Query 012414
Match_columns 464
No_of_seqs 354 out of 3321
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 02:23:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 4.9E-39 1.1E-43 272.4 13.8 381 7-460 72-457 (483)
2 KOG4341 F-box protein containi 100.0 6.7E-29 1.5E-33 211.1 10.6 326 57-413 129-461 (483)
3 KOG2120 SCF ubiquitin ligase, 100.0 9.6E-28 2.1E-32 195.2 12.5 286 5-329 96-390 (419)
4 PLN00113 leucine-rich repeat r 99.9 3.5E-23 7.6E-28 213.7 16.0 281 58-362 86-366 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.5E-22 5.5E-27 207.4 16.0 375 58-464 111-508 (968)
6 KOG4194 Membrane glycoprotein 99.9 2.5E-23 5.5E-28 184.7 1.8 345 68-439 55-426 (873)
7 KOG4194 Membrane glycoprotein 99.8 7.5E-23 1.6E-27 181.7 -2.1 362 61-453 98-463 (873)
8 cd00116 LRR_RI Leucine-rich re 99.8 7.2E-17 1.6E-21 145.7 25.8 248 166-421 16-294 (319)
9 cd00116 LRR_RI Leucine-rich re 99.8 7.1E-17 1.5E-21 145.7 24.8 277 178-464 3-316 (319)
10 KOG2120 SCF ubiquitin ligase, 99.8 2.5E-18 5.5E-23 140.7 10.6 251 201-459 138-391 (419)
11 KOG1947 Leucine rich repeat pr 99.7 2.5E-16 5.4E-21 151.0 14.9 254 172-450 187-448 (482)
12 PLN03210 Resistant to P. syrin 99.6 8.5E-15 1.8E-19 152.0 13.8 292 121-443 610-907 (1153)
13 KOG1947 Leucine rich repeat pr 99.6 2.8E-14 6E-19 136.9 13.9 262 199-463 161-435 (482)
14 PLN03210 Resistant to P. syrin 99.6 1.9E-14 4.1E-19 149.5 11.7 264 171-463 632-901 (1153)
15 KOG0444 Cytoskeletal regulator 99.5 2.6E-16 5.7E-21 142.0 -5.2 270 64-361 6-277 (1255)
16 KOG1909 Ran GTPase-activating 99.5 8.5E-13 1.8E-17 111.2 15.6 199 248-454 91-324 (382)
17 KOG0444 Cytoskeletal regulator 99.5 4.3E-16 9.4E-21 140.7 -6.0 342 94-463 5-370 (1255)
18 KOG1909 Ran GTPase-activating 99.4 2E-11 4.4E-16 103.1 16.0 189 145-336 28-251 (382)
19 KOG0618 Serine/threonine phosp 99.3 1.5E-13 3.3E-18 129.8 0.4 105 328-441 361-488 (1081)
20 KOG3207 Beta-tubulin folding c 99.3 8.2E-13 1.8E-17 114.5 2.7 213 220-439 118-336 (505)
21 KOG3207 Beta-tubulin folding c 99.2 3.5E-12 7.7E-17 110.7 3.4 215 197-419 119-340 (505)
22 KOG0618 Serine/threonine phosp 99.1 1.4E-11 3E-16 116.9 -0.3 253 173-446 241-516 (1081)
23 KOG2982 Uncharacterized conser 99.0 3.5E-10 7.7E-15 93.6 4.4 209 224-440 46-260 (418)
24 KOG4237 Extracellular matrix p 99.0 4E-11 8.6E-16 102.9 -1.5 101 348-453 270-370 (498)
25 PF12937 F-box-like: F-box-lik 99.0 2.4E-10 5.1E-15 69.4 1.7 38 7-45 1-38 (47)
