Query 012413
Match_columns 464
No_of_seqs 281 out of 1748
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmz_A APC variant protein; pr 100.0 5.3E-35 1.8E-39 303.3 26.1 263 196-459 167-455 (458)
2 3nmw_A APC variant protein; AR 100.0 1.4E-34 4.9E-39 291.5 23.8 268 191-459 46-339 (354)
3 1xm9_A Plakophilin 1; armadill 100.0 4.1E-33 1.4E-37 290.8 30.1 322 98-459 2-454 (457)
4 3now_A UNC-45 protein, SD10334 100.0 2.9E-33 9.8E-38 306.1 29.1 352 97-456 329-739 (810)
5 3ul1_B Importin subunit alpha- 100.0 4.3E-33 1.5E-37 294.5 29.4 350 96-455 55-431 (510)
6 3tpo_A Importin subunit alpha- 100.0 2.4E-32 8E-37 290.0 31.1 348 97-454 75-449 (529)
7 3now_A UNC-45 protein, SD10334 100.0 2.8E-32 9.7E-37 298.3 29.8 345 96-457 419-785 (810)
8 1xm9_A Plakophilin 1; armadill 100.0 4.6E-33 1.6E-37 290.5 22.1 278 178-456 3-362 (457)
9 4b8j_A Importin subunit alpha- 100.0 4.8E-31 1.6E-35 279.1 34.2 350 96-455 72-444 (528)
10 3ul1_B Importin subunit alpha- 100.0 1.5E-31 5E-36 282.8 27.5 280 176-455 99-388 (510)
11 3l6x_A Catenin delta-1; cateni 100.0 2.1E-31 7.2E-36 282.6 28.3 323 92-455 42-477 (584)
12 3l6x_A Catenin delta-1; cateni 100.0 1.2E-31 4E-36 284.5 25.6 281 176-457 47-387 (584)
13 3tpo_A Importin subunit alpha- 100.0 5.1E-31 1.7E-35 279.8 29.6 280 176-455 118-407 (529)
14 1wa5_B Importin alpha subunit; 100.0 3.2E-30 1.1E-34 273.2 34.9 324 96-456 85-414 (530)
15 2jdq_A Importin alpha-1 subuni 100.0 1.9E-30 6.5E-35 267.4 31.9 345 100-455 22-391 (450)
16 3nmz_A APC variant protein; pr 100.0 6.8E-31 2.3E-35 272.5 23.3 266 189-454 94-408 (458)
17 4b8j_A Importin subunit alpha- 100.0 1.6E-29 5.3E-34 267.5 31.9 279 177-455 117-401 (528)
18 4hxt_A De novo protein OR329; 100.0 1.9E-29 6.5E-34 239.4 27.4 243 219-461 2-248 (252)
19 3nmw_A APC variant protein; AR 100.0 2.6E-30 8.8E-35 260.4 21.4 268 146-416 45-338 (354)
20 1wa5_B Importin alpha subunit; 100.0 5.5E-29 1.9E-33 263.6 32.3 279 177-455 173-458 (530)
21 2jdq_A Importin alpha-1 subuni 100.0 3.2E-28 1.1E-32 250.7 32.6 278 177-455 64-348 (450)
22 4hxt_A De novo protein OR329; 100.0 1.5E-28 5.1E-33 233.2 26.5 238 177-414 2-243 (252)
23 1jdh_A Beta-catenin; beta-cate 100.0 1.3E-28 4.3E-33 259.3 26.2 321 96-457 15-342 (529)
24 4db8_A Armadillo-repeat protei 100.0 9.3E-29 3.2E-33 235.8 22.7 238 218-455 11-252 (252)
25 2z6h_A Catenin beta-1, beta-ca 100.0 2.2E-28 7.4E-33 265.5 27.3 348 95-456 11-384 (644)
26 4db8_A Armadillo-repeat protei 100.0 1E-28 3.5E-33 235.6 21.9 236 177-412 12-251 (252)
27 1jdh_A Beta-catenin; beta-cate 100.0 5.5E-28 1.9E-32 254.4 28.1 318 97-455 58-386 (529)
28 2z6h_A Catenin beta-1, beta-ca 100.0 8.1E-28 2.8E-32 260.9 26.5 345 96-457 138-530 (644)
29 2z6g_A B-catenin; FULL-length, 100.0 3.3E-27 1.1E-31 261.5 27.2 345 96-457 274-666 (780)
30 2z6g_A B-catenin; FULL-length, 99.9 1.5E-26 5.3E-31 256.1 27.1 278 176-456 191-474 (780)
31 3opb_A SWI5-dependent HO expre 99.9 1.4E-25 4.8E-30 241.5 23.9 354 90-457 288-731 (778)
32 4db6_A Armadillo repeat protei 99.9 6.9E-25 2.3E-29 203.3 23.1 198 258-455 10-210 (210)
33 4db6_A Armadillo repeat protei 99.9 1.8E-24 6.3E-29 200.4 22.3 196 217-412 10-209 (210)
34 3tt9_A Plakophilin-2; cell adh 99.9 2.4E-24 8.2E-29 203.6 15.6 195 176-371 7-229 (233)
35 3tt9_A Plakophilin-2; cell adh 99.9 4.1E-24 1.4E-28 202.1 16.9 194 219-413 8-230 (233)
36 3opb_A SWI5-dependent HO expre 99.9 4.1E-23 1.4E-27 222.5 21.1 279 173-453 330-682 (778)
37 1xqr_A HSPBP1 protein; armadil 99.9 1.5E-22 5E-27 198.8 22.1 223 233-455 54-288 (296)
38 1xqr_A HSPBP1 protein; armadil 99.9 1.1E-21 3.6E-26 192.7 24.2 235 176-411 27-286 (296)
39 1oyz_A Hypothetical protein YI 99.7 5.5E-16 1.9E-20 149.9 22.9 255 96-451 21-279 (280)
40 3grl_A General vesicular trans 99.7 4.4E-16 1.5E-20 164.1 21.4 276 176-455 20-343 (651)
41 3grl_A General vesicular trans 99.7 3E-15 1E-19 157.7 25.5 338 92-456 15-396 (651)
42 1oyz_A Hypothetical protein YI 99.7 1.1E-15 3.7E-20 147.8 20.4 227 177-454 23-250 (280)
43 3ltm_A Alpha-REP4; protein eng 99.7 2.1E-15 7.2E-20 139.6 19.7 194 217-461 17-210 (211)
44 3ltm_A Alpha-REP4; protein eng 99.7 7.4E-15 2.5E-19 135.9 20.4 188 176-414 18-205 (211)
45 3ltj_A Alpharep-4; protein eng 99.6 1.4E-14 4.9E-19 132.9 21.2 185 176-411 13-197 (201)
46 3ltj_A Alpharep-4; protein eng 99.6 1.1E-14 3.8E-19 133.7 19.3 187 217-454 12-198 (201)
47 4fdd_A Transportin-1; heat rep 99.6 7.1E-15 2.4E-19 164.0 18.5 339 99-455 91-472 (852)
48 1b3u_A Protein (protein phosph 99.6 6.3E-14 2.2E-18 148.4 17.4 336 97-455 163-549 (588)
49 1b3u_A Protein (protein phosph 99.5 1.5E-13 5.3E-18 145.4 18.9 330 96-454 240-587 (588)
50 4fdd_A Transportin-1; heat rep 99.5 1.3E-13 4.5E-18 153.7 17.9 278 172-455 123-430 (852)
51 1ibr_B P95, importin beta-1 su 99.4 4.1E-12 1.4E-16 130.3 19.3 275 174-455 125-438 (462)
52 2vgl_B AP-2 complex subunit be 99.4 1.7E-11 5.7E-16 131.4 24.2 327 97-453 48-418 (591)
53 2vgl_B AP-2 complex subunit be 99.4 7.9E-12 2.7E-16 134.0 19.0 263 177-455 160-458 (591)
54 1w63_A Adapter-related protein 99.3 1.9E-10 6.6E-15 123.8 21.5 221 176-413 141-415 (618)
55 4gmo_A Putative uncharacterize 99.2 8.5E-11 2.9E-15 128.1 14.9 193 219-412 34-258 (684)
56 1qgr_A Protein (importin beta 99.2 7E-10 2.4E-14 123.0 19.8 276 173-455 124-438 (876)
57 2bpt_A Importin beta-1 subunit 99.2 2E-09 6.9E-14 119.1 23.5 276 174-455 131-441 (861)
58 1qgr_A Protein (importin beta 99.2 5.1E-10 1.7E-14 124.2 18.5 274 175-455 170-480 (876)
59 4gmo_A Putative uncharacterize 99.2 2.2E-10 7.5E-15 124.8 15.1 194 260-453 34-257 (684)
60 1w63_A Adapter-related protein 99.2 7.1E-10 2.4E-14 119.4 18.2 253 177-454 107-414 (618)
61 2bpt_A Importin beta-1 subunit 99.1 3.1E-10 1E-14 125.7 15.5 270 176-455 410-712 (861)
62 1ibr_B P95, importin beta-1 su 99.1 1.2E-09 4.2E-14 111.7 15.9 234 176-413 171-438 (462)
63 1u6g_C TIP120 protein, CAND1; 99.0 4.7E-09 1.6E-13 121.4 18.8 340 96-456 46-465 (1230)
64 2vgl_A Adaptor protein complex 98.9 1E-07 3.5E-12 102.6 23.9 256 176-454 145-433 (621)
65 1u6g_C TIP120 protein, CAND1; 98.9 2.6E-09 9E-14 123.5 11.9 271 177-457 6-287 (1230)
66 2vgl_A Adaptor protein complex 98.8 1.1E-07 3.9E-12 102.2 18.7 216 177-412 187-433 (621)
67 1te4_A Conserved protein MTH18 98.8 4E-10 1.4E-14 96.3 -0.9 120 176-327 11-130 (131)
68 1te4_A Conserved protein MTH18 98.8 1.2E-09 4E-14 93.4 1.1 122 299-452 10-131 (131)
69 2qk2_A LP04448P; mini spindles 98.8 5.4E-08 1.8E-12 91.7 12.7 181 182-371 20-205 (242)
70 4ady_A RPN2, 26S proteasome re 98.8 8.6E-07 2.9E-11 97.8 23.4 241 177-459 429-681 (963)
71 3b2a_A TON_1937, putative unch 98.7 7.1E-07 2.4E-11 82.3 18.8 220 176-406 32-255 (265)
72 1ho8_A Vacuolar ATP synthase s 98.7 4.7E-07 1.6E-11 92.5 18.5 268 185-455 133-477 (480)
73 2qk2_A LP04448P; mini spindles 98.7 1.7E-07 5.8E-12 88.3 14.0 182 263-454 18-205 (242)
74 2db0_A 253AA long hypothetical 98.7 3.9E-06 1.3E-10 74.5 21.3 212 176-412 31-246 (253)
75 4ady_A RPN2, 26S proteasome re 98.6 5.6E-06 1.9E-10 91.4 24.9 240 177-453 472-718 (963)
76 3b2a_A TON_1937, putative unch 98.6 5.5E-06 1.9E-10 76.4 19.6 189 96-332 31-220 (265)
77 2db0_A 253AA long hypothetical 98.6 9.1E-06 3.1E-10 72.2 19.8 219 217-460 30-252 (253)
78 2qk1_A Protein STU2; STU2P, XM 98.5 6.3E-07 2.1E-11 85.2 12.5 188 183-371 22-220 (249)
79 3tjz_B Coatomer subunit gamma; 98.4 6.7E-06 2.3E-10 81.9 16.8 250 177-458 68-320 (355)
80 2qk1_A Protein STU2; STU2P, XM 98.3 6E-06 2.1E-10 78.4 13.6 190 265-455 21-221 (249)
81 3tjz_B Coatomer subunit gamma; 98.3 9.2E-05 3.2E-09 73.6 21.6 209 219-455 68-280 (355)
82 1ho8_A Vacuolar ATP synthase s 98.0 8E-05 2.7E-09 76.1 14.9 231 181-413 171-477 (480)
83 3dad_A FH1/FH2 domain-containi 98.0 0.00019 6.5E-09 70.0 16.5 151 304-454 121-286 (339)
84 3dad_A FH1/FH2 domain-containi 97.9 0.00052 1.8E-08 67.0 18.1 181 264-444 122-326 (339)
85 2iw3_A Elongation factor 3A; a 97.8 0.002 6.8E-08 72.0 23.2 270 177-457 14-327 (986)
86 1lrv_A LRV, leucine-rich repea 97.8 3.6E-06 1.2E-10 79.6 1.0 179 184-450 57-242 (244)
87 2iw3_A Elongation factor 3A; a 97.7 0.0035 1.2E-07 69.9 22.8 221 177-411 95-323 (986)
88 1wa5_C Importin alpha RE-expor 97.4 0.00036 1.2E-08 78.6 10.3 254 192-455 376-671 (960)
89 4ffb_C Protein STU2; tubulin f 97.3 0.0052 1.8E-07 58.6 15.9 184 182-371 14-212 (278)
90 3oc3_A Helicase MOT1, MOT1; re 97.3 0.0011 3.6E-08 68.6 11.2 243 178-450 175-432 (800)
91 1lrv_A LRV, leucine-rich repea 97.2 0.00011 3.6E-09 69.4 2.1 70 304-408 173-242 (244)
92 4ffb_C Protein STU2; tubulin f 97.2 0.0021 7.1E-08 61.4 10.9 191 101-330 12-212 (278)
93 2fv2_A RCD1 required for cell 97.1 0.03 1E-06 52.4 17.5 226 179-410 5-266 (268)
94 2x1g_F Cadmus; transport prote 97.1 0.033 1.1E-06 62.5 21.6 247 192-454 436-722 (971)
95 1wa5_C Importin alpha RE-expor 97.1 0.022 7.5E-07 64.0 20.2 218 188-411 416-669 (960)
96 2of3_A ZYG-9; multifunctional 96.8 0.044 1.5E-06 52.0 16.1 173 183-370 52-235 (266)
97 2x19_B Importin-13; nuclear tr 96.8 0.13 4.3E-06 57.5 22.7 215 229-454 459-714 (963)
98 2x1g_F Cadmus; transport prote 96.7 0.065 2.2E-06 60.0 19.3 224 176-413 347-616 (971)
99 3ebb_A Phospholipase A2-activa 96.6 0.034 1.2E-06 53.9 14.6 137 314-450 161-302 (304)
100 1upk_A MO25 protein; transfera 96.5 0.052 1.8E-06 52.8 14.5 196 176-373 77-285 (341)
101 2fv2_A RCD1 required for cell 96.4 0.042 1.5E-06 51.3 12.9 146 194-340 73-234 (268)
102 2x19_B Importin-13; nuclear tr 96.2 0.11 3.7E-06 58.0 17.8 172 270-452 459-644 (963)
103 3oc3_A Helicase MOT1, MOT1; re 96.2 0.0085 2.9E-07 62.0 7.8 186 192-407 243-431 (800)
104 1upk_A MO25 protein; transfera 96.2 0.33 1.1E-05 47.3 18.5 241 213-455 72-333 (341)
105 3u0r_A Apoptosis inhibitor 5; 96.0 0.18 6.2E-06 51.3 16.2 128 182-328 34-161 (507)
106 2of3_A ZYG-9; multifunctional 95.9 0.059 2E-06 51.1 11.7 178 221-413 48-237 (266)
107 3l9t_A Putative uncharacterize 95.4 0.14 4.9E-06 47.3 11.7 144 177-340 71-218 (240)
108 3ibv_A Exportin-T; karyopherin 95.3 1.1 3.7E-05 50.4 20.8 247 189-452 20-304 (980)
109 3m1i_C Exportin-1; heat repeat 95.2 0.35 1.2E-05 54.8 16.7 231 177-413 344-619 (1049)
110 3ebb_A Phospholipase A2-activa 94.9 0.4 1.4E-05 46.3 13.9 116 225-340 153-273 (304)
111 4hat_C Exportin-1; heat repeat 94.8 0.18 6.2E-06 57.0 12.6 139 189-331 465-619 (1023)
112 1lsh_A Lipovitellin (LV-1N, LV 94.7 1.1 3.9E-05 50.6 19.0 204 174-414 353-578 (1056)
113 3l9t_A Putative uncharacterize 94.5 0.7 2.4E-05 42.7 13.7 142 221-381 73-218 (240)
114 3u0r_A Apoptosis inhibitor 5; 94.5 1.3 4.3E-05 45.2 16.6 122 231-370 40-162 (507)
115 2f31_A Diaphanous protein homo 93.9 0.68 2.3E-05 42.8 12.6 128 273-401 67-217 (233)
116 1lsh_A Lipovitellin (LV-1N, LV 93.8 1.6 5.5E-05 49.4 17.8 167 220-409 357-540 (1056)
117 3eg5_B Protein diaphanous homo 93.8 2.9 9.8E-05 41.6 17.7 144 213-358 104-281 (383)
118 2f31_A Diaphanous protein homo 93.6 3.8 0.00013 37.6 17.1 142 217-358 41-215 (233)
119 3m1i_C Exportin-1; heat repeat 93.5 1.2 3.9E-05 50.4 15.9 221 176-413 15-264 (1049)
120 3ibv_A Exportin-T; karyopherin 93.4 1.7 5.8E-05 48.8 17.0 264 187-454 203-524 (980)
121 3a6p_A Exportin-5; exportin-5, 93.1 1.3 4.6E-05 50.8 15.8 247 189-453 25-330 (1204)
122 3eg5_B Protein diaphanous homo 93.0 1.6 5.4E-05 43.5 14.4 140 259-399 108-281 (383)
123 3gjx_A Exportin-1; transport, 92.8 3.3 0.00011 46.9 18.2 221 176-413 27-276 (1073)
124 4hat_C Exportin-1; heat repeat 92.7 0.38 1.3E-05 54.4 10.2 140 272-414 465-620 (1023)
125 3c2g_A SYS-1 protein; beta-cat 91.0 5 0.00017 39.2 14.3 157 237-394 261-449 (619)
126 3c2g_A SYS-1 protein; beta-cat 90.9 5.2 0.00018 39.1 14.3 135 317-452 259-401 (619)
127 2bnx_A Diaphanous protein homo 90.8 10 0.00034 37.7 17.3 140 218-358 46-219 (386)
128 2bnx_A Diaphanous protein homo 89.2 3.5 0.00012 41.0 12.4 127 273-400 71-220 (386)
129 3qml_C Protein SLS1, nucleotid 85.4 9.1 0.00031 36.6 12.0 136 190-330 41-189 (315)
130 3a6p_A Exportin-5; exportin-5, 84.3 27 0.00093 39.9 17.8 255 187-454 57-380 (1204)
131 3gae_A Protein DOA1; UFD3, CDC 83.7 17 0.00057 33.8 13.1 102 186-290 99-218 (253)
132 1x5b_A Signal transducing adap 80.0 4.2 0.00014 35.2 7.0 73 175-247 50-124 (163)
133 3gs3_A Symplekin, LD45768P; he 79.8 39 0.0013 31.4 15.9 108 176-288 52-172 (257)
134 1mhq_A ADP-ribosylation factor 78.7 5.6 0.00019 33.8 7.2 72 176-247 37-115 (148)
135 3pst_A Protein DOA1; protein d 78.5 44 0.0015 33.4 14.6 194 58-289 177-389 (425)
136 3gae_A Protein DOA1; UFD3, CDC 76.1 4 0.00014 38.1 6.0 130 312-447 101-251 (253)
137 3qml_C Protein SLS1, nucleotid 75.9 20 0.00069 34.2 10.8 107 177-288 71-188 (315)
138 1juq_A ADP-ribosylation factor 75.0 5.8 0.0002 34.6 6.5 73 175-247 48-127 (171)
139 3ldz_A STAM-1, signal transduc 74.1 6 0.00021 33.2 6.1 73 175-247 40-113 (140)
140 1vdy_A Hypothetical protein (R 73.5 9.4 0.00032 32.1 7.1 78 383-463 49-139 (140)
141 3o2t_A Symplekin; heat repeat, 71.6 66 0.0023 31.7 13.8 65 177-246 63-127 (386)
142 3g2s_A C-terminal fragment of 66.7 15 0.00051 31.2 7.0 74 175-248 46-126 (149)
143 1x5b_A Signal transducing adap 66.0 14 0.00047 31.9 6.8 71 384-454 53-125 (163)
144 3pst_A Protein DOA1; protein d 65.3 56 0.0019 32.7 11.8 129 312-446 273-422 (425)
145 3ldz_A STAM-1, signal transduc 64.6 14 0.00047 31.0 6.4 71 384-454 43-114 (140)
146 3zyq_A Hepatocyte growth facto 64.5 10 0.00036 34.5 6.0 74 174-247 42-117 (226)
147 3gjx_A Exportin-1; transport, 63.3 15 0.00053 41.4 8.2 98 356-455 493-596 (1073)
148 3gs3_A Symplekin, LD45768P; he 61.2 1E+02 0.0035 28.4 23.1 96 183-287 21-117 (257)
149 3l3f_X Protein DOA1, DOA1/UFD3 60.7 1.3E+02 0.0044 29.4 15.7 194 58-289 114-326 (362)
150 1dvp_A HRS, hepatocyte growth 60.5 16 0.00055 33.0 6.5 74 174-247 39-114 (220)
151 1mhq_A ADP-ribosylation factor 59.4 20 0.00069 30.3 6.5 72 383-454 38-116 (148)
152 3l3f_X Protein DOA1, DOA1/UFD3 57.3 46 0.0016 32.6 9.4 102 312-416 210-330 (362)
153 3s4w_B Protein FACD2, fanconi 56.5 1.4E+02 0.0049 34.3 14.5 211 232-456 323-555 (1323)
154 1juq_A ADP-ribosylation factor 56.2 19 0.00066 31.2 6.0 71 384-454 51-128 (171)
155 1elk_A Target of MYB1; superhe 52.9 32 0.0011 29.3 6.8 73 175-247 51-129 (157)
156 1vsy_5 Proteasome activator BL 52.2 1.8E+02 0.0063 32.4 14.5 178 261-452 134-363 (997)
157 3g2s_A C-terminal fragment of 52.2 49 0.0017 27.9 7.7 70 343-412 49-126 (149)
158 3zyq_A Hepatocyte growth facto 49.0 31 0.0011 31.3 6.4 71 384-454 46-118 (226)
159 1dvp_A HRS, hepatocyte growth 41.9 46 0.0016 29.9 6.4 71 384-454 43-115 (220)
160 1elk_A Target of MYB1; superhe 32.8 90 0.0031 26.4 6.4 71 384-454 54-130 (157)
161 3o2t_A Symplekin; heat repeat, 32.6 3.6E+02 0.012 26.3 25.1 87 192-287 40-127 (386)
162 1vdy_A Hypothetical protein (R 31.5 2.2E+02 0.0076 23.6 9.6 69 176-247 48-129 (140)
163 1vsy_5 Proteasome activator BL 29.3 71 0.0024 35.7 6.4 184 219-413 133-366 (997)
164 3vld_A DNA mismatch repair pro 25.8 5.3E+02 0.018 26.1 13.0 112 254-370 110-224 (500)
165 4atg_A TAF6; transcription, TF 24.2 2.4E+02 0.0083 24.8 7.7 111 261-371 41-162 (196)
166 4atg_A TAF6; transcription, TF 24.0 1.6E+02 0.0056 25.9 6.6 128 302-436 41-179 (196)
No 1
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=303.34 Aligned_cols=263 Identities=23% Similarity=0.263 Sum_probs=240.1
Q ss_pred HHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCCc-hHHHHHh-cCcH
Q 012413 196 SAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----------SDPWTQEHSVTALLNLSLHEN-NKTLITN-AGAI 262 (464)
Q Consensus 196 ~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----------~~~~v~~~A~~aL~~La~~~~-~~~~i~~-~g~i 262 (464)
+|+++|.+++.+ +++|..+.+.|++++|+.+|.. .++.+++.|+++|.||+.+.+ ++..+.. .|+|
T Consensus 167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 999999999887 9999999999999999999952 347899999999999999764 6666655 5669
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhc-CcchHHHH
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCS-LKQNKERA 338 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~-~~~~~~~i 338 (464)
|.|+.+|++++++++..|+|+|.+|+.. +++|..+++.|+||+|+++| .+.+..+++.|+.+|+||+. .++++..+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999985 57899999999999999975 55688999999999999999 77889888
Q ss_pred H-HcCCHHHHHHhhcCCCH----HHHHHHHHHHHHHh----CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 339 V-SAGAVRPLVGMLAGQGE----GMAEKAMVVLSLLA----GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 339 v-~~g~v~~Lv~lL~~~~~----~v~~~A~~aL~nLa----~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
+ ..|+++.|+.+|.+... .+++.|+++|.||+ ..+++++.+++.|+++.|+++|++++..++..|+++|+|
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 8 69999999999987654 48999999999999 489999999999999999999999999999999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
|+..+++++..+.+.|++++|+++++++++.+++.|+|+|++|..+++..
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 99888999999999999999999999999999999999999999887653
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.4e-34 Score=291.49 Aligned_cols=268 Identities=22% Similarity=0.251 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCC-chHHHHHh
Q 012413 191 VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----------SDPWTQEHSVTALLNLSLHE-NNKTLITN 258 (464)
Q Consensus 191 ~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----------~~~~v~~~A~~aL~~La~~~-~~~~~i~~ 258 (464)
...+..|+++|.+++.+ +++|..+.+.|++++|+.+|.. .++.+++.|+++|.||+.+. +++..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35567899999999998 8999999999999999999952 34789999999999999875 47777765
Q ss_pred -cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHh-hcCChhhHHHHHHHHHHHhc-Ccc
Q 012413 259 -AGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLL-IYGSSRGKKDALTTLYKLCS-LKQ 333 (464)
Q Consensus 259 -~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~-~~~ 333 (464)
.|+||.|+.+|++++++++..|+|+|.||+.. +++|..+++.|+||+|+++| .+.+..+++.|+.+|+||+. .++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 55699999999999999999999999999985 57899999999999999975 55788999999999999999 668
Q ss_pred hHHHHH-HcCCHHHHHHhhcCCCH----HHHHHHHHHHHHHhC----CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHH
Q 012413 334 NKERAV-SAGAVRPLVGMLAGQGE----GMAEKAMVVLSLLAG----IAEGREAIVEENGIAALVEAIEDGSVKGKEFAV 404 (464)
Q Consensus 334 ~~~~iv-~~g~v~~Lv~lL~~~~~----~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 404 (464)
++..++ ..|+++.|+.+|.+.+. .+++.|+++|.||+. .+++++.+.+.|+++.|+++|++++..++..|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 888888 69999999999987654 589999999999994 899999999999999999999999999999999
Q ss_pred HHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 405 LTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 405 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
++|+||+..+++++..+.+.|++++|+++++++++.+++.|+|+|.+|...++..
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999888999999999999999999999999999999999999999876653
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.1e-33 Score=290.81 Aligned_cols=322 Identities=14% Similarity=0.097 Sum_probs=276.0
Q ss_pred hHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCch
Q 012413 98 DDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQ 176 (464)
Q Consensus 98 ~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~ 176 (464)
..+++|.++|.+ ++.++.+++.+|+.++...+.... .+.+ .
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~-------------------------------~i~~-------~ 43 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ-------------------------------QVYQ-------L 43 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHH-------------------------------HHHH-------T
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH-------------------------------HHHH-------c
Confidence 467889999988 888999999999998643333221 1111 3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+.|+.|+++|+++++.++..|+++|++++.++++++..+++.|+||+|+.+|+ +.++++++.|+++|.||+.+++++..
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~ 123 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHH
Confidence 67888999999999999999999999999998999999999999999999999 78999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHc--------c--------CCHHHHHHHHHHHHHhcccccchhhhhcc-CChHHHHHHhhc------
Q 012413 256 ITNAGAIKSLVYVLK--------T--------GTETSKQNAACALMSLALIEENKSSIGAC-GAIPPLVSLLIY------ 312 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~--------~--------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~-g~i~~Li~lL~~------ 312 (464)
+++ |++|.|+.+|. + .+..++..|+|+|.||+.+++++..+.+. |++++|+.+|.+
T Consensus 124 i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 202 (457)
T 1xm9_A 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASR 202 (457)
T ss_dssp HHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTC
T ss_pred HHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccC
Confidence 999 99999999993 2 24667779999999999998899999997 999999988864
Q ss_pred C-------------------------------------------------------------------------------
Q 012413 313 G------------------------------------------------------------------------------- 313 (464)
Q Consensus 313 ~------------------------------------------------------------------------------- 313 (464)
.
T Consensus 203 ~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (457)
T 1xm9_A 203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282 (457)
T ss_dssp TTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSH
T ss_pred CchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCc
Confidence 1
Q ss_pred --------------ChhhHHHHHHHHHHHhcCcch-H----HHHH-HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 314 --------------SSRGKKDALTTLYKLCSLKQN-K----ERAV-SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 314 --------------~~~v~~~A~~aL~nL~~~~~~-~----~~iv-~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
++.+++.|+++|+||+..... . +.++ +.|++|.|+.+|.+++.+++..|+++|.||+.++
T Consensus 283 ~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 234556688999999885422 1 2334 6899999999999999999999999999999988
Q ss_pred hhHHHHHhcCcHHHHHHHHhcCC------HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHH
Q 012413 374 EGREAIVEENGIAALVEAIEDGS------VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-SVRAKHKAE 446 (464)
Q Consensus 374 ~~~~~i~~~g~i~~Lv~lL~~~~------~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~ 446 (464)
+++..|. .|++++|+++|...+ +++...++++|+++...++.+...+.+.|++++|+.++.++ ++++++.|.
T Consensus 363 ~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 363 LLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp GGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 8776665 589999999999763 46888999999999988888999999999999999999999 999999999
Q ss_pred HHHHHhhcCCCCC
Q 012413 447 TLLGYLREPRQEG 459 (464)
Q Consensus 447 ~aL~~L~~~~~~~ 459 (464)
|+|.++..+..-+
T Consensus 442 ~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 442 LLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHTTSSSTTCS
T ss_pred HHHHHHHcchhhh
Confidence 9999999876644
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.9e-33 Score=306.13 Aligned_cols=352 Identities=16% Similarity=0.150 Sum_probs=286.9
Q ss_pred hhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchh--hhhcCcccCcccccCCCchhhhhhhccc--C----------
Q 012413 97 EDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPEN--ILRQPNENNCQAELEPEPEPCLGFLQRE--N---------- 161 (464)
Q Consensus 97 e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~--~~~~~~~~~~~e~~~p~l~~lv~~L~~~--~---------- 161 (464)
+.-+++|..++.. .+.+|..+.-+|-+++....... .....+ ...+..+.++.+|... +
T Consensus 329 ~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g------~i~~Lv~~l~~lL~~~~~d~~v~~~Avea 402 (810)
T 3now_A 329 EQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG------AALKLAEACRRFLIKPGKDKDIRRWAADG 402 (810)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT------HHHHHHHHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhc------cHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3445888888876 66778888888888865322111 111001 0222233445665544 1
Q ss_pred -----chhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch--------------------------
Q 012413 162 -----FSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-------------------------- 210 (464)
Q Consensus 162 -----~s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-------------------------- 210 (464)
...++.+.+... .+.++.|+.+|+++++.++..|+++|.|++.+.+.
T Consensus 403 LayLS~~~~vk~~lv~d--~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 403 LAYLTLDAECKEKLIED--KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHTTSHHHHHHHHHC--HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred HHHHhCCcHHHHHHHHc--cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 122333333322 57999999999999999999999999999986431
Q ss_pred ---hH---HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHH
Q 012413 211 ---NR---VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACAL 284 (464)
Q Consensus 211 ---~r---~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 284 (464)
.+ +.+++.|++|.|+.+|+++++.+++.|+|+|+||+.+++++..+++.|++|+|+.+|++++...+..|+|+|
T Consensus 481 ~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL 560 (810)
T 3now_A 481 VDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQAL 560 (810)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHH
Confidence 22 677899999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHhcccccchhhhh---ccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHH
Q 012413 285 MSLALIEENKSSIG---ACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMA 359 (464)
Q Consensus 285 ~~Ls~~~~~~~~i~---~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~ 359 (464)
.+|+.+.+....+. ..|++|+|+.+|.++ +...+..|+++|.||+.. ++++..++++|+++.|+.+|.+.+..++
T Consensus 561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq 640 (810)
T 3now_A 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640 (810)
T ss_dssp HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHH
T ss_pred HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHH
Confidence 99987643322221 246999999999866 334557899999999996 5789999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHhhHHHHHh-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHH-cCChHHHHHhhhcC
Q 012413 360 EKAMVVLSLLAGIAEGREAIVE-ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVR-EGGIPPLVALSQTG 437 (464)
Q Consensus 360 ~~A~~aL~nLa~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~s~ 437 (464)
..|+++|+||+..++.+..+++ .|+++.|+.++.+++..+|..|+|+|++|+.+++.....+.+ .|++++|+.++.++
T Consensus 641 ~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 9999999999999888888886 789999999999999999999999999999988888888888 89999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 012413 438 SVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~~~~ 456 (464)
+.++++.|+|+|.++....
T Consensus 721 d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 721 SPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp SHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998743
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.3e-33 Score=294.49 Aligned_cols=350 Identities=18% Similarity=0.187 Sum_probs=298.5
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCC--CchhhhhcCcccCcccccCCCchhhhhhhcccCch------hhH
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLP--SPENILRQPNENNCQAELEPEPEPCLGFLQRENFS------TEI 166 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~--~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s------~~i 166 (464)
-.+.+++|.+.+.+ ++..+..+..+++++.+.. .++..++++| .+|.| |.+|+..+.. ..+
T Consensus 55 ~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G-------~ip~L---V~lL~~~~~~~lq~~Aa~a 124 (510)
T 3ul1_B 55 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG-------LIPKF---VSFLGKTDCSPIQFESAWA 124 (510)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTT-------HHHHH---HHHTTCTTCHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-------CHHHH---HHHHCCCCCHHHHHHHHHH
Confidence 35568888888876 8888999999999997653 3567777777 66666 8888654421 111
Q ss_pred hhhcCCCCc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCC-----H
Q 012413 167 IESISPEDL--------QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSD-----P 233 (464)
Q Consensus 167 ~~~~~~~~~--------~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~-----~ 233 (464)
+..+..+.- .++|+.|+.+|+++++++++.|+++|++++.+++.+|..+.+.|++++|+.+|.+.+ .
T Consensus 125 L~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred HHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence 222211110 258999999999999999999999999999999999999999999999999998754 4
Q ss_pred HHHHHHHHHHHHhcCCCchH-HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhh
Q 012413 234 WTQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLI 311 (464)
Q Consensus 234 ~v~~~A~~aL~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~ 311 (464)
.+++.++++|.+++.+.... ......|++|.|+.+|.+++++++..|+|+|.+|+.+. +....+.+.|+++.|+++|.
T Consensus 205 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 67889999999999875433 33445789999999999999999999999999999885 45667788999999999999
Q ss_pred cCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHH
Q 012413 312 YGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALV 389 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv 389 (464)
+++..++..++++|+|++.. +..+..+++.|+++.|+.+|.+++..++..|+++|+||+ ..+..+..+.+.|+++.|+
T Consensus 285 ~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv 364 (510)
T 3ul1_B 285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHH
Confidence 99999999999999999884 567788899999999999999999999999999999999 5677888999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 390 EAIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 390 ~lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.++.+.+.+++..|+++|+|++.. +.++...+.+.|++++|+.+|.+.+++++..+.++|.+|.+.
T Consensus 365 ~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999975 567778899999999999999999999999999999998753
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.4e-32 Score=290.05 Aligned_cols=348 Identities=18% Similarity=0.187 Sum_probs=295.1
Q ss_pred hhHHHHHHhhhhh-cccchhhhHHHHHHhhcCC--CchhhhhcCcccCcccccCCCchhhhhhhcccCchh------hHh
Q 012413 97 EDDYLNVSQAFSD-FSVCSSDISGELQRLASLP--SPENILRQPNENNCQAELEPEPEPCLGFLQRENFST------EII 167 (464)
Q Consensus 97 e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~--~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~------~i~ 167 (464)
.+.++.+.+.+.. ++..+..+.+.+.++.+.. .++..++..| .+|.+ |.+|...++.+ .++
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G-------~ip~L---v~lL~~~~~~~~q~~Aa~aL 144 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG-------LIPKF---VSFLGKTDCSPIQFESAWAL 144 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTT-------HHHHH---HHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCC-------CHHHH---HHHHcCCCCHHHHHHHHHHH
Confidence 3456777776665 7888889999999987543 3456677666 66666 77776544211 111
Q ss_pred hhcCCCCc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCC-----HH
Q 012413 168 ESISPEDL--------QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSD-----PW 234 (464)
Q Consensus 168 ~~~~~~~~--------~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~-----~~ 234 (464)
..+..+.- .++|+.|+.+|.++++++++.|+++|++++.+++.+|..+.+.|++++|+.+|...+ ..
