydrogenase; Provisional
Probab=33.61 E-value=1.5e+02 Score=27.25 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=22.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
+.++++.++ |.+ -..+++.|+++||+|..+...
T Consensus 5 ~~vlVtGas-ggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLITGVS-SGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEecCC-ChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 334444443 444 456788999999999988764
No 440
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.57 E-value=41 Score=33.02 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
.+||++.-.|+ +...-...+.+.|.+.|++|.++.++...+.+.
T Consensus 3 ~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 45888765555 444668999999999999999999987766665
No 441
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.51 E-value=95 Score=22.51 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVT 48 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~ 48 (464)
|++...++.|-..-...++..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666778999999999999999999998887
No 442
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=33.48 E-value=78 Score=28.02 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=19.9
Q ss_pred cEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 012412 14 AHCLVLTYPGQG--HINPLLQFSRRLQH 39 (464)
Q Consensus 14 ~~il~~~~~~~G--H~~p~l~la~~L~~ 39 (464)
|+||+..++.+| -.||...++++|.+
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 578876666554 48999999999955
No 443
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=33.31 E-value=1.9e+02 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=22.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|+++++.++ |.+- .++++.|+++|++|.++...
T Consensus 10 k~vlItG~s-~gIG--~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 10 KIIIVTGGS-SGIG--LAIVKELLANGANVVNADIH 42 (266)
T ss_pred CEEEEeCCC-ChHH--HHHHHHHHHCCCEEEEEeCC
Confidence 455566554 3332 56789999999999987653
No 444
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=33.25 E-value=66 Score=32.48 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=40.2
Q ss_pred hhccccccceeccCChhHHHHHHHh----CCcEeccCCccchhhHHHHHHhHhc-ceeeccCcCHHHHHHHHHHHhcCC
Q 012412 347 VLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWK-TGLKFPIVKRDAIADCISEILEGE 420 (464)
Q Consensus 347 ll~~~~~~~vI~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~rl~~~~G-~g~~l~~~~~~~l~~~i~~ll~~~ 420 (464)
+...+|+ +|+=||-||++.|... ++|++.+- . | +|. +.+++.+++.++|+++++++
T Consensus 259 l~~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN--------------~-G~LGF-Lt~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 259 LHTKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS--------------M-GSLGF-MTPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe--------------C-CCcce-ecccCHHHHHHHHHHHHcCC
Confidence 3346788 9999999999999774 56776442 1 2 232 22577899999999998763
No 445
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=33.20 E-value=40 Score=32.32 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
+|||.|+-.|..| ..+|..|+++||+|+++......+.+.
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~ 41 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELR 41 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHH
Confidence 3689888666655 457888999999999998754333333
No 446
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=32.91 E-value=2.1e+02 Score=28.58 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
+||||++..+++.| +|+++|++.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 46999988887666 688899888988888754
No 447
>PRK06114 short chain dehydrogenase; Provisional
Probab=32.81 E-value=2.1e+02 Score=25.70 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=23.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|+++++.++.| ==.++|+.|.++|++|.++...
T Consensus 9 k~~lVtG~s~g---IG~~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 9 QVAFVTGAGSG---IGQRIAIGLAQAGADVALFDLR 41 (254)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEeCC
Confidence 45556655443 3467899999999999988753
No 448
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=32.73 E-value=3.4e+02 Score=23.76 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=59.4
Q ss_pred cEEEE-EcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccccccc-CCCCCCceEEEccCCCCCCCCCCccCHHHHHHH
Q 012412 14 AHCLV-LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHR-DSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (464)
Q Consensus 14 ~~il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (464)
.++-| +.....|-..-++.-++....+|-+|.++.+.-....... ..+..|.....+. .. +-.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~-------i~---~~~----- 68 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVV-------IP---SDT----- 68 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCccccee-------cC---ChH-----
Confidence 34544 4444669999999999999999999999998644322220 0111222221111 00 111
Q ss_pred HHHhCcHHHHHHHHHhcCCCCCccEEEeCCchhh-------HHHHHHHcCCccEEE
Q 012412 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLW-------ALDVAKKFGLLGAPF 140 (464)
Q Consensus 92 ~~~~~~~~l~~~~~~l~~~~~p~DlVI~D~~~~~-------~~~~A~~~giP~v~~ 140 (464)
.+.+.+...... .+.|+|+.|...++ ...+|..+|+|++..