26 KOG3665 ZYG-1-like serine/thre 98.9 9.6E-09 2.1E-13 99.6 10.8 156 146-307 121-281 (699)
27 PRK15387 E3 ubiquitin-protein 98.8 2.5E-09 5.5E-14 104.1 4.8 263 122-449 201-464 (788)
28 KOG3665 ZYG-1-like serine/thre 98.8 2.3E-08 5E-13 97.0 11.3 156 223-385 122-282 (699)
29 COG5238 RNA1 Ran GTPase-activa 98.8 8.3E-08 1.8E-12 78.8 11.5 191 247-444 90-317 (388)
30 KOG4237 Extracellular matrix p 98.7 1.1E-09 2.3E-14 94.3 -1.3 272 174-462 68-353 (498)
31 PRK15387 E3 ubiquitin-protein 98.7 1E-08 2.2E-13 99.9 4.6 253 147-464 201-454 (788)
32 KOG0472 Leucine-rich repeat pr 98.7 3.3E-10 7.2E-15 97.6 -6.4 18 57-74 60-77 (565)
33 PF14580 LRR_9: Leucine-rich r 98.6 1.8E-08 3.9E-13 79.8 2.2 125 327-461 20-146 (175)
34 COG5238 RNA1 Ran GTPase-activa 98.5 4.8E-06 1.1E-10 68.7 14.6 223 197-440 28-283 (388)
35 PF00646 F-box: F-box domain; 98.5 1.6E-08 3.6E-13 61.8 0.3 39 6-45 2-40 (48)
36 KOG2982 Uncharacterized conser 98.5 1.3E-07 2.9E-12 78.6 5.4 94 164-258 62-155 (418)
37 smart00256 FBOX A Receptor for 98.4 1.8E-07 3.9E-12 55.0 2.5 35 10-45 1-35 (41)
38 KOG3864 Uncharacterized conser 98.4 5E-07 1.1E-11 71.0 4.6 84 328-414 103-186 (221)
39 KOG3864 Uncharacterized conser 98.3 8E-07 1.7E-11 69.9 4.7 105 302-408 102-208 (221)
40 KOG1259 Nischarin, modulator o 98.3 2.4E-07 5.1E-12 77.4 1.3 127 300-440 283-410 (490)
41 PF14580 LRR_9: Leucine-rich r 98.2 7.1E-07 1.5E-11 70.8 3.1 105 121-234 18-124 (175)
42 KOG1259 Nischarin, modulator o 98.2 3E-07 6.5E-12 76.7 0.4 124 325-463 283-407 (490)
43 KOG4658 Apoptotic ATPase [Sign 98.2 4.9E-07 1.1E-11 90.4 1.9 108 120-232 543-651 (889)
44 PRK15370 E3 ubiquitin-protein 98.2 9.9E-06 2.2E-10 79.9 9.5 12 200-211 242-253 (754)
45 PRK15370 E3 ubiquitin-protein 98.1 6.8E-06 1.5E-10 81.0 8.1 255 147-450 178-435 (754)
46 KOG0472 Leucine-rich repeat pr 98.1 1.4E-07 3.1E-12 81.8 -3.0 108 323-440 432-539 (565)
47 KOG4658 Apoptotic ATPase [Sign 98.1 1.3E-06 2.9E-11 87.4 2.5 132 95-232 544-677 (889)
48 PF13855 LRR_8: Leucine rich r 97.7 6.1E-06 1.3E-10 53.3 -1.0 59 378-439 1-59 (61)
49 PF13855 LRR_8: Leucine rich r 97.6 6.8E-06 1.5E-10 53.1 -1.1 58 404-464 1-58 (61)
50 KOG1859 Leucine-rich repeat pr 97.6 1E-05 2.2E-10 76.2 -0.9 16 219-234 105-120 (1096)
51 KOG2123 Uncharacterized conser 97.3 4.3E-05 9.3E-10 63.5 -0.2 100 353-461 20-123 (388)
52 KOG1859 Leucine-rich repeat pr 97.2 6E-05 1.3E-09 71.2 -0.7 107 197-313 185-291 (1096)
53 smart00367 LRR_CC Leucine-rich 97.1 0.00061 1.3E-08 34.9 2.9 22 429-450 2-23 (26)