T Consensus 145 ~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~ 224 (529)
T 3tpo_A 145 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 224 (529)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH
Confidence 21211110 258899999999999999999999999999999999999999999999999998744 46
Q ss_pred HHHHHHHHHHHhcCCCchH-HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhc
Q 012413 235 TQEHSVTALLNLSLHENNK-TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIY 312 (464)
Q Consensus 235 v~~~A~~aL~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~ 312 (464)
+.+.++++|.+++.+.... ......|++|.|+.+|.+++++++..++|+|.+++.+. +....+.+.|+++.|+.+|.+
T Consensus 225 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~ 304 (529)
T 3tpo_A 225 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 304 (529)
T ss_dssp HHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC
Confidence 7889999999999875433 34445789999999999999999999999999999885 556677889999999999999
Q ss_pred CChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHH
Q 012413 313 GSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVE 390 (464)
Q Consensus 313 ~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~ 390 (464)
++..++..++.+|+||+.. +.....+++.|+++.|+.+|.+++..++..|+++|+||+ ..+..+..+.+.|+++.|+.
T Consensus 305 ~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999884 567788899999999999999999999999999999999 56778888999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 391 AIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 391 lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
++.+++.+++..|+|+|+|++.. ++++...+++.|++++|+++|.+.+++++..+.++|.+|.+
T Consensus 385 lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975 56777889999999999999999999999999999999875
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-32 Score=298.29 Aligned_cols=345 Identities=15% Similarity=0.104 Sum_probs=288.8
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhc-------ccCchhhHh
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQ-------RENFSTEII 167 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~-------~~~~s~~i~ 167 (464)
+...+++|.+++.+ ++.++..+..+|+.+++..+... ..|.+..+-.+.. ..+..+.+.
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~-------------~~~~l~~la~~s~~~v~~~~~ld~~~~v~ 485 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE-------------MLPEMIELAKFAKQHIPEEHELDDVDFIN 485 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC-------------CCCSCGGGTTTTCCSCCCSSCHHHHHHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh-------------hhHHHHHHHHHhhccCccccccccHHHHH
Confidence 56788999999987 88889999999999987543210 1111211111100 000111121
Q ss_pred ---hhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 168 ---ESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALL 244 (464)
Q Consensus 168 ---~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~ 244 (464)
..+.. .++|+.|+.+|+++++.+|+.|+++|.+++.+ +++|..+++.|++|+|+.+|++.++..++.|+++|.
T Consensus 486 ~r~~~Vve---aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~ 561 (810)
T 3now_A 486 KRITVLAN---EGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALA 561 (810)
T ss_dssp HHHHHHHH---TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHH
Confidence 22222 26899999999999999999999999999976 779999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHH---hcCcHHHHHHHHccC-CHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHH
Q 012413 245 NLSLHENNKTLIT---NAGAIKSLVYVLKTG-TETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKK 319 (464)
Q Consensus 245 ~La~~~~~~~~i~---~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~ 319 (464)
+|+.+.+....+. ..|++|+|+.+|..+ +...+..|+++|.||+.+ ++++..+++.|+++.|+.+|.++++.+++
T Consensus 562 nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~ 641 (810)
T 3now_A 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTR 641 (810)
T ss_dssp HHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHH
T ss_pred HHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHH
Confidence 9987544433221 246999999999876 445567999999999998 47888999999999999999999999999
Q ss_pred HHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHh-cCcHHHHHHHHhcCC
Q 012413 320 DALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVE-ENGIAALVEAIEDGS 396 (464)
Q Consensus 320 ~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~-~g~i~~Lv~lL~~~~ 396 (464)
.|+++|+||+.+++.+..+++ .|+++.|+.++.+.+..++..|+++|+||+. ++...+.+++ .|+++.|++++.+++
T Consensus 642 ~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS 721 (810)
T ss_dssp HHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC
Confidence 999999999999999988886 7899999999999999999999999999996 7888899998 899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC---CHHHHHHHHHHHHHhhcCCC
Q 012413 397 VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG---SVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 397 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~---~~~v~~~A~~aL~~L~~~~~ 457 (464)
.+++..|+|+|+||+..+++....+.+.|++++|+++++.. ++++.+.|..+|.++.+++-
T Consensus 722 ~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 722 PAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998888899999999999999999765 68999999999999987543
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.6e-33 Score=290.46 Aligned_cols=278 Identities=20% Similarity=0.215 Sum_probs=243.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLI 256 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i 256 (464)
.++.++..|++++++++..|+++|++++.+++..+..+.+.|+||.|+.+|+++++.++..|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 467789999999999999999999999998888888999999999999999999999999999999999986 8999999
Q ss_pred HhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh--------cC--------ChhhHH
Q 012413 257 TNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI--------YG--------SSRGKK 319 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~--------~~--------~~~v~~ 319 (464)
++.|+||.|+++|+ +++++++..++|+|+||+.++++|..+++ |++|+|+++|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999889999999 99999999993 22 456777
Q ss_pred HHHHHHHHHhcCcchHHHHHHc-CCHHHHHHhhcC------CCHHHHHHHHHHHHHHhCCH-------------------
Q 012413 320 DALTTLYKLCSLKQNKERAVSA-GAVRPLVGMLAG------QGEGMAEKAMVVLSLLAGIA------------------- 373 (464)
Q Consensus 320 ~A~~aL~nL~~~~~~~~~iv~~-g~v~~Lv~lL~~------~~~~v~~~A~~aL~nLa~~~------------------- 373 (464)
.|+++|+||+.+++++..+++. |+++.|+.+|.+ .+..+.++++++|.||+...
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998899999997 999999999985 45567889999999997321
Q ss_pred --------------------------------hhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCHH----
Q 012413 374 --------------------------------EGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLLQLCAESVK---- 416 (464)
Q Consensus 374 --------------------------------~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~---- 416 (464)
.+.+.+.+.|+++.|+.+|.+ .++.+++.|+|+|+||+..+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 122334556789999999985 4699999999999999976422
Q ss_pred h-HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 417 N-RGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 417 ~-~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
. +..+.+.|+++.|+++|.++++++++.|+|+|++++.+.
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 2 344557899999999999999999999999999998754
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.8e-31 Score=279.09 Aligned_cols=350 Identities=19% Similarity=0.203 Sum_probs=297.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCC--chhhhhcCcccCcccccCCCchhhhhhhcccCc------hhhH
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPS--PENILRQPNENNCQAELEPEPEPCLGFLQRENF------STEI 166 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~--~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~------s~~i 166 (464)
.++.++.|.+.|.+ ++.++..+..+|.++++... ....+...+ .+|.+ +.+|...+. ...+
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g-------~v~~L---v~lL~~~~~~~v~~~A~~~ 141 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSG-------VVPRF---VQFLTREDFPQLQFEAAWA 141 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTT-------CHHHH---HHHHTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-------CHHHH---HHHhCCCCCHHHHHHHHHH
Confidence 56779999999987 88899999999999977643 444555444 55555 777765441 0111
Q ss_pred hhhcCCCCc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh-cCCCHHHHH
Q 012413 167 IESISPEDL--------QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL-KCSDPWTQE 237 (464)
Q Consensus 167 ~~~~~~~~~--------~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL-~~~~~~v~~ 237 (464)
+..+..+.. .+.++.|+..|.++++.++..|+++|++++.+++.++..+.+.|+++.|+.+| .+.++.++.
T Consensus 142 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~ 221 (528)
T 4b8j_A 142 LTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHH
T ss_pred HHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHH
Confidence 122221110 15889999999999999999999999999999899999999999999999999 668999999
Q ss_pred HHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc-hhhhhccCChHHHHHHhhcCChh
Q 012413 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN-KSSIGACGAIPPLVSLLIYGSSR 316 (464)
Q Consensus 238 ~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~-~~~i~~~g~i~~Li~lL~~~~~~ 316 (464)
.|+++|.+|+.+..........|++|.|+.+|.++++.++..++++|.+|+..... ...+.+.|+++.|+.+|.++++.
T Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~ 301 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301 (528)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChh
Confidence 99999999998754444555689999999999999999999999999999987544 46778899999999999999999
Q ss_pred hHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHh
Q 012413 317 GKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQ-GEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIE 393 (464)
Q Consensus 317 v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~-~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~ 393 (464)
++..|+++|++|+. .+.....+++.|+++.|+.+|.++ +..++..|+++|+||+ ..+.....+++.|+++.|+++|.
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 99999999999999 456777888999999999999988 8999999999999999 46777888999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 394 DGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 394 ~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+.+..++..|+++|++|+.. ++.....+.+.|++++|+.+|.++++.++..|.++|.+|.+.
T Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 678888899999999999999999999999999999999764
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.5e-31 Score=282.77 Aligned_cols=280 Identities=19% Similarity=0.214 Sum_probs=254.8
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
.++|+.|+++|++ +++.+|..|+++|.+++.++++.+..+++.|+||.|+.+|+++++++++.|+++|+||+.+ ++.+
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999975 5689999999999999999999999999999999999999999999999999999999986 6788
Q ss_pred HHHHhcCcHHHHHHHHccCC-----HHHHHHHHHHHHHhcccccchhh-hhccCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 254 TLITNAGAIKSLVYVLKTGT-----ETSKQNAACALMSLALIEENKSS-IGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~aL~~Ls~~~~~~~~-i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
..+.+.|++++|+.+|...+ ..++..++|+|.+++.+...... ....|++|.|+.+|.+++..++..|+++|++
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999998754 46788999999999987644333 3347889999999999999999999999999
Q ss_pred HhcCcc-hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHH
Q 012413 328 LCSLKQ-NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVL 405 (464)
Q Consensus 328 L~~~~~-~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 405 (464)
|+..+. ....+++.|+++.|+.+|.+.+..++..++.+|+||+ ..+..+..+++.|+++.|+.++.++++.++..|+|
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~ 338 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHH
Confidence 999664 5566778999999999999999999999999999998 56778889999999999999999999999999999
Q ss_pred HHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 406 TLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 406 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+|+||+..++..+..+.+.|+++.|+.++.+++.++|..|+|+|.+++..
T Consensus 339 aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999864
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.1e-31 Score=282.59 Aligned_cols=323 Identities=21% Similarity=0.235 Sum_probs=270.0
Q ss_pred cCCcchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCC-chhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhh
Q 012413 92 KSTISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPS-PENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIES 169 (464)
Q Consensus 92 ~~~~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~-~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~ 169 (464)
.....+..+++|.++|.+ ++.++.+++.+|..++.... ....+. +
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~--------------------------------~- 88 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVR--------------------------------K- 88 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------------H-
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH--------------------------------H-
Confidence 556788899999999998 88899999999998864221 211111 1
Q ss_pred cCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 012413 170 ISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKN-RSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 170 ~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~-~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La 247 (464)
.+.|+.||.+|+++++++++.|+++|++|+.+ +++++..|.+.|+||+|+.+|++ .+.++++.|+++|.+|+
T Consensus 89 ------~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS 162 (584)
T 3l6x_A 89 ------LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLS 162 (584)
T ss_dssp ------TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHT
T ss_pred ------cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999999985 68999999999999999999997 68899999999999999
Q ss_pred CCCchHHHHHhcCcHHHHHHHHc------------------cCCHHHHHHHHHHHHHhcccc-cchhhhhcc-CChHHHH
Q 012413 248 LHENNKTLITNAGAIKSLVYVLK------------------TGTETSKQNAACALMSLALIE-ENKSSIGAC-GAIPPLV 307 (464)
Q Consensus 248 ~~~~~~~~i~~~g~i~~Lv~lL~------------------~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~-g~i~~Li 307 (464)
.+++++..|++ +++|.|+.+|. ..++.++.+|+++|.||+.+. ++|..+++. |+++.|+
T Consensus 163 ~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV 241 (584)
T 3l6x_A 163 SHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241 (584)
T ss_dssp TSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHH
T ss_pred CCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHH
Confidence 99999999996 57999999872 236799999999999999875 457777764 3345666
Q ss_pred HHhhc--------------------------------------------------------------------------C
Q 012413 308 SLLIY--------------------------------------------------------------------------G 313 (464)
Q Consensus 308 ~lL~~--------------------------------------------------------------------------~ 313 (464)
.+|.+ .
T Consensus 242 ~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~ 321 (584)
T 3l6x_A 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK 321 (584)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC
T ss_pred HHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC
Confidence 55432 2
Q ss_pred ChhhHHHHHHHHHHHhcCc-----chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHH
Q 012413 314 SSRGKKDALTTLYKLCSLK-----QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAAL 388 (464)
Q Consensus 314 ~~~v~~~A~~aL~nL~~~~-----~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L 388 (464)
++.++++|+++|+|||... .++..+.++|++|.|+.+|.+.+..++..|+++|+||+..+.++..| ..|+++.|
T Consensus 322 ~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~L 400 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNL 400 (584)
T ss_dssp CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHH
Confidence 3455667778888887643 22334445789999999999999999999999999999888887766 78999999
Q ss_pred HHHHhcC--------CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcC
Q 012413 389 VEAIEDG--------SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGYLREP 455 (464)
Q Consensus 389 v~lL~~~--------~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~~L~~~ 455 (464)
+++|.++ +..+...|+++|+||+..++.++..+.+.|+|++|+.+++++ .+.+++.|+++|.++..+
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 9999976 468899999999999999999999999999999999999986 889999999999999865
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.2e-31 Score=284.52 Aligned_cols=281 Identities=20% Similarity=0.204 Sum_probs=243.6
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CchH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH--ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~--~~~~ 253 (464)
.+.|+.||.+|.+++++++..|+++|.+++.+++.++..+.+.|+||+|+.+|+++++++++.|+++|.||+.+ ++++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 46788899999999999999999999999998899999999999999999999999999999999999999984 7999
Q ss_pred HHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhh------------------cCC
Q 012413 254 TLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLI------------------YGS 314 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~------------------~~~ 314 (464)
..|++.|+||.|+.+|++ .+.+++.+++++|++|+.++++|..|++ +++|+|++++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999997 5889999999999999999999999995 57999999872 125
Q ss_pred hhhHHHHHHHHHHHhcCc-chHHHHHHc-CCHHHHHHhhcC------CCHHHHHHHHHHHHHHhCCHh------------
Q 012413 315 SRGKKDALTTLYKLCSLK-QNKERAVSA-GAVRPLVGMLAG------QGEGMAEKAMVVLSLLAGIAE------------ 374 (464)
Q Consensus 315 ~~v~~~A~~aL~nL~~~~-~~~~~iv~~-g~v~~Lv~lL~~------~~~~v~~~A~~aL~nLa~~~~------------ 374 (464)
..++++|+++|.||+.+. +++..+++. |+++.|+.+|++ .+...+++|+++|.||+..-.
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 789999999999999965 568889884 556899999974 456789999999999995421
Q ss_pred --------------hHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcC----HHhHHHHHHcCChHHHHHhhh
Q 012413 375 --------------GREAIVEENGIAALVEAIE-DGSVKGKEFAVLTLLQLCAES----VKNRGLLVREGGIPPLVALSQ 435 (464)
Q Consensus 375 --------------~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~----~~~~~~i~~~g~i~~Lv~lL~ 435 (464)
+.+.+...++++.|+.+|+ +.++.+++.|+++|+|||... ...+..+.++|+++.|+++|.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 1112223356778899997 468999999999999998754 234556777899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCC
Q 012413 436 TGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 436 s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
++++.+++.|+|+|++|+.+..
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHhCChh
Confidence 9999999999999999998653
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5.1e-31 Score=279.76 Aligned_cols=280 Identities=19% Similarity=0.209 Sum_probs=255.9
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
.+.|+.|+.+|+. .++.++..|+++|.+++.+++.....+++.|+||.|+.+|.++++++++.|+++|+||+.+ ++.+
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 3688999999974 5699999999999999999999999999999999999999999999999999999999985 6889
Q ss_pred HHHHhcCcHHHHHHHHccCC-----HHHHHHHHHHHHHhcccccchh-hhhccCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 254 TLITNAGAIKSLVYVLKTGT-----ETSKQNAACALMSLALIEENKS-SIGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~aL~~Ls~~~~~~~-~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
..+.+.|++++|+.+|..++ ..++..++|+|.+++.+..... .....|++|.|+.+|.++++.++..|+++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999998654 4678899999999998854433 33447889999999999999999999999999
Q ss_pred HhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHH
Q 012413 328 LCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVL 405 (464)
Q Consensus 328 L~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 405 (464)
|+.++ +....+++.|+++.|+.+|.+++..++..++.+|+||+ ..+..+..+++.|+++.|+.++.++++.++..|+|
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 99966 45566778999999999999999999999999999998 56778889999999999999999999999999999
Q ss_pred HHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 406 TLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 406 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+|+||+..++..+..+.+.|++++|+.++.+++.+++..|+|+|.+++..
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999854
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.2e-30 Score=273.17 Aligned_cols=324 Identities=15% Similarity=0.163 Sum_probs=284.7
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
-.+.+++|.+.|.+ ++.+|..+...|+++++.... |.+ ..+..
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~-----------------~~~-------------~~~~~------ 128 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHR-----------------PPI-------------DVVIQ------ 128 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSS-----------------CSH-------------HHHHH------
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCC-----------------ccH-------------HHHHH------
Confidence 33558889998887 888899999999998543211 000 01111
Q ss_pred chHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cch
Q 012413 175 LQPTVKICIDGLQSS-SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENN 252 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~-~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~ 252 (464)
.+.++.|+..|.++ ++.++..|+++|.+++.+++..+..+.+.|+++.|+.+|+++++.++..|+++|++|+.+ ++.
T Consensus 129 -~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 129 -AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp -TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred -CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 25677889999987 899999999999999999888889999999999999999999999999999999999986 578
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~ 331 (464)
+..+...|+++.|+.+|.+.+..++..++|+|.+|+.+. .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888899999999999999999999999999999999875 4555566689999999999999999999999999999985
Q ss_pred -cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 332 -KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 332 -~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
++....+++.|+++.|+.+|.+.+..++..|+++|++|+ ..+.....+++.|+++.|+.+|.+++..++..|+++|++
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467788889999999999999999999999999999999 557778888899999999999999999999999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
|+..++.....+.+.|+++.|+.+|.++++.++..|+|+|.+++...
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 99988888888889999999999999999999999999999998753
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.98 E-value=1.9e-30 Score=267.43 Aligned_cols=345 Identities=17% Similarity=0.184 Sum_probs=289.5
Q ss_pred HHHHHhhhhh-cccchhhhHHHHHHhhcC--CCchhhhhcC-cccCcccccCCCchhhhhhhccc-Cc-----hhhHhhh
Q 012413 100 YLNVSQAFSD-FSVCSSDISGELQRLASL--PSPENILRQP-NENNCQAELEPEPEPCLGFLQRE-NF-----STEIIES 169 (464)
Q Consensus 100 ~~~L~~ll~~-~~~~r~~a~~~l~~la~~--~~~~~~~~~~-~~~~~~e~~~p~l~~lv~~L~~~-~~-----s~~i~~~ 169 (464)
++.|.+.+.+ ++.+|..+...|+++++. ..+....... + .+|.+ +..|+.. +. ...++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~-------~i~~L---~~~L~~~~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG-------VVARF---VEFLKRKENCTLQFESAWVLTN 91 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTT-------HHHHH---HHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC-------cHHHH---HHHHCCCCCHHHHHHHHHHHHH
Confidence 7888998887 888999999999998652 2233333322 2 34444 6777655 21 1112221
Q ss_pred cCCCC--------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHH
Q 012413 170 ISPED--------LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSV 240 (464)
Q Consensus 170 ~~~~~--------~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~ 240 (464)
+.... ..+.++.|+..|+++++.+|..|+++|.+++.+.+..+..+.+.|+++.|+.+|++ .++.++..|+
T Consensus 92 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 92 IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 21111 03588999999999999999999999999999988899999999999999999996 7899999999
Q ss_pred HHHHHhcCCC--chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhh
Q 012413 241 TALLNLSLHE--NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRG 317 (464)
Q Consensus 241 ~aL~~La~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v 317 (464)
++|++++.+. ..+..+. .+++|.|+.+|.++++.++..++|+|.+|+.+ ++.+..+.+.|+++.|+.+|.++++.+
T Consensus 172 ~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 250 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV 250 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHH
T ss_pred HHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhH
Confidence 9999999753 3333333 78999999999999999999999999999987 466777888999999999999999999
Q ss_pred HHHHHHHHHHHhcCc-chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcC
Q 012413 318 KKDALTTLYKLCSLK-QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDG 395 (464)
Q Consensus 318 ~~~A~~aL~nL~~~~-~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~ 395 (464)
+..|+++|++|+... ...+.+++.|+++.|+.+|.+++..++..|+++|++|+ +.+...+.+++.|+++.|++++.++
T Consensus 251 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 251 VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence 999999999999965 45566788999999999999999999999999999999 5777888899999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 396 SVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 396 ~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
++.+|..|+++|++|+.. ++.....+.+.|+++.|+.++.+++++++..|.++|.++...
T Consensus 331 ~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999976 667777788999999999999999999999999999999864
No 16
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=6.8e-31 Score=272.51 Aligned_cols=266 Identities=18% Similarity=0.177 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCCh----------HHHHHhhcCCC--HH-----HHH-------HHHHHHH
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAV----------PALVPLLKCSD--PW-----TQE-------HSVTALL 244 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i----------~~Ll~lL~~~~--~~-----v~~-------~A~~aL~ 244 (464)
.+++++.+|+++|.+|+...++......+.|++ +.+++++.+.. .+ +++ .|+|+|+
T Consensus 94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 173 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHH
Confidence 457999999999999999999888888888888 66677777642 12 444 9999999
Q ss_pred HhcCCCchHHHHHhcCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhccccc-chhhhhc-cCChHHHHHHhh
Q 012413 245 NLSLHENNKTLITNAGAIKSLVYVLKT-----------GTETSKQNAACALMSLALIEE-NKSSIGA-CGAIPPLVSLLI 311 (464)
Q Consensus 245 ~La~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~-~g~i~~Li~lL~ 311 (464)
|++.++++|+.|.+.|++++|+.+|.. .++.++.+|+|+|.||+.+.+ ++..+.. .|+||.|+.+|.
T Consensus 174 nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~ 253 (458)
T 3nmz_A 174 KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253 (458)
T ss_dssp HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh
Confidence 999999999999999999999999952 346799999999999998864 6767754 566999999999
Q ss_pred cCChhhHHHHHHHHHHHhcC--cchHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhC-CHhhHHHHH-hcCcHH
Q 012413 312 YGSSRGKKDALTTLYKLCSL--KQNKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAG-IAEGREAIV-EENGIA 386 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~--~~~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~-~~g~i~ 386 (464)
++++.++..|+++|+||+.. ++++..+++.|++|.|+.+| .+.+..+++.|+.+|+||+. .++++..|. ..|+++
T Consensus 254 s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~ 333 (458)
T 3nmz_A 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333 (458)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHH
Confidence 99999999999999999984 57889999999999999975 55678899999999999997 788888888 799999
Q ss_pred HHHHHHhcCCH----HHHHHHHHHHHHHhh---cCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 387 ALVEAIEDGSV----KGKEFAVLTLLQLCA---ESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 387 ~Lv~lL~~~~~----~v~~~A~~aL~~L~~---~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.|+++|.+.++ .++..|+++|+||+. .+++++..+.+.|++++|+.+|++++..+++.|+|+|++|+.
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 99999997654 599999999999997 688999999999999999999999999999999999999984
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=1.6e-29 Score=267.49 Aligned_cols=279 Identities=22% Similarity=0.206 Sum_probs=257.9
Q ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQSSS-VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~-~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+.++.|+..|.+++ +.++..|+++|.+++.+++..+..+.+.|+++.|+.+|.++++.++..|+++|++|+.+ +..+.
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 57888899999887 99999999999999999899999999999999999999999999999999999999986 57788
Q ss_pred HHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 255 LITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
.+.+.|+++.|+.+| .+.+..++..++|+|.+|+............|+++.|+.+|.++++.++..|+++|++|+...+
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 276 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN 276 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999 6779999999999999999885444555568999999999999999999999999999998664
Q ss_pred -hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 012413 334 -NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDG-SVKGKEFAVLTLLQL 410 (464)
Q Consensus 334 -~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~L 410 (464)
..+.+++.|+++.|+.+|.+++..++..|+++|++|+. .+.....+++.|+++.|+.+|.++ ++.++..|+++|++|
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999999999995 677888899999999999999998 999999999999999
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+..++.....+.+.|+++.|+.+|.++++.++..|+|+|.+++..
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 998888888899999999999999999999999999999999875
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=1.9e-29 Score=239.40 Aligned_cols=243 Identities=24% Similarity=0.289 Sum_probs=229.2
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSS 296 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~ 296 (464)
|+++.|+.+|++++++++..|+++|.+++... +++..+.+.|+++.|+.+|++++..++..++++|.+|+.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999865 5899999999999999999999999999999999999998 788999
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHh
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAE 374 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~ 374 (464)
+.+.|+++.|+.+|.++++.++..|+++|++|+. .++++..+++.|+++.|+.++.++++.++..++++|++|+. .+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999995 77899999999999999999999999999999999999995 667
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+..+.+.|+++.|++++.++++.++..|+++|++|+..++..+..+.+.|+++.|+++++++++++++.|.++|++|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 77899999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCCCCCC
Q 012413 455 PRQEGPS 461 (464)
Q Consensus 455 ~~~~~~~ 461 (464)
..++...
T Consensus 242 ~~~~~~~ 248 (252)
T 4hxt_A 242 GGWLEHH 248 (252)
T ss_dssp TCBCCC-
T ss_pred CCCcccc
Confidence 8776543
No 19
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.6e-30 Score=260.41 Aligned_cols=268 Identities=22% Similarity=0.215 Sum_probs=231.7
Q ss_pred cCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhccCchhHHH
Q 012413 146 LEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQ-----------SSSVAIKRSAAAKLRLLAKNRSDNRVL 214 (464)
Q Consensus 146 ~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv~~L~-----------s~~~~vr~~A~~~L~~La~~~~~~r~~ 214 (464)
..|+...-+..|....++++.+..+.+. +.++.|+..|. ..++.++..|+++|.+++.+++.++..
T Consensus 45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~---G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDEEHRHAMNEL---GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHc---CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455544556666666667777776654 45555566663 134789999999999999998888888
Q ss_pred HHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcc-
Q 012413 215 IGE-SGAVPALVPLLKCSDPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLAL- 289 (464)
Q Consensus 215 i~~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~- 289 (464)
+.. .|+||.|+.+|+++++++++.|+++|.||+.. +++|..+.+.|+||.|+++| ++++..+++.|+++|++|+.
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 764 56699999999999999999999999999985 57899999999999999975 66789999999999999999
Q ss_pred cccchhhhh-ccCChHHHHHHhhcCCh----hhHHHHHHHHHHHhc----CcchHHHHHHcCCHHHHHHhhcCCCHHHHH
Q 012413 290 IEENKSSIG-ACGAIPPLVSLLIYGSS----RGKKDALTTLYKLCS----LKQNKERAVSAGAVRPLVGMLAGQGEGMAE 360 (464)
Q Consensus 290 ~~~~~~~i~-~~g~i~~Li~lL~~~~~----~v~~~A~~aL~nL~~----~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~ 360 (464)
.++++..++ ..|++|.|+++|.+++. .+++.|+++|+||+. .+++++.+++.|+++.|+.+|.+.+..+++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 467888888 79999999999998754 489999999999996 788999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 361 KAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 361 ~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
+|+++|+||+ .+++++..+++.|+++.|++++.++++.++..|+++|.+|+...+.
T Consensus 282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999 6799999999999999999999999999999999999999987654
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=5.5e-29 Score=263.64 Aligned_cols=279 Identities=20% Similarity=0.193 Sum_probs=253.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~~ 255 (464)
+.++.|+..|+++++.++..|+++|.+++.+++..+..+...|+++.|+.+|.+.++.++..|+++|.+|+.+. +....
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 252 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcH
Confidence 46777788888899999999999999999998899999999999999999999999999999999999999864 44455
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~ 333 (464)
....|++|.|+.+|.++++.++..++++|.+|+.. ++....+.+.|+++.|+.+|.+++..++..|+++|++|+.. +.
T Consensus 253 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~ 332 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 332 (530)
T ss_dssp HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHH
Confidence 66789999999999999999999999999999977 45677788899999999999999999999999999999985 56
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
....+++.|+++.|+.+|.+++..++..|+++|++|+ ..+.....+++.|+++.|+.+|.++++.++..|+++|++|+.
T Consensus 333 ~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 333 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 6677888999999999999999999999999999999 467777888899999999999999999999999999999997
Q ss_pred cC-H--HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 413 ES-V--KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 413 ~~-~--~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.. + .....+.+.|+++.|+.++.+.++.++..|.++|.++...
T Consensus 413 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 413 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 53 3 5677788999999999999999999999999999999764
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=3.2e-28 Score=250.71 Aligned_cols=278 Identities=18% Similarity=0.170 Sum_probs=253.7
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHH
Q 012413 177 PTVKICIDGLQSS-SVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKT 254 (464)
Q Consensus 177 ~~v~~Lv~~L~s~-~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 254 (464)
+.++.|+..|+++ ++.+|..|+++|.+++.++++....+.+.|+++.|+.+|+++++.++..|+++|++++.+ ++.+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6888899999988 899999999999999998788888888899999999999999999999999999999986 47888
Q ss_pred HHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccc--cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC
Q 012413 255 LITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIE--ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~ 331 (464)
.+.+.|+++.|+.+|++ .+..++..++++|.+|+.+. ..+..+. .+++|.|+.++.++++.++..++++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88999999999999996 78999999999999999763 3333333 78999999999999999999999999999995
Q ss_pred -cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012413 332 -KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 332 -~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 409 (464)
++....+++.|+++.|+.+|.+++..++..|+++|++|+. .+...+.+.+.|+++.|++++.++++.++..|+++|++
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4677788899999999999999999999999999999995 46667778889999999999999999999999999999
Q ss_pred HhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 410 LCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 410 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
|+..++.....+.+.|+++.|+.++.++++++|..|+|+|.+++..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9988888888899999999999999999999999999999999864
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=1.5e-28 Score=233.21 Aligned_cols=238 Identities=25% Similarity=0.292 Sum_probs=224.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~ 255 (464)
+.++.|+..|++++++++..|+++|.+++.+.+..+..+.+.|+++.|+.+|++++++++..|+++|.+++.+ ++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3578889999999999999999999999999888999999999999999999999999999999999999997 789999
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-cccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC-cc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLAL-IEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL-KQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~-~~ 333 (464)
+.+.|+++.|+.+|+++++.++..|+++|.+|+. .++.+..+.+.|+++.|+++|.++++.++..++++|++|+.. +.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999995 578899999999999999999999999999999999999995 55
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
.+..+++.|+++.|+.++.++++.++..|+++|++|+. .+..+..+.+.|+++.|++++.++++.++..|+++|++|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 66888999999999999999999999999999999995 77888899999999999999999999999999999999997
Q ss_pred cC
Q 012413 413 ES 414 (464)
Q Consensus 413 ~~ 414 (464)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.96 E-value=1.3e-28 Score=259.30 Aligned_cols=321 Identities=22% Similarity=0.214 Sum_probs=278.9
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
....+++|..++.+ ++.+|..++..|+.++...+....+. .
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~--------------------------------------~ 56 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM--------------------------------------R 56 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH--------------------------------------T
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH--------------------------------------h
Confidence 55679999999987 89999999999999864332211111 1
Q ss_pred chHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cch
Q 012413 175 LQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENN 252 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~ 252 (464)
..+.++.|++.|.+ ++++++..|+.+|.+++.+ ++++..+.+.|+++.|+.+|+++++.++..|+++|.+++.+ ++.
T Consensus 57 ~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch
Confidence 14677888888865 5899999999999999988 66889999999999999999999999999999999999986 577
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCCh-hhHHHHHHHHHHHhc
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSS-RGKKDALTTLYKLCS 330 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~A~~aL~nL~~ 330 (464)
+..+.+.|++|.|+.+|++++..++..++.+|.+++.. ++++..+.+.|+++.|+.+|.+.+. ..+..++.+|++|+.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999985 6889999999999999999998754 466678999999999
Q ss_pred CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQL 410 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L 410 (464)
+++++..+++.|+++.|+.++.+++..++..++++|.+|+....... ...|+++.|++++.++++.++..|+++|++|
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996543221 1247899999999999999999999999999
Q ss_pred hhcCHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcCCC
Q 012413 411 CAESVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 411 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~~L~~~~~ 457 (464)
+..+++.+..+.+.|+++.|+.++.+. ++.++..|.++|++|+...+
T Consensus 294 ~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~ 342 (529)
T 1jdh_A 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342 (529)
T ss_dssp TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred hcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc
Confidence 998888999999999999999999863 47999999999999986543
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=9.3e-29 Score=235.82 Aligned_cols=238 Identities=22% Similarity=0.282 Sum_probs=222.5
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchh
Q 012413 218 SGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKS 295 (464)
Q Consensus 218 ~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~ 295 (464)
....+.++.+|++++++++..|+++|.++.. +++++..+.+.|++|.|+.+|+++++.++..|+++|.+|+.+ ++++.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4568999999999999999999999977554 567888999999999999999999999999999999999984 78899
Q ss_pred hhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH-HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CH
Q 012413 296 SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK-ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IA 373 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~-~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~ 373 (464)
.+.+.|+++.|+.+|.++++.++..|+++|++|+..++.+ ..+++.|+++.|+.+|.+++..++..|+++|++|+. .+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999999999999999999999999999988887 889999999999999999999999999999999995 67
Q ss_pred hhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 374 EGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 374 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..+..+.+.|+++.|++++.++++.++..|+++|++|+..++..+..+.+.|+++.|+.+++++++++++.|+++|.+|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 78888999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cC
Q 012413 454 EP 455 (464)
Q Consensus 454 ~~ 455 (464)
.+
T Consensus 251 ~~ 252 (252)
T 4db8_A 251 SH 252 (252)
T ss_dssp --
T ss_pred cC
Confidence 53
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=265.45 Aligned_cols=348 Identities=18% Similarity=0.174 Sum_probs=291.5
Q ss_pred cchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCc-----------
Q 012413 95 ISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF----------- 162 (464)
Q Consensus 95 ~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~----------- 162 (464)
+....+++|.+++.+ ++.+|..++..|+.++........+.... -.+ ..++..|.....
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~------~~i---~~Lv~~L~~~~~~~~~~~A~~~L 81 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP------QMV---SAIVRTMQNTNDVETARCTAGTL 81 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCH------HHH---HHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhcc------ChH---HHHHHHHhcCCCHHHHHHHHHHH
Confidence 456679999999998 89999999999999998876544333210 022 333666654321
Q ss_pred -----hhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 012413 163 -----STEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237 (464)
Q Consensus 163 -----s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~ 237 (464)
..+....+.. .+.++.|+..|+++++.++..|+++|.+++.+.+..+..+.+.|+++.|+.+|++.+++++.
T Consensus 82 ~~Ls~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~ 158 (644)
T 2z6h_A 82 HNLSHHREGLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 158 (644)
T ss_dssp HHHTTSHHHHHHHHT---TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHH
T ss_pred HHHhcChhhHHHHHH---cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHH
Confidence 1111111111 25889999999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCCh
Q 012413 238 HSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGT-ETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSS 315 (464)
Q Consensus 238 ~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~ 315 (464)
.++.+|.+++. +++++..+.+.|+++.|+.+|++.+ +.++..++.+|++|+.+++++..+++.|+++.|+.++.+.+.
T Consensus 159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~ 238 (644)
T 2z6h_A 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCH
Confidence 99999999997 6789999999999999999998864 678899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhc
Q 012413 316 RGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
.+++.++++|.+|+...... ....++++.|+.+|.+.+..++..|+++|++|+. .+.++..+.+.|+++.|++++.+
T Consensus 239 ~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 239 RLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 99999999999999854322 1224789999999999999999999999999995 56889999999999999999986
Q ss_pred C--CHHHHHHHHHHHHHHhhcCH---HhHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcCC
Q 012413 395 G--SVKGKEFAVLTLLQLCAESV---KNRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLREPR 456 (464)
Q Consensus 395 ~--~~~v~~~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~~~~ 456 (464)
. .+.++..|+++|++|+...+ ..+..+.+.|+++.|+++|.+++ +.+++.|+|+|++|+..+
T Consensus 317 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred cCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 3 37999999999999997543 35667889999999999999875 799999999999998643
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=1e-28 Score=235.56 Aligned_cols=236 Identities=25% Similarity=0.299 Sum_probs=219.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~ 255 (464)
...+.+++.|++++++++..|+++|.++...++..+..+.+.|+++.|+.+|++++++++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456777899999999999999999977665567788889999999999999999999999999999999998 5789999
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccch-hhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Ccc
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENK-SSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~-~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~ 333 (464)
+.+.|+++.|+.+|+++++.++..|+++|.+|+.+++.+ ..+.+.|+++.|+++|.+++..++..|+++|++|+. .++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998877 888999999999999999999999999999999998 457
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
.+..+++.|+++.|+.+|.++++.++..|+++|++|+ ..+..+..+.+.|+++.|++++.++++.++..|+++|++|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 7788889999999999999999999999999999999 677888999999999999999999999999999999999985
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.96 E-value=5.5e-28 Score=254.37 Aligned_cols=318 Identities=19% Similarity=0.174 Sum_probs=275.1
Q ss_pred hhHHHHHHhhhhh--cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 97 EDDYLNVSQAFSD--FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 97 e~~~~~L~~ll~~--~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
+..+++|.++|.+ ++.++..+..+|..++..+++... +.+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~--------------------------------i~~------ 99 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA--------------------------------IFK------ 99 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH--------------------------------HHH------
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH--------------------------------HHH------
Confidence 4678888888864 567788888888887543221111 111
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
.+.++.|+..|+++++.++..|+++|.+++.+++..+..+.+.|+++.|+.+|++++++++..++.+|.+++.. ++++
T Consensus 100 -~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 100 -SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp -TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 25788889999999999999999999999999888888898999999999999999999999999999999984 7889
Q ss_pred HHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 254 TLITNAGAIKSLVYVLKTGT-ETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
..+.+.|+++.|+.+|++++ ...+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++.+++.++++|.+|+...
