Query 012413
Match_columns 464
No_of_seqs 281 out of 1748
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:23:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.4E-30 3E-35 299.3 35.0 282 177-459 446-769 (2102)
2 PLN03200 cellulose synthase-in 100.0 3E-30 6.6E-35 296.4 34.4 352 96-457 97-562 (2102)
3 KOG0166 Karyopherin (importin) 100.0 2.8E-30 6.1E-35 263.2 28.6 342 102-456 71-438 (514)
4 KOG0166 Karyopherin (importin) 100.0 1.4E-30 3E-35 265.5 24.9 281 177-457 109-396 (514)
5 KOG4224 Armadillo repeat prote 100.0 5.3E-29 1.1E-33 239.1 22.1 276 178-454 127-405 (550)
6 KOG4224 Armadillo repeat prote 100.0 2.4E-28 5.2E-33 234.6 22.0 311 104-455 133-447 (550)
7 COG5064 SRP1 Karyopherin (impo 100.0 3.9E-28 8.4E-33 231.4 20.8 356 90-457 60-446 (526)
8 COG5064 SRP1 Karyopherin (impo 100.0 1.8E-27 4E-32 226.8 16.3 279 177-457 114-401 (526)
9 PF05804 KAP: Kinesin-associat 99.9 3.6E-19 7.9E-24 191.1 31.4 282 176-460 289-655 (708)
10 KOG4199 Uncharacterized conser 99.8 1.3E-18 2.7E-23 166.5 25.4 273 181-454 149-444 (461)
11 PF05804 KAP: Kinesin-associat 99.8 3.9E-18 8.5E-23 183.2 27.8 257 192-456 264-522 (708)
12 KOG2122 Beta-catenin-binding p 99.8 1E-18 2.2E-23 190.2 18.3 266 194-460 315-607 (2195)
13 KOG4199 Uncharacterized conser 99.8 1E-15 2.2E-20 146.8 27.2 270 185-458 115-407 (461)
14 KOG1048 Neural adherens juncti 99.7 5.6E-17 1.2E-21 170.9 19.7 280 176-456 232-597 (717)
15 PRK09687 putative lyase; Provi 99.7 2.9E-16 6.3E-21 153.7 21.7 256 96-451 21-279 (280)
16 PF04826 Arm_2: Armadillo-like 99.7 4E-15 8.7E-20 142.9 21.0 227 215-445 8-253 (254)
17 PF10508 Proteasom_PSMB: Prote 99.7 2.6E-14 5.7E-19 151.2 27.8 282 176-458 76-370 (503)
18 PRK09687 putative lyase; Provi 99.7 6.7E-15 1.5E-19 144.0 18.8 229 176-455 22-251 (280)
19 PF10508 Proteasom_PSMB: Prote 99.6 4.5E-13 9.8E-18 141.8 32.3 322 96-456 75-422 (503)
20 PF04826 Arm_2: Armadillo-like 99.6 5.6E-14 1.2E-18 135.0 22.3 222 176-402 11-252 (254)
21 KOG1048 Neural adherens juncti 99.6 1.6E-13 3.4E-18 145.0 25.5 278 176-454 274-684 (717)
22 PRK13800 putative oxidoreducta 99.6 7.9E-14 1.7E-18 157.3 23.1 272 96-451 619-896 (897)
23 KOG4500 Rho/Rac GTPase guanine 99.5 1.2E-12 2.6E-17 129.4 21.0 281 176-457 86-434 (604)
24 KOG2122 Beta-catenin-binding p 99.5 1.6E-13 3.5E-18 150.4 16.0 270 146-415 311-604 (2195)
25 PRK13800 putative oxidoreducta 99.5 6.1E-12 1.3E-16 142.1 25.7 229 176-452 620-865 (897)
26 cd00020 ARM Armadillo/beta-cat 99.5 3.2E-12 7E-17 108.0 15.6 118 337-454 2-120 (120)
27 KOG1222 Kinesin associated pro 99.4 6E-11 1.3E-15 118.8 22.6 281 176-459 303-668 (791)
28 cd00020 ARM Armadillo/beta-cat 99.4 7.8E-12 1.7E-16 105.7 14.3 116 296-411 2-119 (120)
29 cd00256 VATPase_H VATPase_H, r 99.4 1E-10 2.3E-15 119.5 23.7 278 178-455 102-426 (429)
30 KOG4500 Rho/Rac GTPase guanine 99.3 1.5E-10 3.2E-15 114.7 21.4 276 177-453 223-518 (604)
31 KOG0168 Putative ubiquitin fus 99.3 3.6E-10 7.8E-15 119.7 21.2 258 176-437 166-438 (1051)
32 PF03224 V-ATPase_H_N: V-ATPas 99.2 1.1E-09 2.3E-14 109.4 17.9 230 219-448 55-308 (312)
33 KOG2171 Karyopherin (importin) 99.2 5.6E-09 1.2E-13 114.6 24.3 372 74-457 6-507 (1075)
34 KOG2759 Vacuolar H+-ATPase V1 99.2 5.9E-09 1.3E-13 103.6 21.7 278 178-455 115-439 (442)
35 TIGR02270 conserved hypothetic 99.1 5.2E-09 1.1E-13 107.5 21.2 213 177-456 86-298 (410)
36 PF03224 V-ATPase_H_N: V-ATPas 99.1 3.2E-09 6.8E-14 106.1 17.6 214 188-401 68-303 (312)
37 PF01602 Adaptin_N: Adaptin N 99.1 9.3E-09 2E-13 109.8 20.2 254 176-454 113-369 (526)
38 PF01602 Adaptin_N: Adaptin N 99.1 6.5E-09 1.4E-13 111.0 18.8 259 178-455 153-445 (526)
39 KOG1222 Kinesin associated pro 99.0 4E-09 8.6E-14 106.0 15.0 199 233-434 277-476 (791)
40 KOG2160 Armadillo/beta-catenin 99.0 6.1E-08 1.3E-12 95.3 21.9 184 187-371 93-282 (342)
41 KOG0946 ER-Golgi vesicle-tethe 99.0 5.6E-08 1.2E-12 102.8 22.9 275 176-454 21-346 (970)
42 KOG2160 Armadillo/beta-catenin 99.0 9.9E-08 2.1E-12 93.8 20.6 183 271-453 94-281 (342)
43 TIGR02270 conserved hypothetic 98.9 8.6E-08 1.9E-12 98.5 20.8 216 176-456 53-269 (410)
44 KOG3678 SARM protein (with ste 98.9 4E-08 8.7E-13 98.5 16.3 267 176-455 179-453 (832)
45 KOG2023 Nuclear transport rece 98.9 4.1E-08 8.8E-13 102.1 16.8 272 173-454 124-463 (885)
46 COG1413 FOG: HEAT repeat [Ener 98.9 1.7E-07 3.8E-12 94.4 20.5 188 177-413 43-243 (335)
47 KOG2973 Uncharacterized conser 98.9 8.2E-07 1.8E-11 85.3 22.5 274 179-458 5-319 (353)
48 COG1413 FOG: HEAT repeat [Ener 98.9 7.3E-07 1.6E-11 89.8 23.7 184 176-408 73-269 (335)
49 KOG2171 Karyopherin (importin) 98.8 7.4E-07 1.6E-11 98.3 24.3 343 100-453 161-548 (1075)
50 KOG1293 Proteins containing ar 98.8 2.4E-07 5.3E-12 96.6 18.5 211 213-423 319-544 (678)
51 cd00256 VATPase_H VATPase_H, r 98.8 2.5E-06 5.5E-11 87.6 25.6 283 174-457 50-386 (429)
52 KOG1293 Proteins containing ar 98.8 6.7E-07 1.5E-11 93.4 19.9 269 188-460 388-675 (678)
53 KOG2023 Nuclear transport rece 98.8 4.4E-07 9.5E-12 94.6 18.3 274 175-456 172-507 (885)
54 KOG0946 ER-Golgi vesicle-tethe 98.8 1.4E-06 3.1E-11 92.4 22.1 334 93-453 17-398 (970)
55 PTZ00429 beta-adaptin; Provisi 98.7 7.2E-06 1.6E-10 90.1 25.8 253 177-455 32-286 (746)
56 PTZ00429 beta-adaptin; Provisi 98.7 4.4E-06 9.5E-11 91.8 23.6 264 174-457 65-329 (746)
57 KOG0168 Putative ubiquitin fus 98.6 6.5E-07 1.4E-11 95.6 15.7 211 221-436 169-391 (1051)
58 KOG3678 SARM protein (with ste 98.4 4.1E-06 8.9E-11 84.4 13.3 172 213-386 174-351 (832)
59 KOG4646 Uncharacterized conser 98.4 2.5E-06 5.5E-11 72.6 9.9 149 259-407 15-165 (173)
60 KOG0212 Uncharacterized conser 98.4 4.2E-05 9.1E-10 78.9 20.4 338 95-453 81-443 (675)
61 KOG4413 26S proteasome regulat 98.4 5E-05 1.1E-09 73.8 19.0 277 176-454 81-377 (524)
62 KOG4646 Uncharacterized conser 98.3 4E-06 8.7E-11 71.4 9.7 154 300-453 15-169 (173)
63 KOG2973 Uncharacterized conser 98.3 0.00018 3.9E-09 69.5 21.9 233 176-413 43-316 (353)
64 COG5369 Uncharacterized conser 98.3 4.7E-06 1E-10 85.3 11.3 260 194-453 406-740 (743)
65 PF05536 Neurochondrin: Neuroc 98.3 5.4E-05 1.2E-09 81.0 20.1 234 176-411 4-260 (543)
66 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00027 5.8E-09 72.1 23.8 272 178-453 26-363 (371)
67 KOG1241 Karyopherin (importin) 98.3 5.9E-05 1.3E-09 80.3 19.0 272 173-457 125-438 (859)
68 KOG0212 Uncharacterized conser 98.2 3.4E-05 7.3E-10 79.6 16.0 304 93-413 120-445 (675)
69 PF13646 HEAT_2: HEAT repeats; 98.2 4.5E-06 9.7E-11 66.6 7.5 86 221-326 1-88 (88)
70 PF05536 Neurochondrin: Neuroc 98.2 0.0001 2.2E-09 78.9 19.7 234 220-455 6-262 (543)
71 KOG0567 HEAT repeat-containing 98.2 5.1E-05 1.1E-09 71.8 15.0 60 383-453 218-279 (289)
72 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00098 2.1E-08 67.1 23.5 235 219-453 65-320 (442)
73 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00029 6.4E-09 71.8 20.3 253 200-455 6-270 (371)
74 KOG2734 Uncharacterized conser 98.1 0.00081 1.7E-08 67.9 22.6 236 198-435 105-371 (536)
75 KOG0213 Splicing factor 3b, su 98.1 8.3E-05 1.8E-09 78.9 16.3 341 96-461 714-1072(1172)
76 KOG4413 26S proteasome regulat 98.1 0.00024 5.3E-09 69.1 17.6 239 221-459 84-338 (524)
77 PF00514 Arm: Armadillo/beta-c 98.1 6.2E-06 1.4E-10 56.2 4.9 41 414-454 1-41 (41)
78 KOG1242 Protein containing ada 98.1 0.00021 4.5E-09 75.0 18.2 264 173-453 212-482 (569)
79 PF13646 HEAT_2: HEAT repeats; 98.1 1E-05 2.2E-10 64.5 6.9 86 179-285 1-88 (88)
80 KOG1241 Karyopherin (importin) 98.1 0.0002 4.2E-09 76.5 17.5 282 178-463 173-486 (859)
81 PF00514 Arm: Armadillo/beta-c 98.1 9.6E-06 2.1E-10 55.3 5.3 41 372-412 1-41 (41)
82 PF12348 CLASP_N: CLASP N term 98.1 3E-05 6.6E-10 73.6 10.6 181 186-371 16-206 (228)
83 KOG1062 Vesicle coat complex A 98.0 0.00057 1.2E-08 73.4 20.7 86 178-270 143-229 (866)
84 KOG1789 Endocytosis protein RM 98.0 0.00062 1.3E-08 74.8 20.7 258 176-436 1770-2141(2235)
85 KOG0567 HEAT repeat-containing 98.0 0.00027 6E-09 66.9 16.0 90 178-288 37-128 (289)
86 KOG1242 Protein containing ada 98.0 0.0007 1.5E-08 71.1 20.6 270 176-455 133-445 (569)
87 KOG1059 Vesicle coat complex A 98.0 0.00079 1.7E-08 71.6 20.8 184 176-371 143-365 (877)
88 COG5181 HSH155 U2 snRNP splice 98.0 0.00015 3.3E-09 75.5 15.2 271 173-459 600-875 (975)
89 KOG1517 Guanine nucleotide bin 98.0 0.00026 5.7E-09 77.7 17.5 224 194-417 487-737 (1387)
90 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00031 6.7E-09 68.1 15.9 228 226-453 156-427 (432)
91 KOG0213 Splicing factor 3b, su 98.0 0.00023 5E-09 75.6 15.9 150 303-455 801-955 (1172)
92 PF12348 CLASP_N: CLASP N term 97.9 9.6E-05 2.1E-09 70.1 11.6 184 229-416 17-210 (228)
93 KOG1061 Vesicle coat complex A 97.9 0.00036 7.7E-09 74.8 16.2 264 176-454 120-415 (734)
94 KOG2259 Uncharacterized conser 97.9 0.00015 3.2E-09 76.2 12.1 217 178-410 199-473 (823)
95 PF10165 Ric8: Guanine nucleot 97.8 0.0011 2.5E-08 69.4 18.9 258 198-456 2-339 (446)
96 KOG1517 Guanine nucleotide bin 97.8 0.00062 1.3E-08 74.9 16.7 219 236-454 487-732 (1387)
97 KOG2734 Uncharacterized conser 97.8 0.0094 2E-07 60.4 23.5 236 176-412 124-400 (536)
98 PF10165 Ric8: Guanine nucleot 97.8 0.0027 5.9E-08 66.5 20.0 228 187-414 42-339 (446)
99 COG5369 Uncharacterized conser 97.7 0.00023 4.9E-09 73.3 10.0 138 279-416 408-549 (743)
100 KOG1789 Endocytosis protein RM 97.6 0.0072 1.6E-07 66.8 20.7 263 192-455 1740-2077(2235)
101 COG5215 KAP95 Karyopherin (imp 97.6 0.0034 7.3E-08 65.4 17.2 274 173-455 129-438 (858)
102 PF13513 HEAT_EZ: HEAT-like re 97.6 0.00011 2.4E-09 53.3 4.7 55 233-287 1-55 (55)
103 KOG1240 Protein kinase contain 97.6 0.0032 7E-08 70.5 17.6 265 176-455 424-726 (1431)
104 KOG1943 Beta-tubulin folding c 97.5 0.0049 1.1E-07 68.4 18.1 258 174-454 338-611 (1133)
105 KOG2259 Uncharacterized conser 97.5 0.00041 8.8E-09 73.0 9.4 223 219-456 198-441 (823)
106 KOG1062 Vesicle coat complex A 97.5 0.0069 1.5E-07 65.4 18.6 213 228-455 116-380 (866)
107 KOG4151 Myosin assembly protei 97.5 0.0025 5.4E-08 68.8 15.4 243 209-456 494-743 (748)
108 KOG1058 Vesicle coat complex C 97.5 0.0081 1.7E-07 64.5 18.8 317 98-454 134-463 (948)
109 PF09759 Atx10homo_assoc: Spin 97.5 0.00061 1.3E-08 56.0 8.3 66 359-424 3-71 (102)
110 KOG1060 Vesicle coat complex A 97.5 0.019 4.2E-07 61.9 21.5 255 178-456 109-460 (968)
111 smart00185 ARM Armadillo/beta- 97.5 0.00026 5.6E-09 47.7 5.2 40 250-289 2-41 (41)
112 KOG1061 Vesicle coat complex A 97.5 0.0015 3.2E-08 70.2 13.3 261 175-456 47-310 (734)
113 PF13513 HEAT_EZ: HEAT-like re 97.4 0.0003 6.5E-09 51.0 4.8 55 397-452 1-55 (55)
114 COG5215 KAP95 Karyopherin (imp 97.4 0.0086 1.9E-07 62.4 16.8 260 188-457 189-482 (858)
115 COG5240 SEC21 Vesicle coat com 97.4 0.0035 7.5E-08 65.3 13.7 262 178-455 265-556 (898)
116 KOG1943 Beta-tubulin folding c 97.3 0.098 2.1E-06 58.5 25.2 310 95-453 338-704 (1133)
117 smart00185 ARM Armadillo/beta- 97.3 0.00053 1.1E-08 46.1 5.2 40 209-248 2-41 (41)
118 COG5181 HSH155 U2 snRNP splice 97.3 0.0016 3.6E-08 68.1 10.7 216 221-454 606-829 (975)
119 PF12717 Cnd1: non-SMC mitotic 97.3 0.017 3.7E-07 52.7 16.1 111 190-312 1-112 (178)
120 KOG1059 Vesicle coat complex A 97.3 0.01 2.3E-07 63.3 16.1 240 186-453 118-364 (877)
121 COG5096 Vesicle coat complex, 97.2 0.01 2.2E-07 64.9 16.0 140 175-327 53-192 (757)
122 KOG3036 Protein involved in ce 97.2 0.087 1.9E-06 49.8 19.9 179 232-411 92-290 (293)
123 KOG1824 TATA-binding protein-i 97.1 0.013 2.8E-07 64.4 15.3 268 181-457 9-289 (1233)
124 PF09759 Atx10homo_assoc: Spin 97.1 0.003 6.6E-08 51.9 8.2 65 317-381 2-70 (102)
125 PF04078 Rcd1: Cell differenti 97.1 0.02 4.3E-07 54.9 14.7 219 190-410 8-260 (262)
126 KOG1824 TATA-binding protein-i 97.1 0.012 2.7E-07 64.5 14.6 236 174-417 44-291 (1233)
127 COG5096 Vesicle coat complex, 97.0 0.012 2.7E-07 64.2 14.7 102 177-287 92-193 (757)
128 KOG1078 Vesicle coat complex C 97.0 0.03 6.5E-07 60.5 16.5 257 176-454 244-532 (865)
129 COG5231 VMA13 Vacuolar H+-ATPa 97.0 0.033 7.2E-07 54.4 15.3 231 180-411 152-427 (432)
130 KOG4151 Myosin assembly protei 97.0 0.0093 2E-07 64.5 12.8 199 249-452 493-697 (748)
131 PF12717 Cnd1: non-SMC mitotic 97.0 0.047 1E-06 49.8 15.9 91 232-331 1-93 (178)
132 KOG1060 Vesicle coat complex A 97.0 0.052 1.1E-06 58.8 18.0 246 182-453 40-315 (968)
133 KOG1240 Protein kinase contain 96.9 0.02 4.2E-07 64.5 15.1 224 221-456 424-687 (1431)
134 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0046 9.9E-08 50.6 8.0 92 194-287 3-94 (97)
135 KOG1058 Vesicle coat complex C 96.9 0.078 1.7E-06 57.2 18.9 246 166-440 122-411 (948)
136 PF04063 DUF383: Domain of unk 96.9 0.0069 1.5E-07 55.9 9.9 126 312-437 6-159 (192)
137 KOG1077 Vesicle coat complex A 96.9 0.11 2.3E-06 55.8 19.4 236 190-443 161-422 (938)
138 PF05004 IFRD: Interferon-rela 96.8 0.07 1.5E-06 53.2 17.2 193 262-457 45-260 (309)
139 KOG1248 Uncharacterized conser 96.7 0.35 7.5E-06 54.9 22.9 222 230-454 665-898 (1176)
140 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.36 7.7E-06 53.9 22.9 239 215-456 113-408 (802)
141 PF07814 WAPL: Wings apart-lik 96.7 0.12 2.5E-06 52.8 18.0 271 175-457 19-358 (361)
142 KOG4535 HEAT and armadillo rep 96.7 0.014 3E-07 59.9 10.5 263 190-458 268-563 (728)
143 KOG3036 Protein involved in ce 96.6 0.1 2.2E-06 49.4 15.2 147 192-339 94-256 (293)
144 PF12719 Cnd3: Nuclear condens 96.6 0.056 1.2E-06 53.6 14.7 171 177-355 26-210 (298)
145 KOG1077 Vesicle coat complex A 96.6 0.1 2.2E-06 56.0 16.9 259 178-455 112-399 (938)
146 PF06025 DUF913: Domain of Unk 96.5 0.1 2.3E-06 53.4 16.3 100 173-272 105-208 (379)
147 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.019 4.1E-07 46.9 8.7 91 359-453 3-96 (97)
148 PF08569 Mo25: Mo25-like; Int 96.5 0.61 1.3E-05 47.0 21.0 205 254-458 70-287 (335)
149 KOG0211 Protein phosphatase 2A 96.5 0.078 1.7E-06 58.6 15.8 338 96-453 274-624 (759)
150 PF11841 DUF3361: Domain of un 96.5 0.067 1.5E-06 47.6 12.5 123 295-417 5-136 (160)
151 PF11841 DUF3361: Domain of un 96.5 0.066 1.4E-06 47.6 12.4 119 335-453 4-130 (160)
152 KOG2062 26S proteasome regulat 96.5 0.053 1.1E-06 58.4 13.6 135 306-462 524-661 (929)
153 PF05004 IFRD: Interferon-rela 96.4 0.19 4.1E-06 50.2 16.9 189 223-412 47-257 (309)
154 KOG2062 26S proteasome regulat 96.4 0.11 2.4E-06 55.9 15.3 285 30-359 367-682 (929)
155 PF08569 Mo25: Mo25-like; Int 96.4 0.084 1.8E-06 53.1 14.0 196 176-373 75-285 (335)
156 PF11698 V-ATPase_H_C: V-ATPas 96.3 0.011 2.4E-07 49.9 6.3 72 176-247 42-114 (119)
157 KOG2032 Uncharacterized conser 96.3 0.38 8.1E-06 49.9 18.4 260 188-453 228-530 (533)
158 PF06025 DUF913: Domain of Unk 96.3 0.48 1E-05 48.6 19.5 99 215-313 101-208 (379)
159 KOG4535 HEAT and armadillo rep 96.2 0.0078 1.7E-07 61.6 5.9 190 188-412 402-603 (728)
160 KOG2025 Chromosome condensatio 96.2 0.41 8.8E-06 51.7 18.6 129 175-320 83-212 (892)
161 PF04078 Rcd1: Cell differenti 96.2 0.064 1.4E-06 51.4 11.6 148 192-340 65-228 (262)
162 PF04063 DUF383: Domain of unk 96.1 0.036 7.8E-07 51.2 8.9 122 231-352 7-157 (192)
163 PF12460 MMS19_C: RNAPII trans 96.0 0.22 4.7E-06 51.9 15.6 191 220-416 190-398 (415)
164 KOG1991 Nuclear transport rece 95.9 0.47 1E-05 53.0 18.0 286 172-463 405-720 (1010)
165 KOG2025 Chromosome condensatio 95.9 0.41 9E-06 51.6 16.6 104 219-326 85-189 (892)
166 PF08045 CDC14: Cell division 95.8 0.16 3.5E-06 48.9 12.4 96 359-454 108-207 (257)
167 KOG0211 Protein phosphatase 2A 95.8 0.17 3.8E-06 55.9 14.0 269 177-454 236-508 (759)
168 PF11698 V-ATPase_H_C: V-ATPas 95.7 0.024 5.2E-07 47.9 5.7 71 384-454 44-115 (119)
169 KOG4653 Uncharacterized conser 95.7 0.37 8.1E-06 53.0 15.8 219 224-452 732-962 (982)
170 PF05918 API5: Apoptosis inhib 95.5 0.52 1.1E-05 50.4 16.1 131 179-327 25-159 (556)
171 PRK14707 hypothetical protein; 95.5 2.7 5.8E-05 50.9 22.3 336 88-445 131-478 (2710)
172 PF14668 RICTOR_V: Rapamycin-i 95.3 0.092 2E-06 40.5 7.2 66 318-383 4-70 (73)
173 PF12719 Cnd3: Nuclear condens 95.2 0.48 1E-05 47.0 14.0 168 219-394 26-208 (298)
174 KOG4653 Uncharacterized conser 95.2 0.73 1.6E-05 50.8 15.9 221 179-410 729-962 (982)
175 KOG1788 Uncharacterized conser 95.2 0.42 9E-06 53.5 14.1 258 197-459 662-987 (2799)
176 COG5240 SEC21 Vesicle coat com 95.0 3 6.6E-05 44.2 19.1 220 221-453 266-515 (898)
177 PF08045 CDC14: Cell division 94.9 0.43 9.3E-06 46.0 12.2 96 317-412 107-207 (257)
178 KOG0915 Uncharacterized conser 94.9 0.38 8.2E-06 55.9 13.4 263 178-454 819-1110(1702)
179 KOG2274 Predicted importin 9 [ 94.9 1.6 3.5E-05 48.4 17.6 236 188-428 461-705 (1005)
180 KOG1248 Uncharacterized conser 94.8 1.9 4.1E-05 49.2 18.4 222 187-413 664-899 (1176)
181 PF02985 HEAT: HEAT repeat; I 94.8 0.054 1.2E-06 34.2 4.0 30 178-207 1-30 (31)
182 PF02985 HEAT: HEAT repeat; I 94.8 0.047 1E-06 34.5 3.7 29 427-455 2-30 (31)
183 KOG0915 Uncharacterized conser 94.7 2.2 4.9E-05 49.9 18.8 282 176-460 993-1312(1702)
184 PF12460 MMS19_C: RNAPII trans 94.6 0.7 1.5E-05 48.1 14.1 188 176-373 188-396 (415)
185 KOG2611 Neurochondrin/leucine- 94.6 3.1 6.6E-05 43.3 17.7 133 179-313 13-164 (698)
186 PF05918 API5: Apoptosis inhib 94.4 1.5 3.3E-05 46.9 15.7 127 224-368 28-159 (556)
187 PF11701 UNC45-central: Myosin 94.4 0.17 3.6E-06 45.3 7.5 145 220-368 4-156 (157)
188 KOG2611 Neurochondrin/leucine- 94.4 2.9 6.3E-05 43.5 16.9 186 224-411 16-224 (698)
189 KOG1967 DNA repair/transcripti 94.3 0.26 5.7E-06 54.5 10.1 186 178-367 816-1020(1030)
190 PF11701 UNC45-central: Myosin 94.3 0.67 1.4E-05 41.4 11.2 144 303-451 5-156 (157)
191 KOG1832 HIV-1 Vpr-binding prot 94.3 0.72 1.6E-05 50.9 13.0 126 334-459 593-778 (1516)
192 PRK14707 hypothetical protein; 94.2 8.6 0.00019 46.9 22.0 341 88-453 173-529 (2710)
193 PF06371 Drf_GBD: Diaphanous G 94.1 0.23 5E-06 45.3 8.2 77 335-411 100-186 (187)
194 KOG3665 ZYG-1-like serine/thre 94.1 1.4 3E-05 48.9 15.5 169 283-451 494-694 (699)
195 KOG3665 ZYG-1-like serine/thre 94.1 1.6 3.4E-05 48.5 15.8 135 324-458 494-658 (699)
196 KOG2999 Regulator of Rac1, req 94.1 1.4 3E-05 46.5 14.1 154 261-414 84-244 (713)
197 PF13764 E3_UbLigase_R4: E3 ub 94.0 6.1 0.00013 44.4 20.2 213 190-412 135-406 (802)
198 PF06371 Drf_GBD: Diaphanous G 94.0 0.54 1.2E-05 42.8 10.4 110 177-288 66-186 (187)
199 PF08324 PUL: PUL domain; Int 93.9 2.5 5.5E-05 40.9 15.6 207 74-299 16-241 (268)
200 KOG1820 Microtubule-associated 93.7 1.9 4E-05 48.4 15.5 186 178-370 254-442 (815)
201 KOG1967 DNA repair/transcripti 93.6 0.53 1.1E-05 52.2 10.7 149 259-409 866-1021(1030)
202 KOG2274 Predicted importin 9 [ 93.5 7.9 0.00017 43.3 19.2 179 188-371 502-689 (1005)
203 KOG2137 Protein kinase [Signal 93.5 1.2 2.6E-05 48.3 13.1 135 216-355 386-521 (700)
204 KOG2999 Regulator of Rac1, req 93.4 10 0.00022 40.2 19.0 173 221-393 85-266 (713)
205 PF14668 RICTOR_V: Rapamycin-i 93.2 0.36 7.9E-06 37.2 6.4 66 277-342 4-70 (73)
206 PF01347 Vitellogenin_N: Lipop 93.1 0.83 1.8E-05 50.0 11.6 200 174-405 392-615 (618)
207 KOG2956 CLIP-associating prote 92.7 7.1 0.00015 40.6 16.6 184 176-370 285-476 (516)
208 PF01347 Vitellogenin_N: Lipop 92.7 0.61 1.3E-05 51.0 10.0 167 261-451 396-586 (618)
209 COG5116 RPN2 26S proteasome re 92.7 1.7 3.7E-05 46.0 12.3 127 308-455 523-651 (926)
210 PF08324 PUL: PUL domain; Int 92.7 1.4 3.1E-05 42.7 11.5 184 264-447 67-267 (268)
211 smart00638 LPD_N Lipoprotein N 92.4 3.4 7.4E-05 44.8 15.1 132 302-451 394-542 (574)
212 KOG0414 Chromosome condensatio 92.3 0.93 2E-05 51.6 10.5 129 188-330 934-1064(1251)
213 KOG0414 Chromosome condensatio 92.2 1.2 2.5E-05 50.9 11.1 137 302-453 920-1063(1251)
214 KOG1020 Sister chromatid cohes 92.2 3.1 6.6E-05 48.8 14.5 161 197-369 797-958 (1692)
215 KOG1820 Microtubule-associated 92.0 2.9 6.2E-05 47.0 14.0 184 263-454 256-443 (815)
216 COG5656 SXM1 Importin, protein 91.8 18 0.00038 39.9 18.7 279 175-458 406-715 (970)
217 COG5116 RPN2 26S proteasome re 91.8 1.7 3.6E-05 46.1 10.9 121 259-395 550-674 (926)
218 KOG2032 Uncharacterized conser 91.4 2.2 4.7E-05 44.5 11.2 153 300-453 253-415 (533)
219 PF10363 DUF2435: Protein of u 91.4 0.6 1.3E-05 37.7 5.9 85 344-437 5-89 (92)
220 KOG1566 Conserved protein Mo25 91.3 12 0.00027 37.0 15.7 196 177-373 79-288 (342)
221 smart00638 LPD_N Lipoprotein N 91.3 3.6 7.9E-05 44.6 13.9 199 172-403 352-569 (574)
222 KOG4464 Signaling protein RIC- 91.3 19 0.0004 37.0 17.3 252 189-452 109-430 (532)
223 KOG1991 Nuclear transport rece 91.2 4.3 9.4E-05 45.6 14.0 160 196-361 391-566 (1010)
224 PF10363 DUF2435: Protein of u 90.9 0.98 2.1E-05 36.5 6.7 69 178-248 4-72 (92)
225 KOG1243 Protein kinase [Genera 90.4 3.1 6.6E-05 45.2 11.6 252 184-453 261-514 (690)
226 KOG2137 Protein kinase [Signal 90.3 13 0.00028 40.7 16.2 108 340-453 387-495 (700)
227 PF11707 Npa1: Ribosome 60S bi 90.2 9.2 0.0002 38.5 14.7 158 177-334 56-241 (330)
228 COG5218 YCG1 Chromosome conden 90.1 19 0.00042 38.6 16.8 109 175-291 89-198 (885)
229 COG5209 RCD1 Uncharacterized p 89.4 2.9 6.2E-05 39.3 9.2 148 190-338 113-276 (315)
230 PF12530 DUF3730: Protein of u 89.4 17 0.00038 34.5 15.2 132 185-330 9-151 (234)
231 KOG2933 Uncharacterized conser 89.3 1.9 4.2E-05 42.3 8.4 142 176-328 87-232 (334)
232 PF12031 DUF3518: Domain of un 88.7 1.6 3.4E-05 41.5 7.2 81 275-355 139-229 (257)
233 KOG2933 Uncharacterized conser 88.7 3.5 7.6E-05 40.6 9.7 141 302-451 89-231 (334)
234 PF12530 DUF3730: Protein of u 88.5 23 0.0005 33.7 16.5 137 221-371 2-151 (234)
235 KOG2956 CLIP-associating prote 88.0 18 0.0004 37.7 14.7 144 303-453 331-476 (516)
236 KOG1243 Protein kinase [Genera 87.9 3.7 8E-05 44.6 10.1 193 255-458 288-480 (690)
237 COG5209 RCD1 Uncharacterized p 87.6 9.8 0.00021 35.9 11.4 145 277-422 117-277 (315)
238 PF07814 WAPL: Wings apart-lik 87.4 33 0.00071 35.0 16.6 232 220-458 22-303 (361)
239 PF06685 DUF1186: Protein of u 87.0 26 0.00057 33.7 14.5 94 257-357 70-169 (249)
240 PF11707 Npa1: Ribosome 60S bi 86.9 36 0.00079 34.2 18.4 153 221-373 58-239 (330)
241 COG5218 YCG1 Chromosome conden 86.7 50 0.0011 35.6 18.0 101 259-363 90-191 (885)
242 KOG0301 Phospholipase A2-activ 85.8 13 0.00028 40.3 12.6 166 183-353 550-727 (745)
243 KOG1949 Uncharacterized conser 85.5 15 0.00033 40.1 12.9 176 262-444 176-360 (1005)
244 PF12031 DUF3518: Domain of un 85.2 2.5 5.5E-05 40.1 6.5 81 316-396 139-229 (257)
245 KOG1078 Vesicle coat complex C 85.0 69 0.0015 35.6 19.7 217 219-459 64-316 (865)
246 PF14726 RTTN_N: Rotatin, an a 84.6 8.4 0.00018 31.5 8.5 68 217-284 28-95 (98)
247 PF08167 RIX1: rRNA processing 84.4 12 0.00026 33.6 10.4 111 174-288 22-142 (165)
248 cd03569 VHS_Hrs_Vps27p VHS dom 84.1 5 0.00011 35.2 7.6 75 174-248 38-114 (142)
249 PF14500 MMS19_N: Dos2-interac 84.0 40 0.00086 32.8 14.5 210 182-412 4-237 (262)
250 cd03561 VHS VHS domain family; 83.9 7.7 0.00017 33.5 8.6 75 174-248 34-112 (133)
251 PF12830 Nipped-B_C: Sister ch 83.7 29 0.00063 31.7 12.9 142 219-372 8-168 (187)
252 KOG1949 Uncharacterized conser 83.3 25 0.00054 38.6 13.4 149 175-330 218-370 (1005)
253 PF13251 DUF4042: Domain of un 83.2 11 0.00023 34.6 9.5 137 235-372 2-175 (182)
254 COG5098 Chromosome condensatio 83.2 11 0.00023 41.2 10.7 131 189-332 908-1039(1128)
255 PF08506 Cse1: Cse1; InterPro 83.0 26 0.00056 35.9 13.4 207 192-407 111-370 (370)
256 smart00288 VHS Domain present 82.9 6.6 0.00014 33.9 7.8 75 174-248 34-111 (133)
257 KOG1020 Sister chromatid cohes 82.8 15 0.00032 43.5 12.2 145 176-330 815-960 (1692)
258 PF12830 Nipped-B_C: Sister ch 82.7 15 0.00033 33.6 10.6 124 302-436 9-141 (187)
259 KOG1566 Conserved protein Mo25 82.6 54 0.0012 32.6 18.5 221 213-436 73-311 (342)
260 PF13251 DUF4042: Domain of un 82.5 21 0.00046 32.7 11.2 138 193-332 2-176 (182)
261 cd03568 VHS_STAM VHS domain fa 81.6 8.4 0.00018 33.8 8.0 75 174-248 34-110 (144)
262 PF11865 DUF3385: Domain of un 81.3 14 0.0003 33.1 9.4 143 303-453 12-156 (160)
263 PF11865 DUF3385: Domain of un 80.3 14 0.00031 32.9 9.2 143 220-370 11-156 (160)
264 PF12231 Rif1_N: Rap1-interact 79.5 78 0.0017 32.4 18.4 216 232-454 59-303 (372)
265 KOG4464 Signaling protein RIC- 79.4 42 0.00091 34.6 12.8 151 303-453 47-227 (532)
266 KOG1822 Uncharacterized conser 78.9 97 0.0021 38.0 17.2 228 219-453 876-1126(2067)
267 PF06685 DUF1186: Protein of u 78.6 33 0.00071 33.1 11.6 40 382-421 110-151 (249)
268 KOG0301 Phospholipase A2-activ 76.9 51 0.0011 36.0 13.2 164 226-394 551-727 (745)
269 cd03567 VHS_GGA VHS domain fam 76.7 14 0.00031 32.2 7.8 74 174-247 35-115 (139)
270 PF10521 DUF2454: Protein of u 76.4 17 0.00037 35.6 9.3 71 219-289 119-203 (282)
271 PF04869 Uso1_p115_head: Uso1 74.5 97 0.0021 30.9 14.4 148 314-461 51-238 (312)
272 PF08506 Cse1: Cse1; InterPro 74.1 80 0.0017 32.4 13.7 129 315-449 225-370 (370)
273 KOG2005 26S proteasome regulat 74.1 1.4E+02 0.003 32.9 15.5 75 176-250 47-127 (878)
274 KOG1788 Uncharacterized conser 74.1 1.1E+02 0.0024 35.5 15.1 79 334-412 900-982 (2799)
275 KOG4231 Intracellular membrane 74.0 2.4 5.1E-05 44.3 2.5 70 385-454 330-399 (763)
276 cd03561 VHS VHS domain family; 73.2 16 0.00035 31.4 7.3 75 384-458 38-116 (133)
277 cd03568 VHS_STAM VHS domain fa 72.9 18 0.0004 31.7 7.6 74 383-456 37-112 (144)
278 cd03569 VHS_Hrs_Vps27p VHS dom 71.6 21 0.00045 31.2 7.7 73 383-455 41-115 (142)
279 COG5098 Chromosome condensatio 70.8 20 0.00042 39.3 8.4 111 173-288 295-414 (1128)
280 PF10521 DUF2454: Protein of u 70.2 35 0.00076 33.4 9.8 70 261-330 120-203 (282)
281 PF00790 VHS: VHS domain; Int 70.2 14 0.0003 32.2 6.2 72 176-247 41-117 (140)
282 PF10274 ParcG: Parkin co-regu 70.2 50 0.0011 30.2 9.9 117 342-459 38-169 (183)
283 PF03130 HEAT_PBS: PBS lyase H 69.1 3 6.5E-05 25.3 1.3 27 276-312 1-27 (27)
284 PF14225 MOR2-PAG1_C: Cell mor 68.3 1.2E+02 0.0026 29.5 14.6 178 174-370 61-253 (262)
285 PF14726 RTTN_N: Rotatin, an a 65.2 36 0.00079 27.8 7.2 68 299-366 28-95 (98)
286 PF04821 TIMELESS: Timeless pr 64.8 1.3E+02 0.0027 29.3 12.4 33 338-370 174-207 (266)
287 smart00288 VHS Domain present 64.3 37 0.00079 29.2 7.7 71 384-454 38-111 (133)
288 cd03567 VHS_GGA VHS domain fam 63.3 41 0.00089 29.3 7.8 72 383-454 38-116 (139)
289 PF08167 RIX1: rRNA processing 63.0 51 0.0011 29.5 8.6 109 343-454 26-143 (165)
290 PF11864 DUF3384: Domain of un 62.7 2.1E+02 0.0045 30.2 18.9 65 385-456 215-287 (464)
291 PF12231 Rif1_N: Rap1-interact 62.7 1.8E+02 0.0039 29.7 13.6 215 190-411 59-302 (372)
292 COG5656 SXM1 Importin, protein 62.2 60 0.0013 36.0 10.1 143 218-362 407-562 (970)
293 KOG0413 Uncharacterized conser 62.1 31 0.00067 39.2 8.1 123 233-370 945-1072(1529)
294 PF11864 DUF3384: Domain of un 61.5 2.2E+02 0.0047 30.1 19.9 265 174-452 25-328 (464)
295 PF10274 ParcG: Parkin co-regu 60.9 1.1E+02 0.0023 28.2 10.2 76 174-249 35-110 (183)
296 PF11229 DUF3028: Protein of u 59.4 2.5E+02 0.0054 30.0 14.0 145 220-373 199-355 (589)
297 PF12054 DUF3535: Domain of un 59.3 2.4E+02 0.0051 29.7 14.1 212 233-454 101-342 (441)
298 PF11791 Aconitase_B_N: Aconit 59.1 13 0.00027 32.9 3.7 26 385-410 96-121 (154)
299 PF12726 SEN1_N: SEN1 N termin 58.8 82 0.0018 35.4 11.2 142 176-331 440-586 (727)
300 KOG0413 Uncharacterized conser 58.7 43 0.00093 38.2 8.4 128 190-331 944-1074(1529)
301 PF00790 VHS: VHS domain; Int 58.2 31 0.00067 29.9 6.2 71 384-454 43-118 (140)
302 PF12726 SEN1_N: SEN1 N termin 57.2 90 0.0019 35.1 11.1 110 303-413 443-554 (727)
303 PF11791 Aconitase_B_N: Aconit 57.1 19 0.00042 31.7 4.5 82 304-394 40-137 (154)
304 PF14500 MMS19_N: Dos2-interac 56.9 1.9E+02 0.0042 28.0 15.7 207 223-454 3-237 (262)
305 PLN03076 ARF guanine nucleotid 56.0 5E+02 0.011 32.5 23.7 269 182-457 1142-1492(1780)
306 PF14666 RICTOR_M: Rapamycin-i 54.5 2E+02 0.0043 27.3 14.0 130 315-454 78-225 (226)
307 PF14666 RICTOR_M: Rapamycin-i 53.4 2E+02 0.0044 27.2 12.4 144 233-411 78-224 (226)
308 KOG2676 Uncharacterized conser 53.1 16 0.00034 36.8 3.7 64 361-424 375-441 (478)
309 PF14663 RasGEF_N_2: Rapamycin 52.4 40 0.00087 28.3 5.7 39 220-258 9-47 (115)
310 PF08216 CTNNBL: Catenin-beta- 51.7 13 0.00029 30.8 2.6 41 196-237 65-105 (108)
311 PF08389 Xpo1: Exportin 1-like 51.6 98 0.0021 26.2 8.4 126 275-407 3-148 (148)
312 smart00567 EZ_HEAT E-Z type HE 51.1 18 0.0004 22.0 2.6 28 275-312 2-29 (30)
313 PF08389 Xpo1: Exportin 1-like 51.0 66 0.0014 27.3 7.1 35 172-207 21-55 (148)
314 PF08216 CTNNBL: Catenin-beta- 49.1 19 0.00041 29.9 3.1 42 359-400 63-104 (108)
315 PF13001 Ecm29: Proteasome sta 48.8 2.9E+02 0.0063 29.5 12.9 169 228-413 246-444 (501)
316 PF04821 TIMELESS: Timeless pr 48.2 2.7E+02 0.0058 27.0 12.0 58 356-413 134-209 (266)
317 KOG1832 HIV-1 Vpr-binding prot 47.7 95 0.0021 35.3 8.8 154 238-394 328-491 (1516)
318 cd08050 TAF6 TATA Binding Prot 46.9 1.3E+02 0.0029 30.4 9.5 139 180-328 181-338 (343)
319 PF06012 DUF908: Domain of Unk 46.7 92 0.002 31.3 8.3 64 358-421 238-306 (329)
320 cd03572 ENTH_epsin_related ENT 46.5 80 0.0017 26.9 6.6 72 175-246 36-117 (122)
321 PF06012 DUF908: Domain of Unk 45.6 1.1E+02 0.0023 30.8 8.5 76 317-392 238-325 (329)
322 cd00197 VHS_ENTH_ANTH VHS, ENT 45.5 1.4E+02 0.003 24.6 8.0 73 174-246 34-113 (115)
323 PF12074 DUF3554: Domain of un 44.6 2.7E+02 0.0059 27.8 11.4 210 193-416 3-239 (339)
324 PF13001 Ecm29: Proteasome sta 43.4 1.5E+02 0.0032 31.8 9.6 171 270-454 247-443 (501)
325 KOG1822 Uncharacterized conser 43.3 2.5E+02 0.0054 34.8 11.8 229 178-412 877-1127(2067)
326 PF04064 DUF384: Domain of unk 43.3 1.3E+02 0.0028 22.0 6.5 53 407-460 2-55 (58)
327 cd08050 TAF6 TATA Binding Prot 43.0 1.2E+02 0.0027 30.6 8.6 110 261-370 211-339 (343)
328 cd00197 VHS_ENTH_ANTH VHS, ENT 42.5 1.6E+02 0.0035 24.2 8.0 70 384-453 38-114 (115)
329 PF07923 N1221: N1221-like pro 42.1 58 0.0013 32.1 5.9 55 176-230 59-127 (293)
330 PF14663 RasGEF_N_2: Rapamycin 41.9 1.4E+02 0.0031 24.9 7.5 39 302-340 9-47 (115)
331 PRK09169 hypothetical protein; 41.0 8.9E+02 0.019 31.0 18.8 46 88-133 133-181 (2316)
332 cd03565 VHS_Tom1 VHS domain fa 40.6 2.1E+02 0.0047 24.8 8.6 75 174-248 35-115 (141)
333 cd03572 ENTH_epsin_related ENT 40.4 2.3E+02 0.005 24.1 10.1 70 343-412 39-119 (122)
334 PF12463 DUF3689: Protein of u 40.2 3.9E+02 0.0084 26.6 16.4 121 253-373 2-175 (303)
335 KOG1791 Uncharacterized conser 39.7 8E+02 0.017 30.1 15.5 191 177-395 1439-1640(1758)
336 PF04499 SAPS: SIT4 phosphatas 39.0 3.1E+02 0.0067 29.2 11.1 31 340-370 60-91 (475)
337 KOG2549 Transcription initiati 38.9 3.3E+02 0.0071 29.3 10.9 141 222-371 210-370 (576)
338 PF04388 Hamartin: Hamartin pr 38.9 4.3E+02 0.0093 29.5 12.6 135 301-453 4-139 (668)
339 KOG1525 Sister chromatid cohes 38.7 1E+02 0.0022 36.7 7.9 147 259-412 258-405 (1266)
340 PF14631 FancD2: Fanconi anaem 38.5 8.3E+02 0.018 30.0 19.7 188 261-454 380-587 (1426)
341 KOG0392 SNF2 family DNA-depend 38.0 7.9E+02 0.017 29.6 16.1 117 343-459 209-330 (1549)
342 PF07923 N1221: N1221-like pro 37.8 65 0.0014 31.8 5.5 56 381-436 58-127 (293)
343 KOG1525 Sister chromatid cohes 37.5 1E+02 0.0022 36.7 7.7 72 174-248 256-329 (1266)
344 PLN03205 ATR interacting prote 37.5 4.9E+02 0.011 27.0 11.9 154 261-414 324-518 (652)
345 PF01365 RYDR_ITPR: RIH domain 37.3 1.5E+02 0.0033 27.3 7.7 100 334-436 35-153 (207)
346 PF12054 DUF3535: Domain of un 36.7 3.5E+02 0.0076 28.4 11.0 76 192-271 102-179 (441)
347 KOG2011 Sister chromatid cohes 36.1 4.2E+02 0.0092 31.0 12.0 135 187-329 297-434 (1048)
348 KOG2199 Signal transducing ada 36.0 1.4E+02 0.0029 30.7 7.3 73 383-455 45-119 (462)
349 COG5537 IRR1 Cohesin [Cell div 35.5 3.3E+02 0.0072 29.7 10.3 138 185-330 283-422 (740)
350 KOG1791 Uncharacterized conser 35.3 5E+02 0.011 31.7 12.5 200 211-437 1431-1640(1758)
351 KOG2199 Signal transducing ada 34.5 1.5E+02 0.0032 30.5 7.3 75 174-248 42-118 (462)
352 PF14225 MOR2-PAG1_C: Cell mor 33.7 4.5E+02 0.0098 25.5 18.3 174 219-411 64-253 (262)
353 PLN03076 ARF guanine nucleotid 32.8 7.8E+02 0.017 30.9 14.2 236 194-436 1109-1404(1780)
354 PF01603 B56: Protein phosphat 32.8 5.8E+02 0.013 26.4 17.6 231 176-417 132-375 (409)
355 KOG2312 Predicted transcriptio 32.4 4.5 9.8E-05 43.7 -3.8 150 283-434 16-170 (847)
356 KOG4708 Mitochondrial ribosoma 32.3 18 0.0004 31.2 0.5 32 19-51 69-100 (141)
357 KOG1992 Nuclear export recepto 32.3 8.1E+02 0.017 28.0 16.4 44 261-304 499-543 (960)
358 KOG2676 Uncharacterized conser 32.0 62 0.0013 32.8 4.1 62 320-381 375-440 (478)
359 PF12074 DUF3554: Domain of un 31.8 5.3E+02 0.011 25.7 13.7 211 236-457 4-238 (339)
360 cd03565 VHS_Tom1 VHS domain fa 31.6 3.3E+02 0.0071 23.6 8.3 72 384-455 39-116 (141)
361 KOG2073 SAP family cell cycle 31.1 8.6E+02 0.019 27.9 16.0 175 213-395 184-377 (838)
362 PF04499 SAPS: SIT4 phosphatas 31.0 2E+02 0.0043 30.6 8.1 76 213-288 56-147 (475)
363 KOG2038 CAATT-binding transcri 30.5 4.6E+02 0.01 29.5 10.6 67 382-453 303-369 (988)
364 KOG1410 Nuclear transport rece 29.9 8.3E+02 0.018 27.3 17.7 219 227-454 14-284 (1082)
365 PRK09169 hypothetical protein; 29.8 1.3E+03 0.028 29.7 20.2 75 177-254 123-200 (2316)
366 PF04388 Hamartin: Hamartin pr 28.6 3.6E+02 0.0078 30.0 9.9 57 232-288 81-139 (668)
367 PF01365 RYDR_ITPR: RIH domain 27.5 1.1E+02 0.0024 28.2 5.0 114 294-412 36-169 (207)
368 KOG2152 Sister chromatid cohes 27.4 9E+02 0.02 27.2 12.1 190 220-425 333-556 (865)
369 PF07539 DRIM: Down-regulated 25.8 2.1E+02 0.0046 24.9 6.1 80 179-270 19-98 (141)
370 KOG1087 Cytosolic sorting prot 25.8 2.3E+02 0.0049 30.1 7.3 73 173-245 34-109 (470)
371 KOG0891 DNA-dependent protein 25.0 1.2E+03 0.026 30.2 14.1 223 226-455 488-720 (2341)
372 PF14631 FancD2: Fanconi anaem 24.6 8.5E+02 0.018 29.9 12.5 127 227-358 443-570 (1426)
373 KOG4231 Intracellular membrane 24.6 48 0.001 35.1 2.0 68 345-412 331-399 (763)
374 KOG1992 Nuclear export recepto 24.5 5.8E+02 0.013 29.0 10.1 30 176-205 497-526 (960)
375 PLN03205 ATR interacting prote 23.7 2.2E+02 0.0047 29.5 6.4 151 220-371 324-516 (652)
376 KOG1848 Uncharacterized conser 23.5 4.1E+02 0.009 32.0 9.2 204 192-399 811-1032(1610)
377 KOG0891 DNA-dependent protein 22.6 9.6E+02 0.021 31.1 12.6 196 218-415 564-766 (2341)
378 KOG4524 Uncharacterized conser 22.3 2.2E+02 0.0047 32.7 6.6 91 262-353 805-900 (1014)
379 KOG2038 CAATT-binding transcri 22.3 4E+02 0.0086 30.0 8.3 76 341-421 303-379 (988)
380 KOG2005 26S proteasome regulat 21.6 1.2E+03 0.025 26.2 16.7 68 174-248 449-518 (878)
381 KOG4524 Uncharacterized conser 21.6 3.8E+02 0.0081 30.9 8.2 92 177-271 803-900 (1014)
382 PF11229 DUF3028: Protein of u 21.5 7.4E+02 0.016 26.6 9.8 226 96-332 95-355 (589)
383 PF12765 Cohesin_HEAT: HEAT re 21.0 1.3E+02 0.0029 20.2 3.1 25 177-201 18-42 (42)
384 KOG0392 SNF2 family DNA-depend 20.7 2.4E+02 0.0051 33.6 6.5 107 220-330 817-925 (1549)
385 KOG1993 Nuclear transport rece 20.1 1.3E+03 0.029 26.3 15.9 245 178-434 527-790 (978)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-30 Score=299.25 Aligned_cols=282 Identities=24% Similarity=0.303 Sum_probs=253.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH-H
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT-L 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~-~ 255 (464)
+.++.|+++|.+++..+|+.|+++|++++..+++++..+.+.|+||+|+++|+++++.+++.|+|+|+||+.++++.+ .
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 478999999999999999999999999999989999999999999999999999999999999999999999765544 4
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc--------------------------------------hhhh
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN--------------------------------------KSSI 297 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~--------------------------------------~~~i 297 (464)
+.+.|++|+|+++|++++...+..|+|+|.+|+.+.+. +...
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~ 605 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGS 605 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhh
Confidence 55789999999999999999999999999999643111 0111
Q ss_pred hccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCHh
Q 012413 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA--GIAE 374 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa--~~~~ 374 (464)
...|+++.|+++|.+++..+++.|+++|.+++.. ++.++.++..|++++|+.+|.+.+.+++.+++++|.+++ ..+.
T Consensus 606 ~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~ 685 (2102)
T PLN03200 606 AANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN 685 (2102)
T ss_pred hccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH
Confidence 2468999999999999999999999999999994 567888999999999999999999999999999999999 3455
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
++..+++.|+|++|+++|++.+.+++..|+.+|.+|+.+.+ .+..+.++|++++|+++|++++++.|+.|+|+|..|+.
T Consensus 686 q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 686 RKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 67788999999999999999999999999999999998764 56777789999999999999999999999999999998
Q ss_pred CCCCC
Q 012413 455 PRQEG 459 (464)
Q Consensus 455 ~~~~~ 459 (464)
+++.+
T Consensus 765 ~~~~~ 769 (2102)
T PLN03200 765 HFPVD 769 (2102)
T ss_pred CCChh
Confidence 88754
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.98 E-value=3e-30 Score=296.43 Aligned_cols=352 Identities=21% Similarity=0.228 Sum_probs=286.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCC--Cchh-h-hhcCcccCcccccCCCchhhhhhhcccCchhh-----
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLP--SPEN-I-LRQPNENNCQAELEPEPEPCLGFLQRENFSTE----- 165 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~--~~~~-~-~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~----- 165 (464)
.+..++||..+|++ .+.+|.+++.+|..++..+ +... . ....| .+|.+ +..++..+..+.
T Consensus 97 ~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~G-------aVp~L---v~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 97 LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEG-------VVPSL---WDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcC-------ChHHH---HHHHhCCchhhHHHHHH
Confidence 47899999999998 8889999999999999876 2221 1 22233 45555 555554322111
Q ss_pred ---HhhhcC---CCCc-----hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCH
Q 012413 166 ---IIESIS---PEDL-----QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDP 233 (464)
Q Consensus 166 ---i~~~~~---~~~~-----~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~ 233 (464)
++..+. ++.+ .+.|+.++..|+++++.++..|+++|.+++.+.++.+..+++.|+||.|+++|++ +++
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~ 246 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV 246 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh
Confidence 111110 0100 3588899999999999999999999999998888899999999999999999986 567
Q ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccCC---------HHHHHHHHHHHHHhcccc-c----------
Q 012413 234 WTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGT---------ETSKQNAACALMSLALIE-E---------- 292 (464)
Q Consensus 234 ~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~~---------~~v~~~a~~aL~~Ls~~~-~---------- 292 (464)
.+|+.|+|+|.+|+.+ ++.++.+++.|+||.|++++..++ ..++++|.|+|.||+.+. .
T Consensus 247 ~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~ 326 (2102)
T PLN03200 247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSE 326 (2102)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhc
Confidence 9999999999999996 689999999999999999998654 346999999999988730 0
Q ss_pred -ch--------------------------------------------------------------------hhhhccCCh
Q 012413 293 -NK--------------------------------------------------------------------SSIGACGAI 303 (464)
Q Consensus 293 -~~--------------------------------------------------------------------~~i~~~g~i 303 (464)
.+ ..+.+.+++
T Consensus 327 s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~dai 406 (2102)
T PLN03200 327 SPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAK 406 (2102)
T ss_pred ccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccch
Confidence 00 001122445
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHh
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVE 381 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~ 381 (464)
+.|+.||...+.+++..++++|++|+.+ .+.++.+++.|++|.|+.+|.+++..+++.|+++|++|+ ++++++..+++
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5556666666678899999999999985 578889999999999999999999999999999999999 56788999999
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
.|+++.|+++|.+++..+++.|+|+|+||+.+++..+..+.++|++++|+++|+++++++++.|+|+|.+|...+.
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999877777778889999999999999999999999999999976543
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.8e-30 Score=263.19 Aligned_cols=342 Identities=22% Similarity=0.246 Sum_probs=287.9
Q ss_pred HHHhhhhhcccchhhhHHHHHHhhcCCC--chhhhhcCcccCcccccCCCchhhhhhhcccCc-----------------
Q 012413 102 NVSQAFSDFSVCSSDISGELQRLASLPS--PENILRQPNENNCQAELEPEPEPCLGFLQRENF----------------- 162 (464)
Q Consensus 102 ~L~~ll~~~~~~r~~a~~~l~~la~~~~--~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~----------------- 162 (464)
-+..++++.+.-+..+..++.++.+... +++.+...| .+|.+ |.+|...++
T Consensus 71 ~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G-------~v~~l---V~~l~~~~~~~lq~eAAWaLTnIAsg 140 (514)
T KOG0166|consen 71 MLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSG-------VVPRL---VEFLSRDDNPTLQFEAAWALTNIASG 140 (514)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcC-------cHHHH---HHHHccCCChhHHHHHHHHHHHHhcC
Confidence 3444566655557788899999887654 445555555 67766 888865442
Q ss_pred hhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCH-HHHHHHHH
Q 012413 163 STEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDP-WTQEHSVT 241 (464)
Q Consensus 163 s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~-~v~~~A~~ 241 (464)
..+-...+++ .++|+.++.+|.+++.+|++.|+|+|++++.+++.+|..+.+.|++++|+.++..+++ .+.+.+.|
T Consensus 141 tse~T~~vv~---agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW 217 (514)
T KOG0166|consen 141 TSEQTKVVVD---AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATW 217 (514)
T ss_pred chhhcccccc---CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHH
Confidence 1111111111 3688889999999999999999999999999999999999999999999999998776 78999999
Q ss_pred HHHHhcCCCchHHHH-HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHH
Q 012413 242 ALLNLSLHENNKTLI-TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKK 319 (464)
Q Consensus 242 aL~~La~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~ 319 (464)
+|.||+.+.+....+ .-..++|.|..++.+.|+++...|||+|.+|+.++ +.-+.+++.|++|.|+++|.+.+..++.
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~ 297 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVT 297 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccccc
Confidence 999999976433332 33679999999999999999999999999999874 6778888999999999999999999999
Q ss_pred HHHHHHHHHhcCcchH-HHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCC
Q 012413 320 DALTTLYKLCSLKQNK-ERAVSAGAVRPLVGMLA-GQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGS 396 (464)
Q Consensus 320 ~A~~aL~nL~~~~~~~-~~iv~~g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~ 396 (464)
.|+++++|++...+.+ +.+++.|++|.|..++. ++...++.+|+|+|.|++ ++.+..++++++|.+|.|+.+|+..+
T Consensus 298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e 377 (514)
T KOG0166|consen 298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE 377 (514)
T ss_pred HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc
Confidence 9999999999966554 56678999999999998 555668999999999999 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 397 VKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 397 ~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
.++|..|+|+++|++... +++-..+++.|+|++|.++|.-.+.++...+..+|.+|-+.+
T Consensus 378 f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 378 FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 555667999999999999998889999999999999887644
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-30 Score=265.45 Aligned_cols=281 Identities=20% Similarity=0.246 Sum_probs=256.4
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+.|+.+|++|. ..++.++..|+|+|.+++.++.+.-+.+++.|++|.++.+|.+++.++++.|+|+|+|++.+ +..|.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 58888999997 56699999999999999999999999999999999999999999999999999999999996 68899
Q ss_pred HHHhcCcHHHHHHHHccCCH-HHHHHHHHHHHHhcccccchhhh-hccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 255 LITNAGAIKSLVYVLKTGTE-TSKQNAACALMSLALIEENKSSI-GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~Ls~~~~~~~~i-~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.+.+.|++++|+.++...+. ....++.|+|.|||.+..-...+ .-..++|.|..++.+.|+++...|+|+|..|+.++
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998876 78899999999999885322222 22567999999999999999999999999999854
Q ss_pred -chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 012413 333 -QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 333 -~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~ 409 (464)
+.-+.+++.|++|.|+.+|......++..|+.+++|++ +++...+.++..|+++.|..++. +....++..|+|+|.|
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 66677789999999999999999999999999999999 67778888999999999999999 6677799999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
++.++.++.+++.++|.+|.|+.+|++++-++|+.|+||+.+++..+.
T Consensus 349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999999986554
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.3e-29 Score=239.07 Aligned_cols=276 Identities=24% Similarity=0.302 Sum_probs=257.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
.+..|+..+..+..++|..++.++.+++.- +.++..+...|++.+|..+-++.+..+|.++..+|.|+....++|+.++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 455566677788889999999999999988 8888999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccC--ChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACG--AIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g--~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.+|++|.|+.++++++.++|++++.++.+++.+..+|..+.+.+ .+|.|++++.++++.++-.|..+|+||+...+.+
T Consensus 206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 99999999999999999999999999999999999999999877 9999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcC
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~ 414 (464)
..++++|++|.++++|+++..........|+.|++-++-+..-|+++|.+.+|+.+|.-+ ++++|-.|..+|++|+...
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 999999999999999999988888889999999999999999999999999999999965 5669999999999999989
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
+.++..+.+.|+|+.|++++.++...+|..-..++..|+=
T Consensus 366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 9999999999999999999999988888877766666653
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-28 Score=234.58 Aligned_cols=311 Identities=24% Similarity=0.288 Sum_probs=276.8
Q ss_pred HhhhhhcccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHH
Q 012413 104 SQAFSDFSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICI 183 (464)
Q Consensus 104 ~~ll~~~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv 183 (464)
.|...|...+|.++++.+-.+++..+....+.. .+.+..+.
T Consensus 133 ~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~---------------------------------------sGaL~plt 173 (550)
T KOG4224|consen 133 LQMMTDGVEVQCNAVGCITNLATFDSNKVKIAR---------------------------------------SGALEPLT 173 (550)
T ss_pred HHhcCCCcEEEeeehhhhhhhhccccchhhhhh---------------------------------------ccchhhhH
Confidence 445556666777888888777666444333321 23444556
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcC--c
Q 012413 184 DGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAG--A 261 (464)
Q Consensus 184 ~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g--~ 261 (464)
++-++.+..+|+.+..+|.+++.. .++|+.++..|++|.|+.++++.++++|..++.++++++-+...|+.+++.| .
T Consensus 174 rLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~l 252 (550)
T KOG4224|consen 174 RLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKL 252 (550)
T ss_pred hhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence 666788899999999999999876 8889999999999999999999999999999999999999999999999888 9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHc
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSA 341 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~ 341 (464)
||.|+.++.++++.++.+|..+|.+|+.+.+.+..|+++|++|.++++|+++..........++.|++.++-|-..++++
T Consensus 253 v~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~da 332 (550)
T KOG4224|consen 253 VPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADA 332 (550)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecc
Confidence 99999999999999999999999999999999999999999999999999998888888899999999999999999999
Q ss_pred CCHHHHHHhhcCCC-HHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHH
Q 012413 342 GAVRPLVGMLAGQG-EGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRG 419 (464)
Q Consensus 342 g~v~~Lv~lL~~~~-~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~ 419 (464)
|.+.+||.+|+..+ ++++-+|...|+||+. ...++..|.+.|+|+.|.+++.+....+|...-.|+..|+-. +..+.
T Consensus 333 gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~ 411 (550)
T KOG4224|consen 333 GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKE 411 (550)
T ss_pred cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHH
Confidence 99999999998665 5589999999999996 677899999999999999999999999999999999999854 56788
Q ss_pred HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 420 LLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 420 ~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.+.+.|.++.|+.+..+.+.+++.+|+.||.+++..
T Consensus 412 ~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 412 ALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 899999999999999999999999999999999864
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=3.9e-28 Score=231.40 Aligned_cols=356 Identities=19% Similarity=0.180 Sum_probs=285.5
Q ss_pred cccCCcchhHHH---HHHh-hhhhcccchhhhHHHHHHhhcC--CCchhhhhcCcccCcccccCCCchhhhhhhcccC-c
Q 012413 90 SVKSTISEDDYL---NVSQ-AFSDFSVCSSDISGELQRLASL--PSPENILRQPNENNCQAELEPEPEPCLGFLQREN-F 162 (464)
Q Consensus 90 ~~~~~~~e~~~~---~L~~-ll~~~~~~r~~a~~~l~~la~~--~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~-~ 162 (464)
|.+-||.+.... .|.+ +|+|+-.-+-.++-.++++.+. ..++..++.+| .+|-+ |+|+.... +
T Consensus 60 ss~i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaG-------vVpRf---vefm~~~q~~ 129 (526)
T COG5064 60 SSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAG-------VVPRF---VEFMDEIQRD 129 (526)
T ss_pred hccCchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhcc-------ccHHH---HHHHHhcchh
Confidence 344456555433 3433 4444322233455556665554 34666777666 77777 77774322 1
Q ss_pred hhh-----HhhhcCCCCc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc
Q 012413 163 STE-----IIESISPEDL--------QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK 229 (464)
Q Consensus 163 s~~-----i~~~~~~~~~--------~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~ 229 (464)
-.+ .+-.+..+.. .++|+.++++|.+++.+|++.++|+|++++.+++.+|..+.++|++++|+.+|.
T Consensus 130 mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ 209 (526)
T COG5064 130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL 209 (526)
T ss_pred HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH
Confidence 111 1111111110 368999999999999999999999999999999999999999999999999998
Q ss_pred CCCH--HHHHHHHHHHHHhcCC--C-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCCh
Q 012413 230 CSDP--WTQEHSVTALLNLSLH--E-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAI 303 (464)
Q Consensus 230 ~~~~--~v~~~A~~aL~~La~~--~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i 303 (464)
+..+ .+.+++.|.|.||+.. | ..-..+ ..++|.|.+++.+.|+++..-|||++.+|+..+ +.-+.+.+.|..
T Consensus 210 ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~ 287 (526)
T COG5064 210 SSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIP 287 (526)
T ss_pred hccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCc
Confidence 8554 7899999999999984 3 222333 237999999999999999999999999999886 566788899999
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcCcchH-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHh
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVE 381 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~ 381 (464)
+.|+++|.+++..++.-|++.++|+....+.+ +.++..|+++.+..+|.++...++.+|||.+.|++ ++.+..+++++
T Consensus 288 ~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid 367 (526)
T COG5064 288 GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID 367 (526)
T ss_pred HHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh
Confidence 99999999999999999999999999966544 55678999999999999999999999999999998 78899999999
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE---SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
.+.+|+|+++|...+-.++..|+|++.|...+ .|+.-..+++.|.|.+|.++|.-.+..+-+.+..++.++-+-+.
T Consensus 368 ~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 368 ANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 99999999999999999999999999999876 46667788999999999999998888888888888888876543
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=1.8e-27 Score=226.80 Aligned_cols=279 Identities=19% Similarity=0.221 Sum_probs=249.2
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+.|+.+++.+. ....-.+..|+|+|.+++.+.......++++|+||.++++|.+.+.++++.+.|+|+|++.+ +..|.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 57888899994 45566788999999999999777777888999999999999999999999999999999996 58889
Q ss_pred HHHhcCcHHHHHHHHccCC--HHHHHHHHHHHHHhccccc---chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 255 LITNAGAIKSLVYVLKTGT--ETSKQNAACALMSLALIEE---NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~~Ls~~~~---~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
.+...|++.+|+.+|.+.- ..+..++.|+|.||+.... .-..+ ..++|.|.+|+.+.++++.-.|+|++..|+
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 9999999999999998764 4788999999999997621 11111 236899999999999999999999999999
Q ss_pred cCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 012413 330 SLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTL 407 (464)
Q Consensus 330 ~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 407 (464)
..+ +..+.+++.|..+.|+++|.+++..++..|+..++|+. +++...+.+++.|+++.+..+|.++...+|..|+|++
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 965 66777889999999999999999999999999999999 6666777889999999999999999999999999999
Q ss_pred HHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 408 LQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 408 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
.|++..+.++.+.+.+++.+|+|+.+|.+-+-.+++.|+||+.+....+-
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999876543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.86 E-value=3.6e-19 Score=191.06 Aligned_cols=282 Identities=19% Similarity=0.204 Sum_probs=239.5
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.+.|+.|+++|++.+.++...++..|..|+.. .+++..+.+.|+|++|+.++.+++.+++..++.+|.||+.+++.|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 46788889999999999999999999999998 67899999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
+++.|.+|.|+.+|.+++ .+..++.+|.+||.++++|..+...+++|.+++++.. ++..+...++.++.||+.++.+
T Consensus 368 mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 999999999999998654 5567999999999999999999999999999998766 4667777888888888888888
Q ss_pred HHHHHHcCCHHHHHHhhc-------------------------------------C-CCHHHHHHHHHHHHHHh------
Q 012413 335 KERAVSAGAVRPLVGMLA-------------------------------------G-QGEGMAEKAMVVLSLLA------ 370 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~-------------------------------------~-~~~~v~~~A~~aL~nLa------ 370 (464)
.+.+.+.|+++.|+.... . ++.+...+++++|+||.
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence 888777777776655321 1 12334555666677664
Q ss_pred --------------------------------------CCHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHH
Q 012413 371 --------------------------------------GIAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQL 410 (464)
Q Consensus 371 --------------------------------------~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L 410 (464)
..+..+..+.+.|.++.|+++++. +++++....+++++++
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 233567777789999999999985 5789999999999999
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGP 460 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~ 460 (464)
..+.+.....+.+.+++..|++++++.++.+|+.|-.+|--++++..+|.
T Consensus 606 l~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 606 LFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 99866555555668999999999999999999999999999999877653
No 10
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.3e-18 Score=166.48 Aligned_cols=273 Identities=18% Similarity=0.212 Sum_probs=239.8
Q ss_pred HHHHhc--CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchH----
Q 012413 181 ICIDGL--QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNK---- 253 (464)
Q Consensus 181 ~Lv~~L--~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~---- 253 (464)
.+++.| +.++.++-...++++..-+..++.+|+.+++.++.+.+.+.|.+ ...++.+.+++++..|..+++.|
T Consensus 149 vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg 228 (461)
T KOG4199|consen 149 VVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFG 228 (461)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecc
Confidence 334554 45778899999999988888889999999999999999977665 45579999999999998877654
Q ss_pred ------HHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC-Chh---hHHHHH
Q 012413 254 ------TLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-SSR---GKKDAL 322 (464)
Q Consensus 254 ------~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-~~~---v~~~A~ 322 (464)
..|+..|++..|++.|+.. ++.+....+.+|..|+...+.+..|.+.|++..|+.++.+. ... ..+.++
T Consensus 229 ~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~l 308 (461)
T KOG4199|consen 229 QAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCL 308 (461)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHH
Confidence 4566788899999999875 78999999999999999999999999999999999999984 333 457889
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcC--CH
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLA--GQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDG--SV 397 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~--~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~--~~ 397 (464)
..|..|+.++.++..+++.|+.+.++.++. ..++.+.+.++.++.-|+ ..+++...+++.|+-...++.|+.. ..