54 smart00367 LRR_CC Leucine-rich 97.1 0.00062 1.3E-08 34.9 2.7 23 403-425 1-23 (26)
55 KOG2739 Leucine-rich acidic nu 97.1 0.00018 4E-09 59.5 1.1 84 377-461 64-149 (260)
56 KOG0617 Ras suppressor protein 96.9 5.9E-06 1.3E-10 63.2 -8.5 83 273-361 100-182 (264)
57 KOG4308 LRR-containing protein 96.8 0.00031 6.8E-09 65.7 0.4 115 325-443 203-332 (478)
58 KOG0617 Ras suppressor protein 96.8 7.3E-06 1.6E-10 62.8 -8.4 15 297-311 169-183 (264)
59 PLN03215 ascorbic acid mannose 96.8 0.00086 1.9E-08 59.8 2.7 39 6-44 3-41 (373)
60 PF12799 LRR_4: Leucine Rich r 96.8 0.0021 4.5E-08 37.9 3.5 38 404-444 1-38 (44)
61 PRK15386 type III secretion pr 96.7 0.0027 5.8E-08 57.5 5.4 71 197-284 50-121 (426)
62 KOG2739 Leucine-rich acidic nu 96.7 0.00032 6.9E-09 58.1 -0.9 87 172-258 64-152 (260)
63 PLN03150 hypothetical protein; 96.6 0.0042 9.2E-08 61.1 6.0 106 328-440 420-526 (623)
64 PLN03150 hypothetical protein; 96.6 0.0052 1.1E-07 60.5 6.5 106 123-233 419-525 (623)
65 KOG4308 LRR-containing protein 96.2 0.0022 4.8E-08 60.2 1.5 196 251-453 89-313 (478)
66 KOG2123 Uncharacterized conser 96.1 0.0023 5.1E-08 53.6 1.3 115 146-271 18-136 (388)
67 KOG2997 F-box protein FBX9 [Ge 96.1 0.0037 8E-08 53.2 2.3 41 5-45 105-149 (366)
68 KOG0281 Beta-TrCP (transducin 96.1 0.0025 5.5E-08 54.5 1.3 44 1-45 69-116 (499)
69 COG4886 Leucine-rich repeat (L 95.9 0.0084 1.8E-07 55.9 3.9 59 250-314 141-199 (394)
70 COG4886 Leucine-rich repeat (L 95.8 0.0074 1.6E-07 56.3 3.2 174 248-441 115-289 (394)
71 PF12799 LRR_4: Leucine Rich r 95.7 0.0089 1.9E-07 35.2 2.2 33 429-464 1-33 (44)
72 KOG1644 U2-associated snRNP A' 95.6 0.0091 2E-07 47.7 2.6 35 378-413 88-122 (233)
73 KOG1644 U2-associated snRNP A' 95.5 0.0051 1.1E-07 49.0 0.9 59 172-232 63-122 (233)
74 PF13516 LRR_6: Leucine Rich r 95.2 0.019 4.1E-07 28.6 2.1 21 429-450 2-22 (24)
75 KOG4579 Leucine-rich repeat (L 94.7 0.019 4.2E-07 42.8 1.8 88 352-444 27-115 (177)
76 PRK15386 type III secretion pr 94.5 0.082 1.8E-06 48.2 5.6 138 271-439 48-187 (426)
77 PF13516 LRR_6: Leucine Rich r 93.7 0.058 1.3E-06 26.8 1.8 20 199-218 2-21 (24)
78 KOG4579 Leucine-rich repeat (L 93.7 0.021 4.5E-07 42.7 0.2 60 325-389 52-111 (177)
79 PF13013 F-box-like_2: F-box-l 93.5 0.077 1.7E-06 38.2 2.8 29 7-36 22-50 (109)
80 smart00368 LRR_RI Leucine rich 93.2 0.14 3E-06 26.6 2.8 24 429-453 2-25 (28)
81 KOG0531 Protein phosphatase 1, 92.5 0.019 4E-07 53.8 -1.9 170 248-439 94-265 (414)
