BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012413
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTET 275
++GA+PALV LL + + ++ AL N++ N + + +AGA+ +LV +L + E
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 276 SKQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334
Q A AL ++A E ++ GA+P LV LL + + ++AL L + S
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 335 KERAV-SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVE 381
+ +AV AGA+ LV +L+ E + ++A+ LS +A G E ++A+ E
Sbjct: 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 220
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTET 275
++GA+PALV LL + + ++ AL N++ N + + +AGA+ +LV +L + E
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 195
Query: 276 SKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330
Q A AL ++A E K ++ GA+ L L + + + +K+A L KL S
Sbjct: 196 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTET 275
++GA+PALV LL + + ++ AL N++ N + + +AGA+ +LV +L + E
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 276 SKQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334
Q A AL ++A E ++ GA+P LV LL + + ++AL L + S
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 335 KERAVS-AGAVRPLVGMLAGQGEGMAEKAMVVLSLL 369
+++AV AGA+ L + + + E + ++A L L
Sbjct: 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTET 275
++GA+PALV LL + + ++ AL N++ N + + +AGA+ +LV +L + E
Sbjct: 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 153
Query: 276 SKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330
Q A AL ++A E K ++ GA+ L L + + + +K+A L KL S
Sbjct: 154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTET 275
++GA+PALV LL + + ++ AL N++ N + + +AGA+ +LV +L + E
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 276 SKQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334
Q A AL ++A E ++ GA+P LV LL + + ++AL L + S
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 335 KERAVS-AGAVRPLVGMLAGQGEGMAEKAMVVLSLL 369
+++AV AGA+ L + + + E + ++A L L
Sbjct: 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTET 275
++GA+PALV LL + + ++ AL N++ N + + +AGA+ +LV +L + E
Sbjct: 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 153
Query: 276 SKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330
Q A AL ++A E K ++ GA+ L L + + + +K+A L KL S
Sbjct: 154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTET 275
++GA+PALV LL + + ++ AL N++ N + + +AGA+ +LV +L + E
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 276 SKQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334
Q A AL ++A E ++ GA+P LV LL + + ++AL L + S
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 335 KERAVSAGAVRPLVGML 351
+++AV P + L
Sbjct: 172 QKQAVKEAGAEPALEQL 188
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 69/171 (40%), Gaps = 28/171 (16%)
Query: 221 VPALVPLLKCSDPWTQEHSVTALL-NLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQN 279
+PA+V LL + W + L+ NL+L N + A I LV +L + ++++
Sbjct: 359 IPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQRH 418
Query: 280 AAC---------------------ALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGK 318
A AL LA N+ I IP V LL Y S
Sbjct: 419 VAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLL-YSSVENI 477
Query: 319 KDALTTLYKLCSLKQNKERAVSA---GAVRPLVGMLAGQGEGMAEKAMVVL 366
+ + LC L Q+KE A + GA PL+ +L + EG A A VL
Sbjct: 478 QRVAAGV--LCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATYAAAVL 526
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 19/227 (8%)
Query: 215 IGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGT 273
I +SG +PALV +L +++T L NL L+ E K + A ++ +V +L
Sbjct: 99 IFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNN 158
Query: 274 ETSKQNAACALMSLAL-IEENKSSIGACGAIPPLVSL--------LIYGSSRGKKDALTT 324
L LA +E+K I A G LV + L++ +SR
Sbjct: 159 PKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSR-------V 211
Query: 325 LYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENG 384
L L NK V AG ++ L L + + + L L+ +A +E + E+
Sbjct: 212 LKVLSVCPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGL--ESV 269
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLV 431
+ LV + V A TL L + KN+ L+ + G+ L+
Sbjct: 270 LKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALI 316
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 5/242 (2%)
Query: 209 SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVY 267
S+N ++ + GAVP V LL S +E +V AL N++ + L+ GA+ L+
Sbjct: 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA 209
Query: 268 VLKTGTETSK-QNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY 326
L T+ S +NA L + + S A+P L L+ DA L
Sbjct: 210 QLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALS 269
Query: 327 KLCSLKQNKERAVSAGAVRP-LVGMLAGQGEGMAEKAM-VVLSLLAGIAEGREAIVEENG 384
L +K +AV V P LV +L + A+ V +++ G + I++
Sbjct: 270 YLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQA 329
Query: 385 IAALVEAIEDGSVKG-KEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKH 443
+ L+ + K K+ A T+ + A + ++ G I PLV L QT K
Sbjct: 330 LPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKK 389
Query: 444 KA 445
+A
Sbjct: 390 EA 391
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 5/242 (2%)
Query: 209 SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVY 267
S+N ++ + GAVP V LL S +E +V AL N++ + L+ GA+ L+
Sbjct: 112 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA 171
Query: 268 VLKTGTETSK-QNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY 326
L T+ S +NA L + + S A+P L L+ DA L
Sbjct: 172 QLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALS 231
Query: 327 KLCSLKQNKERAVSAGAVRP-LVGMLAGQGEGMAEKAM-VVLSLLAGIAEGREAIVEENG 384
L +K +AV V P LV +L + A+ V +++ G + I++
Sbjct: 232 YLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQA 291
Query: 385 IAALVEAIEDGSVKG-KEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKH 443
+ L+ + K K+ A T+ + A + ++ G I PLV L QT K