T Consensus 309 slLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a 388 (461)
T KOG4199|consen 309 SLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAA 388 (461)
T ss_pred HHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHH
Confidence 999999999999999999999999999984 557889999999999999 7899999999999999999999954 57
Q ss_pred HHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 398 KGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 398 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+|.+|++.+.||..++..++..+...| ++.|+...+..++.++..|+.||+.|.=
T Consensus 389 ~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 389 QVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 8999999999999999988888877766 9999999999999999999999998863
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.82 E-value=3.9e-18 Score=183.17 Aligned_cols=257 Identities=23% Similarity=0.222 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT 271 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 271 (464)
.+...|+..|.|++.+ +.....+.+.|+|+.|+++|++++.++...++.+|.+|+...+++..+.+.|+|+.|++++.+
T Consensus 264 qLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 3444778889999998 677788889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh
Q 012413 272 GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML 351 (464)
Q Consensus 272 ~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL 351 (464)
++.+++..++++|.|||.+++.|..++..|.+|.|+.+|.++ ..+..++.+|++|+..++++..+...+++|.++.++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999864 456679999999999999999999999999999986
Q ss_pred cC-CCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHH
Q 012413 352 AG-QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPL 430 (464)
Q Consensus 352 ~~-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 430 (464)
-. +++.+...++..+.||+.++.+.+.+.+.|+++.|++......+. .....+.|++.+++..+..+. +.+..|
T Consensus 421 l~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L 495 (708)
T PF05804_consen 421 LENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDL 495 (708)
T ss_pred HhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHH
Confidence 54 556677788999999999999999999989999999988764432 344699999998866666665 478899
Q ss_pred HHhhhcC-CHHHHHHHHHHHHHhhcCC
Q 012413 431 VALSQTG-SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 431 v~lL~s~-~~~v~~~A~~aL~~L~~~~ 456 (464)
++++..+ +++..-.+.++|.+|.-.+
T Consensus 496 ~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 496 AKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 9998775 5688889999999987543
No 12
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.80 E-value=1e-18 Score=190.22 Aligned_cols=266 Identities=23% Similarity=0.246 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC------------CHHHHHHHHHHHHHhcCC-CchHHHHHh-c
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS------------DPWTQEHSVTALLNLSLH-ENNKTLITN-A 259 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~------------~~~v~~~A~~aL~~La~~-~~~~~~i~~-~ 259 (464)
...|+.+|-.++.+ ++.|..+-+.|++..+-.||.-+ .-.+|+.|..+|.||... ..+|..++. .
T Consensus 315 lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 34677777888887 89999999999999999887532 246899999999999996 578888775 8
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhcccc--cchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhc-CcchH
Q 012413 260 GAIKSLVYVLKTGTETSKQNAACALMSLALIE--ENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCS-LKQNK 335 (464)
Q Consensus 260 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~-~~~~~ 335 (464)
|.+..+|.-|.+..+++....+.+|.||++.. ..+..+.+.|-+..|+.+- ........+..+.+||||+. ..+|+
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 99999999999999999999999999999983 3467777899999998875 44567889999999999999 56899
Q ss_pred HHHHH-cCCHHHHHHhhcCCC----HHHHHHHHHHHHHHhC----CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHH
Q 012413 336 ERAVS-AGAVRPLVGMLAGQG----EGMAEKAMVVLSLLAG----IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLT 406 (464)
Q Consensus 336 ~~iv~-~g~v~~Lv~lL~~~~----~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 406 (464)
..|-+ .|++..||.+|..+. ..+.+.|.++|.|+.. .+.+|+.+.+..++..|+++|++.+-.+..+++++
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence 99976 889999999997653 4678899999999864 57889999999999999999999999999999999
Q ss_pred HHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCC
Q 012413 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGP 460 (464)
Q Consensus 407 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~ 460 (464)
||||...+++.++.+|+.|+++.|.+++++.+..+-+.++.+|+||..+|+-..
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAkq 607 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAKQ 607 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchhh
Confidence 999999999999999999999999999999999999999999999999985433
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1e-15 Score=146.76 Aligned_cols=270 Identities=16% Similarity=0.198 Sum_probs=231.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcC-CCchHHHHHhcCc
Q 012413 185 GLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSL-HENNKTLITNAGA 261 (464)
Q Consensus 185 ~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~ 261 (464)
+-.+++..+...++.+|..+....|.. .+..+...++.+|.. ++.++.......+..-+. |+.+|+.+++.++
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 345678888899999999998886654 467888999998865 677787777777777665 7899999999999
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHhcccccc----------hhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHh
Q 012413 262 IKSLVYVLKT-GTETSKQNAACALMSLALIEEN----------KSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLC 329 (464)
Q Consensus 262 i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~----------~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~ 329 (464)
.+.+...|.. +...+....+|+++.|..+++. ...|...|+...|++.+.-. ++.+...++.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9999976655 4456889999999999876554 45667778899999999886 8999999999999999
Q ss_pred cCcchHHHHHHcCCHHHHHHhhcCCC-H---HHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh--cCCHHHHHHH
Q 012413 330 SLKQNKERAVSAGAVRPLVGMLAGQG-E---GMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE--DGSVKGKEFA 403 (464)
Q Consensus 330 ~~~~~~~~iv~~g~v~~Lv~lL~~~~-~---~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A 403 (464)
..++.+..+.+.||+..|+.++.+.+ . .....++..|..|++++..+..|++.||.+.++.++. ..++.+.+.+
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999998754 2 3457788999999999999999999999999999987 4689999999
Q ss_pred HHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCCC
Q 012413 404 VLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~~L~~~~~~ 458 (464)
+.++.-||-..|++...+++.|+-...+..++.. ...++++|+|+++++.-..++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999875 359999999999999876554
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.75 E-value=5.6e-17 Score=170.85 Aligned_cols=280 Identities=21% Similarity=0.238 Sum_probs=229.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC---Cch
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH---ENN 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~---~~~ 252 (464)
.+.++.-+.+|.+.++.++..|+..|..++..+.+.+..+.+.|+|+.|+.+|++...+++..||++|-||... .++
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 46777778999999999999999999999999999999999999999999999999999999999999999884 258
Q ss_pred HHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--------------Chhh
Q 012413 253 KTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--------------SSRG 317 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--------------~~~v 317 (464)
+-.|.+.++|+.++.+|+. .|.++++.+..+|+||+.++..|..++... +..|...+-.+ +..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCccccccccee
Confidence 8899999999999999987 799999999999999999977777665543 55555544321 2567
Q ss_pred HHHHHHHHHHHhc-CcchHHHHHH-cCCHHHHHHhhc------CCCHHHHHHHHHHHHHHhCCHh---------------
Q 012413 318 KKDALTTLYKLCS-LKQNKERAVS-AGAVRPLVGMLA------GQGEGMAEKAMVVLSLLAGIAE--------------- 374 (464)
Q Consensus 318 ~~~A~~aL~nL~~-~~~~~~~iv~-~g~v~~Lv~lL~------~~~~~v~~~A~~aL~nLa~~~~--------------- 374 (464)
..+++++|.|++. ..+.+++|.+ .|.|..|+..++ ..+....++++.+|.||...-+
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 8899999999999 7789999987 889999999886 3456679999999999973110
Q ss_pred -----------------hHHH----------------------HHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcC
Q 012413 375 -----------------GREA----------------------IVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 375 -----------------~~~~----------------------i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~ 414 (464)
-... +....+|..-+.+|. +.++.+.+.++.+|-||+...
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 0001 111224555455565 467889999999999999864
Q ss_pred H----HhHH-HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 415 V----KNRG-LLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 415 ~----~~~~-~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
. ..+. .+..+.++++|+++|+.++++|...++.+|++++.+.
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 2 2333 3478899999999999999999999999999998754
No 15
>PRK09687 putative lyase; Provisional
Probab=99.74 E-value=2.9e-16 Score=153.66 Aligned_cols=256 Identities=16% Similarity=0.086 Sum_probs=203.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
..-.+++|..+|.| +..+|..++.+|+.+ +
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~-------------~------------------------------------ 51 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLR-------------G------------------------------------ 51 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhc-------------C------------------------------------
Confidence 34456778888887 788888888888765 1
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL-LKCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l-L~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
-..+++.+..+++++++.+|..|+++|+.+...... ...+++.|..+ ++++++.|+..|+.+|+++.......
T Consensus 52 ~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~ 125 (280)
T PRK09687 52 GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY 125 (280)
T ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc
Confidence 023455556778899999999999999988653211 12467888877 67799999999999999996532211
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
...+++.+...+.+++..+|..++++|..+ .+..+++.|+.+|.++++.+|..|+.+|+.+....+
T Consensus 126 ----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 126 ----SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred ----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 122566788888999999999999999875 345579999999999999999999999999833222
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
.+++.|+.+|.+.+..|+..|+++|+.+.. ..+++.|++.+.+++ ++..|+.+|++++..
T Consensus 192 --------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 192 --------DIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK 251 (280)
T ss_pred --------HHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence 377889999999999999999999997654 468999999999866 677899999999852
Q ss_pred CHHhHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHH
Q 012413 414 SVKNRGLLVREGGIPPLVALSQ-TGSVRAKHKAETLLGY 451 (464)
Q Consensus 414 ~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~~ 451 (464)
.+++.|..++. .++++++.+|.++|..
T Consensus 252 -----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 37899999997 7799999999999875
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.68 E-value=4e-15 Score=142.86 Aligned_cols=227 Identities=19% Similarity=0.205 Sum_probs=192.3
Q ss_pred HHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc
Q 012413 215 IGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN 293 (464)
Q Consensus 215 i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~ 293 (464)
+.+.+-++.|+.+|+. .+|.+++.|..++++.+..+.++..+.+.|+++.+..+|.++++.++..|+++|.|++...++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 3567888999999996 799999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 294 KSSIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
+..+.. .++.+.+...+. +..++..++++|.||+..++.+..+.. .++.++.+|..++..++.+++.+|.||+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 887743 578877766554 789999999999999988877777654 79999999999999999999999999999
Q ss_pred CHhhHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCH-H-------------hHHHHHHcC-ChHHHHHhhh
Q 012413 372 IAEGREAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAESV-K-------------NRGLLVREG-GIPPLVALSQ 435 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~-~-------------~~~~i~~~g-~i~~Lv~lL~ 435 (464)
++.....++.+.+...++.++... +.++...++..+.||..+-. + .-..+.+.+ ..+.|..+..
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~ 243 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALAN 243 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHc
Confidence 999999999999999999999864 78889999999999965311 1 012233333 5566777777
Q ss_pred cCCHHHHHHH
Q 012413 436 TGSVRAKHKA 445 (464)
Q Consensus 436 s~~~~v~~~A 445 (464)
+++++||.+.
T Consensus 244 h~d~ev~~~v 253 (254)
T PF04826_consen 244 HPDPEVKEQV 253 (254)
T ss_pred CCCHHHhhhc
Confidence 7777887753
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.67 E-value=2.6e-14 Score=151.24 Aligned_cols=282 Identities=17% Similarity=0.175 Sum_probs=228.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
....+.+..+|.++++.||..+++.|+++..++....+.+.+.+.++.++.+|.+++..+...|+.+|.+++.++...+.
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 45677788999999999999999999999999888788888999999999999999999999999999999999888888
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
+.+.+.++.|..++...+..+|..+..++.+++.. ++....+.+.|.++.+++.|.++|.-++.+++.+|..|+..+.+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 88989999999999998999999999999999987 56777888899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHH------HHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGM------AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v------~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
.+.+.+.|+++.|+.++.+...+. .-..+...++++...+..-.-.-...+..|.+++.+.+...+..|..+++
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 999999999999999996543222 22334566667753111111111335556667777889999999999999
Q ss_pred HHhhcCHHhHHHH-HHc-CC----hHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCC
Q 012413 409 QLCAESVKNRGLL-VRE-GG----IPPLVALSQTGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 409 ~L~~~~~~~~~~i-~~~-g~----i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
.|+.. .+.+..+ ... +. +...-....++..++|.++..+|..+-..+..
T Consensus 316 ~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 316 QIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 99954 4555555 332 33 44444444556779999999999999654443
No 18
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=6.7e-15 Score=144.03 Aligned_cols=229 Identities=12% Similarity=0.038 Sum_probs=186.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...++.|+..|.+.+..+|..|+++|..+. +..+++.+..+++++++.+|..|+++|+.|......
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 346777889999999999999999996554 346788899999999999999999999998753322
Q ss_pred HHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITNAGAIKSLVYV-LKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
...+++.|..+ ++++++.||..|+.+|+++...... ....+++.+..++.+++..||..++.+|+.+.
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence 22467888877 6788999999999999998543211 12234667778888999999999999998753
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
...+++.|+.+|.+++..++..|+.+|+.+.... ..+++.|+..+.+.+..+|..|+++|+.+..
T Consensus 157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence 2338899999999999999999999999984211 2578889999999999999999999999764
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
..+++.|++.+++++ ++..|+.+|+.+...
T Consensus 222 ---------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 222 ---------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK 251 (280)
T ss_pred ---------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence 247999999999876 678899999998763
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.64 E-value=4.5e-13 Score=141.84 Aligned_cols=322 Identities=17% Similarity=0.154 Sum_probs=246.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
..+..+.|...|.+ ++.||..+..++++++..++...... ..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~-----------------------------------~~-- 117 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL-----------------------------------VD-- 117 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh-----------------------------------cC--
Confidence 56777788888888 88888888888888765543321111 11
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
...++.++.+|.+++..|...|+.+|..++.+.+.. +.+.+.+.+..|..++...+..+|..+..++.+++.. ++..
T Consensus 118 -~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 -NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred -ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 246667789999999999999999999999985544 5577888899999999988889999999999999875 6788
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--Ch---h-hHHHHHHHHHH
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--SS---R-GKKDALTTLYK 327 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--~~---~-v~~~A~~aL~n 327 (464)
..+.+.|.++.++..|+++|.-++.+++..|..|+..+.+...+.+.|+++.|.+++.+. ++ . ..-......++
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 888889999999999999999999999999999999989999999999999999999864 33 1 11233466777
Q ss_pred HhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHH-HhcC-----cHHHHHHHHhcCCHHHHH
Q 012413 328 LCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAI-VEEN-----GIAALVEAIEDGSVKGKE 401 (464)
Q Consensus 328 L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i-~~~g-----~i~~Lv~lL~~~~~~v~~ 401 (464)
++...+..-.-.-...+..|..++.+.+...+.-|+.+++.|+...+++..+ ...| ++..+-....+...++|.
T Consensus 276 la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~ 355 (503)
T PF10508_consen 276 LARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKL 355 (503)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHH
Confidence 7774221111111224456677778888999999999999999999999999 5443 355555555567889999
Q ss_pred HHHHHHHHHhhcCHH---h------HHHHH--HcCChH-HHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 402 FAVLTLLQLCAESVK---N------RGLLV--REGGIP-PLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 402 ~A~~aL~~L~~~~~~---~------~~~i~--~~g~i~-~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
.++.+|.++....+. . +..+. ..+-.. .++.+++.+=+++|..+-..|..++.++
T Consensus 356 r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 356 RALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 999999999433221 1 11111 234444 7788888888999999999999998875
No 20
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=5.6e-14 Score=134.96 Aligned_cols=222 Identities=19% Similarity=0.179 Sum_probs=184.7
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
...++.|+..|+. .+|.+++.++.++.+.+.. +.++..+.+.|+++.+..+|.++++.++..|+++|.|++.+.+++.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 4577888999984 6899999999999998877 7899999999999999999999999999999999999999998888
Q ss_pred HHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 255 LITNAGAIKSLVYVLKTG--TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.+-. .++.+++.+.+. +..++..++.+|.+|+...+.+..+. +.++.++.+|..++..++..++++|.||+.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 7754 688888766554 78999999999999998877776664 47999999999999999999999999999999
Q ss_pred chHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCH--h-------------hHHHHHhcC-cHHHHHHHHhcC
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIA--E-------------GREAIVEEN-GIAALVEAIEDG 395 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~--~-------------~~~~i~~~g-~i~~Lv~lL~~~ 395 (464)
.....++.++++..++.++... ..++...++....||..+- + ....+.+.+ ..+.|..+..++
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~ 245 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHP 245 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCC
Confidence 9999999999999999999876 5778999999999996321 1 111222222 455666666667
Q ss_pred CHHHHHH
Q 012413 396 SVKGKEF 402 (464)
Q Consensus 396 ~~~v~~~ 402 (464)
+++||..
T Consensus 246 d~ev~~~ 252 (254)
T PF04826_consen 246 DPEVKEQ 252 (254)
T ss_pred CHHHhhh
Confidence 7777654
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.61 E-value=1.6e-13 Score=145.04 Aligned_cols=278 Identities=24% Similarity=0.255 Sum_probs=218.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch--hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCch
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD--NRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENN 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~--~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~ 252 (464)
.+.|+.||.+|.+.+.+|+..|+.+|+||...+.. ++-.+.+.++|+.++.+|+. .|.++++....+|.||+.++..
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 46788889999999999999999999999988776 88899999999999999997 7778888777777777655333
Q ss_pred H-------------------------------------------------------HHHHh-cCcHHHHHHHHcc-----
Q 012413 253 K-------------------------------------------------------TLITN-AGAIKSLVYVLKT----- 271 (464)
Q Consensus 253 ~-------------------------------------------------------~~i~~-~g~i~~Lv~lL~~----- 271 (464)
+ +.+.+ .|.|..|+..++.
T Consensus 354 K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 354 KMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 3 23333 5667888777763
Q ss_pred -CCHHHHHHHHHHHHHhccccc------c--------------------------hhh-h--------------------
Q 012413 272 -GTETSKQNAACALMSLALIEE------N--------------------------KSS-I-------------------- 297 (464)
Q Consensus 272 -~~~~v~~~a~~aL~~Ls~~~~------~--------------------------~~~-i-------------------- 297 (464)
.+....+++...|.||+..-+ . +.. .
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 366778899999999985311 0 000 0
Q ss_pred -hccCChHHHHHHhh-cCChhhHHHHHHHHHHHhcCc-----chHHHH-HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 012413 298 -GACGAIPPLVSLLI-YGSSRGKKDALTTLYKLCSLK-----QNKERA-VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLL 369 (464)
Q Consensus 298 -~~~g~i~~Li~lL~-~~~~~v~~~A~~aL~nL~~~~-----~~~~~i-v~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nL 369 (464)
...-+|..-+.+|. +.+..+.++++++|-||+... ..+..+ ..+.+.+.|+++|..++..+...++.+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 00012222233343 347789999999999998843 234444 6788999999999999999999999999999
Q ss_pred hCCHhhHHHHHhcCcHHHHHHHHhcC------CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHH
Q 012413 370 AGIAEGREAIVEENGIAALVEAIEDG------SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAK 442 (464)
Q Consensus 370 a~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~ 442 (464)
+.+..++..|. .++++.|++.|... +++....++.+|+++...+..+...+.+.++++.|+.+.++. ++.+-
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF 672 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence 99999998888 78999999999853 478889999999999999999999999999999999999986 45788
Q ss_pred HHHHHHHHHhhc
Q 012413 443 HKAETLLGYLRE 454 (464)
Q Consensus 443 ~~A~~aL~~L~~ 454 (464)
+.|...|..|=.
T Consensus 673 kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 673 KAASSVLDVLWQ 684 (717)
T ss_pred HHHHHHHHHHHH
Confidence 877777665543
No 22
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.60 E-value=7.9e-14 Score=157.29 Aligned_cols=272 Identities=17% Similarity=0.148 Sum_probs=206.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCC--
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISP-- 172 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~-- 172 (464)
++..++.|.+.|+| ++.||+.|++.|+++.. ++ .+|.| +..|.+.+ .+++.....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~----------------~~~~L---~~aL~D~d--~~VR~~Aa~aL 676 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-PG----------------FGPAL---VAALGDGA--AAVRRAAAEGL 676 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-hh----------------HHHHH---HHHHcCCC--HHHHHHHHHHH
Confidence 45577899999988 99999999999998720 00 22222 45554433 222221111
Q ss_pred ---CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 012413 173 ---EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 173 ---~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~ 249 (464)
....+..+.|...|+++++.||..|+.+|..+.. +....|+..|+++++.+|..|+.+|..+.
T Consensus 677 ~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-- 742 (897)
T PRK13800 677 RELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIEAVRALVSVD-- 742 (897)
T ss_pred HHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHHHHHHHhccc--
Confidence 0011233566788889999999999999977642 23456788999999999999999998752
Q ss_pred CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 250 ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 250 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
..+.|..++.+++..+|..++.+|..+... +...++.|..++.++++.+|..|+.+|+++.
T Consensus 743 -----------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 743 -----------DVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred -----------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 245678899999999999999999997432 2234789999999999999999999999874
Q ss_pred cCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 330 SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 330 ~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
..+. .++.++..|.+++..++..|+.+|+.+.. ...++.|+.+|.+++..||..|+++|+.
T Consensus 804 ~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 804 CPPD---------DVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred Ccch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 4321 34668889999999999999999997764 4567999999999999999999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGY 451 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~ 451 (464)
+. .++ ...+.|..++.+++++||..|.++|..
T Consensus 865 ~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 865 WP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred cC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 73 122 246788899999999999999999974
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.53 E-value=1.2e-12 Score=129.39 Aligned_cols=281 Identities=13% Similarity=0.115 Sum_probs=225.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC----CC---HHHHHHHHHHHHHhcC
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----SD---PWTQEHSVTALLNLSL 248 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~----~~---~~v~~~A~~aL~~La~ 248 (464)
...++.|.+...+++.++-++++++|+|++.++.++|..+.+.|+-..++..|+. ++ .+....++..|.|...
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 5688888889999999999999999999999999999999999997777777764 22 4667788888999877
Q ss_pred C-CchHHHHHhcCcHHHHHHHHccC----------------------------------------------CHHHHHHHH
Q 012413 249 H-ENNKTLITNAGAIKSLVYVLKTG----------------------------------------------TETSKQNAA 281 (464)
Q Consensus 249 ~-~~~~~~i~~~g~i~~Lv~lL~~~----------------------------------------------~~~v~~~a~ 281 (464)
+ .+.+..+.+.|+++.|...+.-+ .++......
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 5 67888999999998776555321 122333445
Q ss_pred HHHHHhcccccchhhhhccCChHHHHHHhhcC-Ch-------hhHHHHHHHHHHHhcCcchHHHHHHcC-CHHHHHHhhc
Q 012413 282 CALMSLALIEENKSSIGACGAIPPLVSLLIYG-SS-------RGKKDALTTLYKLCSLKQNKERAVSAG-AVRPLVGMLA 352 (464)
Q Consensus 282 ~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-~~-------~v~~~A~~aL~nL~~~~~~~~~iv~~g-~v~~Lv~lL~ 352 (464)
..|...+.++..+-.+.+.|.+..++++++.- +- ...+.++....-|...++..+.+...+ .++.++..+.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 55566666666677777888888888888762 21 123344444444555566666777666 7889999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCCh
Q 012413 353 GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED-----GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGI 427 (464)
Q Consensus 353 ~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i 427 (464)
+.+.+....+.-+++|++..+.++..+++.|.+..|+.++.. ++.++++.++.+|+|+.- ...++..+...|+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchH
Confidence 999999999999999999999999999999999999999963 567889999999999985 45688899999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 428 PPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 428 ~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+.++..++...|.|..+-.+.|+++.+...
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 999999999999999999999999987543
No 24
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.52 E-value=1.6e-13 Score=150.40 Aligned_cols=270 Identities=19% Similarity=0.156 Sum_probs=224.8
Q ss_pred cCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhccCchhHHHHH
Q 012413 146 LEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQ---------SSSVAIKRSAAAKLRLLAKNRSDNRVLIG 216 (464)
Q Consensus 146 ~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv~~L~---------s~~~~vr~~A~~~L~~La~~~~~~r~~i~ 216 (464)
..+.|.+-+-.|-...|.+|-+..+.+-+...+|..|+..-. .....+|..|..+|.||..++..++..+-
T Consensus 311 ~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred cchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 334443444445557788888888876555666666665432 12345899999999999999888877766
Q ss_pred h-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhccc-c
Q 012413 217 E-SGAVPALVPLLKCSDPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLVYV-LKTGTETSKQNAACALMSLALI-E 291 (464)
Q Consensus 217 ~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~-~ 291 (464)
. .|++..++..|.+...++....+.+|.||++. ...++.+.+.|.+..|+.+ |+...+......+.+||||+.| .
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 4 79999999999999889999999999999996 4567778889999999875 4555667888999999999999 6
Q ss_pred cchhhhhc-cCChHHHHHHhhcC----ChhhHHHHHHHHHHHhc----CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHH
Q 012413 292 ENKSSIGA-CGAIPPLVSLLIYG----SSRGKKDALTTLYKLCS----LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKA 362 (464)
Q Consensus 292 ~~~~~i~~-~g~i~~Li~lL~~~----~~~v~~~A~~aL~nL~~----~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A 362 (464)
+||..|.+ .|++..|+.+|.-. ...+.+.+-++|.|++. ....++.+.+...+..|++.|+++.-.++.++
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 99999988 89999999999754 45677888999998866 45678888899999999999999999999999
Q ss_pred HHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH
Q 012413 363 MVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV 415 (464)
Q Consensus 363 ~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~ 415 (464)
|++|+||. ..+..++.+.+.|+|+.|..++++.+..+-.-++.+|.||..+.+
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999998 789999999999999999999999999999999999999998764
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.49 E-value=6.1e-12 Score=142.08 Aligned_cols=229 Identities=17% Similarity=0.104 Sum_probs=153.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.+.++.|+..|.++++.||..|+..|..+.. .++++.|+.+|+++++.+|..|+.+|..+....
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 4677788888888999999999888876642 357788888888888888888888887764211
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-------------cch----hhhhccCChHHHHHHhhcCChhhH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-------------ENK----SSIGACGAIPPLVSLLIYGSSRGK 318 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-------------~~~----~~i~~~g~i~~Li~lL~~~~~~v~ 318 (464)
...+.|...|+++++.+|..++.+|..+.... ..| ..+...+..+.|..++.++++.||
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR 759 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVR 759 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHH
Confidence 11234445555555555555555554432100 000 000001122345555555666666
Q ss_pred HHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHH
Q 012413 319 KDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVK 398 (464)
Q Consensus 319 ~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 398 (464)
..++.+|+.+.... .+.++.|..+++++++.++..|+.+|+.+... ...+..++..+.+++..
T Consensus 760 ~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~ 822 (897)
T PRK13800 760 IAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQ 822 (897)
T ss_pred HHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChH
Confidence 66666665543311 12367788888888888888888888877542 12346688888888899
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 399 GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+|..|+.+|+.+... ..++.|+.+|.+++..||..|+++|..+
T Consensus 823 VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 823 VRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 999999999887642 3579999999999999999999999987
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.45 E-value=3.2e-12 Score=108.04 Aligned_cols=118 Identities=26% Similarity=0.385 Sum_probs=111.2
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV 415 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~ 415 (464)
.+++.|+++.|+.++.+.+..++..++++|++++.. ++....+.+.|+++.+++++.++++.++..|+++|++|+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999965 8889999999999999999999999999999999999999888
Q ss_pred HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 416 KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 416 ~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.....+.+.|+++.|++++.+.+.++++.+.++|.+|++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888889999999999999999999999999999999874
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=6e-11 Score=118.75 Aligned_cols=281 Identities=16% Similarity=0.190 Sum_probs=210.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...|..||+.|...+.+.-......|..++-- .+++..+.+.|.|..|+.++...+++++...+..|.|++.+...+.+
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 35889999999999988888888999888877 66777788899999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHH------------------------------------------HHhcccccc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACAL------------------------------------------MSLALIEEN 293 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL------------------------------------------~~Ls~~~~~ 293 (464)
++..|.+|.|+.+|.++... .-|...| .|||.+..+
T Consensus 382 Mv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 99999999999999875320 1111122 244444444
Q ss_pred hhhhhccCChHHHHH------------Hh-------------------------hc-CChhhHHHHHHHHHHHhcCcchH
Q 012413 294 KSSIGACGAIPPLVS------------LL-------------------------IY-GSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~------------lL-------------------------~~-~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.+.+.+..++..|.+ ++ .. ++...-..++++|+||...+-.-
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 444444333333222 11 11 12223334556666666655333
Q ss_pred HHHH-HcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHH
Q 012413 336 ERAV-SAGAVRPLVGMLAGQ--GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQL 410 (464)
Q Consensus 336 ~~iv-~~g~v~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L 410 (464)
.+++ ....||.+-..|... ..+++-....+++.++........+..+|.|+.|+++|+. .+++.......+..++
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 4443 477888888888654 3456777888888888888888888889999999999995 5777888888889999
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
..+....+..+.+...-..|++++++.+.++|+-+--+|--++++.++|
T Consensus 620 l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW 668 (791)
T KOG1222|consen 620 LKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW 668 (791)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence 8884444445556677789999999999999999999999999988776
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.40 E-value=7.8e-12 Score=105.65 Aligned_cols=116 Identities=25% Similarity=0.341 Sum_probs=107.7
Q ss_pred hhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-H
Q 012413 296 SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-A 373 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~ 373 (464)
.+.+.|+++.|+++|.+.+..++..++++|++++.. ++....+++.|+++.++.+|.++++.++..++++|++|+.. +
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356889999999999999999999999999999996 78888999999999999999999999999999999999965 4
Q ss_pred hhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 374 EGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 374 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
.....+...|+++.|++++.+.+..++..|+++|++|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 66777888999999999999999999999999999987
No 29
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.38 E-value=1e-10 Score=119.49 Aligned_cols=278 Identities=13% Similarity=0.053 Sum_probs=211.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
....++..|..++..+...|+..|..+...+..........-.+..|...|++ .+.+.+..|+.+|..|...++.|..+
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 34555678888999999999999988876544322211111133455666665 35788889999999999999999999
Q ss_pred HhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCc-
Q 012413 257 TNAGAIKSLVYVLKTG--TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLK- 332 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~- 332 (464)
.+.++++.|+.+|+.. +..++.+++.+++-|+..++........+.|+.|+++++.. -..+.+-++.+|.||...+
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999999763 56899999999999999988777777789999999999875 6779999999999998843
Q ss_pred ------chHHHHHHcCCHHHHHHhhcC--CCHHHHHHHH-------HHHHHHhCCH------------------------
Q 012413 333 ------QNKERAVSAGAVRPLVGMLAG--QGEGMAEKAM-------VVLSLLAGIA------------------------ 373 (464)
Q Consensus 333 ------~~~~~iv~~g~v~~Lv~lL~~--~~~~v~~~A~-------~aL~nLa~~~------------------------ 373 (464)
.....+++.|..+.+-.+-.. .++++.+..- .-+..++.++
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 234556777665544444432 2344422211 1122222211
Q ss_pred hhHHHHHhcC--cHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 374 EGREAIVEEN--GIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 374 ~~~~~i~~~g--~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
++...+-+.+ .+..|+++|. +.++.+..-|+.=||.++.+.|..+..+.+.|+=..+++++.+++++||..|..++.
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4555565544 6899999995 567888899999999999999999999999999999999999999999999999998
Q ss_pred HhhcC
Q 012413 451 YLREP 455 (464)
Q Consensus 451 ~L~~~ 455 (464)
.|.-+
T Consensus 422 klm~~ 426 (429)
T cd00256 422 KLMVH 426 (429)
T ss_pred HHHHh
Confidence 87543
No 30
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.34 E-value=1.5e-10 Score=114.72 Aligned_cols=276 Identities=15% Similarity=0.080 Sum_probs=221.5
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CC-------HHHHHHHHHHHHHhc
Q 012413 177 PTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SD-------PWTQEHSVTALLNLS 247 (464)
Q Consensus 177 ~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~-------~~v~~~A~~aL~~La 247 (464)
..+..+++.+.+ -.++.++-+...|...+.+ +..+-.+.+.|.+.-++.+++. .+ -..-..++....-|.
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence 455566666654 4677778888888888877 5556677789999999999876 22 123345555555566
Q ss_pred CCCchHHHHHhcC-cHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-----CChhhHHHH
Q 012413 248 LHENNKTLITNAG-AIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-----GSSRGKKDA 321 (464)
Q Consensus 248 ~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-----~~~~v~~~A 321 (464)
..++.-+.+...+ .+..++..+.+.|..++..+..+++|++..++++..+++.|.+..|+++|.. ++.+++.++
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 6777777777766 8899999999999999999999999999999999999999999999999975 467788899
Q ss_pred HHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh-hHHHHHh-cCcHHHHHHHHhcCCHH-
Q 012413 322 LTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE-GREAIVE-ENGIAALVEAIEDGSVK- 398 (464)
Q Consensus 322 ~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~- 398 (464)
+.+|+||.....++..+..+|+++.++..++...++++..-.+.|+.+....+ ....+.. ...+..|++-.++++..
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aG 461 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAG 461 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccch
Confidence 99999999999999999999999999999999999999999999999985544 4555554 44788888888877644
Q ss_pred HHHHHHHHHHHHhhcCH--HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 399 GKEFAVLTLLQLCAESV--KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
+--..-+.|..+..++. +-...+.+.|+|+.++.++...+-..+..|.-||..+.
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 77777888888887743 33345667899999999999998888888877776554
No 31
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.6e-10 Score=119.72 Aligned_cols=258 Identities=17% Similarity=0.123 Sum_probs=216.0
Q ss_pred hHHHHHHHHhcCCC-CHHHHHHHHHHH-HHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcC-CCc
Q 012413 176 QPTVKICIDGLQSS-SVAIKRSAAAKL-RLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSL-HEN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~-~~~vr~~A~~~L-~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~-~~~ 251 (464)
..-++.|+..|+.. ++..+..|+.-| ..|...+++.-..+.-...||.|+.+|++ .++++...||+||.+|+. -|.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 35778888888865 888898988888 45566666655555556789999999998 679999999999999998 488
Q ss_pred hHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 252 NKTLITNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
....+++.++||.|+.-|. -...++-++++.+|-.|+... -..+..+|++...+..|.=-+..+++.|+.+..|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999987554 578899999999999998642 2357889999999999988888999999999999999
Q ss_pred --CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC----CHhhHHHHHhcCcHHHHHHHHhcC----CHHHH
Q 012413 331 --LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG----IAEGREAIVEENGIAALVEAIEDG----SVKGK 400 (464)
Q Consensus 331 --~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~----~~~v~ 400 (464)
.++....+++ ++|.|..+|...+....+.++.++..++. .++.-+.+...|.|....+++.-. +..+.
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 4555556666 89999999999999999999999999984 355677888899999999999854 44567
Q ss_pred HHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC
Q 012413 401 EFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG 437 (464)
Q Consensus 401 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 437 (464)
...++.|..+++.++-....+...++...|..+|...
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 7788899999999999999999999999999998763
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.18 E-value=1.1e-09 Score=109.41 Aligned_cols=230 Identities=22% Similarity=0.181 Sum_probs=169.1
Q ss_pred CChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCC-chHHHHHh------cCcHHHHHHHHccCCHHHHHHHHHHHHHhcc
Q 012413 219 GAVPALVPLLKC--SDPWTQEHSVTALLNLSLHE-NNKTLITN------AGAIKSLVYVLKTGTETSKQNAACALMSLAL 289 (464)
Q Consensus 219 g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~-~~~~~i~~------~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~ 289 (464)
+....++.+|+. +++++.+..+..+..+..+. ...+.+.. .....++++++..+|..++..|+..|..|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 335556666654 68899999999999998754 44444443 2257888999999999999999999999987
Q ss_pred cccchhhhhccCChHHHHHHhhc----CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh-----cC--CCHHH
Q 012413 290 IEENKSSIGACGAIPPLVSLLIY----GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML-----AG--QGEGM 358 (464)
Q Consensus 290 ~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL-----~~--~~~~v 358 (464)
....+..-...+.++.+++.+.+ .+...+..++.+|.+|.+.++.+..+.+.|+++.++.++ .+ .+..+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 75443333335667888888876 355677899999999999999999999999999999999 22 23566
Q ss_pred HHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCHH-hHHHHHHcCChHHHHHhhhc
Q 012413 359 AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCAESVK-NRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 359 ~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~s 436 (464)
+.+++.+++.|+.+++..+.+...+.|+.|+++++. ..+++.+-++.++.|+....+. ....|+..|+++.|..+...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 999999999999999999999999999999999995 5789999999999999987654 66778888877777666655
Q ss_pred --CCHHHHHHHHHH
Q 012413 437 --GSVRAKHKAETL 448 (464)
Q Consensus 437 --~~~~v~~~A~~a 448 (464)
+|+++.+.-...
T Consensus 295 k~~Dedl~edl~~L 308 (312)
T PF03224_consen 295 KWSDEDLTEDLEFL 308 (312)
T ss_dssp --SSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 478887764443
No 33
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=5.6e-09 Score=114.63 Aligned_cols=372 Identities=16% Similarity=0.143 Sum_probs=225.1
Q ss_pred HHhhhhhhhhccCCcccc------cCCcchhHHHHHHhhhhh--cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccc
Q 012413 74 IDMRLGELASKTNDAKSV------KSTISEDDYLNVSQAFSD--FSVCSSDISGELQRLASLPSPENILRQPNENNCQAE 145 (464)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~------~~~~~e~~~~~L~~ll~~--~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~ 145 (464)
.-+.|+.|-++||+-.+. .-...+.....|..++.. ++.+|+-++-.++|+++. ..+.+-... ..+
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~--~w~~l~~e~----~~s 79 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTK--HWSRLSAEV----QQS 79 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHH--HhhcCCHHH----HHH
Confidence 345566666666332220 112233366677777775 899999888888888764 111111000 000
Q ss_pred cCCCchhhhhhhcccC----------chhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHH-H
Q 012413 146 LEPEPEPCLGFLQREN----------FSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRV-L 214 (464)
Q Consensus 146 ~~p~l~~lv~~L~~~~----------~s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~-~ 214 (464)
+. ..++..++.+. --.++.....++.|+.+++.|+++.+++++..|+.|+.+|..+...-...-. .
T Consensus 80 ik---s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 80 IK---SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HH---HHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 11 11122333222 1234444455567899999999999999999999999999988754221100 1
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHh------------------------cCcHHHHHHHH
Q 012413 215 IGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITN------------------------AGAIKSLVYVL 269 (464)
Q Consensus 215 i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~------------------------~g~i~~Lv~lL 269 (464)
+ ....+.+.+.+.+++..||..|+.+++.++.. ++++..... .+++..|+.++
T Consensus 157 ~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 157 L--DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred H--HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 1 02344455666665555999999999998763 223222111 11222333322
Q ss_pred cc------------------------CCHHHHHHHHHHHHHhccccc--chh----------------------------
Q 012413 270 KT------------------------GTETSKQNAACALMSLALIEE--NKS---------------------------- 295 (464)
Q Consensus 270 ~~------------------------~~~~v~~~a~~aL~~Ls~~~~--~~~---------------------------- 295 (464)
.. -+..+|..|+..|..++.... .|.
T Consensus 235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 21 245667777777766654310 000
Q ss_pred ----------------hhhc-----cC---ChH----HHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHH
Q 012413 296 ----------------SIGA-----CG---AIP----PLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRP 346 (464)
Q Consensus 296 ----------------~i~~-----~g---~i~----~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~ 346 (464)
..++ .| .+| .+-.+|.+.+..-|.+++.+|+.++.. .+.....+ ..+++.
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~ 393 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPI 393 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHH
Confidence 0000 01 223 333455667777788888888877663 23222222 237888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 012413 347 LVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAESVKNRGLLVRE 424 (464)
Q Consensus 347 Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 424 (464)
++..|+++++.||..|+.+++.++ .....-+.-..+-.++.|+..+.+. +++++..|+.+|-|+....+.....=.=.
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd 473 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD 473 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 899999999999999999999999 4455555555567788999999864 67999999999999987654322211113
Q ss_pred CChH-HHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 425 GGIP-PLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 425 g~i~-~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+.++ .|..+++++.+.+++.++.+|+..++.-+
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 4555 45556677889999999999999886433
No 34
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.16 E-value=5.9e-09 Score=103.62 Aligned_cols=278 Identities=12% Similarity=0.053 Sum_probs=210.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
.....+..|..++..+...+.+++..++..........-..=....|...+.+ .+++....|+.+|..+...++.|..+
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 35666888999999998888899988876533221110000112334445555 77888899999999999999999999
Q ss_pred HhcCcHHHHHHHHcc--CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCc-
Q 012413 257 TNAGAIKSLVYVLKT--GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLK- 332 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~- 332 (464)
+.++++..++..+.+ .+..++.+.+.+++-|+.++...+.+...+.|+.|.+++++. -..|.+-.+.++.|+....
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999943 478999999999999999988888887789999999999986 6779999999999999855
Q ss_pred ------chHHHHHHcCCHHHHHHhhcC--CCHHHHHHHH-------HHHHHHhCCH------------------------
Q 012413 333 ------QNKERAVSAGAVRPLVGMLAG--QGEGMAEKAM-------VVLSLLAGIA------------------------ 373 (464)
Q Consensus 333 ------~~~~~iv~~g~v~~Lv~lL~~--~~~~v~~~A~-------~aL~nLa~~~------------------------ 373 (464)
+....++..++.+.+-.+-.. .++++....- .-.-.|+.++
T Consensus 275 ~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~ 354 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR 354 (442)
T ss_pred hhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH
Confidence 344566777666665555432 2344432221 1122223221
Q ss_pred hhHHHHHhcC--cHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 374 EGREAIVEEN--GIAALVEAIEDG-SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 374 ~~~~~i~~~g--~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
++...+-+.. .+..|+.+|..+ ++.+-.-|+.=++....+-|+.+..+.+-||=+.+++++.+++++||..|..|+.
T Consensus 355 eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 355 ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4455555433 789999999854 5888999999999999999999999999999999999999999999999999998
Q ss_pred HhhcC
Q 012413 451 YLREP 455 (464)
Q Consensus 451 ~L~~~ 455 (464)
.|--+
T Consensus 435 ~lm~~ 439 (442)
T KOG2759|consen 435 KLMVH 439 (442)
T ss_pred HHHhh
Confidence 77543
No 35
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.14 E-value=5.2e-09 Score=107.45 Aligned_cols=213 Identities=18% Similarity=0.073 Sum_probs=156.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..+..|+..|.+.++.|+..++.+|+.+ ...++.+.|+.+|++.++.++..++.+++..
T Consensus 86 ~~~~~L~~~L~d~~~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r---------- 144 (410)
T TIGR02270 86 LDLRSVLAVLQAGPEGLCAGIQAALGWL-----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH---------- 144 (410)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcC-----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh----------
Confidence 3478888888888888888888888533 3446778888888888888888888777652
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHH
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKE 336 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 336 (464)
.....+.|..+|++.++.++..|+.+|+.+ ....+++.|...+.+.++.||..|+.++..+..
T Consensus 145 -~~~~~~~L~~~L~d~d~~Vra~A~raLG~l----------~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~------ 207 (410)
T TIGR02270 145 -RHDPGPALEAALTHEDALVRAAALRALGEL----------PRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS------ 207 (410)
T ss_pred -ccChHHHHHHHhcCCCHHHHHHHHHHHHhh----------ccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC------
Confidence 223466788888888888888888888886 445667888888888888888888888866532
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.+++..+..+....+......++.++... .. ...++.|..+++++. ++..++.+|+.+...
T Consensus 208 ----~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~---------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--- 268 (410)
T TIGR02270 208 ----RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GG---------PDAQAWLRELLQAAA--TRREALRAVGLVGDV--- 268 (410)
T ss_pred ----HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cc---------hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc---
Confidence 22455566555555555555445555433 11 257888888888754 899999999998753
Q ss_pred hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 417 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
..++.|+..+.+.. +++.|.++++.|+.-+
T Consensus 269 --------~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 269 --------EAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred --------chHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 47899999886543 9999999999998744
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.11 E-value=3.2e-09 Score=106.07 Aligned_cols=214 Identities=18% Similarity=0.114 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHh------cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCc
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGE------SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGA 261 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~------~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~ 261 (464)
+.+.++....+..+..+..+++...+.+.. ...+.+++.++.++|..++..|+..|..+....+.+..-...+.
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 568899999999999999888877666665 23688899999999999999999999999876544433333567
Q ss_pred HHHHHHHHcc----CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh-----hc--CChhhHHHHHHHHHHHhc
Q 012413 262 IKSLVYVLKT----GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL-----IY--GSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 262 i~~Lv~lL~~----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL-----~~--~~~~v~~~A~~aL~nL~~ 330 (464)
++.++..|.+ ++.+++..++.+|.+|...++.|..+.+.|+++.|..+| .+ .+.+++..++-++|-|+-
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence 7888888875 455678999999999999999999999999999999999 22 266788999999999999
Q ss_pred CcchHHHHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCHh--hHHHHHhcCcHHHHHHHHhc--CCHHHHH
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIAE--GREAIVEENGIAALVEAIED--GSVKGKE 401 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~--~~~~i~~~g~i~~Lv~lL~~--~~~~v~~ 401 (464)
+++..+.+...+.++.|+.+++. ..+.+.+-++.+|.||..... ....++..|+++.+-.+... +|+++..
T Consensus 228 ~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 228 EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999965 457889999999999996655 78888887766666555553 3555544
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.07 E-value=9.3e-09 Score=109.77 Aligned_cols=254 Identities=20% Similarity=0.202 Sum_probs=181.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+..++.+.+.+.++++.||+.|+.++..+.+..++. +... .++.+..+|.+.++.++..|+.++..+..+++....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~ 188 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh
Confidence 356667788889999999999999999998775543 2222 689999999999999999999999999111211111
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
.-...++.|.+++...++-++...+..|..++.... .... ...++.+..++.+.++.+...++.++..+...+.
T Consensus 189 -~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~- 263 (526)
T PF01602_consen 189 -LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE- 263 (526)
T ss_dssp -HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-
T ss_pred -hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-
Confidence 112245556666678899999999999998876532 2211 3457888888888888999999999988877655
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhc
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~ 413 (464)
.-..+++.|+.++.+++..++..++..|..++... ...+. .....+..+. +++..++..++..|..++..
T Consensus 264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 33347788999999888889999999999998543 12222 2333344555 78888999999999998853
Q ss_pred CHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 012413 414 SVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 414 ~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~ 454 (464)
.+... +++.|...+.. ++++++..+..++..++.
T Consensus 335 --~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 335 --SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp --HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred --cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 33333 47777777744 477888888888887765
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.06 E-value=6.5e-09 Score=110.99 Aligned_cols=259 Identities=20% Similarity=0.173 Sum_probs=166.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
.++.+.+.|.+.++.|+..|+.++..+ +.++..... .-...+..|.+++...+|+++...+..|..++........
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~-- 228 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD-- 228 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--
Confidence 478888889999999999999999988 332222111 1124455566666789999999999999988875432221
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKER 337 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 337 (464)
....++.+..++++.++.+...++.++..+..... .-..+++.|+.+|.+.++.++..++..|..++... ..
T Consensus 229 ~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~ 300 (526)
T PF01602_consen 229 KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PP 300 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---ch
Confidence 04577888888888888888899888888766544 23345788889998888889999999988888744 11
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCHH
Q 012413 338 AVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.+. .....+..+..+++..++..++.+|..++....... +++.|...+.+ .+.+++..++..++.++...+.
T Consensus 301 ~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 301 AVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred hhh-hhhhhhheecCCCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 222 222223333347778888888888888875322111 45556666633 3555666666666665532110
Q ss_pred h---------------------------HHHHHHc-----CChHHHHHhhhc-CCHHHHHHHHHHHHHhhcC
Q 012413 417 N---------------------------RGLLVRE-----GGIPPLVALSQT-GSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 417 ~---------------------------~~~i~~~-----g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~~ 455 (464)
. +..+... ..+..|++.+.+ .++.++..+.|.++..++.
T Consensus 374 ~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 445 (526)
T PF01602_consen 374 DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGEL 445 (526)
T ss_dssp SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence 0 1111111 136777777766 4678888888888876653
No 39
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=4e-09 Score=105.95 Aligned_cols=199 Identities=19% Similarity=0.244 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc
Q 012413 233 PWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 233 ~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~ 312 (464)
..+.+.|...|.|++.+-..--++.....|..||+.|...+.++.......|..|+...+++..+.+.|.+..|++++..
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 45677899999999988766678888999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH
Q 012413 313 GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI 392 (464)
Q Consensus 313 ~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL 392 (464)
.++.++...+..|.||+-....+.+++..|.+|.|..+|.++.. ..-|+..|+.|+..+..+..+....+|+.++..+
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987543 4568889999999999999999999999999988
Q ss_pred hcCCHHHHHHHHHHH-HHHhhcCHHhHHHHHHcCChHHHHHhh
Q 012413 393 EDGSVKGKEFAVLTL-LQLCAESVKNRGLLVREGGIPPLVALS 434 (464)
Q Consensus 393 ~~~~~~v~~~A~~aL-~~L~~~~~~~~~~i~~~g~i~~Lv~lL 434 (464)
-+....-...++.++ -|||.. ..+.+.+.+..++..|.+..
T Consensus 435 ~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 435 LSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred HhcCCceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHH
Confidence 765332223333333 456543 34555555666677666654
No 40
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.1e-08 Score=95.25 Aligned_cols=184 Identities=22% Similarity=0.194 Sum_probs=156.3
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHH
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSL 265 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~L 265 (464)
.+.+.+-++.|+.-|..++.+ -++...+...|++.+|+..+++.++++|..|+++|+.++.+ |..+..+.+.|+.+.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 456788899999999999877 77778888999999999999999999999999999999985 7888999999999999
Q ss_pred HHHHccC-CHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhc--CChhhHHHHHHHHHHHhcC-cchHHHHHH
Q 012413 266 VYVLKTG-TETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIY--GSSRGKKDALTTLYKLCSL-KQNKERAVS 340 (464)
Q Consensus 266 v~lL~~~-~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~A~~aL~nL~~~-~~~~~~iv~ 340 (464)
+..|.+. +..++..|+.|+..+-.+ +.+...+...+++..|..+|.+ .+..+++.++..+..|... ......+-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999865 567889999999999887 5677888888889999999999 4778889999999999884 445554445
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 341 AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 341 ~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
.|....++.+....+.++.+.+..++..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 6666667777777788888888887776663
No 41
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=5.6e-08 Score=102.78 Aligned_cols=275 Identities=17% Similarity=0.184 Sum_probs=212.8
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCc-
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHEN- 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~- 251 (464)
..+|+.|.+.+.+ .-.+-|+.|++.|..+++. .|..+ ...|+++|++.|+. .|+++...++..+.++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 4577777877765 4578899999999999965 44554 45678999999987 689999999999999987653
Q ss_pred ------hH----------H-HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhc-cCChHHHHHHhh
Q 012413 252 ------NK----------T-LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGA-CGAIPPLVSLLI 311 (464)
Q Consensus 252 ------~~----------~-~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~-~g~i~~Li~lL~ 311 (464)
.+ . .+...+.|..|+..+...|..+|..+...|.++-.+ .+.++.+.. .-+|..|+.+|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 1 123477899999999999999999999999998776 466776665 778999999999
Q ss_pred cCChhhHHHHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCC----HHHHHHHHHHHHHHh-CCHhhHHHHHhcCcH
Q 012413 312 YGSSRGKKDALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQG----EGMAEKAMVVLSLLA-GIAEGREAIVEENGI 385 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~----~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i 385 (464)
+....+|..++-.|..|++.....++++. ++++..|+.++...+ .-|.+.++..|-||- .+..++..+.+.+-|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999998777777776 889999999997543 357899999999999 456778888888899
Q ss_pred HHHHHHHhc---CCH------HHH----HHHHHHHHHHhhcC------HHhHHHHHHcCChHHHHHhhhcCC--HHHHHH
Q 012413 386 AALVEAIED---GSV------KGK----EFAVLTLLQLCAES------VKNRGLLVREGGIPPLVALSQTGS--VRAKHK 444 (464)
Q Consensus 386 ~~Lv~lL~~---~~~------~v~----~~A~~aL~~L~~~~------~~~~~~i~~~g~i~~Lv~lL~s~~--~~v~~~ 444 (464)
+.|.++|.. .+. .-| ..++.++..+...+ ..++..+...+++..|..++.++. .+++.-
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 999988873 221 112 23445555554321 123467888999999999998873 377766
Q ss_pred HHHHHHHhhc
Q 012413 445 AETLLGYLRE 454 (464)
Q Consensus 445 A~~aL~~L~~ 454 (464)
+-.++....+
T Consensus 337 siitvAevVR 346 (970)
T KOG0946|consen 337 SIITVAEVVR 346 (970)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.9e-08 Score=93.79 Aligned_cols=183 Identities=21% Similarity=0.203 Sum_probs=161.0
Q ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHH
Q 012413 271 TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVG 349 (464)
Q Consensus 271 ~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~ 349 (464)
+.+.+-+.-|..-|..++.+-++...+...|++.+++..+.+.+..+|..|+++|+..+. ++..++.+++.|+.+.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 346777888888888888888999999999999999999999999999999999999999 6678899999999999999
Q ss_pred hhcCCC-HHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcC
Q 012413 350 MLAGQG-EGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQLCAESVKNRGLLVREG 425 (464)
Q Consensus 350 lL~~~~-~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 425 (464)
++...+ ..++.+|+.+++.+- .++.+...+...+|...|...+.+ .+...+..++..+..|.......+..+...|
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 997655 456799999999999 578899999999999999999998 6788999999999999988877778888889
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 426 GIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 426 ~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
....+..+....+.++++.+..++-.+.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 8888888888888888888877765443
No 43
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.95 E-value=8.6e-08 Score=98.51 Aligned_cols=216 Identities=14% Similarity=0.028 Sum_probs=163.0
Q ss_pred hHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
...++.|+..|. .++.+++..++.+|.. .+ ...++..|+..|.+.++.++..++.+|+.+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~---------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA--QE---------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG------- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc--cC---------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------
Confidence 467888899994 6778887776666631 11 1124899999999999999999999997643
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
..+..+.|+.+|++.++.++..++.++... .....+.++.+|++.++.|+..|+.+|+.+..
T Consensus 115 ---~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 115 ---GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred ---chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 456788999999999999999888777762 22356889999999999999999999998643
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
...++.|...+.+.++.|+..|++++..+.. ..++..+..+...........++.++.... .
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~--~ 238 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG--G 238 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhccCccHHHHHHHHHHhCC--c
Confidence 4477888899999999999999999986654 244566666555544444444444444432 1
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
...++.|..+++++. ++..+.++|+.+.+.+
T Consensus 239 ---------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~ 269 (410)
T TIGR02270 239 ---------PDAQAWLRELLQAAA--TRREALRAVGLVGDVE 269 (410)
T ss_pred ---------hhHHHHHHHHhcChh--hHHHHHHHHHHcCCcc
Confidence 146888999998855 9999999999887654
No 44
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.92 E-value=4e-08 Score=98.50 Aligned_cols=267 Identities=16% Similarity=0.177 Sum_probs=193.7
Q ss_pred hHHHHHHHHhcCCCCHH--HHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC-Cc
Q 012413 176 QPTVKICIDGLQSSSVA--IKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLH-EN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~--vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~-~~ 251 (464)
.+.+..|++++..++.+ ||.+|.+.|..+.. .++++.+...| +..++.+-+. ..++..+..+..|.++-+| ++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 45677788999988755 59999999977754 45677777766 5666666554 6688999999999999997 57
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
..+.+++.|++..++.-.+..++.+...++.+|.|++.+ .+.+..+++..+-..|..+-.+.+.-++..||-+++.|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 788999999999999999999999999999999999988 467888889888888888888888889999999999999
Q ss_pred cCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 330 SLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 330 ~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
.+++.-..+...|.+..+--++.+.++.-... .+ . ...+++ ...-++.|+.+|.+..-+.|-.++.-++.
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR--D~-h---d~aQG~----~~d~LqRLvPlLdS~R~EAq~i~AF~l~~ 405 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRFAR--DA-H---DYAQGR----GPDDLQRLVPLLDSNRLEAQCIGAFYLCA 405 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchhhh--hh-h---hhhccC----ChHHHHHhhhhhhcchhhhhhhHHHHHHH
Confidence 98876666666665544433444444321110 00 0 000000 02257778888886555444444444433
Q ss_pred Hhhc-CHHhHH-HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 410 LCAE-SVKNRG-LLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 410 L~~~-~~~~~~-~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
=+.- +..++. .+.+-|+|+.|.++..+.+.-...-|.+||..|.+.
T Consensus 406 EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 406 EAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 2221 222333 456679999999999988888888899999988764
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=4.1e-08 Score=102.12 Aligned_cols=272 Identities=13% Similarity=0.085 Sum_probs=189.1
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH-h---cCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG-E---SGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~-~---~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
.+|+.+++.|..+|.+++....+.|..+|..++.++.+.-+.-. . .-.+|.++++.++++|.+|..|..++.....
T Consensus 124 ~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 124 QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII 203 (885)
T ss_pred ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence 45688999999999999999999999999999988765432211 1 2358889999999999999999999977654
Q ss_pred CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 249 HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
.....-.+.-...+..|..+-.+++++||.+.|.+|..|-.....|-.---.+.+..++..-.+.+..|...||.....+
T Consensus 204 ~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 204 IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 32221122224467778888889999999999999999865422111111145678888888888999999999999999
Q ss_pred hcCcchHHHHHH--cCCHHHHHHhhcCCCH--------------------------------------------------
Q 012413 329 CSLKQNKERAVS--AGAVRPLVGMLAGQGE-------------------------------------------------- 356 (464)
Q Consensus 329 ~~~~~~~~~iv~--~g~v~~Lv~lL~~~~~-------------------------------------------------- 356 (464)
+..+-.+..+.. ...+|.|+.-+...+.
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 998855554432 4577777764421110
Q ss_pred ------HHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH----hcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc--
Q 012413 357 ------GMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI----EDGSVKGKEFAVLTLLQLCAESVKNRGLLVRE-- 424 (464)
Q Consensus 357 ------~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-- 424 (464)
.+|.-.+.+|--|+ .+.....++.++-+| .++.-.+|+.++.+||.++.+.- .-+...
T Consensus 364 D~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~Lp 433 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHLP 433 (885)
T ss_pred cccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccchH
Confidence 01222233333332 222344455555444 45678899999999999985421 112221
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 425 GGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 425 g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..++.|+.+|.+..+-||..++|+|...+.
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 357888999999999999999999988765
No 46
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.89 E-value=1.7e-07 Score=94.35 Aligned_cols=188 Identities=27% Similarity=0.302 Sum_probs=153.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..++.+++.+.+.+..+|..|+..++.+. ..-+++.|..+|.+.++.+|..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 67888899999999999999999975443 3468999999999999999999999987764
Q ss_pred HhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCCh------------hhHHHHHH
Q 012413 257 TNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSS------------RGKKDALT 323 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~------------~v~~~A~~ 323 (464)
...+++.|+.+|. +++..+|..++++|+.+ .+..++.+++..+.+... .++..+..
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKL----------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 3458999999999 58999999999999997 455568999999988662 34555555
Q ss_pred HHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHH
Q 012413 324 TLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFA 403 (464)
Q Consensus 324 aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 403 (464)
+|+.+ .+...++.+...+.+....++..|+.+|+.+.... ..+...+...+.+.+..++..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 55543 33457889999999999999999999999888644 3566788888888899999999
Q ss_pred HHHHHHHhhc
Q 012413 404 VLTLLQLCAE 413 (464)
Q Consensus 404 ~~aL~~L~~~ 413 (464)
+.+|+.+...
T Consensus 234 ~~~l~~~~~~ 243 (335)
T COG1413 234 LLALGEIGDE 243 (335)
T ss_pred HHHhcccCcc
Confidence 9998888753
No 47
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=8.2e-07 Score=85.32 Aligned_cols=274 Identities=17% Similarity=0.168 Sum_probs=194.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG-ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~-~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
+..+++.|.+.+|.||..|+..|..++.. ..+.... +.-.++.|.+++...++ -+.|+.+|.|++..+..++.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 44568899999999999999999888776 2222222 24568889999988777 7889999999999999988888
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--c----CChHHHHHHhhcC--Chhh-HHHHHHHHHHH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--C----GAIPPLVSLLIYG--SSRG-KKDALTTLYKL 328 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~----g~i~~Li~lL~~~--~~~v-~~~A~~aL~nL 328 (464)
.. .+..++..+.++...+-...|..|.||+..++....+.. . .++..++.-+-+. +... ....+.++.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 77 777888888888788888999999999988654333321 1 3444454443332 3222 34567789999
Q ss_pred hcCcchHHHHHHcCCHHH-HHHhhcCCCHHH-HHHHHHHHHHHhCCHhhHHHHHhcC--cHHHHH---------------
Q 012413 329 CSLKQNKERAVSAGAVRP-LVGMLAGQGEGM-AEKAMVVLSLLAGIAEGREAIVEEN--GIAALV--------------- 389 (464)
Q Consensus 329 ~~~~~~~~~iv~~g~v~~-Lv~lL~~~~~~v-~~~A~~aL~nLa~~~~~~~~i~~~g--~i~~Lv--------------- 389 (464)
++.+.++..+.+...++. .+--+.+++..+ +...++.|.|.|-.......++..+ ..+.++
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~ 239 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA 239 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence 999999888876554433 222233455666 4457899999986655555555422 233333
Q ss_pred ------HHHh-----cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcCCC
Q 012413 390 ------EAIE-----DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 390 ------~lL~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+++. ++++.++..-+.+|..||.. ...|..+++.|+-+.|.++-+. .++++++.+.....++.+-.+
T Consensus 240 ~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 240 KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEP 318 (353)
T ss_pred cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhccc
Confidence 3443 24788999999999999965 4678889999977777776655 478999999999988887444
Q ss_pred C
Q 012413 458 E 458 (464)
Q Consensus 458 ~ 458 (464)
+
T Consensus 319 ~ 319 (353)
T KOG2973|consen 319 E 319 (353)
T ss_pred c
Confidence 3
No 48
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.86 E-value=7.3e-07 Score=89.81 Aligned_cols=184 Identities=27% Similarity=0.297 Sum_probs=137.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
...++.+...|.+.++.+|..|+.+|+.+- ...+++.|+.+|. +.+..++..|+++|+.+-
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~------- 134 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELG-----------DPEAVPPLVELLENDENEGVRAAAARALGKLG------- 134 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC-------
Confidence 457777788888999999999998775443 3467889999998 588999999999998765
Q ss_pred HHHhcCcHHHHHHHHccCCH------------HHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHH
Q 012413 255 LITNAGAIKSLVYVLKTGTE------------TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDAL 322 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~------------~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~ 322 (464)
+..++..|+..+++... .++..++.+|..+ .+...++.++.++.+.+..++..|.
T Consensus 135 ---~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa 201 (335)
T COG1413 135 ---DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAA 201 (335)
T ss_pred ---chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHH
Confidence 33457788888877652 4566666666664 6667899999999999999999999
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHH
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEF 402 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 402 (464)
.+|+.+.... ..+.+.+...+.+....++..++.+|+.+-. ...+..++..+.+.+..++..
T Consensus 202 ~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~ 263 (335)
T COG1413 202 SALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD----------EEAVDALAKALEDEDVILALL 263 (335)
T ss_pred HHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----------chhHHHHHHHHhccchHHHHH
Confidence 9999986644 3466888889999999999999999987764 234555555555555544444
Q ss_pred HHHHHH
Q 012413 403 AVLTLL 408 (464)
Q Consensus 403 A~~aL~ 408 (464)
+...++
T Consensus 264 ~~~~~~ 269 (335)
T COG1413 264 AAAALG 269 (335)
T ss_pred HHHHhc
Confidence 444443
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=7.4e-07 Score=98.34 Aligned_cols=343 Identities=15% Similarity=0.114 Sum_probs=207.7
Q ss_pred HHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCC-CchhhhhhhcccCc--hhhHhhhcCC---
Q 012413 100 YLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEP-EPEPCLGFLQRENF--STEIIESISP--- 172 (464)
Q Consensus 100 ~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p-~l~~lv~~L~~~~~--s~~i~~~~~~--- 172 (464)
..=+.|-+.| ...+|..++++++-.+...+........ ..-++| .+..+...++..+. ...+.+.+.+
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~-----~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK-----FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH-----HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 3334445555 3338888999999887766411111110 011455 22222333333332 1222222211
Q ss_pred ---CCchHHHHHHH----Hhc--CCCCHHHHHHHHHHHHHHhccCchhHHHHHh--cCChHHHHHhhcC--CC-------
Q 012413 173 ---EDLQPTVKICI----DGL--QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE--SGAVPALVPLLKC--SD------- 232 (464)
Q Consensus 173 ---~~~~~~v~~Lv----~~L--~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~--~g~i~~Ll~lL~~--~~------- 232 (464)
.-+.+.+..++ +.- ++-+..+|..|+..|..++..-+...+.... ...++.++.++.. .|
T Consensus 236 ~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 236 SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 11223333322 222 3467889999999999998874443333222 2235555555433 11
Q ss_pred -------HHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc-cCChH
Q 012413 233 -------PWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA-CGAIP 304 (464)
Q Consensus 233 -------~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~ 304 (464)
..-...|..+|-.++.+-.++..+ .-.++.+-.+|++.+..-|..++.+|..++..-. +..... ...++
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~ 392 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILP 392 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHH
Confidence 124667888888888764443321 2245667778899999999999999999875421 111111 34567
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhCC-HhhHHHHHh
Q 012413 305 PLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQG-EGMAEKAMVVLSLLAGI-AEGREAIVE 381 (464)
Q Consensus 305 ~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~-~~~~~~i~~ 381 (464)
..+..|.++++.||.+|+.+++.++.+ ....++...+-.++.|+..+.+.. ..++.+|+.+|-|+... +...-.=.=
T Consensus 393 ~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL 472 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL 472 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 777888999999999999999999983 444445555557888999997765 68999999999999843 221111111
Q ss_pred cCcHH-HHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH--cCChHHHHHhhhcCC-H---HHHHHHHHHHHHhh
Q 012413 382 ENGIA-ALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR--EGGIPPLVALSQTGS-V---RAKHKAETLLGYLR 453 (464)
Q Consensus 382 ~g~i~-~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~s~~-~---~v~~~A~~aL~~L~ 453 (464)
.+.+. .+..++.++.+.+++.++.+|+..+.. .+..+.. .-.+|.|...|++.+ . .+|.+....+.-++
T Consensus 473 d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A---A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 473 DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA---AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH---HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 45555 444455578899999999999999853 3333433 356899999998865 3 45555555555444
No 50
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.81 E-value=2.4e-07 Score=96.64 Aligned_cols=211 Identities=17% Similarity=0.107 Sum_probs=156.4
Q ss_pred HHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHH---HhcCC--CchHHHHHhcCcHHHHHHHHccCCHHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLKC------SDPWTQEHSVTALL---NLSLH--ENNKTLITNAGAIKSLVYVLKTGTETSKQNAA 281 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~------~~~~v~~~A~~aL~---~La~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 281 (464)
....+...++.+++++.. .+++.+..++.-.. ..+.. -.+++.+.+.-....+..+....|...+..||
T Consensus 319 ~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~ 398 (678)
T KOG1293|consen 319 LPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAAL 398 (678)
T ss_pred hHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHH
Confidence 334455566666666542 33444433333221 12221 23455555554555555555667888999999
Q ss_pred HHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHH
Q 012413 282 CALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMA 359 (464)
Q Consensus 282 ~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~ 359 (464)
.++.+++.. ...+...-+..++.+|++++.+++..+...++++|+|+.. ....+.+|++.|+++.+..++.+.+..++
T Consensus 399 l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r 478 (678)
T KOG1293|consen 399 LCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSR 478 (678)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHH
Confidence 999888765 3444445667789999999999999999999999999988 78899999999999999999999999999
Q ss_pred HHHHHHHHHHhCC--HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 012413 360 EKAMVVLSLLAGI--AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR 423 (464)
Q Consensus 360 ~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 423 (464)
..+.|+|+++.-+ +..+......-....++.++.+++..|++.|...|+||.+.+.+.-+.+.+
T Consensus 479 ~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 479 ANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999999999943 334555555556788899999999999999999999999987666554444
No 51
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.81 E-value=2.5e-06 Score=87.57 Aligned_cols=283 Identities=14% Similarity=0.068 Sum_probs=199.1
Q ss_pred CchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhc-----CChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012413 174 DLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGES-----GAVPALVPLLKCSDPWTQEHSVTALLNLS 247 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~-----g~i~~Ll~lL~~~~~~v~~~A~~aL~~La 247 (464)
+....+..++.+|+. ...++....+..+..+...++.....+.+. ....+++.+|..++..+...|+..|..+.
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 335677778888875 568888888888888888877766666653 56788888999999999999999999987
Q ss_pred CC-CchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--ChhhHHHHHH
Q 012413 248 LH-ENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--SSRGKKDALT 323 (464)
Q Consensus 248 ~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~ 323 (464)
.. +.........-.+.-|...|+.+ +...+..++.+|..|...++.|..+.+.++++.|+.+|+.. +.+....++-
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 53 22111111111333455566554 46778888899999999999999999988999999999864 4578899999
Q ss_pred HHHHHhcCcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCH-------hhHHHHHhcCcHHHHHHHHhc-
Q 012413 324 TLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIA-------EGREAIVEENGIAALVEAIED- 394 (464)
Q Consensus 324 aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~-------~~~~~i~~~g~i~~Lv~lL~~- 394 (464)
++|-|+-.++..+.+...+.++.|+.+++.. .+.+.+-++.+|.||...+ .....++..|+.+ +++.|..
T Consensus 210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~r 288 (429)
T cd00256 210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQR 288 (429)
T ss_pred HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcC
Confidence 9999999988888888889999999999754 4778888999999999632 2344556556544 5555553
Q ss_pred --CCHHHHHHHHH-------HHHHHhhc--------------CH---------HhHHHHHHc--CChHHHHHhhh-cCCH
Q 012413 395 --GSVKGKEFAVL-------TLLQLCAE--------------SV---------KNRGLLVRE--GGIPPLVALSQ-TGSV 439 (464)
Q Consensus 395 --~~~~v~~~A~~-------aL~~L~~~--------------~~---------~~~~~i~~~--g~i~~Lv~lL~-s~~~ 439 (464)
.|+++..--.. .+-.++.. +| ++...+.+. .++..|+++|. ++++
T Consensus 289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 34544332111 11122210 11 223444443 45688889985 4567
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 012413 440 RAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 440 ~v~~~A~~aL~~L~~~~~ 457 (464)
.+..-|+-=++.+.++-|
T Consensus 369 ~~laVAc~Dige~vr~~P 386 (429)
T cd00256 369 IILAVACHDIGEYVRHYP 386 (429)
T ss_pred ceeehhhhhHHHHHHHCc
Confidence 777777777777777543
No 52
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.76 E-value=6.7e-07 Score=93.43 Aligned_cols=269 Identities=13% Similarity=0.039 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLV 266 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv 266 (464)
..|.+++.+|+.++.+++..-...+..+-...+..+|+++|.+++..++..+..+|+|+... .+.|..+...|+|..|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 46788999999999999888777777766788999999999999999999999999999986 78999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhh--hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHHc--
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSS--IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKERAVSA-- 341 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~--i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~-- 341 (464)
.++.+.+..++..+.|+|.++..+.+.... ....=.-..++.+..+++.+|++.+...|+||+-+ .+..+.+++.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 999999999999999999999988544332 22222345677788889999999999999999875 3555555542
Q ss_pred CCHHHHHHhhc-CCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHH--------HhcCCHHHHHHHHHHHHHHh
Q 012413 342 GAVRPLVGMLA-GQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEA--------IEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 342 g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~l--------L~~~~~~v~~~A~~aL~~L~ 411 (464)
..+....-.++ .....+......-+.++. ..+..+.... .|..+.++.. ..+...+...++.|.+.++.