T Consensus 69 -------~i~~~i~~~~~~-~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 69 -------DIFDEIAALHEK-PPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICY 116 (201)
T ss_pred -------HHHHHHHhcccC-CCcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEe
Confidence 122223332221 22589999985432 466788999998874
No 449
>PRK06835 DNA replication protein DnaC; Validated
Probab=32.37 E-value=47 Score=31.74 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=36.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
..++|+-.+|.|-..=+.++|++|.++|+.|.|++.......+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 45777777788888888899999999999999999876655554
No 450
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=32.36 E-value=78 Score=20.05 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012412 405 KRDAIADCISEILEGERGKELRRNAGKWR 433 (464)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 433 (464)
+.+.|..||..+..+. .++++.|++++
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 4688999999999773 37887777653
No 451
>CHL00194 ycf39 Ycf39; Provisional
Probab=32.28 E-value=71 Score=30.19 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|||++. |+.|.+-. .|+++|.++||+|+.++..
T Consensus 1 MkIlVt--GatG~iG~--~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLGR--QIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHHH--HHHHHHHHCCCeEEEEEcC
Confidence 466664 44555443 4788899999999999864
No 452
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=32.20 E-value=1.2e+02 Score=30.70 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 28 NPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 28 ~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
.-...+|+.|.+.|++|. +++...+.++ ..|+.+..+.
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~----e~GI~v~~Vs 48 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLA----EAGVPVTEVS 48 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHH----HCCCeEEEee
Confidence 447789999999999994 4445666777 6778777764
No 453
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=32.11 E-value=3.4e+02 Score=24.46 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=32.5
Q ss_pred hHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEE
Q 012412 266 EACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWV 313 (464)
Q Consensus 266 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 313 (464)
+.+.+++. ..+.++||..-+......+..+.+.+++++++..+...
T Consensus 22 ~~~~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l 67 (233)
T PRK05282 22 PLIAELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGI 67 (233)
T ss_pred HHHHHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence 44556666 34568999876655555777888999999999885533
No 454
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=31.98 E-value=1.3e+02 Score=24.09 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=25.5
Q ss_pred cEEE-EEcCCCccChH--HHHHHHHHHHhCC-CeEEEEeC
Q 012412 14 AHCL-VLTYPGQGHIN--PLLQFSRRLQHKG-IKVTLVTT 49 (464)
Q Consensus 14 ~~il-~~~~~~~GH~~--p~l~la~~L~~rG-h~V~~~~~ 49 (464)
||+. +++.+.+|+=+ -.+.+|++|.+.| +.|.++.-
T Consensus 1 m~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly 40 (126)
T COG1553 1 MKYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLY 40 (126)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3555 58888888655 5667799999997 45655544
No 455
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.96 E-value=1.6e+02 Score=21.82 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHH
Q 012412 408 AIADCISEILEGERGKELRRNAGKWRKLAKEAVAK-GGSSDSNIDEFVAS 456 (464)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~-gg~~~~~~~~~~~~ 456 (464)
+....++++.+|. ..-+|.++.++........ |.+..-.....|.-
T Consensus 17 q~~~lL~~Ii~Dt---tVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsi 63 (93)
T COG1698 17 QVMQLLDEIIQDT---TVPRNIRRAAEEAKEALNNEGESPAVRAATAISI 63 (93)
T ss_pred HHHHHHHHHHccc---cccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Confidence 3444556777786 5555666555555554433 55554443333333
No 456
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=31.92 E-value=76 Score=29.31 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=30.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
.|.|..-||-|-..-+..||-.|+++|++|.++=-
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~ 37 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGC 37 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEec
Confidence 45566778889999999999999999999999843
No 457
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=31.91 E-value=99 Score=30.19 Aligned_cols=41 Identities=32% Similarity=0.348 Sum_probs=33.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccccccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (464)
+++.-.++.|--.-++.++..+..+|.+|.|++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45667778899999999999999999999999887554433
No 458
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=31.84 E-value=97 Score=28.02 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=23.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|.++++.++ |.+- ..+++.|.++|++|.++...