Sbjct: 292 LPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKK 351
Query: 444 KA 445
+A
Sbjct: 352 EA 353
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 224 LVPLLKCSDPWTQEHSVTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAAC 282
LV LL Q ++ A+ N+ + +T ++ NAG + +L +L + E K+ A
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363
Query: 283 ALMSLAL--IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK----E 336
+ ++ E+ ++ I A IPPLV LL + KK+A + S +
Sbjct: 364 TISNITAGNTEQIQAVIDA-NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 422
Query: 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGI 385
VS G ++PL +L + E V L L I + EA E G+
Sbjct: 423 YLVSQGCIKPLCDLLEIADNRIIE---VTLDALENILKMGEADKEARGL 468
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 224 LVPLLKCSDPWTQEHSVTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAAC 282
LV LL Q ++ A+ N+ + +T ++ NAG + +L +L + E K+ A
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 283 ALMSLAL--IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK----E 336
+ ++ E+ ++ I A IPPLV LL + KK+A + S +
Sbjct: 277 TISNITAGNTEQIQAVIDA-NLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIR 335
Query: 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGI 385
VS G ++PL +L + E V L L I + EA E G+
Sbjct: 336 YLVSQGCIKPLCDLLEIADNRIIE---VTLDALENILKMGEADKEARGL 381
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 224 LVPLLKCSDPWTQEHSVTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAAC 282
LV LL Q ++ A+ N+ + +T ++ NAG + +L +L + E K+ A
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 283 ALMSLAL--IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK----E 336
+ ++ E+ ++ I A IPPLV LL + KK+A + S +
Sbjct: 278 TISNITAGNTEQIQAVIDA-NLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIR 336
Query: 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGI 385
VS G ++PL +L + E V L L I + EA E G+
Sbjct: 337 YLVSQGCIKPLCDLLEIADNRIIE---VTLDALENILKMGEADKEARGL 382
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 224 LVPLLKCSDPWTQEHSVTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAAC 282
LV LL Q ++ A+ N+ + +T ++ NAG + +L +L + E K+ A
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 283 ALMSLAL--IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK----E 336
+ ++ E+ ++ I A IPPLV LL + KK+A + S +
Sbjct: 277 TISNITAGNTEQIQAVIDA-NLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIR 335
Query: 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGI 385
VS G ++PL +L + E V L L I + EA E G+
Sbjct: 336 YLVSQGCIKPLCDLLEIADNRIIE---VTLDALENILKMGEADKEARGL 381
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 224 LVPLLKCSDPWTQEHSVTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAAC 282
LV LL Q ++ A+ N+ + +T ++ NAG + +L +L + E K+ A
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 283 ALMSLAL--IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK----E 336
+ ++ E+ ++ I A IPPLV LL + KK+A + S +
Sbjct: 278 TISNITAGNTEQIQAVIDA-NLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIR 336
Query: 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGI 385
VS G ++PL +L + E V L L I + EA E G+
Sbjct: 337 YLVSQGCIKPLCDLLEIADNRIIE---VTLDALENILKMGEADKEARGL 382
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 224 LVPLLKCSDPWTQEHSVTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAAC 282
LV LL Q ++ A+ N+ + +T ++ NAG + +L +L + E K+ A
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 275
Query: 283 ALMSLAL--IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK----E 336
+ ++ E+ ++ I A IPPLV LL + KK+A + S +
Sbjct: 276 TISNITAGNTEQIQAVIDA-NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 334
Query: 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGI 385
VS G ++PL +L + E V L L I + EA E G+
Sbjct: 335 YLVSQGCIKPLCDLLEIADNRIIE---VTLDALENIIKMGEADKEARGL 380
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 224 LVPLLKCSDPWTQEHSVTALLNLSLHENNKT-LITNAGAIKSLVYVLKTGTETSKQNAAC 282
LV LL Q ++ A+ N+ + +T ++ NAG + +L +L + E K+ A
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 275
Query: 283 ALMSLAL--IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK----E 336
+ ++ E+ ++ I A IPPLV LL + KK+A + S +
Sbjct: 276 TISNITAGNTEQIQAVIDA-NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 334
Query: 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGI 385
VS G ++PL +L + E V L L I + EA E G+
Sbjct: 335 YLVSQGCIKPLCDLLEIADNRIIE---VTLDALENILKMGEADKEARGL 380
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 215 IGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTE 274
IG+ AV L+ LK D W + + AL I + A++ L+ LK
Sbjct: 41 IGDERAVEPLIKALKDEDAWVRRAAADALGQ----------IGDERAVEPLIKALKDEDG 90
Query: 275 TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL 310
+Q+AA AL IG A+ PL+ L
Sbjct: 91 WVRQSAAVAL----------GQIGDERAVEPLIKAL 116
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 215 IGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTE 274
IG+ AV L+ LK D W + + AL I + A++ L+ LK
Sbjct: 46 IGDERAVEPLIKALKDEDAWVRRAAADALGQ----------IGDERAVEPLIKALKDEDG 95
Query: 275 TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL 310
+Q+AA AL IG A+ PL+ L
Sbjct: 96 WVRQSAAVAL----------GQIGDERAVEPLIKAL 121
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 95/241 (39%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLS-LHENNKTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + L+ GAI L+ +L +
Sbjct: 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLS 219
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 220 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 336
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + +
Sbjct: 337 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA 396
Query: 445 A 445
A
Sbjct: 397 A 397
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 117 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 176