T Consensus 548 ~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am-~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~ 626 (678)
T KOG1293|consen 548 DVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAM-EGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLT 626 (678)
T ss_pred HHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcc
Confidence 12222222221 112222222222223332 2222111111 1222222211 11345677889999999998
Q ss_pred hcCH---HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCC
Q 012413 412 AESV---KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGP 460 (464)
Q Consensus 412 ~~~~---~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~ 460 (464)
.... ..+...--.++.++.... .+.++-....|+..+.-.+.+..+
T Consensus 627 ~~~s~s~~dr~~~~~n~i~e~~~k~---~~sd~~la~ki~~~~~l~~~~~~s 675 (678)
T KOG1293|consen 627 TTDSSSNFDRSNLKLNCIWELNNKL---WNSDVSLATKIAIENGLEPGHSPS 675 (678)
T ss_pred CCCCCcccchhhccccceechhhhc---ccchhHHHHHHHHHhcccccCCCC
Confidence 6522 223333334444444333 344567777787777766555443
No 53
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=4.4e-07 Score=94.63 Aligned_cols=274 Identities=15% Similarity=0.089 Sum_probs=179.0
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+...++.+++..+++++.+|..|+.++-.+.-.....--.- =...++.|..+-.+++++||...|.+|..|..-...|-
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 35688888999999999999999999965544322211111 13567777788888999999999999998865322221
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHH----------HhhcC-C-------
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVS----------LLIYG-S------- 314 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~----------lL~~~-~------- 314 (464)
.=.-.+.|+..+..-++.++.+-..||.....++..+-.+..+.. ...||.|+. ||.+. +
T Consensus 251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 112356788888888899999999999999999988744444433 345566553 23310 0
Q ss_pred --------------------------------------hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCH
Q 012413 315 --------------------------------------SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGE 356 (464)
Q Consensus 315 --------------------------------------~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~ 356 (464)
-.+|+..+.+|.-|+.. .++.+... .+|.|-+.|.++.=
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~-l~PlLk~~L~~~~W 407 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPI-LLPLLKEHLSSEEW 407 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh--hHHHHHHH-HHHHHHHHcCcchh
Confidence 12444444444443330 01111111 34555555556555
Q ss_pred HHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--HHhHHHHHHcCChHHHHH
Q 012413 357 GMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES--VKNRGLLVREGGIPPLVA 432 (464)
Q Consensus 357 ~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~ 432 (464)
.+++.+.-+|+.+|..- -+.++. ...++-|+.+|.+..+-||...+|+|+..+..- ......+ ..++..|++
T Consensus 408 ~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~ 483 (885)
T KOG2023|consen 408 KVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLR 483 (885)
T ss_pred hhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHH
Confidence 67888889999888411 011111 136888999999999999999999998877531 1112222 235666777
Q ss_pred hhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 433 LSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 433 lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
.+-+++.+|+++|+.|...+-+.-
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhc
Confidence 777899999999999998876543
No 54
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.4e-06 Score=92.41 Aligned_cols=334 Identities=13% Similarity=0.096 Sum_probs=228.8
Q ss_pred CCcchhHHHHHHhhhhh--cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhc
Q 012413 93 STISEDDYLNVSQAFSD--FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESI 170 (464)
Q Consensus 93 ~~~~e~~~~~L~~ll~~--~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~ 170 (464)
.+.-+|.++-|+.=..+ ...=|++|+.+|+-++. .+...+..-| +++++..|+++..+++++.+
T Consensus 17 ~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~G-----------mk~li~vL~~D~~D~E~ik~- 82 (970)
T KOG0946|consen 17 QQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQG-----------MKPLIQVLQRDYMDPEIIKY- 82 (970)
T ss_pred cccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHcc-----------cHHHHHHHhhccCCHHHHHH-
Confidence 34466778888876665 44458889888887642 2332332222 45667777777766666552
Q ss_pred CCCCchHHHHHHHHhcCCCC-HHHHHHHH--HHHHHHhccCchhHH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012413 171 SPEDLQPTVKICIDGLQSSS-VAIKRSAA--AKLRLLAKNRSDNRV-LIGESGAVPALVPLLKCSDPWTQEHSVTALLNL 246 (464)
Q Consensus 171 ~~~~~~~~v~~Lv~~L~s~~-~~vr~~A~--~~L~~La~~~~~~r~-~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~L 246 (464)
++..|.-.+.+++ +.|....- .-++. ...+ .+...+.|..|+..++..|..||..+...|.++
T Consensus 83 -------~LdTl~il~~~dd~~~v~dds~qsdd~g~------~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsal 149 (970)
T KOG0946|consen 83 -------ALDTLLILTSHDDSPEVMDDSTQSDDLGL------WIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSAL 149 (970)
T ss_pred -------HHHHHHHHHhcCcchhhcccchhhhHHHH------HHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHH
Confidence 3333333344332 22221111 00100 0112 334578999999999999999999999999998
Q ss_pred cCC--CchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc-hhhhhccCChHHHHHHhhcC---Ch-hhH
Q 012413 247 SLH--ENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN-KSSIGACGAIPPLVSLLIYG---SS-RGK 318 (464)
Q Consensus 247 a~~--~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~-~~~i~~~g~i~~Li~lL~~~---~~-~v~ 318 (464)
-.+ .+.++.+.. .-+|..|+.+|.+..+.+|-.++..|..|..+... +..++-.+++..|+.++..+ +. -|.
T Consensus 150 ls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVv 229 (970)
T KOG0946|consen 150 LSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVV 229 (970)
T ss_pred HhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 764 466766654 77999999999999999999999999999988544 44444588999999999874 33 478
Q ss_pred HHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC---CHHH----------HHHHHHHHHHHhC--C-----HhhHH
Q 012413 319 KDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ---GEGM----------AEKAMVVLSLLAG--I-----AEGRE 377 (464)
Q Consensus 319 ~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~---~~~v----------~~~A~~aL~nLa~--~-----~~~~~ 377 (464)
..++..|-||-+ +..|+..|.+.+.+|.|..+|... +.++ .-.++.++..+.. + ..++.
T Consensus 230 eDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk 309 (970)
T KOG0946|consen 230 EDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQK 309 (970)
T ss_pred HHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999 567999999999999999888532 1111 2235556666653 2 24567
Q ss_pred HHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcC---------ChHHHHHhh-hcCC-HHHHHH
Q 012413 378 AIVEENGIAALVEAIEDG--SVKGKEFAVLTLLQLCAESVKNRGLLVREG---------GIPPLVALS-QTGS-VRAKHK 444 (464)
Q Consensus 378 ~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g---------~i~~Lv~lL-~s~~-~~v~~~ 444 (464)
.+...+++..|..++-++ ..+++..+..++.+....+..++..+.+-. .|-.|...+ .+.. ...|-.
T Consensus 310 ~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcA 389 (970)
T KOG0946|consen 310 ALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCA 389 (970)
T ss_pred HHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHH
Confidence 888899999999999876 578999999999999999999998887631 122222222 2233 366666
Q ss_pred HHHHHHHhh
Q 012413 445 AETLLGYLR 453 (464)
Q Consensus 445 A~~aL~~L~ 453 (464)
+...++.+-
T Consensus 390 v~ycf~s~l 398 (970)
T KOG0946|consen 390 VLYCFRSYL 398 (970)
T ss_pred HHHHHHHHH
Confidence 666665543
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=98.68 E-value=7.2e-06 Score=90.13 Aligned_cols=253 Identities=13% Similarity=0.068 Sum_probs=180.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH-HHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKL-RLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L-~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+-+..|.+.|.+.+...++.|++.+ ...+.+ .+. ..+.+-+++++.+++.++++.....|.+.+.. ++..-
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH
Confidence 3455556777787877777887755 444444 221 23566677888999999999999999999873 44322
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
. ++..|.+=++++++.+|..|+.+|+++-.. +..+ -.++.+.+.|.+.++.||+.|+-++.++-....
T Consensus 105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p- 172 (746)
T PTZ00429 105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-SVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM- 172 (746)
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-HHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence 2 566778888889999999999999987321 1111 135667788888999999999999999876332
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
+.+.+.|.++.|.++|.+.++.|..+|+.+|..+....... .-...+.+..|+..+.+-++..|...+.+|....-.+
T Consensus 173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~ 250 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD 250 (746)
T ss_pred -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Confidence 23345678889999999999999999999999998532221 1233556777888888888888888887775533222
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.... ...+..+...|++.++.|...|+.++-.+..+
T Consensus 251 ~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 251 KESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred cHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 1111 24577778888888899999998888877643
No 56
>PTZ00429 beta-adaptin; Provisional
Probab=98.67 E-value=4.4e-06 Score=91.82 Aligned_cols=264 Identities=13% Similarity=0.023 Sum_probs=189.5
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
++.......++.+.+.+..+|+-.--.|.+++..+++..- -++..+.+=+.+++|.+|..|+++|+++-..
T Consensus 65 DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~---- 135 (746)
T PTZ00429 65 DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS---- 135 (746)
T ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH----
Confidence 4456777778899999999999999999888887665422 2567788888899999999999999987532
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
.+.+ -.++.+.+.|.+.++.||..|+.++.++-.... +.+.+.|.++.|.++|.+.++.|..+|+.+|..+.....
T Consensus 136 -~i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 136 -SVLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred -HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 1111 256778889999999999999999999854322 334567888999999999999999999999999987433
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
.. .-...+.+..|+..|.+.++-.+...+.+|.... +..... ....+..+...|++.++.|...|+.++.++...
T Consensus 212 ~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 212 EK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred hh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 22 1123446677888887666555666666664422 211111 135677888888899999999999999999864
Q ss_pred C-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 414 S-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 414 ~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
. +.....+. .....+|+.+ .++++++|.-+...|..|....+
T Consensus 287 ~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 287 CSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred CCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH
Confidence 2 22222111 1223666766 45678899999888887776443
No 57
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6.5e-07 Score=95.58 Aligned_cols=211 Identities=16% Similarity=0.117 Sum_probs=164.7
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHhcC--CCchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhccc-ccchh
Q 012413 221 VPALVPLLKCS-DPWTQEHSVTALLNLSL--HENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALI-EENKS 295 (464)
Q Consensus 221 i~~Ll~lL~~~-~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~-~~~~~ 295 (464)
+..|++=|+.. |+..+..|+.=|+.+.. +++.-.-|--.-.+|.|+.+|+.+ +.++...||+||.+|+.. +....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45566656654 88888888888877643 344444444456899999999986 789999999999999987 78888
Q ss_pred hhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-
Q 012413 296 SIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI- 372 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~- 372 (464)
.+++.++||.|++-|.. .-..+.++++.+|..|++ ++. .+.++|++...+.+|.=-...+++.|+.+..|+|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999876654 677899999999999988 443 468899999999999766678899999999999953
Q ss_pred -HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---CHHhHHHHHHcCChHHHHHhhhc
Q 012413 373 -AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE---SVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 373 -~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
++.-..+. .++|.|..+|...+.+..+.++.|+..++.. .+..-+.+...|.|.....|+.-
T Consensus 326 ~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 326 RSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred CCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 33233333 4799999999999999999999999988753 45555566677777777776654
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.40 E-value=4.1e-06 Score=84.40 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=144.5
Q ss_pred HHHHhcCChHHHHHhhcCCCHH--HHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcc
Q 012413 213 VLIGESGAVPALVPLLKCSDPW--TQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLAL 289 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~~~~~--v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~ 289 (464)
..+...|+++.|+.++..++.+ ++..|+..|-.+. ..+|+..++..| +..++.+-+. +..++....+..|.+|-+
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 4566789999999999997755 5889999987765 457788888876 4444444443 567899999999999999
Q ss_pred cc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc--chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 012413 290 IE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK--QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL 366 (464)
Q Consensus 290 ~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~--~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL 366 (464)
|+ +..+.+++.|++..++-.++..++.+.+.++-+|+|.+.+. +.+.+|++..+.+.|.-+-.+.+.-.+.+|+.+.
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 95 67889999999999999999999999999999999999854 6888999999999999998888888899999999
Q ss_pred HHHhCCHhhHHHHHhcCcHH
Q 012413 367 SLLAGIAEGREAIVEENGIA 386 (464)
Q Consensus 367 ~nLa~~~~~~~~i~~~g~i~ 386 (464)
+.|+.+.+.-..+...|.+.
T Consensus 332 ~vlat~KE~E~~VrkS~Tla 351 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLA 351 (832)
T ss_pred hhhhhhhhhhHHHhhccchh
Confidence 99999888877777777443
No 59
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.39 E-value=2.5e-06 Score=72.62 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=121.5
Q ss_pred cCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHH
Q 012413 259 AGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKER 337 (464)
Q Consensus 259 ~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 337 (464)
-+.+..|+.-.+. .+.+.+++...-|.|.+.++-+-..+.+..++...++.|..++..++..+.+.|+|+|..+.+...
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3456667766554 588999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 012413 338 AVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTL 407 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 407 (464)
|++++++|..+..+.++...+.-.|+..+..|+ .....+..+....++..+.+.-.+.+.+.+..|-..|
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl 165 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFL 165 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999 4455677777655555544444344444444444333
No 60
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=4.2e-05 Score=78.94 Aligned_cols=338 Identities=16% Similarity=0.111 Sum_probs=226.1
Q ss_pred cchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhh---cccCc-----hh-
Q 012413 95 ISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFL---QRENF-----ST- 164 (464)
Q Consensus 95 ~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L---~~~~~-----s~- 164 (464)
--+.-++|...-|+| +..+|-.|.+.+=.++....+. .++.+..+...+ ..+.+ ..
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~--------------v~~~Fn~iFdvL~klsaDsd~~V~~~ae 146 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE--------------VLVYFNEIFDVLCKLSADSDQNVRGGAE 146 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC--------------cccchHHHHHHHHHHhcCCccccccHHH
Confidence 357788999999999 9999999999988775432221 222222222222 11110 11
Q ss_pred ---hHhhhcC-----CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH-hcCChHHHHHhhcCCCHHH
Q 012413 165 ---EIIESIS-----PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG-ESGAVPALVPLLKCSDPWT 235 (464)
Q Consensus 165 ---~i~~~~~-----~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~-~~g~i~~Ll~lL~~~~~~v 235 (464)
..+..++ .-.+...|+.|-..+...++..|..-+..|.-+-...+. +.+. -....+.|..+|.++.+++
T Consensus 147 LLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~--~m~~yl~~~ldGLf~~LsD~s~eV 224 (675)
T KOG0212|consen 147 LLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL--EMISYLPSLLDGLFNMLSDSSDEV 224 (675)
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH--HHHhcchHHHHHHHHHhcCCcHHH
Confidence 1111111 234567788888888888999999999888777554322 2221 1356777889999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCC
Q 012413 236 QEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGS 314 (464)
Q Consensus 236 ~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~ 314 (464)
+..+-.+|.++-..-.++...++ ...++.++.-++++++.++..|+..|.....-....-...-.|.+..++.++.+..
T Consensus 225 r~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 225 RTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred HHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc
Confidence 98877777665332111111112 45789999999999999999998888887655444444445677778888887765
Q ss_pred hh-hHHHHHH---HHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHH
Q 012413 315 SR-GKKDALT---TLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALV 389 (464)
Q Consensus 315 ~~-v~~~A~~---aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv 389 (464)
+. ++..+.. .|..++..+...+. ++ ...+..|...+.++..+.+..++..+..|-....++-..........|+
T Consensus 305 ~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL 383 (675)
T KOG0212|consen 305 EMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLL 383 (675)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHH
Confidence 53 4433332 34444444433333 33 3366888889999889999999999998887777777777788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 390 ~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.-|.+.++.+...+...+.++|.....- .. -..+..|+++...+..-++.++.-+++.++
T Consensus 384 ~tLsd~sd~vvl~~L~lla~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 384 KTLSDRSDEVVLLALSLLASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred HhhcCchhHHHHHHHHHHHHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 9999999999999999999999764321 00 112444555555566677777777777765
No 61
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=5e-05 Score=73.81 Aligned_cols=277 Identities=14% Similarity=0.150 Sum_probs=196.5
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH----HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR----VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r----~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~ 251 (464)
+...+.|-..|..++..|+.-++..++.+..+.+.+. ..+++.|..+.++.++-.++.++-..|...|..++.-++
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 4566677778888999999999999999988877442 345578999999999999999999999999999999888
Q ss_pred hHHHHHhcCcHHHH--HHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHH
Q 012413 252 NKTLITNAGAIKSL--VYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYK 327 (464)
Q Consensus 252 ~~~~i~~~g~i~~L--v~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~n 327 (464)
.-..+.+......+ ..+-...+.-+|......+..+... ++.....-..|.+..|..=|+- .+.-|+.++......
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 88888877766543 3344445666777888888777665 4555566667877777666655 688899999999999
Q ss_pred HhcCcchHHHHHHcCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhC----CHhhHHHHHh--cCcHHHHHHHHhcCCHHH
Q 012413 328 LCSLKQNKERAVSAGAVRPLVGMLAGQG--EGMAEKAMVVLSLLAG----IAEGREAIVE--ENGIAALVEAIEDGSVKG 399 (464)
Q Consensus 328 L~~~~~~~~~iv~~g~v~~Lv~lL~~~~--~~v~~~A~~aL~nLa~----~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v 399 (464)
|+.....++.+.++|.++.+..++...+ +.-...++...+.+-+ .+..-+.+.+ --.|..-.+++...+++.
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 9998888888899999999999996443 4445545554444332 2222233333 124666778888899999
Q ss_pred HHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhh---hcCC-HHHHHHHHHHHHHhhc
Q 012413 400 KEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALS---QTGS-VRAKHKAETLLGYLRE 454 (464)
Q Consensus 400 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL---~s~~-~~v~~~A~~aL~~L~~ 454 (464)
+..|+.+++.|++..+ .++.+...| -|..-.++ .+.+ ..-+..+..+|.+|+.
T Consensus 321 ieaAiDalGilGSnte-GadlllkTg-ppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTE-GADLLLKTG-PPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHhccCCcc-hhHHHhccC-ChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 9999999999997654 344444433 33333333 2222 2334445555555543
No 62
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.33 E-value=4e-06 Score=71.39 Aligned_cols=154 Identities=16% Similarity=0.056 Sum_probs=129.0
Q ss_pred cCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHH
Q 012413 300 CGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREA 378 (464)
Q Consensus 300 ~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 378 (464)
.+.+..|+.=... .+.+.+.....=|+|.+-++-|-..+.+..+++..+..|...+..+.+.+++.|+|+|-.+.+.+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3445566655554 488899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 379 IVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
|.++++++.++..+.++...+...|+.++..|+......+..+..-.++..+.+.-.+.+.+.+--|...|....
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999877777777766555666655555556666767776666543
No 63
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00018 Score=69.51 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=161.0
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...++.+.+++....+ -..|+.+|.|++++ +..++.+.+. .+..++..+.++....-...|.+|.|+++.++....
T Consensus 43 ~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ 118 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAA 118 (353)
T ss_pred hhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHH
Confidence 4567777778877666 66899999999998 7777777766 888888888888777888999999999998755443
Q ss_pred HHh-------cCcHHHHHHHHccCCH--HHHHHHHHHHHHhcccccchhhhhccCChH--HHHHHhhcCChhhHH-HHHH
Q 012413 256 ITN-------AGAIKSLVYVLKTGTE--TSKQNAACALMSLALIEENKSSIGACGAIP--PLVSLLIYGSSRGKK-DALT 323 (464)
Q Consensus 256 i~~-------~g~i~~Lv~lL~~~~~--~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~--~Li~lL~~~~~~v~~-~A~~ 323 (464)
+.. .|.+.........+-. .--.+.+-.+.||+..+.+|..+.+...+| .|+.+ .+++..+|+ -.++
T Consensus 119 ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~Gvag 197 (353)
T KOG2973|consen 119 LLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAG 197 (353)
T ss_pred HHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHH
Confidence 321 3344444444443322 233567888899999988888887765433 22222 335556665 5788
Q ss_pred HHHHHhcCcchHHHHHHc--CCHHHHH---------------------Hhhc-----CCCHHHHHHHHHHHHHHhCCHhh
Q 012413 324 TLYKLCSLKQNKERAVSA--GAVRPLV---------------------GMLA-----GQGEGMAEKAMVVLSLLAGIAEG 375 (464)
Q Consensus 324 aL~nL~~~~~~~~~iv~~--g~v~~Lv---------------------~lL~-----~~~~~v~~~A~~aL~nLa~~~~~ 375 (464)
+|.|.|-...+...+.+. ..+|.++ ++|- +++++++..-+.+|.-||....+
T Consensus 198 tlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G 277 (353)
T KOG2973|consen 198 TLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG 277 (353)
T ss_pred HHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh
Confidence 999998887777776652 1223322 2221 24567899999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhc
Q 012413 376 REAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~ 413 (464)
|+.+.+.|+-+.+-++=+ .++++++..+-...-.|...
T Consensus 278 Re~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 278 REVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred HHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 999999887765555544 35677777666666666543
No 64
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=4.7e-06 Score=85.30 Aligned_cols=260 Identities=14% Similarity=0.089 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccC
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTG 272 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~ 272 (464)
-.+++.+|..+++.-...|..+.+...+++|+++|.+++..+.-.+...++|..-. ...+..+.+.|.|..|+.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34567778888888788888899999999999999998888888999999998775 67788899999999999999999
Q ss_pred CHHHHHHHHHHHHHhccccc--chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc-c---hHHHHHHc---C-
Q 012413 273 TETSKQNAACALMSLALIEE--NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK-Q---NKERAVSA---G- 342 (464)
Q Consensus 273 ~~~v~~~a~~aL~~Ls~~~~--~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~-~---~~~~iv~~---g- 342 (464)
|..+|.+..|+|.++..+.+ .+-.....-++..++++..++.-.++.+.+.+|.|++-+. . .++.++.. .
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 99999999999999988743 3445566677999999999999999999999999997732 2 22222211 1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhh-HHHHHh-cCcHHHHHHHHh----c----------------------
Q 012413 343 AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEG-REAIVE-ENGIAALVEAIE----D---------------------- 394 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~-~g~i~~Lv~lL~----~---------------------- 394 (464)
....|++.+...++-.....+..|.+++..++. +..+.+ ...+..+-+.|. .
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 345566666666665566667777777743332 223332 222222222211 1
Q ss_pred ---------------------------CCHHHHHHHHHHHHHHhhc---------CHHhHHHHHHcCChHHHHHhhhcCC
Q 012413 395 ---------------------------GSVKGKEFAVLTLLQLCAE---------SVKNRGLLVREGGIPPLVALSQTGS 438 (464)
Q Consensus 395 ---------------------------~~~~v~~~A~~aL~~L~~~---------~~~~~~~i~~~g~i~~Lv~lL~s~~ 438 (464)
.++++-....|.+.|+... ..+....+.+.|.-+.|+.+..+++
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 1122444556666665432 1123345556676677777777778
Q ss_pred HHHHHHHHHHHHHhh
Q 012413 439 VRAKHKAETLLGYLR 453 (464)
Q Consensus 439 ~~v~~~A~~aL~~L~ 453 (464)
+.||+++..||.++.
T Consensus 726 l~vrek~~taL~~l~ 740 (743)
T COG5369 726 LIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHHhhh
Confidence 899999999998874
No 65
>PF05536 Neurochondrin: Neurochondrin
Probab=98.30 E-value=5.4e-05 Score=80.96 Aligned_cols=234 Identities=15% Similarity=0.113 Sum_probs=165.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchh---HHHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDN---RVLIGESGAVPALVPLLKC-------SDPWTQEHSVTALLN 245 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~---r~~i~~~g~i~~Ll~lL~~-------~~~~v~~~A~~aL~~ 245 (464)
.+.++.|+..|+..+..-|..++..+..+..+.+.. ++.+.+.=+.+.|-.+|+. +....+.-|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 467889999999988778888999999998887643 3457777778889999987 345778899999999
Q ss_pred hcCCCchHHHHHhcCcHHHHHHHHccCCH-HHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 246 LSLHENNKTLITNAGAIKSLVYVLKTGTE-TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 246 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
++..++....-.-.+-||.|+..+...+. .+...+..+|..++.+++++..+.+.|+++.|.+.+.+ .+.....|+.+
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 99977654322223479999999988877 99999999999999999999999999999999999988 66778899999
Q ss_pred HHHHhcCcchH-----HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhh--HHHHHhc----CcHHHHHHHHh
Q 012413 325 LYKLCSLKQNK-----ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEG--REAIVEE----NGIAALVEAIE 393 (464)
Q Consensus 325 L~nL~~~~~~~-----~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~i~~~----g~i~~Lv~lL~ 393 (464)
|.+++...... ...+ ...++.+-..+...+...+...+..|..+-...+. ....... .....+..+++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 99987743211 1111 12445555555555555677777777777643321 1111112 23344445555
Q ss_pred cC-CHHHHHHHHHHHHHHh
Q 012413 394 DG-SVKGKEFAVLTLLQLC 411 (464)
Q Consensus 394 ~~-~~~v~~~A~~aL~~L~ 411 (464)
+. .+.-|..|......|.
T Consensus 242 sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLL 260 (543)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 43 4555555555555554
No 66
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.29 E-value=0.00027 Score=72.06 Aligned_cols=272 Identities=17% Similarity=0.162 Sum_probs=190.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
..+.+...+-+++.+||..|.++++.+..+ +..-+.+.+.+.--.++..|.. .+..=|+.|...+..+...+++.+.
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence 334444344455599999999999999988 4445566676665556666655 3344578888888777654332222
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.-.|.+..++.+..+.+..++..+..+|+.|+... -+.+..+||+..|++.+.++...+....+.++..+..++..+
T Consensus 105 -~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 105 -IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred -CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 24578899999999999999999999999998752 235678999999999999877678889999999999999888
Q ss_pred HHHHHcCCHHHHHHhhcCC-------CH--HHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhcCCHHHHHHHH
Q 012413 336 ERAVSAGAVRPLVGMLAGQ-------GE--GMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIEDGSVKGKEFAV 404 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~-------~~--~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~ 404 (464)
..+...--+..++.-+.+. +. +-...+..++..+-.+=.+--.+.. ..++..|+..|..+.+++|....
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 8776544456666655443 12 2334445555555432222222222 24788888888888888888777
Q ss_pred HHHHHHhhc------------------CHH----------------------h------------HHHHHHcCChHHHHH
Q 012413 405 LTLLQLCAE------------------SVK----------------------N------------RGLLVREGGIPPLVA 432 (464)
Q Consensus 405 ~aL~~L~~~------------------~~~----------------------~------------~~~i~~~g~i~~Lv~ 432 (464)
..+..+-.- +.. . -..+.++|.++.|++
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 777666430 000 0 235778999999999
Q ss_pred hhhcC-CHHHHHHHHHHHHHhh
Q 012413 433 LSQTG-SVRAKHKAETLLGYLR 453 (464)
Q Consensus 433 lL~s~-~~~v~~~A~~aL~~L~ 453 (464)
+..+. ++.+..+|.-.|+.+-
T Consensus 342 li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHHH
Confidence 99997 8899999999988763
No 67
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=5.9e-05 Score=80.31 Aligned_cols=272 Identities=15% Similarity=0.165 Sum_probs=183.4
Q ss_pred CCchHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 012413 173 EDLQPTVKICIDGLQSSSV-AIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPLLKC--SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~-~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~ 248 (464)
+-|+..++.|+.....+.+ .+|..++.+|+.++.+-..- ..... ..++-.++.=.+. ++..+|..|..+|.|--.
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 4567788888877776554 49999999999999884332 22222 3445555554443 677899999999987421
Q ss_pred -------CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHH
Q 012413 249 -------HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKD 320 (464)
Q Consensus 249 -------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~ 320 (464)
++..|.. .+...++.-++++.+++..|..+|..|..- -+.-........++.-+.-+++++.+|...
T Consensus 204 f~~~nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQ 278 (859)
T KOG1241|consen 204 FTKANFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQ 278 (859)
T ss_pred HHHHhhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 1122222 344556677788999999999999987653 233333333334555667778899999999
Q ss_pred HHHHHHHHhcCcch-H---HHHHH---------------cCCHHHHHHhhcCCC----HH---HHHHHHHHHHHHhCCHh
Q 012413 321 ALTTLYKLCSLKQN-K---ERAVS---------------AGAVRPLVGMLAGQG----EG---MAEKAMVVLSLLAGIAE 374 (464)
Q Consensus 321 A~~aL~nL~~~~~~-~---~~iv~---------------~g~v~~Lv~lL~~~~----~~---v~~~A~~aL~nLa~~~~ 374 (464)
+...=.++|..+-. . ...++ .+++|.|+++|...+ .+ ....|..||.-++.
T Consensus 279 aiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~--- 355 (859)
T KOG1241|consen 279 AIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ--- 355 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---
Confidence 99887777763211 0 11111 357788999885321 22 24445555554442
Q ss_pred hHHHHHhcCcHHHHHHHH----hcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 375 GREAIVEENGIAALVEAI----EDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL----~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
......++..+.++ ++++-+-+..|+.+++.+-......+..=...++++.++.++.++.-.++..++|.|+
T Consensus 356 ----~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlg 431 (859)
T KOG1241|consen 356 ----CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLG 431 (859)
T ss_pred ----HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHH
Confidence 12234455555554 4678888999999999999876666666566788999999999888899999999999
Q ss_pred HhhcCCC
Q 012413 451 YLREPRQ 457 (464)
Q Consensus 451 ~L~~~~~ 457 (464)
.+++.-+
T Consensus 432 rI~d~l~ 438 (859)
T KOG1241|consen 432 RIADFLP 438 (859)
T ss_pred HHHhhch
Confidence 9998765
No 68
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=3.4e-05 Score=79.63 Aligned_cols=304 Identities=15% Similarity=0.107 Sum_probs=196.1
Q ss_pred CCcchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCc-ccCcccccCCCchhhhhhhcccCchhhHhhhc
Q 012413 93 STISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPN-ENNCQAELEPEPEPCLGFLQRENFSTEIIESI 170 (464)
Q Consensus 93 ~~~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~-~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~ 170 (464)
-+.-++.++-|+++..| +..|| +.++-+.|+.+ +.+.+.. .-+..+ .+|++..-+. .-+ ...+.++
T Consensus 120 ~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLik-----dIVte~~~tFsL~~-~ipLL~eriy---~~n--~~tR~fl 187 (675)
T KOG0212|consen 120 LVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIK-----DIVTESASTFSLPE-FIPLLRERIY---VIN--PMTRQFL 187 (675)
T ss_pred ccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHH-----HhccccccccCHHH-HHHHHHHHHh---cCC--chHHHHH
Confidence 34467889999999999 55554 55666666521 1111100 111111 3343322111 111 1111111
Q ss_pred C----------C----CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHH-HhcCChHHHHHhhcCCCHHH
Q 012413 171 S----------P----EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLI-GESGAVPALVPLLKCSDPWT 235 (464)
Q Consensus 171 ~----------~----~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i-~~~g~i~~Ll~lL~~~~~~v 235 (464)
. + +.+...++-|...|++++++||..+=.+|.++-.+= ...... --...++.++.-+.++++.+
T Consensus 188 v~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~ss~~~i 266 (675)
T KOG0212|consen 188 VSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQSSEPEI 266 (675)
T ss_pred HHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccCCcHHH
Confidence 0 0 345667888899999999999977766555443220 010111 12467889999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHH-HHHHHHH---HHHHhcccccchhhhhccC-ChHHHHHHh
Q 012413 236 QEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTET-SKQNAAC---ALMSLALIEENKSSIGACG-AIPPLVSLL 310 (464)
Q Consensus 236 ~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-v~~~a~~---aL~~Ls~~~~~~~~i~~~g-~i~~Li~lL 310 (464)
+..|..-|..+..-+...-...-.|.+..+++++.+..+. .+..+.. -|..+...+..++. ++.| .+..|.+.+
T Consensus 267 q~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l 345 (675)
T KOG0212|consen 267 QLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYL 345 (675)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHh
Confidence 9999998888876544434444577778888888776653 3333322 33444443333333 4443 457777888
Q ss_pred hcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHH
Q 012413 311 IYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVE 390 (464)
Q Consensus 311 ~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~ 390 (464)
.++..+.|..++.-+..|-....++-.......++.|+.-|.+.+..+...++..++++|..+..... -..+..|++
T Consensus 346 ~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~ 422 (675)
T KOG0212|consen 346 SDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLE 422 (675)
T ss_pred hcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHH
Confidence 88899999999998888877666665555677899999999999999999999999999976544311 224556777
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhc
Q 012413 391 AIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 391 lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
+.+++..-+...+..++++||.-
T Consensus 423 ~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 423 MFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHhhhhHHHHhhhhHHHHHHHHH
Confidence 77777788888999999999863
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.23 E-value=4.5e-06 Score=66.64 Aligned_cols=86 Identities=33% Similarity=0.403 Sum_probs=71.9
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc
Q 012413 221 VPALVPLL-KCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA 299 (464)
Q Consensus 221 i~~Ll~lL-~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~ 299 (464)
||.|++.| +++++.+|..|+.+|+.+. ...+++.|+.+++++++.+|..|+++|..+ .+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67899988 8899999999999998542 224799999999999999999999999997 34
Q ss_pred cCChHHHHHHhhcC-ChhhHHHHHHHHH
Q 012413 300 CGAIPPLVSLLIYG-SSRGKKDALTTLY 326 (464)
Q Consensus 300 ~g~i~~Li~lL~~~-~~~v~~~A~~aL~ 326 (464)
..+++.|.+++.++ +..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 55899999999886 4556888888875
No 70
>PF05536 Neurochondrin: Neurochondrin
Probab=98.22 E-value=0.0001 Score=78.88 Aligned_cols=234 Identities=19% Similarity=0.103 Sum_probs=169.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc----hHHHHHhcCcHHHHHHHHcc-------CCHHHHHHHHHHHHHhc
Q 012413 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLHEN----NKTLITNAGAIKSLVYVLKT-------GTETSKQNAACALMSLA 288 (464)
Q Consensus 220 ~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~----~~~~i~~~g~i~~Lv~lL~~-------~~~~v~~~a~~aL~~Ls 288 (464)
.++..+.+|+..+.+=|-.++..+.++..+.+ .++.+.++=+.+.|-++|++ +....+.-|+..|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45667888998886667777777888887543 24467888889999999998 34678889999999999
Q ss_pred ccccchhhhhccCChHHHHHHhhcCCh-hhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 289 LIEENKSSIGACGAIPPLVSLLIYGSS-RGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLS 367 (464)
Q Consensus 289 ~~~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~ 367 (464)
..++.+..-.-.+-||.|++.+.+.+. .+...+..+|..++.++++++.+++.|+++.|++.+.. ++...+.|+.+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 887665443335679999999998877 99999999999999999999999999999999999987 5566888999999
Q ss_pred HHhCCHhhHHHHHh-----cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh-----HHHHHHcCChHHHHHhhhcC
Q 012413 368 LLAGIAEGREAIVE-----ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN-----RGLLVREGGIPPLVALSQTG 437 (464)
Q Consensus 368 nLa~~~~~~~~i~~-----~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~-----~~~i~~~g~i~~Lv~lL~s~ 437 (464)
+++...... ...+ ...+..+-..+.......+-..+..|..+-...+.. ...-+-..+...|..++++.
T Consensus 165 ~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 165 NLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 987432211 1111 134555556665556667777888888887665311 11122233445556666664
Q ss_pred -CHHHHHHHHHHHHHhhcC
Q 012413 438 -SVRAKHKAETLLGYLREP 455 (464)
Q Consensus 438 -~~~v~~~A~~aL~~L~~~ 455 (464)
.+.-|..|..+...+.+.
T Consensus 244 ~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 244 LTPSQRDPALNLAASLLDL 262 (543)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 567777777777666654
No 71
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.20 E-value=5.1e-05 Score=71.81 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=37.4
Q ss_pred CcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 383 NGIAALVEAIED--GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 383 g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
-.|+.|.+.|.+ +.+-+|..|+.+|+.++.. ..++.|.+.+.++.+-|++.+.-+|.++-
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 356666666653 3566666777777666632 24666666666666666666666666543
No 72
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.15 E-value=0.00098 Score=67.07 Aligned_cols=235 Identities=15% Similarity=0.080 Sum_probs=177.9
Q ss_pred CChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHh-------cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc
Q 012413 219 GAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITN-------AGAIKSLVYVLKTGTETSKQNAACALMSLALI 290 (464)
Q Consensus 219 g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~ 290 (464)
..+..++.++++ ..++....++..+..+-.....+..+.. .-.-+..+.+|...+.-+...+.+.+..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 457788888887 6677888888888888766555544331 22467889999999999998899999998765
Q ss_pred ccchhhhhccC-ChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcC--CCHHHHHHHHHHH
Q 012413 291 EENKSSIGACG-AIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG--QGEGMAEKAMVVL 366 (464)
Q Consensus 291 ~~~~~~i~~~g-~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~--~~~~v~~~A~~aL 366 (464)
...+....+.. ....|-..+.+ .+......|+++|..+...++.|-.++.+.++..++..+.+ .+..++.+.+-++
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 33222111111 13344555655 57788889999999999999999999999999999999942 3467799999999
Q ss_pred HHHhCCHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCH------HhHHHHHHcCChHHHHHhhhc--C
Q 012413 367 SLLAGIAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCAESV------KNRGLLVREGGIPPLVALSQT--G 437 (464)
Q Consensus 367 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~------~~~~~i~~~g~i~~Lv~lL~s--~ 437 (464)
.-|+-++...+.+..-+.|+.|.+++++ ..++|-+-++.++.|++...+ .....++..++.+.+-.+.+. +
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkys 304 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYS 304 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCC
Confidence 9999999988888788999999999996 578899999999999998764 445667888877777777665 4
Q ss_pred CHHHHHHHHHHHHHhh
Q 012413 438 SVRAKHKAETLLGYLR 453 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~ 453 (464)
++++...-..+-..|.
T Consensus 305 DEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 305 DEDLVDDIEFLTEKLK 320 (442)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6777665554444443
No 73
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.14 E-value=0.00029 Score=71.79 Aligned_cols=253 Identities=15% Similarity=0.075 Sum_probs=179.9
Q ss_pred HHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccC--CHHHH
Q 012413 200 KLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTG--TETSK 277 (464)
Q Consensus 200 ~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~ 277 (464)
.|..+-+..+..+..+.-....+.+..++=+++.+++..+.+++..+..+++.-+.+.+.+.--.++..|..+ +..=|
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 3444445556555555544555566655555559999999999999999998888888888777777777664 45678
Q ss_pred HHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHH
Q 012413 278 QNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEG 357 (464)
Q Consensus 278 ~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~ 357 (464)
++|...+..+....++... ...|.+..++.+..+.+...+..++.+|+.|+..++ +.+...||+..|+..+.++...
T Consensus 86 ~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHh
Confidence 8999988887655433222 356778999999999999999999999999988432 2457899999999999886666
Q ss_pred HHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC-------CH--HHHHHHHHHHHHHhhcCHHhHHHH-HHcCCh
Q 012413 358 MAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG-------SV--KGKEFAVLTLLQLCAESVKNRGLL-VREGGI 427 (464)
Q Consensus 358 v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~--~v~~~A~~aL~~L~~~~~~~~~~i-~~~g~i 427 (464)
+.+..+.++..+-.++..|+.+...--++.++..+.+. +. +.-..+..++..+-..=+.--... -+..++
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l 242 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL 242 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence 88888999999999999999887744455555555433 12 234455555555543211000000 112578
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 428 PPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 428 ~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
..|+..|+.+++++|+.....+-.+-+-
T Consensus 243 ksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 243 KSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 8999999999999999988888776553
No 74
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00081 Score=67.90 Aligned_cols=236 Identities=19% Similarity=0.144 Sum_probs=180.5
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC------Cch----HHHHHhcCcHHHHHH
Q 012413 198 AAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH------ENN----KTLITNAGAIKSLVY 267 (464)
Q Consensus 198 ~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~------~~~----~~~i~~~g~i~~Lv~ 267 (464)
++-+..+|.- |..-..+++.++|+.|+.+|.+++.++....+..|..|+.. .++ ...+++.+.++.|++
T Consensus 105 IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 105 IQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 3344444444 66667888999999999999999999999999999999752 122 245677889999999
Q ss_pred HHccCCHHHH------HHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhcC-cchHHH
Q 012413 268 VLKTGTETSK------QNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCSL-KQNKER 337 (464)
Q Consensus 268 lL~~~~~~v~------~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~~-~~~~~~ 337 (464)
-+..-++.++ .++...+-|+... ++....+++.|.+..|+..+... -..-+..|..+|.-+..+ ++++..
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~ 263 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKL 263 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhh
Confidence 8877555544 4556667777655 56778888888888888865543 456778889999988885 458777
Q ss_pred HHHcCCHHHHHHhhc---CC------CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 338 AVSAGAVRPLVGMLA---GQ------GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~---~~------~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
+..-.|+..|+.-+. .. ..+.-++...+|+.+-..+.++..++...|++...-+++. ....+..|..+|-
T Consensus 264 ~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd 342 (536)
T KOG2734|consen 264 LGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLD 342 (536)
T ss_pred hcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHH
Confidence 778889999888773 12 2345677888888888899999999998888866666665 6667888999998
Q ss_pred HHhhcCH--HhHHHHHHcCChHHHHHhhh
Q 012413 409 QLCAESV--KNRGLLVREGGIPPLVALSQ 435 (464)
Q Consensus 409 ~L~~~~~--~~~~~i~~~g~i~~Lv~lL~ 435 (464)
.+....+ .++..+++.+|+..+..+..
T Consensus 343 ~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 343 HAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 8887655 78999999999988888765
No 75
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.13 E-value=8.3e-05 Score=78.86 Aligned_cols=341 Identities=14% Similarity=0.068 Sum_probs=205.9
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCC-chhhhhhhcccCchhh--------
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPE-PEPCLGFLQRENFSTE-------- 165 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~-l~~lv~~L~~~~~s~~-------- 165 (464)
+.+.+..+..-|.| .+.+|+-.++.+.++-+...- . +++|.++.. ++-++..++.....+.
T Consensus 714 ~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~-------~--diderleE~lidgil~Afqeqtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 714 SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGA-------A--DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGT 784 (1172)
T ss_pred chHHHHHHhhhhccccHHHHHHHHHHHHHHHhcccc-------c--cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHH
Confidence 33444444444444 777888888887776433221 1 111222222 2222334444332111
Q ss_pred Hhhhc---CCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH--HHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 012413 166 IIESI---SPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR--VLIGESGAVPALVPLLKCSDPWTQEHSV 240 (464)
Q Consensus 166 i~~~~---~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r--~~i~~~g~i~~Ll~lL~~~~~~v~~~A~ 240 (464)
+...+ ....+...+..++..|++.++.+|..|+..+..++.--..+. +.+...|. .|..-|..+.|++.-..+
T Consensus 785 V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsIL 862 (1172)
T KOG0213|consen 785 VVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSIL 862 (1172)
T ss_pred HHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHH
Confidence 11111 123445677777889999999999999999988874311111 12222333 366778889999988877
Q ss_pred HHHHHhcCCCchHHHH-HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhH
Q 012413 241 TALLNLSLHENNKTLI-TNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGK 318 (464)
Q Consensus 241 ~aL~~La~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~ 318 (464)
.||+.+...-...+.. --.+.+|.|...|++..+.++.++...++.++.. ++....=-....-=.|+++|+..+..+|
T Consensus 863 gAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iR 942 (1172)
T KOG0213|consen 863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIR 942 (1172)
T ss_pred HHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777775421111100 1257899999999999999999999999999876 3321111112333468899999999999
Q ss_pred HHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHH
Q 012413 319 KDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVK 398 (464)
Q Consensus 319 ~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 398 (464)
++|...++.+++.-. -..++..|++-|+..+...+.-..-+++-.+.. ..-..++|+|+.--..++..
T Consensus 943 Raa~nTfG~IakaIG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~------c~pFtVLPalmneYrtPe~n 1010 (1172)
T KOG0213|consen 943 RAAVNTFGYIAKAIG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAET------CGPFTVLPALMNEYRTPEAN 1010 (1172)
T ss_pred HHHHhhhhHHHHhcC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh------cCchhhhHHHHhhccCchhH
Confidence 999999998876211 122445555555544333333223333322210 00123566666666667888
Q ss_pred HHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCCC
Q 012413 399 GKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPS 461 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~~ 461 (464)
||.-.+.+|+.+...- +..++.+ .-+.|.|-+.|.+.+.--|.-|+.++++++=...+..|
T Consensus 1011 VQnGVLkalsf~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~ 1072 (1172)
T KOG0213|consen 1011 VQNGVLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGC 1072 (1172)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCc
Confidence 8888888887776431 2223333 23578888888889999999999999999876665544
No 76
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00024 Score=69.10 Aligned_cols=239 Identities=15% Similarity=0.134 Sum_probs=179.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc-----hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchh
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHEN-----NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKS 295 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~ 295 (464)
.|.|-.=|..++..++.-++..++.+..+.+ ....++.+|..+.++..+..++.++...|...|..++..+..-.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 3444444566888899999999999877644 12355689999999999999999999999999999999988888
Q ss_pred hhhccCChHHH--HHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhC
Q 012413 296 SIGACGAIPPL--VSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 296 ~i~~~g~i~~L--i~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~ 371 (464)
.+.+......+ ..+-...+.-+|-.....+..+.. +++.....-..|.+..|..-|+. .+.-++..++.....|+.
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 78776655543 444455667778888888888877 66666666778888888888876 566678899999999999
Q ss_pred CHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcCHHh---HHHHHHc--CChHHHHHhhhcCCHHHHHH
Q 012413 372 IAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQLCAESVKN---RGLLVRE--GGIPPLVALSQTGSVRAKHK 444 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~~~~---~~~i~~~--g~i~~Lv~lL~s~~~~v~~~ 444 (464)
..-+++.+.++|.|..+...+.. .++--+-.++...+.+....... -..+.+. -.++.-++.+..++++....
T Consensus 244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaiea 323 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEA 323 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHH
Confidence 88999999999999999999984 45666666776666655421100 0111111 23555567778889999999
Q ss_pred HHHHHHHhhcCCCCC
Q 012413 445 AETLLGYLREPRQEG 459 (464)
Q Consensus 445 A~~aL~~L~~~~~~~ 459 (464)
|..+|+.+...-.+.
T Consensus 324 AiDalGilGSnteGa 338 (524)
T KOG4413|consen 324 AIDALGILGSNTEGA 338 (524)
T ss_pred HHHHHHhccCCcchh
Confidence 999999998765543
No 77
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.09 E-value=6.2e-06 Score=56.21 Aligned_cols=41 Identities=37% Similarity=0.554 Sum_probs=38.2
Q ss_pred CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 414 SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 414 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
+++++..+++.|++++|+.+|+++++++++.|+|+|++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999974
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.00021 Score=74.95 Aligned_cols=264 Identities=16% Similarity=0.131 Sum_probs=172.8
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCch
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN 252 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~ 252 (464)
-++.+.++.++....+..+.||..|..+...+...-+.... .-.+|.++.-+.......+..++..|+.++...+-
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~ 287 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK 287 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH
Confidence 45567888888888899999999998888666543111100 12244444444445667889999999999887766
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.-.......||.|.+.|.+..+++|..+..+|..++...++.. | .-.+|.|++.+.++...+... ...|+.=+-..
T Consensus 288 qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I--~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~ 363 (569)
T KOG1242|consen 288 QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I--QKIIPTLLDALADPSCYTPEC-LDSLGATTFVA 363 (569)
T ss_pred HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H--HHHHHHHHHHhcCcccchHHH-HHhhcceeeee
Confidence 6677778899999999999999999999999999987655543 1 124677888887765443332 22222111100
Q ss_pred chHHHHHHcC----CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHH
Q 012413 333 QNKERAVSAG----AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIEDGSVKGKEFAVLT 406 (464)
Q Consensus 333 ~~~~~iv~~g----~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~a 406 (464)
.|++- .+|.|..-+...+....+.++.++.|||.--+....+.. ...++.|-..+.+..|++|..++++
T Consensus 364 -----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarA 438 (569)
T KOG1242|consen 364 -----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARA 438 (569)
T ss_pred -----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHH
Confidence 12222 345566666677788899999999999954332333322 3456677777777889999999999
Q ss_pred HHHHhhcCHHhHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhh
Q 012413 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLR 453 (464)
Q Consensus 407 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~ 453 (464)
|+.+-..-. ...+ .+.++.|.+.+.+.. ..-+..++..|....
T Consensus 439 L~~l~e~~g--~~~f--~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl 482 (569)
T KOG1242|consen 439 LGALLERLG--EVSF--DDLIPELSETLTSEKSLVDRSGAAQDLSEVL 482 (569)
T ss_pred HHHHHHHHH--hhcc--cccccHHHHhhccchhhhhhHHHhhhHHHHH
Confidence 988874311 1111 567777777776653 234444444444433
No 79
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.09 E-value=1e-05 Score=64.52 Aligned_cols=86 Identities=29% Similarity=0.394 Sum_probs=71.1
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 179 VKICIDGL-QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 179 v~~Lv~~L-~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
|+.|++.| +++++.+|..++.+|+.+. ...+++.|+.+++++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 56788888 8899999999999997432 2356999999999999999999999999873
Q ss_pred hcCcHHHHHHHHccC-CHHHHHHHHHHHH
Q 012413 258 NAGAIKSLVYVLKTG-TETSKQNAACALM 285 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~ 285 (464)
...+++.|.+++.++ +..++..|+.+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 345899999999886 5667899988874
No 80
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0002 Score=76.45 Aligned_cols=282 Identities=12% Similarity=0.047 Sum_probs=178.0
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHHhccCchhHHHHHhcC-ChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchH
Q 012413 178 TVKICIDGLQ--SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESG-AVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNK 253 (464)
Q Consensus 178 ~v~~Lv~~L~--s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g-~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~ 253 (464)
.+..++.... .++..||..|..+|.+--.-...+-..=.+.+ .+......-+++|.+++..|..+|..|.. .-+.-
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455554 46789999999999654321100000001112 23445566677999999999999999875 33333
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-c----chhhh-----------h---ccCChHHHHHHhhcC-
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-E----NKSSI-----------G---ACGAIPPLVSLLIYG- 313 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~----~~~~i-----------~---~~g~i~~Li~lL~~~- 313 (464)
..-........-+..++++++++..++...=.+++..+ + ..+.+ . -.+.+|.|+++|...
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 33333335555667788999999999998888777431 1 01100 0 125678888888652
Q ss_pred ------ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHH
Q 012413 314 ------SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIA 386 (464)
Q Consensus 314 ------~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~ 386 (464)
+...-++|-.||.-++..-+ +.|+. -++|-+-+-++.++-.-++.|+.+++.+-.. ...+..-...++++
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~--D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVG--DDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhc--ccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 23456667667666554211 11222 2334444455566666688899999988854 44555556678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHH-HHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCCCCC
Q 012413 387 ALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGL-LVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSSS 463 (464)
Q Consensus 387 ~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~-i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~~~~ 463 (464)
.++.++.+++-.++..++|+|+.++.+.++.+.- ....+.++.|+.=|+ +.|++-.+++|++-.|+++-.+...++
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~ 486 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSN 486 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999876643321 111233333333332 468999999999999997655554443
No 81
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.06 E-value=9.6e-06 Score=55.26 Aligned_cols=41 Identities=34% Similarity=0.409 Sum_probs=38.3
Q ss_pred CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 372 IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
+++++..+++.|+++.|+++|++.++.++..|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999999999973
No 82
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.05 E-value=3e-05 Score=73.57 Aligned_cols=181 Identities=17% Similarity=0.066 Sum_probs=118.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhccC--chhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHHHHHhcC
Q 012413 186 LQSSSVAIKRSAAAKLRLLAKNR--SDNRVLIGE--SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAG 260 (464)
Q Consensus 186 L~s~~~~vr~~A~~~L~~La~~~--~~~r~~i~~--~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g 260 (464)
..+.++..|..|+..|..+..++ ......+.+ ...+..+...+.+....+...|+.++..++..- ..-... -..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 36788999999999999998886 233333332 256677888888878889999999999998752 222222 234
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Cc---chHH
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LK---QNKE 336 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~---~~~~ 336 (464)
.+|.|++.+.++...++..|..+|..+..+-.....+ .++.+...+.+.++.+|..++..|..+.. .+ ....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 7899999999999999999999999987653311111 15666677788899999999999999877 33 1111
Q ss_pred -HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 337 -RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 337 -~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
...-...++.+...+.+.++++|..|-.++..+..
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 11113477889999999999999999999998863
No 83
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00057 Score=73.45 Aligned_cols=86 Identities=19% Similarity=0.054 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i 256 (464)
+.+...+.|++.++.+|++|+.|+..+-...|+.-+. .++.-.++|.+.++.|...++..+..++.. ++.-..+
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f 217 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF 217 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence 3333344445555555555555555554444433222 334444555555555555555555555542 3333333
Q ss_pred HhcCcHHHHHHHHc
Q 012413 257 TNAGAIKSLVYVLK 270 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~ 270 (464)
-+ .++.|+..|+
T Consensus 218 r~--l~~~lV~iLk 229 (866)
T KOG1062|consen 218 RD--LVPSLVKILK 229 (866)
T ss_pred HH--HHHHHHHHHH
Confidence 22 4444444443
No 84
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00062 Score=74.76 Aligned_cols=258 Identities=15% Similarity=0.161 Sum_probs=177.6
Q ss_pred hHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
.+..+.++..|. ..++.++.-|+.++..+..+ .++-..+...|.+-.|+.+|.+ -|..|..++.+|..|+.+++...
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~k 1847 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGK 1847 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHH
Confidence 344555555554 46778899999998777766 7777888889988889998865 57889999999999999988888
Q ss_pred HHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccc--hhhh--------------hc------------------
Q 012413 255 LITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEEN--KSSI--------------GA------------------ 299 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~--~~~i--------------~~------------------ 299 (464)
.-.+.|++..+..++ .+.+...|.+++..++.|..++-. |-.| .+
T Consensus 1848 eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPEL 1927 (2235)
T KOG1789|consen 1848 EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPEL 1927 (2235)
T ss_pred HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccc
Confidence 878888877776655 455677888888888877643110 0000 00
Q ss_pred --------------------------------------------------cC------------------------ChHH
Q 012413 300 --------------------------------------------------CG------------------------AIPP 305 (464)
Q Consensus 300 --------------------------------------------------~g------------------------~i~~ 305 (464)
-| .+..
T Consensus 1928 iWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek 2007 (2235)
T KOG1789|consen 1928 IWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEK 2007 (2235)
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHH
Confidence 00 0111
Q ss_pred HHHHhhcCCh--hhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhc
Q 012413 306 LVSLLIYGSS--RGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEE 382 (464)
Q Consensus 306 Li~lL~~~~~--~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~ 382 (464)
+.+++..+++ ........++-.|.+ ++...+++---|.+|.++..+...+..+-..|+.+|..|+.+.-+..++...
T Consensus 2008 ~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l 2087 (2235)
T KOG1789|consen 2008 VLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQL 2087 (2235)
T ss_pred HHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcc
Confidence 1222222211 111222223333433 5555666666889999999998777777788999999999999999999998
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChHHHHHhhhc
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-KNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s 436 (464)
.++..++..|+..-.. .-.|+.+|-.+..... +........|.++.|+.+|..
T Consensus 2088 ~~i~~~m~~mkK~~~~-~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2088 PCIDGIMKSMKKQPSL-MGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred ccchhhHHHHHhcchH-HHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 8888899988864333 3378888877775432 233445668999999999976
No 85
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00027 Score=66.94 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.++.+.+...+.+...+...+.+|+. .....+++.|+..|.+ ..|-+|..|+.+|+.+. .
T Consensus 37 ~i~~i~ka~~d~s~llkhe~ay~LgQ-----------~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~------ 98 (289)
T KOG0567|consen 37 AIKAITKAFIDDSALLKHELAYVLGQ-----------MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D------ 98 (289)
T ss_pred HHHHHHHhcccchhhhccchhhhhhh-----------hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c------
Confidence 45555556555555555566666632 3345788888887765 56778888888888776 2
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLA 288 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls 288 (464)
.+.++.|-+..+++-..++..+..++..+-
T Consensus 99 ---~~~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 99 ---PESLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred ---hhhHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 234556666666667777777777776664
No 86
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=0.0007 Score=71.08 Aligned_cols=270 Identities=14% Similarity=0.095 Sum_probs=175.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHH-HHHHHHHhcCCCchHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEH-SVTALLNLSLHENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~-A~~aL~~La~~~~~~~ 254 (464)
....+.+.+++...+...+..++..+..+.++... ..+.+.+.+..|-..+++.....++. +.-+......+-.
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--- 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--- 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---
Confidence 34666677888888888899999999888887433 44556788888888888865554443 2222222221111
Q ss_pred HHHhcCcH---HHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 255 LITNAGAI---KSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 255 ~i~~~g~i---~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
...+.+.+ |.++....+....+|..|..+...+... +...- ...+|.++.-+.......+..++..|+.++.
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11233444 4444455566788998888888776443 11100 1124555544444477889999999999999
Q ss_pred CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---Hhh--------------------------HHHHHh
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI---AEG--------------------------REAIVE 381 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~~~--------------------------~~~i~~ 381 (464)
+.+.+-......++|.|.+.|.+.++++++.+..+|..++.. ++. +..++.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 887777777778999999999999999999999999998742 210 111111
Q ss_pred ---cCcHHHHHHHH----hcCCHHHHHHHHHHHHHHhhcCHHhHH--HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 382 ---ENGIAALVEAI----EDGSVKGKEFAVLTLLQLCAESVKNRG--LLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 382 ---~g~i~~Lv~lL----~~~~~~v~~~A~~aL~~L~~~~~~~~~--~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+-.+..++.++ .+.+...+..++.+++|+|.--++.+. .+. -..+|.|-..+.+..|++|.-++.||+.+
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 11223333333 345777889999999999975422111 111 13456666666667899999999999766
Q ss_pred hcC
Q 012413 453 REP 455 (464)
Q Consensus 453 ~~~ 455 (464)
.+-
T Consensus 443 ~e~ 445 (569)
T KOG1242|consen 443 LER 445 (569)
T ss_pred HHH
Confidence 553
No 87
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00079 Score=71.56 Aligned_cols=184 Identities=14% Similarity=0.132 Sum_probs=126.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~ 254 (464)
.++-..++.+|++.-+.+|..|+-.|..+.-..|+. + ..++|.|..-|+++||.|+..|+.++|.|++ +|.+--
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 456677788999999999999999998887664432 2 2578999999999999999999999999997 454321
Q ss_pred --------HHH-------------------------hcCcHHHHHHHHccCCH-HHHHHHHHHHHH--hccc-ccchhhh
Q 012413 255 --------LIT-------------------------NAGAIKSLVYVLKTGTE-TSKQNAACALMS--LALI-EENKSSI 297 (464)
Q Consensus 255 --------~i~-------------------------~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~--Ls~~-~~~~~~i 297 (464)
.++ ....+++|..++.+... .+...+..++.. |+.. +++-..
T Consensus 218 ~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~as- 296 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSAS- 296 (877)
T ss_pred cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHH-
Confidence 111 11235555555555433 344444444432 2221 111110
Q ss_pred hccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
-.-++..|--++.+.|+.++.-.+-+++.+.. |+...+. --..++.+|.+.++.++-.|+..|..|..
T Consensus 297 -iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 297 -IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred -HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 01245667777888899999999999999988 5554332 23567889999999999999999998875
No 88
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.01 E-value=0.00015 Score=75.54 Aligned_cols=271 Identities=14% Similarity=0.027 Sum_probs=175.8
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH--HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR--VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE 250 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r--~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~ 250 (464)
..+...|..+++.|++..+++|..|+...+.++.--..+- +.+...|. .|..-|....|++.-..+.|++.+....
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 3456788889999999999999999998888764311110 12222332 3556677789999988888888886532
Q ss_pred chHH-HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 251 NNKT-LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 251 ~~~~-~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
..+. .=--.|.+|.|...|+.....+..+....+..++... +....--....-=.|+++|++.+.++|++|...++.+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 2211 0013578999999999999999999999999998873 3211111123334688999999999999999999988
Q ss_pred hcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 329 CSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 329 ~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
++.-. -..++..|+.-|+..+...+.-..-+++-.+.. ..--.++|.|+.=-..++..+|.-.+.+++
T Consensus 758 s~aiG------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~------cgpfsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 758 SRAIG------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEY------CGPFSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred HhhcC------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh------cCchhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 66211 122445555555554433333333333333210 001235566655555677888888888777
Q ss_pred HHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 409 QLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 409 ~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
.+...- ...++.+ .-..|.|-+.|.+.++--|.-|...++.|+=+.++.
T Consensus 826 fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 826 FMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred HHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 765431 1222222 234677777888889999999999999988665543
No 89
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.00026 Score=77.72 Aligned_cols=224 Identities=15% Similarity=0.081 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh-cCCCchHHHHHhcCcHHHHHHHHcc-
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNL-SLHENNKTLITNAGAIKSLVYVLKT- 271 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~L-a~~~~~~~~i~~~g~i~~Lv~lL~~- 271 (464)
|..|+..|..+-.-.+=.-..-..-|..|.+++||+++-.+++..-+-+=..| +-++..+..+++.++-..++..|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 44566666555433222223334569999999999999999887766666565 4466677777877777777777766
Q ss_pred C--CHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHH
Q 012413 272 G--TETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRP 346 (464)
Q Consensus 272 ~--~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~ 346 (464)
+ +++-|..|+.+|..+..+ .-++......+.+...+..|.++ .+-++.+.+-+|+.|-. .++.+-.-++.++.+.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 568899999999999877 56677777888888888888885 67789999999999988 5666666678899999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhC-----CHhhHHHH-----------HhcCcH----HHHHHHHhcCCHHHHHHHHHH
Q 012413 347 LVGMLAGQGEGMAEKAMVVLSLLAG-----IAEGREAI-----------VEENGI----AALVEAIEDGSVKGKEFAVLT 406 (464)
Q Consensus 347 Lv~lL~~~~~~v~~~A~~aL~nLa~-----~~~~~~~i-----------~~~g~i----~~Lv~lL~~~~~~v~~~A~~a 406 (464)
|+.+|.++-++|+..|.-+|+.+-+ +++....+ ..+..+ ..++.++++.++-++...+.+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999999999999985 34332222 112222 378888899999999999999
Q ss_pred HHHHhhcCHHh
Q 012413 407 LLQLCAESVKN 417 (464)
Q Consensus 407 L~~L~~~~~~~ 417 (464)
|..++.....+
T Consensus 727 ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 727 LSHFVVGYVSH 737 (1387)
T ss_pred HHHHHHhhHHH
Confidence 99888765443
No 90
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.99 E-value=0.00031 Score=68.14 Aligned_cols=228 Identities=14% Similarity=0.110 Sum_probs=163.8
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHcc--CCHHHHHHHHHHHHHhcccccchhhhhc-cC
Q 012413 226 PLLKCSDPWTQEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKT--GTETSKQNAACALMSLALIEENKSSIGA-CG 301 (464)
Q Consensus 226 ~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g 301 (464)
++++.=++-.+..|..+|.++...++.|..+.. ...-..++.+++. ++..++.+.+.+++.++..++..+.|-+ ..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445555666888999999999998888876654 4455677888876 5789999999999999998877655544 45
Q ss_pred ChHHHHHHhhcC-ChhhHHHHHHHHHHHhc-Cc-chHHHHHHcCCHHHHHHhhc-CC--CHHHHHHHHHH----------
Q 012413 302 AIPPLVSLLIYG-SSRGKKDALTTLYKLCS-LK-QNKERAVSAGAVRPLVGMLA-GQ--GEGMAEKAMVV---------- 365 (464)
Q Consensus 302 ~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~-~~-~~~~~iv~~g~v~~Lv~lL~-~~--~~~v~~~A~~a---------- 365 (464)
.|.-|+++.+.. ...|.+-+++++.|++. .+ .....+.-.|-+..-++.|. .. +++++...-.+
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 677788888765 66788999999999988 33 33344444554444455543 22 33332221111
Q ss_pred -------HHHH-----hCC---------HhhHHHHHhcC--cHHHHHHHHhcCCHH-HHHHHHHHHHHHhhcCHHhHHHH
Q 012413 366 -------LSLL-----AGI---------AEGREAIVEEN--GIAALVEAIEDGSVK-GKEFAVLTLLQLCAESVKNRGLL 421 (464)
Q Consensus 366 -------L~nL-----a~~---------~~~~~~i~~~g--~i~~Lv~lL~~~~~~-v~~~A~~aL~~L~~~~~~~~~~i 421 (464)
+..| +-+ ..+...+.+.+ .+..|.++++...+. .-..|+.-++++....|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 1111 101 14566666544 689999999976554 56678888999999999999999
Q ss_pred HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 422 VREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 422 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..-|+=+.+++++.+++++||..|..|+..+-
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 91
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.97 E-value=0.00023 Score=75.64 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=107.1
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcC-CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHH-H
Q 012413 303 IPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAG-AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAI-V 380 (464)
Q Consensus 303 i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g-~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i-~ 380 (464)
+..++..|++.++.+|.+|+.+++.|+..-..+...-..| .--.|.+.|....+++.-..+++|..+...-..-+.. =
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 4556678889999999999999999988544332221111 1235778888888888666666665554211000000 0
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH---hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK---NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~---~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
-.+.+|.|.-.|++...+++++++..++.+|..+++ .|..|+ +---|+++|++.+..+|+.|...++.|++.
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 146889999999999999999999999999987664 233332 344588899999999999999999999863
No 92
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.93 E-value=9.6e-05 Score=70.13 Aligned_cols=184 Identities=15% Similarity=0.048 Sum_probs=118.8
Q ss_pred cCCCHHHHHHHHHHHHHhcCCC---chHHHHHh--cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCCh
Q 012413 229 KCSDPWTQEHSVTALLNLSLHE---NNKTLITN--AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAI 303 (464)
Q Consensus 229 ~~~~~~v~~~A~~aL~~La~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i 303 (464)
.+.+.+.+..|+.-|..+.... +....+.+ ...+..++..+.+....+...|+.++..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4577888999999998887633 33333332 256677888888888899999999999998763322211224468
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh-hHHHHH--
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE-GREAIV-- 380 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~-- 380 (464)
|.|++.+.+....++..|..+|..++.+-.....+ .++.+...+.+.++.++..++..|..+...-. ....+.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999999999999999999998854411111 14567777888899999999999999874322 111111
Q ss_pred --hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 381 --EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 381 --~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
-...++.+..++.+.++++|..|-.+++.+...-++
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 145788899999999999999999999999765443
No 93
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00036 Score=74.84 Aligned_cols=264 Identities=18% Similarity=0.143 Sum_probs=160.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCch-HH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN-KT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~-~~ 254 (464)
......|.+++++.++.+|..++.++..+-..+. +.+.+.|.++.|-.++.+++|.|..+|+.+|..+.....+ -.
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 3566777889999999999999999888765543 5666889999999999999999999999999999764322 11
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
.......+..++..|..-++--+...+.++.+=.-.+. ... ..+..+...|.+.++.+...+..++.++...-.
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 11112234444455544444444444444433221111 111 224556666777788888888888888877433
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCH-------------------------hhHHHHHhcC----
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIA-------------------------EGREAIVEEN---- 383 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~-------------------------~~~~~i~~~g---- 383 (464)
.....+....-++|+.++.... .++.-++.=+.-+- ..+ +....+....
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 3333333446667777776654 43333322222111 000 1111111111
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+..|.++-.+-+.+.-..+++|+++++..-++. ++.+..|+++++..-..+...+...++.|-+
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 3344444444568888999999999998643221 6788888888886666555555555665544
No 94
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00015 Score=76.20 Aligned_cols=217 Identities=18% Similarity=0.147 Sum_probs=150.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CC------
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HE------ 250 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~------ 250 (464)
++..++....+.+..||..|+..|..|... .+..+ -.....++++.+++..||..|+.++.-.+. .+
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 444466677778888888888888777663 22222 245667889999999999999777665544 21
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc--------------------------------------
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-------------------------------------- 292 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-------------------------------------- 292 (464)
.....+.+ .+...+...+.+.+-.+|..|+.+|+.+-..++
T Consensus 273 ~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 273 SEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 11122222 367777788888888888888777765432110
Q ss_pred -------------chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHH
Q 012413 293 -------------NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMA 359 (464)
Q Consensus 293 -------------~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~ 359 (464)
....|+..|+-..++.=|.++--+||++|...++.|+.+... ....++..|+.++.++...|+
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHH
Confidence 011233445556677777777788999999999999885432 122267889999999999999
Q ss_pred HHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 012413 360 EKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQL 410 (464)
Q Consensus 360 ~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L 410 (464)
..|..+|..|+.+- .+++.-++.++..|.+.+.++|+..-..|++.
T Consensus 428 L~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 428 LKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999998752 23345577888899999999998877777664
No 95
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.85 E-value=0.0011 Score=69.35 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=172.1
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhh----------cCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHH
Q 012413 198 AAKLRLLAKNRSDNRVLIGESGAVPALVPLL----------KCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLV 266 (464)
Q Consensus 198 ~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL----------~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv 266 (464)
+.+|+-++++ +.....+....++..|+.+- ...++.+...|+.+|+|+..+ +..|+.+++.|+.+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4455555555 33444444445555555544 346889999999999999885 68888999999999999
Q ss_pred HHHccC-----CHHHHHHHHHHHHHhccc-ccchhhhhc-cCChHHHHHHhhcC-----------------ChhhHHHHH
Q 012413 267 YVLKTG-----TETSKQNAACALMSLALI-EENKSSIGA-CGAIPPLVSLLIYG-----------------SSRGKKDAL 322 (464)
Q Consensus 267 ~lL~~~-----~~~v~~~a~~aL~~Ls~~-~~~~~~i~~-~g~i~~Li~lL~~~-----------------~~~v~~~A~ 322 (464)
..|+.. +.++.-.....|.-++.. .+.+..+++ .+++..++..|... +......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999887 788888888888887764 456666655 57788777766421 223456788
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHHhC-CHhh-------HHHH----Hh
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLAG---------QGEGMAEKAMVVLSLLAG-IAEG-------REAI----VE 381 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~---------~~~~v~~~A~~aL~nLa~-~~~~-------~~~i----~~ 381 (464)
.++.|++.+-.....-...+.++.|+.++.. +......++..+|.|+-- .... ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 8999998743322111122344444444321 124557888888888831 1111 1111 11
Q ss_pred cCcHHHHHHHHhc-----C---CHHHHHHHHHHHHHHhhcCHHhHHHHHH----------------cCChHHHHHhhhcC
Q 012413 382 ENGIAALVEAIED-----G---SVKGKEFAVLTLLQLCAESVKNRGLLVR----------------EGGIPPLVALSQTG 437 (464)
Q Consensus 382 ~g~i~~Lv~lL~~-----~---~~~v~~~A~~aL~~L~~~~~~~~~~i~~----------------~g~i~~Lv~lL~s~ 437 (464)
...+..|+++|.. . -...-..-+.+|..++..+...|..+.. ...-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2367788888763 1 1346667888888888877777766654 35667899999998
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 012413 438 SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~~~~ 456 (464)
.+.+|..++..|-.|++..