T Consensus 16 k~vlItGas-~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVTGGN-TGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEeCCC-chHH--HHHHHHHHHCCCEEEEEeCC
Confidence 444554443 4444 77899999999999988765
No 459
>PRK13604 luxD acyl transferase; Provisional
Probab=31.77 E-value=96 Score=29.28 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVT 48 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~ 48 (464)
+.+.+++..+..++-..+..+|+.|.++|+.|.-+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 345666677766776679999999999999987663
No 460
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=31.54 E-value=3.1e+02 Score=25.84 Aligned_cols=83 Identities=10% Similarity=0.077 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCeEEEE-eCcccccccccCCCCCCceEEEccCCCCCCCCCCccCHHHHHHHHHHhCcHHHHHHHHHh
Q 012412 29 PLLQFSRRLQHKGIKVTLV-TTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKM 107 (464)
Q Consensus 29 p~l~la~~L~~rGh~V~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 107 (464)
.+..|++.|.++|.+|.+. +++...+...+.. ... +. . . .. ....+.++..-+
T Consensus 198 ~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~--~~~-----~~-~-~--l~---------------g~~sL~elaali 251 (322)
T PRK10964 198 HWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLA--EGF-----PY-V-E--VL---------------PKLSLEQVARVL 251 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHH--ccC-----Cc-c-e--ec---------------CCCCHHHHHHHH
Confidence 5889999999899998875 4443333322100 000 00 0 0 00 011233443333
Q ss_pred cCCCCCccEEEeCCchhhHHHHHHHcCCccEEEecc
Q 012412 108 NGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQ 143 (464)
Q Consensus 108 ~~~~~p~DlVI~D~~~~~~~~~A~~~giP~v~~~~~ 143 (464)
.. .|++|+... ...++|..+|+|++.++..
T Consensus 252 ~~----a~l~I~nDS--Gp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 252 AG----AKAVVSVDT--GLSHLTAALDRPNITLYGP 281 (322)
T ss_pred Hh----CCEEEecCC--cHHHHHHHhCCCEEEEECC
Confidence 32 499998633 4688999999999987653
No 461
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=31.51 E-value=84 Score=27.13 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
|||.++ |.||+- +.+|-.|+++||+|+.+=...
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 567666 455554 677888999999999887653
No 462
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=31.39 E-value=2.8e+02 Score=26.73 Aligned_cols=49 Identities=18% Similarity=-0.043 Sum_probs=37.3
Q ss_pred hHHHHHhhcCCCCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCc
Q 012412 266 EACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRES 317 (464)
Q Consensus 266 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 317 (464)
..+..++.. .++++.|.+......++..+.+++.+++.+...++++|++
T Consensus 56 ~~v~~~~~~---GGT~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGD 104 (347)
T COG0205 56 EDVDDLINR---GGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGD 104 (347)
T ss_pred cchhHHHhc---CCeEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 444556664 2378887777666678888899999999999988888875
No 463
>PRK07109 short chain dehydrogenase; Provisional
Probab=31.23 E-value=2.6e+02 Score=26.64 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=22.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
++++++.++ |-+ =..+++.|+++|++|.++...
T Consensus 9 k~vlITGas-~gI--G~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 9 QVVVITGAS-AGV--GRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CEEEEECCC-CHH--HHHHHHHHHHCCCEEEEEECC
Confidence 344555443 333 256789999999999888753
No 464
>CHL00067 rps2 ribosomal protein S2
Probab=31.23 E-value=1.8e+02 Score=26.22 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=23.3
Q ss_pred ccEEEe-CCch-hhHHHHHHHcCCccEEEecch
Q 012412 114 VDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 114 ~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (464)
||+||. |+.. ..+..=|..+|||+|.+.-+.