82 KOG3763 mRNA export factor TAP 92.3 0.29 6.2E-06 45.8 5.4 39 350-388 216-254 (585)
83 smart00368 LRR_RI Leucine rich 89.3 0.78 1.7E-05 23.7 3.2 23 301-323 2-24 (28)
84 KOG0531 Protein phosphatase 1, 86.6 0.27 5.9E-06 46.1 0.8 105 324-441 93-198 (414)
85 KOG0274 Cdc4 and related F-box 86.2 0.2 4.3E-06 48.1 -0.3 45 4-49 105-149 (537)
86 PF13504 LRR_7: Leucine rich r 84.8 0.66 1.4E-05 20.7 1.2 10 430-439 2-11 (17)
87 KOG3763 mRNA export factor TAP 83.4 2.4 5.2E-05 40.0 5.2 85 299-385 216-308 (585)
88 PF07723 LRR_2: Leucine Rich R 82.8 1.1 2.4E-05 22.7 1.6 26 430-455 1-26 (26)
89 PF13306 LRR_5: Leucine rich r 82.1 0.15 3.2E-06 38.7 -2.6 80 350-438 33-112 (129)
90 PF13306 LRR_5: Leucine rich r 74.4 0.31 6.7E-06 36.9 -2.8 9 198-206 80-88 (129)
91 KOG3926 F-box proteins [Amino 73.1 4.4 9.4E-05 34.3 3.3 40 4-43 199-238 (332)
92 KOG3735 Tropomodulin and leiom 66.3 16 0.00035 32.4 5.4 96 342-438 188-292 (353)
93 PF00560 LRR_1: Leucine Rich R 65.7 3 6.4E-05 20.0 0.6 13 430-443 1-13 (22)
94 smart00370 LRR Leucine-rich re 55.9 8.7 0.00019 19.1 1.4 15 429-444 2-16 (26)
95 smart00369 LRR_TYP Leucine-ric 55.9 8.7 0.00019 19.1 1.4 15 429-444 2-16 (26)
96 KOG4242 Predicted myosin-I-bin 54.9 20 0.00044 33.5 4.3 124 327-455 355-493 (553)
97 KOG0532 Leucine-rich repeat (L 52.5 2.8 6E-05 39.9 -1.4 36 379-418 212-247 (722)
98 smart00365 LRR_SD22 Leucine-ri 47.2 18 0.0004 18.3 1.7 14 429-443 2-15 (26)
99 KOG2502 Tub family proteins [G 43.7 21 0.00046 31.7 2.6 41 5-45 43-90 (355)
100 KOG0532 Leucine-rich repeat (L 43.3 7.6 0.00016 37.1 -0.1 36 198-234 210-245 (722)
101 PF03382 DUF285: Mycoplasma pr 41.7 18 0.0004 26.9 1.8 57 397-458 54-114 (120)
102 PF07735 FBA_2: F-box associat 29.9 1.6E+02 0.0034 19.0 5.8 14 379-392 12-25 (70)
103 smart00446 LRRcap occurring C- 29.6 38 0.00082 17.2 1.2 14 449-462 7-20 (26)
104 KOG3735 Tropomodulin and leiom 28.8 1.8E+02 0.0039 26.2 5.8 86 239-324 188-278 (353)
105 smart00364 LRR_BAC Leucine-ric 22.0 59 0.0013 16.6 1.0 14 429-443 2-15 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=4.9e-39 Score=272.36 Aligned_cols=381 Identities=25% Similarity=0.431 Sum_probs=293.7
Q ss_pred cCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhcccccceeecchhHHHHHHhhCCCceEEecccCC-CCCcchhhh
Q 012414 7 LDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCP-RVNDGTVSF 85 (464)
Q Consensus 7 ~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~ 85 (464)
.-.||+|++..||++|+ .+.+.+++.+|+.|...+.+. .+++..++...+ .+....++.