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999998888643
No 96
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.00062 Score=74.91 Aligned_cols=219 Identities=13% Similarity=0.070 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHH-hcccccchhhhhccCChHHHHHHhhc-
Q 012413 236 QEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMS-LALIEENKSSIGACGAIPPLVSLLIY- 312 (464)
Q Consensus 236 ~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~i~~~g~i~~Li~lL~~- 312 (464)
|..|+..|+..-. .+=.-..-..-|..|.+++||++.-.++|-.-+.+=.. |+.++..+..+++.++-...++.|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 3455555555432 12122233467999999999999999998765554444 55666667777776666666667765
Q ss_pred C--ChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHH
Q 012413 313 G--SSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAA 387 (464)
Q Consensus 313 ~--~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~ 387 (464)
. +++-|.-|+.+|+.++. .+-+++.-.+.+.+..-+..|.++ .+-.+.-++-+|+.|= .+++.|=.=.+.++.+.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 45788889999999999 567888888899999999999885 4667888999999997 45666666667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcC----HHhHHH-----------HHHcCCh----HHHHHhhhcCCHHHHHHHHHH
Q 012413 388 LVEAIEDGSVKGKEFAVLTLLQLCAES----VKNRGL-----------LVREGGI----PPLVALSQTGSVRAKHKAETL 448 (464)
Q Consensus 388 Lv~lL~~~~~~v~~~A~~aL~~L~~~~----~~~~~~-----------i~~~g~i----~~Lv~lL~s~~~~v~~~A~~a 448 (464)
|..+|.++.++||..|+.||+.+.... ++.... +.-+..+ ..|+.++..+.+-++...+.+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 999999999999999999999998742 221111 1112222 378888889999999999988
Q ss_pred HHHhhc
Q 012413 449 LGYLRE 454 (464)
Q Consensus 449 L~~L~~ 454 (464)
|..+.-
T Consensus 727 ls~~~~ 732 (1387)
T KOG1517|consen 727 LSHFVV 732 (1387)
T ss_pred HHHHHH
Confidence 887753
No 97
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0094 Score=60.43 Aligned_cols=236 Identities=18% Similarity=0.116 Sum_probs=174.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-----c----hhHHHHHhcCChHHHHHhhcCCCHHH------HHHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-----S----DNRVLIGESGAVPALVPLLKCSDPWT------QEHSV 240 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-----~----~~r~~i~~~g~i~~Ll~lL~~~~~~v------~~~A~ 240 (464)
...|+.|+.+|.+.+.++-...+..|..++..+ . ..-..+++.++++.|++.++.-+..+ ...+.
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 357888899999999999999999999998542 1 34566778899999999987644333 45666
Q ss_pred HHHHHhcC-CCchHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhh---cC
Q 012413 241 TALLNLSL-HENNKTLITNAGAIKSLVYVLKTG--TETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLI---YG 313 (464)
Q Consensus 241 ~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~---~~ 313 (464)
..+-|+.. .++....+++.|.+.-|++-+... -..-+.+|..+|.-+-.+. +++.......+|..+++-+. ..
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 77777766 567778888888888777755443 3467788888888887774 58888888889999887664 22
Q ss_pred C------hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH---hhHHHHHhcCc
Q 012413 314 S------SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA---EGREAIVEENG 384 (464)
Q Consensus 314 ~------~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~---~~~~~i~~~g~ 384 (464)
+ .+.-.+...+|+.+...++|+..++...+++...-+++. ....+.-++.+|-....++ +++..+++.+|
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 2 246678888999999999999999999898877777765 4555778889998888544 56778888777
Q ss_pred HHHHHHHHh-cC---------CHHHHHHHHHHHHHHhh
Q 012413 385 IAALVEAIE-DG---------SVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 385 i~~Lv~lL~-~~---------~~~v~~~A~~aL~~L~~ 412 (464)
...+..+.- .+ ....-+..+..|+.+-.
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 776665543 22 23445566666666654
No 98
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.76 E-value=0.0027 Score=66.51 Aligned_cols=228 Identities=17% Similarity=0.133 Sum_probs=161.2
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHhcC-CCchHHHHHh-c
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-----DPWTQEHSVTALLNLSL-HENNKTLITN-A 259 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~-----~~~v~~~A~~aL~~La~-~~~~~~~i~~-~ 259 (464)
...++.+...|++||.|+...++..|+.+.+.|..+.++..|+.. +.++.....+.|.-++. .++.+..+++ .
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 457889999999999999999999999999999999999999886 78899999999888876 4566666655 6
Q ss_pred CcHHHHHHHHcc-----------------CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC---------
Q 012413 260 GAIKSLVYVLKT-----------------GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--------- 313 (464)
Q Consensus 260 g~i~~Lv~lL~~-----------------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--------- 313 (464)
+++..|+..|.. .+......++..+.|+..+......-.+...++.|+.+|..-
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 888888876642 134567788999999987743322223455677777665421
Q ss_pred ChhhHHHHHHHHHHHhcCc-ch-------HHH----HHHcCCHHHHHHhhcC----C----CHHHHHHHHHHHHHHhCC-
Q 012413 314 SSRGKKDALTTLYKLCSLK-QN-------KER----AVSAGAVRPLVGMLAG----Q----GEGMAEKAMVVLSLLAGI- 372 (464)
Q Consensus 314 ~~~v~~~A~~aL~nL~~~~-~~-------~~~----iv~~g~v~~Lv~lL~~----~----~~~v~~~A~~aL~nLa~~- 372 (464)
.......+..+|.|+-... .. ... ......+..|+.+|.. . -.+.....+.+|..++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 3346777888888773211 10 000 1123356667776642 1 124466677888888854
Q ss_pred HhhHHHHHh----------------cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 373 AEGREAIVE----------------ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 373 ~~~~~~i~~----------------~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
...|+.+.. ...-..|++++.+..+.++..++..|+.||..+
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 444555443 235788999999988999999999999999654
No 99
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00023 Score=73.31 Aligned_cols=138 Identities=10% Similarity=0.064 Sum_probs=117.3
Q ss_pred HHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCH
Q 012413 279 NAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGE 356 (464)
Q Consensus 279 ~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~ 356 (464)
.++..|..++.. .-.|..+.+....+.|+++|.+++..+.--+...++|+.. ....+..|++.|.+..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 445555566554 4567778888899999999999999999999999999988 67788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC--HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 357 GMAEKAMVVLSLLAGI--AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 357 ~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.++.+..|+|+++..+ ..-+-.++..-++..++.+..++.-.+++.+...|.|+++.+..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~k 549 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSK 549 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccccc
Confidence 9999999999999944 33455677788899999999999999999999999999985433
No 100
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0072 Score=66.80 Aligned_cols=263 Identities=17% Similarity=0.183 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHh----cCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGE----SGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~----~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
.-..-++.+|.|+...+++....+.. -|-.+.+...|.. .++.++.-|+.++..+..+.+.-..++..|.+..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 34456899999999988877655443 3778888888876 788999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhcCcc----hH------
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCSLKQ----NK------ 335 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~~~~----~~------ 335 (464)
.+|.+. +..|..++.+|..|+..++......+.|++..+..++ .+.+++.|.+|+..|+.|...+- -.
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 999664 6689999999999999988877778889888888765 45688999999999999987542 11
Q ss_pred --HHHHH--cCCHHHHHHhhcCC--CH------HHHHHHHHHHHHHhCC--------H----------------------
Q 012413 336 --ERAVS--AGAVRPLVGMLAGQ--GE------GMAEKAMVVLSLLAGI--------A---------------------- 373 (464)
Q Consensus 336 --~~iv~--~g~v~~Lv~lL~~~--~~------~v~~~A~~aL~nLa~~--------~---------------------- 373 (464)
+.+++ .++.+..|.++... .+ ..+...-..+..|+.. +
T Consensus 1899 LP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred chHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence 11111 22335666666432 22 2244444555555420 0
Q ss_pred ---hhHHHHHh------------cCcHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc
Q 012413 374 ---EGREAIVE------------ENGIAALVEAIEDGSV--KGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 374 ---~~~~~i~~------------~g~i~~Lv~lL~~~~~--~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
-.|..+.. .|.++.++++|....+ ..-..-..++-.|.+..|...+.+-..|-+|.++..+..
T Consensus 1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence 11222222 2445666777764332 223333344455555667777777778999999999877
Q ss_pred CCHHHHHHHHHHHHHhhcC
Q 012413 437 GSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 437 ~~~~v~~~A~~aL~~L~~~ 455 (464)
.+..+-..|.+.|..|+++
T Consensus 2059 ~n~s~P~SaiRVlH~Lsen 2077 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSEN 2077 (2235)
T ss_pred cCCcCcHHHHHHHHHHhhc
Confidence 7666667777777777654
No 101
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.0034 Score=65.38 Aligned_cols=274 Identities=14% Similarity=0.128 Sum_probs=172.9
Q ss_pred CCchHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhccCchhHHHHHhcCCh-HH-HHHhhcC-CCHHHHHHHHHHHHH-hc
Q 012413 173 EDLQPTVKICIDGLQSSS-VAIKRSAAAKLRLLAKNRSDNRVLIGESGAV-PA-LVPLLKC-SDPWTQEHSVTALLN-LS 247 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~-~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i-~~-Ll~lL~~-~~~~v~~~A~~aL~~-La 247 (464)
+.|++.++.++.....+. ..++..++.++++.+..... ...+...+++ -. ...-++. .+..+|..|+.+|.+ +-
T Consensus 129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM 207 (858)
T ss_pred ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 567888888888877644 56788899999888866333 2333333332 22 2334444 677899999999988 32
Q ss_pred C------CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHH
Q 012413 248 L------HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKD 320 (464)
Q Consensus 248 ~------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~ 320 (464)
. .++.+.. .+...++.-+.++.+++..|.++|..|..- -+.-+.+.+.-......+.+++.+.++...
T Consensus 208 fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~q 282 (858)
T COG5215 208 FVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQ 282 (858)
T ss_pred HHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 1 1222222 334456667788999999999999887543 233334444444455566778889999999
Q ss_pred HHHHHHHHhcCc-chH----------------HHHHHcCCHHHHHHhhcCCC----H---HHHHHHHHHHHHHhCCHhhH
Q 012413 321 ALTTLYKLCSLK-QNK----------------ERAVSAGAVRPLVGMLAGQG----E---GMAEKAMVVLSLLAGIAEGR 376 (464)
Q Consensus 321 A~~aL~nL~~~~-~~~----------------~~iv~~g~v~~Lv~lL~~~~----~---~v~~~A~~aL~nLa~~~~~~ 376 (464)
|...-..+|..+ +.- ..-.-+.++|.|+.+|...+ . .+...|..||--.+... .
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--g 360 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--G 360 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--h
Confidence 988766666632 110 00012447899999996422 1 23445555555444211 0
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
..|.+. +..-+-+-+++++-.-++.|+.+++.+.....+.+..-.-..++|.+...+.++.--++..++|+++.|+++
T Consensus 361 d~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 361 DKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 111111 222223344567788899999999999876544444333356788888888877779999999999999875
No 102
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.59 E-value=0.00011 Score=53.31 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 012413 233 PWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSL 287 (464)
Q Consensus 233 ~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 287 (464)
|.+|..|+++|++++........-....+++.|+.+|+++++.||..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999987654444445567999999999999999999999999875
No 103
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.57 E-value=0.0032 Score=70.49 Aligned_cols=265 Identities=15% Similarity=0.117 Sum_probs=172.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC----Cc
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH----EN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~----~~ 251 (464)
...|..++..++. ...|.+|+..|..++..-.. +.. =..++|.++.+++++.++||..|+.+|..+... +.
T Consensus 424 vs~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~d--e~~-LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKT--IQTKLAALELLQELSTYIDD--EVK-LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhc--chhHHHHHHHHHHHhhhcch--HHH-HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 4566666666665 45677999999998866332 111 236899999999999999999999999987432 12
Q ss_pred hHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccc----cchhhhhcc------------------------CC
Q 012413 252 NKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIE----ENKSSIGAC------------------------GA 302 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~----~~~~~i~~~------------------------g~ 302 (464)
.-..+.-.-.+|.|-.++.+ ....+|..-+..|..||... +..+.+... ..
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 21233333477888888888 45566766666666665320 111110000 02
Q ss_pred hH-HHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHH
Q 012413 303 IP-PLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVS----AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGRE 377 (464)
Q Consensus 303 i~-~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~----~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 377 (464)
+. ....+|.++.+-|++..+..|.-||.. |.+ .=.++.|+.+|.+.+..+|..-..-|..++.+-.-
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~-- 650 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW-- 650 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--
Confidence 22 233566667778888888888888761 222 12568899999988777766555555544432111
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 378 AIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 378 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.=++++.+|.|.+-|.+..+.|...|+++|.-|+...--.+..+.+ .++...-+|-.++.-+|+.++..+..+.++
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 1134677899999999999999999999999998654322333322 344444556678889999998888776653
No 104
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0049 Score=68.41 Aligned_cols=258 Identities=14% Similarity=0.132 Sum_probs=160.2
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCch
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENN 252 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~ 252 (464)
.++..++.|+..|++.+..||..|++.++.++...|. .+ ...+|...+.++.- +++..-..|+.+|+.|+...-.
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---EL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 4567889999999999999999999999999988762 22 23567777776554 3456667999999999864211
Q ss_pred HHHHHhcCcHHHHHHHHccC--------CHHHHHHHHHHHHHhcccccch--hhhhccCChHHHHHHhhcCChhhHHHHH
Q 012413 253 KTLITNAGAIKSLVYVLKTG--------TETSKQNAACALMSLALIEENK--SSIGACGAIPPLVSLLIYGSSRGKKDAL 322 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~--------~~~v~~~a~~aL~~Ls~~~~~~--~~i~~~g~i~~Li~lL~~~~~~v~~~A~ 322 (464)
..... ..++|.+++.|.-+ ...+|..||.++|.++...+.. ..+...-+-..|+..+-+....+|++|.
T Consensus 414 lps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 414 LPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred chHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 11111 12677777777543 3568999999999887652211 1122211222333444566778999999
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhh---cCCCHHHHHHHHHHHH-HHhCCHhhHHHHHhcCcHHHHHHH-HhcCCH
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGML---AGQGEGMAEKAMVVLS-LLAGIAEGREAIVEENGIAALVEA-IEDGSV 397 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL---~~~~~~v~~~A~~aL~-nLa~~~~~~~~i~~~g~i~~Lv~l-L~~~~~ 397 (464)
.|+..... +.|-+|.=+.++ +...-..+.++-..|. .++.++..+.-+++ .|+.. +.+-+.
T Consensus 493 AAlqE~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 493 AALQENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDV 558 (1133)
T ss_pred HHHHHHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccH
Confidence 88876533 222222111222 1111222344333332 23344444444433 22222 446789
Q ss_pred HHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 398 KGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 398 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+|+.++++|.+|....++ ....+.+++|++..-+.+...+..+..+.+.+..
T Consensus 559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 9999999999998865443 3345789999999999988888877777666554
No 105
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00041 Score=73.04 Aligned_cols=223 Identities=17% Similarity=0.080 Sum_probs=146.2
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHH---Hhcccc---c
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALM---SLALIE---E 292 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~---~Ls~~~---~ 292 (464)
+++.-|+.+..+.|+.|+..|+.+|..|...-...+. .....++++.+.+..+|..|...++ |..-.+ +
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3344477777788888999999988887753232222 4566789999999999998866554 444211 1
Q ss_pred chhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHH--
Q 012413 293 NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLL-- 369 (464)
Q Consensus 293 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nL-- 369 (464)
+-..=....++..+...+.+.+..+|-.|+.+|+.+.. +.+...+..+..+...+ +.. ....+.......+-
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~l----RRk-r~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRL----RRK-RTAHKRPKALYSSGEW 347 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhh----hhh-hhcccchHHHHhcCCc
Confidence 11111123468888899999999999999999999877 34444444443222211 110 00011111111111
Q ss_pred h------------CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC
Q 012413 370 A------------GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG 437 (464)
Q Consensus 370 a------------~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 437 (464)
+ ..++....|+..|+..+++.-+.++=-+||.+|+..++.|+..+|..... .+..|++++.++
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE 422 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE 422 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH
Confidence 0 01234556778888888888888888889999999999998876654433 477888888888
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 012413 438 SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~~~~ 456 (464)
-..||.+|..+|+.|+.+.
T Consensus 423 ~~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8889999999998888764
No 106
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0069 Score=65.39 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=132.3
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHH
Q 012413 228 LKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPL 306 (464)
Q Consensus 228 L~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L 306 (464)
|++.+.-++..|+.+|++++..+-.+ ...|.+.++|+..++.+|..|+.+...+-.. ++..+. .++.-
T Consensus 116 L~s~nq~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~ 184 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAF 184 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHH
Confidence 45567778888999999988644333 2467778899999999999998888876543 343333 36777
Q ss_pred HHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcC---------------CCHHHHHHHHHHHHHHh
Q 012413 307 VSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAG---------------QGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 307 i~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~---------------~~~~v~~~A~~aL~nLa 370 (464)
.++|.+.+..|....+..+..+|. +++....+.+ .++-+|..|+. +++-++...+..|+-|.
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 788888889999999999999988 5566555555 55556655541 24566777887777776
Q ss_pred CCHhhHHH-H--------Hh-----cCcHHHHHHHHh-----cCCHHHHHHHHHHHHHHhhcCHHhHHHH----------
Q 012413 371 GIAEGREA-I--------VE-----ENGIAALVEAIE-----DGSVKGKEFAVLTLLQLCAESVKNRGLL---------- 421 (464)
Q Consensus 371 ~~~~~~~~-i--------~~-----~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~i---------- 421 (464)
.++..... + .+ .-|-..|-+++. ..+..++..|+.+|+.+......+-+.+
T Consensus 263 q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~ 342 (866)
T KOG1062|consen 263 QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ 342 (866)
T ss_pred CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc
Confidence 43211111 0 00 001122222222 2445566666666665554332221111
Q ss_pred ------HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 422 ------VREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 422 ------~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.++ =..+++.|++.++.+|++|.+++-.|...
T Consensus 343 ~d~~avqrH--r~tIleCL~DpD~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 343 QDPTAVQRH--RSTILECLKDPDVSIKRRALELSYALVNE 380 (866)
T ss_pred CCcHHHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 111 14567778888888888888887776643
No 107
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=0.0025 Score=68.81 Aligned_cols=243 Identities=18% Similarity=0.120 Sum_probs=180.4
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH-HhcCCCchHHHHHhcCcHHHHHHHHccCCHH-HHHHHHHHHHH
Q 012413 209 SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALL-NLSLHENNKTLITNAGAIKSLVYVLKTGTET-SKQNAACALMS 286 (464)
Q Consensus 209 ~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~-~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-v~~~a~~aL~~ 286 (464)
...+...++.|+...|+.+.....+..+..+.++|. .+....+- ....++++...+...... -...++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 444566778899999999999888898999999987 33332111 123556666666544322 23578999999
Q ss_pred hcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHH-HH-cCCHHHHHHhhcCCCHHHHHHHH
Q 012413 287 LALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERA-VS-AGAVRPLVGMLAGQGEGMAEKAM 363 (464)
Q Consensus 287 Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~i-v~-~g~v~~Lv~lL~~~~~~v~~~A~ 363 (464)
|+..+ ..|+.+...-+++.+-.++..+++..++.++..+.||..++..-+.. ++ ...++....++..........++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 99884 56777888777888888888899999999999999999988755544 44 56777777777776666677778
Q ss_pred HHHHHHhCCHhh-HHHHHh-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHH
Q 012413 364 VVLSLLAGIAEG-REAIVE-ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRA 441 (464)
Q Consensus 364 ~aL~nLa~~~~~-~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v 441 (464)
+++..++...++ +..+.+ ..+-..++.++.+.+..+|+..+....++.....+....+.....++.+..+-+......
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~ 728 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPK 728 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence 888877754433 332333 567888999999999999999999999987766666667777777888777777677778
Q ss_pred HHHHHHHHHHhhcCC
Q 012413 442 KHKAETLLGYLREPR 456 (464)
Q Consensus 442 ~~~A~~aL~~L~~~~ 456 (464)
++.++..|...-+++
T Consensus 729 ~~~~~~~l~~a~~~~ 743 (748)
T KOG4151|consen 729 REDAAPCLSAAEEYG 743 (748)
T ss_pred hhhhhhHHHHHHHhh
Confidence 888888877765544
No 108
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0081 Score=64.45 Aligned_cols=317 Identities=13% Similarity=0.087 Sum_probs=175.8
Q ss_pred hHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhh-hhcccCchhhHhhhcC---C
Q 012413 98 DDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLG-FLQRENFSTEIIESIS---P 172 (464)
Q Consensus 98 ~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~-~L~~~~~s~~i~~~~~---~ 172 (464)
.-++.+.+=|++ ++-||+||+-++..+ +.+. +.++|--+.++. +|..+.+..--+.++. .
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsI-----yk~~----------~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSI-----YKNF----------EHLIPDAPELIESFLLTEQDPSCKRNAFLMLFT 198 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhH-----Hhhh----------hhhcCChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence 344455566777 899999999999987 3221 225565555564 3443332111111110 0
Q ss_pred CCchHHHHHHHHh---cCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 012413 173 EDLQPTVKICIDG---LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 173 ~~~~~~v~~Lv~~---L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~ 249 (464)
-+-+.++.+|..+ ..+-++..+..-+..++..+..++.-+ ...|..+..+|.+.++.++..|+..|..++..
T Consensus 199 ~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 199 TDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred cCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 1113455554444 345567778888888888877655443 35677899999999999999999999888876
Q ss_pred CchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 250 ENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 250 ~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
+..-+. +...++.++.. .+-.++.-...-|..+.. .++. + -.|.+--++.+|..++-++++.++.....|
T Consensus 274 p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~-i-l~~l~mDvLrvLss~dldvr~Ktldi~ldL 344 (948)
T KOG1058|consen 274 PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEK-I-LQGLIMDVLRVLSSPDLDVRSKTLDIALDL 344 (948)
T ss_pred HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHH-H-HHHHHHHHHHHcCcccccHHHHHHHHHHhh
Confidence 654333 23344554433 333444444444444431 1111 1 133455667788888999999999988888
Q ss_pred hcCcchH--HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHH
Q 012413 329 CSLKQNK--ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVL 405 (464)
Q Consensus 329 ~~~~~~~--~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 405 (464)
..+.+.- -.+........-- -=.+....-|..-..+++..+ .+++.. +.+|+.|++.+.+.++..-...+.
T Consensus 345 vssrNvediv~~Lkke~~kT~~-~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~ 418 (948)
T KOG1058|consen 345 VSSRNVEDIVQFLKKEVMKTHN-EESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLM 418 (948)
T ss_pred hhhccHHHHHHHHHHHHHhccc-cccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHH
Confidence 7654321 1111110100000 001112233556666777766 455433 345677888887776655444444
Q ss_pred HHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 012413 406 TLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 406 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~ 454 (464)
.+......-+..|.. .++.|+..+.. ....+-+.|.|.++.-++
T Consensus 419 FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 419 FVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 444444333333333 34555555433 345666777777766554
No 109
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.49 E-value=0.00061 Score=56.00 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 012413 359 AEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE--DGSVKGKEFAVLTLLQLCAESVKNRGLLVRE 424 (464)
Q Consensus 359 ~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 424 (464)
+...+.+|+||+ .++..+..+.+.|+++.++.... +.+|.+++.|++|+.+|+..+++++..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 566788999999 78899999999999999999987 4689999999999999999999999988774
No 110
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.019 Score=61.95 Aligned_cols=255 Identities=14% Similarity=0.090 Sum_probs=147.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i 256 (464)
-|..+-+.|+++++.+|..|+++|..+= ..++..=++-.+-++..+..+.||..|+.|+-.|=. +++.+..+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 4566678899999999999999985442 222221222233456677889999999999988744 44444432
Q ss_pred HhcCcHHHHHHHHccCCHHHHH-------------------------------------HHHHHHHHhcccc---cch--
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQ-------------------------------------NAACALMSLALIE---ENK-- 294 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~-------------------------------------~a~~aL~~Ls~~~---~~~-- 294 (464)
. ..+=.||.+.++-|.- .....|..-|.+. ...
T Consensus 182 ~-----e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~ 256 (968)
T KOG1060|consen 182 E-----EVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVD 256 (968)
T ss_pred H-----HHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccc
Confidence 2 2222333333333332 3333332222210 000
Q ss_pred --------------------hhhhccCChHHHH----HHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHh
Q 012413 295 --------------------SSIGACGAIPPLV----SLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGM 350 (464)
Q Consensus 295 --------------------~~i~~~g~i~~Li----~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~l 350 (464)
.-+...--+..|+ .||.+.++.|..+++.+.+.|+-..+. .+.+.+|+.+
T Consensus 257 ~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrL 330 (968)
T KOG1060|consen 257 SSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRL 330 (968)
T ss_pred cccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHH
Confidence 0000000112222 345567888999999999998763322 1246788888
Q ss_pred hcCCCHHHHHHHHHHHHHHhC-CH-------------------------hhHHHHHhcCcH----HHHHHHHhcCCHHHH
Q 012413 351 LAGQGEGMAEKAMVVLSLLAG-IA-------------------------EGREAIVEENGI----AALVEAIEDGSVKGK 400 (464)
Q Consensus 351 L~~~~~~v~~~A~~aL~nLa~-~~-------------------------~~~~~i~~~g~i----~~Lv~lL~~~~~~v~ 400 (464)
|.++ .+++.-.+..+..|+. .+ +.-..+..++-+ +.+..++++.+..+-
T Consensus 331 Lrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~fa 409 (968)
T KOG1060|consen 331 LRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFA 409 (968)
T ss_pred HhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHH
Confidence 8763 4556666666666652 11 112233344434 444455556666677
Q ss_pred HHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 401 EFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 401 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
..|+.+|+..+... .-+...++..|+.++.+.+..|...|+-.++.|-+..
T Consensus 410 a~aV~AiGrCA~~~-----~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 410 AAAVKAIGRCASRI-----GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred HHHHHHHHHHHHhh-----CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 77777777655432 1234457889999999999999999988888887543
No 111
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.49 E-value=0.00026 Score=47.65 Aligned_cols=40 Identities=33% Similarity=0.457 Sum_probs=36.4
Q ss_pred CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc
Q 012413 250 ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLAL 289 (464)
Q Consensus 250 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~ 289 (464)
++++..+.+.|+++.|+++|++++.+++..++|+|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477888999999999999999999999999999999863
No 112
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0015 Score=70.21 Aligned_cols=261 Identities=19% Similarity=0.179 Sum_probs=174.1
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+-.+.+.++++....|.+.++-+--.|.+.+...+.. ..+++..++.=..+++|.+|..|.+.++.+-...
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---- 117 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---- 117 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH----
Confidence 3456677788888888888888888889998886653 3367888888888899999999999887765321
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
+. .-...+|...++++++.+|..++..+.++ +....+.+.+.|.++.|-.++.+.++.|..+|+.+|..+.....+
T Consensus 118 -i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 118 -IT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred -HH-HHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 11 12577899999999999999999888887 445567778899999999999999999999999999999884432
Q ss_pred HHHH-HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh--hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 335 KERA-VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 335 ~~~i-v~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
...+ +....+..++..+..... +.-+.+|.+++..-. .++. ...+..+...+.+.+..+...+...+.++.
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 1100 111123334444433332 333344444442211 1111 124556666777777777788888887777
Q ss_pred hcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 412 AESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 412 ~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
..-+. .....-....++|+.++.+.. +++..|..=+..+-..+
T Consensus 268 ~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~ 310 (734)
T KOG1061|consen 268 KYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKR 310 (734)
T ss_pred HHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhC
Confidence 54333 222333456677777776665 66666555444444333
No 113
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.39 E-value=0.0003 Score=51.00 Aligned_cols=55 Identities=20% Similarity=0.125 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 397 VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 397 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+.+|..|+++|++++...+..... ....+++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988766554443 3356799999999999999999999999875
No 114
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0086 Score=62.44 Aligned_cols=260 Identities=11% Similarity=0.014 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcC----ChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHHHhcCcH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESG----AVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAI 262 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g----~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i 262 (464)
.++..+|..|+.+|.+-.. ..+..+-..+ .+...+..-+.++.+++..|..+|..|-. +-+.-+...+.-..
T Consensus 189 et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~ 265 (858)
T COG5215 189 ETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALA 265 (858)
T ss_pred CchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999966211 1111111112 23334455677899999999999998865 33444455555555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccc-cc----hh------------hhhccCChHHHHHHhhcC-------ChhhH
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALIE-EN----KS------------SIGACGAIPPLVSLLIYG-------SSRGK 318 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~----~~------------~i~~~g~i~~Li~lL~~~-------~~~v~ 318 (464)
......+++++.++...+...-..++..+ +. +. .-.-...+|.|++||... +..+-
T Consensus 266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s 345 (858)
T COG5215 266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS 345 (858)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence 66677889999999999887776665421 11 10 001134789999999762 33466
Q ss_pred HHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH--hhHHHHHhcCcHHHHHHHHhcCC
Q 012413 319 KDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA--EGREAIVEENGIAALVEAIEDGS 396 (464)
Q Consensus 319 ~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~--~~~~~i~~~g~i~~Lv~lL~~~~ 396 (464)
..|..+|.-.+....+ ++++- ++.-+-.-++.++-.-++.|..+++.+...+ ..+..++ ..++|.+...+.++.
T Consensus 346 maA~sCLqlfaq~~gd--~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~ 421 (858)
T COG5215 346 MAASSCLQLFAQLKGD--KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC 421 (858)
T ss_pred hhHHHHHHHHHHHhhh--HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce
Confidence 6777776654442211 12221 2333333445666666888999999988543 3344444 467888999999888
Q ss_pred HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhh-hc--CCHHHHHHHHHHHHHhhcCCC
Q 012413 397 VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALS-QT--GSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 397 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~s--~~~~v~~~A~~aL~~L~~~~~ 457 (464)
-.++..++||++.|+.+- ...+-.+|-++..+..+ .. ++|.+..++.|...++.+|=.
T Consensus 422 l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 422 LWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred eehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 999999999999998642 22333345444444433 22 578999999999999988643
No 115
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.36 E-value=0.0035 Score=65.30 Aligned_cols=262 Identities=16% Similarity=0.095 Sum_probs=132.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
..+.|-.+|++.-.-|...+++.+..++..+- ...+. ..+|..|-.+|+++....|-.|.+.|..|+.-.+.+..++
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 45556677777778899999999998886641 11121 2456777788888989999999999999987432222111
Q ss_pred hc----------C--cHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccc-hhhhhcc-------------CChHHHHHHh
Q 012413 258 NA----------G--AIKSLVYVLKTGTETSKQNAACALMSLALI-EEN-KSSIGAC-------------GAIPPLVSLL 310 (464)
Q Consensus 258 ~~----------g--~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~-~~~i~~~-------------g~i~~Li~lL 310 (464)
.. . ..-++..+|+.+..+....-...+-++..+ +++ |-.++++ ..+..|...|
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L 421 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSL 421 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 11 1 122344455554443322222222221111 010 1000000 0111222222
Q ss_pred hc-CChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHH
Q 012413 311 IY-GSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAA 387 (464)
Q Consensus 311 ~~-~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~ 387 (464)
.+ +.-+.++.+..++..+.. .|+.++. ++..|..++.++.- .+-+..+|+-|... |.... -..-|..
T Consensus 422 ~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~---P~~yvrh 491 (898)
T COG5240 422 LQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY--HQITVRILGILGREGPRAKT---PGKYVRH 491 (898)
T ss_pred HhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCC---cchHHHH
Confidence 11 233344444444444433 2232222 22233333333221 11222222222210 00000 0002333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 388 LVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 388 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+.+-+--++..+|..|+.||..++-.. ...+....+...|.+.+.+.+++||..|..+|+++...
T Consensus 492 IyNR~iLEN~ivRsaAv~aLskf~ln~---~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 492 IYNRLILENNIVRSAAVQALSKFALNI---SDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhccCc---cccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 444444467789999999997776431 11233344567888899999999999999999998743
No 116
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.098 Score=58.55 Aligned_cols=310 Identities=16% Similarity=0.084 Sum_probs=177.4
Q ss_pred cchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCC
Q 012413 95 ISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPE 173 (464)
Q Consensus 95 ~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~ 173 (464)
+=|..++.|.+.+.| ++.+|=.|+..++|+++.... ++. +
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~La----------------------------d--------- 378 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--ELA----------------------------D--------- 378 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HHH----------------------------H---------
Confidence 346889999999999 999999999999998644331 110 1
Q ss_pred CchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCC--------HHHHHHHHHHHH
Q 012413 174 DLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSD--------PWTQEHSVTALL 244 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~--------~~v~~~A~~aL~ 244 (464)
.+|...++++.- .++..-..|+-+|..++...--.-..+ ..++|.++.-|..++ ..||..|+.++.
T Consensus 379 ---~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~W 453 (1133)
T KOG1943|consen 379 ---QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCW 453 (1133)
T ss_pred ---HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHH
Confidence 223333333332 234555688889988887633222222 146777777765533 468999999999
Q ss_pred HhcCC--CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc--------------------------hhh
Q 012413 245 NLSLH--ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN--------------------------KSS 296 (464)
Q Consensus 245 ~La~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~--------------------------~~~ 296 (464)
.+++. +..-+.+...=.-..|+..+-+.+..+|..|..|+-....-..+ +..
T Consensus 454 Af~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ 533 (1133)
T KOG1943|consen 454 AFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVS 533 (1133)
T ss_pred HHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHH
Confidence 98873 22222233322223445555677788899888888765432111 111
Q ss_pred hhc-cCChHHHHHHhhcC-----ChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 012413 297 IGA-CGAIPPLVSLLIYG-----SSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLL 369 (464)
Q Consensus 297 i~~-~g~i~~Li~lL~~~-----~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nL 369 (464)
+.+ .|...++++-|-.. +..++..++++|.+|+.. ++ ....+.+++++......+...+.-+..+.+.+
T Consensus 534 ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 534 IAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred HHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 222 34455666554432 788999999999998773 33 24556888888888777776666655555555
Q ss_pred hCCHhhHH----HHHh---cC---cHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC
Q 012413 370 AGIAEGRE----AIVE---EN---GIAALVEAIEDG--SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG 437 (464)
Q Consensus 370 a~~~~~~~----~i~~---~g---~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 437 (464)
...-.... .+.+ +| .++++...-... ..-++...+..+.++..........+.-++.-..+-..+...
T Consensus 610 ~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~ 689 (1133)
T KOG1943|consen 610 IGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP 689 (1133)
T ss_pred HHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch
Confidence 43211111 0111 11 122222221111 134455556666666655444444444444444444444233
Q ss_pred CHHHHHHHHHHHHHhh
Q 012413 438 SVRAKHKAETLLGYLR 453 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~ 453 (464)
+ -+|..|.++++.+.
T Consensus 690 n-~i~~~av~av~~l~ 704 (1133)
T KOG1943|consen 690 N-QIRDAAVSAVSDLV 704 (1133)
T ss_pred H-HHHHHHHHHHHHHH
Confidence 3 67777888877665
No 117
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.32 E-value=0.00053 Score=46.08 Aligned_cols=40 Identities=35% Similarity=0.457 Sum_probs=36.0
Q ss_pred chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 209 SDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 209 ~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
++++..+.+.|+++.|+++|++++++++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3467788899999999999999999999999999999873
No 118
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.31 E-value=0.0016 Score=68.11 Aligned_cols=216 Identities=13% Similarity=0.143 Sum_probs=144.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCC---CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchh-h
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLH---ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKS-S 296 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~-~ 296 (464)
|..++.+|++..|.++..|+...+.|+.- ...-+.+...|.| |.+-|...++++.-..+.|++.+...-..+. +
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 44556788899999999999999888742 1122233333333 5566677888888888888877654322111 1
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cc---hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQ---NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI 372 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~---~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 372 (464)
---.|.+|.|...|++....+..+....++.+|.. ++ .++-|. .-=.|+..|++.+.+++..|...++.++.
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~- 759 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISR- 759 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh-
Confidence 11267899999999999999999999999999984 33 233332 22357888888899999999999998885
Q ss_pred HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 373 AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+|.-+.++..|++-|+..+.+.|.....+++-.+..+ --..++|.|+.=...+...||.....++..+
T Consensus 760 -----aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c-------gpfsVlP~lm~dY~TPe~nVQnGvLkam~fm 827 (975)
T COG5181 760 -----AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC-------GPFSVLPTLMSDYETPEANVQNGVLKAMCFM 827 (975)
T ss_pred -----hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc-------CchhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence 3333456667777776655555554444444433211 0124566666666667778888888887765
Q ss_pred hc
Q 012413 453 RE 454 (464)
Q Consensus 453 ~~ 454 (464)
=+
T Consensus 828 Fe 829 (975)
T COG5181 828 FE 829 (975)
T ss_pred HH
Confidence 44
No 119
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.27 E-value=0.017 Score=52.72 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCc-HHHHHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGA-IKSLVYV 268 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~-i~~Lv~l 268 (464)
++.+|..++.+++.++...+.. ++ ..++.+..+|+++++.||..|+.+|..|....-.+. .|. +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 5789999999999998765432 22 578899999999999999999999999987543322 233 3778889
Q ss_pred HccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc
Q 012413 269 LKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 269 L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~ 312 (464)
+.+++++++..|..++..+..... ...+ ...++.++..|..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~-~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRN-PNII--YNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcc-chHH--HHHHHHHHHHHhC
Confidence 999999999999999999876521 1111 2235555555554
No 120
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.01 Score=63.35 Aligned_cols=240 Identities=16% Similarity=0.166 Sum_probs=157.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHHHhcCcHHH
Q 012413 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAIKS 264 (464)
Q Consensus 186 L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~ 264 (464)
+++.+..-.--|+..|..+... .. ..+.-+-++.+|.+..|.+|..|..+|..+.. .|+.-. ..+|.
T Consensus 118 l~S~n~ye~giAL~GLS~fvTp--dL-----ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~Fpr 185 (877)
T KOG1059|consen 118 LNSSNVYEVGLALSGLSCIVTP--DL-----ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPR 185 (877)
T ss_pred hccCccchhhheecccccccCc--hh-----hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHH
Confidence 3444433333455555444433 11 22455668899999999999999999998865 344322 36899
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcC
Q 012413 265 LVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAG 342 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g 342 (464)
|+.-|.++|+.++..|..+++.|+.. +.+--.+ -|.+.++|.+. |-=+....+...++|+--.+- ....
T Consensus 186 L~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKK 256 (877)
T KOG1059|consen 186 LVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKK 256 (877)
T ss_pred HHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhh
Confidence 99999999999999999999999865 4443222 46777887654 555777788888888774332 2233
Q ss_pred CHHHHHHhhcCCCH-HHHHHHHHHHH--HHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhH
Q 012413 343 AVRPLVGMLAGQGE-GMAEKAMVVLS--LLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR 418 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~-~v~~~A~~aL~--nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~ 418 (464)
.+++|.+++.+... .+..++..++- +|. +.+++-..+ .=+++.|-.++.+.++.++.-++.+++.++..++...
T Consensus 257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V 334 (877)
T KOG1059|consen 257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV 334 (877)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH
Confidence 67788888876432 22333332221 222 222221111 1256777777888899999999999999987666533
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..- -..++++|.+.++.+|-+|..+|..+.
T Consensus 335 qa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 335 QAH-----KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 321 356777888888888888888776654
No 121
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.01 Score=64.95 Aligned_cols=140 Identities=19% Similarity=0.145 Sum_probs=74.2
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+....+.+++...+.|.++|+-.=..|..+++.+|+.. + =+++.+.+=++++++.+|..|+++|+.+-..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~----- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK----- 122 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH-----
Confidence 33444555555555555555555555555555544221 1 1344555555666666666666666544211
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
.+ -...++++.+++.++++.||..|+.++.++ ..-.+..+.+.|.+..+..++.+.++.|..+|+.+|..
T Consensus 123 el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kl--y~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~ 192 (757)
T COG5096 123 EL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKL--YRLDKDLYHELGLIDILKELVADSDPIVIANALASLAE 192 (757)
T ss_pred HH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHH--HhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 11 112455566666666666666666666655 22234444555556666666666666666666666554
No 122
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.21 E-value=0.087 Score=49.81 Aligned_cols=179 Identities=14% Similarity=0.078 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhcccc--cchhhhhccCChH
Q 012413 232 DPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT-----GTETSKQNAACALMSLALIE--ENKSSIGACGAIP 304 (464)
Q Consensus 232 ~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~ 304 (464)
...-..+|...|..++.|++.|..+.++..--.|-.+|.. +.+.+|..++++++.|.+.+ +.-..+...+.+|
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3455678888888899999999999998765556666644 46789999999999999874 3445566789999
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhcCcchHH-------HHHH-cCCHH-HHHHhhcCCCHHHHHHHHHHHHHHhCCHhh
Q 012413 305 PLVSLLIYGSSRGKKDALTTLYKLCSLKQNKE-------RAVS-AGAVR-PLVGMLAGQGEGMAEKAMVVLSLLAGIAEG 375 (464)
Q Consensus 305 ~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-------~iv~-~g~v~-~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 375 (464)
..++.+..++...+.-|+.++..+..++.+.. +|.. ...+. .+..+.+.+...+..++..+.-+|+.++..
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999988765432 2221 11233 334455677788899999999999999988
Q ss_pred HHHHHh---cCcH-HHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 376 REAIVE---ENGI-AALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 376 ~~~i~~---~g~i-~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
+..+.. .+.- ...-.+++ +|+..+..-...+.+++
T Consensus 252 r~aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 252 RAALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhc
Confidence 777764 1111 12222333 34445555555555544
No 123
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.11 E-value=0.013 Score=64.37 Aligned_cols=268 Identities=15% Similarity=0.095 Sum_probs=156.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhc
Q 012413 181 ICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNA 259 (464)
Q Consensus 181 ~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~ 259 (464)
.|++.+.++|.+.|.-|..-|..=-+.....-+.=.+..++..|+++|++.+++|+..|..+|+-|+.. ++.+- .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l----e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL----E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH----H
Confidence 567778899999999888777433322222212222357789999999999999999999999998842 22110 1
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcC------ChhhHHHHHHHHHHHhc-C
Q 012413 260 GAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYG------SSRGKKDALTTLYKLCS-L 331 (464)
Q Consensus 260 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~------~~~v~~~A~~aL~nL~~-~ 331 (464)
..+..|..-+-++.+..|.-+.-.|...-.+ +...........++.+..-|... ...++-.++..++.+-. .
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 1334444444455566665555454432222 22222233344455555555432 34477777777666533 1
Q ss_pred cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 012413 332 KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQL 410 (464)
Q Consensus 332 ~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L 410 (464)
....-. ...+....++--+.+....++.+|+.+|+.++..-. ...-.+.+..|+.-|.. ..+..-.--+.+|+.+
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 111111 234455566666777788899999999999984211 01112334444444432 3444455556677777
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhh---hcCCHHHHHHHHHHHHHhhcCCC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALS---QTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL---~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
|.... .|-----...++.+.+.. ..+++++|+....++..+-...|
T Consensus 241 ~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 241 CRQAG-HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HHHhc-chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence 75321 111101135677777877 66788999999999998776444
No 124
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.10 E-value=0.003 Score=51.90 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhh--cCCCHHHHHHHHHHHHHHh-CCHhhHHHHHh
Q 012413 317 GKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGML--AGQGEGMAEKAMVVLSLLA-GIAEGREAIVE 381 (464)
Q Consensus 317 v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL--~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~ 381 (464)
++...+.+|+||+. ++.+++.+.+.|++|.++..- ++.++.+++.|..++.||+ +++++++.|.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 56788899999999 678999999999999999875 5667899999999999999 67888888876
No 125
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.08 E-value=0.02 Score=54.85 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHh-------hcCCC--H---HHHHHHHHHHHHhcCCCchHHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPL-------LKCSD--P---WTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~l-------L~~~~--~---~v~~~A~~aL~~La~~~~~~~~i 256 (464)
+++.|+.|+..|..--...+...-.+-. -|.+..|++= +..+. + .-..+|+..|..++.|++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677887777665444443444444443 4666666542 22221 2 33456666677789999999999
Q ss_pred HhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 257 TNAGAIKSLVYVLKTG-----TETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
.++...-.|...|+.. -+.+|..++++++.|.+. ++.-..+...+.+|..+..+..++.-.+..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9998877777777654 367999999999999985 355666778899999999999999999999999999988
Q ss_pred cCcchHHH-------HHH-cCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHH-----HHHHHhcC
Q 012413 330 SLKQNKER-------AVS-AGAVRPLVG-MLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAA-----LVEAIEDG 395 (464)
Q Consensus 330 ~~~~~~~~-------iv~-~g~v~~Lv~-lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~-----Lv~lL~~~ 395 (464)
.++.+... +.. ..++..++. +...+.+.+.++...+-..|+.++..+..+.. .+|. ....+-.+
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~--~LP~~Lrd~~f~~~l~~ 245 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ--CLPDQLRDGTFSNILKD 245 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH--HS-GGGTSSTTTTGGCS
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH--hCcHHHhcHHHHHHHhc
Confidence 87665433 222 223444443 44667788999999999999999988888764 1211 01111123
Q ss_pred CHHHHHHHHHHHHHH
Q 012413 396 SVKGKEFAVLTLLQL 410 (464)
Q Consensus 396 ~~~v~~~A~~aL~~L 410 (464)
|+.++..-...+.|+
T Consensus 246 D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 246 DPSTKRWLQQLLSNL 260 (262)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 566666655555554
No 126
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.06 E-value=0.012 Score=64.55 Aligned_cols=236 Identities=14% Similarity=0.084 Sum_probs=141.4
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh-cCCCch
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNL-SLHENN 252 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~L-a~~~~~ 252 (464)
...++++.+++.|.+.+.+|+-.|+++|+-++..-.+.+- + ..++.|..-+-+.....+..+.-.|... +.-++.
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l---e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~ 119 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL---E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS 119 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH---H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence 3378999999999999999999999999988855333221 1 2344555444444444454444444333 222322
Q ss_pred HHHHHhcCcHHHHHHHHcc------CCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHH
Q 012413 253 KTLITNAGAIKSLVYVLKT------GTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTL 325 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL 325 (464)
........+.+.+..-|.. +...++..++..+..+-.. .+.-.. ...+....++.-+.++...+|+.|+.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 2223333444444444433 3445777777777764322 111100 1223344444555566778999999999
Q ss_pred HHHhcCcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH---hcCCHHHHH
Q 012413 326 YKLCSLKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI---EDGSVKGKE 401 (464)
Q Consensus 326 ~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~v~~ 401 (464)
+.|+..-.. ..-.+.+..|+.-|... ......--..+|+.++.....+..-.-...++.+.+++ .+.++++++
T Consensus 199 ~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE 275 (1233)
T KOG1824|consen 199 GHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE 275 (1233)
T ss_pred HHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence 999873321 12223555566655443 33334455667777775444433333345789999999 678899999
Q ss_pred HHHHHHHHHhhcCHHh
Q 012413 402 FAVLTLLQLCAESVKN 417 (464)
Q Consensus 402 ~A~~aL~~L~~~~~~~ 417 (464)
.++.++..+....+..
T Consensus 276 ~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHHHHHhChhh
Confidence 9999999988765543
No 127
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.05 E-value=0.012 Score=64.25 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
-++..+.+-++++++.+|..|++.+..+--. .+ -..+++++.++++++++.||+.|+.++.++=. -.+..+
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l~~~------el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~ 162 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK------EL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLY 162 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhcChH------HH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhh
Confidence 4778888889999999999999999766433 22 23578999999999999999999999998853 334688
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSL 287 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 287 (464)
.+.|.+..+..++.+.++.+..+|..+|..+
T Consensus 163 ~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 163 HELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred hcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 8899999999999999999999999999997
No 128
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.03 Score=60.54 Aligned_cols=257 Identities=19% Similarity=0.154 Sum_probs=151.1
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCch--
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENN-- 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~-- 252 (464)
.+..+.+=.+|.+...-|..+|++++..+..-+.. .+ ..++..|-.++.++.+-+|-.|.++|..++. +|..
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---EL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 35667777788888899999999999888765432 12 2378888888999999999999999999986 3321
Q ss_pred ------HHHHHhcC---cHHHHHHHHccCCHHH----HHHHHHHHHHhcccccchhhhh-------------ccCChHHH
Q 012413 253 ------KTLITNAG---AIKSLVYVLKTGTETS----KQNAACALMSLALIEENKSSIG-------------ACGAIPPL 306 (464)
Q Consensus 253 ------~~~i~~~g---~i~~Lv~lL~~~~~~v----~~~a~~aL~~Ls~~~~~~~~i~-------------~~g~i~~L 306 (464)
-..|-+.+ +-.++..+|+.+.+.- .........+++. +.+-.++ ..+.+..|
T Consensus 319 ~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 319 VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 11222211 4456667777765543 3334444444432 2211111 12233444
Q ss_pred HHHhhcC-ChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcC
Q 012413 307 VSLLIYG-SSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEEN 383 (464)
Q Consensus 307 i~lL~~~-~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g 383 (464)
..+|+++ .-+.++....++..+.. .++.++. ++..|...+.++.- ..-+..+|+-|.. .+. ......
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~--~~i~~rILhlLG~EgP~---a~~Psk 466 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEF--TQIAVRILHLLGKEGPK---APNPSK 466 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccc--hHHHHHHHHHHhccCCC---CCCcch
Confidence 4444442 33455555555555544 3333222 44455555544321 2333344443331 000 000012
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
-+..+.+.+.-++..+|..|+.+|.+++..++..+ ..+...|.+.+.+.+.++|+.|..+|+.+.+
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 23444444445678899999999999996554322 3456677888888999999999999999983
No 129
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.98 E-value=0.033 Score=54.43 Aligned_cols=231 Identities=14% Similarity=0.008 Sum_probs=154.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH-hcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 180 KICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG-ESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 180 ~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~-~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
+.|-+.++.-++-.|.-|+++|.++... ++.|..+- +...-..++.+++. .+.++|...+-++.-++.+++..+.+
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi 230 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHH
Confidence 3333445556667888999999999887 55555544 34455667888877 56789999999999999988776444
Q ss_pred Hh-cCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccc--cchhhhhccCChHHHHHHhhcC---ChhhHHHHHHH-----
Q 012413 257 TN-AGAIKSLVYVLKTG-TETSKQNAACALMSLALIE--ENKSSIGACGAIPPLVSLLIYG---SSRGKKDALTT----- 324 (464)
Q Consensus 257 ~~-~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Li~lL~~~---~~~v~~~A~~a----- 324 (464)
-. ...+..|+++.+.. .+.+-+.+++.+.|++... +.-....-.|-+.+-+++|... +.+++...-.+
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 43 44677777777765 4567788899999987631 2222233345456666666542 44333221111
Q ss_pred ------------HHHH-----hcCc---------chHHHHHH--cCCHHHHHHhhcCCCHH-HHHHHHHHHHHHh-CCHh
Q 012413 325 ------------LYKL-----CSLK---------QNKERAVS--AGAVRPLVGMLAGQGEG-MAEKAMVVLSLLA-GIAE 374 (464)
Q Consensus 325 ------------L~nL-----~~~~---------~~~~~iv~--~g~v~~Lv~lL~~~~~~-v~~~A~~aL~nLa-~~~~ 374 (464)
+..| +-++ .|...+.+ -..+..|..+++...+. ...-|+.=+..+. ..|+
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 1111 1111 13334443 33678888888877666 3444566666666 6799
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
.+..+...|+=+.+++++.+++++++-.|+.++..+.
T Consensus 391 ~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 391 INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999987664
No 130
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.0093 Score=64.52 Aligned_cols=199 Identities=16% Similarity=0.134 Sum_probs=149.8
Q ss_pred CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHH-HhcccccchhhhhccCChHHHHHHhhcCCh-hhHHHHHHHHH
Q 012413 249 HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALM-SLALIEENKSSIGACGAIPPLVSLLIYGSS-RGKKDALTTLY 326 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~-~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~A~~aL~ 326 (464)
....+...+..|+...|+.+.....+..+.....+|. .+....+- ....++++...+..... .-...++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4555667788999999999999999999988888888 33222111 12345555555554322 22346888999
Q ss_pred HHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHH-HHHh-cCcHHHHHHHHhcCCHHHHHHH
Q 012413 327 KLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGRE-AIVE-ENGIAALVEAIEDGSVKGKEFA 403 (464)
Q Consensus 327 nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~i~~-~g~i~~Lv~lL~~~~~~v~~~A 403 (464)
||+.. ...++.++.+-+++.+-.++.++++..+..++..+.||..++...+ .+++ ....+....++..........+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 99994 4677888888788888888888899999999999999997776544 4455 4578888888888888889999
Q ss_pred HHHHHHHhhcCHHhHH-HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 404 VLTLLQLCAESVKNRG-LLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~~-~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
+.++..++...+..+. ...-..+.+.++.++.++++.+++......-++
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL 697 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence 9999988887776666 444467899999999999999998877665553
No 131
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.97 E-value=0.047 Score=49.81 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCC-hHHHHHH
Q 012413 232 DPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGA-IPPLVSL 309 (464)
Q Consensus 232 ~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~-i~~Li~l 309 (464)
+|.+|.+++.+++.|+.. +..- ...+|.+...|+++++.+|..|+.+|..|...+- +.-.|- +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHH
Confidence 578999999999999873 3322 2378899999999999999999999999865422 222333 4888899
Q ss_pred hhcCChhhHHHHHHHHHHHhcC
Q 012413 310 LIYGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 310 L~~~~~~v~~~A~~aL~nL~~~ 331 (464)
+.++++.++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 132
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.052 Score=58.80 Aligned_cols=246 Identities=17% Similarity=0.124 Sum_probs=157.4
Q ss_pred HHHhcCCCCHHHHHHHHHHH-HHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcC
Q 012413 182 CIDGLQSSSVAIKRSAAAKL-RLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAG 260 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L-~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g 260 (464)
|..+|.+.....+..|++-+ ..++++. . -....|.+++..-+.++++++-.-.-|...+....+-.. =
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~-d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----L 108 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK-D------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----L 108 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC-c------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----e
Confidence 35667776666777777665 4445552 2 234678888888899999998888777777764322111 1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHH
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAV 339 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv 339 (464)
-|..+-+-|+++++.+|..|+.+|..| |-.++..=.+-.+=++..+..+.||+.|+.|+-.|=. .++.+.+++
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~ 182 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE 182 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH
Confidence 466778899999999999998888886 2222111112222345567799999999999999977 455554433
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---CHH
Q 012413 340 SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE---SVK 416 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~ 416 (464)
..+-.+|.+..+.|...|+.+...+|-.. -.++ ++-...|++++.+-++.-|...+..|-.-|++ .|.
T Consensus 183 -----e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~ 253 (968)
T KOG1060|consen 183 -----EVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT 253 (968)
T ss_pred -----HHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence 45667788999999999998888887321 1111 34466677777776666666666666555542 110
Q ss_pred hHHHHHHc-C------------------------ChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 417 NRGLLVRE-G------------------------GIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 417 ~~~~i~~~-g------------------------~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.-....+. | .++...-++++.++.|...++.+...++
T Consensus 254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA 315 (968)
T KOG1060|consen 254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA 315 (968)
T ss_pred ccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC
Confidence 00000000 0 1233344567778888888888888776
No 133
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.94 E-value=0.02 Score=64.51 Aligned_cols=224 Identities=14% Similarity=0.040 Sum_probs=149.6
Q ss_pred hHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc----ccchh
Q 012413 221 VPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI----EENKS 295 (464)
Q Consensus 221 i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~----~~~~~ 295 (464)
++.+..++++ ...+.+..|+..|..++..-..-.+ -..++|.++.++.++...||..|+.+|..+-.. +..-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 6667777777 6678899999999999875322112 235899999999999999999999999886432 11222
Q ss_pred hhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcch----H--------------------------HHHHHcCCH
Q 012413 296 SIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQN----K--------------------------ERAVSAGAV 344 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~----~--------------------------~~iv~~g~v 344 (464)
.|...-.+|.|-.++.+ ....+|..-+..|+.|+..... . ++++ .++-
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~~V~ 580 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-HTVE 580 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-HHHH
Confidence 23333457777777777 4555776666667666553110 0 1111 1122
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcC----cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHH
Q 012413 345 RPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEEN----GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGL 420 (464)
Q Consensus 345 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g----~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 420 (464)
+..+.+|.++.+-|++.-+..|.-||. .+..++ .+..|+.+|++.+..+|..--..|..++..- ...
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V---G~r 651 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV---GWR 651 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE---eee
Confidence 344556666666777777777777774 233222 5788999999988888876666665544321 001
Q ss_pred HHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 421 LVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 421 i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
-++++.+|.|..-|.++.+.|-.+|.++|..|.+.+
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 135678888999999999999999999999887654
No 134
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.94 E-value=0.0046 Score=50.60 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCC
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGT 273 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~ 273 (464)
|..++.+|..++..-+....... ...+++++.++.+++.+||..|+.+|.++++.-.......-....+.|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 55667777666655333322222 36899999999999999999999999999875432222223557888999999999
Q ss_pred HHHHHHHHHHHHHh
Q 012413 274 ETSKQNAACALMSL 287 (464)
Q Consensus 274 ~~v~~~a~~aL~~L 287 (464)
+.||..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9988655 555444
No 135
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.078 Score=57.20 Aligned_cols=246 Identities=16% Similarity=0.181 Sum_probs=138.8
Q ss_pred HhhhcCC-CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHH
Q 012413 166 IIESISP-EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL-LKCSDPWTQEHSVTAL 243 (464)
Q Consensus 166 i~~~~~~-~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l-L~~~~~~v~~~A~~aL 243 (464)
+.+.+.+ +-+.|.+|.+..+|.+.+..||++|.-++..+-+..+. .+ .++-+.+-.. +...||..+++|...|
T Consensus 122 FLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pDapeLi~~fL~~e~DpsCkRNAFi~L 196 (948)
T KOG1058|consen 122 FLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PDAPELIESFLLTEQDPSCKRNAFLML 196 (948)
T ss_pred hhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CChHHHHHHHHHhccCchhHHHHHHHH
Confidence 3333433 44567888889999999999999999999888766221 11 1222223333 3446777777766554
Q ss_pred HHhc-------------C----CCchHHHHH-------------hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc
Q 012413 244 LNLS-------------L----HENNKTLIT-------------NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN 293 (464)
Q Consensus 244 ~~La-------------~----~~~~~~~i~-------------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~ 293 (464)
.... . ++..+-.|+ +...|..+..+|.+.++.++..|+.+|..|+.++..
T Consensus 197 ~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~a 276 (948)
T KOG1058|consen 197 FTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTA 276 (948)
T ss_pred HhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHH
Confidence 3331 1 011111111 122456666677777777777777777777665432
Q ss_pred hhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC
Q 012413 294 KSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI 372 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 372 (464)
-.. +...+++++... +-.++.-.+.-|..+.. ..+.+. .|.+-.++.+|..++-+++.+++.....|+.+
T Consensus 277 lk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~---~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 277 LKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA---LHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh---hhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 111 234455555432 33444444444444431 111111 23555667788888888999888887777642
Q ss_pred HhhHHHHHhcCcHHHHHHHHhc-----------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHH
Q 012413 373 AEGREAIVEENGIAALVEAIED-----------GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVR 440 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~ 440 (464)
.-+..++++|+- ....-|+.-+.++...+..-++.. +.+++.|++.+.+.++.
T Consensus 348 ----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 348 ----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEA 411 (948)
T ss_pred ----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHH
Confidence 223334444431 223446677777777665544422 34578888888887663
No 136
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.92 E-value=0.0069 Score=55.94 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=96.4
Q ss_pred cCChhhHHHHHHHHHHHhcCcchHHHHHH----------------cCCHHHHHHhhcC------CCHHHHHHHHHHHHHH
Q 012413 312 YGSSRGKKDALTTLYKLCSLKQNKERAVS----------------AGAVRPLVGMLAG------QGEGMAEKAMVVLSLL 369 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~~~~~~~iv~----------------~g~v~~Lv~lL~~------~~~~v~~~A~~aL~nL 369 (464)
+++......++-+|.||++.+..+..+++ ...+..|+.++.. ...+-..+.+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 44555677889999999998888776653 1256777777754 2244578899999999
Q ss_pred hCCHhhHHHHHhc--Cc--HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH--cCChHHHHHhhhcC
Q 012413 370 AGIAEGREAIVEE--NG--IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR--EGGIPPLVALSQTG 437 (464)
Q Consensus 370 a~~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~s~ 437 (464)
+..+++|..+.+. +. +..|+-++.+.+..-|.-++.+|.|.|.....+...+.+ .++++.|+--|..+
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 9999999999973 35 788888888888888899999999999776666555554 37777777777654
No 137
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.11 Score=55.78 Aligned_cols=236 Identities=16% Similarity=0.138 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cc-hHHHHHhcCcHHHHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-EN-NKTLITNAGAIKSLVY 267 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~-~~~~i~~~g~i~~Lv~ 267 (464)
...||..|+-+|..|-+.+|+. +-..+....++.+|.+.+..+...+...+-.|++. ++ .+..+- -++..|..
T Consensus 161 ~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs~L~r 235 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP--LAVSRLSR 235 (938)
T ss_pred hHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--HHHHHHHH
Confidence 4568888888888888776653 22346678899999998888888888888888874 32 222111 12222222
Q ss_pred HHcc-------------CCHHHHHHHHHHHHHhccccc--chhhhhccCChHHHHHHhhcC--Chh-----hHHHHHHHH
Q 012413 268 VLKT-------------GTETSKQNAACALMSLALIEE--NKSSIGACGAIPPLVSLLIYG--SSR-----GKKDALTTL 325 (464)
Q Consensus 268 lL~~-------------~~~~v~~~a~~aL~~Ls~~~~--~~~~i~~~g~i~~Li~lL~~~--~~~-----v~~~A~~aL 325 (464)
.... +.+=++...+..|.+.-..++ .+... ......++...+.+ +.. .+.+.+.-.
T Consensus 236 iv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFea 313 (938)
T KOG1077|consen 236 IVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (938)
T ss_pred HHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHH
Confidence 2211 345566777777766522111 11111 11112222222211 111 222222223
Q ss_pred HHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHH
Q 012413 326 YKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE-DGSVKGKEFA 403 (464)
Q Consensus 326 ~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A 403 (464)
.+|+. .+...+.+.. ++..|-.+|.+....+|.-|+.-++.|+........+-.. ...++..|+ +.+..+|+.|
T Consensus 314 I~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrra 389 (938)
T KOG1077|consen 314 ISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRA 389 (938)
T ss_pred HHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHH
Confidence 33443 2333344444 6778888999999999999999999999776666666555 778888898 7899999999
Q ss_pred HHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHH
Q 012413 404 VLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKH 443 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~ 443 (464)
+..|..+|.. ++...+ +.-|+..|.+.+..+|+
T Consensus 390 vDLLY~mcD~--~Nak~I-----V~elLqYL~tAd~sire 422 (938)
T KOG1077|consen 390 VDLLYAMCDV--SNAKQI-----VAELLQYLETADYSIRE 422 (938)
T ss_pred HHHHHHHhch--hhHHHH-----HHHHHHHHhhcchHHHH
Confidence 9999999953 344443 34455555555544443
No 138
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.85 E-value=0.07 Score=53.20 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=118.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHhhcCChhhHHHHHHHHHHHhcC---cchHH
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL---KQNKE 336 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~---~~~~~ 336 (464)
+...+..+.+.....|..++..+.++..+.-..+.+.+ ...+..+.+.++.+..+-+..|+.++.-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 44456666777788999999999887644222222221 23467777788887776677788888877764 24455
Q ss_pred HHHHcCCHHHHHHhhcCCCH--HHHHHHHHHHHHHhC---C-HhhHHHHHhcCcHH--HHHHHHhc----------CCHH
Q 012413 337 RAVSAGAVRPLVGMLAGQGE--GMAEKAMVVLSLLAG---I-AEGREAIVEENGIA--ALVEAIED----------GSVK 398 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~--~v~~~A~~aL~nLa~---~-~~~~~~i~~~g~i~--~Lv~lL~~----------~~~~ 398 (464)
.+++. ..|.|...+.+... .++..++.+|+-++. . .+...... ..+. ......+. +++.
T Consensus 125 ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 55553 78889999887653 445566666666552 1 11111000 1111 11111111 1356
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 399 GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+...|+.+-+-|...-+.....-.-...++.|..+|.+++.+||..|-++|..|-+...
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 77777777777765544422221123469999999999999999999999998866443
No 139
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.35 Score=54.89 Aligned_cols=222 Identities=16% Similarity=0.150 Sum_probs=136.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-c-cchhhhhccCChHH
Q 012413 230 CSDPWTQEHSVTALLNLSLHENNKTLITN--AGAIKSLVYVLKTGTETSKQNAACALMSLALI-E-ENKSSIGACGAIPP 305 (464)
Q Consensus 230 ~~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~-~~~~~i~~~g~i~~ 305 (464)
+.++.+|..+-.+|..++..+........ ......|..-+++.....+...+.+|..|-.. + +....+ ...||.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence 35789999999999999887544333222 22344555556666777777777777766433 2 222221 223555
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHhc----Ccch--H-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHH
Q 012413 306 LVSLLIYGSSRGKKDALTTLYKLCS----LKQN--K-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGRE 377 (464)
Q Consensus 306 Li~lL~~~~~~v~~~A~~aL~nL~~----~~~~--~-~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~ 377 (464)
++=.++..+...++.|..+|..|+. .... + ...++. .++.+...+..+...+....+-+++.+.. +...-.
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld 821 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILD 821 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555577799999999999999984 1111 1 111111 22333322222222222222444444442 222222
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 378 AIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 378 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
...-.+.+..+.-+|.+.+.++...|+..+..++..-++....--..-.++.+..+++...-.++.+....|..|.+
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 22223456666667778999999999999999998776665555555688999999988888999999988887754
No 140
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.72 E-value=0.36 Score=53.92 Aligned_cols=239 Identities=17% Similarity=0.116 Sum_probs=150.4
Q ss_pred HHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHc----cCC----HHHHHHHH
Q 012413 215 IGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLK----TGT----ETSKQNAA 281 (464)
Q Consensus 215 i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~v~~~a~ 281 (464)
+.+.|++..|+.++.+ ...+.....+..|...++-+.+|+.+.+.|+++.|+..|. .+. .++-+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 4468999999999876 2346677788888888888999999999999999998774 333 44555444
Q ss_pred HHHHHhccccc---c---hhhhh-------ccCChHHHHHHhhcC----ChhhHHHHHHHHHHHhcCcc-hHHHHHHcCC
Q 012413 282 CALMSLALIEE---N---KSSIG-------ACGAIPPLVSLLIYG----SSRGKKDALTTLYKLCSLKQ-NKERAVSAGA 343 (464)
Q Consensus 282 ~aL~~Ls~~~~---~---~~~i~-------~~g~i~~Li~lL~~~----~~~v~~~A~~aL~nL~~~~~-~~~~iv~~g~ 343 (464)
.++-.|..... . ..... +..-+..+++.+.+. ++.+....+++|-.|+...+ ..+.+++ -
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~ 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--H 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--H
Confidence 44444332211 1 11000 112256666666654 67888999999999999554 4444444 2
Q ss_pred HHHHHHhh--cCCCHHHHHHHHHHHHHHhCC-------HhhHHHHHhcCcHHHHHHHHhcC--------CHHHHH-----
Q 012413 344 VRPLVGML--AGQGEGMAEKAMVVLSLLAGI-------AEGREAIVEENGIAALVEAIEDG--------SVKGKE----- 401 (464)
Q Consensus 344 v~~Lv~lL--~~~~~~v~~~A~~aL~nLa~~-------~~~~~~i~~~g~i~~Lv~lL~~~--------~~~v~~----- 401 (464)
+.+.+++= +.....--..-+.+++.++.. ...++.+++.|++...+++|... +++.+.
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 22322221 111111112335666666531 34588999999999999999853 233333
Q ss_pred ---HHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCC
Q 012413 402 ---FAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 402 ---~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~~L~~~~ 456 (464)
.++..|.-|+...+..+.. ...++++.|..+=+.. ..++=..|.-+|..|++++
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 4777888888777666655 4456675555554443 4577778888888877754
No 141
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.71 E-value=0.12 Score=52.81 Aligned_cols=271 Identities=20% Similarity=0.139 Sum_probs=155.6
Q ss_pred chHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHH-HHhcCCCc
Q 012413 175 LQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTAL-LNLSLHEN 251 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL-~~La~~~~ 251 (464)
..+-|..+++.|.+ ....+|..++-.|..-+.+ +..+..+.+.|.++.++..+.. .+..+...++.++ .-++.+..
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 35677888888873 4567898998888888887 8888899999999999999955 3332444444444 44454555
Q ss_pred hHHHHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh---------cCChhh
Q 012413 252 NKTLITNAGAIKSLVYVLKTG-----TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI---------YGSSRG 317 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~---------~~~~~v 317 (464)
....+.+.+....++.++.-. .......-. .++++. . ...+..+-..+. .....-
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~lsk~---~-----~~~~~~~~~~~~~~~~~~~~~~~~lsp 166 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLSKV---Q-----QKSRSLCKELLSSGSSWKSPKPPELSP 166 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchhhhhh---hhhhHH---H-----HHHHHHHHHHHhccccccccCCccccc
Confidence 555555667777778888711 000000000 000000 0 000111111110 011122
Q ss_pred HHHHHHHHHHHh--------------c-CcchHHHHHHcCCHHHHHHhhcC----CC------------HHHHHHHHHHH
Q 012413 318 KKDALTTLYKLC--------------S-LKQNKERAVSAGAVRPLVGMLAG----QG------------EGMAEKAMVVL 366 (464)
Q Consensus 318 ~~~A~~aL~nL~--------------~-~~~~~~~iv~~g~v~~Lv~lL~~----~~------------~~v~~~A~~aL 366 (464)
+..|+.++-.++ . .+-.++.+...|++..++..+.+ .. ......++.+|
T Consensus 167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL 246 (361)
T PF07814_consen 167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL 246 (361)
T ss_pred ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence 333444444442 1 12246777888899999998862 11 11245577788
Q ss_pred HHHh-CCHhhHHHHHhc--CcH-HHHHHH---HhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc---
Q 012413 367 SLLA-GIAEGREAIVEE--NGI-AALVEA---IEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT--- 436 (464)
Q Consensus 367 ~nLa-~~~~~~~~i~~~--g~i-~~Lv~l---L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s--- 436 (464)
.+.+ .+.+++..+... +.. ..+..+ +..........+++.+.|++.+++..+..+...+....+..+...
T Consensus 247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~ 326 (361)
T PF07814_consen 247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFC 326 (361)
T ss_pred HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcc
Confidence 8877 456677776653 222 222222 223345557889999999999998877776665443333222211
Q ss_pred -----------CCHHHHHHHHHHHHHhhcCCC
Q 012413 437 -----------GSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 437 -----------~~~~v~~~A~~aL~~L~~~~~ 457 (464)
..-+..--+.++|-||+++..
