BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012414
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
L+ ++++G R+SD T++ N +LV + LS C G + + L+S C L ++L+ C
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178
Query: 363 HSITDDAIS-AIADSCRGLVCLKIESCNMITEKG-LYQLGSFCLRLEEIDLTDCNGVNDK 420
T+ + A+A + L + +K L L C L +DL+D + +
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238
Query: 421 GLEYLSRCSELLFLKLGLCENISDKGLFYIA 451
+ + + L L L C +I + L +
Sbjct: 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
L+ ++++G R+SD T++ N +LV + LS C G + + L+S C L ++L+ C
Sbjct: 82 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 140
Query: 363 HSITDDAIS-AIADSCRGLVCLKIESCNMITEKG-LYQLGSFCLRLEEIDLTDCNGVNDK 420
T+ + A+A + L + +K L L C L +DL+D + +
Sbjct: 141 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 200
Query: 421 GLEYLSRCSELLFLKLGLCENISDKGLFYIA 451
+ + + L L L C +I + L +
Sbjct: 201 CFQEFFQLNYLQHLSLSRCYDIIPETLLELG 231
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
LE I + ++D C + I+ + K+ + LS C G + G+ + + C NLK +DL
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR-- 164
Query: 363 HSITDDA----ISAIADSCRGLVCLKIESC--NMITEKGLYQLGSFCLRLEEIDLT 412
S DD +S D+ LV L I SC + ++ L +L + C L+ + L
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNI-SCLASEVSFSALERLVTRCPNLKSLKLN 219
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 365 ITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEY 424
+TDD + IA S + L + SC + GL + + C L+E+DL + + V+D +
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHW 175
Query: 425 LSRCSE----LLFLKLG-LCENISDKGLFYIASNCLRIQGLDLYK 464
LS + L+ L + L +S L + + C ++ L L +
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 89/438 (20%), Positives = 170/438 (38%), Gaps = 72/438 (16%)
Query: 10 LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFL--FILLDKYPYI 67
E++L V I + D + LVCK + ++ R + + + ++ ++P +
Sbjct: 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68
Query: 68 KTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESV 127
++++L P D +L+ G Y +E ++ + LE +
Sbjct: 69 RSVELKGKPHFADF------------------NLVPDGWGGYVYPWIEAMSSSYTWLEEI 110
Query: 128 DLSYCCGFGD-REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEI 186
L D E A SF + K + L C + GLA IA C NL+ L L+ ++
Sbjct: 111 RLKRMVVTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DV 168
Query: 187 SDLGIXXXXXXXXXXXXXXVSYLKLTNDSFCSIATLAKLESLVMVGCPC--VDDTGLRFL 244
D+ +L D++ S+ +L + C V + L L
Sbjct: 169 DDVS---------------GHWLSHFPDTYTSLVSLN-------ISCLASEVSFSALERL 206
Query: 245 ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM------- 297
+ CP LK++ ++R V L ++++ L +L G +E+ + +
Sbjct: 207 VTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264
Query: 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTI 357
++L+ L D + + C L + LS V + + +L+ C L+
Sbjct: 265 KELRCLSGF-WDAV---PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQR- 318
Query: 358 DLTCCHSITDDAISAIADSCRGLVCLKI--------ESCNMITEKGLYQLGSFCLRLEEI 409
L I D + +A +C+ L L++ E +TE+GL + C +LE +
Sbjct: 319 -LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377
Query: 410 DLTDCNGVNDKGLEYLSR 427
L C + + L ++R
Sbjct: 378 -LYFCRQMTNAALITIAR 394
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 74/267 (27%)
Query: 251 LKTIFVSRCKFVSSTGLISVI---RGHSGLLQLDAGHCFSELSTTLLH----HMRDLKNL 303
L+T+ + +C ++ GL+S++ R LL ++ FSE LH H L+ L
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVL 197
Query: 304 EAITMDGARISDSCFQTISFNCKSLV--------------------------------EI 331
+ A+IS +TI+ NC+SLV +I
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257
Query: 332 GLSKC------------LGVTNTGITQ---LVSGCVNLKTIDLTCCHSITDDAISAIADS 376
G+ + LG++ G + L ++ +DL T+D + I
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI-QK 316
Query: 377 CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKL 436
C L L E+ N+I ++GL L +C +L+ + + G +++G+E +
Sbjct: 317 CPNLEVL--ETRNVIGDRGLEVLAQYCKQLKRLRIE--RGADEQGMED----------EE 362
Query: 437 GLCENISDKGLFYIASNCLRIQGLDLY 463
GL +S +GL +A C ++ + +Y
Sbjct: 363 GL---VSQRGLIALAQGCQELEYMAVY 386
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 29/188 (15%)
Query: 12 EDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTR--TTLRVLRVEFLFILLDKYPYIKT 69
+D++ +V I D D + LVC+ + ++DS TR T+ + L ++P +++
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRS 77
Query: 70 LDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDL 129
L L PR + + + + +W + + S LR R ++ +DL