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 99999999999999998864 56777889999999999999999999999999999999999999999999999999865
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQ 409 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~ 409 (464)
.... ...|+++.|+.++.+.+++++..|+++|++|+. .++++..+.+.|+++.|++++.+ .++.++..|+++|++
T Consensus 259 ~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 259 TKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 4322 124789999999999999999999999999995 46799999999999999999986 348999999999999
Q ss_pred HhhcCHH---hHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcC
Q 012413 410 LCAESVK---NRGLLVREGGIPPLVALSQTGS-VRAKHKAETLLGYLREP 455 (464)
Q Consensus 410 L~~~~~~---~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~~L~~~ 455 (464)
|+..++. .+..+.+.|+++.|+.++++++ +.++..|+|+|++++..
T Consensus 337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 9976433 5778999999999999999986 59999999999999864
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=8.1e-28 Score=260.94 Aligned_cols=345 Identities=19% Similarity=0.165 Sum_probs=285.3
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhc-CCCchhhhhcCcccCcccccCCCchhhhhhhcccCc-----------
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLAS-LPSPENILRQPNENNCQAELEPEPEPCLGFLQRENF----------- 162 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~-~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~----------- 162 (464)
....++.|.++|.+ ++.++..+..+|..++. .++....+...+ .+|.+ +..++..+.
T Consensus 138 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g-------~v~~L---v~lL~~~~~~~~~~~a~~~L 207 (644)
T 2z6h_A 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GPQAL---VNIMRTYTYEKLLWTTSRVL 207 (644)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-------HHHHH---HHHHTTCCCHHHHHHHHHHH
T ss_pred HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcC-------ChHHH---HHHHHcCChHHHHHHHHHHH
Confidence 46778999999988 77777778889999886 333444444333 33333 555544321
Q ss_pred -----hhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 012413 163 -----STEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237 (464)
Q Consensus 163 -----s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~ 237 (464)
+.+....+.. .+.++.|+..+.+.+..++..++++|.+++.+.+.. ....++++.|+.+|++.+++++.
T Consensus 208 ~nLs~~~~~~~~l~~---~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~ 281 (644)
T 2z6h_A 208 KVLSVCSSNKPAIVE---AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVT 281 (644)
T ss_dssp HHHTTCTTHHHHHHH---TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHhcCcccHHHHHH---CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHH
Confidence 1111111111 247888899999999999999999999999875432 12347899999999999999999
Q ss_pred HHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhccc-c---cchhhhhccCChHHHHHHh
Q 012413 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTG--TETSKQNAACALMSLALI-E---ENKSSIGACGAIPPLVSLL 310 (464)
Q Consensus 238 ~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~-~---~~~~~i~~~g~i~~Li~lL 310 (464)
.|+++|.+|+.+ ++++..+.+.|+++.|+.+|.+. .+.++..|+++|.+|+.. + ..+..+.+.|+++.|+++|
T Consensus 282 ~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL 361 (644)
T 2z6h_A 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHh
Confidence 999999999986 47889999999999999999874 379999999999999875 2 2455688899999999999
Q ss_pred hcCC-hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCC----------------------CHHHHHHHHHHHH
Q 012413 311 IYGS-SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQ----------------------GEGMAEKAMVVLS 367 (464)
Q Consensus 311 ~~~~-~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~----------------------~~~v~~~A~~aL~ 367 (464)
.+++ ..+++.|+++|+||+.+++++..+++.|+++.|+.+|.+. ..+++..++.+|+
T Consensus 362 ~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~ 441 (644)
T 2z6h_A 362 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 441 (644)
T ss_dssp STTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHH
Confidence 9875 6899999999999999999999999999999999999763 2456778999999
Q ss_pred HHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHH
Q 012413 368 LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAET 447 (464)
Q Consensus 368 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~ 447 (464)
+|+..+.++..+.+.|+++.|++++.+.++.++..|+++|++|+.. +..+..+.+.|+++.|.+++++++++++..|++
T Consensus 442 ~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~ 520 (644)
T 2z6h_A 442 ILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 520 (644)
T ss_dssp HHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864 778889999999999999999999999999999
Q ss_pred HHHHhhcCCC
Q 012413 448 LLGYLREPRQ 457 (464)
Q Consensus 448 aL~~L~~~~~ 457 (464)
+|.+|.+++.
T Consensus 521 aL~~l~~~~~ 530 (644)
T 2z6h_A 521 VLFRMSEDKP 530 (644)
T ss_dssp HHHHHTTTSC
T ss_pred HHHHHhccCc
Confidence 9999998763
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=3.3e-27 Score=261.49 Aligned_cols=345 Identities=19% Similarity=0.171 Sum_probs=282.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcC-CCchhhhhcCcccCcccccCCCchhhhhhhcccCchh---------
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASL-PSPENILRQPNENNCQAELEPEPEPCLGFLQRENFST--------- 164 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~-~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~--------- 164 (464)
....++.|.++|.+ ...++..+..+|..++.. ++....+...+ .+ +.++..++..+...
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~-------~i---~~Lv~lL~~~~~~~~~~~a~~aL 343 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-------GP---QALVNIMRTYTYEKLLWTTSRVL 343 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTT-------HH---HHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC-------CH---HHHHHHHhcCCHHHHHHHHHHHH
Confidence 45678899999987 777788888888888753 22333333222 22 23355555432210
Q ss_pred -------hHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 012413 165 -------EIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237 (464)
Q Consensus 165 -------~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~ 237 (464)
+....+.. .+.++.|+..|.+.++.++..|+++|.+++...... ....++++.|+.+|++.+++++.
T Consensus 344 ~~Ls~~~~~~~~i~~---~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~ 417 (780)
T 2z6g_A 344 KVLSVCSSNKPAIVE---AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVT 417 (780)
T ss_dssp HHHHTSTTHHHHHHH---TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHhhcChHHHHHHHH---hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHH
Confidence 01111111 247788899999999999999999999999875432 12357899999999999999999
Q ss_pred HHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcccc-c---chhhhhccCChHHHHHHh
Q 012413 238 HSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTG--TETSKQNAACALMSLALIE-E---NKSSIGACGAIPPLVSLL 310 (464)
Q Consensus 238 ~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~-~---~~~~i~~~g~i~~Li~lL 310 (464)
.|+++|.+|+.+ ++.+..+.+.|+++.|+.+|.+. .+.++..|+++|++|+... + .+..+...|+++.|+++|
T Consensus 418 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL 497 (780)
T 2z6g_A 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL 497 (780)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHh
Confidence 999999999986 47888999999999999999873 3589999999999998753 2 356788899999999999
Q ss_pred hcCCh-hhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCC----------------------HHHHHHHHHHHH
Q 012413 311 IYGSS-RGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQG----------------------EGMAEKAMVVLS 367 (464)
Q Consensus 311 ~~~~~-~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~----------------------~~v~~~A~~aL~ 367 (464)
.+++. .+++.|+++|+||+.+++++..+++.|+++.|+.+|.+.+ .+++..++.+|+
T Consensus 498 ~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~ 577 (780)
T 2z6g_A 498 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALH 577 (780)
T ss_dssp STTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHH
Confidence 98875 9999999999999999999988999999999999997532 346778999999
Q ss_pred HHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHH
Q 012413 368 LLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAET 447 (464)
Q Consensus 368 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~ 447 (464)
+|+..+.++..+.+.|+++.|++++.+.++.++..|+.+|++|+. .+..+..+.+.|+++.|+.++.++++.+|..|++
T Consensus 578 ~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~ 656 (780)
T 2z6g_A 578 ILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 656 (780)
T ss_dssp HHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 999989999999999999999999999999999999999999984 5778889999999999999999999999999999
Q ss_pred HHHHhhcCCC
Q 012413 448 LLGYLREPRQ 457 (464)
Q Consensus 448 aL~~L~~~~~ 457 (464)
+|.+|..+.+
T Consensus 657 aL~~l~~~~~ 666 (780)
T 2z6g_A 657 VLFRMSEDKP 666 (780)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHcCCh
Confidence 9999998765
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.95 E-value=1.5e-26 Score=256.12 Aligned_cols=278 Identities=24% Similarity=0.235 Sum_probs=248.9
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
.+.++.|+..|++ .++.+|..|+.+|.+++.+ +.++..+.+.|+|+.|+.+|+++++.++..|+++|.+|+.+ ++.+
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 4688888999975 4899999999999999988 56688888999999999999999999999999999999986 5777
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChh-hHHHHHHHHHHHhcC
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSR-GKKDALTTLYKLCSL 331 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~-v~~~A~~aL~nL~~~ 331 (464)
..+.+.|+++.|+.+|++++..++..++.+|.+++.. ++++..+.+.|+++.|+.+|++.+.. .+..++.+|++|+..
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 7888999999999999999999999999999999974 78899999999999999999987554 556889999999999
Q ss_pred cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 332 KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 332 ~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
+.++..+++.|+++.|+.++.+.+..++..++++|.+|+...... ....++++.|++++++.++.++..|+++|++|+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999643221 122568999999999999999999999999999
Q ss_pred hcCHHhHHHHHHcCChHHHHHhhhc-CC-HHHHHHHHHHHHHhhcCC
Q 012413 412 AESVKNRGLLVREGGIPPLVALSQT-GS-VRAKHKAETLLGYLREPR 456 (464)
Q Consensus 412 ~~~~~~~~~i~~~g~i~~Lv~lL~s-~~-~~v~~~A~~aL~~L~~~~ 456 (464)
..++..+..+.+.|+++.|+.+|.+ ++ +.++..|+++|++|+...
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 9988899999999999999999987 33 499999999999998643
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=241.54 Aligned_cols=354 Identities=14% Similarity=0.106 Sum_probs=280.6
Q ss_pred cccCCcchhHHHHHHhhhhhcccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccC--------
Q 012413 90 SVKSTISEDDYLNVSQAFSDFSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQREN-------- 161 (464)
Q Consensus 90 ~~~~~~~e~~~~~L~~ll~~~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~-------- 161 (464)
.-+.-+.+..+++|.+++++ ..+|.-+.-.|-++...+..... + .....+.|+.+|...+
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~-~~ir~lAavvL~KL~~~~~~~~~-------s----i~~La~~~~~~L~~~~~~~~~~Av 355 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV-EDVQIYSALVLVKTWSFTKLTCI-------N----LKQLSEIFINAISRRIVPKVEMSV 355 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-GGGHHHHHHHHHHHTGGGTCTTC-------C----HHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCCCcC-------c----HHHHHHHHHHHHhcCCccHHHHHH
Confidence 34556678888999999876 46788888899888765543211 1 1112233344554422
Q ss_pred -------chhhHhhhcCCCCchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCch-----------------------
Q 012413 162 -------FSTEIIESISPEDLQPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSD----------------------- 210 (464)
Q Consensus 162 -------~s~~i~~~~~~~~~~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~----------------------- 210 (464)
...++.+.+... .+.++.|++.++. .+..+...++.+|.|++...+.
T Consensus 356 EgLaYLSl~~~VKe~L~~d--~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~ 433 (778)
T 3opb_A 356 EALAYLSLKASVKIMIRSN--ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAAD 433 (778)
T ss_dssp HHHHHHTTSSHHHHHHHHC--HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------------
T ss_pred HHHHHHhCCHHHHHHHHhC--HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccC
Confidence 233445544444 6789999999995 7778899999999999974331
Q ss_pred ---------------hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHH
Q 012413 211 ---------------NRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTET 275 (464)
Q Consensus 211 ---------------~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 275 (464)
++..+.+.|++|.|+.++.+.++.+++.|+++|.+|+.++++|..+++.|++++|+.+|.++...
T Consensus 434 ~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~ 513 (778)
T 3opb_A 434 KVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDI 513 (778)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---
T ss_pred cccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCc
Confidence 45677889999999999999999999999999999999999999999999999999999988655
Q ss_pred ---HHHHHHHHHHHhcccccchhhhh--c-cCChHHHHHHhhc-CChh-------------hHHHHHHHHHHHhcCc---
Q 012413 276 ---SKQNAACALMSLALIEENKSSIG--A-CGAIPPLVSLLIY-GSSR-------------GKKDALTTLYKLCSLK--- 332 (464)
Q Consensus 276 ---v~~~a~~aL~~Ls~~~~~~~~i~--~-~g~i~~Li~lL~~-~~~~-------------v~~~A~~aL~nL~~~~--- 332 (464)
.+..|+.+|.+|+...+....+. . .|+|++|+.+|.. +... -+..|+.+|.||+..+
T Consensus 514 ~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~ 593 (778)
T 3opb_A 514 GEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSD 593 (778)
T ss_dssp CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHH
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCccc
Confidence 89999999999986544333332 1 4899999999983 2211 2779999999999976
Q ss_pred --chHHHHHHc-CCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhH-HHHHhc------CcHHHHHHHHhcCCHHHHHH
Q 012413 333 --QNKERAVSA-GAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGR-EAIVEE------NGIAALVEAIEDGSVKGKEF 402 (464)
Q Consensus 333 --~~~~~iv~~-g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~------g~i~~Lv~lL~~~~~~v~~~ 402 (464)
+.+..++.+ |+++.|..+|.+++..++..|+++++||+.+++.. +.+.+. +.++.|+.++.+++.++|..
T Consensus 594 ~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~A 673 (778)
T 3opb_A 594 GEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRA 673 (778)
T ss_dssp HHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHH
T ss_pred chHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHH
Confidence 347888885 99999999999999999999999999999988764 355432 24889999999999999999
Q ss_pred HHHHHHHHhhcCHHhHHHHHHc-CChHHHHHhhhc--CCHHHHHHHHHHHHHhhcCCC
Q 012413 403 AVLTLLQLCAESVKNRGLLVRE-GGIPPLVALSQT--GSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 403 A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~s--~~~~v~~~A~~aL~~L~~~~~ 457 (464)
|+++|.+++...+..+..+.+. ++++.|+.++++ ++++++.+++.++.++.++.+
T Consensus 674 AagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 674 VAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999987778777777776 899999999999 899999999999999998543
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=6.9e-25 Score=203.31 Aligned_cols=198 Identities=22% Similarity=0.286 Sum_probs=184.6
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchH
Q 012413 258 NAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNK 335 (464)
Q Consensus 258 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~ 335 (464)
..|..+.|+.+|+++++.++..|+++|.+|+.. ++.+..+.+.|+++.|+++|.++++.++..|+++|++|+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 467899999999999999999999999999965 6788899999999999999999999999999999999996 66888
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
..+++.|+++.|+.+|.+++..++..|+++|+||+ ..+..+..+.+.|+++.|++++.++++.++..|+++|++|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999 56777888999999999999999999999999999999999988
Q ss_pred HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 415 VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 415 ~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+..+..+.+.|+++.|+.++.++++++++.|.++|++|+++
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999853
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=1.8e-24 Score=200.42 Aligned_cols=196 Identities=24% Similarity=0.294 Sum_probs=182.0
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccch
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENK 294 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~ 294 (464)
..|+.+.|+.+|++++++++..|+++|.+++. +++.+..+.+.|+++.|+.+|+++++.++..|+++|.+|+.+ ++.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45889999999999999999999999999996 568888999999999999999999999999999999999965 6788
Q ss_pred hhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-
Q 012413 295 SSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI- 372 (464)
Q Consensus 295 ~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~- 372 (464)
..+.+.|+++.|+.+|.++++.++..|+++|++|+. .++.+..+++.|+++.|+.++.+++..++..|+++|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999997 456778889999999999999999999999999999999965
Q ss_pred HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 373 AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
++.+..+.+.|+++.|++++.++++.++..|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999984
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=203.64 Aligned_cols=195 Identities=19% Similarity=0.194 Sum_probs=175.1
Q ss_pred hHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCch
Q 012413 176 QPTVKICIDGLQSSSV--AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENN 252 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~--~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~ 252 (464)
.-.++.+++.|+++++ .++..|+++|.+++.+++.++..+.+.|+||+|+.+|+++++++++.|+++|.||+. ++++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3567888999999888 899999999999999989999999999999999999999999999999999999998 5799
Q ss_pred HHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc----------------CCh
Q 012413 253 KTLITNAGAIKSLVYVLK-TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY----------------GSS 315 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~----------------~~~ 315 (464)
+..|.+.|+||+|+++|+ .++.+++++|+.+|++|+.++++|..|++. ++|+|+.++.. .++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 479999999999999999999999999874 69999987631 256
Q ss_pred hhHHHHHHHHHHHhc-CcchHHHHHHc-CCHHHHHHhhcCC------CHHHHHHHHHHHHHHhC
Q 012413 316 RGKKDALTTLYKLCS-LKQNKERAVSA-GAVRPLVGMLAGQ------GEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~-~~~~~~~iv~~-g~v~~Lv~lL~~~------~~~v~~~A~~aL~nLa~ 371 (464)
.++.+|+.+|+||+. ++++|..|.+. |+|+.|+.+++.. +...+++|+.+|+||+.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 899999999999998 56899999985 6689999999752 45679999999999985
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=202.09 Aligned_cols=194 Identities=19% Similarity=0.191 Sum_probs=174.9
Q ss_pred CChHHHHHhhcCCCH--HHHHHHHHHHHHhcC-CCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccch
Q 012413 219 GAVPALVPLLKCSDP--WTQEHSVTALLNLSL-HENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENK 294 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~--~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~ 294 (464)
-.+|.|+++|+++++ +++..|+++|.+++. +++++..+.+.|+||+|+.+|++++++++..|+|+|.||+.. +++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 458999999999887 999999999999996 578999999999999999999999999999999999999985 7899
Q ss_pred hhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhc----------------CCCHH
Q 012413 295 SSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA----------------GQGEG 357 (464)
Q Consensus 295 ~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~----------------~~~~~ 357 (464)
..|++.|+||+|+++|.+ ++..+++.|+.+|+||+.+++++..+++. +++.|+.++. ..+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999985 68999999999999999999999999875 7999998763 12568
Q ss_pred HHHHHHHHHHHHhC-CHhhHHHHHhc-CcHHHHHHHHhcC------CHHHHHHHHHHHHHHhhc
Q 012413 358 MAEKAMVVLSLLAG-IAEGREAIVEE-NGIAALVEAIEDG------SVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 358 v~~~A~~aL~nLa~-~~~~~~~i~~~-g~i~~Lv~lL~~~------~~~v~~~A~~aL~~L~~~ 413 (464)
++++|+++|.||+. .+++|+.+.+. |+|+.|+.+++.. +...+++|+.+|+||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999995 67999999985 6789999999852 668999999999999853
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.1e-23 Score=222.50 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=232.5
Q ss_pred CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCCC
Q 012413 173 EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPLLKC-SDPWTQEHSVTALLNLSLHE 250 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~~ 250 (464)
..+..+.+.++++|.+++.+.+.+|++.|.+++.+ +..|+.+.+ .|+++.|+.++++ .+..+...++.+|.|++...
T Consensus 330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence 34567889999999998888899999999999998 666666665 6779999999996 78889999999999998732
Q ss_pred c---------------------------------------hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc
Q 012413 251 N---------------------------------------NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE 291 (464)
Q Consensus 251 ~---------------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~ 291 (464)
+ ++..+.+.|++|.|+.+++++++.+|..++++|.+|+.++
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 2 3456778999999999999999999999999999999999
Q ss_pred cchhhhhccCChHHHHHHhhcCChh---hHHHHHHHHHHHhcCcchHHHHHH---cCCHHHHHHhhcC-CCH--------
Q 012413 292 ENKSSIGACGAIPPLVSLLIYGSSR---GKKDALTTLYKLCSLKQNKERAVS---AGAVRPLVGMLAG-QGE-------- 356 (464)
Q Consensus 292 ~~~~~i~~~g~i~~Li~lL~~~~~~---v~~~A~~aL~nL~~~~~~~~~iv~---~g~v~~Lv~lL~~-~~~-------- 356 (464)
++|..+++.|++++|+.+|.+.... ++..|+.+|++|+.+.+....|-. .|++++|+.+|.. +..
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 9999999999999999999987544 899999999999975544433311 3899999999982 221
Q ss_pred -----HHHHHHHHHHHHHhCCH-----hhHHHHHhc-CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhH-HHHHH-
Q 012413 357 -----GMAEKAMVVLSLLAGIA-----EGREAIVEE-NGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNR-GLLVR- 423 (464)
Q Consensus 357 -----~v~~~A~~aL~nLa~~~-----~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~-~~i~~- 423 (464)
-.+.+|+.+|.|||..+ +.+..|+.+ |+++.|.++|.+++..+|..|+++|+||+... ... ..+.+
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~ 647 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-LTIAAKFFNL 647 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhh
Confidence 12779999999999764 457888885 99999999999999999999999999999754 332 23322
Q ss_pred -----cCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 424 -----EGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 424 -----~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
.+.+++|+.++.+++.++|+.|+|||.+++
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 224889999999999999999999999995
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=1.5e-22 Score=198.82 Aligned_cols=223 Identities=16% Similarity=0.098 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHh
Q 012413 233 PWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY-VLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLL 310 (464)
Q Consensus 233 ~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL 310 (464)
.+-+..|+..|.+++.+.++...++..|++|+|+. +|+++++.++..|+|+|++++.+ +..+..+++.|++|+|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 46788999999999998889999999999999999 99999999999999999999987 57888999999999999999
Q ss_pred hcC-ChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHH
Q 012413 311 IYG-SSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAA 387 (464)
Q Consensus 311 ~~~-~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~ 387 (464)
.++ +..+++.|+++|++|+.+ ++..+.+++.|+++.|+.+|.+.+..++..|+++|.+|+ ..++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 889999999999999985 567788999999999999999999999999999999999 56889999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc-CChHH----HHHhhhc-C-CHHHHHHHHHHHHHhhcC
Q 012413 388 LVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVRE-GGIPP----LVALSQT-G-SVRAKHKAETLLGYLREP 455 (464)
Q Consensus 388 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~----Lv~lL~s-~-~~~v~~~A~~aL~~L~~~ 455 (464)
|+.+|.+++..++..|+++|++|+...+.....+... ..+.. -++-++. + +.++.+.|..++..+-..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998765544433321 11211 2333442 2 468888899999877643
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=1.1e-21 Score=192.71 Aligned_cols=235 Identities=17% Similarity=0.146 Sum_probs=192.3
Q ss_pred hHHHHHHHHhcCCCC------------HHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHH
Q 012413 176 QPTVKICIDGLQSSS------------VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVP-LLKCSDPWTQEHSVTA 242 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~------------~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~-lL~~~~~~v~~~A~~a 242 (464)
...++.++..|.++. .+-|..|+..|.++..+ .++...+.+.|++|+|+. +|+++++.++..|+++
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~ 105 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQL 105 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345667777777652 35788899999999987 567788889999999999 9999999999999999
Q ss_pred HHHhcCC-CchHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHH
Q 012413 243 LLNLSLH-ENNKTLITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKK 319 (464)
Q Consensus 243 L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~ 319 (464)
|++++.+ +..++.+++.|++|+|+.+|++ ++..++..|+|+|.+|+.+ +...+.+.+.|++|.|+.+|.+++..+++
T Consensus 106 Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~ 185 (296)
T 1xqr_A 106 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV 185 (296)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 9999985 6788899999999999999996 4899999999999999976 46677888999999999999999999999
Q ss_pred HHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhc-CcHH----HHHHHH
Q 012413 320 DALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEE-NGIA----ALVEAI 392 (464)
Q Consensus 320 ~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~-g~i~----~Lv~lL 392 (464)
.|+++|.+|+. +++.+..+++.|+++.|+.+|.+++..+++.|+.+|++|+.. +.....+... ..+. .-.+-+
T Consensus 186 ~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~l 265 (296)
T 1xqr_A 186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265 (296)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHc
Confidence 99999999998 577899999999999999999999999999999999999965 3333333321 1122 222333
Q ss_pred hcC--CHHHHHHHHHHHHHHh
Q 012413 393 EDG--SVKGKEFAVLTLLQLC 411 (464)
Q Consensus 393 ~~~--~~~v~~~A~~aL~~L~ 411 (464)
+.. ..++...|..++-++.
T Consensus 266 q~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 266 QQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp TTCGGGHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHc
Confidence 322 3566666666666655
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.72 E-value=5.5e-16 Score=149.94 Aligned_cols=255 Identities=13% Similarity=0.044 Sum_probs=202.1
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
++..++.|.++|.| ++.+|..+..+|+++. +
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~------------~------------------------------------ 52 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRG------------G------------------------------------ 52 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC------------C------------------------------------
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccC------------C------------------------------------
Confidence 34567888888888 8888988888888761 0
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHhcCC-Cch
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALV-PLLKCSDPWTQEHSVTALLNLSLH-ENN 252 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll-~lL~~~~~~v~~~A~~aL~~La~~-~~~ 252 (464)
...++.|+..|.++++.+|..|+++|..+........ ..++.|. .+++++++.++..|+++|+++... +..
T Consensus 53 -~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~ 125 (280)
T 1oyz_A 53 -QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY 125 (280)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred -chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc
Confidence 2466777888999999999999999988864322111 1233444 346789999999999999998742 211
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 253 KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 253 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
....++.|+.+|+++++.+|..|+++|.++. +.++++.|+.++.++++.+|..|+++|+.+....
T Consensus 126 -----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 126 -----SPKIVEQSQITAFDKSTNVRRATAFAISVIN----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred -----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc
Confidence 2346899999999999999999999999873 3458999999999999999999999999985432
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
+ .+++.|+.++.+++..++..|+.+|+.+.. ..+++.|+..+.+++ ++..|+.+|+.+..
T Consensus 191 ~--------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 191 S--------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp H--------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred H--------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2 367899999999999999999999998873 568999999998754 89999999999874
Q ss_pred cCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHH
Q 012413 413 ESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGY 451 (464)
Q Consensus 413 ~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~ 451 (464)
..+++.|..++.+ .++++...+..+|+.
T Consensus 251 -----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 251 -----------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -----------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -----------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 2578999999976 467888888888764
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=4.4e-16 Score=164.07 Aligned_cols=276 Identities=15% Similarity=0.143 Sum_probs=225.1
Q ss_pred hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhcCCC-c
Q 012413 176 QPTVKICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--SDPWTQEHSVTALLNLSLHE-N 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--~~~~v~~~A~~aL~~La~~~-~ 251 (464)
..+|+.|...+++ .-.+-|+.|+..|+.++++.+ ..+ ..++++.|+..|+. .|.++...++.+|.++.... +
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~---~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR---LEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT---THH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH---HHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 5688888888875 558899999999999997643 333 46899999999987 68999999999999876532 1
Q ss_pred h-----------------HHH-HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-c-cchhhhhc-cCChHHHHHHh
Q 012413 252 N-----------------KTL-ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-E-ENKSSIGA-CGAIPPLVSLL 310 (464)
Q Consensus 252 ~-----------------~~~-i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~-~~~~~i~~-~g~i~~Li~lL 310 (464)
. .+. +.+.+.|+.|+.+|++.+..+|.+++..|..|+.+ + ..+..|.. .++|+.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 1 112 23578999999999999999999999999999977 3 47888885 69999999999
Q ss_pred hcCChhhHHHHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcCCC----HHHHHHHHHHHHHHh-CCHhhHHHHHhcCc
Q 012413 311 IYGSSRGKKDALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAGQG----EGMAEKAMVVLSLLA-GIAEGREAIVEENG 384 (464)
Q Consensus 311 ~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~~~----~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~ 384 (464)
.+....+|..++.+|.+|+.+....++++. +|+++.|+.++..++ ..+...++.+|.||. .++.++..+.+.|+
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999999999999999999997776666665 799999999998755 378999999999999 56678999999999
Q ss_pred HHHHHHHHhcCC------HHHHHH---HHHHHHHHhhc------CHHhHHHHHHcCChHHHHHhhhcC--CHHHHHHHHH
Q 012413 385 IAALVEAIEDGS------VKGKEF---AVLTLLQLCAE------SVKNRGLLVREGGIPPLVALSQTG--SVRAKHKAET 447 (464)
Q Consensus 385 i~~Lv~lL~~~~------~~v~~~---A~~aL~~L~~~------~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~ 447 (464)
++.|..+++.+. +....+ +..++.-|+.. .+.++..+++.|++++|++++.+. ...++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 999999997432 223333 56666666654 346788999999999999999886 5689988888
Q ss_pred HHHHhhcC
Q 012413 448 LLGYLREP 455 (464)
Q Consensus 448 aL~~L~~~ 455 (464)
++..+.+.
T Consensus 336 tla~~irg 343 (651)
T 3grl_A 336 TVSEVIRG 343 (651)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 88877654
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=3e-15 Score=157.74 Aligned_cols=338 Identities=12% Similarity=0.084 Sum_probs=244.5
Q ss_pred cCCcchhHHHHHHhhhhh--cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhh
Q 012413 92 KSTISEDDYLNVSQAFSD--FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIES 169 (464)
Q Consensus 92 ~~~~~e~~~~~L~~ll~~--~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~ 169 (464)
..+.-+|.++.|+.=+++ ...=|+.|+.+|+.++. ++...+... -++.++..|+.+..+.++.+
T Consensus 15 ~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk--~y~~~Vg~~-----------~l~~li~~L~~d~~D~e~v~- 80 (651)
T 3grl_A 15 PQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSK--KYRLEVGIQ-----------AMEHLIHVLQTDRSDSEIIG- 80 (651)
T ss_dssp ---CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT--TTTTHHHHH-----------THHHHHHHHHSCTTCHHHHH-
T ss_pred CCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHH--HhHHHhhhh-----------hHHHHHHHHhcccccHHHHH-
Confidence 345678899999998887 55569999999999853 333332211 13445777777665455544
Q ss_pred cCCCCchHHHHHHHHhcCCCCHHH--H--HHHHHHHHHHhccCchhHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 012413 170 ISPEDLQPTVKICIDGLQSSSVAI--K--RSAAAKLRLLAKNRSDNRVL-IGESGAVPALVPLLKCSDPWTQEHSVTALL 244 (464)
Q Consensus 170 ~~~~~~~~~v~~Lv~~L~s~~~~v--r--~~A~~~L~~La~~~~~~r~~-i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~ 244 (464)
.+++.|...+...+.+- + ..+..-++ ..+.+. +.+.+.|+.|+.+|++++..+|..++..|.
T Consensus 81 -------~~LetL~~l~~~~~~~~~~~~~~~~~~~~~------~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~ 147 (651)
T 3grl_A 81 -------YALDTLYNIISNDEEEEVEENSTRQSEDLG------SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLT 147 (651)
T ss_dssp -------HHHHHHHHHHCCC--------------CHH------HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhCCCCcccccccccccchHHH------HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHH
Confidence 34445444443221110 0 00000000 011122 345789999999999999999999999999
Q ss_pred HhcCC-Cc-hHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCCh----h
Q 012413 245 NLSLH-EN-NKTLITN-AGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSS----R 316 (464)
Q Consensus 245 ~La~~-~~-~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~----~ 316 (464)
.|+.+ ++ .++.|.. .++|+.|+.+|.+..+.+|-.++..|.+|+.+. +.+..+.-.|+|+.|+.++..+.. .
T Consensus 148 ~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggi 227 (651)
T 3grl_A 148 SLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGI 227 (651)
T ss_dssp HHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHH
T ss_pred HHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccch
Confidence 99875 33 6777775 699999999999999999999999999999985 455555557999999999988643 6
Q ss_pred hHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHH------HHHH---HHHHHHHHhCC-------HhhHHHH
Q 012413 317 GKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEG------MAEK---AMVVLSLLAGI-------AEGREAI 379 (464)
Q Consensus 317 v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~------v~~~---A~~aL~nLa~~-------~~~~~~i 379 (464)
+...++.+|.||.+. +.|+..|.+.|+++.|..+|..+... ...+ ++.++.-|... ..++..+
T Consensus 228 vv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~ 307 (651)
T 3grl_A 228 VVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAM 307 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 888999999999995 56999999999999999999754321 2223 56666667632 3578899
Q ss_pred HhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcC-----ChHHHHH----hhhcC-CHHHHHHHHH
Q 012413 380 VEENGIAALVEAIEDG--SVKGKEFAVLTLLQLCAESVKNRGLLVREG-----GIPPLVA----LSQTG-SVRAKHKAET 447 (464)
Q Consensus 380 ~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g-----~i~~Lv~----lL~s~-~~~v~~~A~~ 447 (464)
.+.|+++.|++++... ...++..|+.+++.+.+.++.++..+.+.. ..+.++. ++.+. ..++|..|+.
T Consensus 308 ~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~ 387 (651)
T 3grl_A 308 FQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLY 387 (651)
T ss_dssp HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHH
Confidence 9999999999999865 788999999999999999999999998754 2334444 35444 4689999999
Q ss_pred HHHHhhcCC
Q 012413 448 LLGYLREPR 456 (464)
Q Consensus 448 aL~~L~~~~ 456 (464)
.++.+....
T Consensus 388 cl~ay~~~N 396 (651)
T 3grl_A 388 CFQCFLYKN 396 (651)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 998877543
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.69 E-value=1.1e-15 Score=147.84 Aligned_cols=227 Identities=11% Similarity=0.030 Sum_probs=184.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..++.|+..|.++++.+|..|+++|..+.. .++++.|+.+|+++++.++..|+++|+.+...+....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence 467788999999999999999999988762 3578999999999999999999999999875433211
Q ss_pred HhcCcHHHHH-HHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 257 TNAGAIKSLV-YVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 257 ~~~g~i~~Lv-~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
..++.|. .+++++++.+|..++++|..+..... ......++.|+.+|.++++.+|..|+.+|+++..
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 1334444 35678899999999999999864211 0123458999999999999999999999998643
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV 415 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~ 415 (464)
.++++.|+.++.+++..++..|+++|+.+.... ..+++.|+.++.++++.+|..|+++|+.+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 358999999999999999999999999986321 2468899999999999999999999999973
Q ss_pred HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 416 KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 416 ~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..+++.|+.++.+++ ++..|.++|+.+..
T Consensus 222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp --------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred --------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 357899999998755 99999999999865
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.68 E-value=2.1e-15 Score=139.58 Aligned_cols=194 Identities=20% Similarity=0.180 Sum_probs=165.0
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhh
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
..+.++.|+.+|+++++.++..|+.+|+.+.. .++++.|+.+|.++++.+|..++++|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 45789999999999999999999999988753 468999999999999999999999999973
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhH
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGR 376 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 376 (464)
..++++.|+.+|.++++.++..|+.+|+.+.. .++++.|+.++.++++.++..|+.+|+.+..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 35678999999999999999999999998753 3488999999999999999999999999864
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
...++.|+.++.++++.++..|+.+|+.+.. ..+++.|..++.++++.||..|.++|..+....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 4589999999999999999999999999963 236788999999999999999999999999877
Q ss_pred CCCCC
Q 012413 457 QEGPS 461 (464)
Q Consensus 457 ~~~~~ 461 (464)
.+.++
T Consensus 206 ~~~~~ 210 (211)
T 3ltm_A 206 HHHHH 210 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 66543
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.66 E-value=7.4e-15 Score=135.92 Aligned_cols=188 Identities=26% Similarity=0.278 Sum_probs=163.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
...++.|+..|+++++.+|..|+..|..+.. .++++.|+.+|+++++.++..|+.+|+.+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 5788999999999999999999999976643 378999999999999999999999998875
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
..++++.|+.+|+++++.+|..++++|..+. +.++++.|+++|.++++.++..|+.+|+.+..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 2468999999999999999999999999973 34578999999999999999999999999843
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
..+++.|+.++.++++.++..|+.+|+.+.. ..+++.|.+++.++++.+|..|..+|.++....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3478999999999999999999999998864 457889999999999999999999999998654
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.65 E-value=1.4e-14 Score=132.91 Aligned_cols=185 Identities=26% Similarity=0.285 Sum_probs=164.4
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
....+.+++.|+++++.+|..|+.+|..+.. .++++.|+.+|+++++.++..|+.+|+.+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 5788889999999999999999999976653 367999999999999999999999998875
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNK 335 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~ 335 (464)
..++++.|+.+|.++++.+|..|+++|..+. +..+++.|+.+|.++++.++..|+++|+.+..