T Consensus 162 P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 162 PDIVIIIDQQEEYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred CCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCC
Confidence 488876 5544 456777999999999887655
No 465
>PRK08265 short chain dehydrogenase; Provisional
Probab=31.22 E-value=2e+02 Score=26.03 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=22.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
|.++++.++. . -=.++++.|+++|++|+++...
T Consensus 7 k~vlItGas~-g--IG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 7 KVAIVTGGAT-L--IGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred CEEEEECCCC-h--HHHHHHHHHHHCCCEEEEEeCC
Confidence 4555555443 2 3467889999999999888653
No 466
>PRK08628 short chain dehydrogenase; Provisional
Probab=31.11 E-value=1.5e+02 Score=26.77 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=22.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (464)
+++++.++ |.+ -..+|+.|.++|++|.+++...
T Consensus 9 ~ilItGas-ggi--G~~la~~l~~~G~~v~~~~r~~ 41 (258)
T PRK08628 9 VVIVTGGA-SGI--GAAISLRLAEEGAIPVIFGRSA 41 (258)
T ss_pred EEEEeCCC-ChH--HHHHHHHHHHcCCcEEEEcCCh
Confidence 44444443 333 3578999999999998887543
No 467
>PRK09186 flagellin modification protein A; Provisional
Probab=31.10 E-value=2.1e+02 Score=25.65 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=21.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|.++++.++. .+ =..+|+.|.++|++|.+...
T Consensus 5 k~vlItGas~-gi--G~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 5 KTILITGAGG-LI--GSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CEEEEECCCc-hH--HHHHHHHHHHCCCEEEEEec
Confidence 3455555443 23 35679999999999988864
No 468
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=31.02 E-value=1.8e+02 Score=23.40 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChH--HhhccccccceeccCChhHHHHHHH----
Q 012412 297 EELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL--EVLAHEATGCFVTHCGWNSTMEALS---- 370 (464)
Q Consensus 297 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~--~ll~~~~~~~vI~HgG~~s~~eal~---- 370 (464)
..+.++..+.+.+++=+++..... . ++..+. .-.....++..... .++..+++ .++--||.||.-|...
T Consensus 2 ~a~~~ga~~~gG~viGi~p~~~~~-~-~~~~~~--~~~~~~~~~~~~~Rk~~m~~~sda-~I~lPGG~GTl~El~~~~~~ 76 (133)
T PF03641_consen 2 GAVAKGAKEAGGRVIGIIPEFLFP-F-EEPPNP--YVTELIIVDDMFERKEIMIESSDA-FIALPGGIGTLDELFEALTL 76 (133)
T ss_dssp HHHHHHHHHTTTTEEEEEETTGTT-T-TTTCCT--TSSEEEEESSHHHHHHHHHHHESE-EEEES-SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCeEEEEecCcccc-c-cccCCc--ccCceeEeCChHHHHHHHHHhCCE-EEEEecCCchHHHHHHHHHH
Confidence 345566666677766555432111 0 111100 11233444444433 44445554 4567788999977633
Q ss_pred -----hCC-cEeccC
Q 012412 371 -----LGV-PMVAMP 379 (464)
Q Consensus 371 -----~Gv-P~v~~P 379 (464)
+.+ |++++-
T Consensus 77 ~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 77 MQLGRHNKVPIILLN 91 (133)
T ss_dssp HHTTSSTS-EEEEEE
T ss_pred HhhccccCCCEEEeC
Confidence 234 988865
No 469
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=30.88 E-value=38 Score=27.41 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=26.5
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 25 GHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 25 GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
-.+.-.+=++..|.++||+|++++++.....++
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 345556778999999999999999998887776
No 470
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.65 E-value=78 Score=32.87 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.2
Q ss_pred cceeccCCh------hHHHHHHHhCCcEeccC
Q 012412 354 GCFVTHCGW------NSTMEALSLGVPMVAMP 379 (464)
Q Consensus 354 ~~vI~HgG~------~s~~eal~~GvP~v~~P 379 (464)
++++.|.|- +.+.+|...++|+|++.