T Consensus 72 ~~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~-------------------~~~q~idL~t~~rDv~g~VV~~ 131 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDG-------------------SCWQHIDLFTFQRDVDGGVVEN 131 (483)
T ss_pred cccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhcc-------------------ccceeeehhcchhcCCCcceeh
Confidence 34699999999999999 999999999999998876444 445555554322 233344444
Q ss_pred hhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhc-CCCCcEEecCCCCCCCHHH
Q 012414 86 LLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF-ASGLKEVKLDKCLNVTDVG 164 (464)
Q Consensus 86 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~ 164 (464)
+ ....+..+++|.+.++..+.+..+..+...||++++|.+.+|..+++.....+++ +++|++|++..|..+++..
T Consensus 132 ~----~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 132 M----ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred H----hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence 5 3566688999999999888888899999899999999999988888877776665 7888888888888888888
Q ss_pred HHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHH
Q 012414 165 LAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFL 244 (464)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 244 (464)
+..+++.|++|++|.+++|+.+...++..+.+.+.. ++.+...||.....+.+..+
T Consensus 208 Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~------------------------l~~~~~kGC~e~~le~l~~~ 263 (483)
T KOG4341|consen 208 LKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE------------------------LEKLSLKGCLELELEALLKA 263 (483)
T ss_pred HHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh------------------------hhhhhhcccccccHHHHHHH
Confidence 888888888888888888877766555555544444 44444456666666777777
Q ss_pred HhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHh
Q 012414 245 ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFN 324 (464)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 324 (464)
..+++.+..+++..|..+++.++..+...+..|+.+..++|.. +++..+.++...
T Consensus 264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-------------------------~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-------------------------ITDEVLWALGQH 318 (483)
T ss_pred hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-------------------------CchHHHHHHhcC
Confidence 7777777777777777778877777777777788888777765 566667777777
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHh---
Q 012414 325 CKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGS--- 401 (464)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~--- 401 (464)
+++|+.+.+..|..+++.++..+.+.++.|+.+++.+|..+.+..+..++.+|+.|+.+.+++|..++++|+..+..
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 88888888888888888888888878888888888888777777788888788888888888888888887776653
Q ss_pred cCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCccccee
Q 012414 402 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGL 460 (464)
Q Consensus 402 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l 460 (464)
....|+.+.+++|+.+++...+.+..|++|+++++.+|.+++..++..+...+|+++..
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 23578888888888888888888888888888888888888888888888888887654
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=6.7e-29 Score=211.10 Aligned_cols=326 Identities=25% Similarity=0.411 Sum_probs=236.8
Q ss_pred HHHHHhhC-CCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCC
Q 012414 57 LFILLDKY-PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGF 135 (464)
Q Consensus 57 ~~~~~~~~-~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 135 (464)
+..+.+++ ..++++.++||..+.+..+..+ ...++++++|.+.+|..+++.....+.+.|++|++|++..|..+
T Consensus 129 V~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~-----~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i 203 (483)
T KOG4341|consen 129 VENMISRCGGFLKELSLRGCRAVGDSSLRTF-----ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI 203 (483)
T ss_pred eehHhhhhccccccccccccccCCcchhhHH-----hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh
Confidence 44455555 4689999999999999888887 67899999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhc-CCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCc-ccCh
Q 012414 136 GDREAAALSF-ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL-KLTN 213 (464)
Q Consensus 136 ~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~ 213 (464)
++...+.++. +++|++|+++.|+.+...++..+.+++++++.+...+|.......+..+..+++.+..+++..| .+++
T Consensus 204 T~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 204 TDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred HHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc
Confidence 9999997775 9999999999999999999999999999999999999988888888888878888888877666 6666
Q ss_pred hHHHHhhc-ccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHH
Q 012414 214 DSFCSIAT-LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTT 292 (464)
Q Consensus 214 ~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 292 (464)
..+..+.. +..|+.|..++|..+++..+.++..++++|+.+.+.+|..+++.++..+..+++.|+.+++..|..