T Consensus 74 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 74 --DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 2358999999999999999999999999973 34578999999999999999999999999753
Q ss_pred HHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 336 ERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 336 ~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
.+.++.|+.++.++++.++..|+.+|+.+.. ..+++.|..++.++++.++..|+.+|..+.
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999998853 357889999999999999999999999875
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.64 E-value=1.1e-14 Score=133.66 Aligned_cols=187 Identities=20% Similarity=0.195 Sum_probs=165.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhh
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSS 296 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 296 (464)
..+..+.++.+|+++++.++..|+.+|+.+.. .++++.|+.+|.++++.+|..++++|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 34678899999999999999999999988752 368999999999999999999999999873
Q ss_pred hhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhH
Q 012413 297 IGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGR 376 (464)
Q Consensus 297 i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 376 (464)
...+++.|+.+|.++++.+|..|+++|+.+.. .++++.|+.++.++++.++..|+.+|+.+..
T Consensus 74 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 74 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 34678999999999999999999999998753 3488999999999999999999999998864
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
...++.|+.++.++++.++..|+++|+.+.. ..+++.|..++.++++.||..|.++|..+..
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999963 2368899999999999999999999998864
No 47
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.62 E-value=7.1e-15 Score=163.97 Aligned_cols=339 Identities=16% Similarity=0.087 Sum_probs=229.9
Q ss_pred HHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchh---------hHhh
Q 012413 99 DYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFST---------EIIE 168 (464)
Q Consensus 99 ~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~---------~i~~ 168 (464)
....|.++|.+ .+.+|..++..++.++..-.. +.+. + ++|.+ +..+...+... .+.+
T Consensus 91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-------~~wp--~-ll~~L---~~~l~~~~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 91 IKSECLNNIGDSSPLIRATVGILITTIASKGEL-------QNWP--D-LLPKL---CSLLDSEDYNTCEGAFGALQKICE 157 (852)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-------TTCT--T-HHHHH---HHHHSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-------cccH--H-HHHHH---HHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34455566777 888999999999998754210 1000 0 22222 34444332100 0111
Q ss_pred hcC--------CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 012413 169 SIS--------PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSV 240 (464)
Q Consensus 169 ~~~--------~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~ 240 (464)
... ...+...++.+++.++++++.+|..|+++|..+....+...... -.+.++.|+.++.+++++++..|+
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~~d~~~~vr~~a~ 236 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALAGDEEPEVRKNVC 236 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 111 12245678888888999999999999999988876544221111 125788888999999999999999
Q ss_pred HHHHHhcCCC-chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc--cCChHHHHHHh-------
Q 012413 241 TALLNLSLHE-NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA--CGAIPPLVSLL------- 310 (464)
Q Consensus 241 ~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Li~lL------- 310 (464)
++|..++... +.-.... .+.++.++.++++.++.++..|++++..++.....+..+.. ...+|.++..+
T Consensus 237 ~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 237 RALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp HHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 9999998742 2111111 24788888999999999999999999999876433332211 23456666666
Q ss_pred ----hc-----------CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhh
Q 012413 311 ----IY-----------GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEG 375 (464)
Q Consensus 311 ----~~-----------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 375 (464)
.+ .+..+++.|..+|..|+..... .++. ..++.+..++.+.+..++..|+++|++++.....
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence 23 2335799999999999873321 1222 3678888888888999999999999999964332
Q ss_pred HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 376 REAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 376 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
.-.-.-.++++.++.++.++++.+|..|+++|++++...........-.+.++.|+..+.++++.+|..|+++|.++++.
T Consensus 393 ~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 393 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 11112256789999999999999999999999999864221110111135678899999899999999999999999863
No 48
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.55 E-value=6.3e-14 Score=148.43 Aligned_cols=336 Identities=13% Similarity=0.096 Sum_probs=205.1
Q ss_pred hhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhh------
Q 012413 97 EDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIES------ 169 (464)
Q Consensus 97 e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~------ 169 (464)
++.++.|.++++| ++.+|..+.++++.++.......... .++|.+ ...+.+++ ..++..
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~---------~l~~~l---~~~~~d~~--~~vr~~a~~~l~ 228 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKS---------EIIPMF---SNLASDEQ--DSVRLLAVEACV 228 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHH---------THHHHH---HHHHTCSC--HHHHTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHH---------HHHHHH---HHHhcCCc--HHHHHHHHHHHH
Confidence 3445556667777 89999999999999987654321110 133333 34444333 222111
Q ss_pred -c----CCC-CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 012413 170 -I----SPE-DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTAL 243 (464)
Q Consensus 170 -~----~~~-~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL 243 (464)
+ ... .....++.+...++++++.+|..|+.+|..++..... .......++.++.+++++++++|..|+.+|
T Consensus 229 ~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 305 (588)
T 1b3u_A 229 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKV 305 (588)
T ss_dssp HHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 1 110 0123566667778889999999999999999864211 122346789999999999999999999999
Q ss_pred HHhcCCC--chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHH
Q 012413 244 LNLSLHE--NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDA 321 (464)
Q Consensus 244 ~~La~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A 321 (464)
..++..- +.+....-...+|.+..++++++..+|..++++|..++..-... ......+|.+..++.++++.+|..+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a 383 (588)
T 1b3u_A 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9998642 22222233567888999999999999999999999987542111 1112357888888888888888888
Q ss_pred HHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHH
Q 012413 322 LTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKE 401 (464)
Q Consensus 322 ~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 401 (464)
+.+|..++..-... . .....+|.|..++.+.+..++..++.+|..++..-.. .+.....++.++..+.+.+..+|.
T Consensus 384 ~~~l~~l~~~~~~~-~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 384 ISNLDCVNEVIGIR-Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp HTTCHHHHHHSCHH-H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHHHHHhcCHH-H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHH
Confidence 88887776521110 0 1122455555555555555666666666655421000 000112344445555555555555
Q ss_pred HHHHHHHHHhhc-C-----------------------------------HHhHHHHHHcCChHHHHHhhhcCCHHHHHHH
Q 012413 402 FAVLTLLQLCAE-S-----------------------------------VKNRGLLVREGGIPPLVALSQTGSVRAKHKA 445 (464)
Q Consensus 402 ~A~~aL~~L~~~-~-----------------------------------~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A 445 (464)
.|+.+|+.++.. . ........-...++.|+.++.+++++||..+
T Consensus 460 ~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a 539 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNV 539 (588)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHH
Confidence 555555554421 0 0111111223567777777777777888888
Q ss_pred HHHHHHhhcC
Q 012413 446 ETLLGYLREP 455 (464)
Q Consensus 446 ~~aL~~L~~~ 455 (464)
.++|+.+...
T Consensus 540 ~~~l~~l~~~ 549 (588)
T 1b3u_A 540 AKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHH
Confidence 8888777653
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.54 E-value=1.5e-13 Score=145.42 Aligned_cols=330 Identities=12% Similarity=0.032 Sum_probs=234.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCch---hhhhcCcccCcccccCCCchhhhhhhcccCch--------
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPE---NILRQPNENNCQAELEPEPEPCLGFLQRENFS-------- 163 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~---~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s-------- 163 (464)
.+..++.+.++++| .+.+|..++.+++.++...... ..+.+ .++..+++.+..
T Consensus 240 ~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~---------------~l~~~l~d~~~~vr~~a~~~ 304 (588)
T 1b3u_A 240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVP---------------AFQNLMKDCEAEVRAAASHK 304 (588)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHH---------------HHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHH---------------HHHHHhCCCcHHHHHHHHHH
Confidence 46677778888888 7889999999999998753221 11211 112222221100
Q ss_pred -hhHhhhcCCC-----CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 012413 164 -TEIIESISPE-----DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQE 237 (464)
Q Consensus 164 -~~i~~~~~~~-----~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~ 237 (464)
..+....... .....++.+...++++++.+|..++++|..++..-.. .......+|.+..+++++++++|.
T Consensus 305 l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~ 381 (588)
T 1b3u_A 305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRL 381 (588)
T ss_dssp HHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHH
Confidence 0111111111 1245677778888999999999999999888753211 111235788999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhh
Q 012413 238 HSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRG 317 (464)
Q Consensus 238 ~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v 317 (464)
.++.+|..+...-... ......+|.|..++++.+..+|..++.+|..++..-.. .......+|.++.+|.+.+..+
T Consensus 382 ~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~V 457 (588)
T 1b3u_A 382 NIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAI 457 (588)
T ss_dssp HHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHH
T ss_pred HHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHH
Confidence 9999998887532111 12235788999999999999999999999998754111 1122345788899999999999
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCH
Q 012413 318 KKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSV 397 (464)
Q Consensus 318 ~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 397 (464)
|..|+.+|+.++..-... ......+|.|+.++.+++..++..++.+++.++..-. ........++.|+.++.++++
T Consensus 458 r~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~ 533 (588)
T 1b3u_A 458 REAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVA 533 (588)
T ss_dssp HHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhCCCCCc
Confidence 999999999998732221 2234588899999888889999999999999985311 112335688999999999999
Q ss_pred HHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 398 KGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 398 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
.+|..++++|+.++..-.. .......++.|..++.+.+++||..|.++|..|.+
T Consensus 534 ~Vr~~a~~~l~~l~~~~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 534 NVRFNVAKSLQKIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHHHHHHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 9999999999999864211 12234567788888888899999999999998864
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.52 E-value=1.3e-13 Score=153.74 Aligned_cols=278 Identities=13% Similarity=0.079 Sum_probs=204.8
Q ss_pred CCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH----hcCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012413 172 PEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG----ESGAVPALVPLLKCSDPWTQEHSVTALLNLS 247 (464)
Q Consensus 172 ~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~----~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La 247 (464)
.+.|...++.|+..+.++++.+|..++.+|..++.+.+.....-. -...++.|+++++++++.+|..|+++|.++.
T Consensus 123 ~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 123 LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202 (852)
T ss_dssp TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTT
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999999876443211100 1246788888899999999999999999887
Q ss_pred CCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cc-hhhhhccCChHHHHHHhhcCChhhHHHHHHHH
Q 012413 248 LHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-EN-KSSIGACGAIPPLVSLLIYGSSRGKKDALTTL 325 (464)
Q Consensus 248 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~-~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL 325 (464)
........-.-.+.++.|+.++.++++.+|..++++|..++... +. +..+ .+.++.++.++.+.++.++..|+..+
T Consensus 203 ~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 203 ISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFW 280 (852)
T ss_dssp TTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 64322111111357888999999999999999999999998752 21 1111 24678888889999999999999999
Q ss_pred HHHhcCcchHHHHH--HcCCHHHHHHhh-----------cC-----------CCHHHHHHHHHHHHHHhCCHhhHHHHHh
Q 012413 326 YKLCSLKQNKERAV--SAGAVRPLVGML-----------AG-----------QGEGMAEKAMVVLSLLAGIAEGREAIVE 381 (464)
Q Consensus 326 ~nL~~~~~~~~~iv--~~g~v~~Lv~lL-----------~~-----------~~~~v~~~A~~aL~nLa~~~~~~~~i~~ 381 (464)
..++.....+..+. -...+|.++..+ .+ ....++..|+.+|..|+.... ..+.
T Consensus 281 ~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~- 357 (852)
T 4fdd_A 281 LTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL- 357 (852)
T ss_dssp HHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-
Confidence 99998654333221 123567777776 22 112357888899998884321 1111
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
...++.+.+++.+++..+|..|+++|++++......-.. .-.++++.|+.++.++++.||..|+|+|+.+++.
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 246778888888899999999999999999776532111 1246789999999999999999999999998873
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.43 E-value=4.1e-12 Score=130.33 Aligned_cols=275 Identities=13% Similarity=0.098 Sum_probs=195.9
Q ss_pred CchHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhcC
Q 012413 174 DLQPTVKICIDGLQSS--SVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKCS--DPWTQEHSVTALLNLSL 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~--~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~~--~~~v~~~A~~aL~~La~ 248 (464)
.|...++.|+..+.++ ++.+|..|+.+|..++.+. +..-.... ...++.++.+|+++ ++.+|..|+.+++++..
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567888889999888 9999999999999998753 22111111 24778888999887 79999999999999764
Q ss_pred CCc-hH-HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc--chhhhhccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 249 HEN-NK-TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE--NKSSIGACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 249 ~~~-~~-~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~--~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
.-. .. ......-.++.|..++.+++..++..++++|..++.... .+..+ ..+.++.++..+.+.+..++..|+..
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEF 282 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 211 10 001111146677777888899999999999999886521 11211 12667888888888899999999999
Q ss_pred HHHHhcCcchH------------------HHHHH---cCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHhCCHhhH
Q 012413 325 LYKLCSLKQNK------------------ERAVS---AGAVRPLVGMLAGQ-------GEGMAEKAMVVLSLLAGIAEGR 376 (464)
Q Consensus 325 L~nL~~~~~~~------------------~~iv~---~g~v~~Lv~lL~~~-------~~~v~~~A~~aL~nLa~~~~~~ 376 (464)
+..++...... ..+++ ...+|.++..+.+. +..++..|+.+|..|+..-.
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-- 360 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-- 360 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--
Confidence 99987643100 00111 33667777777532 23578899999999984221
Q ss_pred HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-H-hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 377 EAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-K-NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 377 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~-~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..+. ..+++.+.+.+.+.+..+|..|+.+|+.++.... . ....+ ..+++.|+..+.++++.||..|+|+|+.+++
T Consensus 361 ~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 361 DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1222 2467777788888999999999999999996432 1 11111 4678999999999999999999999999987
Q ss_pred C
Q 012413 455 P 455 (464)
Q Consensus 455 ~ 455 (464)
.
T Consensus 438 ~ 438 (462)
T 1ibr_B 438 L 438 (462)
T ss_dssp H
T ss_pred h
Confidence 4
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.42 E-value=1.7e-11 Score=131.44 Aligned_cols=327 Identities=16% Similarity=0.089 Sum_probs=214.6
Q ss_pred hhHHHHHHhhhhh-cccchhhhHHHHHHhhcC-CCchhhhhcCcccCcccccCCCchhhhhhhcccCc-----hhhHhhh
Q 012413 97 EDDYLNVSQAFSD-FSVCSSDISGELQRLASL-PSPENILRQPNENNCQAELEPEPEPCLGFLQRENF-----STEIIES 169 (464)
Q Consensus 97 e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~-~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~-----s~~i~~~ 169 (464)
.+.+..+.+++.+ +..+|+-+..++..++.. ++..-- ....+...|+..+. .-..+..
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l---------------~~n~l~kdL~~~n~~ir~~AL~~L~~ 112 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIM---------------AVNSFVKDCEDPNPLIRALAVRTMGC 112 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHT---------------THHHHGGGSSSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHH---------------HHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 4566777888887 778888888888877653 111100 01111222222221 0111111
Q ss_pred cCC-CCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 170 ISP-EDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 170 ~~~-~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
+.. ......++.+.++|.++++.||..|+.+|..+...+++. +.+.+.++.|..+|.++++.++..|+.+|+.++.
T Consensus 113 i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 113 IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp CCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 221 223456777889999999999999999999998876653 2345789999999999999999999999999987
Q ss_pred CCc-hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhhcCChhhHHHHHHHHH
Q 012413 249 HEN-NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 249 ~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~ 326 (464)
+.. ........+.++.|+..+.+.++-.+...+.+|..++..++ .. ...++.+..+|.+.++.|+..|++++.
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~ 264 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLM 264 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHH
T ss_pred hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 532 21011123457788888888999999999999988875422 11 235778888889999999999999999
Q ss_pred HHhc----CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHh------------------h-HHHH---
Q 012413 327 KLCS----LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAE------------------G-REAI--- 379 (464)
Q Consensus 327 nL~~----~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~------------------~-~~~i--- 379 (464)
.+.. +++....++ ..+.+.|+.++. .++.++..|+.+|..++. .+. . +..+
T Consensus 265 ~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L 342 (591)
T 2vgl_B 265 KFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM 342 (591)
T ss_dssp HSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred HHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence 9974 234433333 336677776664 678888888888888863 110 0 1111
Q ss_pred H---hcC----cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 380 V---EEN----GIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 380 ~---~~g----~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
. ... .++.|.+++.+.+.+++..++++|+.++..-+.... ..++.|++++......++..+..+++.+
T Consensus 343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 1 122 456677777788999999999999999976543221 2345555555555555555555555554
Q ss_pred h
Q 012413 453 R 453 (464)
Q Consensus 453 ~ 453 (464)
.
T Consensus 418 i 418 (591)
T 2vgl_B 418 F 418 (591)
T ss_dssp H
T ss_pred H
Confidence 3
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.39 E-value=7.9e-12 Score=133.97 Aligned_cols=263 Identities=16% Similarity=0.152 Sum_probs=191.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
+.++.+..+|.++++.|+..|+.+|..++.+++..+......+.+..|+..+.+.+++.+...+.+|..++..++..
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~--- 236 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE--- 236 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH---
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH---
Confidence 47788899999999999999999999999886643211112345777888888899999999999998887543211
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc----ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-C
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALI----EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-L 331 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~----~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~ 331 (464)
....++.+..+|++.++.++..|++++..+... ++....+ -....+.|+.++. .++.+|..|+.+|..+.. +
T Consensus 237 -~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 237 -AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp -HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhC
Confidence 134678888889999999999999999998742 2322222 1234567776654 677888888888887765 2
Q ss_pred cch-------------------HHH---H---HHc----CCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhHHHHHh
Q 012413 332 KQN-------------------KER---A---VSA----GAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGREAIVE 381 (464)
Q Consensus 332 ~~~-------------------~~~---i---v~~----g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~ 381 (464)
++. +.. + ... ..++.|..++.+.+.+++..++++|+.++. ++...
T Consensus 314 p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~----- 388 (591)
T 2vgl_B 314 PEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA----- 388 (591)
T ss_dssp CSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----
T ss_pred hHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----
Confidence 211 011 0 111 245566677778889999999999999994 44322
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcC
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~~ 455 (464)
...++.|++++.+....++..++.++.++....+.. ...+++.|.+.+.+ ..+.++..+.|+|+..+..
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~ 458 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAER 458 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHccccc
Confidence 346789999999999999999999999987654432 25678899998875 4688999999999887654
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.28 E-value=1.9e-10 Score=123.83 Aligned_cols=221 Identities=16% Similarity=0.080 Sum_probs=159.5
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNKT 254 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~~ 254 (464)
+..++.+.++|.+.++.||..|+.++..+...+++.. .+.++.+..+|.+.++.++..|+.+|..++.+. +...
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3567777889999999999999999999998766532 268888999999999999999999999998753 2212
Q ss_pred HHHhcCcHHHHHHHHcc---------------CCHHHHHHHHHHHHHhcccc-cchhh----------------------
Q 012413 255 LITNAGAIKSLVYVLKT---------------GTETSKQNAACALMSLALIE-ENKSS---------------------- 296 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~---------------~~~~v~~~a~~aL~~Ls~~~-~~~~~---------------------- 296 (464)
.+ ...+|.|+.+|.+ .++-++...+.+|..++..+ +....
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 22 2467777776653 36667776777776665431 11000
Q ss_pred -------hh--------ccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHH
Q 012413 297 -------IG--------ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEK 361 (464)
Q Consensus 297 -------i~--------~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~ 361 (464)
+. ...+++.|..+|.+.++.+|..|+.+|..++.... .++ ....+.++.++.+++..++..
T Consensus 294 ~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 294 LYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHHHHHHHHccCCChhHHHH
Confidence 00 01246677777888888888888888888876322 122 225677888888888999999
Q ss_pred HHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 362 AMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 362 A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
|+.+|..|+..... . ..+..|+.++.+.+.+++..++.+|+.++..
T Consensus 370 alelL~~l~~~~nv-~-----~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 370 AMELSFALVNGNNI-R-----GMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHCCSSST-H-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcccccH-H-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999998863321 1 1457788888888899999999999998863
No 55
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.22 E-value=8.5e-11 Score=128.07 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=154.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHH-HHHHccCCHHHHHHHHHHHHHhccc--ccchh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSL-VYVLKTGTETSKQNAACALMSLALI--EENKS 295 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~L-v~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~ 295 (464)
+.|.++++.|+++++..|..||++|.+|+.++..++.+...|+|..+ ..+|.+++.++|.+|+++|.||+.+ .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 45667888899999999999999999999988999999999998775 5578999999999999999999976 46788
Q ss_pred hhhccCChHHHHHHhhcCC---------------------hhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcC
Q 012413 296 SIGACGAIPPLVSLLIYGS---------------------SRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAG 353 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL~~~~---------------------~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~ 353 (464)
.++..|++++|..+|.... ..+..+++.+|++||. +.+....+...++++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999999986421 1234467889999998 55677788889999999999843
Q ss_pred ---CCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCc---HHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 354 ---QGEGMAEKAMVVLSLLA-GIAEGREAIVEENG---IAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 354 ---~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
...+++..|+.+|+.++ .+++..+.+.+.+. ...++.+. ..+...+..++++|.|+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHhh
Confidence 34678999999999999 56777888887663 33333333 3444567788999999853
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.17 E-value=7e-10 Score=123.04 Aligned_cols=276 Identities=14% Similarity=0.114 Sum_probs=195.7
Q ss_pred CCchHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhccCchhHHHHH--hcCChHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 012413 173 EDLQPTVKICIDGLQSS--SVAIKRSAAAKLRLLAKNRSDNRVLIG--ESGAVPALVPLLKCS--DPWTQEHSVTALLNL 246 (464)
Q Consensus 173 ~~~~~~v~~Lv~~L~s~--~~~vr~~A~~~L~~La~~~~~~r~~i~--~~g~i~~Ll~lL~~~--~~~v~~~A~~aL~~L 246 (464)
..|...++.++..+.++ ++.+|..++.+|..++..-.. ..+. -...++.+...+.++ ++.+|..|+.+|.++
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999998 999999999999999865211 1111 134677788888876 689999999999998
Q ss_pred cCC-Cch-HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHH
Q 012413 247 SLH-ENN-KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALT 323 (464)
Q Consensus 247 a~~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~ 323 (464)
... ... .........++.+..++.+++.+++..++.+|..+... ++.-........++.++..+.+.+..++..++.
T Consensus 202 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~ 281 (876)
T 1qgr_A 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281 (876)
T ss_dssp GGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 753 111 00111123577778888888999999999999998764 222111222366888888888888999999999
Q ss_pred HHHHHhcCcch----------------------HHHHHHcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHHhCCHh
Q 012413 324 TLYKLCSLKQN----------------------KERAVSAGAVRPLVGMLAG-------QGEGMAEKAMVVLSLLAGIAE 374 (464)
Q Consensus 324 aL~nL~~~~~~----------------------~~~iv~~g~v~~Lv~lL~~-------~~~~v~~~A~~aL~nLa~~~~ 374 (464)
.+..++..... ....+ ...++.++..+.. .+..++..|+.+|..++..-.
T Consensus 282 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~ 360 (876)
T 1qgr_A 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc
Confidence 99988764210 00011 2356777777752 234678888999998884321
Q ss_pred hHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 012413 375 GREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 375 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~ 453 (464)
..++ ...++.+...+.+.+..+|..|+++|+.++.... ..-.... ...++.|+..+.++++.||..|+|+|+.++
T Consensus 361 --~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 361 --DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp --GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred --HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1111 2456667777788899999999999999997542 2211211 347899999999999999999999999998
Q ss_pred cC
Q 012413 454 EP 455 (464)
Q Consensus 454 ~~ 455 (464)
+.
T Consensus 437 ~~ 438 (876)
T 1qgr_A 437 EL 438 (876)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.17 E-value=2e-09 Score=119.10 Aligned_cols=276 Identities=13% Similarity=0.136 Sum_probs=191.9
Q ss_pred CchHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCchh-H--HHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhc
Q 012413 174 DLQPTVKICIDGLQSS-SVAIKRSAAAKLRLLAKNRSDN-R--VLIGESGAVPALVPLLKCS--DPWTQEHSVTALLNLS 247 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~-~~~vr~~A~~~L~~La~~~~~~-r--~~i~~~g~i~~Ll~lL~~~--~~~v~~~A~~aL~~La 247 (464)
.|...++.|+..+.++ ++.+|..++.+|..++..-... + ... ....++.+...+.++ ++.+|..|+.+|..+.
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 4577888899999988 9999999999999998753211 0 011 123567777788886 8999999999999875
Q ss_pred CC-Cch-HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 248 LH-ENN-KTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 248 ~~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
.. .+. .........++.|...+.+++..+|..++.+|..++... +.-........++.++..+.+.+..++..++.+
T Consensus 210 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 210 IFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 32 111 000011235677778888899999999999999987642 211111111456677778888899999999999
Q ss_pred HHHHhcCcch------------------HHHHHHcCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHhCCHhhHHHH
Q 012413 325 LYKLCSLKQN------------------KERAVSAGAVRPLVGMLAGQ-------GEGMAEKAMVVLSLLAGIAEGREAI 379 (464)
Q Consensus 325 L~nL~~~~~~------------------~~~iv~~g~v~~Lv~lL~~~-------~~~v~~~A~~aL~nLa~~~~~~~~i 379 (464)
+..++..... ...++ ...+|.++..+... +..++..+..+|..++..-. ..+
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~ 366 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHI 366 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGG
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhH
Confidence 9998774311 11122 34778888888642 24678889999998885211 011
Q ss_pred HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 380 VEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESV-KNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 380 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+ ...++.+.+.+.+.+..+|..|+++|+.++.... ..-.... ..+++.|+..+.++++.+|..++|+|+.+++.
T Consensus 367 ~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 367 L-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 1 1345666667778889999999999999996532 2211122 24788999999999999999999999998864
No 58
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.17 E-value=5.1e-10 Score=124.19 Aligned_cols=274 Identities=13% Similarity=0.062 Sum_probs=194.0
Q ss_pred chHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhccCchhH-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-C
Q 012413 175 LQPTVKICIDGLQSS--SVAIKRSAAAKLRLLAKNRSDNR-VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-E 250 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~--~~~vr~~A~~~L~~La~~~~~~r-~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~ 250 (464)
....++.+...+.++ +..+|..|+++|..+...-...- ........++.+...+.+.+++++..++.+|..++.. +
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH
Confidence 345677778888876 78999999999998875422110 0001113577778888888999999999999999863 3
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccc----------------h---hhhh--ccCChHHHHHH
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEEN----------------K---SSIG--ACGAIPPLVSL 309 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~----------------~---~~i~--~~g~i~~Li~l 309 (464)
+.-........++.++..+.+.++.++..++.++..++..... + ..+. -...+|.+++.
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence 3222333346888999989899999999999999888754200 0 0000 02345667777
Q ss_pred hhc-------CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH--hhHHHHH
Q 012413 310 LIY-------GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA--EGREAIV 380 (464)
Q Consensus 310 L~~-------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~--~~~~~i~ 380 (464)
|.. .+..+|+.|..+|..++..-.. .++. ..++.+...+.+.+..++..|+.+|+.++... +......
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 752 3567999999999998773221 1222 36677778888888999999999999999542 2222222
Q ss_pred hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh---HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 381 EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN---RGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 381 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
...++.++..+.++++.+|..|+++|++++...+.. ...+ ..+++.|+..+.++ +.++..|+++|..+.+.
T Consensus 407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999753321 1111 24577888888775 99999999999999864
No 59
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.17 E-value=2.2e-10 Score=124.84 Aligned_cols=194 Identities=15% Similarity=0.069 Sum_probs=156.9
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHH-HHhhcCChhhHHHHHHHHHHHhcC--cchHH
Q 012413 260 GAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLV-SLLIYGSSRGKKDALTTLYKLCSL--KQNKE 336 (464)
Q Consensus 260 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li-~lL~~~~~~v~~~A~~aL~nL~~~--~~~~~ 336 (464)
..|.++++.|+++++..|..||++|.+|+.++..+..+...|+|..++ .+|.+.+..|+..|+++|+||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 356667788999999999999999999999888899999999988765 578889999999999999999974 57888
Q ss_pred HHHHcCCHHHHHHhhcCCC---------------------HHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhc
Q 012413 337 RAVSAGAVRPLVGMLAGQG---------------------EGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~---------------------~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
.+++.|++++|..++.... .++..+++.+|.+|| .+......+...++++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 9999999999999885311 123456888999999 566777788889999999999964
Q ss_pred ---CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhh--hcCCHHHHHHHHHHHHHhh
Q 012413 395 ---GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALS--QTGSVRAKHKAETLLGYLR 453 (464)
Q Consensus 395 ---~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL--~s~~~~v~~~A~~aL~~L~ 453 (464)
....++..|+.+|..++..++.....+.+.|....+.-++ ...+...+..+++.|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 3478999999999999999998888888876543333222 3344456778889998874
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.15 E-value=7.1e-10 Score=119.42 Aligned_cols=253 Identities=13% Similarity=0.077 Sum_probs=168.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC-CCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL-HENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~ 255 (464)
-++..+.+-|+++++.+|..|+++|+++... + +. ...++.+..+|++.++.+|..|+.++.++.. +++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~-~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-- 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----E-MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-- 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----H-HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----H-HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence 4777888899999999999999999999843 1 22 3578889999999999999999999999986 34422
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhc---------------CChhhHH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIY---------------GSSRGKK 319 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~---------------~~~~v~~ 319 (464)
.+.++.+..+|.+.++.++..|+++|..++.+. +....+ ...+|.++.+|.+ .++-.+.
T Consensus 178 ---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 178 ---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp ---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred ---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 267888889999999999999999999998763 221122 2567888887764 3677788
Q ss_pred HHHHHHHHHhcCcch-HHHHHH-------------------------------------cCCHHHHHHhhcCCCHHHHHH
Q 012413 320 DALTTLYKLCSLKQN-KERAVS-------------------------------------AGAVRPLVGMLAGQGEGMAEK 361 (464)
Q Consensus 320 ~A~~aL~nL~~~~~~-~~~iv~-------------------------------------~g~v~~Lv~lL~~~~~~v~~~ 361 (464)
..+.+|+.++..+.. ...+.+ ..++..|..++.+.++.++..
T Consensus 253 ~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~ 332 (618)
T 1w63_A 253 RILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYV 332 (618)
T ss_dssp HHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 888888888874321 111000 013444555555555555555
Q ss_pred HHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHH
Q 012413 362 AMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRA 441 (464)
Q Consensus 362 A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v 441 (464)
|+.+|..++.... .++ ......++.++.+++..+|..|+.+|..++.... -. .+++.|...+.+.+.++
T Consensus 333 aL~~L~~i~~~~p---~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~-----~iv~eL~~~l~~~d~e~ 401 (618)
T 1w63_A 333 ALTSLLKTVQTDH---NAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IR-----GMMKELLYFLDSCEPEF 401 (618)
T ss_dssp HHHHHHHHHHHHH---HHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--TH-----HHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHhhCH---HHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HH-----HHHHHHHHHHHhCCHHH
Confidence 5555555553211 111 1234556666666666666666666666664321 11 13566666666666777
Q ss_pred HHHHHHHHHHhhc
Q 012413 442 KHKAETLLGYLRE 454 (464)
Q Consensus 442 ~~~A~~aL~~L~~ 454 (464)
|..+..+|+.++.
T Consensus 402 r~~~v~~I~~la~ 414 (618)
T 1w63_A 402 KADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777765
No 61
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.15 E-value=3.1e-10 Score=125.70 Aligned_cols=270 Identities=12% Similarity=0.076 Sum_probs=186.1
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchh--HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC---
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDN--RVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE--- 250 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~--r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~--- 250 (464)
...++.++..+.++++.+|..++++|+.++..-... .... -...++.|+..++++ +.++..|+++|.+++..-
T Consensus 410 ~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~ 487 (861)
T 2bpt_A 410 HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccc
Confidence 457788888999999999999999999888642110 0001 124678888888776 999999999999987531
Q ss_pred --c-hHHHHHhcCcHHHHHHHHccCC--HHHHHHHHHHHHHhcccccch-hhhhccCChHHHHHHhhcC-----------
Q 012413 251 --N-NKTLITNAGAIKSLVYVLKTGT--ETSKQNAACALMSLALIEENK-SSIGACGAIPPLVSLLIYG----------- 313 (464)
Q Consensus 251 --~-~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~~Ls~~~~~~-~~i~~~g~i~~Li~lL~~~----------- 313 (464)
+ ....+ ...++.|+.++.+.+ ..+|..++.+|..+....... .... ...+|.+++.+...
T Consensus 488 ~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~ 564 (861)
T 2bpt_A 488 TPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLE 564 (861)
T ss_dssp SSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHH
T ss_pred cchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChh
Confidence 1 11111 235778888887543 789999999999988653211 1111 23566777776532
Q ss_pred ----ChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCH-HHHHHHHHHHHHHhCCH--hhHHHHHhcCcH
Q 012413 314 ----SSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGE-GMAEKAMVVLSLLAGIA--EGREAIVEENGI 385 (464)
Q Consensus 314 ----~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~-~v~~~A~~aL~nLa~~~--~~~~~i~~~g~i 385 (464)
...++..++.+|.+++.. +....... ...++.++..+.+.+. .+++.++.+++.++... .....+ ...+
T Consensus 565 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~ 641 (861)
T 2bpt_A 565 DAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFS 641 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHH
Confidence 345778899999998873 32211112 2367788888887766 88999999999998432 222222 2378
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHcCChHHHHHhhhcCC--HHHHHHHHHHHHHhhcC
Q 012413 386 AALVEAIEDGSVKGKEFAVLTLLQLCAESVKN-RGLLVREGGIPPLVALSQTGS--VRAKHKAETLLGYLREP 455 (464)
Q Consensus 386 ~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~--~~v~~~A~~aL~~L~~~ 455 (464)
+.|+..+.+.+..++..|+.+++.++...... ...+ ...++.|+..+.+++ +.+|..+..+++.+...
T Consensus 642 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 642 PYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 88999998888899999999999998643221 1111 346777888888764 78999999999888753
No 62
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.09 E-value=1.2e-09 Score=111.70 Aligned_cols=234 Identities=13% Similarity=0.082 Sum_probs=164.0
Q ss_pred hHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhccCchhH-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-Cc
Q 012413 176 QPTVKICIDGLQSS--SVAIKRSAAAKLRLLAKNRSDNR-VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-EN 251 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~--~~~vr~~A~~~L~~La~~~~~~r-~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~ 251 (464)
...++.++..|+++ ++.+|..|++++..+...-.... ......-.++.|...+.+.+++++..++.+|..++.. ++
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45777888889887 79999999999988653211110 0001111466677778889999999999999999863 22
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc------------------chhhhhc---cCChHHHHHHh
Q 012413 252 NKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE------------------NKSSIGA---CGAIPPLVSLL 310 (464)
Q Consensus 252 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~------------------~~~~i~~---~g~i~~Li~lL 310 (464)
.-......+.++.++..+++.++.++..+++++..++.... ....+.+ ...+|.+++.+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 11111112678888888999999999999999998875420 0000111 23456666666
Q ss_pred hc-------CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHh--hHHHHHh
Q 012413 311 IY-------GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAE--GREAIVE 381 (464)
Q Consensus 311 ~~-------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~--~~~~i~~ 381 (464)
.. .+..+|..|+.+|..|+..-.. .++ ...++.+...+.+.+..++..|+.+|+.++.... ..... -
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l 406 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V 406 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-T
T ss_pred HhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-H
Confidence 43 2457899999999999873221 222 2467788888888899999999999999995321 11111 1
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
..+++.++.++.++++.+|..|+++|++++..
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999964
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.02 E-value=4.7e-09 Score=121.42 Aligned_cols=340 Identities=12% Similarity=0.073 Sum_probs=219.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchh---------h
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFST---------E 165 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~---------~ 165 (464)
.+..+..|.+.+.| ++.+|..+..+|+.++..... . . +...+..++..+.+++... .