T Consensus 327 ~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 327 VLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccccccccchHHHHHHHhHHHheeeCc
Confidence 112777788888888887654
No 142
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.67 E-value=0.014 Score=59.88 Aligned_cols=263 Identities=16% Similarity=0.072 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC------CchHHHHHhcCcHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH------ENNKTLITNAGAIK 263 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~------~~~~~~i~~~g~i~ 263 (464)
...+|.+|+++|..++.+-...+..+++ ....+...+.+.+|.++..++..|..+... |+..+.=...|.+-
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 3468999999999998874433333332 334445567778999999999999887431 22111101111010
Q ss_pred H------HHHHH-ccCCHHHHHHHHHHHHHhcccc-----cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC
Q 012413 264 S------LVYVL-KTGTETSKQNAACALMSLALIE-----ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 264 ~------Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~-----~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~ 331 (464)
. +-..+ .+..+..+..+|.++.+|...+ +.++.. .+-.+..+=.+.+.-++..|.++++-+.-+
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~----~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH 421 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTL----CITFLLGCNDSKNRLVKAAASRALGVYVLH 421 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhh----hHHHHhcccchHHHHHHHHHHhhceeEEec
Confidence 0 00111 1234567888899999987532 212111 111111122233455777888888888887
Q ss_pred cchHHHH-HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-----CHh--hHHHHHhcCcHHHHHHHHh---cCCHHHH
Q 012413 332 KQNKERA-VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-----IAE--GREAIVEENGIAALVEAIE---DGSVKGK 400 (464)
Q Consensus 332 ~~~~~~i-v~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-----~~~--~~~~i~~~g~i~~Lv~lL~---~~~~~v~ 400 (464)
+..+... .-+.+...+...|.+..-..+.+++|+++||+. .+. ....=+..-.+..+.+.-. ...++|+
T Consensus 422 p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~ 501 (728)
T KOG4535|consen 422 PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVK 501 (728)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 7654433 234566777777777778889999999999974 222 1111111112333333332 2468899
Q ss_pred HHHHHHHHHHhhcCHHh---HHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcCCCC
Q 012413 401 EFAVLTLLQLCAESVKN---RGLLVREGGIPPLVALSQ-TGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 401 ~~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
.+|.++|+|+...-... .......|.+..+....- ...-.||.+|+-+++||-+++.-
T Consensus 502 ~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 502 SNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred hHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 99999999998531100 001112233333333222 23569999999999999988754
No 143
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.64 E-value=0.1 Score=49.43 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCC--chHHHHHhcCcHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLHE--NNKTLITNAGAIKS 264 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~~--~~~~~i~~~g~i~~ 264 (464)
.-..+|+..|.-++.| ++.|..+.++..--.|-.+|.. ++..+|..++.+++.|.+.+ +....+...++||.
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3445777778888888 7788888887665555555543 56789999999999999854 44556678999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--------cCChHHH-HHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 265 LVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--------CGAIPPL-VSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--------~g~i~~L-i~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.++.+..+++..+..|..++..+-.++.+-..+.. ...+..+ ..+.+.+++.+.+.+.++..+|+.++..+
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999998777654332222 1122333 34445578899999999999999988777
Q ss_pred HHHH
Q 012413 336 ERAV 339 (464)
Q Consensus 336 ~~iv 339 (464)
..+.
T Consensus 253 ~aL~ 256 (293)
T KOG3036|consen 253 AALR 256 (293)
T ss_pred HHHH
Confidence 6654
No 144
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.63 E-value=0.056 Score=53.63 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=115.4
Q ss_pred HHHHHHH-HhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CC-chH
Q 012413 177 PTVKICI-DGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HE-NNK 253 (464)
Q Consensus 177 ~~v~~Lv-~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~-~~~ 253 (464)
+.+..|+ ..+++.++.+|+.|+++|+-++--+.+.. ...++.+...++.+++.++..|+.++..+.. +. +..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555555 67899999999999999999887654332 2457778888888899999999999999865 22 211
Q ss_pred HH-------HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC----ChhhHHHHH
Q 012413 254 TL-------ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG----SSRGKKDAL 322 (464)
Q Consensus 254 ~~-------i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~----~~~v~~~A~ 322 (464)
.. ......+..+.+.|.+.+++++..|+..++.|-....... ....+..|+-+--++ +..++..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 1224577788889999999999999999999865432211 133455554443332 445555555
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCC
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG 355 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~ 355 (464)
..+-..+......+..+.+..+|.+-.+.....
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 566666775543445555557777777775443
No 145
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.1 Score=56.03 Aligned_cols=259 Identities=12% Similarity=0.115 Sum_probs=154.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
++..+.+-|.+.|+....-|+.+++++..- +.++.+. .-|+ ++|.+ ..+-++..|+.+|..|-+. ++.
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 334444555677888888888888888653 2333322 2233 56665 3456899999999998774 442
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhc-------------CChhhHH
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIY-------------GSSRGKK 319 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~-------------~~~~v~~ 319 (464)
+-..+....++.+|.+.+..+...+...+-.|+.. ++.+..+.. ++..|...... +.|=+.-
T Consensus 183 -~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred -cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence 12245778889999888888888888777777765 233332211 11222222111 1334555
Q ss_pred HHHHHHHHHhcCc--chHHHHHHcCCHHHHHHhhcCCC--HHH-----HHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHH
Q 012413 320 DALTTLYKLCSLK--QNKERAVSAGAVRPLVGMLAGQG--EGM-----AEKAMVVLSLLAG-IAEGREAIVEENGIAALV 389 (464)
Q Consensus 320 ~A~~aL~nL~~~~--~~~~~iv~~g~v~~Lv~lL~~~~--~~v-----~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv 389 (464)
.++++|.+.-... ..+.++.+ ++..++...+++. ..+ +...+--.-+|+. .+..-+.+. .++..|.
T Consensus 260 Kl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg 335 (938)
T KOG1077|consen 260 KLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLG 335 (938)
T ss_pred HHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH
Confidence 6666666663322 23333332 3344444443211 111 2222222223332 122222222 3678888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcC
Q 012413 390 EAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQ-TGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 390 ~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~~L~~~ 455 (464)
++|.+....+|.-|...++.|+... ...+.+... .+.++..|+ ..+..+|++|...|-.+++-
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 9999999999999999999999753 344455444 788888898 56889999999999998874
No 146
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.55 E-value=0.1 Score=53.45 Aligned_cols=100 Identities=10% Similarity=0.140 Sum_probs=85.9
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-C---CCHHHHHHHHHHHHHhcC
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-C---SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~---~~~~v~~~A~~aL~~La~ 248 (464)
..+...+..+++.-....+.+-..|+..+..+..+.|..-..+.+.|.++.++..+. . +..++....-.+|+.||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 455666666666666677889999999999999999999999999999999999888 4 567888888899999999
Q ss_pred CCchHHHHHhcCcHHHHHHHHccC
Q 012413 249 HENNKTLITNAGAIKSLVYVLKTG 272 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL~~~ 272 (464)
|..+.+.+.+.+.++.+++++.++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999999999999888653
No 147
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.52 E-value=0.019 Score=46.95 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH--cCChHHHHHhhh
Q 012413 359 AEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR--EGGIPPLVALSQ 435 (464)
Q Consensus 359 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~ 435 (464)
+..++.+|..++. -+.. ..-.-...+++++.++.+++.++|..|+.+|.|++... +..+.. ..+.+.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence 4556677777662 2222 11112457999999999999999999999999998543 333333 467788899999
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 012413 436 TGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 436 s~~~~v~~~A~~aL~~L~ 453 (464)
+.++.||..|..+-+.|.
T Consensus 79 D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAAELLDRLLK 96 (97)
T ss_pred CCchhHHHHHHHHHHHhc
Confidence 999999998866555443
No 148
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.49 E-value=0.61 Score=46.98 Aligned_cols=205 Identities=10% Similarity=0.029 Sum_probs=152.1
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchh-hhhc--cCChHHHHHHhhc--CChhhHHHHHHHHHH
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKS-SIGA--CGAIPPLVSLLIY--GSSRGKKDALTTLYK 327 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~-~i~~--~g~i~~Li~lL~~--~~~~v~~~A~~aL~n 327 (464)
..+...+.+..|+..|..-+-+.|..++....++-... +.+. ..++ ..-.|.++..|-. +++++-..+-..|..
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 45567789999999999999999999999999987653 2322 1111 1222444444433 377888888889999
Q ss_pred HhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcC---cHHHHHHHHhcCCHHHHHHH
Q 012413 328 LCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEEN---GIAALVEAIEDGSVKGKEFA 403 (464)
Q Consensus 328 L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g---~i~~Lv~lL~~~~~~v~~~A 403 (464)
..+++.....+.....+..+...+..+.-++...|...+..+- .+......++... .+...-.+|.+++--.|..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 9999988888888888999999999999999999999999965 6776666666533 57788889999999999999
Q ss_pred HHHHHHHhhcCHHhH---HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCC
Q 012413 404 VLTLLQLCAESVKNR---GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~---~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
+..|+.|-....... ..+.+..-+..++.+|++.+..+|..|-...+.+..+|..
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 999999986533222 2344556688899999999999999999999999887754
No 149
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.48 E-value=0.078 Score=58.60 Aligned_cols=338 Identities=14% Similarity=0.059 Sum_probs=186.4
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccC---------chhh
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQREN---------FSTE 165 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~---------~s~~ 165 (464)
....++-+.++..| ...||-.+..++..+..+-....... ....|.+ +....+.. -.-+
T Consensus 274 ~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~--------~~~~~~l---~~~~~d~~~~v~~~~~~~~~~ 342 (759)
T KOG0211|consen 274 KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVV--------KSLTESL---VQAVEDGSWRVSYMVADKFSE 342 (759)
T ss_pred HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhh--------hhhhHHH---HHHhcChhHHHHHHHhhhhhh
Confidence 45566677777777 67778778887777755533321111 0122222 22222111 0112
Q ss_pred HhhhcCC-CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 012413 166 IIESISP-EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKN-RSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTAL 243 (464)
Q Consensus 166 i~~~~~~-~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL 243 (464)
....+.+ ......++.....++....+++.+.+.-...++.. +..++..+.....+|.+-.+..+.++.++...+...
T Consensus 343 L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~ 422 (759)
T KOG0211|consen 343 LSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVI 422 (759)
T ss_pred HHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccc
Confidence 2222332 12233566667777888888888877777666543 233344555666788888899999999999888887
Q ss_pred HHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHH
Q 012413 244 LNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDAL 322 (464)
Q Consensus 244 ~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~ 322 (464)
..++---. +.. .-....|.++..+++..+.++.+..+.+..+-.. +.........--+|.++.+-.+....++.+..
T Consensus 423 ~~~~p~~~-k~~-ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 423 TGLSPILP-KER-TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred cccCccCC-cCc-CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 77653211 000 0123567778888999999999999877655332 22222333344567777777766788888888
Q ss_pred HHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHH
Q 012413 323 TTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEF 402 (464)
Q Consensus 323 ~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 402 (464)
+.+..++.... ..+.+.-..+.+...+.+....++++|+..+..++..-. .+. .....++.++....+++-..|..
T Consensus 501 ~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t 576 (759)
T KOG0211|consen 501 EYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMT 576 (759)
T ss_pred HHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhH
Confidence 88888776443 222222233344444555556677777777777663111 111 11122344444443334444444
Q ss_pred HHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 403 AVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 403 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.+.++.-|+. ..-..+..+..++.+..+..+..++||-+++..|..+.
T Consensus 577 ~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 577 TLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 4444443331 11112233334555555555566666666665555443
No 150
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.48 E-value=0.067 Score=47.60 Aligned_cols=123 Identities=10% Similarity=0.123 Sum_probs=93.6
Q ss_pred hhhhccCChHHHHHHhhcCC------hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHH
Q 012413 295 SSIGACGAIPPLVSLLIYGS------SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ--GEGMAEKAMVVL 366 (464)
Q Consensus 295 ~~i~~~g~i~~Li~lL~~~~------~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~v~~~A~~aL 366 (464)
..+...+|+..|++++.++. ......++.++..|..+.-..=..+...-+..++.++... +..+...++..|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45677889999999999875 3677788999999887654222233344566677777543 477899999999
Q ss_pred HHHhCCHhh-HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh
Q 012413 367 SLLAGIAEG-REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN 417 (464)
Q Consensus 367 ~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~ 417 (464)
.+++.+... ...+.++=-++.|+.+|+..+.+++.+|...+-.|....++.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999965554 556666667999999999999999999999998888665443
No 151
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.47 E-value=0.066 Score=47.62 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=97.9
Q ss_pred HHHHHHcCCHHHHHHhhcCCC------HHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHH
Q 012413 335 KERAVSAGAVRPLVGMLAGQG------EGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG--SVKGKEFAVLT 406 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~------~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~a 406 (464)
...|+..||+..|+.++.+.. ......++.++..|..+....=..++...|..++.++... +..+.+.|...
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 356888999999999997755 3667778888888886544222455666788888888753 68899999999
Q ss_pred HHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 407 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
|-++...++.....+.++=-++.|+..|+.++++++.+|...+..|-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999998888888888989999999999999999999998887664
No 152
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.053 Score=58.36 Aligned_cols=135 Identities=15% Similarity=0.092 Sum_probs=92.1
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcC
Q 012413 306 LVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGM-LAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEEN 383 (464)
Q Consensus 306 Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~l-L~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g 383 (464)
+-+++.+.++-+|....-+++--=.... ..++|..|+.. +.+.+.+|++.|..+|+-++. .+ .
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~ 588 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------E 588 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh---------h
Confidence 3356666677777765554432111111 13467777777 678889999999999998884 33 3
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCCCC
Q 012413 384 GIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPSS 462 (464)
Q Consensus 384 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~~~ 462 (464)
.++..+++|. +.++.||.-|+.+|+--|... ..+. ++..|-.+..+...-||+.|..++.+|.-+..+..|+
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 4566777776 568999999999999888653 1222 2333444445667799999999999998877776664
No 153
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.42 E-value=0.19 Score=50.16 Aligned_cols=189 Identities=20% Similarity=0.230 Sum_probs=112.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc---ccchhhh
Q 012413 223 ALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN--AGAIKSLVYVLKTGTETSKQNAACALMSLALI---EENKSSI 297 (464)
Q Consensus 223 ~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~---~~~~~~i 297 (464)
-.+..+.+.....|..++..+.++..+......+.+ ...++.+.+.++.+..+-+..|+.++.-++.. .+....+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 344555556678888888888887654333333332 34678888889888776677777777776655 1233333
Q ss_pred hccCChHHHHHHhhcCC--hhhHHHHHHHHHHHhcC-cchHHHHHH-cCCHHHHH--HhhcCC----------CHHHHHH
Q 012413 298 GACGAIPPLVSLLIYGS--SRGKKDALTTLYKLCSL-KQNKERAVS-AGAVRPLV--GMLAGQ----------GEGMAEK 361 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~~~--~~v~~~A~~aL~nL~~~-~~~~~~iv~-~g~v~~Lv--~lL~~~----------~~~v~~~ 361 (464)
.+ ...|.|...+.+.. ..+|..++.+|+-++.. ...-..+.+ ...+..+. ..++.. .+.+...
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 33 45788888888763 45666677677766542 111111110 01222111 112211 2456666
Q ss_pred HHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 362 AMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 362 A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
|+.+-+-|.. -+...-.-.-...++.|+.+|.+.+..||..|..+|.-|.-
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6665555553 23221112224569999999999999999999999988753
No 154
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.11 Score=55.95 Aligned_cols=285 Identities=19% Similarity=0.158 Sum_probs=166.7
Q ss_pred hHHhhhcch-hhhhhhcccccCCCccccccCCC-Ccccc----chhhhhHHHhhhhhhhhccCCccc----------ccC
Q 012413 30 KIHRSIGRS-MRTIRSNLYQTDNSCSFVSVPDN-SGYLS----ENLTESVIDMRLGELASKTNDAKS----------VKS 93 (464)
Q Consensus 30 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 93 (464)
-|||+--.. |.-.+.-+=+....++. +-+. +-|+. -|-++.+.|-.+..|+..++|..- .-.
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~s~--y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEGSG--YKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMG 444 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCCCC--ccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcc
Confidence 467743333 55555444442222222 3322 23332 345666899999999999855432 445
Q ss_pred CcchhHHHHHHhhhhhcccchhhhH-HHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCC
Q 012413 94 TISEDDYLNVSQAFSDFSVCSSDIS-GELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISP 172 (464)
Q Consensus 94 ~~~e~~~~~L~~ll~~~~~~r~~a~-~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~ 172 (464)
+-+++..+.|...+-.+..+.-.|+ -++|.+--.....++ +++++.. +.+.-++.+.+-+..
T Consensus 445 Sa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~ea----------------iedm~~Y-a~ETQHeki~RGl~v 507 (929)
T KOG2062|consen 445 SANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEA----------------IEDMLTY-AQETQHEKIIRGLAV 507 (929)
T ss_pred cccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHH----------------HHHHHHH-hhhhhHHHHHHHHHH
Confidence 7789999999998887666655443 334433111111111 1111211 223334555554432
Q ss_pred ----------CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHH
Q 012413 173 ----------EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL-LKCSDPWTQEHSVT 241 (464)
Q Consensus 173 ----------~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l-L~~~~~~v~~~A~~ 241 (464)
++..+.| -+++.+.+|-.|...+..+..---. -...++|..|+.. ..+.+.+||+.|..
T Consensus 508 GiaL~~ygrqe~Ad~lI---~el~~dkdpilR~~Gm~t~alAy~G-------Tgnnkair~lLh~aVsD~nDDVrRaAVi 577 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLI---KELLRDKDPILRYGGMYTLALAYVG-------TGNNKAIRRLLHVAVSDVNDDVRRAAVI 577 (929)
T ss_pred hHHHHHhhhhhhhHHHH---HHHhcCCchhhhhhhHHHHHHHHhc-------cCchhhHHHhhcccccccchHHHHHHHH
Confidence 2222333 2455677888888887766322111 1145778888877 66688999999999
Q ss_pred HHHHhcCCCchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHH
Q 012413 242 ALLNLSLHENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKD 320 (464)
Q Consensus 242 aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~ 320 (464)
+|+-++..+. ...|..+.+|... ++.||.-++-+|+--|....++. +|..|-.|..++..-||.-
T Consensus 578 alGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQg 643 (929)
T KOG2062|consen 578 ALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQG 643 (929)
T ss_pred HheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHH
Confidence 9999876433 2567778888665 89999999999998877665554 3455555666777788888
Q ss_pred HHHHHHHHhc-C-cchHHHHHHcCCHHHHHHhhcCCCHHHH
Q 012413 321 ALTTLYKLCS-L-KQNKERAVSAGAVRPLVGMLAGQGEGMA 359 (464)
Q Consensus 321 A~~aL~nL~~-~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~ 359 (464)
|+-+++-+.. + +..+.++ .|..+.+.+++.+.+++..
T Consensus 644 AlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 644 ALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred HHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 8888877644 2 2222111 1233456666666655543
No 155
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.35 E-value=0.084 Score=53.12 Aligned_cols=196 Identities=12% Similarity=0.085 Sum_probs=147.0
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHH-----HHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRV-----LIGE--SGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~-----~i~~--~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
.+++..|+..|..-+-+.|..++.+..++.......+. .+.. ...+..|+.-. +++++-..+...|...++
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 36788889999999999999999999888877544432 2221 12233333333 567778888888999999
Q ss_pred CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHH-hcccccchhhhhcc---CChHHHHHHhhcCChhhHHHHHHH
Q 012413 249 HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMS-LALIEENKSSIGAC---GAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~i~~~---g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
++...+.+.....+..+....+.++-++..-|..++.. |..|.......... ..+...-.||.+++--++++++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 98888888888889899999999999999999999988 45555444444332 356677889999999999999999
Q ss_pred HHHHhcCcchHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 325 LYKLCSLKQNKERAVS----AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 325 L~nL~~~~~~~~~iv~----~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
|+.|-.++.|...+.. ..-+..++.+|++....++.+|..+..-...+|
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999988776543 446788899999999999999999999888654
No 156
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.32 E-value=0.011 Score=49.91 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=61.8
Q ss_pred hHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012413 176 QPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLS 247 (464)
Q Consensus 176 ~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La 247 (464)
-.+++.|++.|. +.++.+..-|+.=|+.++++.|..|..+.+.|+=..++.++.+++++|+..|+.++..+-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 468889999994 567888888999999999999999999888999999999999999999999999987653
No 157
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.38 Score=49.87 Aligned_cols=260 Identities=12% Similarity=-0.003 Sum_probs=146.3
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh----hcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL----LKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIK 263 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l----L~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~ 263 (464)
+..+..+..-...+..+.+... +-+.|.+.-++.. ..+++..++..|+..|++.+...+.+..=...-.+.
T Consensus 228 s~~~~~ritd~Af~ael~~~~~-----l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ld 302 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKRPKE-----LDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLD 302 (533)
T ss_pred hhcccchHHHHHHHHHHhCccc-----ccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHH
Confidence 3344445555555555555422 2234555444433 345777899999999999998733333323334566
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhh-hccCChHHHHHHhhcCChhhHHHHHHHHHHHhc--CcchHHHHH
Q 012413 264 SLVYVLKT-GTETSKQNAACALMSLALIEENKSSI-GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS--LKQNKERAV 339 (464)
Q Consensus 264 ~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i-~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~--~~~~~~~iv 339 (464)
.++.-|-+ .+.+|+..+..+|.-+.....+.+.- .-..+.-.+..+..+.++++|.+|..+++.|+. +...++.+.
T Consensus 303 aii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Ft 382 (533)
T KOG2032|consen 303 AIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFT 382 (533)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhH
Confidence 66665555 46889988888888765432222210 011223456678889999999999999999988 334455555
Q ss_pred H--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-----------H---hh----HHHHHhc------CcHHHHHHHH-
Q 012413 340 S--AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-----------A---EG----REAIVEE------NGIAALVEAI- 392 (464)
Q Consensus 340 ~--~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-----------~---~~----~~~i~~~------g~i~~Lv~lL- 392 (464)
+ .+...+++-.|.++.+.+.. |+......+.- + +. -+.+.+. ..-+.+..++
T Consensus 383 e~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~ 461 (533)
T KOG2032|consen 383 EQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLL 461 (533)
T ss_pred HHHHhccccceeeeCCCChHHHH-HHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 3 33445566666777665433 33333333221 1 00 0111111 1111122222
Q ss_pred -------hcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 393 -------EDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 393 -------~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
++..+.++..|...-.+..-+. +..+...-..-....|..+.+.+-++++..|..|+..+.
T Consensus 462 t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 462 TEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 2234566666666666655432 223333333345566777778889999999999998765
No 158
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.30 E-value=0.48 Score=48.60 Aligned_cols=99 Identities=10% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHh-cCChHHHHHhhcC---CCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHc-c---CCHHHHHHHHHHHH
Q 012413 215 IGE-SGAVPALVPLLKC---SDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLK-T---GTETSKQNAACALM 285 (464)
Q Consensus 215 i~~-~g~i~~Ll~lL~~---~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~-~---~~~~v~~~a~~aL~ 285 (464)
+.+ ......|...+++ .-+.+-..|+.++..+..+ |-.-..+.+.|.++.+++.+. . ++.++....-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 344 3445556666666 4578999999999999986 455677889999999999988 4 36788888899999
Q ss_pred HhcccccchhhhhccCChHHHHHHhhcC
Q 012413 286 SLALIEENKSSIGACGAIPPLVSLLIYG 313 (464)
Q Consensus 286 ~Ls~~~~~~~~i~~~g~i~~Li~lL~~~ 313 (464)
.||.+..+.+.+.+.+.++.+++.+.++
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 9999999999999999999999988764
No 159
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.24 E-value=0.0078 Score=61.58 Aligned_cols=190 Identities=15% Similarity=0.032 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVL-IGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~-i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
+.+.-++.+|.+++.-+.-| +-.|.. ..-..+...++..|.+.....|.+++|+++||+.
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITd------------------ 462 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITD------------------ 462 (728)
T ss_pred hHHHHHHHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHH------------------
Confidence 34445666677776666655 322222 2223445555556666566677777777777641
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh---hcCChhhHHHHHHHHHHHhcCcc----hHHHHH
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL---IYGSSRGKKDALTTLYKLCSLKQ----NKERAV 339 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL---~~~~~~v~~~A~~aL~nL~~~~~----~~~~iv 339 (464)
.|..+.+.++..++.+.+-+ +..++++- .-.+..|+.++.++|+|+...-+ ......
T Consensus 463 -AL~~~~Ps~~s~~eR~sg~l---------------l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~ 526 (728)
T KOG4535|consen 463 -ALIVNMPTPDSFQERFSGLL---------------LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEI 526 (728)
T ss_pred -HHHcCCCCchHHHHHHHHHH---------------HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHH
Confidence 11111122222222222221 11122111 11245677788888888765211 111112
Q ss_pred HcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhCCHhhHH--HHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhh
Q 012413 340 SAGAVRPLVGM-LAGQGEGMAEKAMVVLSLLAGIAEGRE--AIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 340 ~~g~v~~Lv~l-L~~~~~~v~~~A~~aL~nLa~~~~~~~--~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~ 412 (464)
..|.+..++.. .......|+.+|+.+++||-.++...- .=....+.+.|..++.+ .+.++|.+|+.+|..-+.
T Consensus 527 ~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 527 IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 22233333222 233456789999999999998765311 11122367888888875 678999999999977654
No 160
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.41 Score=51.66 Aligned_cols=129 Identities=15% Similarity=0.138 Sum_probs=90.2
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+.+.+..+++...+.+..||...+..|..+.....+.-+.+ -.+....+..-|.+..|.||..|+.+|+.+-.++..-
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 35788888999999999999999999999988644333333 3366777777788889999999999999997543210
Q ss_pred HHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHH
Q 012413 255 LITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKD 320 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~ 320 (464)
+..++..+..+++. ++++||..|+ .+|+.+ ....|.+++..++-+...|+.
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaL---snI~vd---------nsTlp~IveRarDV~~anRrl 212 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVD---------NSTLPCIVERARDVSGANRRL 212 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHH---HhhccC---------cccchhHHHHhhhhhHHHHHH
Confidence 23466777788865 6889998754 455433 334555555555555444443
No 161
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.21 E-value=0.064 Score=51.40 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-----DPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKS 264 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~-----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~ 264 (464)
.-..+|+..|..+|.| ++.|..+.++...-.|...|+.. ...+|...+.+++.|.+. ++....+...+.+|.
T Consensus 65 nRVcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 3445677788888887 88899999988887788888653 357899999999999984 456667778999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--------cCChHHHHH-HhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 265 LVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--------CGAIPPLVS-LLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--------~g~i~~Li~-lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
.++.+..+++-.|..|...+..+-.++.+-..+.. ..++..++. +..++++.+.+...++-..|+.++..+
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar 223 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR 223 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence 99999999999999999999998777655333322 123334443 345579999999999999999999988
Q ss_pred HHHHH
Q 012413 336 ERAVS 340 (464)
Q Consensus 336 ~~iv~ 340 (464)
+.+..
T Consensus 224 ~aL~~ 228 (262)
T PF04078_consen 224 EALRQ 228 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 162
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.06 E-value=0.036 Score=51.22 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHh----------------cCcHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 012413 231 SDPWTQEHSVTALLNLSLHENNKTLITN----------------AGAIKSLVYVLKT------GTETSKQNAACALMSLA 288 (464)
Q Consensus 231 ~~~~v~~~A~~aL~~La~~~~~~~~i~~----------------~g~i~~Lv~lL~~------~~~~v~~~a~~aL~~Ls 288 (464)
++......++..|.||++.+.....+.+ ..++..|+.++.. ...+-....+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3444566788899999988777664443 2256777777766 23455678899999999
Q ss_pred ccccchhhhhcc--CC--hHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHc---CCHHHHHHhhc
Q 012413 289 LIEENKSSIGAC--GA--IPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSA---GAVRPLVGMLA 352 (464)
Q Consensus 289 ~~~~~~~~i~~~--g~--i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~---g~v~~Lv~lL~ 352 (464)
..+++|..+.+. +. +..|+..+.+.+..-|.-++++|.|.|-..+....+... +.+|.|+--|.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999999873 34 677777777787777778999999999988877777653 45555555554
No 163
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.01 E-value=0.22 Score=51.87 Aligned_cols=191 Identities=14% Similarity=0.088 Sum_probs=120.1
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchhh
Q 012413 220 AVPALVPLLKC-SDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 220 ~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
.+..++.+..+ .++..+..++.+++.+... ++.. . . ...+..+...+ ...+...+..+..++..+++.--.|..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~-l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-D-L-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-h-H-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 45555555444 5688888888888888753 1111 0 0 12233333333 233444555555555444322111111
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cch-------------HHHHHHcCCHHHHHHhhcCCCHHHHHHH
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQN-------------KERAVSAGAVRPLVGMLAGQGEGMAEKA 362 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~-------------~~~iv~~g~v~~Lv~lL~~~~~~v~~~A 362 (464)
-.....+..|+++|.+ +.+...++.++.-|... ++. ++++... .+|.|++..+..+...+...
T Consensus 267 ~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 267 PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHH
Confidence 1112235677777776 67788888998888876 331 2334333 78888888888777788889
Q ss_pred HHHHHHHhCCHhhHHHHHh-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 363 MVVLSLLAGIAEGREAIVE-ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 363 ~~aL~nLa~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
+.+|.+|..+-+..-.+-+ ...+|.|++.|..++.+++..++.+|..+..+.++
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 9999999975443323333 45899999999999999999999999999977643
No 164
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.47 Score=52.95 Aligned_cols=286 Identities=14% Similarity=0.057 Sum_probs=166.2
Q ss_pred CCCchHHHHHHHHhcC------C--CCHHHHHHHHHHHHHHhcc---CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 012413 172 PEDLQPTVKICIDGLQ------S--SSVAIKRSAAAKLRLLAKN---RSDNRVLIGESGAVPALVPLLKCSDPWTQEHSV 240 (464)
Q Consensus 172 ~~~~~~~v~~Lv~~L~------s--~~~~vr~~A~~~L~~La~~---~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~ 240 (464)
.+..++.++.+++-|. . .++.-+..|+.+++.++.- ....+ ..++.=.++.+...++++---+|..||
T Consensus 405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac 483 (1010)
T KOG1991|consen 405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARAC 483 (1010)
T ss_pred hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHH
Confidence 3455678888887776 2 3566777788888888721 11111 122334466667778888889999999
Q ss_pred HHHHHhcCCC-chHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhccccc-chhhhhc--cCChHHHHHHhhcCCh
Q 012413 241 TALLNLSLHE-NNKTLITNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEE-NKSSIGA--CGAIPPLVSLLIYGSS 315 (464)
Q Consensus 241 ~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~--~g~i~~Li~lL~~~~~ 315 (464)
|++..++.-+ .....+ ..++....+.|. +.+-.|+..|+.||..+-.+.+ ....+.. .+.+..|+.+.+..+.
T Consensus 484 ~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En 561 (1010)
T KOG1991|consen 484 WVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN 561 (1010)
T ss_pred HHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch
Confidence 9999998421 221221 236677777777 7778999999999998776643 3333322 3344455555554433
Q ss_pred hhHHHHHHH-HHHHhc-CcchHHHHHHcCCHHHHHHhhcC---CCHHH---HHHHHHHHHHHhC---CHhhHHHHH-h--
Q 012413 316 RGKKDALTT-LYKLCS-LKQNKERAVSAGAVRPLVGMLAG---QGEGM---AEKAMVVLSLLAG---IAEGREAIV-E-- 381 (464)
Q Consensus 316 ~v~~~A~~a-L~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~---~~~~v---~~~A~~aL~nLa~---~~~~~~~i~-~-- 381 (464)
+.....+.. ++..+. -.+....+. ........+++.. .++.. ...|+++|..+.. .-++...+. +
T Consensus 562 d~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le 640 (1010)
T KOG1991|consen 562 DDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLE 640 (1010)
T ss_pred hHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 333322222 222211 001111111 1133344455542 22223 3444555554432 122333332 2
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCCCC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEGPS 461 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~~~ 461 (464)
.-..+.+-..+++.-.++-+.+...+..++...++....+|+ ..+.+.+.++...-+--....-+|.++.-++...=.
T Consensus 641 ~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~ 718 (1010)
T KOG1991|consen 641 PIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL 718 (1010)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh
Confidence 335666666677777889999999999988877665556654 677777777777766677777777777766665444
Q ss_pred CC
Q 012413 462 SS 463 (464)
Q Consensus 462 ~~ 463 (464)
++
T Consensus 719 s~ 720 (1010)
T KOG1991|consen 719 SN 720 (1010)
T ss_pred cc
Confidence 43
No 165
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.41 Score=51.60 Aligned_cols=104 Identities=18% Similarity=0.103 Sum_probs=76.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
|.+..|+.-.++.+..||...+..|..+..........+-.+....+..-|.+..+.||.+|..+|..+-.++.. -
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----e 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----E 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----C
Confidence 667777777888999999999999998886433333334456677788888888999999999999998643211 1
Q ss_pred ccCChHHHHHHhhc-CChhhHHHHHHHHH
Q 012413 299 ACGAIPPLVSLLIY-GSSRGKKDALTTLY 326 (464)
Q Consensus 299 ~~g~i~~Li~lL~~-~~~~v~~~A~~aL~ 326 (464)
+..+...+..++++ ++++||+.|+..+.
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 13356777788775 58999998876544
No 166
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.82 E-value=0.16 Score=48.90 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc
Q 012413 359 AEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 359 ~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
...|+.+|--++ -++..+..+.+..++..|+.+|. ...+.++..++.+|..+..+++.+...+.+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 555777888888 68999999999999999999995 5679999999999999999999999999999999999999988
Q ss_pred C--CHHHHHHHHHHHHHhhc
Q 012413 437 G--SVRAKHKAETLLGYLRE 454 (464)
Q Consensus 437 ~--~~~v~~~A~~aL~~L~~ 454 (464)
. +.++|.+..+-|...--
T Consensus 188 ~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccHHHhHHHHHHHHHHHc
Confidence 6 56999998888776543
No 167
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.75 E-value=0.17 Score=55.93 Aligned_cols=269 Identities=16% Similarity=0.116 Sum_probs=171.6
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGL-QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L-~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.-+......+ ++..+.||..++.-++++++--+. .....+.++.+.++..++...++..|...+.++...-+...
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~- 311 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD- 311 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-
Confidence 3344444444 456788999999999998876333 56678999999999999989999999998888865311110
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC--cc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL--KQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~--~~ 333 (464)
=...-..+.++....+++..++...+.....|...=+- ......-+++...++++....++.+++.-...++.. .+
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 12234778899999999999998888888877543111 233344577888888888888888877777777663 23
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
....+.....+|.+..++.+....++...+..+.++.- .+. .. .-.-..+.++..+++..+.++.+-.+.+..+-.
T Consensus 390 ~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~-ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~ 466 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ER-TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE 466 (759)
T ss_pred cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--Cc-CccccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence 44555666678999999988888888877777766642 110 00 001234555555566666666666665544433
Q ss_pred cCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 413 ESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 413 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..+...........++.+..+-.....+++....+.+..++.
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 333333333344445555555544445555555555554443
No 168
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.72 E-value=0.024 Score=47.91 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=62.1
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+..|+++|. +.++.+..-|+.=|+.++.+-|..+..+.+.|+-..+++++.+++++||..|..++..+.-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6889999994 5578888999999999999999999999999999999999999999999999999987754
No 169
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.37 Score=52.96 Aligned_cols=219 Identities=14% Similarity=0.078 Sum_probs=139.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCCh
Q 012413 224 LVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAI 303 (464)
Q Consensus 224 Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i 303 (464)
-+..+.++.+.++..++.-|..+....+-+..+...+.+...+..|++.++.+=.+|...+..||.. .....+
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il 804 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDIL 804 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhH
Confidence 3444555667789999999999998777777888899999999999999999999999877777543 445567
Q ss_pred HHHHHHhhcC----ChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh--hH
Q 012413 304 PPLVSLLIYG----SSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--GR 376 (464)
Q Consensus 304 ~~Li~lL~~~----~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~--~~ 376 (464)
|.|.+--.+. .++.+...-.++.++.. -.+......+ -.+...+..+++++...+.-++..+++||..-. ..
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence 8777743322 23445555567777655 2333333333 244555566677777779999999999985322 11
Q ss_pred HHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc---CChHHHHHhhhcC-CHHHHHHHHHHHHH
Q 012413 377 EAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVRE---GGIPPLVALSQTG-SVRAKHKAETLLGY 451 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~---g~i~~Lv~lL~s~-~~~v~~~A~~aL~~ 451 (464)
..+. .++.-++.+.+ +++..+|+.|+..+..+-......-..+... .....+....+.. ++.++..|..++..
T Consensus 884 d~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 884 DFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 2222 23444555554 6788999999999998876432211112111 2223333333333 45677777766654
Q ss_pred h
Q 012413 452 L 452 (464)
Q Consensus 452 L 452 (464)
+
T Consensus 962 i 962 (982)
T KOG4653|consen 962 I 962 (982)
T ss_pred H
Confidence 4
No 170
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.55 E-value=0.52 Score=50.36 Aligned_cols=131 Identities=24% Similarity=0.233 Sum_probs=87.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHH
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLIT 257 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~ 257 (464)
-..++..-+ .+..++.-|+..+....++=|.+.+ .++..++.|.++++..||..|...|-.+|++ ++....
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 333444444 5788999999999999998777655 4788899999999999999999999999986 555555
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh---cCChhhHHHHHHHHHH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI---YGSSRGKKDALTTLYK 327 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~---~~~~~v~~~A~~aL~n 327 (464)
.+..|+++|+++++.-...+-.+|..|-..+ ..+.+..|+.-+. .++..+|..++..|..
T Consensus 97 ---vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 97 ---VADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ---HHHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 4567999999998776666666666653221 1334555665555 5677788888877643
No 171
>PRK14707 hypothetical protein; Provisional
Probab=95.47 E-value=2.7 Score=50.88 Aligned_cols=336 Identities=13% Similarity=0.032 Sum_probs=185.7
Q ss_pred cccccCCcchhHHHHHHhhhhh-cc----cchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCc
Q 012413 88 AKSVKSTISEDDYLNVSQAFSD-FS----VCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF 162 (464)
Q Consensus 88 ~~~~~~~~~e~~~~~L~~ll~~-~~----~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~ 162 (464)
||.+.++-.|+++.++..-+-. .. +--.+.+..|+-.+..|+...+-..+ ..+ ...+..++
T Consensus 131 sk~~~~~~c~~a~a~i~~~~~~~~~~~~~l~~~~~~lllNafSKw~~~~~c~~aa----------~~l---a~~~~~~d- 196 (2710)
T PRK14707 131 SKNLDSGRCERAVARLARHLRREDKARQTLNAQNISLALNAFSKWSDNPDCQAVA----------PRF---AALVASDD- 196 (2710)
T ss_pred hcCCCchHHHHHHHHHHHHhccccchhhhhccccHHHHHHHhhcCCCCchHHHHH----------HHH---HHHhcCCh-
Confidence 4455555566666666554421 11 22234555555555555555443311 111 22222221
Q ss_pred hhhHhhhcCCCCchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CC-HHHHHHH
Q 012413 163 STEIIESISPEDLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SD-PWTQEHS 239 (464)
Q Consensus 163 s~~i~~~~~~~~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~-~~v~~~A 239 (464)
..++.+. ...|..++..++. ++..-...|+..|.....+....+..+ +...|-..++.|.. ++ +.....+
T Consensus 197 --~~~~~~~----~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~ 269 (2710)
T PRK14707 197 --RLRSAMD----AQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADTPVCAAAA 269 (2710)
T ss_pred --hhhcccc----hHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHH
Confidence 2333332 2344444555543 443444455666644433436666555 44445555555554 44 4555555
Q ss_pred HHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHH-hcccccchhhhhccCChHHHHHHhhc-CChhh
Q 012413 240 VTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMS-LALIEENKSSIGACGAIPPLVSLLIY-GSSRG 317 (464)
Q Consensus 240 ~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v 317 (464)
..+=..++.++..++.+-..+.-..|-.+-+=++..+-..|+..|.. |..+++.++.+ +.-.+..+++-|.. ++..+
T Consensus 270 ~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~ 348 (2710)
T PRK14707 270 SALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPV 348 (2710)
T ss_pred HHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchh
Confidence 55556677666666665544444444444455677777777666654 55555555433 33345555555554 44444
Q ss_pred HH-HHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHH-HhCCHhhHHHHHhcCcHHHHHHHHhcC
Q 012413 318 KK-DALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSL-LAGIAEGREAIVEENGIAALVEAIEDG 395 (464)
Q Consensus 318 ~~-~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~i~~Lv~lL~~~ 395 (464)
.+ .|...-..|+.+++.++.+--.|+-..|-.+-+-++..+-..|+..|.. |....+.++.+-..|+-..|=-+-+=+
T Consensus 349 C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWP 428 (2710)
T PRK14707 349 CAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWP 428 (2710)
T ss_pred HHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCC
Confidence 44 4444445566666666665545444444444466777776666665554 446677777776666555554444557
Q ss_pred CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHH
Q 012413 396 SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKA 445 (464)
Q Consensus 396 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A 445 (464)
+..+...++..|..-..++.+.+..+--.++...|-.+.+=++..+-..|
T Consensus 429 d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a 478 (2710)
T PRK14707 429 DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT 478 (2710)
T ss_pred cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence 88899999999988888888888877767766666666665654444333
No 172
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.31 E-value=0.092 Score=40.46 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCHhhHHHHHhcC
Q 012413 318 KKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIAEGREAIVEEN 383 (464)
Q Consensus 318 ~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g 383 (464)
++.|++++++++..+.....+.+.+.++.++++... +-..+|--|..+|+-++...++++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 578999999999999888888888999999999864 446789999999999999999998888766
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.21 E-value=0.48 Score=46.96 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=111.5
Q ss_pred CChHHHH-HhhcCCCHHHHHHHHHHHHHhcCCCc-hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc--cch
Q 012413 219 GAVPALV-PLLKCSDPWTQEHSVTALLNLSLHEN-NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE--ENK 294 (464)
Q Consensus 219 g~i~~Ll-~lL~~~~~~v~~~A~~aL~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~--~~~ 294 (464)
+.+..|+ +.+++.++.+|+.|..+|+-.+.-+. .. ...++.+...++.++..++..|+.++..+.... +.-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4454444 78899999999999999999887432 21 235778888888889999999999999977531 111
Q ss_pred h-------hhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCC----CHHHHHHHH
Q 012413 295 S-------SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ----GEGMAEKAM 363 (464)
Q Consensus 295 ~-------~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~----~~~v~~~A~ 363 (464)
. .......+..+.+.+.+.+++++..|+..++.|.-+..... ....+..|+-+-.++ +..++.--.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 11223456677788888899999999999999876543221 122333443333222 345566556
Q ss_pred HHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc
Q 012413 364 VVLSLLAGIAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 364 ~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
..+-..+......+..+....++.+-.+.+.
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 6677777554444455556777777777764
No 174
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.73 Score=50.78 Aligned_cols=221 Identities=17% Similarity=0.147 Sum_probs=135.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN 258 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~ 258 (464)
...-+..+.++.+.+|-.|+..|+.+..+. +....+...+++...+..|++.|+.+-.+|...+..|+.- ..
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cc
Confidence 334455667788889999999999999875 4445666789999999999999999999999977777642 22
Q ss_pred cCcHHHHHHHHccC----CHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 259 AGAIKSLVYVLKTG----TETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~----~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
...+|.|..--.+. ..+.+...-.++.++... .+......+ -.+...+..+++++...|..++..+++||.-..
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 34666666633221 123444444566555332 111111100 123333444556677789999999999988322
Q ss_pred --hHHHHHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhC-CHhhHHHHHh---cCcHHHHHHHHhc-CCHHHHHHHHH
Q 012413 334 --NKERAVSAGAVRPLVGMLAGQG-EGMAEKAMVVLSLLAG-IAEGREAIVE---ENGIAALVEAIED-GSVKGKEFAVL 405 (464)
Q Consensus 334 --~~~~iv~~g~v~~Lv~lL~~~~-~~v~~~A~~aL~nLa~-~~~~~~~i~~---~g~i~~Lv~lL~~-~~~~v~~~A~~ 405 (464)
..+.+.+ .+..++.+.+.++ ..+++.|+..+..+-. ..+..-.|.+ -+....+..+... .++.++..|..
T Consensus 880 ~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 880 FQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 2233333 5666666666544 5678888888888763 2322222222 2344555555553 45667777777
Q ss_pred HHHHH
Q 012413 406 TLLQL 410 (464)
Q Consensus 406 aL~~L 410 (464)
++-.+
T Consensus 958 ~leei 962 (982)
T KOG4653|consen 958 CLEEI 962 (982)
T ss_pred HHHHH
Confidence 76554
No 175
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.42 Score=53.54 Aligned_cols=258 Identities=18% Similarity=0.161 Sum_probs=164.3
Q ss_pred HHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCC---
Q 012413 197 AAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGT--- 273 (464)
Q Consensus 197 A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~--- 273 (464)
...+|..+-+++.++...+.++.++..++..+-++ +-|...+..+..|...+.- + +....+-.|+..|+++-
T Consensus 662 gwDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpk-q--vhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPK-Q--VHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcc-c--ccHHHHHHHHHHHHhcceec
Confidence 35678888899999999999999999998888443 3455555666555442211 0 12335667888888731
Q ss_pred ---------HHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhc----------CChhhHHHHHHHHHHH-----
Q 012413 274 ---------ETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIY----------GSSRGKKDALTTLYKL----- 328 (464)
Q Consensus 274 ---------~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~----------~~~~v~~~A~~aL~nL----- 328 (464)
..+.....++++.+... ...+..+.++|++..|...|.. .+..+-..-...|..+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 23455667777776543 4567788899999999888753 1222222333333322
Q ss_pred hcCcchHHHH-------------HHcC---------CHHHHHHh----hcCCCHHHHHHHHHHHHHHhC-----------
Q 012413 329 CSLKQNKERA-------------VSAG---------AVRPLVGM----LAGQGEGMAEKAMVVLSLLAG----------- 371 (464)
Q Consensus 329 ~~~~~~~~~i-------------v~~g---------~v~~Lv~l----L~~~~~~v~~~A~~aL~nLa~----------- 371 (464)
|.++.|+..+ .+.| .+..|.++ +..+.-.....|+.-+-.+-.
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 3344454332 2222 11111111 011111111222222222211
Q ss_pred CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhh---cCCHHHHHHHHHH
Q 012413 372 IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQ---TGSVRAKHKAETL 448 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---s~~~~v~~~A~~a 448 (464)
....++.|...|++..|++.+-...++++..-+..|..+++.++.++......|.++.|++++- +++...-..+..+
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 1245788899999999999999999999999999999999999999999999999999999863 4555666777888
Q ss_pred HHHhhcCCCCC
Q 012413 449 LGYLREPRQEG 459 (464)
Q Consensus 449 L~~L~~~~~~~ 459 (464)
+.+|+.+|-..
T Consensus 977 vemLgayrlsp 987 (2799)
T KOG1788|consen 977 VEMLGAYRLSP 987 (2799)
T ss_pred HHHHhhccCCc
Confidence 88888877654
No 176
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.00 E-value=3 Score=44.24 Aligned_cols=220 Identities=19% Similarity=0.136 Sum_probs=114.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhcc
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGAC 300 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~ 300 (464)
.|.|-..|++...-+...++++++.++...-. ..++ ..+|..|-.+|++.....|-.|.++|..|+.....+-.+
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v--- 340 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG-SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV--- 340 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee---
Confidence 45555566666678899999999998753211 1122 236778888999999999999999999998763332222
Q ss_pred CChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHH--
Q 012413 301 GAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGRE-- 377 (464)
Q Consensus 301 g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~-- 377 (464)
+=+.+-.|+.+.+..+-..|...|..- ..+++...++. .+..++.+-..+-+.-+..++..|+ .++.-+.
T Consensus 341 -cN~evEsLIsd~Nr~IstyAITtLLKT-Gt~e~idrLv~-----~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 341 -CNKEVESLISDENRTISTYAITTLLKT-GTEETIDRLVN-----LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred -cChhHHHHhhcccccchHHHHHHHHHc-CchhhHHHHHH-----HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 123344455555555555555444331 12233333222 1222222222222333444444444 2332211
Q ss_pred ------HHHhcCc-------HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH------c--------CChHHH
Q 012413 378 ------AIVEENG-------IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR------E--------GGIPPL 430 (464)
Q Consensus 378 ------~i~~~g~-------i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~------~--------g~i~~L 430 (464)
.+.++|+ +.++...++ ..|+.++.|+..||....+++-++..+.= + ..+..+
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhI 492 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHI 492 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHH
Confidence 1223443 233333332 24555666655555554433322222111 1 123344
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhh
Q 012413 431 VALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 431 v~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.+-+--++.-||..|..||..++
T Consensus 493 yNR~iLEN~ivRsaAv~aLskf~ 515 (898)
T COG5240 493 YNRLILENNIVRSAAVQALSKFA 515 (898)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc
Confidence 44444467788888988888776
No 177
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.94 E-value=0.43 Score=46.01 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh
Q 012413 317 GKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLA-GQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 317 v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
....|+.+|..++- |++.+..+.+..++..|+.+|. ..++.++..++.+|..+. .++.+...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567889988888 8999999999999999999994 456788888888877776 88999999999999999999999
Q ss_pred cC--CHHHHHHHHHHHHHHhh
Q 012413 394 DG--SVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 394 ~~--~~~v~~~A~~aL~~L~~ 412 (464)
+. +.+++..++..|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 64 68888888888876554
No 178
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.38 Score=55.90 Aligned_cols=263 Identities=14% Similarity=0.050 Sum_probs=141.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcC--CCchHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPLLKCSDPWTQEHSVTALLNLSL--HENNKT 254 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~--~~~~~~ 254 (464)
..+.|...+.+++|..|.+++-.|..+.+.-...+..... .........+|.++|.-+|..|..-|+-+=. +...++
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 3444556667899999999877776665543333333332 3445677888988888888888877654321 223333
Q ss_pred HHHhcCcHHHHHHHHccCCHH-------H---------------HHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc
Q 012413 255 LITNAGAIKSLVYVLKTGTET-------S---------------KQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~-------v---------------~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~ 312 (464)
- .+..|+.-|..+... . ....-.=|++|+.+ +.+...|-...+|-++
T Consensus 899 ~-----LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd------l~qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 899 S-----LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD------LGQPDLVYKFMQLANH 967 (1702)
T ss_pred H-----HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh------cCChHHHHHHHHHhhh
Confidence 3 344555555432111 0 11111222222211 1122222233333333
Q ss_pred C-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHH
Q 012413 313 G-SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVE 390 (464)
Q Consensus 313 ~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~ 390 (464)
. ...-++-|+.-++.|+.....+..=.-...||.|..+=-+++..++. |+.-+++.- ..+.....-.-......|+.
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLV 1046 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 2 33345556666666665331111111233788888887777777654 455555443 33222111122456777888
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc--CChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 391 AIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVRE--GGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 391 lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
-|.+..-++|+.++.||..|-...+.. .+.++ ..-..+.+.+.+=.+.||+.|-.+.+.+++
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999764321 11111 222333344434456778777777666554
No 179
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.90 E-value=1.6 Score=48.42 Aligned_cols=236 Identities=13% Similarity=0.048 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
+..|.....+..++...+.....+.+.+. -.+...+..+. +..+-++..|+.+++-.++..-... ...+.+..|+
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHH
Confidence 45666666777777766554222222211 12233333333 4556678888888877773211110 1255777888
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc--CChhhHHHHHHHHHHHhcCcchHHHHHHcCCH
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY--GSSRGKKDALTTLYKLCSLKQNKERAVSAGAV 344 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v 344 (464)
++....+.++......+|+..+..+.-...-.+.-..|..+.++.. +++.+...+-.++..|+....+..-+.+. .+
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~-~i 615 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER-LI 615 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-HH
Confidence 8888888899999999999988765444444555667888887653 58888888888888888755555444443 88
Q ss_pred HHHHHhhcCCC----HHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhH
Q 012413 345 RPLVGMLAGQG----EGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNR 418 (464)
Q Consensus 345 ~~Lv~lL~~~~----~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~ 418 (464)
|.++..|..+. .....-|+.+|..+..+ +.-.....-.-+.+++.++.- +++...-+++..||..+...+.++-
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~ 695 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQL 695 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHH
Confidence 99999998766 56677788888877632 222222223345677777665 5678888999999999987765543
Q ss_pred HHHHHcCChH
Q 012413 419 GLLVREGGIP 428 (464)
Q Consensus 419 ~~i~~~g~i~ 428 (464)
..-..+++..
T Consensus 696 ~t~~~e~g~~ 705 (1005)
T KOG2274|consen 696 LTWHDEPGHN 705 (1005)
T ss_pred HhhccCCCcc
Confidence 3333344444
No 180
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=1.9 Score=49.22 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=139.9
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-C-chHHHHHhcCcH
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE--SGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-E-NNKTLITNAGAI 262 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~--~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~-~~~~~i~~~g~i 262 (464)
++.+..+|..+-+.|..+... +.......+ ......|.+-+++...-.+..++.+|..|-.. + +....+.. .|
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HH
Confidence 455889999999999988876 333222211 12333444555556667788888888887652 3 33333332 46
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccc----ccchhhhhccCChHHHHHHhhcC--ChhhHHHH--HHHHHHHhcC-cc
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALI----EENKSSIGACGAIPPLVSLLIYG--SSRGKKDA--LTTLYKLCSL-KQ 333 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~----~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A--~~aL~nL~~~-~~ 333 (464)
|-++-.++..+...+..+..+|..|+.. +.+.+. ....|...+..+.-+ ....+..+ +-++..+... ..
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666888999999999999988731 111111 111455555555543 22223222 3344443331 11
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
.-..-.-.+.+..+..+|.+..++++..|++.+..++ .+++..-.-...-.++.+..++++....++...-..|-.|+.
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1111111335566667778899999999999999998 677766665666688999999988888999988888888875
Q ss_pred c
Q 012413 413 E 413 (464)
Q Consensus 413 ~ 413 (464)
.
T Consensus 899 k 899 (1176)
T KOG1248|consen 899 K 899 (1176)
T ss_pred H
Confidence 3
No 181
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.83 E-value=0.054 Score=34.20 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKN 207 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~ 207 (464)
.++.+++++++++++||..|+.+|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 367789999999999999999999988764
No 182
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.83 E-value=0.047 Score=34.47 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.9
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 427 IPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 427 i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+|.|++++.+++++||..|+++|+.|.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999864
No 183
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=2.2 Score=49.89 Aligned_cols=282 Identities=14% Similarity=0.082 Sum_probs=147.2
Q ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q 012413 176 QPTVKICIDGL----QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L----~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~ 251 (464)
+|.++.||-.| .++++.|+..-..+=..|..++...-... -...++-|+.-|.+...++|+.+|.||..|....+
T Consensus 993 ~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y-~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEY-LNEILDELLVNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC
Confidence 44444445444 46777776544443344444422111111 13456667777788889999999999999998654
Q ss_pred hHHHHHh-cCcHHHHHHHHccCCHHHHHHH---HHHHHHhccc--c--c-chhhhhccCChHHHHHH-hhcCChhhHHHH
Q 012413 252 NKTLITN-AGAIKSLVYVLKTGTETSKQNA---ACALMSLALI--E--E-NKSSIGACGAIPPLVSL-LIYGSSRGKKDA 321 (464)
Q Consensus 252 ~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a---~~aL~~Ls~~--~--~-~~~~i~~~g~i~~Li~l-L~~~~~~v~~~A 321 (464)
.-+..-. ......+.+.+.+-.+.+|..| +.+|..|+.. + . .+..-.-.-++|.|+.= ..+.-.++|+.+
T Consensus 1072 ~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1072 FDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 4222111 1233334444444455666654 5555555532 1 1 01111111223333321 114467899999
Q ss_pred HHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHH-----------HHHHHH-HHhCCHh---hHHHHHh-----
Q 012413 322 LTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEK-----------AMVVLS-LLAGIAE---GREAIVE----- 381 (464)
Q Consensus 322 ~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~-----------A~~aL~-nLa~~~~---~~~~i~~----- 381 (464)
+.++..|+++....-+-.-...+|.|+.....-.+.+... |+..++ +.+.+.. .....+.
T Consensus 1152 i~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred HHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence 9999999996543222222336677777766554444222 222211 1121111 1111111
Q ss_pred --cCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 382 --ENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAESV-KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 382 --~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
...+|.+.++++.+ .-..|..++..+..|+..-. +... .....+..++-.+++-++.+++.-+.|.+.+.+...
T Consensus 1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence 34567777777653 34445566666666653200 0000 001234444455566688999999999999988766
Q ss_pred CCC
Q 012413 458 EGP 460 (464)
Q Consensus 458 ~~~ 460 (464)
+++
T Consensus 1310 ~dq 1312 (1702)
T KOG0915|consen 1310 PDQ 1312 (1702)
T ss_pred hHH
Confidence 654
No 184
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.64 E-value=0.7 Score=48.06 Aligned_cols=188 Identities=14% Similarity=0.083 Sum_probs=117.8
Q ss_pred hHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 176 QPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL-KCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL-~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
...+..++.... ..++..+..++++|..+....+... .. ...+..+...+ ....+..+..+..++..+++
T Consensus 188 ~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K----- 259 (415)
T PF12460_consen 188 EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITK----- 259 (415)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----
Confidence 346666666654 4568999999999998887622211 10 12334444444 23344444444444444431
Q ss_pred HHHHh-----cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccc--------hhhhhcc----CChHHHHHHhhcCCh
Q 012413 254 TLITN-----AGAIKSLVYVLKTGTETSKQNAACALMSLALI-EEN--------KSSIGAC----GAIPPLVSLLIYGSS 315 (464)
Q Consensus 254 ~~i~~-----~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~--------~~~i~~~----g~i~~Li~lL~~~~~ 315 (464)
..+.+ ...+..|+.+|.+ +++...++.++.-|..+ ++. -..+.+. ..+|.|++-.+..+.
T Consensus 260 aLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 260 ALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred HHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 11111 1245667777766 67788888888887766 221 1122222 246777777777777
Q ss_pred hhHHHHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 316 RGKKDALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
..+..-+.+|.++..+-+....+-+ ...+|.|++.|..++.+++..++.+|..+....
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 7888999999999985443322222 458899999999999999999999999988543
No 185
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.59 E-value=3.1 Score=43.29 Aligned_cols=133 Identities=18% Similarity=0.145 Sum_probs=99.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCc---hhHHHHHhcCChHHHHHhhcCC-------CHHHHHHHHHHHHHhcC
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRS---DNRVLIGESGAVPALVPLLKCS-------DPWTQEHSVTALLNLSL 248 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~---~~r~~i~~~g~i~~Ll~lL~~~-------~~~v~~~A~~aL~~La~ 248 (464)
...|..+++..+..-|.+|+.....+.++.+ .+++.+.++-+.+.+-.+|... +.-.+..+..+|...+.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3345666666677778888888888888755 3466788888888888888762 23346778888888888
Q ss_pred CCchH--HHHHhcCcHHHHHHHHccC-CH------HHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC
Q 012413 249 HENNK--TLITNAGAIKSLVYVLKTG-TE------TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG 313 (464)
Q Consensus 249 ~~~~~--~~i~~~g~i~~Lv~lL~~~-~~------~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~ 313 (464)
.++.. ..++ ..||.|...+... ++ .+...+-.+|..++.++.+...++..|+++.+.++-.-+
T Consensus 93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence 77543 3344 3699999988753 22 377889999999999999999999999999999876544
No 186
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.38 E-value=1.5 Score=46.90 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=84.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccC
Q 012413 224 LVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACG 301 (464)
Q Consensus 224 Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g 301 (464)
++...+ .++..++-|+..+....++ |+.... ++..++.|..+++..+|.+|...|..+|.+ ++....+
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv---- 97 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV---- 97 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH----
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH----
Confidence 444444 4678888899888888776 665444 788899999999999999999999999987 4555555
Q ss_pred ChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhc---CCCHHHHHHHHHHHHH
Q 012413 302 AIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA---GQGEGMAEKAMVVLSL 368 (464)
Q Consensus 302 ~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~---~~~~~v~~~A~~aL~n 368 (464)
...|++||.++++.-...+-.+|..|...+. .+.+..|...+. ..++.+++.++..|..
T Consensus 98 -aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 98 -ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp -HHHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 6789999999888777777777776655221 234455555554 4567788888876643
No 187
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.35 E-value=0.17 Score=45.28 Aligned_cols=145 Identities=18% Similarity=0.110 Sum_probs=94.6
Q ss_pred ChHHHHHhhc--CCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccc-hh
Q 012413 220 AVPALVPLLK--CSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EEN-KS 295 (464)
Q Consensus 220 ~i~~Ll~lL~--~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~-~~ 295 (464)
.++.++..|. ...+++|..|.-++..+- +..++.+.+ -.-+.+-.++..++.+-...+..++..+=.. ++. ..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3455555554 366788888988888873 222222222 1223344444444444666677777766544 343 44
Q ss_pred hhhccCChHHHHHHhh--cCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhc-CCCHH-HHHHHHHHHHH
Q 012413 296 SIGACGAIPPLVSLLI--YGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA-GQGEG-MAEKAMVVLSL 368 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~-~~~~~-v~~~A~~aL~n 368 (464)
.+...|.++.++.++. ..+..+...++.+|..-|.+...+..+.+. +++.|-..++ +++.. ++..|+-+|.-
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 4556888899999999 678899999999998877777777666665 8899999995 44454 67777777653
No 188
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.35 E-value=2.9 Score=43.46 Aligned_cols=186 Identities=19% Similarity=0.143 Sum_probs=120.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCC----chHHHHHhcCcHHHHHHHHccC-------CHHHHHHHHHHHHHhccccc
Q 012413 224 LVPLLKCSDPWTQEHSVTALLNLSLHE----NNKTLITNAGAIKSLVYVLKTG-------TETSKQNAACALMSLALIEE 292 (464)
Q Consensus 224 Ll~lL~~~~~~v~~~A~~aL~~La~~~----~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~a~~aL~~Ls~~~~ 292 (464)
+..+++....+-+-.|+..+..+.++. .+|+.+.++=|.+.+-++|.++ +.-.+..+...|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 556666666667788888888888864 4677899999999999999764 33456677788888888776
Q ss_pred chhhhhccCChHHHHHHhhcC-Chh------hHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHH-HHHHHH
Q 012413 293 NKSSIGACGAIPPLVSLLIYG-SSR------GKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGM-AEKAMV 364 (464)
Q Consensus 293 ~~~~i~~~g~i~~Li~lL~~~-~~~------v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v-~~~A~~ 364 (464)
....----..||.|.+.+... ++. +...+-.+|..++.++.+...++..|+++.+.++-.-++... ..-++.
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 433222235689999998754 333 677888999999999999999999999999987754443222 233333
Q ss_pred HHHHHh-C---CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 365 VLSLLA-G---IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 365 aL~nLa-~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
++--++ + .++.-..+.. .|..+-.=+...+...+-..+..|..+-
T Consensus 176 Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333222 1 1222222221 1333333333345566667777777544
No 189
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=94.33 E-value=0.26 Score=54.45 Aligned_cols=186 Identities=16% Similarity=0.121 Sum_probs=121.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchh-------------HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDN-------------RVLIGESGAVPALVPLLKCSDPWTQEHSVTALL 244 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~-------------r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~ 244 (464)
.-..++.+|+.++ +-..++.++.-+..+.+.. |+.+. ...+|.|++..+......+..=..+|.
T Consensus 816 ia~klld~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHH
Confidence 4455566666533 2224455555454444322 22232 367888998888766677778888888
Q ss_pred HhcCCCchHHHHH-h-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCC---hhhHH
Q 012413 245 NLSLHENNKTLIT-N-AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGS---SRGKK 319 (464)
Q Consensus 245 ~La~~~~~~~~i~-~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~---~~v~~ 319 (464)
+...+-+. +.+. + ....|.|++.|.-+|..+|..+..++.-+....+.-..---...+|.++.+=.+++ ..+|.
T Consensus 893 hVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHH
Confidence 87765333 3332 2 55789999999999999999998888765432211111111234777777766654 67999
Q ss_pred HHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 320 DALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLS 367 (464)
Q Consensus 320 ~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~ 367 (464)
.|+.+|..|++ .|...-.-....++..|...|.++..-+|++|..+=.
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 99999999999 5544333334458888999999999989998876543
No 190
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.30 E-value=0.67 Score=41.39 Aligned_cols=144 Identities=16% Similarity=0.090 Sum_probs=93.9
Q ss_pred hHHHHHHhhc--CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHH-
Q 012413 303 IPPLVSLLIY--GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREA- 378 (464)
Q Consensus 303 i~~Li~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~- 378 (464)
+..++..|.. ..+.+|..++-++..+- +..++.+.+ -.-+.+-.++...+.+....+..++..|= ..++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4556666554 57789999998888884 333333322 12334444554444455777778887776 44554444
Q ss_pred HHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHH-HHHHHHHHHHH
Q 012413 379 IVEENGIAALVEAIE--DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVR-AKHKAETLLGY 451 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~-v~~~A~~aL~~ 451 (464)
+..+|.++.++.++. ..+..++..++.+|..=|. +. .+...+...+++.|.++++. +++. +|..|+-.|-.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 456889999999999 6788888888888877664 33 44444445569999999965 4555 78887766643
No 191
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.26 E-value=0.72 Score=50.91 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=92.0
Q ss_pred hHHHHHHcCCHHHHHHhhcCC--------CHHHHHHHHHHHHHHhCCHhhHHHHHhc--------CcHHHHHHHHhc---
Q 012413 334 NKERAVSAGAVRPLVGMLAGQ--------GEGMAEKAMVVLSLLAGIAEGREAIVEE--------NGIAALVEAIED--- 394 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~--------~~~v~~~A~~aL~nLa~~~~~~~~i~~~--------g~i~~Lv~lL~~--- 394 (464)
..+.+...+++..++++.... ..+...+|+.+|+.+..-+..+.++..+ .|+..+++.-..
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 345677788888888887532 3567888999999888888888887642 145555554432
Q ss_pred -CCHHHHHHHHHHHHHHhhcCHHh-----------------------------------HHHHHHcCChHHHHHhhhcCC
Q 012413 395 -GSVKGKEFAVLTLLQLCAESVKN-----------------------------------RGLLVREGGIPPLVALSQTGS 438 (464)
Q Consensus 395 -~~~~v~~~A~~aL~~L~~~~~~~-----------------------------------~~~i~~~g~i~~Lv~lL~s~~ 438 (464)
.++.++..|+.+|-|..+..|+. ...+....||..|+++|+-..
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 37999999999999987643211 223455789999999998754
Q ss_pred -----HHHHHHHHHHHHHhhcCCCCC
Q 012413 439 -----VRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 439 -----~~v~~~A~~aL~~L~~~~~~~ 459 (464)
.-+|.-|+.+|-.|++++..+
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVr 778 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVR 778 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHH
Confidence 389999999999999876543
No 192
>PRK14707 hypothetical protein; Provisional
Probab=94.15 E-value=8.6 Score=46.87 Aligned_cols=341 Identities=14% Similarity=0.077 Sum_probs=194.1
Q ss_pred cccccCCcchhHHHHHHhhhhhcccc-----hhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCc
Q 012413 88 AKSVKSTISEDDYLNVSQAFSDFSVC-----SSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF 162 (464)
Q Consensus 88 ~~~~~~~~~e~~~~~L~~ll~~~~~~-----r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~ 162 (464)
||-+.+.-=+.+..-|...+...... .+..+..|+-++..|+...+-..+. .+ ...|..+
T Consensus 173 SKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~----------~l---a~~l~~~-- 237 (2710)
T PRK14707 173 SKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQGVATVLNALCKWPDTPDCGNAVS----------AL---AERLADE-- 237 (2710)
T ss_pred hcCCCCchHHHHHHHHHHHhcCChhhhcccchHHHHHHHHHHhcCCCChhHHHHHH----------HH---HHHHcCc--
Confidence 55555555666666666555432222 2355666777777777665543211 11 2233222
Q ss_pred hhhHhhhcCCCCchHHHHHHHHhcC-CCCHHHHHHHHHHH-HHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHH
Q 012413 163 STEIIESISPEDLQPTVKICIDGLQ-SSSVAIKRSAAAKL-RLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHS 239 (464)
Q Consensus 163 s~~i~~~~~~~~~~~~v~~Lv~~L~-s~~~~vr~~A~~~L-~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A 239 (464)
+..++.+... .|-.++..|+ -++..+..+++..| ..++.+ ...++.+-..++ --.++-|. -++..+-..|
T Consensus 238 -~~l~~~~~~q----~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q~v-analNalSKwpd~~vc~~A 310 (2710)
T PRK14707 238 -SRLRNELKPQ----ELGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPINV-TQALNALSKWADLPVCAEA 310 (2710)
T ss_pred -HHHHHhCChH----HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHHHH-HHHHhhhhcCCCchHHHHH
Confidence 4455555443 3344455554 36666777777777 445544 666666543333 33344443 3666555544
Q ss_pred HHHH-HHhcCCCchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHH-HhcccccchhhhhccCChHHHHHHhhc-CCh
Q 012413 240 VTAL-LNLSLHENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALM-SLALIEENKSSIGACGAIPPLVSLLIY-GSS 315 (464)
Q Consensus 240 ~~aL-~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~-~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~ 315 (464)
+..| ..|..+++.++.+ +.-.+...+..|.. ++..+-..|+.+|. .|+.+++.++.+--.| +...++-|.. ++.
T Consensus 311 a~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~ 388 (2710)
T PRK14707 311 AIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDT 388 (2710)
T ss_pred HHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCc
Confidence 4444 4566656655443 33445555555544 56666666666665 4777777766664344 5555555544 555
Q ss_pred hhHHHHHHHHH-HHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHH-HhCCHhhHHHHHhcCcHHHHHHHHh
Q 012413 316 RGKKDALTTLY-KLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSL-LAGIAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 316 ~v~~~A~~aL~-nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
.+.+.|+..|. .|..+.+.++.|-..|+-..|-.+-+-++..+-..++..|.. ++...+.++.+--.+ |...++.+.
T Consensus 389 ~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalS 467 (2710)
T PRK14707 389 PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALS 467 (2710)
T ss_pred hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhh
Confidence 66655555554 455566777666666555555555577777776666665554 445566666655444 444444444
Q ss_pred -cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhh
Q 012413 394 -DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLR 453 (464)
Q Consensus 394 -~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~ 453 (464)
=++..+...|+..|..=..+.+..++.|--.++...|-.+.+-++ +...+.+.|+-+.+.
T Consensus 468 KWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~ 529 (2710)
T PRK14707 468 KWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV 529 (2710)
T ss_pred cCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Confidence 356667777777776666667777777777777777777777765 455555555555554
No 193
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.14 E-value=0.23 Score=45.28 Aligned_cols=77 Identities=17% Similarity=0.363 Sum_probs=64.3
Q ss_pred HHHHHHcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHHhCCHhhHHHHHh-cCcHHHHHHHHhcCCHHHHHHHH
Q 012413 335 KERAVSAGAVRPLVGMLAG---------QGEGMAEKAMVVLSLLAGIAEGREAIVE-ENGIAALVEAIEDGSVKGKEFAV 404 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~---------~~~~v~~~A~~aL~nLa~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~ 404 (464)
.+.|++.||+..|+.+|.. .+......++.||..|..+..+...++. .+++..|+..|.+.+..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 5677888999999998852 3356788899999999999999998887 77999999999999999999999
Q ss_pred HHHHHHh
Q 012413 405 LTLLQLC 411 (464)
Q Consensus 405 ~aL~~L~ 411 (464)
..|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.14 E-value=1.4 Score=48.91 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=114.6
Q ss_pred HHHHhccc-ccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCH--HHHHHhhc-CCCHH
Q 012413 283 ALMSLALI-EENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAGAV--RPLVGMLA-GQGEG 357 (464)
Q Consensus 283 aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v--~~Lv~lL~-~~~~~ 357 (464)
+|+++... ++++..+.+.|+...+..+++.. +..+...+++.+.+++...+....+....-+ ...-.++. ..+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 77887766 68899999999999999999875 6779999999999999966544333211111 12222333 33347
Q ss_pred HHHHHHHHHHHHhCCH----------hhHHHHHh--------------cCcHHH-HHHHHh-cCCHHHHHHHHHHHHHHh
Q 012413 358 MAEKAMVVLSLLAGIA----------EGREAIVE--------------ENGIAA-LVEAIE-DGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 358 v~~~A~~aL~nLa~~~----------~~~~~i~~--------------~g~i~~-Lv~lL~-~~~~~v~~~A~~aL~~L~ 411 (464)
....|+.+|+.+.... ...+.+.+ ..-..+ +..++. +..+..+..|+|++.++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 7888999999887431 11111111 112233 455555 457888999999999999
Q ss_pred hcCHHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHH
Q 012413 412 AESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAETLLGY 451 (464)
Q Consensus 412 ~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~~ 451 (464)
...++++..+.+.|+++.+.+.-... -.+++..+...+..