T Consensus 68 gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 68 GVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred EEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 338888884 46799999999999974
No 471
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=30.53 E-value=62 Score=26.61 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=27.2
Q ss_pred EEEE-EcCCCccChHHHHHHHHHHHhC-CCeEEE
Q 012412 15 HCLV-LTYPGQGHINPLLQFSRRLQHK-GIKVTL 46 (464)
Q Consensus 15 ~il~-~~~~~~GH~~p~l~la~~L~~r-Gh~V~~ 46 (464)
||++ .+...-.|....++||+.|.+. |.+|.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 5664 6777789999999999999999 998874
No 472
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.52 E-value=88 Score=29.52 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccccCCCCCCceEEEcc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~i~ 71 (464)
+|||.|+-.|..| .++|+.|.++||+|++........ ..+......+.+..+|
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~~~~-~~~~~~~advvi~~vp 56 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRSGLS-LAAVLADADVIVSAVS 56 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCCCCC-HHHHHhcCCEEEEECC
Confidence 5789888666555 478999999999999887643211 1111114456666666
No 473
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=30.37 E-value=1.8e+02 Score=25.73 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 012412 31 LQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 31 l~la~~L~~rGh~V~~~~~ 49 (464)
..+++.|.++|+.|.+...
T Consensus 20 ~~la~~l~~~g~~v~~~~~ 38 (245)
T PRK12936 20 EEIARLLHAQGAIVGLHGT 38 (245)
T ss_pred HHHHHHHHHCCCEEEEEcC
Confidence 4578999999998877654
No 474
>PRK04940 hypothetical protein; Provisional
Probab=30.30 E-value=1.3e+02 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=24.2
Q ss_pred cEEEeCCch-hhHHHHHHHcCCccEEEecch
Q 012412 115 DCIVYDSIL-LWALDVAKKFGLLGAPFLTQS 144 (464)
Q Consensus 115 DlVI~D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (464)
+++|...+- .++..+|+++|+|.|.+.|..
T Consensus 62 ~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 62 PLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred cEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 688877655 889999999999999985543
No 475
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=30.29 E-value=90 Score=28.06 Aligned_cols=36 Identities=14% Similarity=0.382 Sum_probs=30.0
Q ss_pred cEEE-EEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 14 AHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 14 ~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|+++ ++-..+.|-..-+..|++.|.++|++|-++-+
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4566 55566779999999999999999999999954
No 476
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=30.26 E-value=1.1e+02 Score=24.34 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=26.5
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 17 LVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 17 l~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
+++..|..++-.-+..+++.|+++|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 455566667777899999999999999998843
No 477
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=30.21 E-value=86 Score=31.03 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=30.3
Q ss_pred CcEEE-EE-cCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 13 LAHCL-VL-TYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 13 ~~~il-~~-~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
.++|+ |. .-||-|-..-...||..|+.+|++|.++=..