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~-~-----------~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~ 112 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-Y-Q-----------VETIVDTLCTNMLSDKEQLRDISSIGLKT 112 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-H-H-----------HHHHHHHHHHHTTCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-H-H-----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 34667778888888 888999999999998764322 0 0 1111122244443332110 1
Q ss_pred HhhhcCCC---------CchHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHH
Q 012413 166 IIESISPE---------DLQPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWT 235 (464)
Q Consensus 166 i~~~~~~~---------~~~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v 235 (464)
+...+... .+...++.|+..+. ++++.++..|+.+|..++...+..-... -...++.|+..|.++++.+
T Consensus 113 i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-~~~ll~~l~~~L~~~~~~v 191 (1230)
T 1u6g_C 113 VIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAV 191 (1230)
T ss_dssp HHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHH
T ss_pred HHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHHcCCcHHH
Confidence 22222222 25678899999998 5889999999999999885432211111 1346777888899999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhcccccchhhhh--ccCChHHHHHHhhc
Q 012413 236 QEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGT-ETSKQNAACALMSLALIEENKSSIG--ACGAIPPLVSLLIY 312 (464)
Q Consensus 236 ~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~Ls~~~~~~~~i~--~~g~i~~Li~lL~~ 312 (464)
|..|+.+|+.++...... + -...++.|+..|...+ ..++..++.++..++..... .+. -...+|.++..+.+
T Consensus 192 R~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d 266 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV 266 (1230)
T ss_dssp HHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcC
Confidence 999999999998753221 1 2346888888887653 46777888888888754211 121 14678999999999
Q ss_pred CChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCC-------------------------------------
Q 012413 313 GSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQ------------------------------------- 354 (464)
Q Consensus 313 ~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~------------------------------------- 354 (464)
.++.+|..++.++..++.. ++....++ ...++.++..+..+
T Consensus 267 ~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 345 (1230)
T 1u6g_C 267 DDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345 (1230)
T ss_dssp CCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------------------------------C
T ss_pred CCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccccccc
Confidence 9999999999999999873 32211122 12445554444210
Q ss_pred CHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH----------------h
Q 012413 355 GEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK----------------N 417 (464)
Q Consensus 355 ~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~----------------~ 417 (464)
...++..|+.+|..++.. ++.-..+. ...++.++..+.+.+..+|..++.++..++..... .
T Consensus 346 ~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 346 SWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp TTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred CHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch
Confidence 123577888999988853 22122222 45678888888888999999999999888742100 0
Q ss_pred HHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 012413 418 RGLLVR--EGGIPPLVALSQTGSVRAKHKAETLLGYLREPR 456 (464)
Q Consensus 418 ~~~i~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~ 456 (464)
...+.. ...++.+...+++.++.+|..+..+|+.+.+..
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 011111 234566666688899999999999999888753
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.94 E-value=1e-07 Score=102.60 Aligned_cols=256 Identities=14% Similarity=0.091 Sum_probs=183.4
Q ss_pred hHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 176 QPTVKICIDGL--QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L--~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
+..++.+.++| .+.++.||+.|+.++..+...+++. +...+.++.|..+|.+.++.++..|+.+|..++.+...
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~- 220 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE- 220 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH-
Confidence 35666667888 8899999999999999999876643 22258899999999999999999999999999864321
Q ss_pred HHHHhcCcHHHHHHHHc----cC-------------CHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHh----
Q 012413 254 TLITNAGAIKSLVYVLK----TG-------------TETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLL---- 310 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~----~~-------------~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL---- 310 (464)
.+ ...+|.++..|. .+ ++-++...+..|..++.. ++.+..+.+ .++.++..+
T Consensus 221 -~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ 295 (621)
T 2vgl_A 221 -EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP 295 (621)
T ss_dssp -HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred -HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence 11 134555554443 22 678999999998888753 233333322 233333322
Q ss_pred -----hcCCh--hhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcC
Q 012413 311 -----IYGSS--RGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEEN 383 (464)
Q Consensus 311 -----~~~~~--~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g 383 (464)
.+.+. .+...++.++..+...++... .++..|..+|.+.+++++.-|+.+|..++........+ ..
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~ 368 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KT 368 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HT
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HH
Confidence 12233 778888888888864333222 26678889998889999999999999999643222222 24
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
....++.+++ +++..++..|+..|..++.. .+... ++..|...+...+.+.+..+..+++.++.
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5778888998 99999999999999999853 33333 46678888888899999999999998874
No 65
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.93 E-value=2.6e-09 Score=123.53 Aligned_cols=271 Identities=11% Similarity=0.031 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
..+..|+..+.++|+++|..|...|.+..+.....-..-.....++.|+..|.+.++.+|..|+.+|+.++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~- 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ- 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH-
Confidence 4677888899999999999999999877654211100011225678899999999999999999999999874322 11
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccch------hhhhccCChHHHHHHhh-cCChhhHHHHHHHHHHHh
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENK------SSIGACGAIPPLVSLLI-YGSSRGKKDALTTLYKLC 329 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~------~~i~~~g~i~~Li~lL~-~~~~~v~~~A~~aL~nL~ 329 (464)
-...++.|+..|.++++.+|..++.+|..++..-... ..-.....+|.|+..+. +++..++..|+.+|..++
T Consensus 84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1236778888888999999999999999987542111 11122456889999998 478899999999999998
Q ss_pred cC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCC-HHHHHHHHHHH
Q 012413 330 SL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGS-VKGKEFAVLTL 407 (464)
Q Consensus 330 ~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL 407 (464)
.. ++...... ...++.|+..|.+++..++..|+.+|+.++..... .+ -...++.|++.+.+.+ ..++..++.++
T Consensus 163 ~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 163 SRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 52 22111111 23667788888888899999999999999954321 11 2356888998887543 46778889999
Q ss_pred HHHhhcCHHhHHHHHH--cCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCC
Q 012413 408 LQLCAESVKNRGLLVR--EGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQ 457 (464)
Q Consensus 408 ~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~ 457 (464)
+.++...+. .+.. ...++.++..+.+.++++|..+.+++..+.+.-+
T Consensus 239 ~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 239 AAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 998864322 1111 4678899999998899999999999999887543
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.81 E-value=1.1e-07 Score=102.20 Aligned_cols=216 Identities=15% Similarity=0.164 Sum_probs=153.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc----C---C----------CHHHHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK----C---S----------DPWTQEHS 239 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~----~---~----------~~~v~~~A 239 (464)
..++.+.++|.+.++.|+..|+.+|..++.+++.. + ...+|.++..|. . + +|+.+...
T Consensus 187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 46667788899999999999999999999876542 1 134454444332 2 1 79999999
Q ss_pred HHHHHHhcCCC--chHHHHHhcCcHHHHHHHHc---------cCCH--HHHHHHHHHHHHhcccccchhhhhccCChHHH
Q 012413 240 VTALLNLSLHE--NNKTLITNAGAIKSLVYVLK---------TGTE--TSKQNAACALMSLALIEENKSSIGACGAIPPL 306 (464)
Q Consensus 240 ~~aL~~La~~~--~~~~~i~~~g~i~~Lv~lL~---------~~~~--~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L 306 (464)
+..|..++..+ +.+..+.+ .++.++..+. +.+. .+...++.++..+...++... .++..|
T Consensus 262 l~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L 334 (621)
T 2vgl_A 262 LRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQL 334 (621)
T ss_dssp HHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHH
Confidence 99999988642 33333333 3444443321 2233 888899999999864333222 357788
Q ss_pred HHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcH
Q 012413 307 VSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLA-GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGI 385 (464)
Q Consensus 307 i~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i 385 (464)
..+|.+.++.+|..++.+|..++...+... ++ ....+.++..|. +++..++..++.+|..|+.. .+.. ..+
T Consensus 335 ~~~L~~~~~niry~aL~~l~~l~~~~~~~~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~-----~Iv 406 (621)
T 2vgl_A 335 GQFLQHRETNLRYLALESMCTLASSEFSHE-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQ-----QIV 406 (621)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHTTCTTTHH-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHH-----HHH
T ss_pred HHHhcCCCcchHHHHHHHHHHHHhccCcHH-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHH-----HHH
Confidence 899988899999999999999988543222 23 236778888888 89999999999999999853 2322 345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 386 AALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 386 ~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
..|.+++.+.+.+.+..++.+++.++.
T Consensus 407 ~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 407 AEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888874
No 67
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.80 E-value=4e-10 Score=96.28 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=92.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.+.++.++..|+++++.+|..|+++|..+.. ..++.|+.+|+++++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 4567777888999999999999988865432 237899999999999999999999988762
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
..+++.|+.+|+++++.+|..|+++|..+. +..+++.|+.+|.++++.++..|+.+|.+
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 236899999999999999999999999873 34468999999998899999999998865
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.77 E-value=1.2e-09 Score=93.37 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=96.8
Q ss_pred ccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHH
Q 012413 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREA 378 (464)
Q Consensus 299 ~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 378 (464)
....++.|+.+|.++++.+|..|+++|+.+.. ..++.|+.+|.++++.++..|+++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 35678899999999999999999999886532 136899999999999999999999998874
Q ss_pred HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 379 IVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
...++.|+.++.++++.+|..|+++|+.+.. ..+++.|+.+++++++.||..|.++|+.|
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3468999999999999999999999999973 23588999999999999999999999764
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=5.4e-08 Score=91.72 Aligned_cols=181 Identities=12% Similarity=0.033 Sum_probs=138.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCCC-chHHHHHhc
Q 012413 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLHE-NNKTLITNA 259 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~ 259 (464)
+.+.+.+.++..|..|+..|..+....+...... -...++.|..++. +.+..++..|+.+|+.|+..- ..-.. .-.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~~ 97 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YAS 97 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HHH
Confidence 5677889999999999999999887633211100 0245777888894 899999999999999999632 11111 123
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-C-cc-hHH
Q 012413 260 GAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-L-KQ-NKE 336 (464)
Q Consensus 260 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~-~~-~~~ 336 (464)
..+|.|+..+.+.+..+|..++.+|..+...... ...++.+...|.+.++.+|..++..|..+.. + ++ ...
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 3789999999999999999999999998764321 1247888888999999999999999999654 3 22 112
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
..+. ..+|.|+.+|.+....+|..|..+|+.|+.
T Consensus 172 ~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 172 KLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2233 488999999999999999999999998884
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.75 E-value=8.6e-07 Score=97.84 Aligned_cols=241 Identities=15% Similarity=0.098 Sum_probs=176.1
Q ss_pred HHHHHHHHhcCCCC--------HHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 012413 177 PTVKICIDGLQSSS--------VAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSL 248 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~--------~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~ 248 (464)
+++..|...|.+.+ +.+|..|+..|+.+..++. +..+++.|.++|.+++..++..|+.+|+.+-.
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 46677777776554 6788889989987654422 12457789999988888888899999987743
Q ss_pred CCchHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHH
Q 012413 249 HENNKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLY 326 (464)
Q Consensus 249 ~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~ 326 (464)
...+. .++..|+..+ .+.+..++..++.+|+.+.. .+...++.+++.|.. .++-+|..++.+++
T Consensus 502 GTgn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~alg 567 (963)
T 4ady_A 502 GTGKP------EAIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIA 567 (963)
T ss_dssp TCCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ccCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33222 2455566654 45688999999999998743 445578899998875 58888888888887
Q ss_pred HHhcCcchHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH-hcCCHHHHHHHH
Q 012413 327 KLCSLKQNKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI-EDGSVKGKEFAV 404 (464)
Q Consensus 327 nL~~~~~~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~ 404 (464)
--.....+.. +++.|+..+ .+.+..++..|+.+|+.++..++ ..++.++.++ ++.++.+|..|+
T Consensus 568 lAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAa 633 (963)
T 4ady_A 568 LAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTA 633 (963)
T ss_dssp HHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHH
T ss_pred HHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHH
Confidence 6555444422 455555554 45678899999999999874321 3567777755 468999999999
Q ss_pred HHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 012413 405 LTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQEG 459 (464)
Q Consensus 405 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~~ 459 (464)
.+|+.++..++. ..++..|..++++.++.|+..|..+|+.+.....+.
T Consensus 634 lALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 634 FALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 999999976532 225778888999999999999999999998765544
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.75 E-value=7.1e-07 Score=82.31 Aligned_cols=220 Identities=13% Similarity=0.090 Sum_probs=160.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-NRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~ 253 (464)
...+..|+..|.+.|+.++..++.+|..+-+.-+. .+.... ...++.++.++++.+..+...|..+|..|..+ +-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 45778889999999999999999999999887433 333333 47899999999999999999999999999875 4333
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
..+.. .+..|..+++++++-++.+++..|..|...... .+.+..+..++.+.+.+++..++.+|.+++...+
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 33333 567788899999999999999999999322222 2346888899988999999999999999988443
Q ss_pred hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh--cCCHHHHHHHHHH
Q 012413 334 NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE--DGSVKGKEFAVLT 406 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~a 406 (464)
.... -.+.+..+-.+|++.++.+++.|+.+|..+...+--...+.+--.+-..+.-+. .+.+.++..|-..
T Consensus 183 D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 183 DSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp SCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 2111 123556677889999999999999999999976432212222122333333332 3556666655443
No 72
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.71 E-value=4.7e-07 Score=92.47 Aligned_cols=268 Identities=13% Similarity=0.112 Sum_probs=183.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChH--HHHHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHhcC-
Q 012413 185 GLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVP--ALVPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITNAG- 260 (464)
Q Consensus 185 ~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~--~Ll~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g- 260 (464)
.+..+++.....+..++..++.......+.+ ...+. .++..|+. .+...+..++.+|..|...++.|..+.+.+
T Consensus 133 ~~~~dd~~~ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~ 210 (480)
T 1ho8_A 133 SLKGDFQTVLISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEK 210 (480)
T ss_dssp CSCSSHHHHHHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHH
T ss_pred HhcccchHHHHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHccc
Confidence 3445666677777777777764433321111 11222 45556665 345667789999999999999999998754
Q ss_pred -cHHHHHHHHcc---------------C--CHHHHHHHHHHHHHhcccccchhhhhccCCh--HHHHHHhhcC-ChhhHH
Q 012413 261 -AIKSLVYVLKT---------------G--TETSKQNAACALMSLALIEENKSSIGACGAI--PPLVSLLIYG-SSRGKK 319 (464)
Q Consensus 261 -~i~~Lv~lL~~---------------~--~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i--~~Li~lL~~~-~~~v~~ 319 (464)
.+|.++..++. + ...++.+++.+++-|+..++....+...+.. +.|+..++.. -..+.+
T Consensus 211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvR 290 (480)
T 1ho8_A 211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSR 290 (480)
T ss_dssp HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHH
T ss_pred chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHH
Confidence 36777655442 1 3567899999999999998877777766643 6777777764 688999
Q ss_pred HHHHHHHHHhcCc-ch----HH-HHHHcCCHHHHHHhhcC---CCHHHHHHHHHHHHH-------HhC------------
Q 012413 320 DALTTLYKLCSLK-QN----KE-RAVSAGAVRPLVGMLAG---QGEGMAEKAMVVLSL-------LAG------------ 371 (464)
Q Consensus 320 ~A~~aL~nL~~~~-~~----~~-~iv~~g~v~~Lv~lL~~---~~~~v~~~A~~aL~n-------La~------------ 371 (464)
-++.+|.|+.... .. .. .++..++ +.++..|.. .++++.+..-..... ++.
T Consensus 291 v~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~ 369 (480)
T 1ho8_A 291 LCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKL 369 (480)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCC
Confidence 9999999998854 11 12 2333445 556666643 245543332222111 111
Q ss_pred ---CHhhH---------HHHHhc--CcHHHHHHHHhc----------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCCh
Q 012413 372 ---IAEGR---------EAIVEE--NGIAALVEAIED----------GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGI 427 (464)
Q Consensus 372 ---~~~~~---------~~i~~~--g~i~~Lv~lL~~----------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i 427 (464)
+|.++ ..+-+. ..+..|+++|.+ .++.+..-|+.=|+.++.+.|..+..+.+.|+=
T Consensus 370 L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K 449 (480)
T 1ho8_A 370 LCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGK 449 (480)
T ss_dssp CCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHH
T ss_pred cccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcH
Confidence 22222 222222 268999999983 368889999999999999999999999999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 428 PPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 428 ~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+.+++++.+++++||..|..++..+..+
T Consensus 450 ~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 450 ADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887644
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.70 E-value=1.7e-07 Score=88.26 Aligned_cols=182 Identities=14% Similarity=0.046 Sum_probs=139.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhh-cCChhhHHHHHHHHHHHhcC-cchHHHHH
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLI-YGSSRGKKDALTTLYKLCSL-KQNKERAV 339 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~-~~~~~v~~~A~~aL~nL~~~-~~~~~~iv 339 (464)
+.+...+.+.+...|..|+..|..+... +.....-. ...++.|..++. +.+..++..|+.+|+.|+.. .......+
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3578888999999999999999998764 32111000 234677888884 88999999999999999973 22222333
Q ss_pred HcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-CHH--
Q 012413 340 SAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE-SVK-- 416 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~-~~~-- 416 (464)
. ..+|.|+..+.+....++..|..+|..++..... ...++.|...+++.++.+|..++..|+.+... .+.
T Consensus 97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 2 3889999999999999999999999999864321 23578888999999999999999999996543 232
Q ss_pred hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 417 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
....+ ...++.|+.++.+.+++||..|..+|..+..
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12222 2578999999999999999999999998875
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.70 E-value=3.9e-06 Score=74.47 Aligned_cols=212 Identities=19% Similarity=0.142 Sum_probs=164.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcC-CCchH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSL-HENNK 253 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~-~~~~~ 253 (464)
...++.++..|.++-+.|+.+|+..+..++...++.... .+..|+.+++. +........+.+++.++. .|+.-
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 468888899999999999999999999999998776654 34567777654 667777888899999987 34432
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.+.+|.|..-..-+++..+.+...+|..++.. ++.-.. .+..+..++.++|..-+..|+..+..+..+
T Consensus 106 -----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen- 174 (253)
T 2db0_A 106 -----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGEN- 174 (253)
T ss_dssp -----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-
T ss_pred -----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhcc-
Confidence 23677788878889999999999999998764 443333 367788899998988888888877766553
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 411 (464)
.-+.+ ..-+|.|+.+|.+.+.-++..|..+|.++| .++..|..+. .-++-+.+.+..++......|+.|.
T Consensus 175 --~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 175 --SFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp --THHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred --Ccccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22223 237899999999999999999999999999 5666555443 3566778889999999888888876
Q ss_pred h
Q 012413 412 A 412 (464)
Q Consensus 412 ~ 412 (464)
.
T Consensus 246 l 246 (253)
T 2db0_A 246 L 246 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.62 E-value=5.6e-06 Score=91.38 Aligned_cols=240 Identities=11% Similarity=0.048 Sum_probs=166.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL-KCSDPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL-~~~~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
.+++.|...|.+.+..++..|+.+|+.+-.++. +..++..|+..+ ++.+..+++.++.+|+.+....
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~----- 539 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-------KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR----- 539 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC-----
Confidence 455666777777777777788888876633311 112455566654 4467889999999999876532
Q ss_pred HHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcc
Q 012413 256 ITNAGAIKSLVYVLKT-GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~ 333 (464)
...++.+++.|.. .++.+|..++.+++--.....+. .+|+.|+..+.+ .+..+|+.|+.+|+.+....+
T Consensus 540 ---~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 540 ---QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp ---GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred ---hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 2467888888764 68888888888887543333322 256767766654 577899999999998766432
Q ss_pred hHHHHHHcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 012413 334 NKERAVSAGAVRPLVGML-AGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 334 ~~~~iv~~g~v~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~ 412 (464)
..++.++.+| .+.++.+|..|+.+|+.++..... ..++..|..+.++.+..|+..|+.+|+.++.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 3677777755 567899999999999999842211 2357788888899999999999999999997
Q ss_pred cCHHhH-HHHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHhh
Q 012413 413 ESVKNR-GLLVREGGIPPLVALSQT--GSVRAKHKAETLLGYLR 453 (464)
Q Consensus 413 ~~~~~~-~~i~~~g~i~~Lv~lL~s--~~~~v~~~A~~aL~~L~ 453 (464)
...... ..+ .+.+..|.....+ .++..+..|.-|.+.+.
T Consensus 677 gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 677 QQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred CCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 643320 011 1234456666654 46789999888887764
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.58 E-value=5.5e-06 Score=76.44 Aligned_cols=189 Identities=15% Similarity=0.107 Sum_probs=148.6
Q ss_pred chhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCC
Q 012413 96 SEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPED 174 (464)
Q Consensus 96 ~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~ 174 (464)
+|+++.-|..++++ ++.++-++..+|+++...-.+. + +.. .
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~-------------------------l-----~~~--------~ 72 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSD-------------------------L-----RMM--------V 72 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH-------------------------H-----HHH--------H
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-------------------------c-----cHH--------H
Confidence 67899999999998 8999999999999872111000 0 011 1
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHH
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKT 254 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 254 (464)
+...++.++..+++.|..+...|+++|..+-.+.+-..+.+. ..+..|..++++.++-++..|+..|+.+---...
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-- 148 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-- 148 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--
Confidence 246888889999999999999999999999988777666655 3678889999999999999999999999221222
Q ss_pred HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 012413 255 LITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK 332 (464)
Q Consensus 255 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~ 332 (464)
.+.+..+..++.+.+..++..+..+|.+++..++.+..+ .+.+..+-.+|.++|+.++..|+.+|..+...+
T Consensus 149 ----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 149 ----KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp ----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 235677889999999999999999999998865443322 334666778999999999999999999998865
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.57 E-value=9.1e-06 Score=72.16 Aligned_cols=219 Identities=16% Similarity=0.123 Sum_probs=162.2
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhccc-ccc
Q 012413 217 ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALI-EEN 293 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~-~~~ 293 (464)
+...++.++.+|.++-..++.+|+.++..++.. ++.... .+..|+-++ +++...+-...+.+++.++.. ++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 456788899999999999999999999999984 555444 344455554 456677778888889888754 332
Q ss_pred hhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC
Q 012413 294 KSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI 372 (464)
Q Consensus 294 ~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 372 (464)
-. +.+|.|..-..-++++++.+...+|..++. +|.... +++..+..++.+++..-+..|+..++.|..+
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 22 236777777777899999999999999988 555333 3556788889988876677777777766643
Q ss_pred HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 012413 373 AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYL 452 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L 452 (464)
. ..-+ .--++.|..+|.+.+.-+|..|+.+|.+++..++..|..+ ..-++-+.+.++.|++....+|..|
T Consensus 175 ~---~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 175 S---FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp T---HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred C---cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 2 1111 2458999999999999999999999999999998876654 3345556778899999999999999
Q ss_pred hcCCCCCC
Q 012413 453 REPRQEGP 460 (464)
Q Consensus 453 ~~~~~~~~ 460 (464)
.--.++.+
T Consensus 245 ~l~e~~~~ 252 (253)
T 2db0_A 245 LLLEGHSS 252 (253)
T ss_dssp HHC-----
T ss_pred HHHhcccC
Confidence 87666654
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.53 E-value=6.3e-07 Score=85.21 Aligned_cols=188 Identities=7% Similarity=-0.001 Sum_probs=136.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHH-HhccCchhHHHHHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHHhcCC---CchHHHH
Q 012413 183 IDGLQSSSVAIKRSAAAKLRL-LAKNRSDNRVLIGE-SGAVPALVPLL-KCSDPWTQEHSVTALLNLSLH---ENNKTLI 256 (464)
Q Consensus 183 v~~L~s~~~~vr~~A~~~L~~-La~~~~~~r~~i~~-~g~i~~Ll~lL-~~~~~~v~~~A~~aL~~La~~---~~~~~~i 256 (464)
-..+.+.++..|..|+..|.. +..+.+.......+ ...+..|.+.+ ++.++.++..|+.+|+.|+.. +......
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 456689999999999999999 87553432210011 23477788888 789999999999999999852 1221011
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch-
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN- 334 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~- 334 (464)
. ...+|.++..+++....++..+..+|..++... .....-.-...++.|+..|.+.++.+|..++.+|..++.....
T Consensus 102 ~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 V-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 1 227899999999999999999999998887642 1100000112577888889999999999999999999873321
Q ss_pred ---HHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 335 ---KERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 335 ---~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
....+....+|.|..++.+.+..+|..|..+|+.++.
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1122325689999999999999999999999998773
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.41 E-value=6.7e-06 Score=81.86 Aligned_cols=250 Identities=10% Similarity=-0.013 Sum_probs=161.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLI 256 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i 256 (464)
......++++.+.|...|+-.--.+..++...++. + =++..|.+=++++++-+|-.|+++|+++...+-. +
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~-~-- 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML-Q-- 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH-H--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH-H--
Confidence 34455578899999999999998888888774332 2 2567788888899999999999999999754321 1
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHH
Q 012413 257 TNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKE 336 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 336 (464)
...+.+.+.|.+.++.+|..|+.+...|.... .+ ++ .+.++.+-+++.+.++.+..+|+.+|..+..++..
T Consensus 139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe-~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FD-VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HH-HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HH-HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 25667888999999999999999999986542 12 22 25789999999999999999999999999875421
Q ss_pred HHHHcCCHHHHHHhhcCC---CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 337 RAVSAGAVRPLVGMLAGQ---GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~---~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
++..|+..+... ++-.+..-+..+..++..++ .-.....++.|..+|++.++-|...|+.++..+...
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 334445544432 22223333333333332110 011234566677777888999999999999998652
Q ss_pred CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcCCCC
Q 012413 414 SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREPRQE 458 (464)
Q Consensus 414 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~~~~ 458 (464)
... + -..++..|..++.++++.+|..|...|..+....++
T Consensus 281 ~~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 281 SAK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred CHH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 211 1 134578888899999999999999888888776554
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.32 E-value=6e-06 Score=78.37 Aligned_cols=190 Identities=9% Similarity=0.032 Sum_probs=137.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-hccc-ccchhhhhc-cCChHHHHHHh-hcCChhhHHHHHHHHHHHhcC-c-chHH-H
Q 012413 265 LVYVLKTGTETSKQNAACALMS-LALI-EENKSSIGA-CGAIPPLVSLL-IYGSSRGKKDALTTLYKLCSL-K-QNKE-R 337 (464)
Q Consensus 265 Lv~lL~~~~~~v~~~a~~aL~~-Ls~~-~~~~~~i~~-~g~i~~Li~lL-~~~~~~v~~~A~~aL~nL~~~-~-~~~~-~ 337 (464)
+...+.+.+..-|..|+..|.. +... ++......+ ...+..|.+.+ .+.+..++..|+.+|+.|+.. . .... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5567788999999999999999 8642 221110111 23466777888 678999999999999999862 1 2222 2
Q ss_pred HHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 338 AVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 338 iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.... .+|.++..+.+....++..+..+|-.++.. +.....-.-...++.|+..|++.++.+|..++.+|..+....+.
T Consensus 101 y~~~-llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSL-VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHH-HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 3322 789999999999999999999999888842 11000000113677888999999999999999999999865442
Q ss_pred h-HH--HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 417 N-RG--LLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 417 ~-~~--~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
. .. .......++.|..++.+.++.||..|..+|..+.+.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 1 11 111257899999999999999999999999987753
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.28 E-value=9.2e-05 Score=73.64 Aligned_cols=209 Identities=11% Similarity=-0.006 Sum_probs=146.2
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG 298 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 298 (464)
.....+++++.+++..+++-.-..+.+++..++.. + =++..|.+=++++++-+|-.|+.+|+++...+ .-+.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~~~-- 139 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-MLQA-- 139 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-THHH--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HHHH--
Confidence 45566788999999999999999999998864321 1 25677888889999999999999999985432 1111
Q ss_pred ccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHH
Q 012413 299 ACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREA 378 (464)
Q Consensus 299 ~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 378 (464)
..+.+-+.|.+.++.||+.|+-+..+|....+. ++ .+.+..+-+++.+.++.++.+|+.+|..+...+.
T Consensus 140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---- 208 (355)
T 3tjz_B 140 ---IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR---- 208 (355)
T ss_dssp ---HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH----
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch----
Confidence 356677888899999999999999999874322 23 3688999999999999999999999999986431
Q ss_pred HHhcCcHHHHHHHHhcC---CHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 379 IVEENGIAALVEAIEDG---SVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
..+..|+..+... ++..+..-+..+..++..+ +. .....++.|...|++.++.|...|++++-.+..
T Consensus 209 ----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 209 ----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 1455556666543 4666666666665665443 22 123567788888899999999999999988876
Q ss_pred C
Q 012413 455 P 455 (464)
Q Consensus 455 ~ 455 (464)
.
T Consensus 280 ~ 280 (355)
T 3tjz_B 280 C 280 (355)
T ss_dssp -
T ss_pred C
Confidence 3
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.01 E-value=8e-05 Score=76.12 Aligned_cols=231 Identities=16% Similarity=0.088 Sum_probs=158.2
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHhccCchhHHHHHhcC--ChHHHHHhhcC-----------------CCHHHHHHHH
Q 012413 181 ICIDGLQS-SSVAIKRSAAAKLRLLAKNRSDNRVLIGESG--AVPALVPLLKC-----------------SDPWTQEHSV 240 (464)
Q Consensus 181 ~Lv~~L~s-~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g--~i~~Ll~lL~~-----------------~~~~v~~~A~ 240 (464)
.++..|.. .+.+.+.-++.+|..+... +..|..+.+.+ .+++++..++. ....++..++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 34555555 3456666789999888887 78888887643 36667654431 1357789999
Q ss_pred HHHHHhcCCCchHHHHHhcCcH--HHHHHHHccC-CHHHHHHHHHHHHHhcccc-cc-----hhhhhccCChHHHHHHhh
Q 012413 241 TALLNLSLHENNKTLITNAGAI--KSLVYVLKTG-TETSKQNAACALMSLALIE-EN-----KSSIGACGAIPPLVSLLI 311 (464)
Q Consensus 241 ~aL~~La~~~~~~~~i~~~g~i--~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~-~~-----~~~i~~~g~i~~Li~lL~ 311 (464)
.++.-|+.+++....+...+.. +.|+..++.. -+.+.+-++.+|.|+.... .. .+.++..++ +++++.|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999998877777777644 6677777764 6889999999999988653 11 222333343 55666665
Q ss_pred cC---ChhhHHHHHHHH-------HHHh---------------cCcchH-HHHHH----------cCCHHHHHHhhcC--
Q 012413 312 YG---SSRGKKDALTTL-------YKLC---------------SLKQNK-ERAVS----------AGAVRPLVGMLAG-- 353 (464)
Q Consensus 312 ~~---~~~v~~~A~~aL-------~nL~---------------~~~~~~-~~iv~----------~g~v~~Lv~lL~~-- 353 (464)
.. |+++....-.+. ..++ -+|..+ +.|.. ...+..|+.+|.+
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 43 555444322211 1112 122222 13322 2357889999973
Q ss_pred --------CCHHHHHHHHHHHHHHh-CCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 354 --------QGEGMAEKAMVVLSLLA-GIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 354 --------~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
.++.+..-||.=|+.++ ..|.++..+-+-|+=..++++|.+++++|+.+|+.|+..+..+
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 24566777788888888 5788888888899999999999999999999999999887653
No 83
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.99 E-value=0.00019 Score=70.02 Aligned_cols=151 Identities=17% Similarity=0.091 Sum_probs=127.1
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHH-HhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh-
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYK-LCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE- 381 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~n-L~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~- 381 (464)
..+++-|.+.+...++.++.-|.. +..+......|+..+|+..|+.++...+...+.+++.+|.+|..+..+-..+++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 455666777888889999999998 556788999999999999999999999999999999999999999888877775
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc----------CChHHHHHhhh---cCCHHHHHHHHHH
Q 012413 382 ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKNRGLLVRE----------GGIPPLVALSQ---TGSVRAKHKAETL 448 (464)
Q Consensus 382 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~----------g~i~~Lv~lL~---s~~~~v~~~A~~a 448 (464)
...|..+..++.+....+...|+..|..++..++.+...+.++ .-.+.|+.+|+ +.+.+++..|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 4589999999999889999999999999998876555444332 13789999998 6788999998888
Q ss_pred HHHhhc
Q 012413 449 LGYLRE 454 (464)
Q Consensus 449 L~~L~~ 454 (464)
+..+-.
T Consensus 281 IN~lL~ 286 (339)
T 3dad_A 281 INKTLA 286 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766543
No 84
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.92 E-value=0.00052 Score=66.96 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=137.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-hcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHH-c
Q 012413 264 SLVYVLKTGTETSKQNAACALMS-LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVS-A 341 (464)
Q Consensus 264 ~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~-~ 341 (464)
.+++-|.+.+...+..++.-|.. ++.+.+....++..+|+..|+.+....+...+..++.+|.+|..+..+..-++. .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34556667777888888888988 666778888999999999999999999999999999999999999888777774 5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-HhhHHHHHhcC----------cHHHHHHHHh---cCCHHHHHHHHHHH
Q 012413 342 GAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI-AEGREAIVEEN----------GIAALVEAIE---DGSVKGKEFAVLTL 407 (464)
Q Consensus 342 g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g----------~i~~Lv~lL~---~~~~~v~~~A~~aL 407 (464)
..|..+..++.+....+.+.|+.+|..++.+ +.+...+.++- -.+.|+.+|+ +.+..++.+|...|
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 5789999999988899999999999999954 33443333211 2789999998 67899999988888
Q ss_pred HHHhhcCH--HhHH----HHHHcCChHHHHHhhhcC--CHHHHHH
Q 012413 408 LQLCAESV--KNRG----LLVREGGIPPLVALSQTG--SVRAKHK 444 (464)
Q Consensus 408 ~~L~~~~~--~~~~----~i~~~g~i~~Lv~lL~s~--~~~v~~~ 444 (464)
-.+....+ +.+. .+.+.|.-..+...+... +++++++
T Consensus 282 N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 282 NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 77765533 2222 233445445666667664 5666655
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.83 E-value=0.002 Score=71.96 Aligned_cols=270 Identities=10% Similarity=0.054 Sum_probs=182.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc---hH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN---NK 253 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~---~~ 253 (464)
..++.+++.+...+..-+..++..+..+..+....+ ....+.+..|...+.+.... +.|+.++..|+.... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 455556666766555556777878877766432211 11236777888888774434 999999999996432 11
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccc--ccchhhhhccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALI--EENKSSIGACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCS 330 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~ 330 (464)
..+. .+.+|.++..+.+....+|..|..++..+... ++.. ...+|.|+..|.+. ....+..|+.++..|+.
T Consensus 90 e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 90 EPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 2221 25788888998888999999888888777543 2222 33589999999776 57899999999999997
Q ss_pred CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC---CH-------hhHHHHHhcC-----------------
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG---IA-------EGREAIVEEN----------------- 383 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~---~~-------~~~~~i~~~g----------------- 383 (464)
....+-...-...+|.+-..+.+..+++...|..++..+|. +. ...+.+.+..
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~ 243 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAE 243 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSC
T ss_pred HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEee
Confidence 43222111224589999999999999999999988888874 21 1122222111
Q ss_pred --------cHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--CHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHh
Q 012413 384 --------GIAALVEAIEDGSVKGKEFAVLTLLQLCAE--SVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYL 452 (464)
Q Consensus 384 --------~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L 452 (464)
.+|.|..-|.+.+..+++.++.++.|||.- ++.....+. -..+|.|.+.... .+|++|+.|..|+..|
T Consensus 244 v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 244 VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 245555566667888999999999999974 444333332 2456666665544 5899999999999999
Q ss_pred hcCCC
Q 012413 453 REPRQ 457 (464)
Q Consensus 453 ~~~~~ 457 (464)
.+...
T Consensus 323 ~~~~~ 327 (986)
T 2iw3_A 323 RRVGN 327 (986)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 66443
No 86
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.82 E-value=3.6e-06 Score=79.59 Aligned_cols=179 Identities=15% Similarity=0.051 Sum_probs=95.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHH
Q 012413 184 DGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIK 263 (464)
Q Consensus 184 ~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~ 263 (464)
.++.++++.||..++..| ....|..+++++++.||..++..|. .+
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~-----------------~~ 101 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP-----------------RE 101 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC-----------------SG
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC-----------------HH
Confidence 445888999999998743 1233566677777777777775420 13
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHH-----HHhcCc--chHH
Q 012413 264 SLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLY-----KLCSLK--QNKE 336 (464)
Q Consensus 264 ~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~-----nL~~~~--~~~~ 336 (464)
.|..++++++..||..++..| . .+.|..++.+++..||..++..+. .+..++ .-+.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~ 164 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRK 164 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHH
Confidence 455566666666666666532 1 112333444555555555544110 000000 0000
Q ss_pred HHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHH
Q 012413 337 RAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 337 ~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
.+...-..+.|..++.+++..|+..++..| ..+.|..++.+++..||..++..++
T Consensus 165 ~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~-------- 219 (244)
T 1lrv_A 165 LVAKRLPEESLGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS-------- 219 (244)
T ss_dssp HHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC--------
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC--------
Confidence 000000112333444555555555554431 3356667777777777777777643
Q ss_pred hHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 417 NRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 417 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
.+.|..+ ++++..|+..|...|+
T Consensus 220 ----------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ----------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ----------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ----------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 3555556 8888999999887664
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.71 E-value=0.0035 Score=69.95 Aligned_cols=221 Identities=13% Similarity=0.097 Sum_probs=155.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCchHHH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-DPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~-~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+.++.++....+....||..|-.++..+...-+.... ..++|.|+..|++. ....+..|+.+|..|+......-.
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566667788888889999988888777765433221 35788888888764 688999999999999864322112
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCc---
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLK--- 332 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~--- 332 (464)
..-...||.+...+.+..++++..|..++..+|..-+|++. ...||.|++.+.+++. .-.++..|+...
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~ 242 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE-----VPETVHLLGATTFVA 242 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCS
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEe
Confidence 22256889999999999999999999999999876555432 2458999999998743 233444444422
Q ss_pred chHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC---CHhhHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHH
Q 012413 333 QNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG---IAEGREAIVEENGIAALVEAIED-GSVKGKEFAVLTLL 408 (464)
Q Consensus 333 ~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~---~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~ 408 (464)
+--.--. +=.+|.|..-|......++++++.++.|||. ++.-...++ ...+|.|-..... .+|++|+.|..++.