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 99999999999999999888876443 34555555544443
No 195
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.08 E-value=1.6 Score=48.50 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=89.7
Q ss_pred HHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcH--HHHHHHHhcCCH-H
Q 012413 324 TLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIAEGREAIVEENGI--AALVEAIEDGSV-K 398 (464)
Q Consensus 324 aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i--~~Lv~lL~~~~~-~ 398 (464)
+|++++. +++++..+++.||...+...+..- ..+.+..+++.+.+++...+.+.......-+ ..+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 8889988 678999999999999999999754 4677999999999999655443332221111 233334443333 6
Q ss_pred HHHHHHHHHHHHhhcCHH---------hHHHHHH--------------cCChHH-HHHhhhcC-CHHHHHHHHHHHHHhh
Q 012413 399 GKEFAVLTLLQLCAESVK---------NRGLLVR--------------EGGIPP-LVALSQTG-SVRAKHKAETLLGYLR 453 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~~---------~~~~i~~--------------~g~i~~-Lv~lL~s~-~~~v~~~A~~aL~~L~ 453 (464)
.-..|+..|..+...++. ....+++ .....+ +..++... .+..+.+|.|+++++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 667777777777764221 1111111 122333 55566554 5789999999999999
Q ss_pred cCCCC
Q 012413 454 EPRQE 458 (464)
Q Consensus 454 ~~~~~ 458 (464)
++.++
T Consensus 654 ~~~~~ 658 (699)
T KOG3665|consen 654 EQNKE 658 (699)
T ss_pred HcChh
Confidence 98876
No 196
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.07 E-value=1.4 Score=46.47 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=111.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCCh----hhHHHHHHHHHHHhcCcchHH
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSS----RGKKDALTTLYKLCSLKQNKE 336 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~----~v~~~A~~aL~nL~~~~~~~~ 336 (464)
....+.+.+.+++...+..+...|..++.+......++...++..|..++.+++. .+....+.++..+..+.-..=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3456778888999888888999999999988888888899999999999998743 566667777776654322100
Q ss_pred HHHHcCCHHHHHHhh--cCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 337 RAVSAGAVRPLVGML--AGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL--~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
..+....|.....+. +..+..+-..|+..|.++. ..+..+..+.++--++.|+.++...+..++..|...|-.+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 011112223333333 2334566788899999998 4555778888888999999999999999999888877777655
Q ss_pred C
Q 012413 414 S 414 (464)
Q Consensus 414 ~ 414 (464)
.
T Consensus 244 a 244 (713)
T KOG2999|consen 244 A 244 (713)
T ss_pred C
Confidence 3
No 197
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.05 E-value=6.1 Score=44.41 Aligned_cols=213 Identities=18% Similarity=0.135 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc----CCC----HHHHHHHHHHHHHhcCCCchH-----HHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK----CSD----PWTQEHSVTALLNLSLHENNK-----TLI 256 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~----~~~----~~v~~~A~~aL~~La~~~~~~-----~~i 256 (464)
..+.-...+..|..+++- ..+|+.+.+.|+++.|+..|. ... +.+-+..+.++..+....... ...
T Consensus 135 ~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~ 213 (802)
T PF13764_consen 135 GRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSS 213 (802)
T ss_pred cHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 445555567777777777 899999999999999998774 333 566666666666654321110 011
Q ss_pred H--------hcCcHHHHHHHHccC----CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc---------CCh
Q 012413 257 T--------NAGAIKSLVYVLKTG----TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY---------GSS 315 (464)
Q Consensus 257 ~--------~~g~i~~Lv~lL~~~----~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~---------~~~ 315 (464)
. +...+..|+..+.++ ++.+....+..|-+|+...+.+ +..|++.++. ...
T Consensus 214 ~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~--------m~~Lv~~F~p~l~f~~~D~~~~ 285 (802)
T PF13764_consen 214 SSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK--------MDALVEHFKPYLDFDKFDEEHS 285 (802)
T ss_pred ccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH--------HHHHHHHHHHhcChhhcccccC
Confidence 1 122367777777654 6788889999999998764332 2333333221 111
Q ss_pred hhHHHHHHHHHHHhcC-------cchHHHHHHcCCHHHHHHhhcCCCH--------HH--------HHHHHHHHHHHhCC
Q 012413 316 RGKKDALTTLYKLCSL-------KQNKERAVSAGAVRPLVGMLAGQGE--------GM--------AEKAMVVLSLLAGI 372 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~-------~~~~~~iv~~g~v~~Lv~lL~~~~~--------~v--------~~~A~~aL~nLa~~ 372 (464)
.--...+.+++.++.. ...++.+++.|.+...+.+|...-+ +. ...++..|.-|+..
T Consensus 286 ~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~g 365 (802)
T PF13764_consen 286 PDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARG 365 (802)
T ss_pred chHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhc
Confidence 1112346666666552 1346788999999998888854322 22 34577888888844
Q ss_pred HhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhh
Q 012413 373 AEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~ 412 (464)
....+.++..+++ ++++.|.. .+..+=..|=-+|-.|..
T Consensus 366 h~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 366 HEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 4433344556666 56666653 245555555555555554
No 198
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.01 E-value=0.54 Score=42.83 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhcC---------CCHHHHHHHHHHHHHh
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKN-RSDNRVLIGESGAVPALVPLLKC---------SDPWTQEHSVTALLNL 246 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~-~~~~r~~i~~~g~i~~Ll~lL~~---------~~~~v~~~A~~aL~~L 246 (464)
...+.+++.+.+..... ..+..|...-.. +...-+.+++.||+..|+.+|.. .+.+....++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45555666676554332 333334222222 22344667788999999998753 4568899999999999
Q ss_pred cCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 012413 247 SLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACALMSLA 288 (464)
Q Consensus 247 a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls 288 (464)
..+..+...+.. .+++..|+..|.+++..++..++..|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 988877776665 889999999999999999999999998875
No 199
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=93.94 E-value=2.5 Score=40.93 Aligned_cols=207 Identities=19% Similarity=0.147 Sum_probs=111.4
Q ss_pred HHhhhhhhhhccCCcc-cccCCcchhHHHHHHhhhhhcccc-------hhhhHHHHHHhhcCCCchhhhhcCcccCcccc
Q 012413 74 IDMRLGELASKTNDAK-SVKSTISEDDYLNVSQAFSDFSVC-------SSDISGELQRLASLPSPENILRQPNENNCQAE 145 (464)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~L~~ll~~~~~~-------r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~ 145 (464)
++..+..|.+.| ++ .....++|+.+..|.++++..... .....-.+..+.+.|. +.
T Consensus 16 ~~~i~~KL~efn--~~~~~~~~l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~--------------~~ 79 (268)
T PF08324_consen 16 LDKILKKLKEFN--EKLQKELKLSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLSWPP--------------ES 79 (268)
T ss_dssp HHHHHHHHHHHH--TTSHCCT-S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-C--------------CC
T ss_pred HHHHHHHHHHHH--HhCccccCCCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCC--------------cc
Confidence 455666666665 33 478889999999999999984332 1222223333333322 12
Q ss_pred cCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhccCchhHHHHHhc-C-ChH
Q 012413 146 LEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGL-QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGES-G-AVP 222 (464)
Q Consensus 146 ~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv~~L-~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~-g-~i~ 222 (464)
+.|.++-+ ..+...............+ +...+..++... .+..+..+.-+++++.|+..+ +..+..+.+. + .+.
T Consensus 80 ~fP~lDLl-Rl~~l~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~ 156 (268)
T PF08324_consen 80 RFPALDLL-RLAALHPPASDLLASEDSG-IADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSIL 156 (268)
T ss_dssp -HHHHHHH-HHHCCCHCHHHHHHSTTTH--HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHH
T ss_pred chhHHhHH-HHHHhCccHHHHHhccccc-hHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHH
Confidence 44555222 2222111111122111111 123333333322 346788899999999999987 5666666543 3 344
Q ss_pred HHHHhhcCC----CHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHHHHHHHcc--CCHHHHHHHHHHHHHhcccccch
Q 012413 223 ALVPLLKCS----DPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLVYVLKT--GTETSKQNAACALMSLALIEENK 294 (464)
Q Consensus 223 ~Ll~lL~~~----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~~~~ 294 (464)
..+..+... +..++..++.++.|++.. ......=.....+..++..+.. .+++....++-+|++|...+...
T Consensus 157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 444444443 788999999999999742 1110000011134555553322 58999999999999998665444
Q ss_pred hhhhc
Q 012413 295 SSIGA 299 (464)
Q Consensus 295 ~~i~~ 299 (464)
....+
T Consensus 237 ~~~~~ 241 (268)
T PF08324_consen 237 KQLAK 241 (268)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 44444
No 200
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.74 E-value=1.9 Score=48.42 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=125.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPL-LKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~l-L~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..+.+-..+.+.++.-|.+|+..+.....+.. ........|.+..++.. +.+.+..+...|+..|..|+..-.....=
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 33444566778999999999999988876633 11111112333334433 34567888899999999998742111222
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Cc-ch
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LK-QN 334 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~-~~ 334 (464)
...+..|.|+.-+.+....++..+..++-.++.. ..-...++.++..+.+.++.++..+...+..... .+ ..
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 2356889999999998888888777777665431 1112346778888999999999987777666555 33 22
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
...-.-.+.+|.++....+.+.+||..|..+++.+.
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 222233458889999999999999999998888665
No 201
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.59 E-value=0.53 Score=52.19 Aligned_cols=149 Identities=18% Similarity=0.105 Sum_probs=107.9
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchH
Q 012413 259 AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNK 335 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~ 335 (464)
...+|.|+......+...+.+=..+|.+.-.+-. ++.+.. ...+|.|++.|.-+|..+|-.++.++.-+.. ++.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 3478999999887777777777777877655422 133333 4457788888888899999999999887766 33332
Q ss_pred HHHHHcCCHHHHHHhhcCCC---HHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 336 ERAVSAGAVRPLVGMLAGQG---EGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~---~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
..-++ -.+|.++.+=.+.+ ..++..|+.+|..|.. .|...-.-....++.+|...|.++...+|..|+.+=.+
T Consensus 945 t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 945 TEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred hHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 22222 26788887777666 5679999999999997 55555555566788999999999988999998876443
No 202
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.51 E-value=7.9 Score=43.30 Aligned_cols=179 Identities=13% Similarity=0.032 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY 267 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ 267 (464)
+..+.++..|++++...++- ..+ ..+ ..+.++.|+++......++......+|+..++-+.......+.-..|.++.
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~-~vl-~~~-~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~ 578 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKV-KVL-LSL-QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTIN 578 (1005)
T ss_pred CCCCchhHHHHHHHHhccCc-eec-ccc-chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHH
Confidence 45566788888888766633 111 111 257788888888888889999999999998885544445456667777777
Q ss_pred HHc--cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCC----hhhHHHHHHHHHHHhcCc--chHHHHH
Q 012413 268 VLK--TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGS----SRGKKDALTTLYKLCSLK--QNKERAV 339 (464)
Q Consensus 268 lL~--~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~----~~v~~~A~~aL~nL~~~~--~~~~~iv 339 (464)
+.. ++++.+...+-.++..|+....+...+ ....||.++..|..++ .....-++..|..+.+.. +.-+.++
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~ 657 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI 657 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence 653 467777777777777776543332222 2346999999998875 667778888888887743 2333333
Q ss_pred HcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhC
Q 012413 340 SAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 340 ~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~ 371 (464)
. -++|++.++. .+++.+....+..||+.+..
T Consensus 658 ~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 658 C-YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred H-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 3 3788888775 66677888889999998874
No 203
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.50 E-value=1.2 Score=48.28 Aligned_cols=135 Identities=14% Similarity=0.079 Sum_probs=95.0
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhcccccch
Q 012413 216 GESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYV-LKTGTETSKQNAACALMSLALIEENK 294 (464)
Q Consensus 216 ~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~~~~~ 294 (464)
+...++|.|...+++.+..+|..++..+...+..-+ ..++..-.+|.|-.+ ++..+..++.+++-++..+... .
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---l 460 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---L 460 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---H
Confidence 345788999999999999999999999999887544 234444566666554 4556889999999999998722 1
Q ss_pred hhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCC
Q 012413 295 SSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG 355 (464)
Q Consensus 295 ~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~ 355 (464)
+...-..-+.++.+..+..++.+....+.+..++.........++.+.++|.++-+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 1111123355666666777999999888888888774433244444558888888776554
No 204
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.41 E-value=10 Score=40.20 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=123.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCH----HHHHHHHHHHHHhcccccchhh
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTE----TSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
...+...+.+.++.-+..|..-|..++.++.....+....++..|..+..+++. ++....+.++..|-.+.-..-.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456777888888888888999999999998888999999999999999998754 6777777777777555332222
Q ss_pred hhccCChHHHHHHhhc--CChhhHHHHHHHHHHHhcCcc-hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-C-
Q 012413 297 IGACGAIPPLVSLLIY--GSSRGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-G- 371 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~--~~~~v~~~A~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~- 371 (464)
.+...+|..++.+..- .+..+...|+..|-++..... ..+.+.++--+..|+..+...+..++..|+..|-.|- .
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 2333345555555532 366788899999999988665 5566667778899999999999888888877777665 2
Q ss_pred CHhhHHHHHhcCcHHHHHHHHh
Q 012413 372 IAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 372 ~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
.+.-+..+.+.-....+-..+.
T Consensus 245 ~~~~R~~~~~~l~~~~~R~ai~ 266 (713)
T KOG2999|consen 245 PDDKRFEMAKSLEQKQFRNAIH 266 (713)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555444444444443
No 205
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.21 E-value=0.36 Score=37.17 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcC
Q 012413 277 KQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAG 342 (464)
Q Consensus 277 ~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g 342 (464)
++.++|++++++..+.+-..+.+.+.++.++++... +...+|-.+..+|+-++.+.+..+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 468999999999988887777788999999999876 477899999999999999999888877765
No 206
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.05 E-value=0.83 Score=50.00 Aligned_cols=200 Identities=19% Similarity=0.134 Sum_probs=111.1
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhcCC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----SDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~----~~~~v~~~A~~aL~~La~~ 249 (464)
+..+.+..+.+++.+....- ..|...|..+....... ....+..+..++++ .++.++..|+.+++.+...
T Consensus 392 GT~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~ 465 (618)
T PF01347_consen 392 GTNPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHK 465 (618)
T ss_dssp -SHHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence 44677778788887643222 23555565555442111 22345556666665 5678888999999888642
Q ss_pred C--c--------hHHHHHhcCcHHHHHHHHc----cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--
Q 012413 250 E--N--------NKTLITNAGAIKSLVYVLK----TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG-- 313 (464)
Q Consensus 250 ~--~--------~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~-- 313 (464)
- . ..........++.|...|. .++..-+..++.+|+|+. -...++.|...+...
T Consensus 466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g----------~~~~i~~l~~~i~~~~~ 535 (618)
T PF01347_consen 466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG----------HPESIPVLLPYIEGKEE 535 (618)
T ss_dssp HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-
T ss_pred eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----------CchhhHHHHhHhhhccc
Confidence 1 1 1111122346666766665 457788899999999982 234677777777765
Q ss_pred -ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHH
Q 012413 314 -SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ--GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVE 390 (464)
Q Consensus 314 -~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~ 390 (464)
...+|..|+++|..++..... .+.+.|..++.+. +.++|..|..+|-.. .|. ...+..+..
T Consensus 536 ~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~-------~~~l~~i~~ 599 (618)
T PF01347_consen 536 VPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMRC--NPS-------PSVLQRIAQ 599 (618)
T ss_dssp S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------------HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc--CCC-------HHHHHHHHH
Confidence 667889999999988553221 1445667776544 456676666555432 121 234566666
Q ss_pred HHh-cCCHHHHHHHHH
Q 012413 391 AIE-DGSVKGKEFAVL 405 (464)
Q Consensus 391 lL~-~~~~~v~~~A~~ 405 (464)
.+. +++..|......
T Consensus 600 ~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 600 SLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHTT-S-HHHHHHHHH
T ss_pred HHhhCchHHHHHHHHH
Confidence 665 345666554433
No 207
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.74 E-value=7.1 Score=40.58 Aligned_cols=184 Identities=12% Similarity=0.082 Sum_probs=115.1
Q ss_pred hHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCch
Q 012413 176 QPTVKICIDGLQSS-SVAIKRSAAAKLRLLAKN-RSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENN 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~-~~~vr~~A~~~L~~La~~-~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~ 252 (464)
.+.|..+++.++.. ..+-+..|+.-|..+... +...++...+ ..+..+++.|.+ .++..+..|+++|..++.+...
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 45666777777654 556677788766555444 3333332211 345567788887 7888999999999999987543
Q ss_pred HHHHHh--cCcHHHHHHHHccCCHHHHHHHHHH-HHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 253 KTLITN--AGAIKSLVYVLKTGTETSKQNAACA-LMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 253 ~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~a-L~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
+ +.+ .-+|..+++.-++.+.++...|... +.-++.+...+ .|..+..++...+...--.++..+..|+
T Consensus 364 ~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 364 R--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred h--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHH
Confidence 2 222 2355666666666666666555554 44555553322 2444555555566665556666666665
Q ss_pred cC--cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 330 SL--KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 330 ~~--~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
.. .+-...++ ....|.+++.-.+....||..|..||..|.
T Consensus 435 e~l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 435 ERLSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhcCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 52 22222222 347899999999999999999998888665
No 208
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.70 E-value=0.61 Score=51.03 Aligned_cols=167 Identities=20% Similarity=0.084 Sum_probs=95.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhc----CChhhHHHHHHHHHHHhc----C
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIY----GSSRGKKDALTTLYKLCS----L 331 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~----~ 331 (464)
++..+.+++..+...- ..+..+|..|.... .-. ...+..+..++.. .++.++..|+-+++.|.. .
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 5666677776643222 22444455544331 111 1235666666654 356677778777777754 2
Q ss_pred c------chHHHHHHcCCHHHHHHhhc----CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC---CHH
Q 012413 332 K------QNKERAVSAGAVRPLVGMLA----GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG---SVK 398 (464)
Q Consensus 332 ~------~~~~~iv~~g~v~~Lv~lL~----~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~ 398 (464)
. ......+....++.|...+. ..+...+.-++.+|+|+.. ...++.|..++... +..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence 1 01111122335566665554 4456667888999999875 35688888888765 788
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHH
Q 012413 399 GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGY 451 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~~ 451 (464)
+|..|+++|..+....+. .+.+.|..++.+. ++++|-.|..+|-.
T Consensus 540 ~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 999999999988765542 2356677777664 56888888766543
No 209
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=1.7 Score=45.96 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=88.0
Q ss_pred HHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHH
Q 012413 308 SLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGM-LAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIA 386 (464)
Q Consensus 308 ~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~l-L~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~ 386 (464)
+++.+.++-+|...+.+++---... ...|++..|+.. +.+.+.+|++.|..+|+-+|..+ -..+.
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GT------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv 588 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGT------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLV 588 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcC------CcchhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhh
Confidence 4455555555555444443211111 124567777777 67888999999999999888533 34566
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 387 ALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 387 ~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
..+++|. +.+..+|...+.+|+-.|...-. .-++..|-.+..+.+.-||+.|+.++.+|.-+
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLGiacag~G~-------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALGIACAGTGD-------KVATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 7777776 56899999999999988876422 22456677777888999999999999998654
No 210
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.65 E-value=1.4 Score=42.68 Aligned_cols=184 Identities=16% Similarity=0.090 Sum_probs=108.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccC--ChHHHHHHhhc----CChhhHHHHHHHHHHHhcCcchHHH
Q 012413 264 SLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACG--AIPPLVSLLIY----GSSRGKKDALTTLYKLCSLKQNKER 337 (464)
Q Consensus 264 ~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g--~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~ 337 (464)
.+..++..-+.+-+--+...++-+..++.....+...+ ....+..++.. ..+..+.-++++++|+-.++..+..
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~ 146 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQL 146 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHH
Confidence 33444444444445555555666666654444333322 23444444433 3566788899999999999998888
Q ss_pred HHHcC--CHHHHHHhhcCC----CHHHHHHHHHHHHHHhCC-HhhH-HHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHH
Q 012413 338 AVSAG--AVRPLVGMLAGQ----GEGMAEKAMVVLSLLAGI-AEGR-EAIVEENGIAALVEAIE--DGSVKGKEFAVLTL 407 (464)
Q Consensus 338 iv~~g--~v~~Lv~lL~~~----~~~v~~~A~~aL~nLa~~-~~~~-~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL 407 (464)
+.... .+-..+..+... +..++..++..+.|++.. ...+ ..=.....+..+++.+. ..+++....++.+|
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAl 226 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVAL 226 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 87532 344444444333 677899999999999842 1111 00011113455555333 26899999999999
Q ss_pred HHHhhcCHHhHHHHHHcCChHHHHHhhh-cCCHHHHHHHHH
Q 012413 408 LQLCAESVKNRGLLVREGGIPPLVALSQ-TGSVRAKHKAET 447 (464)
Q Consensus 408 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~ 447 (464)
|+|...++.........|+-..+...-. ...+++++.+..
T Consensus 227 GtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 227 GTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 9999777665555444555555555443 346777777654
No 211
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.36 E-value=3.4 Score=44.84 Aligned_cols=132 Identities=16% Similarity=0.038 Sum_probs=83.0
Q ss_pred ChHHHHHHhhcC----ChhhHHHHHHHHHHHhc----CcchHHHHHHcCCHHHHHHhhc----CCCHHHHHHHHHHHHHH
Q 012413 302 AIPPLVSLLIYG----SSRGKKDALTTLYKLCS----LKQNKERAVSAGAVRPLVGMLA----GQGEGMAEKAMVVLSLL 369 (464)
Q Consensus 302 ~i~~Li~lL~~~----~~~v~~~A~~aL~nL~~----~~~~~~~iv~~g~v~~Lv~lL~----~~~~~v~~~A~~aL~nL 369 (464)
.+..+..++.++ ...++..|+-++++|.. ..+.+...+....++.|...|. ..+.+.+.-++.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 467777777753 45577777777776654 2222111222235666666553 34455566778888888
Q ss_pred hCCHhhHHHHHhcCcHHHHHHHHh---cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHH
Q 012413 370 AGIAEGREAIVEENGIAALVEAIE---DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHK 444 (464)
Q Consensus 370 a~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~ 444 (464)
.. ...+..|..++. ..+..+|..|+++|..++...+. .+-+.|+.++.+. ++++|..
T Consensus 474 g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 474 GH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred CC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHH
Confidence 75 234566666665 23678999999999988754332 2456677777664 5688888
Q ss_pred HHHHHHH
Q 012413 445 AETLLGY 451 (464)
Q Consensus 445 A~~aL~~ 451 (464)
|..+|-.
T Consensus 536 A~~~lm~ 542 (574)
T smart00638 536 AVLVLME 542 (574)
T ss_pred HHHHHHh
Confidence 8776644
No 212
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.30 E-value=0.93 Score=51.61 Aligned_cols=129 Identities=19% Similarity=0.156 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSL 265 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~L 265 (464)
..+|+.+.+|.-+|+.+.--+.+.. ....|.|+..++ +++|.+|.++..+++.++.. +.... ..-+.|
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie-----~~T~~L 1003 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHL 1003 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc-----hhhHHH
Confidence 4679999999999988765433222 246889999998 69999999999999999864 33222 245678
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 266 VYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 266 v~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
...|.++++.+|..|..+|.+|-.. ..|.-.|.++.+..+|.+++.+++.-|=.....|+.
T Consensus 1004 y~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1004 YRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 8889999999999999999998553 445558999999999999999999888866666655
No 213
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.19 E-value=1.2 Score=50.88 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=107.0
Q ss_pred ChHHHHHHhhc----CChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh-CCHh
Q 012413 302 AIPPLVSLLIY----GSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLA-GQGEGMAEKAMVVLSLLA-GIAE 374 (464)
Q Consensus 302 ~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa-~~~~ 374 (464)
..|.+++.+++ .++.++.+|.-+|+.++- +.+.++ ...|.|+..+. ++.+-++-++..+++.|+ .++.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34666677754 378899999999999876 334332 26788999996 778889999999999998 5543
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.. +-..+.|...|.+.+..+|..|..+|.+|.. ..++.-.|.+..+..++.+++++++..|..-.+.|+
T Consensus 995 li-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLIL-----ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLIL-----NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHH-----hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 22 2346678888899999999999999999984 346666899999999999999999999995444443
No 214
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.19 E-value=3.1 Score=48.82 Aligned_cols=161 Identities=10% Similarity=0.097 Sum_probs=98.3
Q ss_pred HHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHH
Q 012413 197 AAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETS 276 (464)
Q Consensus 197 A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 276 (464)
|.++...++.+.+..+.. .+.+..++..|..+.+.+|..|..+|..+..-+.. .+.....-..+..-+.+....|
T Consensus 797 a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSF---DPYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred HHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHH
Confidence 444445555553322211 36788888889999999999999999999763221 1112223334445566778899
Q ss_pred HHHHHHHHHHh-cccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCC
Q 012413 277 KQNAACALMSL-ALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG 355 (464)
Q Consensus 277 ~~~a~~aL~~L-s~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~ 355 (464)
|+.|+..++.. ..+++.-..+ ...+++-..+....||+.+...++.+|...+....+++ +...++.-+.++.
T Consensus 872 REAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEE 944 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEE 944 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccch
Confidence 99999999853 3333332222 34566667778889999999999999996555444433 2222333333333
Q ss_pred HHHHHHHHHHHHHH
Q 012413 356 EGMAEKAMVVLSLL 369 (464)
Q Consensus 356 ~~v~~~A~~aL~nL 369 (464)
..++.-+..++.++
T Consensus 945 g~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 945 GNIKKLVRETFLKL 958 (1692)
T ss_pred hHHHHHHHHHHHHH
Confidence 33445444444444
No 215
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.02 E-value=2.9 Score=46.95 Aligned_cols=184 Identities=13% Similarity=0.070 Sum_probs=120.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccccchhhh-hccCChHHHHHH-hhcCChhhHHHHHHHHHHHhcC-cchHHHHH
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALIEENKSSI-GACGAIPPLVSL-LIYGSSRGKKDALTTLYKLCSL-KQNKERAV 339 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i-~~~g~i~~Li~l-L~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv 339 (464)
+.+-.-+.+.+..-|..|+..+........ .... ...|.+-.++.. +.+.+..+...|+.+|..|+.. ...... .
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-Y 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-H
Confidence 334444556677788888888887655433 1111 112333334443 3345888889999999999883 333222 3
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-HhH
Q 012413 340 SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-KNR 418 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~ 418 (464)
..+.++.++..+.+....++..+..++-.++. ...-....+.++.++++.++.++..+...+........ ...
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 34588999999998888887777766665553 11113467788889999999999998777766654332 111
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..-.-.+.++.++....+.+.+||..|..++..+.+
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 111124677888888888899999999999887654
No 216
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=18 Score=39.92 Aligned_cols=279 Identities=13% Similarity=0.026 Sum_probs=159.2
Q ss_pred chHHHHHHHHhcC-C-------CCHHHHHHHHHHHHHHhc--cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 175 LQPTVKICIDGLQ-S-------SSVAIKRSAAAKLRLLAK--NRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALL 244 (464)
Q Consensus 175 ~~~~v~~Lv~~L~-s-------~~~~vr~~A~~~L~~La~--~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~ 244 (464)
..+.++.++.-|. + .++.-.+.|++.+.++.. ..+.....+++.=.++.++..++++.--++..||..+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 4567777777772 1 244556677777777654 22222233445556777888889988899999999999
Q ss_pred HhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHhhcCChhhHHHHH
Q 012413 245 NLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLLIYGSSRGKKDAL 322 (464)
Q Consensus 245 ~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL~~~~~~v~~~A~ 322 (464)
.+.. +-+....-..+.+....+|++.+-.++..|+.||.-+-.+.+....+.+ .+.++.|+.|-+.-+.++.....
T Consensus 486 ~~ee--Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 486 TIEE--DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHHH--hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 9843 3333333344667778888898899999999999888776544333322 23344444443333433333333
Q ss_pred HHHH-HHhc--C---cchHHHHHHcCCHHHHHHhhcCC---C---HHHHHHHHHHHHHHhC---CHhhHHHHH---hcCc
Q 012413 323 TTLY-KLCS--L---KQNKERAVSAGAVRPLVGMLAGQ---G---EGMAEKAMVVLSLLAG---IAEGREAIV---EENG 384 (464)
Q Consensus 323 ~aL~-nL~~--~---~~~~~~iv~~g~v~~Lv~lL~~~---~---~~v~~~A~~aL~nLa~---~~~~~~~i~---~~g~ 384 (464)
..+- ..+. . ++....+++ .-+.....++..+ . .+=+..|.+.|..+.. +-+++..+. +...
T Consensus 564 e~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 564 ESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2221 1111 0 111111121 1233344444332 1 1225556666665542 223333332 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcCCCC
Q 012413 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 385 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~~~~~~ 458 (464)
.|.+--.+++.-.+.-..|+..|-+.+-...+.-..+ =|+.+.|.+++.+.. ..--+.++-+|.++--+|+-
T Consensus 643 ypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pim--wgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 643 YPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIM--WGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhh--hHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence 5555566677778888899998887765433222222 245566666666665 36677888899988877743
No 217
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=1.7 Score=46.05 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=82.7
Q ss_pred cCcHHHHHHH-HccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHH
Q 012413 259 AGAIKSLVYV-LKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKE 336 (464)
Q Consensus 259 ~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~ 336 (464)
.|+|..|+.. ..+++.++|+.|..+|+.+|.. +...++..+++|.. .+..||...+-+|+-.|.....+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec--------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 4566666665 6778999999999999987654 34467778888865 488888888888888777543221
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CHhhHHHHHhcCcHHHHHHHHhcC
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG--IAEGREAIVEENGIAALVEAIEDG 395 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~ 395 (464)
++..|-.++.+...-|++.|+.+++.+.. +++.-..+ .+.++.+.+++.+.
T Consensus 622 ------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 622 ------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred ------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhh
Confidence 45566667778888889999999998873 23221111 24455566666543
No 218
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.37 E-value=2.2 Score=44.47 Aligned_cols=153 Identities=14% Similarity=0.076 Sum_probs=99.2
Q ss_pred cCChHHHHHHh----hcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 300 CGAIPPLVSLL----IYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLV-GMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 300 ~g~i~~Li~lL----~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv-~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
.|.+...+..+ .+++..++..|++.|+|.+.. +..+...... .+..++ .+.+..+.+|+-+++.+|..+....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 44444444333 456778999999999999985 4443333332 333333 4445556889999999999887533
Q ss_pred hhHHHH-HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHH
Q 012413 374 EGREAI-VEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVR--EGGIPPLVALSQTGSVRAKHKAETLL 449 (464)
Q Consensus 374 ~~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL 449 (464)
.+.... .--.+.-.+..+..+.++++|..|...++.|+... ...+..+.+ .+...+|+-.+++.+|.+-..+...+
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHH
Confidence 222111 11234556777788899999999999999988642 223334443 34556777778889998888777777
Q ss_pred HHhh
Q 012413 450 GYLR 453 (464)
Q Consensus 450 ~~L~ 453 (464)
+.+.
T Consensus 412 ~~c~ 415 (533)
T KOG2032|consen 412 RTCY 415 (533)
T ss_pred HhcC
Confidence 6654
No 219
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.35 E-value=0.6 Score=37.72 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=64.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 012413 344 VRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR 423 (464)
Q Consensus 344 v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 423 (464)
+...+..+.++...+|.+++..|+.|..... ...+...+++..++..|++++.-+-.+|+.+|..|+...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~------- 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD------- 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------
Confidence 4556777888999999999999999996544 22233357788889999999999999999999999976543
Q ss_pred cCChHHHHHhhhcC
Q 012413 424 EGGIPPLVALSQTG 437 (464)
Q Consensus 424 ~g~i~~Lv~lL~s~ 437 (464)
.+++.|++...+.
T Consensus 77 -~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 77 -EVLPILLDEYADP 89 (92)
T ss_pred -HHHHHHHHHHhCc
Confidence 3566666655443
No 220
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=91.34 E-value=12 Score=36.96 Aligned_cols=196 Identities=12% Similarity=0.084 Sum_probs=137.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-----cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-----SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN 251 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-----~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~ 251 (464)
+++..++..+...+-+.|..++.+..++-+-.-..|...++ ...+..|+.--.. .+++-..+...|....+++.
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe~ 157 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHEF 157 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhHH
Confidence 46666788888888888888887776665442222222111 2233333333111 37777777777888888888
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-cccchhhhhccC---ChHH-HHHHhhcCChhhHHHHHHHHH
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLAL-IEENKSSIGACG---AIPP-LVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g---~i~~-Li~lL~~~~~~v~~~A~~aL~ 326 (464)
..+.+.............+.++-++..-|..+...+-. |......+.... .++. --.++.+++--+++.+..+|+
T Consensus 158 LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg 237 (342)
T KOG1566|consen 158 LAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLG 237 (342)
T ss_pred HHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHH
Confidence 88888888889999999999988888888888877543 322222222221 2344 556788899999999999999
Q ss_pred HHhcCcchHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 327 KLCSLKQNKERAVS----AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 327 nL~~~~~~~~~iv~----~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
.+-....|...+.. ...+..+..+|+++...+|.+|..+-.-...++
T Consensus 238 ~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 238 ELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99887776655532 467889999999999999999999888887654
No 221
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.32 E-value=3.6 Score=44.62 Aligned_cols=199 Identities=18% Similarity=0.142 Sum_probs=113.0
Q ss_pred CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhc
Q 012413 172 PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 172 ~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~----~~~~v~~~A~~aL~~La 247 (464)
..+..+.+..+.+++.+..... ..|+..+..+...-.. -....+..+..++++ ..+.++..|..+++.+.
T Consensus 352 ~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~-----Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 352 QAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARY-----PTEEILKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred hcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhc-----CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 3455778888888887654221 1223333222221000 022456667777775 45678888888888886
Q ss_pred C----CCchHHHHHhcCcHHHHHHHHc----cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh-cC--Chh
Q 012413 248 L----HENNKTLITNAGAIKSLVYVLK----TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI-YG--SSR 316 (464)
Q Consensus 248 ~----~~~~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~-~~--~~~ 316 (464)
. +.+..........++.|...|. ..+.+-+...+.+|+|+ +....++.|...+. +. +..
T Consensus 426 ~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----------g~~~~i~~l~~~l~~~~~~~~~ 495 (574)
T smart00638 426 RRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----------GHPSSIKVLEPYLEGAEPLSTF 495 (574)
T ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----------CChhHHHHHHHhcCCCCCCCHH
Confidence 4 2221111122336666666554 35666778889999997 33334566666655 22 567
Q ss_pred hHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh
Q 012413 317 GKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ--GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 317 v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
+|..|+++|..++. .+.. +-+.|+.++.+. +.++|..|..+|...- |. ...+..+.+.+.
T Consensus 496 iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~--P~-------~~~l~~ia~~l~ 558 (574)
T smart00638 496 IRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLMETK--PS-------VALLQRIAELLN 558 (574)
T ss_pred HHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHhcC--CC-------HHHHHHHHHHHh
Confidence 99999999998875 3322 445566666543 4666776666555331 11 234556666665
Q ss_pred c-CCHHHHHHH
Q 012413 394 D-GSVKGKEFA 403 (464)
Q Consensus 394 ~-~~~~v~~~A 403 (464)
. ++..|....
T Consensus 559 ~E~~~QV~sfv 569 (574)
T smart00638 559 KEPNLQVASFV 569 (574)
T ss_pred hcCcHHHHHHh
Confidence 3 455555443
No 222
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=91.26 E-value=19 Score=37.03 Aligned_cols=252 Identities=13% Similarity=0.061 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcC-CCchHH-HHHhcCc
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSL-HENNKT-LITNAGA 261 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~-~~~~~~-~i~~~g~ 261 (464)
++.+|...+.++|.|+..+++..+....+......+++.+.. .-.++...=...|.-+.. +.+.|. .+.+.+|
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 456889999999999999999999999988888888776533 112334444444444433 445554 5667999
Q ss_pred HHHHHHHHccC---------C------HHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc---------CChh-
Q 012413 262 IKSLVYVLKTG---------T------ETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY---------GSSR- 316 (464)
Q Consensus 262 i~~Lv~lL~~~---------~------~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~---------~~~~- 316 (464)
++.+.+.|.+. + ......++.+++|+..+...-...-.......+-.++.+ .+.+
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~el 268 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEEL 268 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999752 1 123456677778887664221111111111122222211 0111
Q ss_pred ----------hHHHHHHHHHHHhcCcchHHHHHH--cCCHHHHHHhhcCC---------CHHHHHHHHHHHHHHhCCHhh
Q 012413 317 ----------GKKDALTTLYKLCSLKQNKERAVS--AGAVRPLVGMLAGQ---------GEGMAEKAMVVLSLLAGIAEG 375 (464)
Q Consensus 317 ----------v~~~A~~aL~nL~~~~~~~~~iv~--~g~v~~Lv~lL~~~---------~~~v~~~A~~aL~nLa~~~~~ 375 (464)
+....+.++...--+...-+.+-. ..-...+..+|... ..+.....+.+|..+|.....
T Consensus 269 hshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~ 348 (532)
T KOG4464|consen 269 HSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRV 348 (532)
T ss_pred hhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHH
Confidence 222222222111111112222221 11233344444211 123455677888888866555
Q ss_pred HHHHHhcCcHHHHHH-----------------HHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCC
Q 012413 376 REAIVEENGIAALVE-----------------AIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGS 438 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~-----------------lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~ 438 (464)
........++|+|.+ +|...+..++..|+..|.-||..+ ++.+++...-++
T Consensus 349 ~Rkylr~qVLPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKes------------V~rmIKYtGyGn 416 (532)
T KOG4464|consen 349 MRKYLRQQVLPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKES------------VNRMIKYTGYGN 416 (532)
T ss_pred HHHHHHHhcCCchhhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcc------------hhhhhhhccccc
Confidence 444444455655554 444455667777888888888654 455566665665
Q ss_pred HHHHHHHHHHHHHh
Q 012413 439 VRAKHKAETLLGYL 452 (464)
Q Consensus 439 ~~v~~~A~~aL~~L 452 (464)
.----++-++|...
T Consensus 417 aAGllA~rGll~~~ 430 (532)
T KOG4464|consen 417 AAGLLAARGLLAGG 430 (532)
T ss_pred HHHHHHhhhhhccC
Confidence 54444444444433
No 223
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=4.3 Score=45.63 Aligned_cols=160 Identities=11% Similarity=0.111 Sum_probs=99.5
Q ss_pred HHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--------CCHHHHHHHHHHHHHhcC---CCchHHHHHhcCcHHH
Q 012413 196 SAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--------SDPWTQEHSVTALLNLSL---HENNKTLITNAGAIKS 264 (464)
Q Consensus 196 ~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--------~~~~v~~~A~~aL~~La~---~~~~~~~i~~~g~i~~ 264 (464)
+|...|..++.... ++.+ .|.++.+++.|.+ .++.-+.-|++++++|+. .+..-+-..+.=.++.
T Consensus 391 Aa~~~l~~~~~KR~--ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRG--KETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHHhcc--hhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 45666655554421 1111 3667777777762 457778889999998874 1222223345556778
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhh-cCChhhHHHHHHHHHHHhcCcchH-HHHHH-
Q 012413 265 LVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLI-YGSSRGKKDALTTLYKLCSLKQNK-ERAVS- 340 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~-~~~~~v~~~A~~aL~nL~~~~~~~-~~iv~- 340 (464)
+...++++.--+|..|||++...+.-+ .... .-..++.....+|. +.+..|+-.|+-||..+..+.+.. +.+..
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d~~--~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFKDPN--NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 888889999999999999999998321 1111 11224555566666 678889999999999998865433 33332
Q ss_pred -cCCHHHHHHhhcCCCHHHHHH
Q 012413 341 -AGAVRPLVGMLAGQGEGMAEK 361 (464)
Q Consensus 341 -~g~v~~Lv~lL~~~~~~v~~~ 361 (464)
-+.++.|+.+.+..+-+....
T Consensus 545 vp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred hhHHHHHHHHHHHhcchhHHHH
Confidence 224444555555544443333
No 224
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.91 E-value=0.98 Score=36.49 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
..+..+..|.++.+.+|..|+..|+.+..... ...+...+++..++..|+++|+-|-.+|..+|..|+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 45566778899999999999999999988865 1122235778888899999999999999999999985
No 225
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.36 E-value=3.1 Score=45.17 Aligned_cols=252 Identities=17% Similarity=0.145 Sum_probs=148.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHH
Q 012413 184 DGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIK 263 (464)
Q Consensus 184 ~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~ 263 (464)
..+.-.+.+.+..=..-|.... +...+.+.....++.|+..+...+ --...+..|..+.+.-+... ...+.+|
T Consensus 261 eel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p 333 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIP 333 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhh
Confidence 3444445555444444443311 222344555566666666665544 11111122222222111001 4567899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcC
Q 012413 264 SLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAG 342 (464)
Q Consensus 264 ~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g 342 (464)
.|+++++..|..+|..-+.-+-+...+ ....+++...+|.+..-+.+.++.+|..++.++..|+. -.++ .+...
T Consensus 334 ~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~---~Ln~E 408 (690)
T KOG1243|consen 334 VLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR---NLNGE 408 (690)
T ss_pred hHHHHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---hhcHH
Confidence 999999999999997665555543322 33456677789999999999999999999999988866 1211 11111
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcC-cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHH
Q 012413 343 AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEEN-GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLL 421 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 421 (464)
.+..+-.+-.+.+..++-+...||+.++.+... ..+.+ .+.+....++++-...|..+.++++.....-+...
T Consensus 409 llr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~--- 482 (690)
T KOG1243|consen 409 LLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE--- 482 (690)
T ss_pred HHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh---
Confidence 333333333456677788888888888754211 11333 34555556777666678888888877664321111
Q ss_pred HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 422 VREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 422 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
+...+++.+.-+..+.+..+|..|..++..+-
T Consensus 483 va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 483 VANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 12346777777777788888888888776654
No 226
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.31 E-value=13 Score=40.73 Aligned_cols=108 Identities=13% Similarity=0.041 Sum_probs=78.3
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcCHHhH
Q 012413 340 SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI-EDGSVKGKEFAVLTLLQLCAESVKNR 418 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~~L~~~~~~~~ 418 (464)
...++|.|..-+++.+..+++.++..+..++..-+ ...+..-+++.|..+. ++.+..++.+++.|++.+.. ..
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~l 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RL 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HH
Confidence 34478899999999999999999999999986443 3344455666666664 36789999999999999982 22
Q ss_pred HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 419 GLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
+...-...+.++.+..+..++.+..+...+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 22222234566666677788988888887776654
No 227
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.25 E-value=9.2 Score=38.48 Aligned_cols=158 Identities=15% Similarity=0.079 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cCchhHHHHHhc-C-ChHHHHHhhcCC-----C--------HHHHHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAK-NRSDNRVLIGES-G-AVPALVPLLKCS-----D--------PWTQEHSV 240 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~-~~~~~r~~i~~~-g-~i~~Ll~lL~~~-----~--------~~v~~~A~ 240 (464)
+-++.+...|.+........+++.|..+.. +.......+.+. + -.+.+..++... . +.+|...+
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 447777889999888888899999999988 766666666542 2 234555555321 1 28888888
Q ss_pred HHHHHhcCC--CchHHHHH-hcCcHHHHHHHHccCCHHHHHHHHHHHHH-hcccc----cchhhhhccCChHHHHHHhhc
Q 012413 241 TALLNLSLH--ENNKTLIT-NAGAIKSLVYVLKTGTETSKQNAACALMS-LALIE----ENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 241 ~aL~~La~~--~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~----~~~~~i~~~g~i~~Li~lL~~ 312 (464)
..+..+... +..+..+. ..+.+..+.+-|..++.++....+.+|.. +..++ ..|..+.....+..|..+...
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 888877663 45565555 46678899999999999999999999985 44442 346666677788899998877
Q ss_pred CCh----hhHHHHHHHHHHHhcCcch
Q 012413 313 GSS----RGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 313 ~~~----~v~~~A~~aL~nL~~~~~~ 334 (464)
.++ .++..+-..|..+|.++..
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCCc
Confidence 776 8888889999998886654
No 228
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.07 E-value=19 Score=38.56 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=77.2
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+.+.+..++..+.+.+..||..+++.|+.+...-.+. ...+-.|.+..|.+-+-+..+.||..|+.+|+.+-....+-.
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 3678899999999999999999999998887653332 233445777788877778889999999999998865332211
Q ss_pred HHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccc
Q 012413 255 LITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIE 291 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~ 291 (464)
. .....|+.+++. ++.++|..| |.|+..+.
T Consensus 168 n----~~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 168 N----RIVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred H----HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 1 123356666654 567888764 56664443
No 229
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.45 E-value=2.9 Score=39.34 Aligned_cols=148 Identities=17% Similarity=0.147 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh---cC--CCHHHHHHHHHHHHHhcCCC--chHHHHHhcCcH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL---KC--SDPWTQEHSVTALLNLSLHE--NNKTLITNAGAI 262 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL---~~--~~~~v~~~A~~aL~~La~~~--~~~~~i~~~g~i 262 (464)
...-...|+..|.-++.+ |+.+..++++..--.|...| .+ ....+|..++.+++.|.+++ +....+.....|
T Consensus 113 ~snRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 113 ESNRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred hhhHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 334456777788888888 77777777765433333433 22 45678999999999999864 445566678899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc----cCCh----HHHHH-HhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA----CGAI----PPLVS-LLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~----~g~i----~~Li~-lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
|.+++.+..+++..+..|+.++..+-.++.+-+.+.. --++ ..++. +...+.....+.+.++-..|+..+.
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence 9999999999999999999999887666544332221 1222 22322 2333566777778887777777666
Q ss_pred hHHHH
Q 012413 334 NKERA 338 (464)
Q Consensus 334 ~~~~i 338 (464)
.+..+
T Consensus 272 aR~lL 276 (315)
T COG5209 272 ARALL 276 (315)
T ss_pred HHHHH
Confidence 55544
No 230
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.42 E-value=17 Score=34.53 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=82.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHH
Q 012413 185 GLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKS 264 (464)
Q Consensus 185 ~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~ 264 (464)
.-+..++..+...+..|..++.++..+. .-++..|..+.+.+..+.+..+...+..+-...+- .. +.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f----~~L~~ 78 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF----PFLQP 78 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH----HHHHH
Confidence 4456788999999999999998841221 23455566667777777766777777766543221 10 23333
Q ss_pred HHHHH--------c--cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhc
Q 012413 265 LVYVL--------K--TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 265 Lv~lL--------~--~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~ 330 (464)
++..+ . +...+.....+.++..++..... .-...++.+..+| .+.++.++..++.+|..||.
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 33330 1 11334555556777777765332 1122477888888 67788899999999999983
No 231
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=1.9 Score=42.32 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=99.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...+...+..|.+.++..+..++..++.|+.-.++...... ...|..+++-+++....|-+.|+.++..|...-++.-.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788999999999999999999988866554333322 24667777778888889999999999998764332211
Q ss_pred HHhcCcHHHHHH-HHcc---CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 256 ITNAGAIKSLVY-VLKT---GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 256 i~~~g~i~~Lv~-lL~~---~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
+ .+..++. ||.. ++.-+++.|-.+|..|..+-. ..-+++.|+..+.+.++.++..++.+..+.
T Consensus 166 --~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 --Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred --H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 1 2333333 3332 456789999999998865521 123577888888888999998888765553
No 232
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.73 E-value=1.6 Score=41.49 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhcccccchhhhhccCChHHHHH-------Hhhc-CChhhHHHHHHHHHHHhcCcchHH--HHHHcCCH
Q 012413 275 TSKQNAACALMSLALIEENKSSIGACGAIPPLVS-------LLIY-GSSRGKKDALTTLYKLCSLKQNKE--RAVSAGAV 344 (464)
Q Consensus 275 ~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~-------lL~~-~~~~v~~~A~~aL~nL~~~~~~~~--~iv~~g~v 344 (464)
.-|..|+.+|+.|+..+.|.+.+...+-+..+-+ +|.. +++..|+.|...|.+|+..++... .-.+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4588999999999999999999988876665443 3333 588899999999999999665433 33468899
Q ss_pred HHHHHhhcCCC
Q 012413 345 RPLVGMLAGQG 355 (464)
Q Consensus 345 ~~Lv~lL~~~~ 355 (464)
..|+.++.+..
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999997643
No 233
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.70 E-value=3.5 Score=40.56 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=92.9
Q ss_pred ChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHH
Q 012413 302 AIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAI 379 (464)
Q Consensus 302 ~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i 379 (464)
++...+..|.+.+...+-.++..+..|+. +++....+..+ .+-.+++-++.....|-..|+.+++.|... ......
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34556667777778888888888888887 55555444443 667778888888899999999999988743 222222
Q ss_pred HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 012413 380 VEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGY 451 (464)
Q Consensus 380 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~ 451 (464)
.-.+.+-.|+.--..++.-+++.|-.+|-.+..+-.. ..+++.|+..+++.++.++..++...-+
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 1122222222222234566899999999998865322 2356778888888888888887755433
No 234
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.45 E-value=23 Score=33.66 Aligned_cols=137 Identities=22% Similarity=0.189 Sum_probs=84.4
Q ss_pred hHHHHH-hhcCCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 221 VPALVP-LLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 221 i~~Ll~-lL~~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
++.|+. +-+..+++++...+.+|..++.+. ..... .+..|..+...+....+.-+...+..+-...+ +. .
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~--f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RH--F 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hH--H
Confidence 344544 445589999999999999999887 44333 45556666777777665555555555432211 10 0
Q ss_pred ccCChHHHHHH--hh------cC--ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHH
Q 012413 299 ACGAIPPLVSL--LI------YG--SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLS 367 (464)
Q Consensus 299 ~~g~i~~Li~l--L~------~~--~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~ 367 (464)
+.+..++.. ++ ++ ..+.....+.++..+|...++ .....++.+..+| .+.++.++..++.+|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 223333333 01 11 223444445677788875544 2223667888888 7778888999999999
Q ss_pred HHhC
Q 012413 368 LLAG 371 (464)
Q Consensus 368 nLa~ 371 (464)
.|+.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 9994
No 235
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.98 E-value=18 Score=37.66 Aligned_cols=144 Identities=15% Similarity=0.024 Sum_probs=91.7
Q ss_pred hHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHH-HHHHHHhCCHhhHHHHH
Q 012413 303 IPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAM-VVLSLLAGIAEGREAIV 380 (464)
Q Consensus 303 i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~-~aL~nLa~~~~~~~~i~ 380 (464)
+-.+++.|.+ .+...++-|++.|..++.+...+-.=-.+-++..+++.-.+.+.++...|. .++.-++.+...
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~----- 405 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL----- 405 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-----
Confidence 4456677777 688899999999999998665432212234667777777777776655554 445555544332
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
-.|..+..++...+...-..++.++-.|+..-..--..-.--.+.|.++....+.+..||+.|.-.|-.+.
T Consensus 406 --~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 406 --QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred --hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 23444555555566666666666777766432111111112467899999999999999999988776554
No 236
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=87.88 E-value=3.7 Score=44.58 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=122.4
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
.++....+|.|+..+.-++. -...+..+..+...-+... ...+.+|.|++|+...+..+|..-+.=+-+... ..
T Consensus 288 ~i~~~kvlp~Ll~~~~~g~a--~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~L 361 (690)
T KOG1243|consen 288 EIIASKVLPILLAALEFGDA--ASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HL 361 (690)
T ss_pred HHHHHHHHHHHHHHhhcccc--chhhhhHHHHhhhhccccc--cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh--hc
Confidence 34445566777776666651 1111222222222211111 556789999999999999999765554443332 23
Q ss_pred HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 335 KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
-..+++...+|.+..-+.+.++.+++..+.++..|+.--..+ .+....+..+-.+-.+.+..+|.+...||+.++.+.
T Consensus 362 t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l 439 (690)
T KOG1243|consen 362 TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL 439 (690)
T ss_pred CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccccc
Confidence 345677779999999999999999999999999988421111 222223444444444677889999999999998763
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
.. ..+..-.+..+.+.++++-...|..+.+++....++-..
T Consensus 440 ~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 440 AA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred ch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence 21 223344556666677777778888888888776655443
No 237
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.63 E-value=9.8 Score=35.89 Aligned_cols=145 Identities=18% Similarity=0.085 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcccccchhhhhccCChHHHHHHhh---c--CChhhHHHHHHHHHHHhcCc--chHHHHHHcCCHHHHHH
Q 012413 277 KQNAACALMSLALIEENKSSIGACGAIPPLVSLLI---Y--GSSRGKKDALTTLYKLCSLK--QNKERAVSAGAVRPLVG 349 (464)
Q Consensus 277 ~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~---~--~~~~v~~~A~~aL~nL~~~~--~~~~~iv~~g~v~~Lv~ 349 (464)
..+|+..|--++.+++.|..+.++..--.|...|. + .....|..++++++.|.+++ .....+....++|.++.
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 34666777778899999999988764223333333 2 24568889999999999954 34455567889999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh----cCc----HHHHHHH-HhcCCHHHHHHHHHHHHHHhhcCHHhHHH
Q 012413 350 MLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE----ENG----IAALVEA-IEDGSVKGKEFAVLTLLQLCAESVKNRGL 420 (464)
Q Consensus 350 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~----~g~----i~~Lv~l-L~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 420 (464)
++....+-.+.-|+.++..+-+++.+-+.+.. --+ ...++.. ....+.++-..+.++-..|+. .+..|..
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~aR~l 275 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPHARAL 275 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHhHHHH
Confidence 99887777777888888888877766554433 222 3333333 334677888888888888874 4555554
Q ss_pred HH
Q 012413 421 LV 422 (464)
Q Consensus 421 i~ 422 (464)
+.
T Consensus 276 L~ 277 (315)
T COG5209 276 LS 277 (315)
T ss_pred Hh
Confidence 43
No 238
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=87.44 E-value=33 Score=34.99 Aligned_cols=232 Identities=19% Similarity=0.127 Sum_probs=129.0
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHH-hcccccchhh
Q 012413 220 AVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMS-LALIEENKSS 296 (464)
Q Consensus 220 ~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~-Ls~~~~~~~~ 296 (464)
-|..++.=|+. ....+|+.++.-|+.-+.++..+..+...|.+..+++.+.+. +..+...++.++.. ++.+...-..
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 45566666653 556789999999999999999999999999999999999554 33255444445544 4444334444
Q ss_pred hhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh---c------CCCHHHHHHHHHHH
Q 012413 297 IGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML---A------GQGEGMAEKAMVVL 366 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL---~------~~~~~v~~~A~~aL 366 (464)
+.+.+....++.++.-. ...+..... .....+..++. .+.+..+...+ . ......+.-|..+|
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~l 174 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLAL 174 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHHH
Confidence 44555566668887711 000000000 00000111111 11111111222 0 11122355566666
Q ss_pred HHHhC---------------CHhhHHHHHhcCcHHHHHHHHhc----C------------CHHHHHHHHHHHHHHhhcCH
Q 012413 367 SLLAG---------------IAEGREAIVEENGIAALVEAIED----G------------SVKGKEFAVLTLLQLCAESV 415 (464)
Q Consensus 367 ~nLa~---------------~~~~~~~i~~~g~i~~Lv~lL~~----~------------~~~v~~~A~~aL~~L~~~~~ 415 (464)
..++. .+-.++.+.+.|++..+++.+.+ . +...-..+..+|-+.+..++
T Consensus 175 e~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~ 254 (361)
T PF07814_consen 175 ESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE 254 (361)
T ss_pred HHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc
Confidence 65530 12347778888999999999862 1 11234468888888887777
Q ss_pred HhHHHHHHc--CChHHHH-HhhhcCC---HHHHHHHHHHHHHhhcCCCC
Q 012413 416 KNRGLLVRE--GGIPPLV-ALSQTGS---VRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 416 ~~~~~i~~~--g~i~~Lv-~lL~s~~---~~v~~~A~~aL~~L~~~~~~ 458 (464)
.++..+... +.+..+. .++..-. ......+.+.+-|++-+.++
T Consensus 255 ~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~ 303 (361)
T PF07814_consen 255 ENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS 303 (361)
T ss_pred cchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence 777765553 3333333 3333322 24455667777777765544
No 239
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=86.98 E-value=26 Score=33.73 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=58.8
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhh--hccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhc-C
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI--GACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCS-L 331 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i--~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~-~ 331 (464)
.+..+.|+|+++++.++..+-...--++. ++....+ +-.|-++.|-+++.++ +..+|..|+.+|..++. +
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~t-----E~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~ 144 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFIT-----EDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEG 144 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhH-----hHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC
Confidence 45679999999998766521111000000 0111111 2367789999999987 66799999999999998 5
Q ss_pred cchHHHHHHcCCHHHHHHh-hcCCCHH
Q 012413 332 KQNKERAVSAGAVRPLVGM-LAGQGEG 357 (464)
Q Consensus 332 ~~~~~~iv~~g~v~~Lv~l-L~~~~~~ 357 (464)
+..|+.+++ .+..++.. +...+..
T Consensus 145 ~~~Re~vi~--~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 145 PISREEVIQ--YFRELLNYFLERNPSF 169 (249)
T ss_pred CCCHHHHHH--HHHHHHHHHhccCchH
Confidence 566777776 45555554 4444343
No 240
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.90 E-value=36 Score=34.17 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=111.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcC-CC-chHHHHHh--cCcHHHHHHHHccC-----C--------HHHHHHHHHH
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSL-HE-NNKTLITN--AGAIKSLVYVLKTG-----T--------ETSKQNAACA 283 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~-~~~~~i~~--~g~i~~Lv~lL~~~-----~--------~~v~~~a~~a 283 (464)
++.+...|....+.+...++..|..+.. +. .....+.. .-..+.|.+++... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888899999889999999999999988 54 44444443 33455666666431 1 2788888888
Q ss_pred HHHhccc--ccchhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHHH-HhcCc----chHHHHHHcCCHHHHHHhhcCCC
Q 012413 284 LMSLALI--EENKSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYK-LCSLK----QNKERAVSAGAVRPLVGMLAGQG 355 (464)
Q Consensus 284 L~~Ls~~--~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~n-L~~~~----~~~~~iv~~g~v~~Lv~lL~~~~ 355 (464)
+..+... +..+..+.+ .+.+..+.+-|..++.++....+.+|.. +...+ ..+-.+..+..+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 7776654 455666655 6667888888888888999999999985 44433 24455566778889999887777
Q ss_pred H----HHHHHHHHHHHHHhCCH
Q 012413 356 E----GMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 356 ~----~v~~~A~~aL~nLa~~~ 373 (464)
+ .+...+-..|..+|..+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 7 78888999999998644
No 241
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.72 E-value=50 Score=35.61 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=69.9
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHH
Q 012413 259 AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERA 338 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~i 338 (464)
+|.+..+++-+.+++..+|..++..|+-++..-.--+...-.|.+..|.+.+-+..+.||+.|+.+|+.+-....+-+..
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 46778888888899999999999999988654222223444566777778888889999999999999886543332222
Q ss_pred HHcCCHHHHHHhhc-CCCHHHHHHHH
Q 012413 339 VSAGAVRPLVGMLA-GQGEGMAEKAM 363 (464)
Q Consensus 339 v~~g~v~~Lv~lL~-~~~~~v~~~A~ 363 (464)
.+-.|+.+++ ++..+|+..|+
T Consensus 170 ----~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 170 ----IVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred ----HHHHHHHHHhcCcHHHHHHHHH
Confidence 2235666665 44556666544
No 242
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=85.78 E-value=13 Score=40.35 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=105.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH---hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhc
Q 012413 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG---ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNA 259 (464)
Q Consensus 183 v~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~---~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~ 259 (464)
+..+..-.++.+.-|+.+|+.+..|..-+-..+- ....+..++..+. .++..+..++++|.|+-.++-+++.+...
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4444555677788899999999888655433332 2335666666666 67888999999999999988777776642
Q ss_pred --CcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhcC-----ChhhHHHHHHHHHHHhc
Q 012413 260 --GAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIYG-----SSRGKKDALTTLYKLCS 330 (464)
Q Consensus 260 --g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~~-----~~~v~~~A~~aL~nL~~ 330 (464)
-.+..++..=..++..++...+....|.+.. ..+- +.|+.+.+..++... +-+.....+-||++|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 2233333333334566766666666665432 2211 145556555555431 33455667889999999
Q ss_pred CcchHHHHHHcCCHHHHHHhhcC
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAG 353 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~ 353 (464)
.+....++...-.+..+..-+++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHH
Confidence 88887777766666666666654
No 243
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.49 E-value=15 Score=40.15 Aligned_cols=176 Identities=16% Similarity=0.066 Sum_probs=107.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcc--cc----cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Ccc-
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSLAL--IE----ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQ- 333 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~--~~----~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~- 333 (464)
-|.|.+-|+-.+..||.+|+..+.++=- ++ +..+.+.+.. +..|.+||.++-+.+|..|..-++.+.. .=+
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3556667778899999999999998642 22 2244444433 7789999999999999888776665533 100
Q ss_pred hHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
.-..++. ..+..++.-+ .+...+|+-.....|-.|..++..-..+- -++++|-..|.+.+..||..+...|..|-.
T Consensus 255 iP~~i~~-~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 255 IPPTILI-DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred cCHHHHH-HHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 0000110 0111222211 34456788888889998888775443332 246677788889999999999999988754
Q ss_pred cCHHhHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 012413 413 ESVKNRGLLVREGGIPPLVALSQTGSVRAKHK 444 (464)
Q Consensus 413 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~ 444 (464)
.. ...++.---...++.-|..++..|.+.
T Consensus 332 vr---a~~f~~I~~~d~~l~~L~~d~~~v~rr 360 (1005)
T KOG1949|consen 332 VR---AAKFWKICPMDHILVRLETDSRPVSRR 360 (1005)
T ss_pred hh---hhhhhccccHHHHHHHHhccccHHHHH
Confidence 31 112333223444555555554444333
No 244
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.17 E-value=2.5 Score=40.13 Aligned_cols=81 Identities=27% Similarity=0.292 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHhcCcchHHHHHHcC-------CHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCHh-hH-HHHHhcCcH
Q 012413 316 RGKKDALTTLYKLCSLKQNKERAVSAG-------AVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIAE-GR-EAIVEENGI 385 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~~~~~~iv~~g-------~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~-~~-~~i~~~g~i 385 (464)
.-++.|+.+|+.|+..+.|.+.++..+ .+..|+.+|... +.-.++.|+..|.+|+..++ .. ..-.+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 358899999999999998888775443 455666666544 45569999999999995443 33 334457899
Q ss_pred HHHHHHHhcCC
Q 012413 386 AALVEAIEDGS 396 (464)
Q Consensus 386 ~~Lv~lL~~~~ 396 (464)
..|+.++.+.+
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999997643
No 245
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.98 E-value=69 Score=35.65 Aligned_cols=217 Identities=13% Similarity=0.055 Sum_probs=114.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
.+.-.+.++.++.++.+|+..-.++..++.-.+..-. +...|.+-.....+..+..|+.+|+.+...
T Consensus 64 e~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvii-----vtsslmkD~t~~~d~yr~~AiR~L~~I~d~-------- 130 (865)
T KOG1078|consen 64 ELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVII-----VTSSLMKDMTGKEDLYRAAAIRALCSIIDG-------- 130 (865)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhh-----hhHHHHhhccCCCcchhHHHHHHHHhhcCc--------
Confidence 3455677888999999999999999999874332111 233344444445667788888888887433
Q ss_pred ccCChHHHHHHhh----cCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH-
Q 012413 299 ACGAIPPLVSLLI----YGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA- 373 (464)
Q Consensus 299 ~~g~i~~Li~lL~----~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~- 373 (464)
|-+...-+.++ +.++.+...|+-.=.+|........+=...+ ......+.+.-+|.+|++.|+.+-.++
T Consensus 131 --~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~ne----iqea~~s~~~m~QyHalglLyqirk~dr 204 (865)
T KOG1078|consen 131 --TMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANE----VQEAVNSDNIMVQYHALGLLYQIRKNDR 204 (865)
T ss_pred --chhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHh----hhhccCcHHHHHHHHHHHHHHHHHhhhH
Confidence 22222222221 2233333222221112211111100000000 001111111223344444444332111
Q ss_pred -----------------hhHH---------HHHh-cCcHHHHHH----HHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHH
Q 012413 374 -----------------EGRE---------AIVE-ENGIAALVE----AIEDGSVKGKEFAVLTLLQLCAESVKNRGLLV 422 (464)
Q Consensus 374 -----------------~~~~---------~i~~-~g~i~~Lv~----lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~ 422 (464)
..+. .+-+ ..+..++.. ++.+...-+...|+.++.+|...... .+
T Consensus 205 la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l- 280 (865)
T KOG1078|consen 205 LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---EL- 280 (865)
T ss_pred HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hc-
Confidence 0000 0001 233334444 44466788899999999999865432 11
Q ss_pred HcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 423 REGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 423 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
...+..|.-++.+..+-+|.+|.+.|..++--.++.
T Consensus 281 -~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 281 -APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred -chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 127888899999999999999999999988755543
No 246
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=84.55 E-value=8.4 Score=31.48 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=55.1
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHH
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACAL 284 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 284 (464)
..+.+..|+..+..+.+-....++..|..+..++.....+.+-|++..|-++-..-++..+...-..+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34667778888888777789999999999999999999999999999988877666776666554444
No 247
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=84.43 E-value=12 Score=33.61 Aligned_cols=111 Identities=22% Similarity=0.174 Sum_probs=72.3
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhc--CChHHHHHhhcC-CCHHHHHHHHHHHHHhcC--
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGES--GAVPALVPLLKC-SDPWTQEHSVTALLNLSL-- 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~--g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~-- 248 (464)
.+...+..+...|++.+++.|..++..+......++ .+.+.+. .-+..|+..|+. +.+.+.+.++.+|..|-.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 345667777888999999999999999988887642 2344332 347788888988 456778888888888743
Q ss_pred --CCchHHHHHh---cCcHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 012413 249 --HENNKTLITN---AGAIKSLVYVLKTGTETSKQNAACALMSLA 288 (464)
Q Consensus 249 --~~~~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls 288 (464)
.++....+.- .+.++.++.+++. ......++.+|..+-
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 2443334332 2344555555554 455566666666654
No 248
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.09 E-value=5 Score=35.15 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=64.0
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~ 248 (464)
+...++..|.+.|++.++.++..|+..|-.+.++. ......+.+.+.+..|+.++.. .++.|+..++..+..-+.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999884 5567778888999999999974 788999999999877663
No 249
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=84.01 E-value=40 Score=32.78 Aligned_cols=210 Identities=13% Similarity=0.061 Sum_probs=124.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchHHHHHhc
Q 012413 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNKTLITNA 259 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~i~~~ 259 (464)
|=..|.++++.+|..|+..|..+...-+.. .....-+..|+..+-+ .|......++.+|..|........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~----- 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP----- 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-----
Confidence 345678899999999999998887664432 1233446666666544 566666666777777775432111
Q ss_pred CcHHHHHH-HHcc-----CCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHhhcC-ChhhHHHHHHHHHHHhc
Q 012413 260 GAIKSLVY-VLKT-----GTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLLIYG-SSRGKKDALTTLYKLCS 330 (464)
Q Consensus 260 g~i~~Lv~-lL~~-----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~ 330 (464)
+....+++ +.+. -....|..+...|..|..+. ...+.+ .+.+..+++++..+ ||+....+...+..+..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 11222222 2222 23467778888887775442 222222 34567777777765 89988888888887766
Q ss_pred CcchHHHHHHcCCHHHHHHhhcC---------C-CH-HH-HHHHHH-HHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCH
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAG---------Q-GE-GM-AEKAMV-VLSLLAGIAEGREAIVEENGIAALVEAIEDGSV 397 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~---------~-~~-~v-~~~A~~-aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 397 (464)
.=+. ....+.+.+.+.. + ++ .+ ++.-.. ....|+.++.. ..-+++.|++-|.+++.
T Consensus 154 ~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 154 EFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSP 222 (262)
T ss_pred hccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCc
Confidence 2221 2233344444421 1 11 11 222222 23333343322 23578999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 012413 398 KGKEFAVLTLLQLCA 412 (464)
Q Consensus 398 ~v~~~A~~aL~~L~~ 412 (464)
.++.-++.+|...+.
T Consensus 223 ~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 223 SVKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 250
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.87 E-value=7.7 Score=33.46 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=63.3
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-hHHHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-NRVLIGESGAVPALVPLLKC---SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-~r~~i~~~g~i~~Ll~lL~~---~~~~v~~~A~~aL~~La~ 248 (464)
+...++..|.+.|+++++.++..|+..|-.+.++... ....+.....+..|+.++.. .++.|+..++..+...+.
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999999998765 66677676888889999875 578999999999988764
No 251
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=83.67 E-value=29 Score=31.73 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=88.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC--chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHE--NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKS 295 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~ 295 (464)
..++.++++..+++..++..|+..|.-+.+.- .. ...+|.|+.|..++++.++..|...+..+... +..-.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP------KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 45677888888999999999999997665310 11 12689999999999999999999999998643 22111
Q ss_pred hhhccCChHHHHHHhhc--CCh--hh---HHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC--------CHHHH
Q 012413 296 SIGACGAIPPLVSLLIY--GSS--RG---KKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ--------GEGMA 359 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~--~~~--~v---~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~--------~~~v~ 359 (464)
.=. ..|+..-.+.-.. ++. .. ...-+..|+.+.. ....+.+++. .|++.+... ...-.
T Consensus 82 ~~~-~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRY-SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHH-HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHH
Confidence 111 1134443333222 111 11 5566777778877 4566777654 444444332 23345
Q ss_pred HHHHHHHHHHhCC
Q 012413 360 EKAMVVLSLLAGI 372 (464)
Q Consensus 360 ~~A~~aL~nLa~~ 372 (464)
.....+..|||..