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 45665 43 3467799999999999999999999988543
No 478
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.20 E-value=4e+02 Score=24.64 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
.-+|+|+..++.|-..-+..++..+..+|+.|.+++...++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 35788888888899999999999999899999999987553
No 479
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=29.97 E-value=6.6e+02 Score=26.25 Aligned_cols=142 Identities=12% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcCcccCcCChhhhhhccCCCcEEEEeccChHHhhccccccce
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCF 356 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~ll~~~~~~~v 356 (464)
+.+.|-|-+||.+ +...++.....|+.++..+-+.+.+. ...|+.+.+ |+-... -...++ +
T Consensus 409 ~~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sa--hr~~~~~~~------------~~~~~~-~~~~~v--~ 469 (577)
T PLN02948 409 GTPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSA--HRTPERMFS------------YARSAH-SRGLQV--I 469 (577)
T ss_pred CCCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECC--ccCHHHHHH------------HHHHHH-HCCCCE--E
Confidence 3455666666654 55666677777777776655555443 223332221 111111 123445 8
Q ss_pred eccCChhHHHH---HHHhCCcEeccCCccchh-hHHHHHHhH-hcceeecc------CcCHHHHHHHHHHHhcCCchHHH
Q 012412 357 VTHCGWNSTME---ALSLGVPMVAMPQWSDQS-TNAKYILDV-WKTGLKFP------IVKRDAIADCISEILEGERGKEL 425 (464)
Q Consensus 357 I~HgG~~s~~e---al~~GvP~v~~P~~~DQ~-~na~rl~~~-~G~g~~l~------~~~~~~l~~~i~~ll~~~~~~~~ 425 (464)
|.=.|...-+- |-..-+|++.+|....-. .....+.-. +--|+-+. ..++.-++..|-. +.|+ ++
T Consensus 470 i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~-~~~~---~~ 545 (577)
T PLN02948 470 IAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLG-ASDP---DL 545 (577)
T ss_pred EEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHh-cCCH---HH
Confidence 87766532222 233468999999854211 111111112 11132221 3344444433311 2454 88
Q ss_pred HHHHHHHHHHHHHHHH
Q 012412 426 RRNAGKWRKLAKEAVA 441 (464)
Q Consensus 426 ~~~a~~l~~~~~~~~~ 441 (464)
+++.+..++.+++.+.
T Consensus 546 ~~~~~~~~~~~~~~~~ 561 (577)
T PLN02948 546 LDKMEAYQEDMRDMVL 561 (577)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888886533
No 480
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=29.89 E-value=80 Score=24.76 Aligned_cols=37 Identities=19% Similarity=0.034 Sum_probs=31.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
++..+..+-.|......++..|.++|++|.++.....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCC
Confidence 5667777889999999999999999999999976433
No 481
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=29.85 E-value=65 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCeEEEEeCcc
Q 012412 31 LQFSRRLQHKGIKVTLVTTRF 51 (464)
Q Consensus 31 l~la~~L~~rGh~V~~~~~~~ 51 (464)
+..|..|+++|++|+++-...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 677889999999999998654
No 482
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.74 E-value=2.1e+02 Score=25.84 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 012412 31 LQFSRRLQHKGIKVTLVT 48 (464)
Q Consensus 31 l~la~~L~~rGh~V~~~~ 48 (464)
..+|+.|.++|++|.+..
T Consensus 22 ~~~a~~l~~~G~~vi~~~ 39 (256)
T PRK12859 22 AAICKELAEAGADIFFTY 39 (256)
T ss_pred HHHHHHHHHCCCeEEEEe
Confidence 789999999999998764
No 483
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.63 E-value=4.5e+02 Score=28.42 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=30.3
Q ss_pred CcEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeCccc
Q 012412 13 LAHCLVLTY--PGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (464)
Q Consensus 13 ~~~il~~~~--~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (464)
..|++.++. ++-|-..-...||..|+..|++|.++-....
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 446664433 3558888899999999999999999976543
No 484
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=29.61 E-value=73 Score=30.20 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=30.4
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 14 AHCLVLTYP---GQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 14 ~~il~~~~~---~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
|||.|+.-+ -.-+..-..+|.++.++|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 477765543 2245567889999999999999999997554
No 485
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.56 E-value=1.2e+02 Score=27.00 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCc
Q 012412 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (464)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (464)
.++++||+. |+.|++- ..|++.|.++||+|+.++..
T Consensus 4 ~~~~~vlIt--Gasg~iG--~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVT--GAARGLG--RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEe--CCCchHH--HHHHHHHHHCCCeEEEEeCC
Confidence 344567663 3445544 56788899999999776654
No 486
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=29.47 E-value=1e+02 Score=30.97 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=33.7
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHhCCCeEEEEeCccccc
Q 012412 14 AHCLVLTYP---GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (464)
Q Consensus 14 ~~il~~~~~---~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (464)
+|.+|++.| +-|--.-.-.|++.|.+||++|+..=-+.+..