T Consensus 243 ~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 243 EVTPATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALK 320 (986)
T ss_dssp CCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred eecchhH-HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHH
Confidence 2111111 1156888888888899999999999999995 333232232 4566666665553 68999999988888
Q ss_pred HHh
Q 012413 409 QLC 411 (464)
Q Consensus 409 ~L~ 411 (464)
.|-
T Consensus 321 ~l~ 323 (986)
T 2iw3_A 321 TLR 323 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 88
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.43 E-value=0.00036 Score=78.61 Aligned_cols=254 Identities=11% Similarity=0.116 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc------CCCHHHHHHHHHHHHHhcCCCchHHHHHhc-----C
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK------CSDPWTQEHSVTALLNLSLHENNKTLITNA-----G 260 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~------~~~~~v~~~A~~aL~~La~~~~~~~~i~~~-----g 260 (464)
..|..|..+|..++...+ +.+.. ..++.+.+.+. +.+...++.|+.+++.++..-.....-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 467888888888887633 12211 23344444455 566788999999999997531100000000 1
Q ss_pred cHH----HHHHHHccC---CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 012413 261 AIK----SLVYVLKTG---TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ 333 (464)
Q Consensus 261 ~i~----~Lv~lL~~~---~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~ 333 (464)
..+ .++..|+++ ++.+|..|+|+|+.++..- ... .-...++.++..|.+++..|+..|+.+|.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 222 234455666 8999999999999998652 111 112347788888888889999999999999987421
Q ss_pred ---------hHHHHHH--cCCHHHHHHhhcCCC---HH--HHHHHHHHHHHHhCC--HhhHHHHHhcCcHHHHHHHHh--
Q 012413 334 ---------NKERAVS--AGAVRPLVGMLAGQG---EG--MAEKAMVVLSLLAGI--AEGREAIVEENGIAALVEAIE-- 393 (464)
Q Consensus 334 ---------~~~~iv~--~g~v~~Lv~lL~~~~---~~--v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~-- 393 (464)
.+..+.. ...++.|+.++.... .. ..+.++.+|..++.. +.....+ ...++.|+..+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Confidence 1222221 335566667776541 11 234566666665421 1111111 113344444443
Q ss_pred --c-CCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 394 --D-GSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 394 --~-~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
+ .++..+..+..+|+.++.. .++.... .....++.+..++.....+....+..++..+.+.
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 2 3567777889999988875 3322222 2345678888888776555666666666666544
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0052 Score=58.59 Aligned_cols=184 Identities=13% Similarity=0.072 Sum_probs=124.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCchhH--HHHH-hc-CChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc----hH
Q 012413 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR--VLIG-ES-GAVPALVPLLKCSDPWTQEHSVTALLNLSLHEN----NK 253 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r--~~i~-~~-g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~----~~ 253 (464)
+-+.|.+.++..|..|+..|..+....+... .... .. ...+.+-..+.+.+..++..++.+|..++..-. .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3478899999999999999988765533211 1111 11 345566678889999999999999998875311 11
Q ss_pred H--HHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 254 T--LITNAGAIKSLVY-VLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 254 ~--~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
. ...-...+|.|+. .|.+....++..+..++..+......... .++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 1122446777775 47888899999999988877543221111 24666677788899999999998888754
Q ss_pred C--cc--hHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 331 L--KQ--NKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 331 ~--~~--~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
. .. +....+. .+++.+..++.+.++.||..|..++..|-.
T Consensus 169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 2 11 1111221 245567788899999999999999988764
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.33 E-value=0.0011 Score=68.59 Aligned_cols=243 Identities=11% Similarity=0.000 Sum_probs=160.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhc--CChHHHHHh--hcC-----C---CHHHHHHHHHHHHH
Q 012413 178 TVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGES--GAVPALVPL--LKC-----S---DPWTQEHSVTALLN 245 (464)
Q Consensus 178 ~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~--g~i~~Ll~l--L~~-----~---~~~v~~~A~~aL~~ 245 (464)
..+.|+.-|-++.+++|-.|+.+|+.+.+............ ...-.|+.. |.. . -.-||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 67778888899999999999999999887644221111111 122222222 222 1 14689999999999
Q ss_pred hcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhh-ccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 246 LSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIG-ACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 246 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~-~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
+ .+-+.. ..++..|+..+..+.-+++.-++..|..+ ++.+. -.+.++.++..|.+.+.+|+..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 9 753221 34566666666788899999999999998 22222 14557788888899999999999999
Q ss_pred HHHHhcCcchHHHHHHcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHH
Q 012413 325 LYKLCSLKQNKERAVSAGAVRPLVGMLAGQ--GEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEF 402 (464)
Q Consensus 325 L~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 402 (464)
|.-++ .++....+ +..+-..|.+- =.......+..|+.|+..+.. .-.....+|.|-.++.+.-..||..
T Consensus 323 LiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 323 LCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp HTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence 99988 33332222 23333344322 233356667778877754431 1112368999999999999999999
Q ss_pred HHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 012413 403 AVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLG 450 (464)
Q Consensus 403 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 450 (464)
++.+|..+. ... .+ =-...++|-..+++++..+..+-+
T Consensus 395 VL~TL~tfL--~~~---~L-----RLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EES---ID-----FLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CHH---HH-----HHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhh---HH-----HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999998887 111 11 023345566678888888877765
No 91
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.20 E-value=0.00011 Score=69.43 Aligned_cols=70 Identities=14% Similarity=-0.004 Sum_probs=49.9
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcC
Q 012413 304 PPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEEN 383 (464)
Q Consensus 304 ~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g 383 (464)
+.|..++.+++..||..++..| ..+.|..++.+++..|+..++..+.
T Consensus 173 ~ll~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~---------------- 219 (244)
T 1lrv_A 173 ESLGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS---------------- 219 (244)
T ss_dssp GGGGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC----------------
T ss_pred HHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC----------------
Confidence 3444566677777777766542 3467888899999999999888753
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
.+.|..+ ++++..|+..|+..|+
T Consensus 220 -~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 -LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 3455555 8889999998887654
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0021 Score=61.42 Aligned_cols=191 Identities=13% Similarity=0.038 Sum_probs=120.6
Q ss_pred HHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhcCcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCchHHH
Q 012413 101 LNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQPNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTV 179 (464)
Q Consensus 101 ~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v 179 (464)
.||.+-|.+ +++.|..+.+++.++.+......... + ..+.+ ....+.+
T Consensus 12 lpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~--------~-~~~~~----------------------~~~~~~l 60 (278)
T 4ffb_C 12 LPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRD--------D-NIQIY----------------------WRDPTLF 60 (278)
T ss_dssp CCHHHHTTCSSHHHHHHHHHHHHHHHHTC-------------------CCT----------------------TSCTHHH
T ss_pred CCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccch--------h-HHHHH----------------------HHHHHHH
Confidence 456677777 99999999999988743322111000 0 11111 0112333
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCch---hHH--HHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHhcCCCchH
Q 012413 180 KICIDGLQSSSVAIKRSAAAKLRLLAKNRSD---NRV--LIGESGAVPALVP-LLKCSDPWTQEHSVTALLNLSLHENNK 253 (464)
Q Consensus 180 ~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~---~r~--~i~~~g~i~~Ll~-lL~~~~~~v~~~A~~aL~~La~~~~~~ 253 (464)
-+.+.+.+..++..++.+|..++..-.. .+. ...-...++.|+. +|.+..+.++..|..++..++......
T Consensus 61 ---kk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~ 137 (278)
T 4ffb_C 61 ---AQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI 137 (278)
T ss_dssp ---HHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS
T ss_pred ---HHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH
Confidence 4567889999999999999888754211 111 1112356777775 588889999999999888776432221
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchh---hhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKS---SIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS 330 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~---~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~ 330 (464)
.. .++.++..++..++.++..++.+|..+...-..+. ...-...++.+..+|.+.++.||..|..++..+-.
T Consensus 138 ~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 138 TQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 11 34667778889999999999999988653211100 00001235567788899999999999999998865
No 93
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.11 E-value=0.03 Score=52.35 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=152.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHh-------hcCC-----CHHHHHHHHHHHHH
Q 012413 179 VKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE-SGAVPALVPL-------LKCS-----DPWTQEHSVTALLN 245 (464)
Q Consensus 179 v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~-~g~i~~Ll~l-------L~~~-----~~~v~~~A~~aL~~ 245 (464)
+..++.-|..+ +.|+.|+..|..--..-+...-.+-. .|.+..|++= +..+ ...-..+|+..|..
T Consensus 5 i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 5 IYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 33445445543 34777766554433222333333333 4666666542 2211 12234566777777
Q ss_pred hcCCCchHHHHHhcCcHHHHHHHHccCC-----HHHHHHHHHHHHHhcccc--cchhhhhccCChHHHHHHhhcCChhhH
Q 012413 246 LSLHENNKTLITNAGAIKSLVYVLKTGT-----ETSKQNAACALMSLALIE--ENKSSIGACGAIPPLVSLLIYGSSRGK 318 (464)
Q Consensus 246 La~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~Li~lL~~~~~~v~ 318 (464)
++.|++.|..+.++...-.|...|+..+ +.+|..++++++.|.+.+ +.-..+...+.||..+..++.++.-.+
T Consensus 83 vAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSK 162 (268)
T 2fv2_A 83 VASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 162 (268)
T ss_dssp HHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHH
Confidence 8999999999999988878888887653 689999999999999763 445556678899999999999999999
Q ss_pred HHHHHHHHHHhcCcchHHHH-------HH-cCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh-------c
Q 012413 319 KDALTTLYKLCSLKQNKERA-------VS-AGAVRPLVG-MLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE-------E 382 (464)
Q Consensus 319 ~~A~~aL~nL~~~~~~~~~i-------v~-~g~v~~Lv~-lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~-------~ 382 (464)
.-|..++..+-.++.+...+ .. ..++..++. +...+.+.+.++...+-..|+.++..++.+.. .
T Consensus 163 tvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd 242 (268)
T 2fv2_A 163 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKD 242 (268)
T ss_dssp HHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTS
T ss_pred HHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhC
Confidence 99999999988877654333 21 123333333 44677888999999999999999998888875 1
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQL 410 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L 410 (464)
|... .++ .+++..+..-...+.|+
T Consensus 243 ~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 243 TTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp STTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred hHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 2222 222 34677777666666655
No 94
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.10 E-value=0.033 Score=62.48 Aligned_cols=247 Identities=14% Similarity=0.054 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHH
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLV 266 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 266 (464)
..|..+..+|..++..-+. .+.. -.++.+-..+.+ .+...++.|+.+|+.++....... ...++.++
T Consensus 436 ~~R~~~~~~l~~~~~~~~~---~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~ 507 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLND---YILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH---HHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHH
Confidence 3566777777776654221 1111 122223333333 566789999999999987532111 23445555
Q ss_pred HHH---c--cCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHH
Q 012413 267 YVL---K--TGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVS 340 (464)
Q Consensus 267 ~lL---~--~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~ 340 (464)
.++ . +.++.++..++++|+.++..- ..... -...++.|+..| + +.++..|+.++.+++.. .+..+..
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p 580 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKP 580 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHH
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccc
Confidence 443 3 348899999999999987541 11111 123456667677 3 78999999999999962 2222321
Q ss_pred --cCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhCC-H-hhHHHHHhcCcHHHHHH----HHhcC--CHHHHHHHHHHHH
Q 012413 341 --AGAVRPLVGMLAG--QGEGMAEKAMVVLSLLAGI-A-EGREAIVEENGIAALVE----AIEDG--SVKGKEFAVLTLL 408 (464)
Q Consensus 341 --~g~v~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~-~-~~~~~i~~~g~i~~Lv~----lL~~~--~~~v~~~A~~aL~ 408 (464)
.+.+..|..++.. .+...+..++.+++.++.. + +.+..... ..++++++ ++... +++.+.....++.
T Consensus 581 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 659 (971)
T 2x1g_F 581 YADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLN 659 (971)
T ss_dssp HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 3355666777766 3577888899999988742 1 22222221 23344443 33332 4444555555665
Q ss_pred HHhhc-----CH--Hh------HH--HHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHhhc
Q 012413 409 QLCAE-----SV--KN------RG--LLVREGGIPPLVALSQT--GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 409 ~L~~~-----~~--~~------~~--~i~~~g~i~~Lv~lL~s--~~~~v~~~A~~aL~~L~~ 454 (464)
.|+.. .. .. .. .-.....++.+..++.. .++.+.+.+.++++.+..
T Consensus 660 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 660 MISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 55431 00 00 00 11124577777777754 367999999999998654
No 95
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.10 E-value=0.022 Score=63.95 Aligned_cols=218 Identities=10% Similarity=0.106 Sum_probs=125.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCchhHHHHHhc-----CChH----HHHHhhcCC---CHHHHHHHHHHHHHhcCCCchHHH
Q 012413 188 SSSVAIKRSAAAKLRLLAKNRSDNRVLIGES-----GAVP----ALVPLLKCS---DPWTQEHSVTALLNLSLHENNKTL 255 (464)
Q Consensus 188 s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~-----g~i~----~Ll~lL~~~---~~~v~~~A~~aL~~La~~~~~~~~ 255 (464)
+.++..|+.|+.+++.++.+........ .. ...+ .++..|.++ ++.+|..|+++|+.++..-. ...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~-~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGV-SSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBC-CCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCc-ccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHH
Confidence 5678899999999999985421110000 00 1222 234445666 89999999999999986421 111
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccccc---------chhhhhc--cCChHHHHHHhhcCC-----hhhHH
Q 012413 256 ITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEE---------NKSSIGA--CGAIPPLVSLLIYGS-----SRGKK 319 (464)
Q Consensus 256 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~---------~~~~i~~--~g~i~~Li~lL~~~~-----~~v~~ 319 (464)
-...++.++..|.+++..++..|+++|.+++...+ .+..+.. ...++.|+.++.... .....
T Consensus 494 --l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 --LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred --HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 23468888999988899999999999999887421 1232321 234455556666531 11335
Q ss_pred HHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhh----cC-CCHHHHHHHHHHHHHHhCC--HhhHHHHHhcCcHHHHHHH
Q 012413 320 DALTTLYKLCSL-KQNKERAVSAGAVRPLVGML----AG-QGEGMAEKAMVVLSLLAGI--AEGREAIVEENGIAALVEA 391 (464)
Q Consensus 320 ~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL----~~-~~~~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~l 391 (464)
.+..+|..++.. .+....+.. ..++.|+..+ ++ .++.....++.+|+.++.. ++... -.....++.+...
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~i 649 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHH
Confidence 666666665441 111111111 1334444444 22 3455666788888888743 32222 2334567777777
Q ss_pred HhcCCHHHHHHHHHHHHHHh
Q 012413 392 IEDGSVKGKEFAVLTLLQLC 411 (464)
Q Consensus 392 L~~~~~~v~~~A~~aL~~L~ 411 (464)
|.....+....+...+..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 77654555555555555544
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.78 E-value=0.044 Score=51.97 Aligned_cols=173 Identities=10% Similarity=0.068 Sum_probs=118.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH----hhcCCCHHHHHHHHHHHHHhcCC---CchHHH
Q 012413 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVP----LLKCSDPWTQEHSVTALLNLSLH---ENNKTL 255 (464)
Q Consensus 183 v~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~----lL~~~~~~v~~~A~~aL~~La~~---~~~~~~ 255 (464)
...|-+.+...+..|+..|......+++ .+. ..++.++. -+.+.++.+...++.+|..+... .+.+-.
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4556677888888888888666544332 221 22333333 33467899999999888886421 111100
Q ss_pred HHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcch
Q 012413 256 ITN-AGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQN 334 (464)
Q Consensus 256 i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~ 334 (464)
-.+ .-.+|.|+.-+.+..+.+|..+-.++..|... .-....++.+++-+.+.+..+|..++..+..+-.....
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 011 22689999999999999999988888777532 11123578888888999999999999999888652211
Q ss_pred HHHHHHcCCH---HHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 335 KERAVSAGAV---RPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 335 ~~~iv~~g~v---~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
. ...++ +.+..++.+.+..|+..|+.++..+-
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 23478 99999999999999999998887554
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.77 E-value=0.13 Score=57.48 Aligned_cols=215 Identities=11% Similarity=0.061 Sum_probs=127.3
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHH---ccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChH
Q 012413 229 KCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVL---KTGTETSKQNAACALMSLALI-EENKSSIGACGAIP 304 (464)
Q Consensus 229 ~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~ 304 (464)
.+.+...++.++++++.++..... .....++.++..+ .++++.++..++++++..+.. ..... . -...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHHH
Confidence 556788999999999999875221 0123344455444 335788999999999998764 22221 1 246788
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHH--cCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhCC-H-hhHHH
Q 012413 305 PLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVS--AGAVRPLVGMLAG--QGEGMAEKAMVVLSLLAGI-A-EGREA 378 (464)
Q Consensus 305 ~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~--~g~v~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~-~-~~~~~ 378 (464)
.|+..|.+ +.++..|+.+|.+++.. .+..+.. .+.+..|..++.. .+...+..+..+++.++.. + +....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88888854 88999999999999862 1111211 2244455556654 3567788889999998843 2 33332
Q ss_pred HHhcCcHHHHHHHHh----c-CCHHHHH---HHHHHHHHHhhc-C---H-H--------------h--HHHHHHcCChHH
Q 012413 379 IVEENGIAALVEAIE----D-GSVKGKE---FAVLTLLQLCAE-S---V-K--------------N--RGLLVREGGIPP 429 (464)
Q Consensus 379 i~~~g~i~~Lv~lL~----~-~~~~v~~---~A~~aL~~L~~~-~---~-~--------------~--~~~i~~~g~i~~ 429 (464)
.+ ...++++.+.+. . .+++.+. ....+|+.+... . + . . -..-.....++.
T Consensus 609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (963)
T 2x19_B 609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence 22 234555554443 2 2454444 344444444432 0 0 0 0 001112334556
Q ss_pred HHHhhhc--CCHHHHHHHHHHHHHhhc
Q 012413 430 LVALSQT--GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 430 Lv~lL~s--~~~~v~~~A~~aL~~L~~ 454 (464)
+..++.. .++.+.+.++.+++.+..
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 6666543 467899999988888654
No 98
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.66 E-value=0.065 Score=60.04 Aligned_cols=224 Identities=14% Similarity=0.056 Sum_probs=129.0
Q ss_pred hHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcc---------CchhHHHHHh--cCChHHHHHhhcCC--------
Q 012413 176 QPTVKICIDGLQS-----SSVAIKRSAAAKLRLLAKN---------RSDNRVLIGE--SGAVPALVPLLKCS-------- 231 (464)
Q Consensus 176 ~~~v~~Lv~~L~s-----~~~~vr~~A~~~L~~La~~---------~~~~r~~i~~--~g~i~~Ll~lL~~~-------- 231 (464)
...++.|+..... .++++...++..+..++.. .......+.. ...++.++..+..+
T Consensus 347 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~ 426 (971)
T 2x1g_F 347 HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW 426 (971)
T ss_dssp HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS
T ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 3455666665533 4677888888877666541 1111111111 13445555544321
Q ss_pred CH-------HHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhcccccchhhhhc
Q 012413 232 DP-------WTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT-----GTETSKQNAACALMSLALIEENKSSIGA 299 (464)
Q Consensus 232 ~~-------~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~ 299 (464)
++ ..|..+..+|..++..-. ..+.. -.++.+-..+.. .+...++.++.++..++..-....
T Consensus 427 d~~e~~~f~~~R~~~~~~l~~~~~~~~--~~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~---- 499 (971)
T 2x1g_F 427 SSDDLECFRCYRQDISDTFMYCYDVLN--DYILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE---- 499 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCT--THHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---------
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHh--HHHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----
Confidence 11 356677777777765322 11110 012223333333 466788999999999986522111
Q ss_pred cCChHHHHHHh---h--cCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 300 CGAIPPLVSLL---I--YGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 300 ~g~i~~Li~lL---~--~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
...++.++.++ . +.++.++..++++|+.++.. ..+. .... .+++.|+..| + +.++..|+.++.+++.
T Consensus 500 ~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~-~vl~~l~~~l-~--~~v~~~A~~al~~l~~-- 572 (971)
T 2x1g_F 500 KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIP-PAINLLVRGL-N--SSMSAQATLGLKELCR-- 572 (971)
T ss_dssp -CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHH-H--SSCHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHH-HHHHHHHHHh-C--hHHHHHHHHHHHHHHH--
Confidence 13345555544 2 34788999999999998863 2222 1121 2566777777 3 6789999999999993
Q ss_pred hhHHHHHh--cCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhc
Q 012413 374 EGREAIVE--ENGIAALVEAIED--GSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 374 ~~~~~i~~--~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~ 413 (464)
..+..+.. ...+..|.+++.. -+...+..+..+++.++..
T Consensus 573 ~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 573 DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 23333432 4567777777876 4688999999999999864
No 99
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.64 E-value=0.034 Score=53.91 Aligned_cols=137 Identities=9% Similarity=0.047 Sum_probs=93.6
Q ss_pred ChhhHHHHHHHHHHHhcCcchHHHHHH--cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHH-HhcCcHHHHHH
Q 012413 314 SSRGKKDALTTLYKLCSLKQNKERAVS--AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAI-VEENGIAALVE 390 (464)
Q Consensus 314 ~~~v~~~A~~aL~nL~~~~~~~~~iv~--~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i-~~~g~i~~Lv~ 390 (464)
.+..+.-++++++|+-.++..++.+.. ...++.+...+.+.+..++..++.++.|++........+ ....++..+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~ 240 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST 240 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 456788999999999999988887765 235555666666678899999999999998421100000 01113444455
Q ss_pred HHh-cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHH
Q 012413 391 AIE-DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLG 450 (464)
Q Consensus 391 lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~ 450 (464)
++. ..+.+....++.+|++|...+.+.+......|+...+-++... ..+.|.+.|...|.
T Consensus 241 il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 241 ILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 554 3688999999999999998776656555556666666666655 35688887776654
No 100
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.48 E-value=0.052 Score=52.81 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=149.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhH----HHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNR----VLIGE-SGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE 250 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r----~~i~~-~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~ 250 (464)
.+++..|+..|..-+.+.|+.+..+..++.......+ ..+.. ...+..|+.-. +++++-..+...|....+++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhH
Confidence 3678888999999999999999999988887654332 12221 12222233322 46677778888888889998
Q ss_pred chHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhc-ccccchhhhhcc---CChHHHHHHhhcCChhhHHHHHHHHH
Q 012413 251 NNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLA-LIEENKSSIGAC---GAIPPLVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 251 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls-~~~~~~~~i~~~---g~i~~Li~lL~~~~~~v~~~A~~aL~ 326 (464)
.....+...+.+-.+.+..+.++-++..-|..++..|- .|.......... ..+...-.||.+++--++++++..|+
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 88888888888889999999999999999999998753 343333333322 34667778999999999999999999
Q ss_pred HHhcCcchHHHHHH----cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCH
Q 012413 327 KLCSLKQNKERAVS----AGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIA 373 (464)
Q Consensus 327 nL~~~~~~~~~iv~----~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 373 (464)
.|-.++.|...+.. ..-+..++.+|++....++.+|..+..-...+|
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 99999888777653 446788999999999999999999999887654
No 101
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.42 E-value=0.042 Score=51.33 Aligned_cols=146 Identities=18% Similarity=0.134 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHhcCC--CchHHHHHhcCcHHHHH
Q 012413 194 KRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS-----DPWTQEHSVTALLNLSLH--ENNKTLITNAGAIKSLV 266 (464)
Q Consensus 194 r~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~-----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv 266 (464)
..+|+..|..+|.| ++.|..+.++...-.|...|... ...+|..++.+++.|.+. ++....+.+.+.||..+
T Consensus 73 VcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 35677777888887 88889999988877788887653 357899999999999984 35556677899999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccccchhhhhc-c-------CChHHHHH-HhhcCChhhHHHHHHHHHHHhcCcchHHH
Q 012413 267 YVLKTGTETSKQNAACALMSLALIEENKSSIGA-C-------GAIPPLVS-LLIYGSSRGKKDALTTLYKLCSLKQNKER 337 (464)
Q Consensus 267 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~-------g~i~~Li~-lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 337 (464)
+.+..+++-.|..|...+..+-.++.+-..+.. . ..+..++. +..++++.+.+...++-..|+.++..++.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999998777655443332 1 12333333 33457889999999999999999988877
Q ss_pred HHH
Q 012413 338 AVS 340 (464)
Q Consensus 338 iv~ 340 (464)
+..
T Consensus 232 L~~ 234 (268)
T 2fv2_A 232 LRQ 234 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 102
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.25 E-value=0.11 Score=58.05 Aligned_cols=172 Identities=12% Similarity=0.083 Sum_probs=107.0
Q ss_pred ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHh---hcCChhhHHHHHHHHHHHhcC-cchHHHHHHcCCHH
Q 012413 270 KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLL---IYGSSRGKKDALTTLYKLCSL-KQNKERAVSAGAVR 345 (464)
Q Consensus 270 ~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL---~~~~~~v~~~A~~aL~nL~~~-~~~~~~iv~~g~v~ 345 (464)
...+...++.++++++.++..-... ....++.++..+ .++++.++..++++++.++.. ..+. .+. ...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence 4567788999999999998762110 122345555554 235788999999999998873 2222 233 35889
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh--cCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcC-HHhHHH
Q 012413 346 PLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE--ENGIAALVEAIED--GSVKGKEFAVLTLLQLCAES-VKNRGL 420 (464)
Q Consensus 346 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~-~~~~~~ 420 (464)
.|+..|.+ +.++..|+.+|.+++.. .+..+.. ...+..|..++.. -+...+..+..+++.++... +.....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99998865 78999999999999941 2222221 2345556666664 36788999999999988643 233333
Q ss_pred HHHcCChHHHHHhhh----cC-CHHHHHHHHHHHHHh
Q 012413 421 LVREGGIPPLVALSQ----TG-SVRAKHKAETLLGYL 452 (464)
Q Consensus 421 i~~~g~i~~Lv~lL~----s~-~~~v~~~A~~aL~~L 452 (464)
.. ...++++...+. .. +++.+.....++..|
T Consensus 609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 22 234555555443 22 555555444444333
No 103
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.25 E-value=0.0085 Score=62.03 Aligned_cols=186 Identities=16% Similarity=0.098 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT 271 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 271 (464)
.||+.|+++|+.+ .+-+.- ..++..|+..+..+..+++..++..|..+ . +.... -.+.++.++..|++
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~~--Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVED--KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCCC--HHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHHH--HHHHHHHHHhhcCC
Confidence 5899999999999 664432 34555555556778899999999999998 1 11100 24578889999999
Q ss_pred CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHH
Q 012413 272 GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVG 349 (464)
Q Consensus 272 ~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~ 349 (464)
.+.+|+..|+.+|.-++ .++.... .+..+.++|.+- -..........|+.|+..+... -.....+|.|.-
T Consensus 311 ~DDDVRAVAAetLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~P 382 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFP 382 (800)
T ss_dssp SSHHHHHHHHHHHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGG
T ss_pred cccHHHHHHHHHhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHh
Confidence 99999999999999987 2221111 234444555543 2334556677788887755321 112368899999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHH-HHHHhcCCHHHHHHHHHHH
Q 012413 350 MLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAAL-VEAIEDGSVKGKEFAVLTL 407 (464)
Q Consensus 350 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L-v~lL~~~~~~v~~~A~~aL 407 (464)
++.+.-+.||..++.+|..+.. ...+..+ .++|-+.+++++..+..+-
T Consensus 383 FLRHtITSVR~AVL~TL~tfL~----------~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLSE----------ESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCCC----------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999999999999987771 1122222 2334467777777666655
No 104
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.23 E-value=0.33 Score=47.25 Aligned_cols=241 Identities=13% Similarity=0.058 Sum_probs=166.9
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-chH----HHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE-NNK----TLITNAGAIKSLVYVLKT-GTETSKQNAACALMS 286 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~-~~~----~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~ 286 (464)
+.+...+.+..|+..|..=+.+.|..++.+..++.... +.+ ..+.. --..|..++.. +++++-..+-..|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 44556799999999999999999999999999997753 322 22332 22223333322 355666677777777
Q ss_pred hcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHc---CCHHHHHHhhcCCCHHHHHHH
Q 012413 287 LALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSA---GAVRPLVGMLAGQGEGMAEKA 362 (464)
Q Consensus 287 Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~---g~v~~Lv~lL~~~~~~v~~~A 362 (464)
...++.....+...+.+-.+.+.+..++=++...|..++..|-. |+.....++.. ..+...-.+|.+++--.+..+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 77888777777787788889999998898999999999988755 66655565542 245667788888888889999
Q ss_pred HHHHHHHhCCHhhHHHHHh----cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---CHHhHHHHHHc--CChHHHHHh
Q 012413 363 MVVLSLLAGIAEGREAIVE----ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE---SVKNRGLLVRE--GGIPPLVAL 433 (464)
Q Consensus 363 ~~aL~nLa~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~--g~i~~Lv~l 433 (464)
+..|+.|-....+...+.. ..-+..++.+|++.+..+|-.|-.+.--..+. ++.-...+... ..+..|-++
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f 309 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF 309 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 9999999976666555443 45799999999999999999999998887765 33334444442 334444444
Q ss_pred hhcC--CHHHHHHHHHHHHHhhcC
Q 012413 434 SQTG--SVRAKHKAETLLGYLREP 455 (464)
Q Consensus 434 L~s~--~~~v~~~A~~aL~~L~~~ 455 (464)
..+. ++.-...=.-.++.|.+-
T Consensus 310 ~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 310 QNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp TTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred CCCCcchhhHHHHHHHHHHHHHhC
Confidence 4333 333333333444544443
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.03 E-value=0.18 Score=51.30 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=97.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCc
Q 012413 182 CIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGA 261 (464)
Q Consensus 182 Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~ 261 (464)
++.. ..+++..++-|++.+....++-|.+.. .++..++.+.++++..||..|...|-.+|++ +.... .
T Consensus 34 Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----i 101 (507)
T 3u0r_A 34 ILDG-VKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----V 101 (507)
T ss_dssp HHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----H
T ss_pred HHHh-cCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----H
Confidence 3443 345789999999999999998787765 4788899999999999999999999999988 55444 4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHH
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKL 328 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL 328 (464)
+..|+++|+.+++.-....-.+|..|-..+ ..+.+..|..-+..++..+|..++..|..=
T Consensus 102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 567999999998876666666666653211 134566677666677888888888877543
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.94 E-value=0.059 Score=51.08 Aligned_cols=178 Identities=11% Similarity=0.031 Sum_probs=120.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHH----HccCCHHHHHHHHHHHHHhccc---ccc
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYV----LKTGTETSKQNAACALMSLALI---EEN 293 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~l----L~~~~~~v~~~a~~aL~~Ls~~---~~~ 293 (464)
=+.+...|.+.+..-+..|+..|...... +...+.. .+..+++. +.+.+..+...++.+|..+... .+.
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456666677777788888887775431 1111111 23333443 3377888888888888876432 111
Q ss_pred hhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHHHHhc-CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC
Q 012413 294 KSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG 371 (464)
Q Consensus 294 ~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 371 (464)
+-.-.+ .-.+|.|++-+.+....+|..+-.++..++. .+. ...++.++.-+++.+..++..++..+..+-.
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 111111 2357999999999999999999888877765 222 2256778888899999999999999988863
Q ss_pred CHhhHHHHHhcCcH---HHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 372 IAEGREAIVEENGI---AALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 372 ~~~~~~~i~~~g~i---~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
..... ...++ +.+..++.+.+..||..|..++..+..+
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 21111 24578 9999999999999999999999877653
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.42 E-value=0.14 Score=47.30 Aligned_cols=144 Identities=15% Similarity=0.017 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHhcC--CCchH
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVP-LLKCSDPWTQEHSVTALLNLSL--HENNK 253 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~-lL~~~~~~v~~~A~~aL~~La~--~~~~~ 253 (464)
..++....+.+++...||..|+..|+.+ .. ....++.+.. +-.++.-.|++.++.++..++. +++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3333334455677789999999988766 21 1235566666 5556888999999999998874 333
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhc-Cc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCS-LK 332 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~-~~ 332 (464)
..++.+...+++++..+|..|...+.--+..+..+ .-..-.+|.|-.+..+++..|++...+.|..+++ +|
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 26788899999999999999988875422221100 0001135555566677788999999999999999 55
Q ss_pred chHHHHHH
Q 012413 333 QNKERAVS 340 (464)
Q Consensus 333 ~~~~~iv~ 340 (464)
+-...+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 108
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.27 E-value=1.1 Score=50.39 Aligned_cols=247 Identities=13% Similarity=0.031 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCC---CHHHHHHHHHHHHHhcC--CCc----hHHHHHhc
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCS---DPWTQEHSVTALLNLSL--HEN----NKTLITNA 259 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~---~~~v~~~A~~aL~~La~--~~~----~~~~i~~~ 259 (464)
.++..|..|-..|..+-+. .+++.....+|.+. ++.+|..|+.+|.+... +++ .+..+. .
T Consensus 20 sd~~~r~~A~~~L~~~q~s----------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-~ 88 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSS----------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-D 88 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHS----------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHHHcC----------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH-H
Confidence 4789999999999666543 35666777778663 78999999999988765 233 332222 2
Q ss_pred CcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCCh-hhHHHHHHHHHHHhcC------
Q 012413 260 GAIKSLVYVL-KTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSS-RGKKDALTTLYKLCSL------ 331 (464)
Q Consensus 260 g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~A~~aL~nL~~~------ 331 (464)
..+..+...- ..+...++...+.+|..+....-. -...+.++.|+.++..++. ......+++|..|...
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 2333333310 023567899999999998765210 1346678889999887554 3445556666633321
Q ss_pred ---cc--h-----HHHHHHcC---CHHHHHHhhc----CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhc
Q 012413 332 ---KQ--N-----KERAVSAG---AVRPLVGMLA----GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIED 394 (464)
Q Consensus 332 ---~~--~-----~~~iv~~g---~v~~Lv~lL~----~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 394 (464)
++ . ++.+.+.. +++....+|. ..++.++..++.+|......-. ...+.+.+.++.+..++.+
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~ 244 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI 244 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC
Confidence 00 1 22232210 1333444443 3567788888888888775322 3455667788888888865
Q ss_pred CCHHHHHHHHHHHHHHhhcC--HHhHHHHHHcCChHHHHHhhh--cCCHHHHHHHHHHHHHh
Q 012413 395 GSVKGKEFAVLTLLQLCAES--VKNRGLLVREGGIPPLVALSQ--TGSVRAKHKAETLLGYL 452 (464)
Q Consensus 395 ~~~~v~~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~--s~~~~v~~~A~~aL~~L 452 (464)
+.++..|+.||..+.... +..+..+++.=.+...+..+. .++.+..++-++.+..+
T Consensus 245 --~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ 304 (980)
T 3ibv_A 245 --EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQ 304 (980)
T ss_dssp --HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 899999999999998763 344443333211122222222 35666665555555433
No 109
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.20 E-value=0.35 Score=54.76 Aligned_cols=231 Identities=10% Similarity=-0.003 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc---CchhHHHHHh--cCChHHHHHhhcCC-------------------C
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKN---RSDNRVLIGE--SGAVPALVPLLKCS-------------------D 232 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~---~~~~r~~i~~--~g~i~~Ll~lL~~~-------------------~ 232 (464)
..++.++.....++.++...++.....++.+ .+..+..+.. ...++.++..+..+ +
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 3566666666777888888888887777652 0111111110 12344444443221 1
Q ss_pred H---HHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHc--cCCHHHHHHHHHHHHHhcccc-cchhhhhccCChHHH
Q 012413 233 P---WTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLK--TGTETSKQNAACALMSLALIE-ENKSSIGACGAIPPL 306 (464)
Q Consensus 233 ~---~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~L 306 (464)
. ..+..+..+|..++..... .+. .-..+.|-..+. ..+...+..++++++.++..- +....-.-...++.|
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~~--~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l 500 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNVI--DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDL 500 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH--HHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHH--HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH
Confidence 1 2344566666666521110 000 001233333443 256788999999999997541 110100011123333
Q ss_pred HHHhhc-----CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHH-
Q 012413 307 VSLLIY-----GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIV- 380 (464)
Q Consensus 307 i~lL~~-----~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~- 380 (464)
+.+... +.+.++..++++++..+..-.....+.. .+++.++..|.+.++.++..|+.++.+++.. .+..+.
T Consensus 501 ~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~--~~~~l~~ 577 (1049)
T 3m1i_C 501 LDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVI 577 (1049)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH--HTHHHHS
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 333221 2333444688888877653111122222 2677888888888899999999999999963 223333
Q ss_pred ---------hcCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 381 ---------EENGIAALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 381 ---------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
-...+..+..++..-+.+-......+++.+...