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 177 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 233
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 234 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 293
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 294 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 353
Query: 445 A 445
A
Sbjct: 354 A 354
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 200
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 201 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAM-VVLSLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377
Query: 445 A 445
A
Sbjct: 378 A 378
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 200
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 201 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAM-VVLSLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377
Query: 445 A 445
A
Sbjct: 378 A 378
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 200
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 201 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAM-VVLSLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377
Query: 445 A 445
A
Sbjct: 378 A 378
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 127 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 186
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 187 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 243
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 244 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 303
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 304 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 363
Query: 445 A 445
A
Sbjct: 364 A 364
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 280 AACALMSLALIEENKSSIGACGAIPPLVSLL-----IYGSS---------RGKKDALTTL 325
A C LM L+ EE++ ++ G + + LL +YG + R ALT L
Sbjct: 52 AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 111
Query: 326 Y--------KLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--G 375
LCS+K G +R LV L + E + + VL L+ A+
Sbjct: 112 TFGDVANKATLCSMK---------GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 162
Query: 376 REAIVEENGIAALVEAIEDGSVKGKEFAVLT-LLQLCAESVKNRG-LLVREGGIPPLV 431
++ + E + AL+E + + +VL+ L L A +N+ + +G + LV
Sbjct: 163 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 220
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 365 VLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQL 410
VL+ + G+ E R +V+E G+ AL+ +G+ KGK A L ++
Sbjct: 518 VLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 91 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 150
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 151 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 207
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 208 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 267
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 268 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 327
Query: 445 A 445
A
Sbjct: 328 A 328
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 97 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 156
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 157 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 213
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 273
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 274 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 333
Query: 445 A 445
A
Sbjct: 334 A 334
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 280 AACALMSLALIEENKSSIGACGAIPPLVSLL-----IYGSS---------RGKKDALTTL 325
A C LM L+ EE++ ++ G + + LL +YG + R ALT L
Sbjct: 54 AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 113
Query: 326 Y--------KLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--G 375
LCS+K G +R LV L + E + + VL L+ A+
Sbjct: 114 TFGDVANKATLCSMK---------GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 164
Query: 376 REAIVEENGIAALVEAIEDGSVKGKEFAVLT-LLQLCAESVKNRG-LLVREGGIPPLV 431
++ + E + AL+E + + +VL+ L L A +N+ + +G + LV
Sbjct: 165 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 222
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 280 AACALMSLALIEENKSSIGACGAIPPLVSLL-----IYGSS---------RGKKDALTTL 325
A C LM L+ EE++ ++ G + + LL +YG + R ALT L
Sbjct: 52 AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 111
Query: 326 Y--------KLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--G 375
LCS+K G +R LV L + E + + VL L+ A+
Sbjct: 112 TFGDVANKATLCSMK---------GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 162
Query: 376 REAIVEENGIAALVEAIEDGSVKGKEFAVLT-LLQLCAESVKNRG-LLVREGGIPPLV 431
++ + E + AL+E + + +VL+ L L A +N+ + +G + LV
Sbjct: 163 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 220
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 35/178 (19%)
Query: 280 AACALMSLALIEENKSSIGACGAIPPLVSLL-----IYGSS---------RGKKDALTTL 325
A C LM L+ EE++ ++ G + + LL +YG + R ALT L
Sbjct: 168 AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227
Query: 326 Y--------KLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--G 375
LCS+K G +R LV L + E + + VL L+ A+
Sbjct: 228 TFGDVANKATLCSMK---------GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 278
Query: 376 REAIVEENGIAALVEAIEDGSVKGKEFAVLT-LLQLCAESVKNRG-LLVREGGIPPLV 431
++ + E + AL+E + + +VL+ L L A +N+ + +G + LV
Sbjct: 279 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 26/240 (10%)
Query: 210 DNRVLIGESGAVPALVPLLKCSDP----WTQEHSVTALLNLSLHENNKTLITNAGAIKSL 265
+++++I SG ALV +++ WT + L LS+ +NK I AG +++L
Sbjct: 309 ESKLIILASGGPQALVNIMRTYTYEKLLWT---TSRVLKVLSVCSSNKPAIVEAGGMQAL 365
Query: 266 VYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL------IYGSSRGKK 319
L ++ QN L +L+ + G G + LV LL + + G
Sbjct: 366 GLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 423