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlN 44 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLN 44 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEeccccee
Confidence 367788877 44777889999999999999999998776654
No 487
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=29.41 E-value=11 Score=20.24 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=13.1
Q ss_pred ChhHHHHHHHhCCcEec
Q 012412 361 GWNSTMEALSLGVPMVA 377 (464)
Q Consensus 361 G~~s~~eal~~GvP~v~ 377 (464)
|.|++.-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888764
No 488
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=29.32 E-value=1.2e+02 Score=25.58 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHhhCC
Q 012412 276 AKESVVYVSYGSFVELKAEEMEELAWGLKSSD 307 (464)
Q Consensus 276 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~ 307 (464)
+.+..+|+++||....+.+.++..+..|.+.+
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 34557999999988667777888888787654
No 489
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=29.30 E-value=87 Score=28.01 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 13 LAHCLVLTYPGQ--GHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 13 ~~~il~~~~~~~--GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
+|+.+|++..-+ |-..-.-.|+++|+.+|++|.+.=+
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP 39 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKP 39 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECc
Confidence 356677666643 9999999999999999999987643
No 490
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.27 E-value=80 Score=28.70 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=22.4
Q ss_pred EEEEEcCCC-ccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 15 HCLVLTYPG-QGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 15 ~il~~~~~~-~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
|+++++..+ .+-+ =.++|+.|+++|++|.+...
T Consensus 8 k~~lItGa~~s~GI--G~a~a~~la~~G~~v~l~~r 41 (256)
T PRK07889 8 KRILVTGVITDSSI--AFHVARVAQEQGAEVVLTGF 41 (256)
T ss_pred CEEEEeCCCCcchH--HHHHHHHHHHCCCEEEEecC
Confidence 456666652 2222 35789999999999988764
No 491
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.14 E-value=86 Score=27.66 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=21.9
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 22 PGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 22 ~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
.+.|++- -+||+.|...||+|.+.+.....
T Consensus 7 ~GtGniG--~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 7 IGTGNIG--SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred eccChHH--HHHHHHHHhCCCeEEEecCCChh
Confidence 3445554 46788999999999999775443
No 492
>PRK12361 hypothetical protein; Provisional
Probab=29.00 E-value=3e+02 Score=28.50 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=23.4
Q ss_pred cccccceeccCChhHHHHHHH----hCCcEeccCC
Q 012412 350 HEATGCFVTHCGWNSTMEALS----LGVPMVAMPQ 380 (464)
Q Consensus 350 ~~~~~~vI~HgG~~s~~eal~----~GvP~v~~P~ 380 (464)
..++ +|.-||-||+.|++. .++|+-++|.
T Consensus 297 ~~d~--Viv~GGDGTl~ev~~~l~~~~~~lgiiP~ 329 (547)
T PRK12361 297 GADI--VIACGGDGTVTEVASELVNTDITLGIIPL 329 (547)
T ss_pred CCCE--EEEECCCcHHHHHHHHHhcCCCCEEEecC
Confidence 3466 999999999999863 4688888995
No 493
>PRK00861 putative lipid kinase; Reviewed
Probab=29.00 E-value=1.1e+02 Score=28.73 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=23.7
Q ss_pred ccccccceeccCChhHHHHHHH----hCCcEeccCC
Q 012412 349 AHEATGCFVTHCGWNSTMEALS----LGVPMVAMPQ 380 (464)
Q Consensus 349 ~~~~~~~vI~HgG~~s~~eal~----~GvP~v~~P~ 380 (464)
...++ +|.-||-||+.|++. .++|+-++|.
T Consensus 56 ~~~d~--vv~~GGDGTl~evv~~l~~~~~~lgviP~ 89 (300)
T PRK00861 56 RGAEL--IIASGGDGTLSAVAGALIGTDIPLGIIPR 89 (300)
T ss_pred cCCCE--EEEECChHHHHHHHHHHhcCCCcEEEEcC
Confidence 34567 999999999999853 4678888996
No 494
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=28.78 E-value=1.6e+02 Score=32.17 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=43.4
Q ss_pred CcCHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhhc
Q 012412 403 IVKRDAIADCISEIL------EGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACSK 461 (464)
Q Consensus 403 ~~~~~~l~~~i~~ll------~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~~ 461 (464)
..+.+.+.+..+.++ +|.+-.+-.++.++.++.+++++++|.+ .+.|++|+++|..+.