T Consensus 578 ~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 578 QQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp CCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 122344445555555565667777787777654
No 110
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.94 E-value=0.4 Score=46.31 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=77.1
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHhcCCCchHHHHHh--cCcHHHHHHHHccCCHHHHHHHHHHHHHhcccc-cchhhhhcc
Q 012413 225 VPLLKC-SDPWTQEHSVTALLNLSLHENNKTLITN--AGAIKSLVYVLKTGTETSKQNAACALMSLALIE-ENKSSIGAC 300 (464)
Q Consensus 225 l~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~ 300 (464)
+..+.. ..+..+..++++++|+-.++..++.+.. ...++.+...+.+.+..++..++..+.|++... ..+..=...
T Consensus 153 ~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~ 232 (304)
T 3ebb_A 153 INLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA 232 (304)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH
Confidence 344433 4577799999999999999888887765 234555555656678999999999999998642 111100001
Q ss_pred CChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHH
Q 012413 301 GAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQNKERAVS 340 (464)
Q Consensus 301 g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~iv~ 340 (464)
..+..+.+++.. .+.+....++-+|++|...+.....+.+
T Consensus 233 ~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak 273 (304)
T 3ebb_A 233 QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAK 273 (304)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 123344444543 4888999999999999986554444444
No 111
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.78 E-value=0.18 Score=56.97 Aligned_cols=139 Identities=8% Similarity=-0.076 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcH
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-----SDPWTQEHSVTALLNLSLH-ENNKTLITNAGAI 262 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-----~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i 262 (464)
.++..++.++++++.++..-......-.=..+++.|+.++++ +.+.++..++++|+..+.- ..... + =...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHHHH
Confidence 689999999999999997744322211123577888888864 3345667888999887641 00111 1 12245
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhc------cCChHHHHHHhh----cCChhhHHHHHHHHHHHhcC
Q 012413 263 KSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGA------CGAIPPLVSLLI----YGSSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 263 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~------~g~i~~Li~lL~----~~~~~v~~~A~~aL~nL~~~ 331 (464)
..|+..+.++++.++..||+++.+|+.. .+..+.. ...++.++..+. .-+..-+..+..+++.+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5566667777899999999999999864 2222321 113455544333 34666777888889888874
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.71 E-value=1.1 Score=50.64 Aligned_cols=204 Identities=12% Similarity=0.084 Sum_probs=127.5
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhcC-
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC----SDPWTQEHSVTALLNLSL- 248 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~----~~~~v~~~A~~aL~~La~- 248 (464)
+..+.+..+.+++.+......+ |+.+|......... ....+..+..++++ .++.++..|..+++.|..
T Consensus 353 GT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~P------t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k 425 (1056)
T 1lsh_A 353 ATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQA------TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFR 425 (1056)
T ss_dssp CSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCC------CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCC------CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHH
Confidence 4467777777777765433322 44444332221111 22345566677765 567888888888888853
Q ss_pred ---CCchHHHHHhcCcHHHH----HHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-----C--C
Q 012413 249 ---HENNKTLITNAGAIKSL----VYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-----G--S 314 (464)
Q Consensus 249 ---~~~~~~~i~~~g~i~~L----v~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-----~--~ 314 (464)
+... +....++.+ .+.+...+.+-+..++.+|+|+.. ...++.|..++.. . .
T Consensus 426 ~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l~~~l~~~~~~~~~~~ 491 (1056)
T 1lsh_A 426 YCANTVS----CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYS 491 (1056)
T ss_dssp HHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSC
T ss_pred HhccCCC----CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHHHHhhcCccccccccc
Confidence 1111 111234444 445566788889999999999832 3457777777742 1 3
Q ss_pred hhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHH
Q 012413 315 SRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGML--AGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAI 392 (464)
Q Consensus 315 ~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL--~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL 392 (464)
..++..|+++|..++...... +-+.|..+. ...+.++|..|+.+|-.-.-. ...+..+...+
T Consensus 492 ~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~---------~~~l~~ia~~l 555 (1056)
T 1lsh_A 492 TRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPS---------VALVSMVAVRL 555 (1056)
T ss_dssp HHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC---------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC---------HHHHHHHHHHH
Confidence 457888999999987632211 335677777 455688888888777533211 23566777777
Q ss_pred hc-CCHHHHHHHHHHHHHHhhcC
Q 012413 393 ED-GSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 393 ~~-~~~~v~~~A~~aL~~L~~~~ 414 (464)
.. .+.+|.......|.+|+...
T Consensus 556 ~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 556 RREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTCC
T ss_pred hhCchHHHHHHHHHHHHHHHhcC
Confidence 74 68899998888888888653
No 113
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.54 E-value=0.7 Score=42.70 Aligned_cols=142 Identities=11% Similarity=-0.020 Sum_probs=99.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhcc--cccchhhh
Q 012413 221 VPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVY-VLKTGTETSKQNAACALMSLAL--IEENKSSI 297 (464)
Q Consensus 221 i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~i 297 (464)
++....+.+++..++|..|+.+|+.+ . + ....++.+.. +-.+++-.|++.++.++..++. +++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~-~-------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S-K-------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T-T-------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c-C-------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 34455666778789999999999887 2 1 1225566665 5556788999999999999864 222
Q ss_pred hccCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhhH
Q 012413 298 GACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEGR 376 (464)
Q Consensus 298 ~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~~ 376 (464)
..++.+...+.+++..+|+.|...+.--+..+..+ .--.-+++.|-.+..++...|+...+++|..++. +|+-.
T Consensus 139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 25788999999999999999998875423221110 0011256777777788889999999999999994 56554
Q ss_pred HHHHh
Q 012413 377 EAIVE 381 (464)
Q Consensus 377 ~~i~~ 381 (464)
..+++
T Consensus 214 ~~~~~ 218 (240)
T 3l9t_A 214 KIELK 218 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.51 E-value=1.3 Score=45.23 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHH
Q 012413 231 SDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSL 309 (464)
Q Consensus 231 ~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~l 309 (464)
.++..++-|+..+...-++ |+.... ++..++.++.+++..+|.+|...|..+|.+ +....+ ...|++|
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHH
Confidence 4688888899988888775 665443 788899999999999999999999999988 554444 6788999
Q ss_pred hhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 310 LIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 310 L~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
|..+++.-...+-.+|..|...+. .+.+..|...+...++.+++.++..|..=.
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 999888777777777777655221 235555555555567888888887775433
No 115
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.92 E-value=0.68 Score=42.76 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHhcccccchhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc--h-HHHHH---------
Q 012413 273 TETSKQNAACALMSLALIEENKSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ--N-KERAV--------- 339 (464)
Q Consensus 273 ~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~--~-~~~iv--------- 339 (464)
+...+..++.+|..+.....+...+.. .+++..|+..|.++++.++..++..|..+|..++ + ...+.
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 456778889999998877666555554 6789999999998999999999999999998553 5 54443
Q ss_pred -HcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCH---hh----HHHHHhcCcHHHHHHHHh-cCCHHHHH
Q 012413 340 -SAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIA---EG----REAIVEENGIAALVEAIE-DGSVKGKE 401 (464)
Q Consensus 340 -~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~---~~----~~~i~~~g~i~~Lv~lL~-~~~~~v~~ 401 (464)
+..-+..++..++. ...+.+..++..+-.|...+ +. |..+...| +..+++-++ ..++.+..
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMKV 217 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHCCCHHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCCHHHHH
Confidence 23356778888864 33455555555555555433 22 44444555 444455555 35555443
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.82 E-value=1.6 Score=49.45 Aligned_cols=167 Identities=13% Similarity=0.065 Sum_probs=97.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHcc----CCHHHHHHHHHHHHHhcccccchh
Q 012413 220 AVPALVPLLKCSDPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKT----GTETSKQNAACALMSLALIEENKS 295 (464)
Q Consensus 220 ~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~Ls~~~~~~~ 295 (464)
++..+.+++.+.+....+ |+.+|..+...... ....+..+..++++ .++.++..+..+++.|....-...
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~P-----t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~ 430 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQA-----TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT 430 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCC-----CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCC-----CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 355566666665433322 44444332221111 11245666677765 467788888888888764310000
Q ss_pred hhhccCChHHHHHHh----hcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcC-------CCHHHHHHHHH
Q 012413 296 SIGACGAIPPLVSLL----IYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG-------QGEGMAEKAMV 364 (464)
Q Consensus 296 ~i~~~g~i~~Li~lL----~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~-------~~~~v~~~A~~ 364 (464)
.......++.+.+.| ...+..-+..++.+|+|+... ..++.|..++.. ....++..|++
T Consensus 431 ~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ 500 (1056)
T 1lsh_A 431 VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIM 500 (1056)
T ss_dssp SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHH
Confidence 011223355555554 456777788899999998642 256677777642 23467889999
Q ss_pred HHHHHhCCHhhHHHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 012413 365 VLSLLAGIAEGREAIVEENGIAALVEAIE--DGSVKGKEFAVLTLLQ 409 (464)
Q Consensus 365 aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~~ 409 (464)
+|..++.... ..+-+.|+++.. ..+.++|..|...|..
T Consensus 501 ALr~~~~~~p-------~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 501 ALRNIAKRDP-------RKVQEIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp TTTTGGGTCH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhch-------HHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999984311 123445667774 4678888888888754
No 117
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.80 E-value=2.9 Score=41.61 Aligned_cols=144 Identities=18% Similarity=0.199 Sum_probs=99.1
Q ss_pred HHHHhcCChHHHHHhhc-----------CCCHHHHHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHH
Q 012413 213 VLIGESGAVPALVPLLK-----------CSDPWTQEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNA 280 (464)
Q Consensus 213 ~~i~~~g~i~~Ll~lL~-----------~~~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a 280 (464)
+.+. .+|+..|+..|. ..+...+..++.+|..+..+..+...+.. ..++..|+..|.+..+.++..+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 4444 567888888774 23457888999999999888766666665 7789999999999999999999
Q ss_pred HHHHHHhccccc--c-hhhh----------hccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcch-------HHHHH
Q 012413 281 ACALMSLALIEE--N-KSSI----------GACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQN-------KERAV 339 (464)
Q Consensus 281 ~~aL~~Ls~~~~--~-~~~i----------~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~-------~~~iv 339 (464)
+..|..+|..++ + ...+ .+..-+..++..|.+ .+.+.+.+++..+-.+...++. +..+.
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 262 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM 262 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999998887643 2 2222 334568889999987 4667777777777666665432 23344
Q ss_pred HcCCHHHHHHhhcCC-CHHH
Q 012413 340 SAGAVRPLVGMLAGQ-GEGM 358 (464)
Q Consensus 340 ~~g~v~~Lv~lL~~~-~~~v 358 (464)
..|..+.+-. |+.. ++++
T Consensus 263 ~~Gl~~il~~-lr~~~~~~L 281 (383)
T 3eg5_B 263 RLGLHQVLQE-LREIENEDM 281 (383)
T ss_dssp HTTHHHHHHH-HTTSCCHHH
T ss_pred HCChHHHHHH-HhcCCChhH
Confidence 5655555544 5543 4433
No 118
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.58 E-value=3.8 Score=37.62 Aligned_cols=142 Identities=17% Similarity=0.181 Sum_probs=94.9
Q ss_pred hcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHH
Q 012413 217 ESGAVPALVPLLKC-----------SDPWTQEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACAL 284 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~-----------~~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL 284 (464)
..+|+..|+..|.. .+.+.+..++.+|..+..+..+...+.. .+++..|+..|.+++..++..++..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 35677777776643 1457788999999999888776666665 77899999999999999999999999
Q ss_pred HHhccccc--c-hhhh----------hccCChHHHHHHhhc-CChhhHHHHHHHHHHHhcCcch-------HHHHHHcCC
Q 012413 285 MSLALIEE--N-KSSI----------GACGAIPPLVSLLIY-GSSRGKKDALTTLYKLCSLKQN-------KERAVSAGA 343 (464)
Q Consensus 285 ~~Ls~~~~--~-~~~i----------~~~g~i~~Li~lL~~-~~~~v~~~A~~aL~nL~~~~~~-------~~~iv~~g~ 343 (464)
..+|..++ + ...+ .+..-+..+++.+.+ .+.+.+..++..+-.+...++. +..+...|.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88887643 4 3333 233467788888875 3556666666666666665432 233445555
Q ss_pred HHHHHHhhcCCCHHH
Q 012413 344 VRPLVGMLAGQGEGM 358 (464)
Q Consensus 344 v~~Lv~lL~~~~~~v 358 (464)
.+.+-.+=...++++
T Consensus 201 ~~il~~l~~~~~~~L 215 (233)
T 2f31_A 201 HQVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhccCCHHH
Confidence 444443333344443
No 119
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.48 E-value=1.2 Score=50.44 Aligned_cols=221 Identities=12% Similarity=0.069 Sum_probs=136.4
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhcCC-----
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLK-CSDPWTQEHSVTALLNLSLH----- 249 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~-~~~~~v~~~A~~aL~~La~~----- 249 (464)
...+..++..+.+++...|..|-..|..+-+. .+++..+..+|. +.++.+|..|+..|.+....
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~----------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQDN----------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS----------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC----------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence 34555556666677778898898888766443 255666666664 46889999999999997642
Q ss_pred -CchHHHHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHH
Q 012413 250 -ENNKTLITNAGAIKSLVYVLKTG-----TETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALT 323 (464)
Q Consensus 250 -~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~ 323 (464)
++.+..+. ...+..+...-..+ +..++...+.++..++..+-- -...+.++.|++++. .+...+..++.
T Consensus 85 ~~~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~Wp~ll~~L~~~~~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 85 PNDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNWPEFIPELIGSSS-SSVNVCENNMI 159 (1049)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHHc-cChHHHHHHHH
Confidence 23333322 22333333322111 367888999999998765211 024567889999886 55556777788
Q ss_pred HHHHHhcC-c----c----hH-----HHHHH--cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHH
Q 012413 324 TLYKLCSL-K----Q----NK-----ERAVS--AGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIAEGREAIVEENGIA 386 (464)
Q Consensus 324 aL~nL~~~-~----~----~~-----~~iv~--~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~ 386 (464)
+|..|+.. . + .+ ..+.+ ...++.+..++.. .+..++..++.++......-. ...+.+...++
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~ 238 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNILE 238 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHH
Confidence 88777641 1 0 11 22222 1123334444543 346788889999987764322 12245566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 387 ALVEAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 387 ~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
.+.+.+. .++.++..|+.+|..+...
T Consensus 239 ~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 239 LLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 6663332 2788899999999988865
No 120
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.40 E-value=1.7 Score=48.80 Aligned_cols=264 Identities=9% Similarity=-0.018 Sum_probs=135.6
Q ss_pred CCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCCC---chHHHHHhcCcHH
Q 012413 187 QSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLHE---NNKTLITNAGAIK 263 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~~---~~~~~i~~~g~i~ 263 (464)
.+.++.++..++.+|.....--+ -..+.+.+.++.+..+|.+ ++++..|+.+|..+.... +.+..+...=.+.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~ 278 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 278 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence 34788899999999987765322 2456667888888888865 899999999999987632 3333333221112
Q ss_pred HHHHHHc--cCCHHHHHHHHHHHHHhccc-------c-----cchhhhhc--cCChHHHHHHhhcCChhhHHHHHHHHHH
Q 012413 264 SLVYVLK--TGTETSKQNAACALMSLALI-------E-----ENKSSIGA--CGAIPPLVSLLIYGSSRGKKDALTTLYK 327 (464)
Q Consensus 264 ~Lv~lL~--~~~~~v~~~a~~aL~~Ls~~-------~-----~~~~~i~~--~g~i~~Li~lL~~~~~~v~~~A~~aL~n 327 (464)
..+..+. .+|.+..+..+..+..++.. + +.+..... .+.++.++.++.+++.++-..++..+..
T Consensus 279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~ 358 (980)
T 3ibv_A 279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSD 358 (980)
T ss_dssp HHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 2222222 45666655444444333211 1 00111111 3578888888888887877776666655
Q ss_pred HhcCcc-------hHHHHHH--cCCHHHHHHhhcCCC------------H----HHHHHHHHHHHHHh-CCHhhHHHHHh
Q 012413 328 LCSLKQ-------NKERAVS--AGAVRPLVGMLAGQG------------E----GMAEKAMVVLSLLA-GIAEGREAIVE 381 (464)
Q Consensus 328 L~~~~~-------~~~~iv~--~g~v~~Lv~lL~~~~------------~----~v~~~A~~aL~nLa-~~~~~~~~i~~ 381 (464)
+..... ....+.. ...++.++.-+.-+. . +.|......+..++ -.++..-...-
T Consensus 359 ~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 359 LLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 543210 1111111 113444444443211 0 12333332222222 11211111000
Q ss_pred cCcHHHHHHHHh---cCCHHHHHHHHHHHHHHhhcCHHhHHHH-HHcC----ChHHHHHhhh-----cCCHHHHHHHHHH
Q 012413 382 ENGIAALVEAIE---DGSVKGKEFAVLTLLQLCAESVKNRGLL-VREG----GIPPLVALSQ-----TGSVRAKHKAETL 448 (464)
Q Consensus 382 ~g~i~~Lv~lL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i-~~~g----~i~~Lv~lL~-----s~~~~v~~~A~~a 448 (464)
.-..+.+-+.+. +.+-...+.|+.+|+.++..-......+ -+.. .++.|..++. .+++.|+..+.++
T Consensus 439 ~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~ 518 (980)
T 3ibv_A 439 SAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEI 518 (980)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 011111222221 2346678899999999886432111000 0011 3345555555 5789999999999
Q ss_pred HHHhhc
Q 012413 449 LGYLRE 454 (464)
Q Consensus 449 L~~L~~ 454 (464)
++..++
T Consensus 519 l~rys~ 524 (980)
T 3ibv_A 519 LVRYAS 524 (980)
T ss_dssp HHHTGG
T ss_pred HHHHHH
Confidence 988765
No 121
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.07 E-value=1.3 Score=50.79 Aligned_cols=247 Identities=11% Similarity=-0.004 Sum_probs=137.4
Q ss_pred CCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHhcCC------CchHHHHHhcC
Q 012413 189 SSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLL--KCSDPWTQEHSVTALLNLSLH------ENNKTLITNAG 260 (464)
Q Consensus 189 ~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL--~~~~~~v~~~A~~aL~~La~~------~~~~~~i~~~g 260 (464)
.+...|..|-..|..+-++. .+...+...| .+.++.+|..|+..|.+.... ++.+..|. ..
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ 93 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NS 93 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HH
T ss_pred CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HH
Confidence 37788999998886664431 2444444433 456889999999999987532 23333322 22
Q ss_pred cHHHHHHHHc---cCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHHHHHHhcC---c--
Q 012413 261 AIKSLVYVLK---TGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL---K-- 332 (464)
Q Consensus 261 ~i~~Lv~lL~---~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~---~-- 332 (464)
.+..+...-. .....++...+.++..|+..+-- -...+.++.|++++.+ +...+..++.+|..|+.. .
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence 3333332211 14578999999999998766311 0246778888888876 555677788888888652 1
Q ss_pred --chH-----HHHHHc--CCHHHHHHhhcCC-------------------CHHHHHHHHHHHHHHhCCHhhHHHHHhcC-
Q 012413 333 --QNK-----ERAVSA--GAVRPLVGMLAGQ-------------------GEGMAEKAMVVLSLLAGIAEGREAIVEEN- 383 (464)
Q Consensus 333 --~~~-----~~iv~~--g~v~~Lv~lL~~~-------------------~~~v~~~A~~aL~nLa~~~~~~~~i~~~g- 383 (464)
..+ ..+.+. .+++.+..++... ...+...++.++.+...... ...+.+..
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-~~~i~~~~~ 248 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS-MSHITAENC 248 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC-HHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC-HHHHHhccc
Confidence 111 112211 1233333334321 12244455555554443211 12333332
Q ss_pred -cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--HHhHHHHHHc---CChHHHHHhhh--------cCCHHHHHHHHHHH
Q 012413 384 -GIAALVEAIEDGSVKGKEFAVLTLLQLCAES--VKNRGLLVRE---GGIPPLVALSQ--------TGSVRAKHKAETLL 449 (464)
Q Consensus 384 -~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~--~~~~~~i~~~---g~i~~Lv~lL~--------s~~~~v~~~A~~aL 449 (464)
.++.+..++. ++.++..|+.||..+.... +..+..+... ..+..++..+. ..+.++.++-++++
T Consensus 249 ~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll 326 (1204)
T 3a6p_A 249 KLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVL 326 (1204)
T ss_dssp HHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHH
Confidence 5666665554 5778999999999999754 3333322221 11334444442 11346666777676
Q ss_pred HHhh
Q 012413 450 GYLR 453 (464)
Q Consensus 450 ~~L~ 453 (464)
..++
T Consensus 327 ~~lg 330 (1204)
T 3a6p_A 327 CALG 330 (1204)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 122
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.03 E-value=1.6 Score=43.52 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=93.8
Q ss_pred cCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcccccchhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHH
Q 012413 259 AGAIKSLVYVLKT-----------GTETSKQNAACALMSLALIEENKSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLY 326 (464)
Q Consensus 259 ~g~i~~Lv~lL~~-----------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~ 326 (464)
.+|+..|+.+|.. .+...+..++.+|..+..+..+...+.. ...|..|+..|.+.++.++..++.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5677777777742 2457788899999999877666555554 778999999999999999999999999
Q ss_pred HHhcCcc--h-HHHHH----------HcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCH---hh----HHHHHhcCcH
Q 012413 327 KLCSLKQ--N-KERAV----------SAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIA---EG----REAIVEENGI 385 (464)
Q Consensus 327 nL~~~~~--~-~~~iv----------~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~---~~----~~~i~~~g~i 385 (464)
.+|..++ + ...++ +..-+..++..|.. ...+.+..++..+-.+...+ +. |..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9998553 3 44443 23457888888876 34555665666555555432 22 4444455544
Q ss_pred HHHHHHHhc-CCHHH
Q 012413 386 AALVEAIED-GSVKG 399 (464)
Q Consensus 386 ~~Lv~lL~~-~~~~v 399 (464)
+ +++-++. .++.+
T Consensus 268 ~-il~~lr~~~~~~L 281 (383)
T 3eg5_B 268 Q-VLQELREIENEDM 281 (383)
T ss_dssp H-HHHHHTTSCCHHH
T ss_pred H-HHHHHhcCCChhH
Confidence 4 4445664 34443
No 123
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=92.84 E-value=3.3 Score=46.87 Aligned_cols=221 Identities=13% Similarity=0.028 Sum_probs=140.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhcCC-----
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLSLH----- 249 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La~~----- 249 (464)
...+..++..+.+++...|..|-..|..+-++ .+++..+..+|.. .++.+|..|+..|.+....
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s----------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L 96 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH----------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKIL 96 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC----------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhC
Confidence 46788888999999999999998888655443 2455556666655 6899999999999997652
Q ss_pred CchHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChhhHHHHHHH
Q 012413 250 ENNKTLITNAGAIKSLVYVLKT-----GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSRGKKDALTT 324 (464)
Q Consensus 250 ~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~A~~a 324 (464)
++....-.+...+..+...-.. .++.++...+.++..++...--. ...+.++.++.++.. ++......+.+
T Consensus 97 ~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~I 172 (1073)
T 3gjx_A 97 PRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMVI 172 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 2222222333344555444332 35677888888898887652110 246678888888864 34556667777
Q ss_pred HHHHhcC--cc-------h-----HHHHHHc--CCHHHHHHhhc-CCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHH
Q 012413 325 LYKLCSL--KQ-------N-----KERAVSA--GAVRPLVGMLA-GQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAA 387 (464)
Q Consensus 325 L~nL~~~--~~-------~-----~~~iv~~--g~v~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~ 387 (464)
|..|... +- . ++.+.+. ..++.+..+|. ..++.+...++.+|+.+..--+ ...+++.+.++.
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKLIST 251 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchHHHH
Confidence 7777652 10 1 1222221 12233333443 3457777888899998885432 235677787887
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHHHhhc
Q 012413 388 LV-EAIEDGSVKGKEFAVLTLLQLCAE 413 (464)
Q Consensus 388 Lv-~lL~~~~~~v~~~A~~aL~~L~~~ 413 (464)
|+ .++ .++..+..|+.||..+...
T Consensus 252 L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 252 LIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 74 554 5688999999999999875
No 124
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.65 E-value=0.38 Score=54.35 Aligned_cols=140 Identities=10% Similarity=0.007 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhccccc-chhhhhccCChHHHHHHhhc-----CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHH
Q 012413 272 GTETSKQNAACALMSLALIEE-NKSSIGACGAIPPLVSLLIY-----GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVR 345 (464)
Q Consensus 272 ~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~Li~lL~~-----~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~ 345 (464)
.+...++.++++++.++.... ....-.-..+++.|+.++.+ +...++..++++|+..+..=.....+.. .++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 578999999999999987632 22222224467888888864 2344556777888877663211122222 2566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHh----------cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 012413 346 PLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVE----------ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAES 414 (464)
Q Consensus 346 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~----------~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~ 414 (464)
.|+..+.++++.++..|++++.+||. ..+..+.. ...+..+.+....-+..-+..+..+++.+....
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 67777777788999999999999995 23333432 112333444444456777788888888888753
No 125
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.96 E-value=5 Score=39.22 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhc-CCh
Q 012413 237 EHSVTALLNLSLHENNKTLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIY-GSS 315 (464)
Q Consensus 237 ~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~-~~~ 315 (464)
..+...|.-|-.+.+...-++..+|+..+....+.++.++....+..|...+.....+. .--...+|.+++++.- ++.
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h~eD 339 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIHPDD 339 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccCCCc
Confidence 34444444444456777889999999999999999999999999999998865432211 1114567888888875 588
Q ss_pred hhHHHHHHHHHHHhcCcc-hHHHHHHcCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHhC----------------
Q 012413 316 RGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLAGQ-------GEGMAEKAMVVLSLLAG---------------- 371 (464)
Q Consensus 316 ~v~~~A~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~lL~~~-------~~~v~~~A~~aL~nLa~---------------- 371 (464)
++.....+.|.|...++. -++..+..|+++.|-..+... +..-+..|+++++|--.
T Consensus 340 dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGq 419 (619)
T 3c2g_A 340 EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGE 419 (619)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSC
T ss_pred ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCc
Confidence 899999999999999885 556667899999998887432 12225555655555311
Q ss_pred ----CHhhHH---HHHhcCcHHHHHHHHhc
Q 012413 372 ----IAEGRE---AIVEENGIAALVEAIED 394 (464)
Q Consensus 372 ----~~~~~~---~i~~~g~i~~Lv~lL~~ 394 (464)
.+.-++ .+++...+..|+.+|.-
T Consensus 420 r~~~G~~EqQQVckFIE~d~LKrLMtCLS~ 449 (619)
T 3c2g_A 420 TKTAGPNEKQQVCKFIEIDILKKLMSCLSC 449 (619)
T ss_dssp CCCCCHHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111122 33455678888888874
No 126
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.90 E-value=5.2 Score=39.09 Aligned_cols=135 Identities=11% Similarity=0.035 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHh-cC
Q 012413 317 GKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIE-DG 395 (464)
Q Consensus 317 v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~-~~ 395 (464)
|...+...|.-|.-.....+-++..+|+..+...+..++.++....+..|...+.....+..-. ...++-++..+. ++
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC
Confidence 3445555555555555677889999999999999999999999999999998876443221111 245777777776 78
Q ss_pred CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcC-------CHHHHHHHHHHHHHh
Q 012413 396 SVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTG-------SVRAKHKAETLLGYL 452 (464)
Q Consensus 396 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-------~~~v~~~A~~aL~~L 452 (464)
++++.....+.|.|..++...-++..+..|+|..|...+... +..-+..|++++.+.
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 899999999999999999888888888999999999987542 235566666666543
No 127
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.79 E-value=10 Score=37.66 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=94.5
Q ss_pred cCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCCchHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHH
Q 012413 218 SGAVPALVPLLKC-----------SDPWTQEHSVTALLNLSLHENNKTLITN-AGAIKSLVYVLKTGTETSKQNAACALM 285 (464)
Q Consensus 218 ~g~i~~Ll~lL~~-----------~~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 285 (464)
.+|+..|+..|.. .+......++.+|..+..+..+...+.. .+++..|+..|.+.++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4667777766642 1467788999999999888766665554 778999999999999999999999888
Q ss_pred Hhccccc--c-hhhh----------hccCChHHHHHHhhcC-ChhhHHHHHHHHHHHhcCcch-------HHHHHHcCCH
Q 012413 286 SLALIEE--N-KSSI----------GACGAIPPLVSLLIYG-SSRGKKDALTTLYKLCSLKQN-------KERAVSAGAV 344 (464)
Q Consensus 286 ~Ls~~~~--~-~~~i----------~~~g~i~~Li~lL~~~-~~~v~~~A~~aL~nL~~~~~~-------~~~iv~~g~v 344 (464)
.+|..++ + ...+ .+..-+..++..+.+. +.+.+..++..+-.|...++. +..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8887643 3 2222 2345677888888743 566666666666666665442 2344456555
Q ss_pred HHHHHhhcC-CCHHH
Q 012413 345 RPLVGMLAG-QGEGM 358 (464)
Q Consensus 345 ~~Lv~lL~~-~~~~v 358 (464)
+.+ .-|+. .++.+
T Consensus 206 ~il-~~Lr~~~~~~L 219 (386)
T 2bnx_A 206 QVL-QELREIENEDM 219 (386)
T ss_dssp HHH-HHHTTCCCHHH
T ss_pred HHH-HHHhccCChhH
Confidence 554 44443 44444
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.23 E-value=3.5 Score=41.03 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHhcccccchhhhhc-cCChHHHHHHhhcCChhhHHHHHHHHHHHhcCcc--h-HHHHH---------
Q 012413 273 TETSKQNAACALMSLALIEENKSSIGA-CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSLKQ--N-KERAV--------- 339 (464)
Q Consensus 273 ~~~v~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~~~--~-~~~iv--------- 339 (464)
+......++.+|..|.....+...+.. ..++..|+..|.+.++.++..++..|..+|..++ + ...+.
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 456778889999998877655555554 6789999999988899999999999999998553 4 44432
Q ss_pred -HcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhCCHh-------hHHHHHhcCcHHHHHHHHhc-CCHHHH
Q 012413 340 -SAGAVRPLVGMLAG-QGEGMAEKAMVVLSLLAGIAE-------GREAIVEENGIAALVEAIED-GSVKGK 400 (464)
Q Consensus 340 -~~g~v~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~-------~~~~i~~~g~i~~Lv~lL~~-~~~~v~ 400 (464)
+..-+..++..+.. ...+.+..++..+-.|...++ .|..+...| +..+++-++. .++.+.
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-L~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMK 220 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTCCCHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCChhHH
Confidence 23466778888864 345556555655555554332 244455555 4445555554 445443
No 129
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=85.44 E-value=9.1 Score=36.61 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHhccCchhHHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHh--cCcHHHH
Q 012413 190 SVAIKRSAAAKLRLLAKNRSDNRVLIG-ESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITN--AGAIKSL 265 (464)
Q Consensus 190 ~~~vr~~A~~~L~~La~~~~~~r~~i~-~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~--~g~i~~L 265 (464)
+...-..|+..|-.++.+-...-+.+. +...+..|+ +.....+.+++.|+.+|+...++ |+....|.+ ...+..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 444567788888888876333333332 333444444 44557788999999999998875 666555554 4455555
Q ss_pred HHHHcc-------CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC--ChhhHHHHHHHHHHHhc
Q 012413 266 VYVLKT-------GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG--SSRGKKDALTTLYKLCS 330 (464)
Q Consensus 266 v~lL~~-------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~A~~aL~nL~~ 330 (464)
+.-|.. ....++..-+.+|-.|...+. .+ ...++..|++++... ++.++..++..+..+-.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 544433 345677777888888877652 22 245678899888877 88999999988877753
No 130
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=84.30 E-value=27 Score=39.94 Aligned_cols=255 Identities=13% Similarity=0.070 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcc-----CchhHHHHHhcCChHHHHHhhc---CCCHHHHHHHHHHHHHhcCCCchHHHHHh
Q 012413 187 QSSSVAIKRSAAAKLRLLAKN-----RSDNRVLIGESGAVPALVPLLK---CSDPWTQEHSVTALLNLSLHENNKTLITN 258 (464)
Q Consensus 187 ~s~~~~vr~~A~~~L~~La~~-----~~~~r~~i~~~g~i~~Ll~lL~---~~~~~v~~~A~~aL~~La~~~~~~~~i~~ 258 (464)
.+.++.+|..|+..|.+..+. +++.+..+ +...+..+...-. +..+.++...+.++..++..+-... =
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---W 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---W 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT---C
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc---c
Confidence 456788999999999877643 22333333 3334444443321 1458899999999999886421100 1
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccc---c----cch-----hhhhccCChHHHH----HHhhc----------
Q 012413 259 AGAIKSLVYVLKTGTETSKQNAACALMSLALI---E----ENK-----SSIGACGAIPPLV----SLLIY---------- 312 (464)
Q Consensus 259 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~---~----~~~-----~~i~~~g~i~~Li----~lL~~---------- 312 (464)
.+.++.|+.+++. ++..+..++.+|..|+.. . ..+ ..+.+. ++.++ .++.+
T Consensus 133 p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 133 PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 4678888888876 556677788888887643 1 111 112111 34443 33332
Q ss_pred ---------CChhhHHHHHHHHHHHhcCcchHHHHHHcC--CHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---HhhHHH
Q 012413 313 ---------GSSRGKKDALTTLYKLCSLKQNKERAVSAG--AVRPLVGMLAGQGEGMAEKAMVVLSLLAGI---AEGREA 378 (464)
Q Consensus 313 ---------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g--~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~~~~~~ 378 (464)
.+..++..++.++.+....-.. ..+++.. .++.+..++. ++.++..|+.+|..+... ++.+..
T Consensus 210 ~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~ 286 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKP 286 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGG
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHH
Confidence 1234566677777655543221 2223322 6677776665 356789999999999942 233333
Q ss_pred HHh---cCcHHHHHHHHh--------cCCHHHHHHHHHHHHHHhhcCHHhHHHHHH----------cCChHHHHHhhhcC
Q 012413 379 IVE---ENGIAALVEAIE--------DGSVKGKEFAVLTLLQLCAESVKNRGLLVR----------EGGIPPLVALSQTG 437 (464)
Q Consensus 379 i~~---~g~i~~Lv~lL~--------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~----------~g~i~~Lv~lL~s~ 437 (464)
++. ...+..++.... +.+.++...-+..+..++.. ....+.. .+.++.++.+..++
T Consensus 287 li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 287 LMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHP 363 (1204)
T ss_dssp GGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS
T ss_pred HHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCc
Confidence 332 112445555542 11345555666666666521 1111110 13467777777777
Q ss_pred CHHHHHHHHHHHHHhhc
Q 012413 438 SVRAKHKAETLLGYLRE 454 (464)
Q Consensus 438 ~~~v~~~A~~aL~~L~~ 454 (464)
+..+-..+...-..+.+
T Consensus 364 ~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 364 SQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cHHhHHHHHHHHHHHHh
Confidence 76766666554433433
No 131
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=83.72 E-value=17 Score=33.77 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=67.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCC-chHHHH
Q 012413 186 LQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKC--------SDPWTQEHSVTALLNLSLHE-NNKTLI 256 (464)
Q Consensus 186 L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~--------~~~~v~~~A~~aL~~La~~~-~~~~~i 256 (464)
+.+.++..+.-+++++.|+-.+..-.++.+........++..+.+ .+..++..++..+.|++..- ..+.
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 335678899999999999999855356666544334444544322 25678899999999997520 0000
Q ss_pred HhcCcHHHHHHHHcc---------CCHHHHHHHHHHHHHhccc
Q 012413 257 TNAGAIKSLVYVLKT---------GTETSKQNAACALMSLALI 290 (464)
Q Consensus 257 ~~~g~i~~Lv~lL~~---------~~~~v~~~a~~aL~~Ls~~ 290 (464)
+......++.++.. .+++....++-+|++|...