Query: 320 DALTTLYKLCSLKQNKERAVSAGAVRPLVGML--AGQGEGMAEKAMVVLSLLAGIAEGRE 377
LT C+ +NK G + LV + AG E + E A+ L L + E
Sbjct: 424 SNLT-----CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478
Query: 378 ----AIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVAL 433
A+ G+ +V+ + S A + L++ A N L +G IP LV L
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 23/170 (13%)
Query: 220 AVPALVPLLKCSDPWTQEHSVTALL-NLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQ 278
+P +V LL W + L+ NL+L N + GAI LV +L + +++
Sbjct: 489 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 548
Query: 279 NA--------------------AC--ALMSLALIEENKSSIGACGAIPPLVSLLIYGSSR 316
AC AL LA N+ I IP V LL
Sbjct: 549 RTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN 608
Query: 317 GKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL 366
++ A L +L K+ E + GA PL +L + EG+A A VL
Sbjct: 609 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 91 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 150
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 151 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 207
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 208 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 267
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 268 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 327
Query: 445 A 445
A
Sbjct: 328 A 328
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 125 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 184
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 185 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 241
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 242 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 301
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 302 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 361
Query: 445 A 445
A
Sbjct: 362 A 362
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 86 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 145
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 146 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 202
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 203 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 262
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 263 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 322
Query: 445 A 445
A
Sbjct: 323 A 323
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 86 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 145
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 146 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 202
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 203 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 262
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 263 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 322
Query: 445 A 445
A
Sbjct: 323 A 323
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 91 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 150
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 151 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 207
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 208 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 267
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 268 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 327
Query: 445 A 445
A
Sbjct: 328 A 328
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 21/244 (8%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN-NKTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GA+ L+ +L +
Sbjct: 92 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMS 151
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
S AC + +L+ + NK+ A+ P LV LL + D T +
Sbjct: 152 S---LACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLAD---TCW 205
Query: 327 KLCSLKQN-KER---AVSAGAVRPLVGMLAGQGEGMAEKAM-VVLSLLAGIAEGREAIVE 381
+ L ER V G V LV +L + A+ + +++ G E + +++
Sbjct: 206 AISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVID 265
Query: 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRA 441
+A + + ++ A T+ + A +V G +P LV++ +
Sbjct: 266 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKT 325
Query: 442 KHKA 445
+ +A
Sbjct: 326 QKEA 329
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 90 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 149
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 150 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 206
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 207 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 266
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 267 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 326
Query: 445 A 445
A
Sbjct: 327 A 327
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 15/241 (6%)
Query: 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KTLITNAGAIKSLVYVLKTGTET 275
+ GA+PA + LL E +V AL N++ + + L+ GAI L+ +L +
Sbjct: 90 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 149
Query: 276 SKQNAACALM-----SLALIEENKSSIGACGAI----PPLVSLLIYGSSRGKKDALTTLY 326
+ AC + +L+ + NK+ A+ P LV LL + D+ +
Sbjct: 150 T---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 206
Query: 327 KLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL-SLLAGIAEGREAIVEENG 384
L + E V G V LV +L + A+ + +++ G E + +++
Sbjct: 207 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 266
Query: 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444
+A + + ++ A T+ + A +V G +P LV + + + +
Sbjct: 267 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 326
Query: 445 A 445
A
Sbjct: 327 A 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,718,261
Number of Sequences: 62578
Number of extensions: 427203
Number of successful extensions: 998
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 97
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)