T Consensus 284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~----- 358 (483)
T KOG4341|consen 284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL----- 358 (483)
T ss_pred hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce-----
Confidence 66555554 666777777777666666666666666677766666666666666666655566666666555543
Q ss_pred HHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCcEEeccCCCCCChHH
Q 012414 293 LLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVS---GCVNLKTIDLTCCHSITDDA 369 (464)
Q Consensus 293 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~ 369 (464)
+.+..+..+..+|+.|+.+.++.|..++|.++..+.. ....|+.+.+++|+.+++..
T Consensus 359 --------------------~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 359 --------------------ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred --------------------ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 3333445555556666666666665566555544432 22455556666666555555
Q ss_pred HHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCC
Q 012414 370 ISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (464)
Q Consensus 370 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 413 (464)
++.+. .|++|+.+++.+|..++.+++..+..++|+++...+..
T Consensus 419 Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 419 LEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred HHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 55544 55566666666666666666666665566555554443
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.6e-28 Score=195.17 Aligned_cols=286 Identities=18% Similarity=0.245 Sum_probs=187.7
Q ss_pred CccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhcccccceee------cchhHHHHHHhhCCCceEEecccCCCC
Q 012414 5 SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRV------LRVEFLFILLDKYPYIKTLDLSVCPRV 78 (464)
Q Consensus 5 ~~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~l~~~~~~ 78 (464)
-.|+.|||||+..||+.|+ .+++.+++.|||||++++.+.+.|... +....+.++.++ ++..+.+.. ...
T Consensus 96 v~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar-~~~ 171 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLAR-SFM 171 (419)
T ss_pred CCcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcch-hhh
Confidence 4589999999999999999 999999999999999998776554432 223334444433 233333322 112
Q ss_pred CcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCC
Q 012414 79 NDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCL 158 (464)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 158 (464)
.+..+... ...+..+++++++++. .++...+..+...|..|+.|.+.+.. +.|.....+++..+|+.|+++.|.
T Consensus 172 ~~prlae~----~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 172 DQPRLAEH----FSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred cCchhhhh----hhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeecccccc
Confidence 22222222 2445677999999876 78888899999999999999999865 788888889999999999999999
Q ss_pred CCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCc--ccChhHHHHhh-cccCCceeEecCCCC
Q 012414 159 NVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL--KLTNDSFCSIA-TLAKLESLVMVGCPC 235 (464)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~l~-~~~~L~~L~l~~~~~ 235 (464)
+++..++.-+.++|+.|.+|++++|...++..-..+..--++|+.|+++++ .+-...+..+. ++|+|.+|+++++..
T Consensus 246 G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 246 GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 999999999999999999999999965555533333334567777777766 22222333322 255555555555544
Q ss_pred CChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCCh
Q 012414 236 VDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISD 315 (464)
Q Consensus 236 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 315 (464)
+.+..+..+.+ ++.|++|.++.|.. +....+-.+...|.|.+|++.++ +++
T Consensus 326 l~~~~~~~~~k-f~~L~~lSlsRCY~---------------------------i~p~~~~~l~s~psl~yLdv~g~-vsd 376 (419)
T KOG2120|consen 326 LKNDCFQEFFK-FNYLQHLSLSRCYD---------------------------IIPETLLELNSKPSLVYLDVFGC-VSD 376 (419)
T ss_pred cCchHHHHHHh-cchheeeehhhhcC---------------------------CChHHeeeeccCcceEEEEeccc-cCc
Confidence 44444444433 45555555555444 44444444444555555555554 445
Q ss_pred HHHHHHHHhCCCCc
Q 012414 316 SCFQTISFNCKSLV 329 (464)
Q Consensus 316 ~~~~~l~~~~~~L~ 329 (464)
..+..+...+|+|+
T Consensus 377 t~mel~~e~~~~lk 390 (419)
T KOG2120|consen 377 TTMELLKEMLSHLK 390 (419)
T ss_pred hHHHHHHHhCcccc
Confidence 55555555555554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=3.5e-23 Score=213.70 Aligned_cols=281 Identities=20% Similarity=0.172 Sum_probs=149.8
Q ss_pred HHHHhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCCh
Q 012414 58 FILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD 137 (464)
Q Consensus 58 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 137 (464)
...+..+++|+.|+++++. +.......+ .....+|++|+++++. +.... + ...+++|++|+++++. +..