Sbjct: 78 LKLKGKPR------AAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDL 129
Query: 130 SYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSL--------- 180
DR A A A L+ +KLDKC T GL I C ++ L +
Sbjct: 130 -------DRLAKAR--ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180
Query: 181 -KWCMEIS 187
KW E++
Sbjct: 181 GKWLHELA 188
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 337 LGVTNTGITQLVSGCVNLKTIDLT-CCHSITDDAISAIADSCRGLVCLKIESCNM-ITEK 394
+G ++ G+ + GC NL+ +++ CC S + AI+A L L ++ +T +
Sbjct: 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFS--ERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530
Query: 395 GLYQLGSFCLRLEEIDLTDCNGVNDKG 421
L Q+ +E I VN +G
Sbjct: 531 DLMQMARPYWNIELIPSRRVPEVNQQG 557
>pdb|1HQT|A Chain A, The Crystal Structure Of An Aldehyde Reductase Y50f
Mutant- Nadp Complex And Its Implications For Substrate
Binding
Length = 326
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 92 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 150
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 151 LVAKGLVRALGL 162
>pdb|3CV7|A Chain A, Crystal Structure Of Porcine Aldehyde Reductase Ternary
Complex
pdb|3H4G|A Chain A, Structure Of Aldehyde Reductase Holoenzyme In Complex With
Potent Aldose Reductase Inhibitor Fidarestat:
Implications For Inhibitor Binding And Selectivity
pdb|3FX4|A Chain A, Porcine Aldehyde Reductase In Ternary Complex With
Inhibitor
Length = 325
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 91 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 149
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 150 LVAKGLVRALGL 161
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 387 SCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL 438
SC MI GL + CL ++ I + D + V G+E +S+ L +L+ G+
Sbjct: 87 SCQMIXGSGLK---AVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGV 135
>pdb|1AE4|A Chain A, Aldehyde Reductase Complexed With Cofactor And Inhibitor,
Alpha Carbon Atoms Only
Length = 325
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 91 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 149
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 150 LVAKGLVRALGL 161
>pdb|1CWN|A Chain A, Crystal Structure Of Porcine Aldehyde Reductase Holoenzyme
Length = 324
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 90 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTIRYDATHYKDTW-KALEA 148
Query: 101 LI---LSRSTGL 109
L+ L R+ GL
Sbjct: 149 LVAKGLVRALGL 160
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 297 MRDLKNLEAITMDGARI-----SDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351
+D +L +D +I +DSC +I F+ + G
Sbjct: 47 QKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDH----------------------MEGL 84
Query: 352 VNLKTIDLTCCHSITD---DAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408
++ I L CH I D + +S + + + ++ ++I SC +T+KG+ L F L+
Sbjct: 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKY 143
Query: 409 IDLTDCNGVNDK 420
+ L+D GV +K
Sbjct: 144 LFLSDLPGVKEK 155
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 297 MRDLKNLEAITMDGARI-----SDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351
+D +L +D +I +DSC +I F+ + G
Sbjct: 47 QKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDH----------------------MEGL 84
Query: 352 VNLKTIDLTCCHSITD---DAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408
++ I L CH I D + +S + + + ++ ++I SC +T+KG+ L F L+
Sbjct: 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-RNLKY 143
Query: 409 IDLTDCNGVNDK 420
+ L+D GV +K
Sbjct: 144 LFLSDLPGVKEK 155
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 105 RSTGLRYRGLEMLARACPLLESVDLSYCC---GFGDREAAALSFASGLKEVKLDKCLNVT 161
R G+ + R C L+ V L YCC GF L SGL E+KL N
Sbjct: 308 RKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQM 367
Query: 162 D 162
D
Sbjct: 368 D 368
>pdb|2ALR|A Chain A, Aldehyde Reductase
Length = 324
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 41 VDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKS 100
V+ R TL L++E+L + L +PY + P+ DGT+ + + +W ++L++
Sbjct: 90 VEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTICYDSTHYKETW-KALEA 148
Query: 101 LI 102
L+
Sbjct: 149 LV 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,581,134
Number of Sequences: 62578
Number of extensions: 415953
Number of successful extensions: 1221
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 34
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)