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 12344556666652 3778999999999998754
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.01 E-value=4.2 Score=35.25 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=59.4
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La 247 (464)
...++..|.+.|++.++.++..|+..|-.+.++. ......+.+...+..|+.++.. .++.|+..++..|..-+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3568888899999999999999999999998884 4456666667788888888876 67899999888876654
No 133
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=79.78 E-value=39 Score=31.37 Aligned_cols=108 Identities=9% Similarity=0.073 Sum_probs=74.4
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh--------c
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNL--------S 247 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~L--------a 247 (464)
...++.++..-.+.+.++|++.+..+...+...++.. ..+++.|..+|+++++.+.+.+..+..++ +
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666665567889999999999988886655432 35678888999999999999888876665 4
Q ss_pred CCCch---HHHHHh--cCcHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 012413 248 LHENN---KTLITN--AGAIKSLVYVLKTGTETSKQNAACALMSLA 288 (464)
Q Consensus 248 ~~~~~---~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls 288 (464)
.++.. .....+ ...=..++.++.+++..+|..+...+-.+-
T Consensus 127 ~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 43321 111111 122345666778889999999988776643
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=78.74 E-value=5.6 Score=33.84 Aligned_cols=72 Identities=10% Similarity=0.036 Sum_probs=60.5
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHhc
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC------SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~------~~~~v~~~A~~aL~~La 247 (464)
..++..|.+.|++.++.++..|+..|-.+.++. ......+.+...+..|+.++.. .++.|+..++..+..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 568888899999999999999999999999884 4566777778889999999864 47899999988887665
No 135
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=78.47 E-value=44 Score=33.44 Aligned_cols=194 Identities=12% Similarity=0.087 Sum_probs=107.5
Q ss_pred cCCCCccccchhhhhHHHhhhhhhhhccCCcccccCCcchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhc
Q 012413 58 VPDNSGYLSENLTESVIDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQ 136 (464)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~ 136 (464)
|+-+.-...++..-..|..-|.+++... ..++++.+..|.+++.+ ......-....+..+.+.|.
T Consensus 177 lP~~~yl~f~~~n~~~i~~kl~efN~~~-------~~ls~~el~~l~~~l~~~~~~~~~l~~~~~kil~~WP~------- 242 (425)
T 3pst_A 177 LPVKQYLIMENYNPDTILNGIVKINSNE-------KTFDDEILAQIGGALHDIDESWELLLSFANTIRSNWEI------- 242 (425)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHTSGGGSHHHHHHHHHHHHHHCSC-------
T ss_pred cCccceeeeecCCHHHHHHHHHHhcccc-------cCCCHHHHHHHHHHhccccccHHHHHHHHHHHHHhCCc-------
Confidence 3444433456665566666666666442 37999999999999876 22211111122333434441
Q ss_pred CcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH
Q 012413 137 PNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG 216 (464)
Q Consensus 137 ~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~ 216 (464)
..|.+ +++..+....... +.+...+. ..+.+..+..+.-++++|.|+-.+....+..+.
T Consensus 243 ---------~FPaL-DLLRl~v~~p~~~--------~~l~~li~---~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~ 301 (425)
T 3pst_A 243 ---------KTPAY-DIVRLIVKKLPYS--------SDIKDYIE---EGLGNKNITLTMLTVRILVNCFNNENWGVKLLE 301 (425)
T ss_dssp ---------CHHHH-HHHHHHGGGCSCG--------GGGHHHHH---HHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHT
T ss_pred ---------ccHHH-HHHHHHHcCCchH--------HHHHHHHH---HhcCCCChhHHHHHHHHHHHhcCCcchHHHHhh
Confidence 12222 1111111111000 01122222 234456788999999999999988443444443
Q ss_pred hcCChHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCC-chHHHHHhcCcHHHHHHHHc---------cCCHHHHH
Q 012413 217 ESGAVPALVPLLKC--------SDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLK---------TGTETSKQ 278 (464)
Q Consensus 217 ~~g~i~~Ll~lL~~--------~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~---------~~~~~v~~ 278 (464)
.......+++.+.. .+..++..++..+.|++..- ..+ .+......++.++. ..+++...
T Consensus 302 ~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~~el~~~l~e~l~~~~g~~E~~~~d~EA~y 378 (425)
T 3pst_A 302 SNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAY 378 (425)
T ss_dssp SHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHH
T ss_pred CchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHH
Confidence 33234556655432 24578889999999997521 000 01234556777666 35889999
Q ss_pred HHHHHHHHhcc
Q 012413 279 NAACALMSLAL 289 (464)
Q Consensus 279 ~a~~aL~~Ls~ 289 (464)
.++-||++|..
T Consensus 379 RlLVALGtLv~ 389 (425)
T 3pst_A 379 RLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 136
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=76.08 E-value=4 Score=38.08 Aligned_cols=130 Identities=9% Similarity=0.051 Sum_probs=77.6
Q ss_pred cCChhhHHHHHHHHHHHhcCcc-hHHHHHHcCCHHHHHHhhc----C----CCHHHHHHHHHHHHHHhCCHh-hHHHHHh
Q 012413 312 YGSSRGKKDALTTLYKLCSLKQ-NKERAVSAGAVRPLVGMLA----G----QGEGMAEKAMVVLSLLAGIAE-GREAIVE 381 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~~~-~~~~iv~~g~v~~Lv~lL~----~----~~~~v~~~A~~aL~nLa~~~~-~~~~i~~ 381 (464)
+.++..+.-++++++|+-.++. +++.+........++..+. + .+..++..++..+.|++.... .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4466788999999999999888 6666654323344444432 2 245678888999999984211 010 1
Q ss_pred cCcHHHHHHHHhc---------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhh-c-CCHHHHHHHHH
Q 012413 382 ENGIAALVEAIED---------GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQ-T-GSVRAKHKAET 447 (464)
Q Consensus 382 ~g~i~~Lv~lL~~---------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s-~~~~v~~~A~~ 447 (464)
......+++++.. .+.+....++.+||+|...++..+.. ++.+..+-.... . ..++++.-+..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~---a~~~~~~~~~~~~~~~e~R~~~v~~e 251 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQF---ANSVTWLANIKRSYGNVPRFKDIFDD 251 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCC---TTTCHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHH---hccHHHHHHHHHHcccchHHHHHHHh
Confidence 2345566666652 37788999999999999644322211 122344434332 1 35566665543
No 137
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=75.86 E-value=20 Score=34.21 Aligned_cols=107 Identities=8% Similarity=0.042 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHh--cCChHHHHHhhcC-------CCHHHHHHHHHHHHHhc
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGE--SGAVPALVPLLKC-------SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~--~g~i~~Ll~lL~~-------~~~~v~~~A~~aL~~La 247 (464)
.++..|+ +.....+.+++.|+++++..-+++|..-..|.+ ...+..+..-|.. ....++..-+.+|-.|.
T Consensus 71 ~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~ 149 (315)
T 3qml_C 71 ALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELP 149 (315)
T ss_dssp HHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHh
Confidence 5666666 556677889999999999999999998887765 3445555544432 23456777788888888
Q ss_pred CCCchHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhc
Q 012413 248 LHENNKTLITNAGAIKSLVYVLKTG--TETSKQNAACALMSLA 288 (464)
Q Consensus 248 ~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls 288 (464)
.++.- + ...++..|.+++..+ ++.++..++..+..+=
T Consensus 150 ~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 150 VTSED---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp CCSTT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cChHh---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 87521 1 245778888888887 8999999888887753
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=75.01 E-value=5.8 Score=34.61 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=60.4
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHhc
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC------SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~------~~~~v~~~A~~aL~~La 247 (464)
...++..|.+.|++.++.++..|+..|-.+.++. ......+.+...+..|+.++.. .++.|+..++..|..-+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3568888899999999999999999999999884 4566677778888999998863 46899999998887765
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=74.07 E-value=6 Score=33.25 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=59.2
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCc-hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRS-DNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLS 247 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~-~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La 247 (464)
...++..+.+.|.+.++.++..|+..|-.+.++.. .....+.+...+..|+.+++..++.|+..++..+..-+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 35688888999999999999999999988888753 34455656677888888887788999999998887765
No 140
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=73.51 E-value=9.4 Score=32.13 Aligned_cols=78 Identities=13% Similarity=0.026 Sum_probs=56.6
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhc----C------C--HHHHHHHHHHH
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQT----G------S--VRAKHKAETLL 449 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s----~------~--~~v~~~A~~aL 449 (464)
.+++.|..-|.+.++.++..|+.+|-.|+.+. +.-+..+.+.- .+++.+.+ + + ..||..|..++
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~---~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~ 125 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS---VAVRNLFHYKGHPDPLKGDALNKAVRETAHETI 125 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT---HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH---HHHHHHHhcCCCCCcccccchhHHHHHHHHHHH
Confidence 35677888888899999999999999999764 44444454432 12333332 1 2 49999999999
Q ss_pred HHhhcCCCCCCCCC
Q 012413 450 GYLREPRQEGPSSS 463 (464)
Q Consensus 450 ~~L~~~~~~~~~~~ 463 (464)
..|-+......+||
T Consensus 126 ~ll~d~~~~~~~~~ 139 (140)
T 1vdy_A 126 SAIFSEENGSGPSS 139 (140)
T ss_dssp HHHTCCSSCCCCCC
T ss_pred HHHhCcCCCCCCCC
Confidence 99998877777665
No 141
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=71.58 E-value=66 Score=31.72 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 012413 177 PTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNL 246 (464)
Q Consensus 177 ~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~L 246 (464)
..++.++..-.+.+.++|++.+..|...+....+.. ..+++.|..+|+++++.+.+.+..+..++
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455566666667788888888888877776544332 24567778888888888888877777664
No 142
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=66.68 E-value=15 Score=31.19 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=59.9
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-hHHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHhc
Q 012413 175 LQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-NRVLIGESGAVPALVPLLKC------SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 175 ~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-~r~~i~~~g~i~~Ll~lL~~------~~~~v~~~A~~aL~~La 247 (464)
...++..|.+.|++.++.++..|+..|-.+.++... ....+....++..|+.++.. .++.|+...+..+..-+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 356888889999999999999999999888887543 34566677788889998863 57899999998887765
Q ss_pred C
Q 012413 248 L 248 (464)
Q Consensus 248 ~ 248 (464)
.
T Consensus 126 ~ 126 (149)
T 3g2s_A 126 V 126 (149)
T ss_dssp H
T ss_pred H
Confidence 3
No 143
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.04 E-value=14 Score=31.88 Aligned_cols=71 Identities=11% Similarity=-0.014 Sum_probs=56.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~ 454 (464)
++..|..-|++.++.++..|+..|-.+... ...-...+.....+..|+.++.. .++.|+.++...+..-++
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 566777888889999999999999888876 35556666667788888888875 578999999888877664
No 144
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=65.28 E-value=56 Score=32.67 Aligned_cols=129 Identities=8% Similarity=0.039 Sum_probs=78.9
Q ss_pred cCChhhHHHHHHHHHHHhcCcchHHHHHH-cCCHHHHHHhhcC--------CCHHHHHHHHHHHHHHhCCHhh-HHHHHh
Q 012413 312 YGSSRGKKDALTTLYKLCSLKQNKERAVS-AGAVRPLVGMLAG--------QGEGMAEKAMVVLSLLAGIAEG-REAIVE 381 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~~~~~~~iv~-~g~v~~Lv~lL~~--------~~~~v~~~A~~aL~nLa~~~~~-~~~i~~ 381 (464)
+..+..+.-++++++|+-.++.....++. ......+++.+.. .+..++..++..+.|++..... +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 44677888999999999998884444443 2234555655532 1346788888999999852110 00 1
Q ss_pred cCcHHHHHHHHh---------cCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc--CCHHHHHHHH
Q 012413 382 ENGIAALVEAIE---------DGSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT--GSVRAKHKAE 446 (464)
Q Consensus 382 ~g~i~~Lv~lL~---------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~v~~~A~ 446 (464)
...+..+++++. ..+.+....++.|||+|....+..+... +.+..+-..... ..++++.-+.
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a---~~~~~~~~~~~~~~~e~R~~~v~~ 422 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFA---NSVTWLANIKRSYGNVPRFKDIFD 422 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHH---TTCHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHh---cCHHHHHHHHHhcccchHHHHHHH
Confidence 234556777766 2588899999999999997555433322 233444444321 3456665543
No 145
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.63 E-value=14 Score=30.97 Aligned_cols=71 Identities=7% Similarity=-0.015 Sum_probs=54.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~~L~~ 454 (464)
++..|..-|.+.++.++..|+..|-.+.... ..-...+.....+..|+.++...++.|+.+....+..-++
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 5667777888889999999988888777653 3445555556677778888877889999999988877654
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.45 E-value=10 Score=34.51 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=59.5
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCch-hHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSD-NRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~-~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La 247 (464)
+...++..|.+.|++.++.++..|+..|-.+.++-.. ....|.....+..|..+++. .++.|+..++..|..-+
T Consensus 42 ~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 42 QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999888877443 45566666777778777765 67889999998887765
No 147
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=63.31 E-value=15 Score=41.44 Aligned_cols=98 Identities=10% Similarity=-0.058 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHhCC-HhhHHHHHhcCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHH
Q 012413 356 EGMAEKAMVVLSLLAGI-AEGREAIVEENGIAALVEAIEDGS-----VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPP 429 (464)
Q Consensus 356 ~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~ 429 (464)
-...+.++++++.+++. .+..+.-.=..+++.|+.+..... ..+....++++|..+.--..+-..+ ..++..
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl~~ 570 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVVNK 570 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHH
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHHHH
Confidence 45688899999999853 222221222356777777776541 2244445577777654322222222 346788
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhcC
Q 012413 430 LVALSQTGSVRAKHKAETLLGYLREP 455 (464)
Q Consensus 430 Lv~lL~s~~~~v~~~A~~aL~~L~~~ 455 (464)
|++.+...++.|+..|+.++..|++.
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999998763
No 148
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=61.15 E-value=1e+02 Score=28.44 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=68.6
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCc
Q 012413 183 IDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGA 261 (464)
Q Consensus 183 v~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~ 261 (464)
+..-.....+.+...+.-...+.-+.+. . +. ..+++.++++..+.+.++|+..+..|...+.. ++. -...
T Consensus 21 ln~A~~~~~~~kl~~L~qa~el~~~~dp--~-ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l-----~~~~ 91 (257)
T 3gs3_A 21 CNELVIASPSTKCELLAKVQETVLGSCA--E-LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL-----LPHV 91 (257)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTTTTG--G-GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-----HHHH
T ss_pred HHHhhhcCcHHHHHHHHHHHHHHHccCH--h-HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 3333443347888889888887766432 1 21 35777888887788999999999999888742 222 2336
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHh
Q 012413 262 IKSLVYVLKTGTETSKQNAACALMSL 287 (464)
Q Consensus 262 i~~Lv~lL~~~~~~v~~~a~~aL~~L 287 (464)
++.|..+|+++++.+...+..+..++
T Consensus 92 l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 92 INVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 78888899999999998888777765
No 149
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=60.75 E-value=1.3e+02 Score=29.38 Aligned_cols=194 Identities=12% Similarity=0.082 Sum_probs=107.0
Q ss_pred cCCCCccccchhhhhHHHhhhhhhhhccCCcccccCCcchhHHHHHHhhhhh-cccchhhhHHHHHHhhcCCCchhhhhc
Q 012413 58 VPDNSGYLSENLTESVIDMRLGELASKTNDAKSVKSTISEDDYLNVSQAFSD-FSVCSSDISGELQRLASLPSPENILRQ 136 (464)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~ll~~-~~~~r~~a~~~l~~la~~~~~~~~~~~ 136 (464)
|+-+.-...++..-..|..-|.+++... .+++|+.+..|.+++++ ......-..-.+..+.+.|.
T Consensus 114 lP~~~yl~f~~~n~~~i~~kl~efN~~~-------~~ls~~el~~l~~~l~~~~~~~~~l~~~~~~i~~~Wp~------- 179 (362)
T 3l3f_X 114 LPVKQYLIMENYNPDTIFNGIVKINSNE-------KTFDDEILAQIGGALHDIDESWELLLSFANTIRSNWEI------- 179 (362)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHTCTTTCHHHHHHHHHHHHHHCSC-------
T ss_pred CCccceeeeccCCHHHHHHHHHHHcccc-------cCCCHHHHHHHHHHHhcccccHHHHHHHHHHHHhhCCc-------
Confidence 4444433456666566666666666442 37999999999999987 32221111122333444442
Q ss_pred CcccCcccccCCCchhhhhhhcccCchhhHhhhcCCCCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCchhHHHHH
Q 012413 137 PNENNCQAELEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRSDNRVLIG 216 (464)
Q Consensus 137 ~~~~~~~e~~~p~l~~lv~~L~~~~~s~~i~~~~~~~~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~~~r~~i~ 216 (464)
..|.+ +++..+....... +.+...+. ..+.+..+..+.-+++++.|+-.+..-.+..+.
T Consensus 180 ---------~FP~L-DLLRl~v~~~~~~--------~~l~~li~---~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~ 238 (362)
T 3l3f_X 180 ---------KTPAY-DIVRLIVKKLPYS--------SDIKDYIE---EGLGNKNITLTMLTVRILVNCFNNENWGVKLLE 238 (362)
T ss_dssp ---------CHHHH-HHHHHHGGGCSCG--------GGGHHHHH---HHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHT
T ss_pred ---------cchHH-HHHHHHhcCCChH--------HHHHHHHH---HhcCCCChhHHHHHHHHHHHhccCcchHHHHHh
Confidence 12222 1111111111000 01122222 234466788999999999999988443444443
Q ss_pred hcCChHHHHHhhc--------CCCHHHHHHHHHHHHHhcCCC-chHHHHHhcCcHHHHHHHHc---------cCCHHHHH
Q 012413 217 ESGAVPALVPLLK--------CSDPWTQEHSVTALLNLSLHE-NNKTLITNAGAIKSLVYVLK---------TGTETSKQ 278 (464)
Q Consensus 217 ~~g~i~~Ll~lL~--------~~~~~v~~~A~~aL~~La~~~-~~~~~i~~~g~i~~Lv~lL~---------~~~~~v~~ 278 (464)
.......+++.+. ..+..++..++..+.|++..- ..+ .+......++.++. ..+++...
T Consensus 239 ~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~el~~~l~~~l~~~~g~~E~~~~d~EA~y 315 (362)
T 3l3f_X 239 SNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAY 315 (362)
T ss_dssp SHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHH
T ss_pred cchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHH
Confidence 2212334444332 124678899999999997521 000 01234556777776 35889999
Q ss_pred HHHHHHHHhcc
Q 012413 279 NAACALMSLAL 289 (464)
Q Consensus 279 ~a~~aL~~Ls~ 289 (464)
.++-||++|..
T Consensus 316 RlLVALGtL~~ 326 (362)
T 3l3f_X 316 RLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.53 E-value=16 Score=33.03 Aligned_cols=74 Identities=7% Similarity=-0.003 Sum_probs=59.0
Q ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 012413 174 DLQPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPALVPLLKC-SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 174 ~~~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~Ll~lL~~-~~~~v~~~A~~aL~~La 247 (464)
+...++..|.+.|++.++.++..|+..|-.+.++- ......+.+...+..|+.++.+ .++.|+..++..+..-+
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 44678889999999999999999999999988885 3355666666788888888765 56888888888776654
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=59.42 E-value=20 Score=30.31 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=58.1
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 012413 383 NGIAALVEAIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQT------GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 383 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s------~~~~v~~~A~~aL~~L~~ 454 (464)
.++..|..-|++.++.++..|+..|-.+... +..-...+.....+..|+.++.. .++.|+.+....+..-+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3577788888899999999999999988876 45566777778888999999864 367999999888876654
No 152
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=57.31 E-value=46 Score=32.58 Aligned_cols=102 Identities=6% Similarity=0.019 Sum_probs=66.2
Q ss_pred cCChhhHHHHHHHHHHHhcCcchHHHHHHcC-CHHHHHHhhcC--------CCHHHHHHHHHHHHHHhCCHhh-HHHHHh
Q 012413 312 YGSSRGKKDALTTLYKLCSLKQNKERAVSAG-AVRPLVGMLAG--------QGEGMAEKAMVVLSLLAGIAEG-REAIVE 381 (464)
Q Consensus 312 ~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g-~v~~Lv~lL~~--------~~~~v~~~A~~aL~nLa~~~~~-~~~i~~ 381 (464)
+..+..+.-++++++|+-.++.....++... ....+++.+.+ .+..++..++..+.|++..... +. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4467788899999999999888444444221 22334444321 2356788888999999842110 00 1
Q ss_pred cCcHHHHHHHHh---------cCCHHHHHHHHHHHHHHhhcCHH
Q 012413 382 ENGIAALVEAIE---------DGSVKGKEFAVLTLLQLCAESVK 416 (464)
Q Consensus 382 ~g~i~~Lv~lL~---------~~~~~v~~~A~~aL~~L~~~~~~ 416 (464)
...+..+++++. ..+.+....++.+||+|...++.
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 234556777776 35889999999999999975544
No 153
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=56.53 E-value=1.4e+02 Score=34.26 Aligned_cols=211 Identities=13% Similarity=0.045 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHhcCCCchHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcccccchhhh----------hcc
Q 012413 232 DPWTQEHSVTALLNLSLHENNKTLITNAGAIKSLVYVL-KTGTETSKQNAACALMSLALIEENKSSI----------GAC 300 (464)
Q Consensus 232 ~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i----------~~~ 300 (464)
.+.+.+.-..++.++....+ ...++.++-++ -+.+...+..+-.++.+..........+ +-.
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~-------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~ 395 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE-------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLK 395 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT-------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHhCCCcccc-------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHH
Confidence 45555555555655543222 24566555433 3445566777777777655432111111 113
Q ss_pred CChHHHHHH----hhcCChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CHhh
Q 012413 301 GAIPPLVSL----LIYGSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAG-IAEG 375 (464)
Q Consensus 301 g~i~~Li~l----L~~~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~~~~ 375 (464)
..++.++.+ +.+.++.++..+...-..+-..-+ .+.+..++..|+..+.+....-...|+.+|..|+. ++.
T Consensus 396 ~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd---~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~- 471 (1323)
T 3s4w_B 396 DICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD---TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNAS- 471 (1323)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHH-
Confidence 456666644 456688888777776555544221 12233355677777766666667778999998884 322
Q ss_pred HHHHHh-cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHcCChHHHHHhhhcCCHHHHHH----HHHHH
Q 012413 376 REAIVE-ENGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVKN-RGLLVREGGIPPLVALSQTGSVRAKHK----AETLL 449 (464)
Q Consensus 376 ~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~~~v~~~----A~~aL 449 (464)
.+.. +-.+..+++.+.+=+..=-......|+.++...... ... ++...--.+.+-|.+.+...|+. |+..+
T Consensus 472 --~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~-i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v 548 (1323)
T 3s4w_B 472 --AMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNH-IQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMA 548 (1323)
T ss_dssp --HHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred --HHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchh-hHHhHHHHHHHHHhCCchhhhhhhHHHHHHHH
Confidence 3322 123556666666655444445567777776421100 000 11111223344455566655553 34455
Q ss_pred HHhhcCC
Q 012413 450 GYLREPR 456 (464)
Q Consensus 450 ~~L~~~~ 456 (464)
+.++..+
T Consensus 549 ~~~~~~~ 555 (1323)
T 3s4w_B 549 GIMAEDR 555 (1323)
T ss_dssp HHTTC--
T ss_pred HHHHHhc
Confidence 5555443
No 154
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=56.16 E-value=19 Score=31.21 Aligned_cols=71 Identities=14% Similarity=-0.001 Sum_probs=56.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhc------CCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQT------GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s------~~~~v~~~A~~aL~~L~~ 454 (464)
++..|..-|++.++.++..|+..|-.+.... ..-...+.+...+..|+.++.. .++.|+.++..++..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999988764 4455667777888899999863 357999999988876654
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=52.89 E-value=32 Score=29.27 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=56.8
Q ss_pred chHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccC-chhHHHHHhcCChHH-HHHhhcC---CCHHHHHHHHHHHHHhc
Q 012413 175 LQPTVKICIDGLQ-SSSVAIKRSAAAKLRLLAKNR-SDNRVLIGESGAVPA-LVPLLKC---SDPWTQEHSVTALLNLS 247 (464)
Q Consensus 175 ~~~~v~~Lv~~L~-s~~~~vr~~A~~~L~~La~~~-~~~r~~i~~~g~i~~-Ll~lL~~---~~~~v~~~A~~aL~~La 247 (464)
...++..|.+.|+ +.++.++..|+..|-.+.++. ......+.+...+.. |+.++.. ....|+..++..+..-+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3568888899998 589999999999999998885 555666767778887 7887742 35688888888876654
No 156
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=52.21 E-value=1.8e+02 Score=32.36 Aligned_cols=178 Identities=11% Similarity=-0.007 Sum_probs=102.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccc-ccchhhhhccCChHHHHHHhhc----CChhhHHHHHHHHH--HHh---c
Q 012413 261 AIKSLVYVLKTGTETSKQNAACALMSLALI-EENKSSIGACGAIPPLVSLLIY----GSSRGKKDALTTLY--KLC---S 330 (464)
Q Consensus 261 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~A~~aL~--nL~---~ 330 (464)
.+.-|+++-.+...++|..|-.+|...... ...+..+ +|.+++.|.. .+.+-.+-|+.+|. .+. .
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 466688888888999999999999997665 3444444 8888888865 24444445555443 111 1
Q ss_pred -CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhCC------------------------------------H
Q 012413 331 -LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLAGI------------------------------------A 373 (464)
Q Consensus 331 -~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa~~------------------------------------~ 373 (464)
+-.+. ...++.|+.....+.+.++.-+-.+...+... .
T Consensus 209 ~d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~ 283 (997)
T 1vsy_5 209 TDYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKK 283 (997)
T ss_dssp GCHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTT
T ss_pred cChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 11111 22556666666666666655444443343320 0
Q ss_pred hhHHHHHh--cCcHHHHHHHHhc-CC--HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhcCCHHHHHHHHHH
Q 012413 374 EGREAIVE--ENGIAALVEAIED-GS--VKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQTGSVRAKHKAETL 448 (464)
Q Consensus 374 ~~~~~i~~--~g~i~~Lv~lL~~-~~--~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~a 448 (464)
..+....+ ++....|++.+++ .+ -+....++..|.+|....+ ......++..+++.+.+++|.+|+.|..+
T Consensus 284 ~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~dhp~~R~~a~~~ 359 (997)
T 1vsy_5 284 KKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTKHPEIIHLVVKS 359 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 01111111 2344444566532 34 5566777777666663311 00111256778888899999999999988
Q ss_pred HHHh
Q 012413 449 LGYL 452 (464)
Q Consensus 449 L~~L 452 (464)
+..+
T Consensus 360 l~~i 363 (997)
T 1vsy_5 360 LLST 363 (997)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 8444
No 157
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=52.20 E-value=49 Score=27.93 Aligned_cols=70 Identities=19% Similarity=0.065 Sum_probs=56.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCHhhHHHHHhcCcHHHHHHHHhc------CCHHHHHHHHHHHHHHhh
Q 012413 343 AVRPLVGMLAGQGEGMAEKAMVVLSLLA--GIAEGREAIVEENGIAALVEAIED------GSVKGKEFAVLTLLQLCA 412 (464)
Q Consensus 343 ~v~~Lv~lL~~~~~~v~~~A~~aL~nLa--~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~A~~aL~~L~~ 412 (464)
++..|..-|.+.++.++..|+.+|-.+. ........|.....+..|+.++.. .+..|+..++..+...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 5567777788889999999999999888 345667777777888889999963 578999999999988774
No 158
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.99 E-value=31 Score=31.27 Aligned_cols=71 Identities=10% Similarity=0.114 Sum_probs=55.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAE-SVKNRGLLVREGGIPPLVALSQT-GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~~L~~ 454 (464)
++..|..-|++.++.++..|+..|-.+..+ ...-...+.....+..|+.++.. .++.|+.+...++...++
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999888765 33345556666677778888865 467999999998887664
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.86 E-value=46 Score=29.87 Aligned_cols=71 Identities=8% Similarity=0.106 Sum_probs=55.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIEDGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPPLVALSQTG-SVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~~L~~ 454 (464)
++..|..-|++.++.++..|+..|-.+.... ..-...+.+...+..|+.++.+. ++.|+.++...+..-++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 5667778888899999999999999988764 33455666667888888888654 67999998888776664
No 160
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.77 E-value=90 Score=26.40 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=53.3
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChHH-HHHhhhc---CCHHHHHHHHHHHHHhhc
Q 012413 384 GIAALVEAIE-DGSVKGKEFAVLTLLQLCAES-VKNRGLLVREGGIPP-LVALSQT---GSVRAKHKAETLLGYLRE 454 (464)
Q Consensus 384 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~-Lv~lL~s---~~~~v~~~A~~aL~~L~~ 454 (464)
++..|..-|+ ..++.++..|+..|-.+.... +.-...+.+...+.. |++++.. .+..|++++...+..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 5667778887 478999999999998888764 555666777777887 7888742 245899998888876654
No 161
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=32.61 E-value=3.6e+02 Score=26.34 Aligned_cols=87 Identities=9% Similarity=0.048 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHc
Q 012413 192 AIKRSAAAKLRLLAKNRSDNRVLIGESGAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLK 270 (464)
Q Consensus 192 ~vr~~A~~~L~~La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~ 270 (464)
+.+...+.-+.++..+.+. .+ =..+++.++.+-.+.+.++|+..+..|...+.. .+.. ...++.|..+|.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dp---sL-l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~ 110 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDP---TL-LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR 110 (386)
T ss_dssp THHHHHHHHHHHHHHTTCG---GG-GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCH---HH-HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 4678888888887654322 12 247899999999999999999999999888752 2321 236778888999
Q ss_pred cCCHHHHHHHHHHHHHh
Q 012413 271 TGTETSKQNAACALMSL 287 (464)
Q Consensus 271 ~~~~~v~~~a~~aL~~L 287 (464)
++++.+...+..+..++
T Consensus 111 d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQL 127 (386)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999998888877775
No 162
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=31.54 E-value=2.2e+02 Score=23.57 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=45.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCc-hhHHHHHhcCChHHHHHhhcC----CC--------HHHHHHHHHH
Q 012413 176 QPTVKICIDGLQSSSVAIKRSAAAKLRLLAKNRS-DNRVLIGESGAVPALVPLLKC----SD--------PWTQEHSVTA 242 (464)
Q Consensus 176 ~~~v~~Lv~~L~s~~~~vr~~A~~~L~~La~~~~-~~r~~i~~~g~i~~Ll~lL~~----~~--------~~v~~~A~~a 242 (464)
..+++.|.+.|.+.++.++..|+++|..|+.+.. ..+..+.+.- .+|+.|.+ ++ ..||..|-.+
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~---~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS---VAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT---HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH---HHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 4688888999999999999999999999986643 4444443322 23444443 22 3566666666
Q ss_pred HHHhc
Q 012413 243 LLNLS 247 (464)
Q Consensus 243 L~~La 247 (464)
+.-|-
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 65554
No 163
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=29.35 E-value=71 Score=35.71 Aligned_cols=184 Identities=11% Similarity=0.056 Sum_probs=94.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhcCC-CchHHHHHhcCcHHHHHHHHcc----CCHHHHHHHHHHHHHhcccccc
Q 012413 219 GAVPALVPLLKCSDPWTQEHSVTALLNLSLH-ENNKTLITNAGAIKSLVYVLKT----GTETSKQNAACALMSLALIEEN 293 (464)
Q Consensus 219 g~i~~Ll~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~Ls~~~~~ 293 (464)
-.+.-|+.+-.+.-++||..|-.+|...... +..+.. .+|.+++.|+. .+.+-.+-|+.+|. ...-.
T Consensus 133 ~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~---~k~~~ 204 (997)
T 1vsy_5 133 LLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLL---IKKIH 204 (997)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTT---SHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHh---hhhhh
Confidence 3455677777888999999999999998774 444443 46667776654 23333333333332 11111
Q ss_pred hhhhhc----cCChHHHHHHhhcCChhhHHHHHHHHHHHhcC---cc---------------------------------
Q 012413 294 KSSIGA----CGAIPPLVSLLIYGSSRGKKDALTTLYKLCSL---KQ--------------------------------- 333 (464)
Q Consensus 294 ~~~i~~----~g~i~~Li~lL~~~~~~v~~~A~~aL~nL~~~---~~--------------------------------- 333 (464)
+....+ ...++.|+++...+.+.++..+-.+...+... +.
T Consensus 205 ~~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~ 284 (997)
T 1vsy_5 205 RKLMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKK 284 (997)
T ss_dssp HHGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTH
T ss_pred hHHhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 111111 12355666665556666666555554444331 00
Q ss_pred hHHHHHH--cCCHHHHHHhhcCC-C--HHHHHHHHHHHHHHhCCHhhHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 012413 334 NKERAVS--AGAVRPLVGMLAGQ-G--EGMAEKAMVVLSLLAGIAEGREAIVEENGIAALVEAIEDGSVKGKEFAVLTLL 408 (464)
Q Consensus 334 ~~~~iv~--~g~v~~Lv~lL~~~-~--~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 408 (464)
++....+ ++....|++..++. + =.....++..|.+|....+ ......++..+++.+.++++.+|..|..++.
T Consensus 285 ~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~ 361 (997)
T 1vsy_5 285 KREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSLL 361 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 0000000 12222233333111 1 1122333344333332110 1111236777888888999999999999997
Q ss_pred HHhhc
Q 012413 409 QLCAE 413 (464)
Q Consensus 409 ~L~~~ 413 (464)
.+...
T Consensus 362 ~il~~ 366 (997)
T 1vsy_5 362 STCNK 366 (997)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77743
No 164
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=25.81 E-value=5.3e+02 Score=26.09 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcCChh---hHHHHHHHHHHHhc
Q 012413 254 TLITNAGAIKSLVYVLKTGTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYGSSR---GKKDALTTLYKLCS 330 (464)
Q Consensus 254 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~~~~---v~~~A~~aL~nL~~ 330 (464)
+.+.+.=-+..++..|+++++.+...+|.++. .+..+..+...+.+..|++++-+.+.. +....-.++..|+.
T Consensus 110 d~VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss 185 (500)
T 3vld_A 110 DDVLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST 185 (500)
T ss_dssp HHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc
Q ss_pred CcchHHHHHHcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 012413 331 LKQNKERAVSAGAVRPLVGMLAGQGEGMAEKAMVVLSLLA 370 (464)
Q Consensus 331 ~~~~~~~iv~~g~v~~Lv~lL~~~~~~v~~~A~~aL~nLa 370 (464)
+.-.+.++. ..-.|.|..+=+..++-+...-+..+.-+.
T Consensus 186 deLirrril-~nnl~lL~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 186 DELIRRRLF-DNNLPYLVSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp SHHHHHHHH-TTTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHhHHHHHHHhcCCCceeHHHHHHHHHHHh
No 165
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=24.16 E-value=2.4e+02 Score=24.79 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=63.1
Q ss_pred cHHHHHHHHcc------CCHHHHHHHHHHHHHhcccccchhhhhccCChHHHHHHhhcC---ChhhHHHHHHHHHHHhcC
Q 012413 261 AIKSLVYVLKT------GTETSKQNAACALMSLALIEENKSSIGACGAIPPLVSLLIYG---SSRGKKDALTTLYKLCSL 331 (464)
Q Consensus 261 ~i~~Lv~lL~~------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Li~lL~~~---~~~v~~~A~~aL~nL~~~ 331 (464)
.+|.++..+.+ .+.............|..++...-...-.-.+|.++.++-.. ...+|..|+..|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 45666655543 255555556666666655543322222233578888887543 227999999999999882
Q ss_pred cchHHHHHHcCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhC
Q 012413 332 KQNKERAVSAGAVRPLVGMLAGQG--EGMAEKAMVVLSLLAG 371 (464)
Q Consensus 332 ~~~~~~iv~~g~v~~Lv~lL~~~~--~~v~~~A~~aL~nLa~ 371 (464)
=...-.-.....+..+.+.+.++. .....-|+..|..|..
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 111001122234556676666544 4456677777776654
No 166
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=24.03 E-value=1.6e+02 Score=25.90 Aligned_cols=128 Identities=11% Similarity=0.044 Sum_probs=74.4
Q ss_pred ChHHHHHHhhc------CChhhHHHHHHHHHHHhcCcchHHHHHHcCCHHHHHHhhcC---CCHHHHHHHHHHHHHHhCC
Q 012413 302 AIPPLVSLLIY------GSSRGKKDALTTLYKLCSLKQNKERAVSAGAVRPLVGMLAG---QGEGMAEKAMVVLSLLAGI 372 (464)
Q Consensus 302 ~i~~Li~lL~~------~~~~v~~~A~~aL~nL~~~~~~~~~iv~~g~v~~Lv~lL~~---~~~~v~~~A~~aL~nLa~~ 372 (464)
.+|.++..+.+ .+.......+.....|..++...-...-...+|.++.++-. ....+|+.|+..|+.++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 35666666543 25566667777777777765422111112256677776632 2237899999999999942
Q ss_pred HhhHHHHHhcCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChHHHHHhhhc
Q 012413 373 AEGREAIVEENGIAALVEAIED--GSVKGKEFAVLTLLQLCAESVKNRGLLVREGGIPPLVALSQT 436 (464)
Q Consensus 373 ~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 436 (464)
-...-.-....++..+.+.+.+ .+.....-|+..|..|+.. .++.-.+|.|-...+.
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~-------~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKN-------VVNTVIREHAEEYKRT 179 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHH-------HHHTHHHHHHHHHHHH
T ss_pred hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHH-------HHHHhhhcCHHHHHHH
Confidence 1110011123456677777765 3567777888888888752 1223345666555544
Done!