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~-----~~~l~~L~~L~Ls~n~-l~~~~-p--~~~l~~L~~L~Ls~n~-~~~ 154 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQ-LSGPIPDDI-----FTTSSSLRYLNLSNNN-FTGSI-P--RGSIPNLETLDLSNNM-LSG 154 (968)
T ss_pred ChHHhCCCCCCEEECCCCc-cCCcCChHH-----hccCCCCCEEECcCCc-ccccc-C--ccccCCCCEEECcCCc-ccc
Confidence 3345567888888888743 332211112 2345678888877663 21100 0 0245677777777654 333
Q ss_pred HHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHH
Q 012414 138 REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFC 217 (464)
Q Consensus 138 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 217 (464)
.....+..+++|++|+++++ .+.......+. .+++|++|+++++ .+....... ...+++|+.|++++|.+......
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLT-NLTSLEFLTLASN-QLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred cCChHHhcCCCCCEEECccC-cccccCChhhh-hCcCCCeeeccCC-CCcCcCChH-HcCcCCccEEECcCCccCCcCCh
Confidence 33445667777777777763 33322222333 3777777777766 332211112 23566777777777766655555
Q ss_pred HhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHH
Q 012414 218 SIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM 297 (464)
Q Consensus 218 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (464)
.+.++++|++|+++++. +.......+. .+++|+.|+++++.. ... +...+..+++|++|+++++. +.......+
T Consensus 231 ~l~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l-~~~-~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~ 304 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNN-LTGPIPSSLG-NLKNLQYLFLYQNKL-SGP-IPPSIFSLQKLISLDLSDNS--LSGEIPELV 304 (968)
T ss_pred hHhcCCCCCEEECcCce-eccccChhHh-CCCCCCEEECcCCee-ecc-CchhHhhccCcCEEECcCCe--eccCCChhH
Confidence 56667777777777643 2222122222 266777777766432 111 11222345667777776664 333344455
Q ss_pred hcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCC
Q 012414 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362 (464)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (464)
.++++|+.|++++|.+.......+. .+++|+.|+++++. +... +......+++|+.|+++++
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNK-FSGE-IPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCC-CcCc-CChHHhCCCCCcEEECCCC
Confidence 5666777777766655433322222 56667777776643 2211 1112234566666666654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.5e-22 Score=207.36 Aligned_cols=375 Identities=15% Similarity=0.070 Sum_probs=205.7
Q ss_pred HHHHhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCCh
Q 012414 58 FILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD 137 (464)
Q Consensus 58 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 137 (464)
..+...+++|+.|+++++. +... + +....++|++|+++++. +....... ...+++|++|+++++. +..
T Consensus 111 ~~~~~~l~~L~~L~Ls~n~-l~~~----~----p~~~l~~L~~L~Ls~n~-~~~~~p~~-~~~l~~L~~L~L~~n~-l~~ 178 (968)
T PLN00113 111 DDIFTTSSSLRYLNLSNNN-FTGS----I----PRGSIPNLETLDLSNNM-LSGEIPND-IGSFSSLKVLDLGGNV-LVG 178 (968)
T ss_pred hHHhccCCCCCEEECcCCc-cccc----c----CccccCCCCEEECcCCc-ccccCChH-HhcCCCCCEEECccCc-ccc
Confidence 3455577899999998843 3221 1 13346788999998873 32222222 3478889999998764 333
Q ss_pred HHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHH
Q 012414 138 REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFC 217 (464)
Q Consensus 138 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 217 (464)
.....+..+++|++|+++++ .+.......+. .+++|++|+++++ .+.......+ ..+++|+.|++++|.+......