T Consensus 156 ~~~~Fla~nLA~l 168 (187)
T PF12830_consen 156 DFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHhcC
Confidence 5666677777753
No 252
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.32 E-value=25 Score=38.58 Aligned_cols=149 Identities=9% Similarity=0.046 Sum_probs=94.3
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh----cCCCHHHHHHHHHHHHHhcCCC
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL----KCSDPWTQEHSVTALLNLSLHE 250 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL----~~~~~~v~~~A~~aL~~La~~~ 250 (464)
+++....+.++|.++-+.||-.|..-+..+... .+..+-..-.++.|-... .+...+||......|-.+..+|
T Consensus 218 ~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 218 IQKQFEELYSLLEDPYPMVRSTAILGVCKITSK---FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 357788889999999999999998887665532 333332222222222222 2345688888888898888776
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
..-.. .+ -++|.|=..|.+..+.||..+...|..|=.+... .+.+--....++..|..++..+.+.-+..|.+.+-
T Consensus 295 ~sh~~-le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~--~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 295 LSHPL-LE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA--KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred cchhH-HH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh--hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 54322 22 2566777788899999999999888877322111 11112234456666777776766666666666554
No 253
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=83.22 E-value=11 Score=34.61 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCCchHHHH------H-hc------CcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc----hhhh
Q 012413 235 TQEHSVTALLNLSLHENNKTLI------T-NA------GAIKSLVYVLKTGTETSKQNAACALMSLALIEEN----KSSI 297 (464)
Q Consensus 235 v~~~A~~aL~~La~~~~~~~~i------~-~~------g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~----~~~i 297 (464)
+|..|+.+|..+++.-+.|... . +. ...+.+.-++.++++.+|..|+.+|..|-..... .+.-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 6778888888888763333211 1 11 2344556677889999999999999988654211 0000
Q ss_pred -hccCCh---------------HHHHHHhhcC-ChhhHHHHHHHHHHHhcCc-chH--HHHHHcCCHHHHHHhhcCCCHH
Q 012413 298 -GACGAI---------------PPLVSLLIYG-SSRGKKDALTTLYKLCSLK-QNK--ERAVSAGAVRPLVGMLAGQGEG 357 (464)
Q Consensus 298 -~~~g~i---------------~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~-~~~--~~iv~~g~v~~Lv~lL~~~~~~ 357 (464)
...+.+ ..|+..|..+ +..+....+.+|..|.... -.+ ..++. ..+..+..++.+.+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCc
Confidence 011122 2344455554 7778889999999998844 333 22222 2445555667788999
Q ss_pred HHHHHHHHHHHHhCC
Q 012413 358 MAEKAMVVLSLLAGI 372 (464)
Q Consensus 358 v~~~A~~aL~nLa~~ 372 (464)
++..++.+++.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988753
No 254
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.18 E-value=11 Score=41.20 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY 267 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ 267 (464)
.|+..+..|--+|..+.--+.+. . ..-+|.|+..++ +++|.+|.+|+..|+.++-.-.. . ....-..|.+
T Consensus 908 sd~~lq~aA~l~L~klMClS~~f---c--~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~---~-~de~t~yLyr 978 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEF---C--SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT---T-ADEHTHYLYR 978 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHH---H--HHHHHHHHHHHhhCCCcceeccceeeccccceehhh---h-hHHHHHHHHH
Confidence 68889999988886654322211 1 245788888887 79999999999999988643111 0 1123456778
Q ss_pred HHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 268 VLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 268 lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
-|.+.+..||..+.-++.+|-.. ..+.-.|-.+.++.+|.+++.++..-|-..+..+++-+
T Consensus 979 rL~De~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 979 RLGDEDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HhcchhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 88899999999999999987432 23334678899999999999999998888888887743
No 255
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=83.03 E-value=26 Score=35.88 Aligned_cols=207 Identities=18% Similarity=0.138 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
.++.+++..+...+...++.-..++. ..+..+.++|.. ....+...|..-|..++..+..+..+...+.++.|+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 46667777776666554433222222 344555555543 224566677777777665443322222222222222
Q ss_pred H---------------HHcc-------------CCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhh------
Q 012413 267 Y---------------VLKT-------------GTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLI------ 311 (464)
Q Consensus 267 ~---------------lL~~-------------~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~------ 311 (464)
. +..+ +...-|..|+..|..|+..-+ ....+ ....+-.+|.
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~ 265 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNP 265 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-T
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCC
Confidence 2 1111 112356688888888876521 11111 0122223333
Q ss_pred cCChhhHHHHHHHHHHHhcCcc-------------hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHH
Q 012413 312 YGSSRGKKDALTTLYKLCSLKQ-------------NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREA 378 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~~~-------------~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 378 (464)
+.+..-+..|+..++.|+.... +...+...-++|.|. -=....+-++..|++.+......- ..+.
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~ 343 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQ 343 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHH
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHH
Confidence 2366778889999999977331 234455555666665 111234556777777777766421 1222
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 012413 379 IVEENGIAALVEAIEDGSVKGKEFAVLTL 407 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 407 (464)
+ .++++.++.+|.+++.-|...|+.|+
T Consensus 344 l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 L--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp H--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2 34899999999999999999999875
No 256
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.94 E-value=6.6 Score=33.91 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=62.0
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~ 248 (464)
+...++..|.+.|++.++.++..|+..|-.+.++. ......+.+.+++..|..++.. ..+.|+..++..+..-+.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999884 5566777788899999999887 334589998888877653
No 257
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.76 E-value=15 Score=43.52 Aligned_cols=145 Identities=13% Similarity=0.070 Sum_probs=93.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~ 254 (464)
.+-++.++..|.++...+|-.|++||..+...++... ....+-..+-.-+.+....||+.|+..++.... +++.-.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 4678888999999999999999999999987755422 122333444555667788999999999997654 445433
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
. ....+..-..+....||..+...+..++.....-..+. .....++....++...+++-++.++.++.-
T Consensus 892 q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~--~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 Q-----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV--DMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred H-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH--HHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 3 23345666667888999999999999986532211111 011222222233333366666666666644
No 258
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.74 E-value=15 Score=33.59 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=81.6
Q ss_pred ChHHHHHHhhcCChhhHHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHH
Q 012413 302 AIPPLVSLLIYGSSRGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAI 379 (464)
Q Consensus 302 ~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i 379 (464)
.++.+++++.+.+..++..|+..+.-+.+.. -+- ...+|.|+.+..++++.++..|...+..+. .++..-..=
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3678888999999999999999998764421 000 117899999999999999999999999998 444433332
Q ss_pred HhcCcHHHHHHHHhc--CCHH--H---HHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc
Q 012413 380 VEENGIAALVEAIED--GSVK--G---KEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 380 ~~~g~i~~Lv~lL~~--~~~~--v---~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
..+| +..-.++-.. ++.. . ...-..-|..+...+...|..+ +..|++.+..
T Consensus 84 ~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~ 141 (187)
T PF12830_consen 84 YSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF 141 (187)
T ss_pred HHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence 2233 4433333332 1111 1 4556666777777666777765 5555555544
No 259
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=82.62 E-value=54 Score=32.58 Aligned_cols=221 Identities=14% Similarity=0.062 Sum_probs=145.0
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHh-----cCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITN-----AGAIKSLVYVLKTGTETSKQNAACALMS 286 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~-----~g~i~~Lv~lL~~~~~~v~~~a~~aL~~ 286 (464)
+.+-++|.+..|+..+..-+-+.+..++.+..++-.- -+.+...++ ...+..|+.--.. .+++...+-..|..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 4566789999999999998888899998888888653 233332222 2334444443111 35555555555555
Q ss_pred hcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcC---CHHH-HHHhhcCCCHHHHHH
Q 012413 287 LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAG---AVRP-LVGMLAGQGEGMAEK 361 (464)
Q Consensus 287 Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g---~v~~-Lv~lL~~~~~~v~~~ 361 (464)
-..++.....+....-+......+..++=.+...|..+...+.. ++.....+.... -++. --.++.+.+--.+..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 55666666667777777777777777776777788888877765 544444444322 2233 455667766667899
Q ss_pred HHHHHHHHhCCHhh----HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH---HhHHHHHHcCChHHHHHhh
Q 012413 362 AMVVLSLLAGIAEG----REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV---KNRGLLVREGGIPPLVALS 434 (464)
Q Consensus 362 A~~aL~nLa~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL 434 (464)
+..+|+.+-....+ .+.+-+...+..++.+|++++..+|-.|-...+-..+... .-...+.... +.|++++
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~l 309 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLELL 309 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHHH
Confidence 99999998754333 4444556789999999999999999999999988886532 2233444432 5555555
Q ss_pred hc
Q 012413 435 QT 436 (464)
Q Consensus 435 ~s 436 (464)
..
T Consensus 310 ~~ 311 (342)
T KOG1566|consen 310 HD 311 (342)
T ss_pred HH
Confidence 43
No 260
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=82.46 E-value=21 Score=32.65 Aligned_cols=138 Identities=18% Similarity=0.146 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcc-Cchh----HHHHH-h-----c-CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh--
Q 012413 193 IKRSAAAKLRLLAKN-RSDN----RVLIG-E-----S-GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN-- 258 (464)
Q Consensus 193 vr~~A~~~L~~La~~-~~~~----r~~i~-~-----~-g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~-- 258 (464)
+|..|+.+|..+++. +... +..+. + . .-...+..++.++++.+|..|+.+|..|-.....--..++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677888888888877 2211 11111 1 1 2233444567789999999999999998654311111111
Q ss_pred c---C---------------cHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChH----HHHHHhhcCCh
Q 012413 259 A---G---------------AIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIP----PLVSLLIYGSS 315 (464)
Q Consensus 259 ~---g---------------~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~----~Li~lL~~~~~ 315 (464)
. + .-..|+..|+.+ +..+..+.+.+|..|........ ...|.++ .+..++.+.|+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r--L~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR--LPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh--cCHhHHHHHHHHHHHHHhcCCC
Confidence 1 1 123455566554 67788889999998887643221 1234444 44556677899
Q ss_pred hhHHHHHHHHHHHhcCc
Q 012413 316 RGKKDALTTLYKLCSLK 332 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~ 332 (464)
.++..++.+++.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999887643
No 261
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=81.62 E-value=8.4 Score=33.82 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=64.6
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-NRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~ 248 (464)
+...++..|.+.|.+.++.++..|+..|-.+.++... ....+.+...+..|+.++.. .++.|+..++..+...+.
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999999988653 56677788999999999988 889999999999888763
No 262
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=81.29 E-value=14 Score=33.06 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=78.0
Q ss_pred hHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh
Q 012413 303 IPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE 381 (464)
Q Consensus 303 i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~ 381 (464)
++.|+++|+.+ +..+|+.++++|+.|..-+..+-+.+..+.-..- -............ . ..+.....+...-
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l---~-~~~~~~~~ee~y~ 84 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISL---P-MMGISPSSEEYYP 84 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHH---h-hccCCCchHHHHH
Confidence 56677778776 6889999999999998866555443321110000 0000011111111 1 1111112334444
Q ss_pred cCcHHHHHHHHhcCCHH-HHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 382 ENGIAALVEAIEDGSVK-GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~-v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..++..|+..|++.+-. -...++.++-++...-...+.... ..++|.++..++..++..++.--+-|..|.
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55788888888876532 233566666666532111111111 246899999999877788877666666553
No 263
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=80.34 E-value=14 Score=32.94 Aligned_cols=143 Identities=11% Similarity=0.063 Sum_probs=77.6
Q ss_pred ChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 220 AVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 220 ~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
.++.|+.+|+. .+..+|+++.++|+.|..-+..+.+....+. +.-. -...+......... ...++ ...+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~~l~-~~~~~---~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDISLP-MMGIS---PSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhhHHh-hccCC---CchHHHH
Confidence 45667788877 4689999999999999764444433221110 0000 00001111111110 01111 0122233
Q ss_pred ccCChHHHHHHhhcCCh-hhHHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 299 ACGAIPPLVSLLIYGSS-RGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 299 ~~g~i~~Li~lL~~~~~-~v~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
-..++..|+..|++++- .-...++.++.++.... ..+-.+... .+|.++..++......++....-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34467888888887632 33445667766666432 122333333 8899999998877777777777666654
No 264
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=79.48 E-value=78 Score=32.39 Aligned_cols=216 Identities=13% Similarity=0.024 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHhcCCCchHHHHHhcC---cHHHHHHHHccC--CHHHHHHHHHHHHHhcccccchhhhhccCChHHH
Q 012413 232 DPWTQEHSVTALLNLSLHENNKTLITNAG---AIKSLVYVLKTG--TETSKQNAACALMSLALIEENKSSIGACGAIPPL 306 (464)
Q Consensus 232 ~~~v~~~A~~aL~~La~~~~~~~~i~~~g---~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L 306 (464)
+.++...|+.+|+.+..+++....+-+.- .+...+..|..+ +..+....+|+|..=...+ .+.....+..|
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~----~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP----KIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC----cccchhhHHHH
Confidence 56888999999999988877666555432 345556666544 4567777777776633322 24444456666
Q ss_pred HHHhhc-----CChhhHHHHHHHHHHHhc-CcchHHHHHH--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC----CHh
Q 012413 307 VSLLIY-----GSSRGKKDALTTLYKLCS-LKQNKERAVS--AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG----IAE 374 (464)
Q Consensus 307 i~lL~~-----~~~~v~~~A~~aL~nL~~-~~~~~~~iv~--~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~----~~~ 374 (464)
+..+.. ++..+....+.++.+|.. .++ .|++ .--+|.++..+-+....++..|..++..+.. +..
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~---~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ---QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHH
Confidence 666543 245677788888888876 333 2332 2267888888877778888877666655541 111
Q ss_pred hHHHH---Hh----cC-----cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHH
Q 012413 375 GREAI---VE----EN-----GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAK 442 (464)
Q Consensus 375 ~~~~i---~~----~g-----~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~ 442 (464)
....+ .+ .+ ..+.|..++.+.+......-+|...-+.-.++.....=.-...+........++++.+|
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k 291 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVK 291 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHH
Confidence 12222 11 12 23446666666333333333333322222221111100012344455555667888999
Q ss_pred HHHHHHHHHhhc
Q 012413 443 HKAETLLGYLRE 454 (464)
Q Consensus 443 ~~A~~aL~~L~~ 454 (464)
..|-.+=+.+..
T Consensus 292 ~~A~~aW~~liy 303 (372)
T PF12231_consen 292 IQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHHHHHH
Confidence 988877666654
No 265
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=79.37 E-value=42 Score=34.57 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=94.6
Q ss_pred hHHHHHHhhcCC-hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhc----------CCCHHHHHHHHHHHHHHh-
Q 012413 303 IPPLVSLLIYGS-SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA----------GQGEGMAEKAMVVLSLLA- 370 (464)
Q Consensus 303 i~~Li~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~----------~~~~~v~~~A~~aL~nLa- 370 (464)
...++..|.++- ...+-..+..+.-|++.....+-+....-+..|+.+-. ..+..+..++..||.|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 345566666654 34455666677777776554333333223334433321 224578999999999999
Q ss_pred CCHhhHHHHHhcCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHhhcCHHhHHH-HHHcCChHHHHHhhhcC---C---
Q 012413 371 GIAEGREAIVEENGIAALVEAIEDG-----SVKGKEFAVLTLLQLCAESVKNRGL-LVREGGIPPLVALSQTG---S--- 438 (464)
Q Consensus 371 ~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~A~~aL~~L~~~~~~~~~~-i~~~g~i~~Lv~lL~s~---~--- 438 (464)
.++..+....+...+..+++.+... ...++-.=++.|.-|..-....|.. +.+.+|++.+.+++.+. +
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 5566777888888887777777632 2344555556666666555555554 66789999999999762 1
Q ss_pred ------HHHHHHHHHHHHHhh
Q 012413 439 ------VRAKHKAETLLGYLR 453 (464)
Q Consensus 439 ------~~v~~~A~~aL~~L~ 453 (464)
|.--..|.++|+.+-
T Consensus 207 n~~~l~pqe~n~a~EaLK~~F 227 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFF 227 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 244556777777653
No 266
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.89 E-value=97 Score=38.01 Aligned_cols=228 Identities=13% Similarity=0.052 Sum_probs=121.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccc--hh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEEN--KS 295 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~--~~ 295 (464)
-.+..++..|...+|..+..+..+++.++...+....+. +....+++-|.+ .++-.|.--..+|+.|-++... -.
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a--~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVA--SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 345556667777889999999999999886433222221 234445555544 4555555445555555333111 01
Q ss_pred hhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhh-cCCCH--HHHHHHHHHHH---
Q 012413 296 SIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGML-AGQGE--GMAEKAMVVLS--- 367 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL-~~~~~--~v~~~A~~aL~--- 367 (464)
... ..++..|..+-.+. ++.|+.+++.++.-+... ......+++. .+..+..+| ..+.. ++...--.++.
T Consensus 954 qhl-~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 954 QHL-NTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred hhc-ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 111 22466777777776 558999999999988773 3444333433 333333443 33332 22221111221
Q ss_pred ---HHhC--CH----hh---HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhh
Q 012413 368 ---LLAG--IA----EG---REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQ 435 (464)
Q Consensus 368 ---nLa~--~~----~~---~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 435 (464)
++.. .+ .. ...-.+.-......-++.++++.++..+..+|-++.-..+..- --.-.|..|..++.
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~---n~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV---NLDSLVLQLCSLLS 1108 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc---cHHHHHHHHHHHhc
Confidence 2210 01 11 1222223334444555566789999999999999987765421 11234566666666
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 012413 436 TGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 436 s~~~~v~~~A~~aL~~L~ 453 (464)
+..--.|..+...|+.+.
T Consensus 1109 s~~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLV 1126 (2067)
T ss_pred chhhhhhhhHHhhhhHHh
Confidence 555444444444444443
No 267
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=78.64 E-value=33 Score=33.08 Aligned_cols=40 Identities=28% Similarity=0.217 Sum_probs=26.5
Q ss_pred cCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCHHhHHHH
Q 012413 382 ENGIAALVEAIEDG--SVKGKEFAVLTLLQLCAESVKNRGLL 421 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i 421 (464)
.|-++.|.+++.++ +.-+|..|..+|..++...+..|..+
T Consensus 110 ~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~v 151 (249)
T PF06685_consen 110 DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEV 151 (249)
T ss_pred CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 35677777777654 45667777777777777666655554
No 268
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=76.91 E-value=51 Score=35.97 Aligned_cols=164 Identities=9% Similarity=0.104 Sum_probs=97.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh----cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhcc-
Q 012413 226 PLLKCSDPWTQEHSVTALLNLSLHENNKTLITN----AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGAC- 300 (464)
Q Consensus 226 ~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~- 300 (464)
..+..-.++++-.|+.+|.-+..|...-..+.+ ...+..++..+. .++..+..++++|.|+-.++.++..+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~ 629 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRL 629 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 334444567788888888777776544333332 335555666555 66888999999999998887666655432
Q ss_pred -CChHHHHHHhhcCChhhHHHHHHHHHHHhc--CcchHHHHHHcCCHHHHHHhhcC---C--CHHHHHHHHHHHHHHhCC
Q 012413 301 -GAIPPLVSLLIYGSSRGKKDALTTLYKLCS--LKQNKERAVSAGAVRPLVGMLAG---Q--GEGMAEKAMVVLSLLAGI 372 (464)
Q Consensus 301 -g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~--~~~~~~~iv~~g~v~~Lv~lL~~---~--~~~v~~~A~~aL~nLa~~ 372 (464)
..+..+++.=...+..++.+.+....|++. ...+- +.|+.+.|...+.. + +-+.....+.||++|+..
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 111122222112234455544444444433 22221 14455555554432 1 123456778899999988
Q ss_pred HhhHHHHHhcCcHHHHHHHHhc
Q 012413 373 AEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
+.....+...-.+..++.-+++
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHH
Confidence 8888888877778888888875
No 269
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.70 E-value=14 Score=32.19 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=61.3
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHh
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC------SDPWTQEHSVTALLNL 246 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~------~~~~v~~~A~~aL~~L 246 (464)
+...++..+.+.|++.++.++..|+..|-.+.++- ......+...+++..|+.++.. .++.|+...+..+..-
T Consensus 35 ~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999998875 3466777778899999999953 5689999998888766
Q ss_pred c
Q 012413 247 S 247 (464)
Q Consensus 247 a 247 (464)
+
T Consensus 115 ~ 115 (139)
T cd03567 115 T 115 (139)
T ss_pred H
Confidence 5
No 270
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=76.36 E-value=17 Score=35.60 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=51.1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH--HHHhcCcHH----HHHHHHc--------cCCHHHHHHHHHHH
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT--LITNAGAIK----SLVYVLK--------TGTETSKQNAACAL 284 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~--~i~~~g~i~----~Lv~lL~--------~~~~~v~~~a~~aL 284 (464)
=.+|+++.++++.++.++..++.+|..+..+..... .+.+.|..+ .|..+|. ++...+...+.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468999999999999999999999999987543322 355566444 3444444 34556777888888
Q ss_pred HHhcc
Q 012413 285 MSLAL 289 (464)
Q Consensus 285 ~~Ls~ 289 (464)
..|..
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77754
No 271
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=74.48 E-value=97 Score=30.94 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=97.3
Q ss_pred ChhhHHHHHHHHHHHhc-CcchHHHHHHc-------C----CHHHHHHhhc------CCCHHHHHHHHHHHHHHh-CCHh
Q 012413 314 SSRGKKDALTTLYKLCS-LKQNKERAVSA-------G----AVRPLVGMLA------GQGEGMAEKAMVVLSLLA-GIAE 374 (464)
Q Consensus 314 ~~~v~~~A~~aL~nL~~-~~~~~~~iv~~-------g----~v~~Lv~lL~------~~~~~v~~~A~~aL~nLa-~~~~ 374 (464)
.-.+|.+|+.++..... +++.+..+++. + ....|+..|- ..++.-...|+.+|.++- .+++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 34688999999999988 56778777531 1 1223555554 223444667888888888 4556
Q ss_pred hHHHHHhc-------C-----cHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhcCHHhHHHHHHc-CChHHHHHhhhc
Q 012413 375 GREAIVEE-------N-----GIAALVEAIED-----GSVKGKEFAVLTLLQLCAESVKNRGLLVRE-GGIPPLVALSQT 436 (464)
Q Consensus 375 ~~~~i~~~-------g-----~i~~Lv~lL~~-----~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~s 436 (464)
.++.+.+- | .++.+..+|.. .+++++..=+..|.....+++.+...+.++ +.++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 66555431 1 36666666653 367777777888888888899888888776 589999997533
Q ss_pred ---CCHHHHHHHHHHHHHhhcCCCCCCC
Q 012413 437 ---GSVRAKHKAETLLGYLREPRQEGPS 461 (464)
Q Consensus 437 ---~~~~v~~~A~~aL~~L~~~~~~~~~ 461 (464)
.+.-|+-.++-.|+.+-+.....+.
T Consensus 211 ~~~~~~~VqGL~A~LLGicyef~~~~s~ 238 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYEFSTKDSP 238 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHT-S-SCC
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCCCCC
Confidence 3679999999999999987755443
No 272
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=74.14 E-value=80 Score=32.35 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHH-hhcCC--CHHHHHHHHHHHHHHhCCHh-------------hHH
Q 012413 315 SRGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLVG-MLAGQ--GEGMAEKAMVVLSLLAGIAE-------------GRE 377 (464)
Q Consensus 315 ~~v~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~-lL~~~--~~~v~~~A~~aL~nLa~~~~-------------~~~ 377 (464)
..-|++|+..|..|++.- +....++.. .+..++. .-.++ +...+..|+..++.|+.... +-.
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 345678999999998742 221222211 2222222 11222 23446778888888884221 123
Q ss_pred HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 012413 378 AIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLL 449 (464)
Q Consensus 378 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL 449 (464)
.+...-++|.|. --.+..+-++..|++.+...-..-+. ..+ .++++.|+..|.+++.-|..-|+.++
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 344444455444 11245677899999999888765432 222 34799999999999999999998775
No 273
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=1.4e+02 Score=32.91 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=49.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-----cCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-----SGAVPALVPLLKC-SDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-----~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~ 249 (464)
++-++.+|+.+++++++.+..|+..|+...+.+......+.+ ..-.+.|....++ .++..++..+.+|.-|+.-
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt 126 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMT 126 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHhee
Confidence 567888999999999999999999998887764432221111 0111122222222 4567888888888888874
Q ss_pred C
Q 012413 250 E 250 (464)
Q Consensus 250 ~ 250 (464)
.
T Consensus 127 ~ 127 (878)
T KOG2005|consen 127 M 127 (878)
T ss_pred e
Confidence 3
No 274
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.13 E-value=1.1e+02 Score=35.54 Aligned_cols=79 Identities=25% Similarity=0.209 Sum_probs=64.3
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE---DGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~~ 409 (464)
.++++..+|++..|+..+-...+..+.+-+..|..++ .++.+++.....|+++.|++.+. +++......+..++..
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 4678889999999999988888999999999999999 57888888889999999999886 4445555566666666
Q ss_pred Hhh
Q 012413 410 LCA 412 (464)
Q Consensus 410 L~~ 412 (464)
||.
T Consensus 980 Lga 982 (2799)
T KOG1788|consen 980 LGA 982 (2799)
T ss_pred Hhh
Confidence 654
No 275
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=73.98 E-value=2.4 Score=44.32 Aligned_cols=70 Identities=21% Similarity=0.107 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 385 IAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 385 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
...+-.+..+.+++++..|..++++++.+.+..+..+-+...-..+++++-...+++-+.++.||+.+.+
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3444445557899999999999999997755444444445566777888888888999999999887764
No 276
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.24 E-value=16 Score=31.42 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=61.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChHHHHHhhhc---CCHHHHHHHHHHHHHhhcCCCC
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-KNRGLLVREGGIPPLVALSQT---GSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s---~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
++..|..-|+++++.++..|+..|-.+..... .....+.....+..|+.++.. .++.|+.++...+...+..-+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 67788888999999999999999999987753 356667777778889999976 3779999999999887765443
No 277
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.87 E-value=18 Score=31.69 Aligned_cols=74 Identities=9% Similarity=0.004 Sum_probs=61.7
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcCC
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~~~ 456 (464)
.++..|..-|.+.++.++..|+..|-.+.... ..-...+.....+..|+.++.. .++.|+.+....+...++.=
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 36777888888999999999999999988764 3456677888999999999988 68899999999998877543
No 278
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.56 E-value=21 Score=31.23 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=60.9
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcC
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~~ 455 (464)
.++..|..-|++.++.++..|+..|-.+..+. ..-...+.+.+.+..|+.++.. .++.|+.++...+..-+..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999888763 5566778888999999999975 5779999999998877653
No 279
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.78 E-value=20 Score=39.31 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=77.8
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH----h-cCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG----E-SGAVPALVPLLKCSDPWTQEHSVTALLNLS 247 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~----~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La 247 (464)
+-.......++++|.+.+-..|..-+.+++++..+-..--+.+. . ...+..|..-|.+..|.+|..|+.++..+.
T Consensus 295 ~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kif 374 (1128)
T COG5098 295 GIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIF 374 (1128)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 33445677888899999988888888888888755221111111 0 244666666677889999999999998886
Q ss_pred CC----CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 012413 248 LH----ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLA 288 (464)
Q Consensus 248 ~~----~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls 288 (464)
.- +.-| +..+...+..|++.+.-||.+|...+..|-
T Consensus 375 dl~sk~~~~r-----~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 375 DLNSKTVGRR-----HEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred hCcccccchH-----HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 52 1222 335667788888888899999988887754
No 280
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=70.23 E-value=35 Score=33.42 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=49.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccccch--hhhhccCChHHHH----HHhh--------cCChhhHHHHHHHHH
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIEENK--SSIGACGAIPPLV----SLLI--------YGSSRGKKDALTTLY 326 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~--~~i~~~g~i~~Li----~lL~--------~~~~~v~~~A~~aL~ 326 (464)
.+|+++.++.+.++..|..++.+|..+..+-... ..+.+.|..+.+- .+|. +++..+...|..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 6899999999999999999999999987753222 2345566554433 3343 335557777777777
Q ss_pred HHhc
Q 012413 327 KLCS 330 (464)
Q Consensus 327 nL~~ 330 (464)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7744
No 281
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=70.21 E-value=14 Score=32.15 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=59.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC-CC-HH--HHHHHHHHHHHhc
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC-SD-PW--TQEHSVTALLNLS 247 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~-~~-~~--v~~~A~~aL~~La 247 (464)
..++..|.+.|.+.++.++..|+..|-.+.++. +..+..+.....+..|..++.+ .. +. |+..+...|..-+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 568888899999999999999999999999886 5667777777889999998876 33 33 8888888887664
No 282
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=70.19 E-value=50 Score=30.24 Aligned_cols=117 Identities=16% Similarity=0.024 Sum_probs=73.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHH
Q 012413 342 GAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRG 419 (464)
Q Consensus 342 g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~ 419 (464)
-.+|..++=|.+.+..-+.-|......|... .+...++- .-.|.+|-..|.+.++++...++.+|..|+..++..-.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3566667767666666666676666666543 22223332 45677888888899999999999999999655443333
Q ss_pred HHHHc-CChHHHHHhhhc------------CCHHHHHHHHHHHHHhhcCCCCC
Q 012413 420 LLVRE-GGIPPLVALSQT------------GSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 420 ~i~~~-g~i~~Lv~lL~s------------~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
.++-. .-+-+.+++.++ ....+.+....+|..|-++++.+
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 33221 011122222222 23577888888888888887765
No 283
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=69.10 E-value=3 Score=25.29 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc
Q 012413 276 SKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 276 v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~ 312 (464)
+|..|+++|+.+ .+..+++.|++.|++
T Consensus 1 VR~~Aa~aLg~i----------gd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQI----------GDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-----------SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----------CCHHHHHHHHHHhcC
Confidence 578899999987 445578888888763
No 284
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=68.32 E-value=1.2e+02 Score=29.45 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=103.7
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-------hHHHHHhcCChHHHHHhhcCCC----HHHHHHHHHH
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-------NRVLIGESGAVPALVPLLKCSD----PWTQEHSVTA 242 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-------~r~~i~~~g~i~~Ll~lL~~~~----~~v~~~A~~a 242 (464)
...+..+.+++.|.++.... .++..|..++..... .|-.+.=.+.+|.++.-+++++ ......++..
T Consensus 61 ~f~Glq~Ll~KGL~Ss~t~e--~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~ 138 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSSTYE--LTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEA 138 (262)
T ss_pred CchhHHHHHhCccCCCCcHH--HHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 44566666678887765333 566667666654221 1222222344566666666655 1344566678
Q ss_pred HHHhcCCCchHHHHHhcCcHHHHHHHHcc----CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhH
Q 012413 243 LLNLSLHENNKTLITNAGAIKSLVYVLKT----GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGK 318 (464)
Q Consensus 243 L~~La~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~ 318 (464)
|..++.... .+.+..++..... +..+....++..|..--. ++ .+...+-.|+.+|.++.+-++
T Consensus 139 La~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 139 LAQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHH
Confidence 877774211 1233333333322 234455555655554211 11 123346778999999999999
Q ss_pred HHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 319 KDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 319 ~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
..++.+|..+-..-+.+.. ...+.+.+|.+++.++. ..+|+.+|-++.
T Consensus 206 ~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 206 RKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 9999999999886544433 44558899999998654 455666665543
No 285
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=65.20 E-value=36 Score=27.78 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=55.0
Q ss_pred ccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 012413 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVL 366 (464)
Q Consensus 299 ~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL 366 (464)
..+.+..|++.+..+.......++..|..|..++.....+.+-|++..|-++-...++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35567888888888888899999999999999999999999999999977776656666555554444
No 286
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=64.82 E-value=1.3e+02 Score=29.31 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=17.9
Q ss_pred HHHcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHh
Q 012413 338 AVSAGAVRPLVGMLAGQG-EGMAEKAMVVLSLLA 370 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~~~~-~~v~~~A~~aL~nLa 370 (464)
+.+.|+...|+.+..+.+ .+-....+.+++.|-
T Consensus 174 l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~ 207 (266)
T PF04821_consen 174 LFESGVLDLLLTLASSPQESDFNLLLLEIIYLLF 207 (266)
T ss_pred HHHcCHHHHHHHHHhCccccchhhHHHHHHHHHH
Confidence 345677777777776652 222334444555444
No 287
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=64.29 E-value=37 Score=29.25 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=58.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCC--HHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGS--VRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~--~~v~~~A~~aL~~L~~ 454 (464)
++..|..-|++.++.++..|+..|-.+... ...-...+...+.+..|+.++.... +.|+.++...+..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999999877 3556677888899999999998753 3499999988887665
No 288
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=63.31 E-value=41 Score=29.31 Aligned_cols=72 Identities=17% Similarity=0.029 Sum_probs=58.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQT------GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s------~~~~v~~~A~~aL~~L~~ 454 (464)
.++..|..-|.+.++.++..|+..|-.+.... ......+...+.+..|++++.. .++.|+.+....+..-++
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 36777888889999999999999999888653 4566778888899999999953 467999999988876654
No 289
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.00 E-value=51 Score=29.50 Aligned_cols=109 Identities=18% Similarity=0.155 Sum_probs=71.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcC--cHHHHHHHHhc-CCHHHHHHHHHHHHHHhhc---CHH
Q 012413 343 AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEEN--GIAALVEAIED-GSVKGKEFAVLTLLQLCAE---SVK 416 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g--~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~---~~~ 416 (464)
.+..+..+|.+++..-+..++..+..++.... .+.+.+.+ .+..|+..|+. +...++..|+.+|..|... -++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45668888999888888888888887775322 34554544 58888899986 4577888999999888753 222
Q ss_pred -hHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 417 -NRGLLVR--EGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 417 -~~~~i~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.|+.... -+.++.++.+++. +.+...+..+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 2222222 1445555555543 5667777777776654
No 290
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=62.74 E-value=2.1e+02 Score=30.22 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=40.5
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhcCC
Q 012413 385 IAALVEAIED--GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT------GSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 385 i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s------~~~~v~~~A~~aL~~L~~~~ 456 (464)
++.++..|-+ ........+-.++.||+...-. .-.+..|..+|.+ .+..+-+.|...|+++.-..
T Consensus 215 l~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 215 LSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred HHHHHHHHhhHhcccccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 3444444432 3346777888899999864322 2246778888832 23567778888888776544
No 291
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=62.66 E-value=1.8e+02 Score=29.73 Aligned_cols=215 Identities=12% Similarity=0.048 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcC---ChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESG---AVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKS 264 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g---~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~ 264 (464)
+..+..+|+++|..+..+ +..-..+-+.- .+...+..|.+ .+..+.....++|..--.++. +.....+..
T Consensus 59 ~~~L~~qALkll~~~l~~-~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYH-PEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHcc-HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHH
Confidence 566778899999988887 43333333221 34455555644 344566666666655333322 333334444
Q ss_pred HHHHHcc-----CCHHHHHHHHHHHHHhcccccchhhhhc-cC-ChHHHHHHhhcCChhhHHHHHHHHHHHhc--Cc--c
Q 012413 265 LVYVLKT-----GTETSKQNAACALMSLALIEENKSSIGA-CG-AIPPLVSLLIYGSSRGKKDALTTLYKLCS--LK--Q 333 (464)
Q Consensus 265 Lv~lL~~-----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g-~i~~Li~lL~~~~~~v~~~A~~aL~nL~~--~~--~ 333 (464)
++..+.. ++..+..+.+.++.+|... ....+.+ .. -+|.++..+-+....++..|..++..+.. .+ .
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q--~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQ--FPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHH
Confidence 5554432 4566777888888877543 2222332 22 46788887777777888777766665543 11 1
Q ss_pred hHHHH---HH----cC-----CHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHH
Q 012413 334 NKERA---VS----AG-----AVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGK 400 (464)
Q Consensus 334 ~~~~i---v~----~g-----~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 400 (464)
....+ .+ .| ..+.|..++.+ ++.........++.-|-+.......=.-...+...-.+++++++.+|
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k 291 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVK 291 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHH
Confidence 11111 11 12 23446666666 33333334444444444433211111112234444556667888888
Q ss_pred HHHHHHHHHHh
Q 012413 401 EFAVLTLLQLC 411 (464)
Q Consensus 401 ~~A~~aL~~L~ 411 (464)
..|..+=..+.
T Consensus 292 ~~A~~aW~~li 302 (372)
T PF12231_consen 292 IQAFKAWRRLI 302 (372)
T ss_pred HHHHHHHHHHH
Confidence 88877655554
No 292
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=62.23 E-value=60 Score=36.01 Aligned_cols=143 Identities=10% Similarity=-0.000 Sum_probs=93.9
Q ss_pred cCChHHHHHhhcC--------CCHHHHHHHHHHHHHhcC--C-CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 012413 218 SGAVPALVPLLKC--------SDPWTQEHSVTALLNLSL--H-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMS 286 (464)
Q Consensus 218 ~g~i~~Ll~lL~~--------~~~~v~~~A~~aL~~La~--~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~ 286 (464)
.|.++.+...|.. +++.-.+-|.+.+.++.. . +....-+.+.=.++.++..++++.--++..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 3888889988832 234455667777777654 2 2333445555678888889999999999999999999
Q ss_pred hcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHc--CCHHHHHHhhcCCCHHHHHHH
Q 012413 287 LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSA--GAVRPLVGMLAGQGEGMAEKA 362 (464)
Q Consensus 287 Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~--g~v~~Lv~lL~~~~~~v~~~A 362 (464)
++.+ -+....-..+......++.+++..|+..|+-||.-+..+.+...++.+. +.++.|+.+-+.-+.++...+
T Consensus 487 ~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 487 IEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 8443 2222233445666778888889999999999999998877665555442 233334433344444443333
No 293
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=62.09 E-value=31 Score=39.23 Aligned_cols=123 Identities=18% Similarity=0.194 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh
Q 012413 233 PWTQEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL 310 (464)
Q Consensus 233 ~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL 310 (464)
+.++..+...|++++. |....+ ..+|.|++-|... ...+|-+..-+++.+|.+.. +.-...||.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHHHHhhHHHHHHh
Confidence 4577888888988886 344333 2688888877654 55677777777777776522 23344689999999
Q ss_pred hcCChhhHHHHHHHHHHHhcCcchHHHHHH-cCC--HHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 311 IYGSSRGKKDALTTLYKLCSLKQNKERAVS-AGA--VRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 311 ~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~-~g~--v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
.++++-+|+++.-.|.+|.... ++. .|. +..+..++ +.+++++..|--+++.+-
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHH
Confidence 9999999999999999985432 333 221 22333333 445666666655555553
No 294
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=61.54 E-value=2.2e+02 Score=30.06 Aligned_cols=265 Identities=13% Similarity=0.118 Sum_probs=122.0
Q ss_pred CchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCc
Q 012413 174 DLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHEN 251 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~ 251 (464)
.++..+...-.++.. ...+.|..+...|..+.+.....- .....- +...+.. ..++--..-+.+|..|+.+..
T Consensus 25 ~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-~~~R~~----fF~~I~~~~~~~d~~~~l~aL~~LT~~Gr 99 (464)
T PF11864_consen 25 SIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-GLMRAE----FFRDISDPSNDDDFDLRLEALIALTDNGR 99 (464)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-HHHHHH----HHHHHhcCCCchhHHHHHHHHHHHHcCCc
Confidence 334444444445554 356789999999988887744311 111111 1222232 223222233344444454422
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhh---hccCChHHHHHHhhc----C----ChhhHHH
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI---GACGAIPPLVSLLIY----G----SSRGKKD 320 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i---~~~g~i~~Li~lL~~----~----~~~v~~~ 320 (464)
.- ...+.+..|.|...|..--..++..-..+-.. .....+... .+.+.+..++.++.+ + +......
T Consensus 100 di-~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~ 176 (464)
T PF11864_consen 100 DI-DFFEYEIGPFLLSWLEPSYQAARSARRKAKKS--SSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISS 176 (464)
T ss_pred Cc-hhcccchHHHHHHHHHHHHHHHHHHHHHhhcc--ccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 22 22567778888777743321111100000000 000111110 123333444443332 2 3333334
Q ss_pred HHHHHHHHhcCcchH----------HHHHHcC-----CHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCHhhHHHHHhcC
Q 012413 321 ALTTLYKLCSLKQNK----------ERAVSAG-----AVRPLVGMLAGQ--GEGMAEKAMVVLSLLAGIAEGREAIVEEN 383 (464)
Q Consensus 321 A~~aL~nL~~~~~~~----------~~iv~~g-----~v~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~i~~~g 383 (464)
.+.-+..+|...... +.++..| .++.++..|.+- -.+....+..++.||++..-+. -
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~------~ 250 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH------S 250 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH------H
Confidence 444444454422111 1223333 233444444321 1245667777888888644332 2
Q ss_pred cHHHHHHHHhc------CCHHHHHHHHHHHHHHhhcCHHhHHHHHH-c--CChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 384 GIAALVEAIED------GSVKGKEFAVLTLLQLCAESVKNRGLLVR-E--GGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 384 ~i~~Lv~lL~~------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~-~--g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
++..|...|.+ .+..+-.-|+..|..+.....+.+..-.. . -+++.|...++.+++.+-.....++..+
T Consensus 251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence 46678888832 24555667888888777665222221111 2 2678888888877664444444444333
No 295
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=60.87 E-value=1.1e+02 Score=28.16 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=54.3
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH 249 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~ 249 (464)
+....++.+++.|...+...+.-|......+.......+-.=+=...|.+|...|.+.++++...++.+|..|...
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4467888899999988877878888777766655111111111235666777788889999999999999998543
No 296
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=59.42 E-value=2.5e+02 Score=30.02 Aligned_cols=145 Identities=12% Similarity=0.062 Sum_probs=85.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccch-hhh
Q 012413 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENK-SSI 297 (464)
Q Consensus 220 ~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~-~~i 297 (464)
.+.+|+.+ +...+++..+......=+.+..+...+...=..|+++.-|.... +.+-+.-+.....+ ++.+ +.+
T Consensus 199 lLsPLMRl--nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~t---k~~L~~Sl~~wmkhVsedqiQ~F 273 (589)
T PF11229_consen 199 LLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVNT---KKYLFESLSLWMKHVSEDQIQAF 273 (589)
T ss_pred HhhHHHhc--cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHHH---HHHHHHHHHHHHhhCCHHHHHHH
Confidence 34455555 45688988888777666777777788887777788877775443 33333333333333 2222 222
Q ss_pred hccCChHHHHHHhhc----CChhhHHHHHHHHHHHhcCcchHHHHHH--cCCHHHHHHhhc----CCCHHHHHHHHHHHH
Q 012413 298 GACGAIPPLVSLLIY----GSSRGKKDALTTLYKLCSLKQNKERAVS--AGAVRPLVGMLA----GQGEGMAEKAMVVLS 367 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~iv~--~g~v~~Lv~lL~----~~~~~v~~~A~~aL~ 367 (464)
++. .+++.++. .++.+...++.-|..-.+.+.-.+.... ..+...+.++|- ..+-+.-...+.||.
T Consensus 274 ve~----l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~lLPn~i~~~eveLYi~vAkCLS 349 (589)
T PF11229_consen 274 VEN----LMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDLLPNKIQRNEVELYIGVAKCLS 349 (589)
T ss_pred HHH----HHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHh
Confidence 221 34444443 3567788888888776665543333333 446667777772 233344556678888
Q ss_pred HHhCCH
Q 012413 368 LLAGIA 373 (464)
Q Consensus 368 nLa~~~ 373 (464)
.|+..+
T Consensus 350 EMtd~e 355 (589)
T PF11229_consen 350 EMTDTE 355 (589)
T ss_pred hcCHHH
Confidence 887543
No 297
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=59.27 E-value=2.4e+02 Score=29.70 Aligned_cols=212 Identities=18% Similarity=0.101 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHhcCC-C-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh-ccCChHHHHHH
Q 012413 233 PWTQEHSVTALLNLSLH-E-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG-ACGAIPPLVSL 309 (464)
Q Consensus 233 ~~v~~~A~~aL~~La~~-~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~-~~g~i~~Li~l 309 (464)
...|..|+.+|+.++.. + +....+.. +.|+..|++....-|..++-+|..-+.....+..-. -....+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 45688899999998764 2 32222222 268889999988888888888887766532211110 12234666777
Q ss_pred hhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHH-----HHHHhhc---CCCHH--HHHHHHHHHH----HHh----
Q 012413 310 LIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVR-----PLVGMLA---GQGEG--MAEKAMVVLS----LLA---- 370 (464)
Q Consensus 310 L~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~-----~Lv~lL~---~~~~~--v~~~A~~aL~----nLa---- 370 (464)
|.++.+..-......+..+-. .......+.+.|.++ .|-...+ ..+++ ..+.|-.+.. .+.
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 775544333333333333322 222333344555522 2211111 11111 1122222222 111
Q ss_pred CCHhh--HHHHHh-cCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHH
Q 012413 371 GIAEG--REAIVE-ENGIAALVEAIE----DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAK 442 (464)
Q Consensus 371 ~~~~~--~~~i~~-~g~i~~Lv~lL~----~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~ 442 (464)
..... .+.+-+ ..-+...++..+ .-+..++..++.++..+..-.++ =.-+|.+|++-++.+ +..+|
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K------LnPiIrpLMdSIK~Een~~LQ 330 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK------LNPIIRPLMDSIKREENELLQ 330 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC------ccHHHHHHHHHhhccccHHHH
Confidence 11111 112221 112222222222 33566777777777777654322 134677788888775 67999
Q ss_pred HHHHHHHHHhhc
Q 012413 443 HKAETLLGYLRE 454 (464)
Q Consensus 443 ~~A~~aL~~L~~ 454 (464)
..++.+|..|-+
T Consensus 331 ~rsA~slA~Li~ 342 (441)
T PF12054_consen 331 QRSAESLARLIQ 342 (441)
T ss_pred HHHHHHHHHHHH
Confidence 999988887755
No 298
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=59.07 E-value=13 Score=32.86 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q 012413 385 IAALVEAIEDGSVKGKEFAVLTLLQL 410 (464)
Q Consensus 385 i~~Lv~lL~~~~~~v~~~A~~aL~~L 410 (464)
|.+|+++|.+.++.+...|+.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 67777777666666666666666553
No 299
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=58.79 E-value=82 Score=35.37 Aligned_cols=142 Identities=15% Similarity=0.042 Sum_probs=84.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcC---ChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CC-
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESG---AVPALVPLLKCSDPWTQEHSVTALLNLSL-HE- 250 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g---~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~- 250 (464)
.+.++.+...+.++++..-...+.++..+..= ..+...+ -+++-..-....-..+......+|..++. ++
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l-----~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~ 514 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGL-----EKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS 514 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccc-----cccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45666666666666666656666666555433 1111111 11122222222224567778888888887 34
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
+.+..+.+.++...++.++-+++.++...|...|..... .++ -...+-.++++.-..........|..+..
T Consensus 515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~--------R~e~i~~ll~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDG--------RLEAIQALLQSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc-CCc--------HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 445555678899999999999999999999999998753 222 23334444444444455555566666655
Q ss_pred C
Q 012413 331 L 331 (464)
Q Consensus 331 ~ 331 (464)
.
T Consensus 586 ~ 586 (727)
T PF12726_consen 586 L 586 (727)
T ss_pred h
Confidence 3
No 300
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=58.65 E-value=43 Score=38.16 Aligned_cols=128 Identities=13% Similarity=0.083 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYV 268 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~l 268 (464)
.+.++..+.-.|++++-..+...+ ..+|.|++-|+. ++..+|.+...+++.+|.+- .+.-...||.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 456777888888888766444332 478888888876 56778888888888887532 12234589999999
Q ss_pred HccCCHHHHHHHHHHHHHhcccccchhhhhccCC--hHHHHHHhhcCChhhHHHHHHHHHHHhcC
Q 012413 269 LKTGTETSKQNAACALMSLALIEENKSSIGACGA--IPPLVSLLIYGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 269 L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~--i~~Li~lL~~~~~~v~~~A~~aL~nL~~~ 331 (464)
|.++++-+|.++.-.|.+|-.. ..+...|. |..+..+ -+.++.++..|-.+++.+...
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~----~~vKw~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQF----GIVKWNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhh----hhhhcchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998542 12222342 2333333 356778888877777776553
No 301
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.18 E-value=31 Score=29.93 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=57.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCC-H-H--HHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGS-V-R--AKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~-~--v~~~A~~aL~~L~~ 454 (464)
++..|..-|++.++.++..|+..|-.+..+. +.....+.....+..|..++.+.. . . |++++...|...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 5677888889999999999999999999876 456667777788999999887653 3 3 89999888877655
No 302
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=57.19 E-value=90 Score=35.05 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=69.4
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHH-
Q 012413 303 IPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIV- 380 (464)
Q Consensus 303 i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~- 380 (464)
+..+...+..++....+..+.++.+++.-.....+- ...-.+.-..-....-..+......+|..++.. ++....+.
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 445555666667777777777777776622110000 111111222222222234466677888888854 55555555
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
+.++..+++.++-+++.++.+.|...|.+....
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999998853
No 303
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=57.10 E-value=19 Score=31.72 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=43.9
Q ss_pred HHHHHHhhcC-ChhhHHH---HHHHHHHHhcCcch-----HH---HHHH--cCC--HHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 304 PPLVSLLIYG-SSRGKKD---ALTTLYKLCSLKQN-----KE---RAVS--AGA--VRPLVGMLAGQGEGMAEKAMVVLS 367 (464)
Q Consensus 304 ~~Li~lL~~~-~~~v~~~---A~~aL~nL~~~~~~-----~~---~iv~--~g~--v~~Lv~lL~~~~~~v~~~A~~aL~ 367 (464)
..|++||.+. .+.|-.. =+..|..++..... +. .+.. .|| |++|+.+|.+.+..+...|+.+|.
T Consensus 40 ~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk 119 (154)
T PF11791_consen 40 AFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQPLIDLLKSDDEELAEEAAEALK 119 (154)
T ss_dssp HHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHHHHHGG--G-TTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4678888775 3333222 23456667664321 11 1221 343 799999998888899999999998
Q ss_pred HHhCCHhhHHHHHhcCcHHHHHHHHhc
Q 012413 368 LLAGIAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 368 nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
+-.- -.+....+.++-+.
T Consensus 120 ~TlL---------vyDaf~dv~~~ak~ 137 (154)
T PF11791_consen 120 NTLL---------VYDAFNDVAELAKA 137 (154)
T ss_dssp T--T---------TCCHHHHHHHHHHT
T ss_pred hhHH---------HHhhHHHHHHHHHc
Confidence 6541 12345555555554
No 304
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=56.89 E-value=1.9e+02 Score=27.99 Aligned_cols=207 Identities=12% Similarity=0.068 Sum_probs=115.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHcc--CCHHHHHHHHHHHHHhcccccchhhhhc
Q 012413 223 ALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKT--GTETSKQNAACALMSLALIEENKSSIGA 299 (464)
Q Consensus 223 ~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~~~~~~i~~ 299 (464)
.|-..|.++++.+|..|...|..+... +... ....-+..|+..+.+ .|......++.++..|..... ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~ 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FS 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CC
Confidence 455678889999999999999887653 2111 222235556655543 355555555666666653322 11
Q ss_pred cCChHHHHHHhh-c-----CChhhHHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhC
Q 012413 300 CGAIPPLVSLLI-Y-----GSSRGKKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 300 ~g~i~~Li~lL~-~-----~~~~v~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~ 371 (464)
.+.+..+++-+- + .....|..+...|..|..+. +.... ...+.+..+++++.. .++.-...+...+..+..
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 122333333332 2 23457788888888887642 22211 123356667777754 356656666666666652
Q ss_pred -CHhhHHHHHhcCcHHHHHHHHhc----------CC------HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhh
Q 012413 372 -IAEGREAIVEENGIAALVEAIED----------GS------VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALS 434 (464)
Q Consensus 372 -~~~~~~~i~~~g~i~~Lv~lL~~----------~~------~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 434 (464)
.+ . ....+.+-+.+.- ++ ++++..-..|| + .++.-. .-++|.|++-|
T Consensus 154 ~~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl---~-s~~~fa-----~~~~p~LleKL 217 (262)
T PF14500_consen 154 EFD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCL---S-STPLFA-----PFAFPLLLEKL 217 (262)
T ss_pred hcc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHh---c-CcHhhH-----HHHHHHHHHHH
Confidence 22 0 2233333333331 11 23333333333 2 222211 23689999999
Q ss_pred hcCCHHHHHHHHHHHHHhhc
Q 012413 435 QTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 435 ~s~~~~v~~~A~~aL~~L~~ 454 (464)
.++.+.+|..+..+|..+..
T Consensus 218 ~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 218 DSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred cCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999988765
No 305
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=56.02 E-value=5e+02 Score=32.51 Aligned_cols=269 Identities=13% Similarity=-0.008 Sum_probs=150.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCchhHH---HHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHH
Q 012413 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRV---LIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLIT 257 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~---~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~ 257 (464)
++..-.+.+..+...|+..|+.++..--+..+ .-.....+.++..++.+ .+.++++..+.++.+|..... ..|
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI- 1218 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV- 1218 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-
Confidence 34433456778888899888888764221111 11123567777776655 778999999999998864311 111
Q ss_pred hcCcHHHHHHHHc----cCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHhhc----C-ChhhHHHHHHHHH
Q 012413 258 NAGAIKSLVYVLK----TGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLLIY----G-SSRGKKDALTTLY 326 (464)
Q Consensus 258 ~~g~i~~Lv~lL~----~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL~~----~-~~~v~~~A~~aL~ 326 (464)
.. |-+.++.+|. +.++.+...|-.++..+..+ .-..+.. .+.+..+|.+|.. . +..+-..|+..|+
T Consensus 1219 kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d--~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~ 1295 (1780)
T PLN03076 1219 KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE--YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLR 1295 (1780)
T ss_pred hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh--hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHH
Confidence 22 5556666554 45778888888888776532 1111111 3556666666542 2 4556667777777
Q ss_pred HHhc----Cc------------------------chHHH-----HHHcCCHHHHHHh---hcCCCHHHHHHHHHHHHHHh
Q 012413 327 KLCS----LK------------------------QNKER-----AVSAGAVRPLVGM---LAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 327 nL~~----~~------------------------~~~~~-----iv~~g~v~~Lv~l---L~~~~~~v~~~A~~aL~nLa 370 (464)
+++. .+ +.... ......+|.|..+ ..++..+||..|+..|..+-
T Consensus 1296 ~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL 1375 (1780)
T PLN03076 1296 FCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTL 1375 (1780)
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 5521 00 00000 0112344554444 56778999999999887775
Q ss_pred C------CHhhHHHHHhcCcHHHHHHHHhcC-----------------------CHHHHHHHHHHHHHHhhcCHHhHHHH
Q 012413 371 G------IAEGREAIVEENGIAALVEAIEDG-----------------------SVKGKEFAVLTLLQLCAESVKNRGLL 421 (464)
Q Consensus 371 ~------~~~~~~~i~~~g~i~~Lv~lL~~~-----------------------~~~v~~~A~~aL~~L~~~~~~~~~~i 421 (464)
. .++....+.. +++-++...++.. +..+..-+..+|..++.-=...-..+
T Consensus 1376 ~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L 1454 (1780)
T PLN03076 1376 RNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV 1454 (1780)
T ss_pred HHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1233444443 5667776666421 11234555556655553211111122
Q ss_pred HH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 422 VR--EGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 422 ~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
.. .+.+..|..++..+++.+-+-+..+|..|....+
T Consensus 1455 ~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1455 NPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 11 2344455555556788888888888888766544
No 306
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=54.49 E-value=2e+02 Score=27.33 Aligned_cols=130 Identities=15% Similarity=0.058 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCH------------------HHHHHHHHHHHHHhCCHhhH
Q 012413 315 SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGE------------------GMAEKAMVVLSLLAGIAEGR 376 (464)
Q Consensus 315 ~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~------------------~v~~~A~~aL~nLa~~~~~~ 376 (464)
.......|..+..|..++++...+.+.+.++.+.+.|...++ .+...-...|+.|+.++.+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 455667888888898888888777788888888887754311 11233456888899999999
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
+.+-+.+....+.+++...+. .......|.+|=-..+...+ ..|-+.|.+++..+|..|..-|+.+.+
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999987533 22222344444211111111 345567888899999999999987753
No 307
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=53.37 E-value=2e+02 Score=27.20 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc
Q 012413 233 PWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 233 ~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~ 312 (464)
+.....+|..+..|...+++...+.+.+.++.+...|..-++ .+..+. ... ++..
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~------------~~g~~~-~~~------------lfs~ 132 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDP------------MSGITA-HDP------------LFSP 132 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhh------------hcCCcc-ccc------------ccCH
Confidence 556677888888888888877777788888888777765544 111100 000 1110
Q ss_pred C--ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCc-HHHHH
Q 012413 313 G--SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENG-IAALV 389 (464)
Q Consensus 313 ~--~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~-i~~Lv 389 (464)
. +..+...=...|+.|+.++.+.+.+-+.+.+..+..++...+. ......+|.+|=-.- .|- =..|-
T Consensus 133 ~~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~--------~~~~R~iLs 202 (226)
T PF14666_consen 133 QRLSTTLSRGYFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV--------DGHPRIILS 202 (226)
T ss_pred HHHHhhHHHHHHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC--------ccHHHHHHH
Confidence 0 1223334456788899999998888889999999999877543 222333555553211 121 12344
Q ss_pred HHHhcCCHHHHHHHHHHHHHHh
Q 012413 390 EAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 390 ~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
..|.+++..+|..|..-|+.+.
T Consensus 203 KaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 203 KALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHhcCCHHHHHHHHHHHHHHh
Confidence 6677889999999999998775
No 308
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.07 E-value=16 Score=36.83 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=55.6
Q ss_pred HHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 012413 361 KAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE--DGSVKGKEFAVLTLLQLCAESVKNRGLLVRE 424 (464)
Q Consensus 361 ~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 424 (464)
+....+++|| .+++.+..+.+-||++.++.-.. +.+|-+++..+.|+.+|...+.++++.+...
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 4677899999 78999999999999998887765 5689999999999999999988888877654
No 309
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=52.42 E-value=40 Score=28.26 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=32.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh
Q 012413 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN 258 (464)
Q Consensus 220 ~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~ 258 (464)
+|+.|+.-|.+++++|...|..+|.+.+.++.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578899999999999999999999999987765555543
No 310
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=51.75 E-value=13 Score=30.81 Aligned_cols=41 Identities=29% Similarity=0.283 Sum_probs=33.0
Q ss_pred HHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 012413 196 SAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237 (464)
Q Consensus 196 ~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~ 237 (464)
..++.|..++.. |++-..+++.|+++.|+.+|.|++.++..
T Consensus 65 ~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 456677777777 67778888999999999999998877643
No 311
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=51.60 E-value=98 Score=26.23 Aligned_cols=126 Identities=18% Similarity=0.105 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc---C-c-----chH-HH----HHH
Q 012413 275 TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS---L-K-----QNK-ER----AVS 340 (464)
Q Consensus 275 ~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~---~-~-----~~~-~~----iv~ 340 (464)
.++...+.++..++..+-- -.....++.+++++.+ ++......+.+|..+.. . . ..+ .. +.+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P---~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWP---QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTT---TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCh---hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4677778888888654210 0124567888888877 45666666666666644 1 0 111 11 222
Q ss_pred --cCCHHHHHHhhcCCC----HHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 012413 341 --AGAVRPLVGMLAGQG----EGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTL 407 (464)
Q Consensus 341 --~g~v~~Lv~lL~~~~----~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 407 (464)
...+..+..++.... ..+...++.++..... --....+.+.+.++.+.+++.++ ..+..|+.||
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 223444445554333 6778888888888876 23345566677999999999544 4477887775
No 312
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=51.10 E-value=18 Score=22.03 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc
Q 012413 275 TSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 275 ~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~ 312 (464)
.+|..|+++|+++ ....+++.|++.|.+
T Consensus 2 ~vR~~aa~aLg~~----------~~~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQL----------GDEEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHc----------CCHhHHHHHHHHhcC
Confidence 4788999999997 334467788887765
No 313
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=50.98 E-value=66 Score=27.34 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=24.2
Q ss_pred CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 012413 172 PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKN 207 (464)
Q Consensus 172 ~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~ 207 (464)
+..|+..++.++..+++ ++......+..|..+..+
T Consensus 21 P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eE 55 (148)
T PF08389_consen 21 PQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEE 55 (148)
T ss_dssp TTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred hhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Confidence 44677888888888777 466666677777666543
No 314
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=49.12 E-value=19 Score=29.92 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHH
Q 012413 359 AEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGK 400 (464)
Q Consensus 359 ~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 400 (464)
....+..+..|+..|+.-..+++.|+++.|+.+|.+++.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 456778888999999999999999999999999999877654
No 315
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=48.82 E-value=2.9e+02 Score=29.51 Aligned_cols=169 Identities=14% Similarity=0.077 Sum_probs=103.5
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHc--c---------CCHHHHHHHHHHHHHhcccccchhh
Q 012413 228 LKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLK--T---------GTETSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 228 L~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~--~---------~~~~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
-.+++.+|...|-..|..+..+-+ +...|..|..+.. . .++.+|...+..|..=
T Consensus 246 sad~~~~V~~~ae~~LKr~~~~~e------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS--------- 310 (501)
T PF13001_consen 246 SADSNSSVSDRAEDLLKRLSVSLE------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS--------- 310 (501)
T ss_pred EeCCcchHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh---------
Confidence 345677899999999988887622 2345666776665 2 3667887777766651
Q ss_pred hhccCChHHHHHHh----hcC--ChhhHHHHHHHH---HHHhcC-cch-H---HHHHHcCCHHHHHH----hhcCCCHHH
Q 012413 297 IGACGAIPPLVSLL----IYG--SSRGKKDALTTL---YKLCSL-KQN-K---ERAVSAGAVRPLVG----MLAGQGEGM 358 (464)
Q Consensus 297 i~~~g~i~~Li~lL----~~~--~~~v~~~A~~aL---~nL~~~-~~~-~---~~iv~~g~v~~Lv~----lL~~~~~~v 358 (464)
+.....+|..++++ .+. +..++..++..+ .....+ +.. . ..++..|+.|.+-. --...+...
T Consensus 311 ~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~l 390 (501)
T PF13001_consen 311 VIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIEL 390 (501)
T ss_pred HHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHH
Confidence 11122233333333 333 456666666666 444432 222 1 22344666665510 112235667
Q ss_pred HHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 359 AEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 359 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
+..+-.+|+.|+. .+..- .-+-+.+..|.+-|.++.++++...-.||..|+..
T Consensus 391 R~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 391 RSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 8899999999995 33220 11256788899999888999999999999999864
No 316
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=48.16 E-value=2.7e+02 Score=27.02 Aligned_cols=58 Identities=12% Similarity=0.042 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhCC-----------------HhhHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhc
Q 012413 356 EGMAEKAMVVLSLLAGI-----------------AEGREAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 356 ~~v~~~A~~aL~nLa~~-----------------~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~ 413 (464)
..+.+.++..++|+..- +.....+.+.|+...|+.+..+. ........+.++..|..+
T Consensus 134 ~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 134 NLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 34566677777777532 12234455688888888888875 333444677777777654
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=47.69 E-value=95 Score=35.26 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCCchHHHHHhcCcHHHHHHHH----ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC
Q 012413 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVL----KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG 313 (464)
Q Consensus 238 ~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~ 313 (464)
..+.+|.-|....+.-..+.+.|. ..++-++ +..+..+.-.+...|+.|+.|......+++.|+|..|+..=+-
T Consensus 328 ~~~q~l~~lgey~e~lpv~~~~g~-~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~- 405 (1516)
T KOG1832|consen 328 YCIQCLEILGEYVEVLPVLHEKGV-DVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRV- 405 (1516)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCc-hhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCc-
Confidence 344444444444444445555543 3333333 3345556667777888888888888889999998877654221
Q ss_pred ChhhHHHHHHHHHHHhcCcchHHHH------HHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHH
Q 012413 314 SSRGKKDALTTLYKLCSLKQNKERA------VSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAA 387 (464)
Q Consensus 314 ~~~v~~~A~~aL~nL~~~~~~~~~i------v~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~ 387 (464)
...-.-...+|+.|.......+.+ +-..+|..-+.+|.......+.+++......-.+......+-...++..
T Consensus 406 -s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~ 484 (1516)
T KOG1832|consen 406 -SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQK 484 (1516)
T ss_pred -hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 112222344666665544443333 2234555566666554443344433322211122333334444567777
Q ss_pred HHHHHhc
Q 012413 388 LVEAIED 394 (464)
Q Consensus 388 Lv~lL~~ 394 (464)
|+.++++
T Consensus 485 l~~~~~~ 491 (1516)
T KOG1832|consen 485 LLAILKD 491 (1516)
T ss_pred HHHHHHH
Confidence 7777764
No 318
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=46.89 E-value=1.3e+02 Score=30.39 Aligned_cols=139 Identities=14% Similarity=0.019 Sum_probs=75.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC------C-CHHHHHHHHHHHHHhcCCCch
Q 012413 180 KICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC------S-DPWTQEHSVTALLNLSLHENN 252 (464)
Q Consensus 180 ~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~------~-~~~v~~~A~~aL~~La~~~~~ 252 (464)
..+.+.+.+.+...|..|+..| ..+ +.. ...+|.++..+.+ . +..........+..|..++..
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL---~tD-~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSL---RTD-PGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh---ccC-CCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 3334444456666666666554 222 110 1346666666543 2 566667777777777777755
Q ss_pred HHHHHhcCcHHHHHHHHcc----------CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCC-h-hhHHH
Q 012413 253 KTLITNAGAIKSLVYVLKT----------GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGS-S-RGKKD 320 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~----------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~-~-~v~~~ 320 (464)
.-...-+..+|.++.++-. ....+|..|+..|..++..-.....-.....+..+.+.|.++. + ....-
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 4333333478888877732 2358999999999999864221111122223445555555542 2 22444
Q ss_pred HHHHHHHH
Q 012413 321 ALTTLYKL 328 (464)
Q Consensus 321 A~~aL~nL 328 (464)
|+..|..|
T Consensus 331 Ai~GL~~l 338 (343)
T cd08050 331 AIVGLSAL 338 (343)
T ss_pred HHHHHHHh
Confidence 44444444
No 319
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=46.68 E-value=92 Score=31.27 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCHhhHHHHHhcC--cHHHHHHHHhcC---CHHHHHHHHHHHHHHhhcCHHhHHHH
Q 012413 358 MAEKAMVVLSLLAGIAEGREAIVEEN--GIAALVEAIEDG---SVKGKEFAVLTLLQLCAESVKNRGLL 421 (464)
Q Consensus 358 v~~~A~~aL~nLa~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~~v~~~A~~aL~~L~~~~~~~~~~i 421 (464)
++-.|+.+|.++...+.....++..+ .+..|+++++-+ ...+|..|..+|..|+.+.......+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 35556666666666777888888877 999999999853 57899999999999998765444433
No 320
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=46.46 E-value=80 Score=26.90 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=46.3
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCc-hhHHHHHh-cCChHHHHHhhcCCC--------HHHHHHHHHHHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRS-DNRVLIGE-SGAVPALVPLLKCSD--------PWTQEHSVTALL 244 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~-~~r~~i~~-~g~i~~Ll~lL~~~~--------~~v~~~A~~aL~ 244 (464)
...++..|.+.|++.++.|+..++++|..++.... .++..+.+ ...|..+.+.=-..| ..||..|-.++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 35688899999999999999999999999876644 45554443 233444333322122 346666665554
Q ss_pred Hh
Q 012413 245 NL 246 (464)
Q Consensus 245 ~L 246 (464)
.|
T Consensus 116 ~i 117 (122)
T cd03572 116 AI 117 (122)
T ss_pred HH
Confidence 44
No 321
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=45.61 E-value=1.1e+02 Score=30.82 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHhcCcchHHHHHHcC--CHHHHHHhhcCCC---HHHHHHHHHHHHHHhCCHhhHHHHHh-------cCc
Q 012413 317 GKKDALTTLYKLCSLKQNKERAVSAG--AVRPLVGMLAGQG---EGMAEKAMVVLSLLAGIAEGREAIVE-------ENG 384 (464)
Q Consensus 317 v~~~A~~aL~nL~~~~~~~~~iv~~g--~v~~Lv~lL~~~~---~~v~~~A~~aL~nLa~~~~~~~~i~~-------~g~ 384 (464)
+|..|+.++..+...+....++...+ .+..|++++..+. ..++..|+.+|..|+........|+. +|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 44456666666665667788888766 8999999997654 56799999999999965444333332 456
Q ss_pred HHHHHHHH
Q 012413 385 IAALVEAI 392 (464)
Q Consensus 385 i~~Lv~lL 392 (464)
+..+++.+
T Consensus 318 L~~llR~~ 325 (329)
T PF06012_consen 318 LPQLLRKC 325 (329)
T ss_pred HHHHHHHH
Confidence 66665543
No 322
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.48 E-value=1.4e+02 Score=24.63 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=51.9
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCc-hhHHHHHhcCChHHHHHh----h--cCCCHHHHHHHHHHHHHh
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRS-DNRVLIGESGAVPALVPL----L--KCSDPWTQEHSVTALLNL 246 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~-~~r~~i~~~g~i~~Ll~l----L--~~~~~~v~~~A~~aL~~L 246 (464)
....++..|.+.|.+.++.++..|+..|-.+.++.. .....+.....+..++.+ . ...+..||..+..++...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 346788888999999999999999999999988754 445555555555555442 1 123677888887776543
No 323
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=44.59 E-value=2.7e+02 Score=27.79 Aligned_cols=210 Identities=18% Similarity=0.078 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc
Q 012413 193 IKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT 271 (464)
Q Consensus 193 vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 271 (464)
-|...+.+|..+... . ....++..|..++.. .++.....++.+++.=...- ..-.....+..+.+-+++
T Consensus 3 ~r~~~~~~L~~l~~~-~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~ 72 (339)
T PF12074_consen 3 QRVLHASMLSSLPSS-S------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKD 72 (339)
T ss_pred HHHHHHHHHHhCCCc-c------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcC
Confidence 344555666555542 1 234556667777765 56666666666664422100 000123366777777888
Q ss_pred CCHHHHHHHHHHHHHhcccccchhhh-hccCChHHHHHHhhc----CChhhH----HHHHHHHHHHhc--CcchHHHHH-
Q 012413 272 GTETSKQNAACALMSLALIEENKSSI-GACGAIPPLVSLLIY----GSSRGK----KDALTTLYKLCS--LKQNKERAV- 339 (464)
Q Consensus 272 ~~~~v~~~a~~aL~~Ls~~~~~~~~i-~~~g~i~~Li~lL~~----~~~~v~----~~A~~aL~nL~~--~~~~~~~iv- 339 (464)
..+.+|..-+..++.+.....+.... .-...+|.|++.++. +.+... ..+.-.+. +.. .+.......
T Consensus 73 kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~ 151 (339)
T PF12074_consen 73 KKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNIS 151 (339)
T ss_pred CCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhh
Confidence 77778887777777665411111111 113357788887754 222211 11221222 211 111000000
Q ss_pred ----HcCCH------HHHHHhhcCCCHHHHHHHHHHHHHHhCC-Hh-hHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHH
Q 012413 340 ----SAGAV------RPLVGMLAGQGEGMAEKAMVVLSLLAGI-AE-GREAIVEENGIAALVEAIEDG--SVKGKEFAVL 405 (464)
Q Consensus 340 ----~~g~v------~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~-~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~ 405 (464)
-.+-= +.+..-+ ..++.....+.+|..+..+ .. ..... ....-..++.++-+. ...+|..|..
T Consensus 152 ~~~l~~~~kps~ll~~kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 152 FWSLALDPKPSFLLSEKVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhccCCCcchhcCHHHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 00000 1111111 2233344455555555532 21 11111 334567788888887 8999999999
Q ss_pred HHHHHhhcCHH
Q 012413 406 TLLQLCAESVK 416 (464)
Q Consensus 406 aL~~L~~~~~~ 416 (464)
+|..+....+.