T Consensus 473 a~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~~gAs-deEI~~Lm~eLR~Am 536 (851)
T TIGR02302 473 ARTDDALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALERGAS-DEEIKQLTDKLRAAM 536 (851)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHH
Confidence 456777777777774 4543346788888888888888887765 669999999998764
No 495
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=28.73 E-value=4.9e+02 Score=26.30 Aligned_cols=84 Identities=14% Similarity=0.237 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEE-cCcccCcCChhhhhhccCCCcEEEE-eccChHHhhccccc-cceeccCChhHHHHH
Q 012412 292 KAEEMEELAWGLKSSDQHFLWVV-RESEQAKLPKKFSDETLTSHKSLVV-SWCPQLEVLAHEAT-GCFVTHCGWNSTMEA 368 (464)
Q Consensus 292 ~~~~~~~~~~al~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~nv~~~-~~~p~~~ll~~~~~-~~vI~HgG~~s~~ea 368 (464)
...++.-+-.|+.+-+.--||+- +++-...-..+....++.+.++.+. .-.....+|.+.|- =|+-+|-| .||
T Consensus 165 ~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~edfnpisll~~~dkvy~~ts~mg----fea 240 (671)
T COG3563 165 ASTFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQMG----FEA 240 (671)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccCceEEEecccCChHHHHHhcceeEEeecccc----HHH
Confidence 45667777788877776666654 4432222222333333366777765 33344456665553 22455555 499
Q ss_pred HHhCCcEeccC
Q 012412 369 LSLGVPMVAMP 379 (464)
Q Consensus 369 l~~GvP~v~~P 379 (464)
|.+|+|++...
T Consensus 241 ll~~~~~~~fg 251 (671)
T COG3563 241 LLCGKPLTTFG 251 (671)
T ss_pred HhcCCceeeec
Confidence 99999999854
No 496
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.71 E-value=96 Score=31.03 Aligned_cols=36 Identities=31% Similarity=0.228 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccc
Q 012412 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (464)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (464)
.+||+++-.+..| +++++.|.++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 6799999999988 99999999999999998865444
No 497
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.64 E-value=57 Score=30.23 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=38.9
Q ss_pred hHHhhccccccceeccCChhHHHHHHH----hCCcEeccCCccchhhHHHHHHhHhcceeeccCcCHHHHHHHHHHHhc
Q 012412 344 QLEVLAHEATGCFVTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 418 (464)
Q Consensus 344 ~~~ll~~~~~~~vI~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~rl~~~~G~g~~l~~~~~~~l~~~i~~ll~ 418 (464)
+.++...+++ +|+=||-||++.|+. .++|++.+-.. .+|... +.+++++.+.+.+++.
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~-~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT-DIDPKNAYEQLEACLE 97 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc-cCCHHHHHHHHHHHHh
Confidence 3445556788 999999999998755 36788765421 112211 4567777778877776
No 498
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=28.58 E-value=1.1e+02 Score=27.07 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=33.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCcccccccc
Q 012412 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (464)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (464)
-+++.-.++.|-..-++.++..-+++|+.|.|++.+...+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~ 60 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERIL 60 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 3556666788988888888888778899999999987665554
No 499
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=28.50 E-value=1.1e+02 Score=27.86 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=26.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 012412 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (464)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (464)
.+|++++.++. .--=-+.+|+.|.++|++|+++..
T Consensus 61 ~~V~VlcG~GN-NGGDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGN-NGGDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCC-CchhHHHHHHHHHHCCCeEEEEEc
Confidence 47888887764 222357889999999999999883
No 500
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=28.45 E-value=2e+02 Score=23.48 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=30.1
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHhhCCCeEEEEEcC
Q 012412 277 KESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRE 316 (464)
Q Consensus 277 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 316 (464)
...+|++.+||.-....+.++++++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4569999999988777888888888875 35777776643
Done!