T Consensus 229 ~l~~l~~~~~~ 239 (339)
T PF12074_consen 229 ALKKLYASNPE 239 (339)
T ss_pred HHHHHHHhChH
Confidence 99999887665
No 324
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=43.43 E-value=1.5e+02 Score=31.78 Aligned_cols=171 Identities=14% Similarity=0.089 Sum_probs=100.0
Q ss_pred ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh--c---------CChhhHHHHHHHHHHHhcCcchHHHH
Q 012413 270 KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI--Y---------GSSRGKKDALTTLYKLCSLKQNKERA 338 (464)
Q Consensus 270 ~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~--~---------~~~~v~~~A~~aL~nL~~~~~~~~~i 338 (464)
.+.+.++...|-..|..+... +-+...|..|+.+.. . .++.+|...+..|..=......
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~---- 316 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATS---- 316 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhC----
Confidence 456677888888888887655 334556778888766 2 2455666655555442110000
Q ss_pred HHcCCHHHHHHhhcCC--CHHHHHHHHHHH---HHHhC-CHh-h---HHHHHhcCcHHHHHH-----HHhcCCHHHHHHH
Q 012413 339 VSAGAVRPLVGMLAGQ--GEGMAEKAMVVL---SLLAG-IAE-G---REAIVEENGIAALVE-----AIEDGSVKGKEFA 403 (464)
Q Consensus 339 v~~g~v~~Lv~lL~~~--~~~v~~~A~~aL---~nLa~-~~~-~---~~~i~~~g~i~~Lv~-----lL~~~~~~v~~~A 403 (464)
-...+..+..-|.+. ...++..++..+ ..... .+. . -..++..++.+.+ + --...+...|..+
T Consensus 317 -~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 317 -FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred -CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHH
Confidence 011223333334444 344455555555 33331 111 1 1122234444444 1 1123578899999
Q ss_pred HHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 404 VLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 404 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
-.+||.|+...+.. ...+.+.+..|.+-|..+.++++.....||..+..
T Consensus 395 Ye~lG~L~~~~p~l--~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 395 YETLGLLAKRAPSL--FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHccCccc--ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99999999876542 11346789999999988889999999999988765
No 325
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.30 E-value=2.5e+02 Score=34.79 Aligned_cols=229 Identities=13% Similarity=0.040 Sum_probs=117.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHH-
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTL- 255 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~- 255 (464)
....++..|..+++..+..+..++..+++.-+.. .++ .+..+..+.-|.+ .++-.|.--..+|+.+-++...-..
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 3444566777888888888888888887653321 111 1334445555555 6666666666677776554321110
Q ss_pred HHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcC---ChhhHHHHHHHHH----
Q 012413 256 ITNAGAIKSLVYVLKTGT-ETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYG---SSRGKKDALTTLY---- 326 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~---~~~v~~~A~~aL~---- 326 (464)
=....++..|..+-+++. +.|+..++.++..+.... ......++ -.+..+..+|.+. ..++...--+++.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 012335777777777764 589998888888875432 11111111 1123333444332 2222222222221
Q ss_pred --HHhc--Ccc---h----HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC
Q 012413 327 --KLCS--LKQ---N----KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDG 395 (464)
Q Consensus 327 --nL~~--~~~---~----~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~ 395 (464)
++.. .++ | ...-++.-.+-...-++..++..++.++..+|-++..+... .+--+-.|..|..++.+.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSS 1110 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcch
Confidence 2211 111 0 11111111222222334455778888899998888754322 111123466677766666
Q ss_pred CHHHHHHHHHHHHHHhh
Q 012413 396 SVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 396 ~~~v~~~A~~aL~~L~~ 412 (464)
---.+.....+|.+|..
T Consensus 1111 ~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1111 YLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred hhhhhhhHHhhhhHHhH
Confidence 55556666666666654
No 326
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=43.28 E-value=1.3e+02 Score=22.02 Aligned_cols=53 Identities=26% Similarity=0.331 Sum_probs=40.6
Q ss_pred HHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcCCCCCC
Q 012413 407 LLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAETLLGYLREPRQEGP 460 (464)
Q Consensus 407 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~~L~~~~~~~~ 460 (464)
|..|| .....|..+++.|+-+.|..+-+.. ++.|+...-..+..|-...++..
T Consensus 2 LllL~-~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~ 55 (58)
T PF04064_consen 2 LLLLC-ATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEG 55 (58)
T ss_pred HhHHh-ccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 44455 3467899999999888887776654 78999999999999887666554
No 327
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=42.96 E-value=1.2e+02 Score=30.59 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=62.7
Q ss_pred cHHHHHHHHccC-------CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc----------CChhhHHHHHH
Q 012413 261 AIKSLVYVLKTG-------TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY----------GSSRGKKDALT 323 (464)
Q Consensus 261 ~i~~Lv~lL~~~-------~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~----------~~~~v~~~A~~ 323 (464)
.+|.++..+.+. +..+.......+..|..++...-...=.-.+|.++.++-. ++..+|..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 466777766543 4556666677777776665443222223467888877732 23478999999
Q ss_pred HHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCH--HHHHHHHHHHHHHh
Q 012413 324 TLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGE--GMAEKAMVVLSLLA 370 (464)
Q Consensus 324 aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~--~v~~~A~~aL~nLa 370 (464)
+|..++..=...-.-+....+..+.+.+.++.. ....-|+..|..|.
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 999998721110011222244456666655442 22556666666554
No 328
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=42.54 E-value=1.6e+02 Score=24.20 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=51.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhh----h--cCCHHHHHHHHHHHHHhh
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALS----Q--TGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL----~--s~~~~v~~~A~~aL~~L~ 453 (464)
++..|..-|.+.++.++..|+..|-.+..+. +.....+.....+..++.+. . ..+..||.++..++...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5677777888889999999999999999764 45556676766666665531 1 126799999998887654
No 329
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=42.06 E-value=58 Score=32.12 Aligned_cols=55 Identities=31% Similarity=0.331 Sum_probs=43.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCc--------------hhHHHHHhcCChHHHHHhhcC
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRS--------------DNRVLIGESGAVPALVPLLKC 230 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~--------------~~r~~i~~~g~i~~Ll~lL~~ 230 (464)
...+..+++.|...+...|..|+++|..++.+.- .+-..+.+.|+++.|+.+|+.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4677888999999999999999999999997742 223346678888888888754
No 330
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=41.90 E-value=1.4e+02 Score=24.88 Aligned_cols=39 Identities=33% Similarity=0.237 Sum_probs=31.3
Q ss_pred ChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHH
Q 012413 302 AIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVS 340 (464)
Q Consensus 302 ~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~ 340 (464)
+|+.|+.-|.++++.|...|..+|...|..+...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 478888888888999999999999998887766555554
No 331
>PRK09169 hypothetical protein; Validated
Probab=41.04 E-value=8.9e+02 Score=31.03 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=27.9
Q ss_pred cccccCCcchhHHHHHHh-hhhh--cccchhhhHHHHHHhhcCCCchhh
Q 012413 88 AKSVKSTISEDDYLNVSQ-AFSD--FSVCSSDISGELQRLASLPSPENI 133 (464)
Q Consensus 88 ~~~~~~~~~e~~~~~L~~-ll~~--~~~~r~~a~~~l~~la~~~~~~~~ 133 (464)
+|-++++..++++.++.. +++. ...--.+++..|+-+++.|....+
T Consensus 133 sK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c 181 (2316)
T PRK09169 133 SKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDC 181 (2316)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHH
Confidence 555677777888888766 4432 122234567777777777765443
No 332
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=40.58 E-value=2.1e+02 Score=24.80 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=58.9
Q ss_pred CchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCc-hhHHHHHhcCChHH-HHHhhcC---CCHHHHHHHHHHHHHhc
Q 012413 174 DLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRS-DNRVLIGESGAVPA-LVPLLKC---SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~-~~r~~i~~~g~i~~-Ll~lL~~---~~~~v~~~A~~aL~~La 247 (464)
+...++..|.+.|.+ .++.++..|+..|-.+.++.. .....+...+.+.. |+.++.. .+..|+...+..+...+
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 446788888898974 689999999999999988854 45566777889987 8999863 34588988888887765
Q ss_pred C
Q 012413 248 L 248 (464)
Q Consensus 248 ~ 248 (464)
.
T Consensus 115 ~ 115 (141)
T cd03565 115 D 115 (141)
T ss_pred H
Confidence 3
No 333
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.43 E-value=2.3e+02 Score=24.10 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=48.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCHhhHHHHHh-cCcHHHHHHHHhcC--------CHHHHHHHHHHHHHHh
Q 012413 343 AVRPLVGMLAGQGEGMAEKAMVVLSLLA--GIAEGREAIVE-ENGIAALVEAIEDG--------SVKGKEFAVLTLLQLC 411 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~~v~~~A~~aL~nLa--~~~~~~~~i~~-~g~i~~Lv~lL~~~--------~~~v~~~A~~aL~~L~ 411 (464)
++..|..-|++.++-|+.+++.+|.+|+ +.+..+..+.. ...|..+.++-... ...||..|-.++..|.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 5567888888888889999999999999 44566666655 34566666655522 2457777777776665
Q ss_pred h
Q 012413 412 A 412 (464)
Q Consensus 412 ~ 412 (464)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 3
No 334
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=40.16 E-value=3.9e+02 Score=26.60 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=86.7
Q ss_pred HHHHHhcCcHHHHHHHHcc-----------------------CCHHHHHHHHHHHHHhcccccchh--------------
Q 012413 253 KTLITNAGAIKSLVYVLKT-----------------------GTETSKQNAACALMSLALIEENKS-------------- 295 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~-----------------------~~~~v~~~a~~aL~~Ls~~~~~~~-------------- 295 (464)
+..+++.|.||.|-+++.. ++..++.+-+..+.+++.+..++.
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3466788888888887753 122588888999998887542221
Q ss_pred --------hhhccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhcCcch---HHHHHHcCCHHHHHHhhcCCC---HHHH
Q 012413 296 --------SIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCSLKQN---KERAVSAGAVRPLVGMLAGQG---EGMA 359 (464)
Q Consensus 296 --------~i~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~~~~~---~~~iv~~g~v~~Lv~lL~~~~---~~v~ 359 (464)
.-.+.|.+..++..+..+ +...|-+-+.++-...+.... +..+.+.|.++.|+..+-++. ..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 112356777788777764 667888999999999885543 334567999999999876543 4678
Q ss_pred HHHHHHHHHHhCCH
Q 012413 360 EKAMVVLSLLAGIA 373 (464)
Q Consensus 360 ~~A~~aL~nLa~~~ 373 (464)
.-....|+.|..+.
T Consensus 162 Q~~FDLLGELiK~n 175 (303)
T PF12463_consen 162 QSNFDLLGELIKFN 175 (303)
T ss_pred HHHHHHHHHHHCCC
Confidence 88999999999654
No 335
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.74 E-value=8e+02 Score=30.11 Aligned_cols=191 Identities=14% Similarity=0.031 Sum_probs=112.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH-HHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhcCCCc
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR-VLIGESGAVPALVPLLKC----SDPWTQEHSVTALLNLSLHEN 251 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r-~~i~~~g~i~~Ll~lL~~----~~~~v~~~A~~aL~~La~~~~ 251 (464)
+.+-.++..+++.++.+|..|.+++...-.| .+++ +...+.-.+-.++.+.++ +++++-...+.
T Consensus 1439 ~lLa~~F~~lSS~D~~mr~la~~~lqi~~dH-Le~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~al---------- 1507 (1758)
T KOG1791|consen 1439 GLLALLFKGLSSDDPSMRKLAYWVLQIFLDH-LENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICAL---------- 1507 (1758)
T ss_pred ccHHHHhhhhccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHH----------
Confidence 3555567888999999999998888666655 3332 222222233333333332 22222111111
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC---ChhhHHHHHHHHHHH
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG---SSRGKKDALTTLYKL 328 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~---~~~v~~~A~~aL~nL 328 (464)
.+.....++-.+...+....-..|+. ..+++..++|.+-+.+-+. ....|.+....+...
T Consensus 1508 ---------F~A~~~~ill~Ps~~ly~~In~~L~~--------s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~g 1570 (1758)
T KOG1791|consen 1508 ---------FIAFFSDILLVPSEGLYFPINGLLLS--------SKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKG 1570 (1758)
T ss_pred ---------HHHHHHHHHcCCccccchhHHHHHHh--------hhhcccCCCccHHHHHHhccccccchhhhhHHHHHHH
Confidence 11122233333333322222222222 2356777788887877663 344788888888888
Q ss_pred hcCcchHHHHHHcCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhCCHhhHHHH-HhcCcHHHHHHHHhcC
Q 012413 329 CSLKQNKERAVSAGAVRPLVGMLAGQG--EGMAEKAMVVLSLLAGIAEGREAI-VEENGIAALVEAIEDG 395 (464)
Q Consensus 329 ~~~~~~~~~iv~~g~v~~Lv~lL~~~~--~~v~~~A~~aL~nLa~~~~~~~~i-~~~g~i~~Lv~lL~~~ 395 (464)
.......+.....+....++....++- ...+.-.+.+|.+=...+.....+ ...|....++.++.+.
T Consensus 1571 lks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~ 1640 (1758)
T KOG1791|consen 1571 LKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSS 1640 (1758)
T ss_pred hcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcccc
Confidence 888888888888888888888887643 223445566666666676554444 4588899999999874
No 336
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=39.04 E-value=3.1e+02 Score=29.17 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=16.3
Q ss_pred HcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHh
Q 012413 340 SAGAVRPLVGMLA-GQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 340 ~~g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa 370 (464)
+.+.++.|+.+|. ..+.+++..|+..|..|.
T Consensus 60 ~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII 91 (475)
T PF04499_consen 60 EQNLIPRLIDLLSPSYSSDVQSNAADFLKAII 91 (475)
T ss_pred HhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 4556666666664 223445555555555554
No 337
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.91 E-value=3.3e+02 Score=29.32 Aligned_cols=141 Identities=12% Similarity=0.003 Sum_probs=82.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc--------CCHHHHHHHHHHHHHhcccccc
Q 012413 222 PALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT--------GTETSKQNAACALMSLALIEEN 293 (464)
Q Consensus 222 ~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~v~~~a~~aL~~Ls~~~~~ 293 (464)
..+++.+...++..+..|+..|.. ++... ..+|.++.++.+ .+-.+..+....++.|..++..
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---DsGL~------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---DSGLQ------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---CccHH------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 344555555667777777666522 22211 135566666644 3556677777777887766544
Q ss_pred hhhhhccCChHHHHHHhhc----------CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCC--HHHHHH
Q 012413 294 KSSIGACGAIPPLVSLLIY----------GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG--EGMAEK 361 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~lL~~----------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~--~~v~~~ 361 (464)
.-.-.=...+|.++.++-. ++..+|..|+..+..+++.-...-.-....++..+.+.+.+.. .....-
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 3222224457777777643 2445889999999999884333222244456677777776653 334555
Q ss_pred HHHHHHHHhC
Q 012413 362 AMVVLSLLAG 371 (464)
Q Consensus 362 A~~aL~nLa~ 371 (464)
++..|..|..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 6666665554
No 338
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=38.86 E-value=4.3e+02 Score=29.45 Aligned_cols=135 Identities=16% Similarity=0.059 Sum_probs=83.8
Q ss_pred CChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHH
Q 012413 301 GAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIV 380 (464)
Q Consensus 301 g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~ 380 (464)
..|..|+.+|.+.+..+...+-..+..+....... -.+..||...-..+. ..|+.+|..+-. +..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~t~s---~~~~~il~~~~~-P~~K---- 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP------WLVNGLVDYYLSTNS---QRALEILVGVQE-PHDK---- 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhhcCc---HHHHHHHHhcCC-ccHH----
Confidence 45778899999998888888777776654432110 012333333222111 233334432211 1000
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhh
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAETLLGYLR 453 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~~L~ 453 (464)
.....|=+++. .+.-|..++..|+.+....+..-..|.+...++.|++.|+.+ +.-+...|..+|-+|-
T Consensus 70 --~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 70 --HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred --HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 12222333333 456788999999999998888888999999999999999876 5677777777776653
No 339
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.69 E-value=1e+02 Score=36.75 Aligned_cols=147 Identities=12% Similarity=0.034 Sum_probs=85.8
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHH
Q 012413 259 AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQNKER 337 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~ 337 (464)
.|++|.|-.-|.+++..+|..|...++.|-......-.=--...+...+..+.+.+..||..++....+.-.+ +.....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 4678888888899999999999999999865533221100133456666677778889998888877665443 322111
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 338 AVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
. ...+.--..+.+++++.....++. .+......-.++.. .+..+.+.+.+....||..|+.-|..+-.
T Consensus 338 ~-----~~~~~l~~~~~D~~~rir~~v~i~-~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 338 S-----TILLALRERDLDEDVRVRTQVVIV-ACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred H-----HHHHHHHhhcCChhhhheeeEEEE-EeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 1 111111112333333332221111 11111222233333 66677777778889999999998888765
No 340
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=38.49 E-value=8.3e+02 Score=29.97 Aligned_cols=188 Identities=12% Similarity=0.038 Sum_probs=94.5
Q ss_pred cHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchh-----h-----hhccCChHHHHHH----hhcCChhhHHHHHHHH
Q 012413 261 AIKSLVYVL-KTGTETSKQNAACALMSLALIEENKS-----S-----IGACGAIPPLVSL----LIYGSSRGKKDALTTL 325 (464)
Q Consensus 261 ~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~-----~-----i~~~g~i~~Li~l----L~~~~~~v~~~A~~aL 325 (464)
.+..++-++ .+.+..-+..+-..|.+-........ . .+=...++.++.+ |.+.++.++..+...-
T Consensus 380 v~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y 459 (1426)
T PF14631_consen 380 VIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLY 459 (1426)
T ss_dssp THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 566655543 33344445555555554333211111 1 1123456666654 4567888888887777
Q ss_pred HHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh-cCcHHHHHHHHhcCCHHHHHHHH
Q 012413 326 YKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE-ENGIAALVEAIEDGSVKGKEFAV 404 (464)
Q Consensus 326 ~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~ 404 (464)
..+-..-+ .+.+..++..|+..+.+....-...|+.+|..|+.. +...+.. +..+..+++++..=+..=-....
T Consensus 460 ~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~--~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf 534 (1426)
T PF14631_consen 460 KYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK--NPSELQPFATFLKGILDYLDNLSLQQIRKLF 534 (1426)
T ss_dssp HHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHTHHHHHGGGGGGGG--HHHHHHHH
T ss_pred HHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 66655332 123334777888888766666677889999999842 2333433 33456666666654433344456
Q ss_pred HHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHH----HHHHHHHhhc
Q 012413 405 LTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHK----AETLLGYLRE 454 (464)
Q Consensus 405 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~----A~~aL~~L~~ 454 (464)
..|+.|+.........+ +...--.+.+.|.+.++..++. |...++.++.
T Consensus 535 ~il~~La~~~~~~~s~i-~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la~ 587 (1426)
T PF14631_consen 535 DILCTLAFSDSSSSSSI-QDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLAA 587 (1426)
T ss_dssp HHHHHHHHHHSS---HH-HHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcCCcccchhh-HHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHH
Confidence 66666664321111112 2223344455566667666654 3344444444
No 341
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=38.04 E-value=7.9e+02 Score=29.55 Aligned_cols=117 Identities=14% Similarity=0.059 Sum_probs=62.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcCHHh---
Q 012413 343 AVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSV--KGKEFAVLTLLQLCAESVKN--- 417 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~A~~aL~~L~~~~~~~--- 417 (464)
+++..+.-|.+.+.+++..|+..|.-.+........--=...+..+...+..-++ .-.......+..++.+.+..
T Consensus 209 vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~ 288 (1549)
T KOG0392|consen 209 VLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLF 288 (1549)
T ss_pred HHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHH
Confidence 5667777777777888888877777666432111100001233334333332222 00111112222233222110
Q ss_pred HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 418 RGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 418 ~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
...=.+.|.++.+.-++++.=..++..+...+..+.+...+.
T Consensus 289 ~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs 330 (1549)
T KOG0392|consen 289 EQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQS 330 (1549)
T ss_pred HHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 001112488899999998888889999999999988876443
No 342
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=37.80 E-value=65 Score=31.79 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=45.2
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--------------CHHhHHHHHHcCChHHHHHhhhc
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE--------------SVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~--------------~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
+...+..+++-|.+.+...|..|+.+|..++.+ -..+...+.+.|++++|..+|+.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345677888889888999999999999999864 12345568889999999999975
No 343
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.54 E-value=1e+02 Score=36.75 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=51.3
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE--SGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~--~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
.+.++++.|-..|.+.+..+|..|...++.+....... +.+ ...+...+.-+.+-++++|..++....++-.
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~---l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQ---LSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhh---hcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 34568899999999999999999999999887663221 111 2334445555666778888888877766544
No 344
>PLN03205 ATR interacting protein; Provisional
Probab=37.45 E-value=4.9e+02 Score=27.01 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=97.5
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccc---cchhhhhccCChHHHHHHhhc-----CChhhHHHHHHHHHHHhcCc
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALIE---ENKSSIGACGAIPPLVSLLIY-----GSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~---~~~~~i~~~g~i~~Li~lL~~-----~~~~v~~~A~~aL~nL~~~~ 332 (464)
.+++|+.+..-++..+...++..|..+-.|- +.+-.....--+-.|++++.. ....++..|+.+.--+....
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 4567788888888888888888888776652 222222223346666766643 35567778887766665532
Q ss_pred ---chHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCHhhHHHH-----------------------Hh-cCc
Q 012413 333 ---QNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIAEGREAI-----------------------VE-ENG 384 (464)
Q Consensus 333 ---~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~i-----------------------~~-~g~ 384 (464)
..+++|....+++.+-++|+.+ +..|+.+|+..|.-|-..+..-..+ -. ...
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsI 483 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKI 483 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHHH
Confidence 3567787777888888888644 5677888887776653322111111 00 113
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHHHHHhhcC
Q 012413 385 IAALVEAIED-----GSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 385 i~~Lv~lL~~-----~~~~v~~~A~~aL~~L~~~~ 414 (464)
+.-|.+++.. .+.+++..++..|..++...
T Consensus 484 legLAeCiac~~~s~~dIeLck~aiimLAflASSG 518 (652)
T PLN03205 484 FEGLADCLTSPRKTSEDLELCRNVIMILALAASSG 518 (652)
T ss_pred HHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcC
Confidence 4555666652 35778889999999998754
No 345
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=37.34 E-value=1.5e+02 Score=27.29 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=44.8
Q ss_pred hHHHHHHcCCHHHHHHhhcCC---C---------------HHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhc
Q 012413 334 NKERAVSAGAVRPLVGMLAGQ---G---------------EGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~---~---------------~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
.+..+...|++..++.+|..+ . ..+...+...|..++ ++.+++..+.+. ++.++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 344455678888888877531 1 245677889999999 667777777663 2222333333
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc
Q 012413 395 GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 395 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
.....-..+..+|..+..++++....+.+.. +..++.++..
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHH
Confidence 2222224567777777777777766666554 7888888866
No 346
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=36.74 E-value=3.5e+02 Score=28.42 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChH-HHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHH-hcCcHHHHHHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVP-ALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLIT-NAGAIKSLVYVL 269 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~-~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~-~~g~i~~Lv~lL 269 (464)
..|..|+++|+.++..-+...- ..... .|+.+|++....-|..|+.+|..-+........-. -....+.|..+|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~----~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSL----QEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 4688899999988866322111 11223 68899999888888899999988876432211100 112345566666
Q ss_pred cc
Q 012413 270 KT 271 (464)
Q Consensus 270 ~~ 271 (464)
..
T Consensus 178 ~~ 179 (441)
T PF12054_consen 178 EN 179 (441)
T ss_pred cC
Confidence 63
No 347
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.12 E-value=4.2e+02 Score=30.97 Aligned_cols=135 Identities=13% Similarity=0.060 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCcHHH
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN--AGAIKS 264 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~ 264 (464)
.+-.+++|..|+..|+--.+.-| ..+.+...++.+-..|.+.+.+||..++.+|-.|-.+.+....+.. ..-=.-
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 45688999999999987776655 5677888899999999999999999999999999876543322211 112223
Q ss_pred HHHHH-ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 012413 265 LVYVL-KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 265 Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~ 329 (464)
+|.+. ++-+..|+...+..+..+... .+....-+..+..++-+.+++++.+|...|..=.
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~~-----g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSSS-----GLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhcc-----cccChhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 44444 455677777776666655332 1222334667788888888888888877665443
No 348
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=36.00 E-value=1.4e+02 Score=30.74 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=61.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcC
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQ-TGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~~L~~~ 455 (464)
.++..|..-|.+.++.|...|+..+..+...+ ...+..+.......-|..++. +.++.|+++-...+...++.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999999988764 345677888889999999998 66889999988888877763
No 349
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=35.51 E-value=3.3e+02 Score=29.72 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=90.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh--cCcH
Q 012413 185 GLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN--AGAI 262 (464)
Q Consensus 185 ~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i 262 (464)
...+-++.+|..|...|+.-.+.-|. .+.+-.++...-.+|.+.+..++.....+|-.|+........+.+ ..--
T Consensus 283 Ry~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk 359 (740)
T COG5537 283 RYIDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFK 359 (740)
T ss_pred hccchhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 33456777888888888777766543 344545777788889999999999999999999886554443322 2234
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
..+++++..+..-||..+...+..|.... ..+...|-.+..++-+..+.-++.-...+.++|+
T Consensus 360 ~rILE~~r~D~d~VRi~sik~l~~lr~lg-----~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 360 DRILEFLRTDSDCVRICSIKSLCYLRILG-----VLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHhc-----ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 45666666665558888888887764321 1122234455566666666655555555555655
No 350
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.29 E-value=5e+02 Score=31.66 Aligned_cols=200 Identities=14% Similarity=0.020 Sum_probs=114.6
Q ss_pred hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchH-HHHHhcCcHHHHHHHHccC----CHHHHHHHHHHHH
Q 012413 211 NRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTG----TETSKQNAACALM 285 (464)
Q Consensus 211 ~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~----~~~v~~~a~~aL~ 285 (464)
.|..+++.|..-.+...+.+.|+.++..|++++...-.|-++. ....+.-.+-.++.+.+.+ ++.+-...+.
T Consensus 1431 ~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~al--- 1507 (1758)
T KOG1791|consen 1431 IRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICAL--- 1507 (1758)
T ss_pred cchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHH---
Confidence 3446778899999999999999999999988886655444442 2222222222222222221 1111110000
Q ss_pred HhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHH---HHHHH
Q 012413 286 SLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEG---MAEKA 362 (464)
Q Consensus 286 ~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~---v~~~A 362 (464)
.+.....++-.+........-..|+. ..+++-.++|..-.++-+...+ .++-.
T Consensus 1508 ----------------F~A~~~~ill~Ps~~ly~~In~~L~~--------s~~vdlq~iP~F~~ffySs~~e~~t~R~Wv 1563 (1758)
T KOG1791|consen 1508 ----------------FIAFFSDILLVPSEGLYFPINGLLLS--------SKIVDLQGIPIFHRFFYSSVFEHHTEREWV 1563 (1758)
T ss_pred ----------------HHHHHHHHHcCCccccchhHHHHHHh--------hhhcccCCCccHHHHHHhccccccchhhhh
Confidence 11112222223322222222222221 2346666777777777544332 34555
Q ss_pred HHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC
Q 012413 363 MVVLSLLAGIAEGREAIVEENGIAALVEAIEDG--SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG 437 (464)
Q Consensus 363 ~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 437 (464)
...+...-......+.....+....++....+. +..-+..-..+|++=..........+...|....+..++.++
T Consensus 1564 l~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~ 1640 (1758)
T KOG1791|consen 1564 LELVSKGLKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSS 1640 (1758)
T ss_pred HHHHHHHhcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcccc
Confidence 555555555666677777788888888888764 455555667777765555556666777789999999999886
No 351
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=34.51 E-value=1.5e+02 Score=30.48 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=62.0
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCc-hhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRS-DNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~-~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~ 248 (464)
+-...++.+.+.|...++.|...|+..|..++.+.. ..|..|....+...|..++. +.++.|.+....++.+.+.
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999998887743 45667777888999999998 5788888888877777654
No 352
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=33.74 E-value=4.5e+02 Score=25.48 Aligned_cols=174 Identities=17% Similarity=0.142 Sum_probs=99.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCch--------HHHHHhcCcHHHHHHHHccCC----HHHHHHHHHHHHH
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENN--------KTLITNAGAIKSLVYVLKTGT----ETSKQNAACALMS 286 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~--------~~~i~~~g~i~~Lv~lL~~~~----~~v~~~a~~aL~~ 286 (464)
|..+.+++=|++. .....+...|..|+..++. +-.+.-.+.+|.++.-+.+++ ......+|..|..
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 3344444445443 3455667777777654322 222223445677777776666 2445577788888
Q ss_pred hcccccchhhhhccCChHHHHHHhhcC----ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHH
Q 012413 287 LALIEENKSSIGACGAIPPLVSLLIYG----SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKA 362 (464)
Q Consensus 287 Ls~~~~~~~~i~~~g~i~~Li~lL~~~----~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A 362 (464)
+|... ....+..++.....+ ..+..+.++..|+.-.. ++ .+...+..|+.+|..+.+.++...
T Consensus 142 ~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 142 VAEAQ-------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHhC-------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHH
Confidence 76321 122344444444433 22344445554443211 11 123366778899988888999999
Q ss_pred HHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 363 MVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 363 ~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
+.+|..+-...+.+.. ...+.+.+|+++++.+- -..|..+|-++.
T Consensus 209 L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 209 LQILKVLLPHVDMRSP-HGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHhccccCCCC-cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 9999999865443333 44568999999997642 344555554443
No 353
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=32.85 E-value=7.8e+02 Score=30.95 Aligned_cols=236 Identities=13% Similarity=0.051 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh----cCCCHHHHHHHHHHHHHhcCCCchHHH----HHhcCcHHHH
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL----KCSDPWTQEHSVTALLNLSLHENNKTL----ITNAGAIKSL 265 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL----~~~~~~v~~~A~~aL~~La~~~~~~~~----i~~~g~i~~L 265 (464)
|.-++.-|..++..+- .|-.+.....+..+...+ .+.+..+...|+..|..++..--.+.. =.....+.++
T Consensus 1109 r~FsLqKLveIa~~Nm-~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNM-NRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred chhHHHHHHHHHHhcc-cchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 4455666666665543 244444455554454432 234677888888888787752111111 1123467777
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc----CChhhHHHHHHHHHHHhcCcch------
Q 012413 266 VYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY----GSSRGKKDALTTLYKLCSLKQN------ 334 (464)
Q Consensus 266 v~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~A~~aL~nL~~~~~~------ 334 (464)
..++.. .+.+++...+.++.+|..... ..| .. |++.++.++.. .++.+.+.|..++..+...--.
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~ 1263 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETE 1263 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 776654 577999999999998854311 112 22 68888888763 4677888888888777642100
Q ss_pred HHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhC----CHhh------------------------HHHHH-----
Q 012413 335 KERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAG----IAEG------------------------REAIV----- 380 (464)
Q Consensus 335 ~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~----~~~~------------------------~~~i~----- 380 (464)
...+.+ .|..|..+.... +.++-..|+..|++++. .+.. -..+.
T Consensus 1264 ~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1341 (1780)
T PLN03076 1264 TTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDH 1341 (1780)
T ss_pred hhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhH
Confidence 112211 344444444332 35566667766765531 0000 00000
Q ss_pred hcCcH---HHHHHHHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHH---cCChHHHHHhhhc
Q 012413 381 EENGI---AALVEAIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVR---EGGIPPLVALSQT 436 (464)
Q Consensus 381 ~~g~i---~~Lv~lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~---~g~i~~Lv~lL~s 436 (464)
....+ ..|..+..+...+||..|+.+|..+... +......+|+ .+++-++++.++.
T Consensus 1342 ~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~ 1404 (1780)
T PLN03076 1342 LYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRH 1404 (1780)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01223 3344445578899999999999887643 1112222333 2577777777653
No 354
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=32.82 E-value=5.8e+02 Score=26.44 Aligned_cols=231 Identities=12% Similarity=-0.001 Sum_probs=115.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC--Cch
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLH--ENN 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~--~~~ 252 (464)
...+..|+.++.++|+..|......|.++-..-...|..+.. .....+...+.. ..+.-....+..++.+... .+.
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence 578999999999999999999999999987776666666543 344555555543 3444455666666666553 122
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHH-HHHHHHHHHHh-cccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETS-KQNAACALMSL-ALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v-~~~a~~aL~~L-s~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
+.... .=....|+.|.+.+.-.. -..-..++... ..++.....+ +..|+..=-..++.=...-+.-+..+..
T Consensus 211 k~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 211 KEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp -HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred cHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 21110 001222333333332100 01111111111 1111111111 1111111111222222233344444444
Q ss_pred C-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhc-----CCHHHHHH
Q 012413 331 L-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIED-----GSVKGKEF 402 (464)
Q Consensus 331 ~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~-----~~~~v~~~ 402 (464)
. ++..-.-+..-.+..+...+.+++..|.+.|+....| +.....+.+ ...++.+...+.. -+..++..
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n----~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~ 360 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN----EYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNL 360 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS----HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC----HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2 2111111223366777788888898888888755432 222222222 2256666666643 36889999
Q ss_pred HHHHHHHHhhcCHHh
Q 012413 403 AVLTLLQLCAESVKN 417 (464)
Q Consensus 403 A~~aL~~L~~~~~~~ 417 (464)
|..++..|...++..
T Consensus 361 a~~vl~~l~~~d~~l 375 (409)
T PF01603_consen 361 AQNVLKILMEMDPKL 375 (409)
T ss_dssp HHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHhCHHH
Confidence 999999998766553
No 355
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=32.44 E-value=4.5 Score=43.66 Aligned_cols=150 Identities=14% Similarity=0.063 Sum_probs=91.7
Q ss_pred HHHHhcccccchhhhhccCC-hHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHH
Q 012413 283 ALMSLALIEENKSSIGACGA-IPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEK 361 (464)
Q Consensus 283 aL~~Ls~~~~~~~~i~~~g~-i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~ 361 (464)
...+|+++.+++..+...-- +..|+-.-.-.-..+.-.|+.+++||+.-.. ..+-....+..+.+-+.+.+..+...
T Consensus 16 v~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqpt~--~e~S~~~~L~t~t~Gi~S~drflimr 93 (847)
T KOG2312|consen 16 VSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQPTS--GESSLIKQLLTPTRGISSPDRFLIMR 93 (847)
T ss_pred eeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCcch--hhhhHHHHHhhhccCCCCCCceeEee
Confidence 34567777777777665432 2333322222345677889999999988211 11111112334444556777888899
Q ss_pred HHHHHHHHhCCHhhHH---HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH-cCChHHHHHhh
Q 012413 362 AMVVLSLLAGIAEGRE---AIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR-EGGIPPLVALS 434 (464)
Q Consensus 362 A~~aL~nLa~~~~~~~---~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL 434 (464)
++.+|.+||+.+.+-. ..+........+..+.-.+.-+......+|+.|.......+..|.+ .+.|..|+.+.
T Consensus 94 ~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 94 ALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred ccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 9999999997655433 3344556666666666556556666667777776655566666655 46777776654
No 356
>KOG4708 consensus Mitochondrial ribosomal protein MRP17 [Translation, ribosomal structure and biogenesis]
Probab=32.33 E-value=18 Score=31.20 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=26.4
Q ss_pred CCCCCCCCchhhHHhhhcchhhhhhhcccccCC
Q 012413 19 NLYTPPSASSTKIHRSIGRSMRTIRSNLYQTDN 51 (464)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (464)
+|| .+-....+++|..++-.++||..+++.|.
T Consensus 69 ~f~-ss~~v~~ei~~~l~~D~dviR~~IVKv~~ 100 (141)
T KOG4708|consen 69 TFY-SSPAVQSEIKRILKRDPDVIRWLIVKVDD 100 (141)
T ss_pred eec-CCHHHHHHHHHHHhcChhhHHhhheeccc
Confidence 356 44455667999999999999999999887
No 357
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.30 E-value=8.1e+02 Score=27.97 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=30.6
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChH
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIP 304 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~ 304 (464)
.+|.++..|+.+..-+-.+|+.++-.+-.. +.+...+..++-++
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~ia 543 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIA 543 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcc
Confidence 468888999999999999999999775544 33344454444443
No 358
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.05 E-value=62 Score=32.77 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=50.5
Q ss_pred HHHHHHHHHhc-CcchHHHHHHcCCHHHHHHh--hcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHh
Q 012413 320 DALTTLYKLCS-LKQNKERAVSAGAVRPLVGM--LAGQGEGMAEKAMVVLSLLAG-IAEGREAIVE 381 (464)
Q Consensus 320 ~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~l--L~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~ 381 (464)
+..+.+++||. ++++++++.+-||++.++.- +.+.++-+++....|+.+|.. +.++++.+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 36778999998 88999999999999987775 356678999999999999995 4566666654
No 359
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=31.85 E-value=5.3e+02 Score=25.69 Aligned_cols=211 Identities=13% Similarity=0.048 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCC
Q 012413 236 QEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGS 314 (464)
Q Consensus 236 ~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~ 314 (464)
|...+.+|..+.. .. ....++..|..++.. .++......+.++..=...- ..-.....+..+.+=+.+..
T Consensus 4 r~~~~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk 74 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS-----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKK 74 (339)
T ss_pred HHHHHHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCC
Confidence 3344555555544 22 223355667776655 57777777777776522110 11122334555555666667
Q ss_pred hhhHHHHHHHHHHHhcCcc--hHHHHHHcCCHHHHHHhhcC----CCHHH----HHHHHHHHHHHhC--CHhhHH-HH--
Q 012413 315 SRGKKDALTTLYKLCSLKQ--NKERAVSAGAVRPLVGMLAG----QGEGM----AEKAMVVLSLLAG--IAEGRE-AI-- 379 (464)
Q Consensus 315 ~~v~~~A~~aL~nL~~~~~--~~~~iv~~g~v~~Lv~lL~~----~~~~v----~~~A~~aL~nLa~--~~~~~~-~i-- 379 (464)
+.+|+.-+..++.+..... ....++ ...+|.|++.++. +-... ...|...+. +.. .+.... .+
T Consensus 75 ~~vR~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~ 152 (339)
T PF12074_consen 75 PPVRRAWLLCLGEALWESPNSDSLKFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISF 152 (339)
T ss_pred CcHHHHHHHHHHHHHhhccCchHHHHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhh
Confidence 7789888888777765111 122222 2366777777742 22211 112222222 111 111000 00
Q ss_pred --HhcCcHHHHH---HHHhc-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHH
Q 012413 380 --VEENGIAALV---EAIED-GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGY 451 (464)
Q Consensus 380 --~~~g~i~~Lv---~lL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~~ 451 (464)
...+-=+.++ ++... .+++.....+.++..+..+.......-.....-..++-++-+. ...+|+.|..+|+.
T Consensus 153 ~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~ 232 (339)
T PF12074_consen 153 WSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKK 232 (339)
T ss_pred hhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 0000000000 12222 3455555666666666654322111000123446677777776 67899998888887
Q ss_pred hhcCCC
Q 012413 452 LREPRQ 457 (464)
Q Consensus 452 L~~~~~ 457 (464)
+....+
T Consensus 233 l~~~~~ 238 (339)
T PF12074_consen 233 LYASNP 238 (339)
T ss_pred HHHhCh
Confidence 765544
No 360
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.57 E-value=3.3e+02 Score=23.64 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=54.7
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHH-HHHhhhc---CCHHHHHHHHHHHHHhhcC
Q 012413 384 GIAALVEAIED-GSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPP-LVALSQT---GSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 384 ~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~-Lv~lL~s---~~~~v~~~A~~aL~~L~~~ 455 (464)
++..|..-|.+ .++.++..|+..|-.+.... ......+...+.+.. |++++.. .+..|+.+....+...++.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 56666676764 58889999988888887654 455667777888987 9999863 2459999999999887764
No 361
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.09 E-value=8.6e+02 Score=27.90 Aligned_cols=175 Identities=12% Similarity=0.068 Sum_probs=87.4
Q ss_pred HHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC------C-chHHHHHhcCcHHHHHHHHccC--CHHHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLH------E-NNKTLITNAGAIKSLVYVLKTG--TETSKQNAAC 282 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~------~-~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~ 282 (464)
+.+-+...++.++.++.. .++.++..|...|+.++.. + ...+.+...+.|..|+..+-.+ ..........
T Consensus 184 q~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~ 263 (838)
T KOG2073|consen 184 QWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGII 263 (838)
T ss_pred HHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHH
Confidence 344456789999999876 5689999999999998764 2 2445666666676666544332 2223333333
Q ss_pred HHHHhcccccchhhhhccCChHHHHHHhh----cCChhhHHHHHHHHHHHhcCcchHHHHHH---cCCHHHHHHhhcCCC
Q 012413 283 ALMSLALIEENKSSIGACGAIPPLVSLLI----YGSSRGKKDALTTLYKLCSLKQNKERAVS---AGAVRPLVGMLAGQG 355 (464)
Q Consensus 283 aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~----~~~~~v~~~A~~aL~nL~~~~~~~~~iv~---~g~v~~Lv~lL~~~~ 355 (464)
.|..+.... +..+ .. +....++. ..++.+....++++..-.. +..+.+.+ .+.++.-...|..+=
T Consensus 264 vlI~ll~~~--r~~~-~~---~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~--dF~~lL~~~~~~~~l~tt~g~l~pPL 335 (838)
T KOG2073|consen 264 VLISLLNPR--RDTV-ET---NSTTTILSQPPSERDPIVLNELLGAMEPRLG--DFVQLLLEPEKLDLLETTYGELEPPL 335 (838)
T ss_pred HHHHhcCcc--cccc-cc---cceeeeecCCccccCccchHHHHHHHHHHHH--HHHHHhcCCccchhhhhhhhccCCCc
Confidence 333222110 0000 00 00011111 1133333333333322100 00000000 001111222222223
Q ss_pred HHHHHHHHHHHHHHh--CCHhhHHHHHhcCcHHHHHHHHhcC
Q 012413 356 EGMAEKAMVVLSLLA--GIAEGREAIVEENGIAALVEAIEDG 395 (464)
Q Consensus 356 ~~v~~~A~~aL~nLa--~~~~~~~~i~~~g~i~~Lv~lL~~~ 395 (464)
...|.+.+..++.|- .+......+...+.+..+++++...
T Consensus 336 G~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 336 GFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred chHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 445777888888776 4556677777788888888888864
No 362
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=31.04 E-value=2e+02 Score=30.60 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=49.9
Q ss_pred HHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcC---CC-----------chHHHHHhcCcHHHHHHHHcc-CCHHH
Q 012413 213 VLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSL---HE-----------NNKTLITNAGAIKSLVYVLKT-GTETS 276 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~---~~-----------~~~~~i~~~g~i~~Lv~lL~~-~~~~v 276 (464)
+.+.+.+.|+.|+.+|.. .+++++..|+..|+.|.. +. ..-..++....|..|+..+-. .....
T Consensus 56 ewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~ 135 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSS 135 (475)
T ss_pred HHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcch
Confidence 445568999999999974 678899999999888743 11 122345556667766664442 33555
Q ss_pred HHHHHHHHHHhc
Q 012413 277 KQNAACALMSLA 288 (464)
Q Consensus 277 ~~~a~~aL~~Ls 288 (464)
..+++.++..|-
T Consensus 136 lvn~v~IlieLI 147 (475)
T PF04499_consen 136 LVNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 363
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.48 E-value=4.6e+02 Score=29.55 Aligned_cols=67 Identities=22% Similarity=0.071 Sum_probs=52.4
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
...|+.|..+.++.=..++..++.++..|.+..|+.-. ..+..|++-|.+++..+-.+|.-.|..|-
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~ 369 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLL 369 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHH
Confidence 45677777777788899999999999999988777444 34677888888888788888777776654
No 364
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.91 E-value=8.3e+02 Score=27.34 Aligned_cols=219 Identities=16% Similarity=0.145 Sum_probs=125.6
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhcccccchhhhhccCChHH
Q 012413 227 LLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLALIEENKSSIGACGAIPP 305 (464)
Q Consensus 227 lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~ 305 (464)
+-.+.|+..|..|-.+|..++.+++.-.+ ---+|..+ .+..+..|..+|..+.....--....+...-..
T Consensus 14 LY~s~D~~~R~~AE~~L~e~s~speclsk---------Cqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrldir~Y 84 (1082)
T KOG1410|consen 14 LYESTDPTARHRAEKALAELSESPECLSK---------CQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLDIRNY 84 (1082)
T ss_pred HHhcCCHHHHHHHHHHHHHHccCHHHHHH---------HHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 34568899999999999999988875432 11223332 345566677777776543211111111222345
Q ss_pred HHHHhhcCChh----hHHHHHHHHHHHhcC---cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC------
Q 012413 306 LVSLLIYGSSR----GKKDALTTLYKLCSL---KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI------ 372 (464)
Q Consensus 306 Li~lL~~~~~~----v~~~A~~aL~nL~~~---~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~------ 372 (464)
+++.|..+.|. +....+..++.|++- ..++...+=...|..+.+.|...+.+.-.-+..+|..|...
T Consensus 85 ilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~~ 164 (1082)
T KOG1410|consen 85 ILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQADG 164 (1082)
T ss_pred HHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCCC
Confidence 66666665443 444455556666652 34555555455788888888877666666666677766521
Q ss_pred --H--hhHH---HHHhcC---cHHHHHHHHhcC-----CHHHHHHHHHHHHHHhhc-----------------------C
Q 012413 373 --A--EGRE---AIVEEN---GIAALVEAIEDG-----SVKGKEFAVLTLLQLCAE-----------------------S 414 (464)
Q Consensus 373 --~--~~~~---~i~~~g---~i~~Lv~lL~~~-----~~~v~~~A~~aL~~L~~~-----------------------~ 414 (464)
+ .+|+ .+.+.. +...-+.+|+.. +++.+..-...+.+|.-. .
T Consensus 165 ~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQIP 244 (1082)
T KOG1410|consen 165 MDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQIP 244 (1082)
T ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccccccceecC
Confidence 1 1222 222222 223333444432 234344434444333220 1
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
...|..+.+...++.+.++.++-.+...+.|...|-.++.
T Consensus 245 TsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlAS 284 (1082)
T KOG1410|consen 245 TSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLAS 284 (1082)
T ss_pred cHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHH
Confidence 2347778888889999999999888888888888877764
No 365
>PRK09169 hypothetical protein; Validated
Probab=29.82 E-value=1.3e+03 Score=29.66 Aligned_cols=75 Identities=11% Similarity=-0.059 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCchH
Q 012413 177 PTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 177 ~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
..+..+...|.+ ++......|+..+.....+ ..+..+ +.-.|..+++-|.. +++..+..+..+=..|+..+...
T Consensus 123 ~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~--~~~~~l-~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~ 199 (2316)
T PRK09169 123 AQLAHLGNKLSKYPDRPACMAAIAWIAGQLLD--ALREAL-DAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLL 199 (2316)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHhhh-hhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHH
Confidence 344455555543 4444444444333322111 122222 33456666666665 34444444444434444444444
Q ss_pred H
Q 012413 254 T 254 (464)
Q Consensus 254 ~ 254 (464)
+
T Consensus 200 ~ 200 (2316)
T PRK09169 200 Q 200 (2316)
T ss_pred H
Confidence 3
No 366
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.64 E-value=3.6e+02 Score=30.03 Aligned_cols=57 Identities=21% Similarity=0.104 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhc
Q 012413 232 DPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTG-TETSKQNAACALMSLA 288 (464)
Q Consensus 232 ~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls 288 (464)
.+..|..++..|+.+... +.-...|.+...++.|+++|+.+ +..+...|+.+|.-|-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 467889999999999885 66667888999999999998765 5666677777776653
No 367
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=27.45 E-value=1.1e+02 Score=28.24 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=43.2
Q ss_pred hhhhhccCChHHHHHHhhcC---C---------------hhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC
Q 012413 294 KSSIGACGAIPPLVSLLIYG---S---------------SRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ 354 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~lL~~~---~---------------~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~ 354 (464)
+..+...|++..++++|..+ . ..+...+...|..++. +++|+..+.+ .++.++..+...
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~ 113 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQL 113 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHh
Confidence 34455577788888887653 1 2466788999999999 5578877766 244334444332
Q ss_pred CHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 355 GEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 355 ~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
....-..+..+|..+- .+.+....+.+.. |..++.++.... .+..-+..|..||.
T Consensus 114 ~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 114 QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCV 169 (207)
T ss_dssp CH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhcc
Confidence 2222234556666666 4555666665544 889999997633 22334555666654
No 368
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.41 E-value=9e+02 Score=27.21 Aligned_cols=190 Identities=14% Similarity=0.140 Sum_probs=98.1
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHh--cCCCchHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhcccccchhh
Q 012413 220 AVPALVPLLKCSDPWTQEHSVTALLNL--SLHENNKTLITNAGAIKSLVYVLKTGT-ETSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 220 ~i~~Ll~lL~~~~~~v~~~A~~aL~~L--a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
-+.+++.-|+....-+...++.+|.-- +..+..|..+...|++..+++.|.+.. ......+..+|+.|-.....-..
T Consensus 333 d~~yiLStlq~~~~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d~lnmd 412 (865)
T KOG2152|consen 333 DLEYILSTLQSALLPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRDKLNMD 412 (865)
T ss_pred hHHHHHhhhhhccccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhhhhccc
Confidence 355566666554333333333333322 335788999999999999999987753 33344444466665433221110
Q ss_pred hhccCChHHHHHHhhcC----ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcC-----------CCHHHHHH
Q 012413 297 IGACGAIPPLVSLLIYG----SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG-----------QGEGMAEK 361 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~----~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-----------~~~~v~~~ 361 (464)
.+.-.+..++.||.-+ +++.+..-....+. .|..|...... .....-..
T Consensus 413 -ldf~Slelmi~LL~~ek~~gS~e~~~~~~n~~~e---------------vir~L~e~~~~gG~~~h~n~~~~t~~~~~l 476 (865)
T KOG2152|consen 413 -LDFLSLELMIHLLRLEKFEGSHESRDKFTNLVKE---------------VIRSLCELQLRGGQKVHLNMRNETLGPSSL 476 (865)
T ss_pred -ccchhHHHHHHHHhhhcccCChhhHHHHHHHHHH---------------HHHHHHHHHHhcCCcccccccCCCCCchhh
Confidence 1223455666666532 33333222221111 22233332211 01111133
Q ss_pred HHHH-HHHHhC---CHhhHHHHHhcCcHHHHHHHHhcC---------CHHH---HHHHHHHHHHHhhcCHHhHHHHHHcC
Q 012413 362 AMVV-LSLLAG---IAEGREAIVEENGIAALVEAIEDG---------SVKG---KEFAVLTLLQLCAESVKNRGLLVREG 425 (464)
Q Consensus 362 A~~a-L~nLa~---~~~~~~~i~~~g~i~~Lv~lL~~~---------~~~v---~~~A~~aL~~L~~~~~~~~~~i~~~g 425 (464)
++.+ +..|+. ..-.+..+..-|+.+.++..+... ...+ ...|...|.+.+.+++.++..++..|
T Consensus 477 amet~vl~lsSk~~~d~~k~elr~Lg~lq~iv~~i~~~~~~~~~~~~e~~~~~tL~rC~rvles~s~hn~snq~yLis~g 556 (865)
T KOG2152|consen 477 AMETLVLILSSKRAGDWFKSELRNLGGLQHIVSKIETNVSPTSDNGDESSVILTLERCLRVLESVSVHNGSNQGYLISLG 556 (865)
T ss_pred hhheeEEEEeccccchhHHHHHHhcchHHHHHHHHHhccCcCCCCcchhhHHHhHHHHHHHhhcccccCcchhHHHHhcc
Confidence 4444 222322 244577788888888887777641 1122 25677777777777778877777654
No 369
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.79 E-value=2.1e+02 Score=24.94 Aligned_cols=80 Identities=14% Similarity=-0.002 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHh
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITN 258 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~ 258 (464)
-..+..+|.++++++|..|+.||... .++ .+. ..-+.|-.++++ ...+..-.... +..+...-+.-..
T Consensus 19 ~~~~~~LL~~~d~~vQklAL~cll~~--k~~----~l~--pY~d~L~~Lldd--~~frdeL~~f~--~~~~~~~I~~ehR 86 (141)
T PF07539_consen 19 YDALLRLLSSRDPEVQKLALDCLLTW--KDP----YLT--PYKDNLENLLDD--KTFRDELTTFN--LSDESSVIEEEHR 86 (141)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh--CcH----HHH--hHHHHHHHHcCc--chHHHHHHhhc--ccCCcCCCCHHHH
Confidence 34456788999999999999999543 211 111 112344555543 33333322221 2222222233345
Q ss_pred cCcHHHHHHHHc
Q 012413 259 AGAIKSLVYVLK 270 (464)
Q Consensus 259 ~g~i~~Lv~lL~ 270 (464)
.+.+|.++++|-
T Consensus 87 ~~l~pvvlRILy 98 (141)
T PF07539_consen 87 PELMPVVLRILY 98 (141)
T ss_pred hHHHHHHHHHHH
Confidence 668888888773
No 370
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.79 E-value=2.3e+02 Score=30.06 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=58.3
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-hHHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHH
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-NRVLIGESGAVPALVPLLKCS--DPWTQEHSVTALLN 245 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-~r~~i~~~g~i~~Ll~lL~~~--~~~v~~~A~~aL~~ 245 (464)
++...++..|.+.+.+.++.++..|+..|-.+.++... ....|.+.++++-++.+.+.. +..||..++..|-.
T Consensus 34 ~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 34 GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 34467899999999998889999999988777777544 344677889999999988874 67889998888744
No 371
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=24.99 E-value=1.2e+03 Score=30.19 Aligned_cols=223 Identities=14% Similarity=0.060 Sum_probs=105.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhc--CcHHHHHHHH-----ccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 226 PLLKCSDPWTQEHSVTALLNLSLHENNKTLITNA--GAIKSLVYVL-----KTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 226 ~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~--g~i~~Lv~lL-----~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
..+...+++++..++..+..+-............ ..+...+..+ .++++..+......+. ..--....
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~la 562 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQLA 562 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhhhhc
Confidence 4455678888888877766665433221110000 0122222111 2234444433322222 00011123
Q ss_pred ccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc-hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhH
Q 012413 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGR 376 (464)
Q Consensus 299 ~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~ 376 (464)
..+-+..+...+.++.-.++..+...+++|+.... ..-.....--+..+-.+..+....+.+..+.-+..+. ..+...
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i 642 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLI 642 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHH
Confidence 33445556666677777888888888888887333 1111111111111111111111111222222111111 111111
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcC
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~~ 455 (464)
...+ ...+..++..+.+.+..+...++.+++.||.-.-.--....+ -.++.+.+.+.. ++..-+..+.+++.++...
T Consensus 643 ~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 643 SPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred Hhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 1111 234577777788888889999999999999654211111122 334445555544 4567778888888887653
No 372
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=24.64 E-value=8.5e+02 Score=29.91 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=70.3
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc-cCChHH
Q 012413 227 LLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA-CGAIPP 305 (464)
Q Consensus 227 lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~ 305 (464)
+|++.++.++..+......+-..-+ ......++..|+..+-+++..-...|+.+|..|+.. +...+.. +..|..
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~--~~~~l~~fa~~l~g 517 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK--NPSELQPFATFLKG 517 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHTHHHHHG
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 3456777777777776666544322 122344778898888888877778999999999853 2222222 233455
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHH
Q 012413 306 LVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGM 358 (464)
Q Consensus 306 Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v 358 (464)
+++.+.+-+..=.+....+|+.|+........-+....--.+-+.|.+.+...
T Consensus 518 iLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~ 570 (1426)
T PF14631_consen 518 ILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKY 570 (1426)
T ss_dssp GGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHH
Confidence 55666665555566778888888764321111122223333444566666555
No 373
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.64 E-value=48 Score=35.08 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=50.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHH-hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 345 RPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIV-EENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 345 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
..+-.+....+++++.+|..++++++-..++|...+ +...-..+++++..+.+++-..++.++.-+..
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 344444456788999999999999997766655443 35567788888888888888888888877763
No 374
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.47 E-value=5.8e+02 Score=29.03 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=24.6
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLA 205 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La 205 (464)
...++.|+..|+.++.-|-..|+.++-.+-
T Consensus 497 m~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 497 MALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 458889999999999888888988885554
No 375
>PLN03205 ATR interacting protein; Provisional
Probab=23.67 E-value=2.2e+02 Score=29.45 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=88.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH---HHHhcCcHHHHHHHHc-----cCCHHHHHHHHHHHHHhccc
Q 012413 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT---LITNAGAIKSLVYVLK-----TGTETSKQNAACALMSLALI 290 (464)
Q Consensus 220 ~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~---~i~~~g~i~~Lv~lL~-----~~~~~v~~~a~~aL~~Ls~~ 290 (464)
.+++|+.+..-++..+...++++|..+-.| -.++. .-.+.+.+.. ++++. ...+.++..|+.+.--+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsL-fElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSL-FELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHH-HHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 355666666667777777777776665443 12222 2223444433 33332 23556777777666554443
Q ss_pred c---cchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcchHHHHH--------------------HcC----
Q 012413 291 E---ENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQNKERAV--------------------SAG---- 342 (464)
Q Consensus 291 ~---~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~iv--------------------~~g---- 342 (464)
. ..++.++..-.+..+.++|+.+ -..|++.|+..|.-|...+..-..|- ...
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSs 482 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGK 482 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHH
Confidence 2 3467777777889999999886 56799999988776655443222221 011
Q ss_pred CHHHHHHhhcCC-----CHHHHHHHHHHHHHHhC
Q 012413 343 AVRPLVGMLAGQ-----GEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 343 ~v~~Lv~lL~~~-----~~~v~~~A~~aL~nLa~ 371 (464)
.+..|-+++... +-++...+...|+.+|.
T Consensus 483 IlegLAeCiac~~~s~~dIeLck~aiimLAflAS 516 (652)
T PLN03205 483 IFEGLADCLTSPRKTSEDLELCRNVIMILALAAS 516 (652)
T ss_pred HHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHh
Confidence 233344444332 34568889999999984
No 376
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.52 E-value=4.1e+02 Score=31.98 Aligned_cols=204 Identities=14% Similarity=0.082 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHH-h-cCChHHHHHhhc--CCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIG-E-SGAVPALVPLLK--CSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY 267 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~-~-~g~i~~Ll~lL~--~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ 267 (464)
..+..++.++.+.+.+.......+. + .|.+-+...+.. ....+++.....+|.++-..+... . . .| -+.+++
T Consensus 811 s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~-l-l-~~-w~sV~e 886 (1610)
T KOG1848|consen 811 SILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEH-L-L-HG-WQSVFE 886 (1610)
T ss_pred HHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchh-h-c-cc-cHHHHH
Confidence 3455556666666655444433332 2 344444433332 356677888888888876433211 1 1 11 444444
Q ss_pred HHcc-------CCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcch-HHH
Q 012413 268 VLKT-------GTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQN-KER 337 (464)
Q Consensus 268 lL~~-------~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~-~~~ 337 (464)
++++ ....+.+.+-.+|.-++.+- ..-..=.-.+.|..+....+. .|..+-..|.+.+|+++..=.+ ++.
T Consensus 887 ml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S 966 (1610)
T KOG1848|consen 887 MLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFS 966 (1610)
T ss_pred HHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhc
Confidence 4432 23456666666776666541 110000112344555544443 4777888899999988764333 111
Q ss_pred HHHcCCHHHHHHhhcC--CCHHHHHHHHHH--HHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHH
Q 012413 338 AVSAGAVRPLVGMLAG--QGEGMAEKAMVV--LSLLAGIAEGREAIVEENGIAALVEAIEDGSVKG 399 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~~--~~~~v~~~A~~a--L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 399 (464)
.-+.+--...++-+.+ +...+..+++|. +.+|+..-+.-..-++.|+++.+.+.+.+.....
T Consensus 967 ~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l 1032 (1610)
T KOG1848|consen 967 TSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKL 1032 (1610)
T ss_pred cchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccC
Confidence 1222222222232222 223333344432 3333321111123344577777777777544333
No 377
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=22.59 E-value=9.6e+02 Score=31.08 Aligned_cols=196 Identities=18% Similarity=0.064 Sum_probs=101.4
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchh
Q 012413 218 SGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKS 295 (464)
Q Consensus 218 ~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~ 295 (464)
.+.+..+...+.+....++..+...+++++.. +...-.-....-+..+-.+..++-.-+....+.-+..+... ...-.
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~ 643 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLIS 643 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence 34455556666666777888888888887763 31111111111222222222222222222222222221111 00000
Q ss_pred hhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc-hHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhCCH
Q 012413 296 SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~ 373 (464)
..+ ...+..++..+.+....+.+.+..++..||.... .....++ ..++.+.+.+.+- ...-+..+.++++++....
T Consensus 644 ~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 644 PYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred hhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 000 1123566677778888899999999999988543 2222233 3445555554432 2334777889999998643
Q ss_pred hh--HHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCH
Q 012413 374 EG--REAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQLCAESV 415 (464)
Q Consensus 374 ~~--~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L~~~~~ 415 (464)
.. .......-++..|+..++.+ ...++..++..+++++...+
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 22 11111233566666666643 56678888888887776544
No 378
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=2.2e+02 Score=32.73 Aligned_cols=91 Identities=9% Similarity=0.030 Sum_probs=63.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhh--ccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc-c-hHH
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIG--ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK-Q-NKE 336 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~--~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~-~-~~~ 336 (464)
+..-..+|.+++..+|..++.+|..-.-. ......+. -...+|.++..+...++-+...|+.+|.+++... + .+.
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~s 884 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVAS 884 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34445677888889999998888753321 11122222 2568999999999999999999999999999943 3 334
Q ss_pred HHHHcCCHHHHHHhhcC
Q 012413 337 RAVSAGAVRPLVGMLAG 353 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~ 353 (464)
++.+ ..+|.|-.++.+
T Consensus 885 R~l~-dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 885 RFLE-DVLPWLKHLCQD 900 (1014)
T ss_pred HHHH-HHHHHHHHHHHH
Confidence 4443 477887766643
No 379
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=22.32 E-value=4e+02 Score=30.03 Aligned_cols=76 Identities=18% Similarity=0.076 Sum_probs=58.1
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHH
Q 012413 341 AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRG 419 (464)
Q Consensus 341 ~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~ 419 (464)
...|..|..+..++-..++..++..+++|-.+ ++.- ...+..||+-|.++...+-..|...|.+|.+..|..+.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE-----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE-----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCccee
Confidence 34677888887887788999999999998744 3322 23456788888899999999999999999887776554
Q ss_pred HH
Q 012413 420 LL 421 (464)
Q Consensus 420 ~i 421 (464)
.+
T Consensus 378 Vv 379 (988)
T KOG2038|consen 378 VV 379 (988)
T ss_pred eh
Confidence 44
No 380
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=1.2e+03 Score=26.19 Aligned_cols=68 Identities=22% Similarity=0.166 Sum_probs=40.7
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSD--PWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~--~~v~~~A~~aL~~La~ 248 (464)
...|++..|-..+++++..+|..|+--|+.--.+ . .++.+ ...|.+++.+.+ +++...|...|+.+.-
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaG-s-q~e~V-----~~lL~Pi~~d~~~~~ev~~~aslsLG~Ifv 518 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAG-S-QREEV-----LELLSPIMFDTKSPMEVVAFASLSLGMIFV 518 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcC-C-chHHH-----HHHHhHHhcCCCCchhHHHHHHhhcceeEE
Confidence 3456777777788888888877777766433222 1 12222 225667776644 4567777777777643
No 381
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.64 E-value=3.8e+02 Score=30.93 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHH----hccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC--
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLL----AKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-- 250 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~L----a~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-- 250 (464)
+.+...+.+|.+.+..+|.+|+.+|... +......-..+ .-.+|.++..+..++|-+...|+.+|.+++...
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 3556667788999999999999998543 33323222222 468999999999999999999999999998753
Q ss_pred chHHHHHhcCcHHHHHHHHcc
Q 012413 251 NNKTLITNAGAIKSLVYVLKT 271 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~ 271 (464)
-.+.++.+ ..+|.|-.++++
T Consensus 881 Fv~sR~l~-dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 881 FVASRFLE-DVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHH-HHHHHHHHHHHH
Confidence 23334333 366666655544
No 382
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=21.54 E-value=7.4e+02 Score=26.64 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=120.0
Q ss_pred chhHHHHHHhhhhh--cccchhhhHHHHHHh--hcCCCc-hhhhhcCcccCcccccCC---CchhhhhhhcccCc--hhh
Q 012413 96 SEDDYLNVSQAFSD--FSVCSSDISGELQRL--ASLPSP-ENILRQPNENNCQAELEP---EPEPCLGFLQRENF--STE 165 (464)
Q Consensus 96 ~e~~~~~L~~ll~~--~~~~r~~a~~~l~~l--a~~~~~-~~~~~~~~~~~~~e~~~p---~l~~lv~~L~~~~~--s~~ 165 (464)
=-|.|.-|.|.++. .-..+.|++--||.+ ++.+.. ..+.++.+ +- .+| +++..++|+-.... .+.
T Consensus 95 lnevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d----~s-YLpE~S~iRaai~f~i~~GkkGpe~ 169 (589)
T PF11229_consen 95 LNEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTD----FS-YLPESSFIRAAIDFLIEAGKKGPES 169 (589)
T ss_pred HHHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCc----cc-cCcchhHHHHHHHHHHHccccCCcc
Confidence 34678889998886 666788998888875 222111 11111111 00 222 23333444422110 000
Q ss_pred --------Hhhh---------cCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh
Q 012413 166 --------IIES---------ISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL 228 (464)
Q Consensus 166 --------i~~~---------~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL 228 (464)
+... ..+-++...+..|++. +..++++..|++.-..-++. ..+...++..=..|+++.-|
T Consensus 170 vpp~lvkvvl~~ia~vgeS~qyPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqS-SqsAa~fLg~WlsPpli~sL 246 (589)
T PF11229_consen 170 VPPSLVKVVLKPIATVGESYQYPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQS-SQSAAMFLGSWLSPPLIHSL 246 (589)
T ss_pred CCHHHHHHHHHHhhhcCCCCCCCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhccc-cccHHHHHHhhcCcchhhhh
Confidence 0110 1223455566666655 34678888888776666655 44455666666677777666
Q ss_pred cCCCHHHHHHHHHHHHHhcCC-Cc-hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChH
Q 012413 229 KCSDPWTQEHSVTALLNLSLH-EN-NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIP 304 (464)
Q Consensus 229 ~~~~~~v~~~A~~aL~~La~~-~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~ 304 (464)
.. .++..-..-+.-..++ ++ ..+.+++.-++..+-..-.-.++++...++..|..-.+.+.-.+.... +.+..
T Consensus 247 s~---~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~tte 323 (589)
T PF11229_consen 247 SV---NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTE 323 (589)
T ss_pred hH---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 44 3444444444444443 33 235555543443333333345678888888888875555443333333 45567
Q ss_pred HHHHHhhcC----ChhhHHHHHHHHHHHhcCc
Q 012413 305 PLVSLLIYG----SSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 305 ~Li~lL~~~----~~~v~~~A~~aL~nL~~~~ 332 (464)
.+.++|-++ +.+.-...+.+|..++..+
T Consensus 324 kIF~lLPn~i~~~eveLYi~vAkCLSEMtd~e 355 (589)
T PF11229_consen 324 KIFDLLPNKIQRNEVELYIGVAKCLSEMTDTE 355 (589)
T ss_pred HHHHhCcccccHHHHHHHHHHHHHHhhcCHHH
Confidence 777777443 3445556677777776643
No 383
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=20.96 E-value=1.3e+02 Score=20.16 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKL 201 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L 201 (464)
...+.+...+.++++.||.+|+..|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5666667889999999999998653
No 384
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=20.67 E-value=2.4e+02 Score=33.56 Aligned_cols=107 Identities=12% Similarity=0.047 Sum_probs=66.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhh-
Q 012413 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSI- 297 (464)
Q Consensus 220 ~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i- 297 (464)
-.|.+..++++.++.++..|+.+++.+.+.. .... .-.+..++.++..-+.-++..++..+..+-.-...+...
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m----~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~ 892 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETM----ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVP 892 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccc
Confidence 4667777888899999999999999887532 1111 124455566666666656665555544432110001000
Q ss_pred hccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
...-.+++|+.++.+....+|..|..+++.+..
T Consensus 893 ~~~Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 893 YNPLLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred cceeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 112256788888888888899999988887744
No 385
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.14 E-value=1.3e+03 Score=26.30 Aligned_cols=245 Identities=14% Similarity=0.051 Sum_probs=113.7
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCchhHHHHHh--cCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC-Cch
Q 012413 178 TVKICIDGLQSS-SVAIKRSAAAKLRLLAKNRSDNRVLIGE--SGAVPALVPLLKC-SDPWTQEHSVTALLNLSLH-ENN 252 (464)
Q Consensus 178 ~v~~Lv~~L~s~-~~~vr~~A~~~L~~La~~~~~~r~~i~~--~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~-~~~ 252 (464)
.-..++..|+.. |..|+..+++++.-...+-....+.+.. ......+.++++. ...+.+...+..|+.+... .+.
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 335556777765 6778888888888777775554444432 3444555566655 5566777777777776532 111
Q ss_pred HHHHHhcCcHHHHHHHHcc---CCHHHHHHHHHHHHHhcccccchhhhhccCChHHH---HHHhhcC-Ch---hhHHHHH
Q 012413 253 KTLITNAGAIKSLVYVLKT---GTETSKQNAACALMSLALIEENKSSIGACGAIPPL---VSLLIYG-SS---RGKKDAL 322 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~---~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L---i~lL~~~-~~---~v~~~A~ 322 (464)
.... .+.+-.++..|-+ +.+-+|.+.+.+|.++...-..+. ...-|.| +++--+. ++ ...+.+.
T Consensus 607 I~P~--~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS----~~~~~fL~pVIel~~D~~sP~hv~L~EDgm 680 (978)
T KOG1993|consen 607 IAPY--ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS----FEFYPFLYPVIELSTDPSSPEHVYLLEDGM 680 (978)
T ss_pred hhHH--HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC----ccchHHHHHHHHHhcCCCCCceeehhhhHH
Confidence 1000 1112222233322 345677777888888753311111 1122333 3333332 22 1233332
Q ss_pred HHHHHH--hcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCHhhHHHHHhcCcHHHHHHHHhcCCHH
Q 012413 323 TTLYKL--CSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA--GIAEGREAIVEENGIAALVEAIEDGSVK 398 (464)
Q Consensus 323 ~aL~nL--~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 398 (464)
. ||.. ...+..-..++. .+|-|+..+....+. ..-++.++..-. .+.. --.-...|..+.+.+++.+-..+
T Consensus 681 e-LW~~~L~n~~~l~p~ll~--L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~e 755 (978)
T KOG1993|consen 681 E-LWLTTLMNSQKLTPELLL--LFPHLLYIIEQSTEN-LPTVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNE 755 (978)
T ss_pred H-HHHHHHhcccccCHHHHH--HHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHH
Confidence 2 2221 112222233332 555565555433222 222222222211 1111 11112246677777777665555
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhh
Q 012413 399 GKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALS 434 (464)
Q Consensus 399 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 434 (464)
.....+.++..+...++ .-......++++.+..-+
T Consensus 756 gl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I 790 (978)
T KOG1993|consen 756 GLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSI 790 (978)
T ss_pred HHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHH
Confidence 55555555555554333 112223345555555544
Done!