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASN-QLVGQIPRELG-QMKSLKWIYLGYN-NLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred cCChhhhhCcCCCeeeccCC-CCcCcCChHHc-CcCCccEEECcCC-ccCCcCChhH-hcCCCCCEEECcCceeccccCh
Confidence 34456777888888888874 33333233333 3788888888776 3332222222 3677888888888866655556
Q ss_pred HhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHH
Q 012414 218 SIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM 297 (464)
Q Consensus 218 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 297 (464)
.+.++++|+.|+++++. +.......+. .+++|++|+++++. +.. .+...+..+++|+.|+++++. +.......+
T Consensus 255 ~l~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~~L~~L~l~~n~--~~~~~~~~~ 328 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNK-LSGPIPPSIF-SLQKLISLDLSDNS-LSG-EIPELVIQLQNLEILHLFSNN--FTGKIPVAL 328 (968)
T ss_pred hHhCCCCCCEEECcCCe-eeccCchhHh-hccCcCEEECcCCe-ecc-CCChhHcCCCCCcEEECCCCc--cCCcCChhH
Confidence 67777888888887653 2222112222 26777777777653 221 122334456677777777665 333344455
Q ss_pred hcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHH-----------------------HHHhcCCCC
Q 012414 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGIT-----------------------QLVSGCVNL 354 (464)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-----------------------~~~~~~~~L 354 (464)
..+++|+.|++++|.+.......+. .+++|+.|+++++. +...... .....+++|
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNN-LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCe-eEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 6667777777777665433222222 45666666666542 2111111 111244555
Q ss_pred cEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEE
Q 012414 355 KTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFL 434 (464)
Q Consensus 355 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L 434 (464)
+.|++++| .++......+ ..+++|+.|+++++. ++... ......+++|+.|++++| .+..... .....++|+.|
T Consensus 407 ~~L~L~~n-~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~n-~~~~~~p-~~~~~~~L~~L 480 (968)
T PLN00113 407 RRVRLQDN-SFSGELPSEF-TKLPLVYFLDISNNN-LQGRI-NSRKWDMPSLQMLSLARN-KFFGGLP-DSFGSKRLENL 480 (968)
T ss_pred CEEECcCC-EeeeECChhH-hcCCCCCEEECcCCc-ccCcc-ChhhccCCCCcEEECcCc-eeeeecC-cccccccceEE
Confidence 55555553 2222111111 245566666665543 22211 111124566777777664 3332211 11235677888
Q ss_pred ecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 435 KLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 435 ~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
++++| .++...... +..+++|+.|++++
T Consensus 481 ~ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 481 DLSRN-QFSGAVPRK-LGSLSELMQLKLSE 508 (968)
T ss_pred ECcCC-ccCCccChh-hhhhhccCEEECcC
Confidence 88877 444322222 24668888888763
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.5e-23 Score=184.68 Aligned_cols=345 Identities=19% Similarity=0.169 Sum_probs=171.1
Q ss_pred eEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhc-C
Q 012414 68 KTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF-A 146 (464)
Q Consensus 68 ~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~ 146 (464)
+.++.++ ..+....+..+ .....+..+.|+++++ .+....+..+. .+|||+++++..+. ++ .++.++. .
T Consensus 55 ~lldcs~-~~lea~~~~~l----~g~lp~~t~~LdlsnN-kl~~id~~~f~-nl~nLq~v~l~~N~-Lt--~IP~f~~~s 124 (873)
T KOG4194|consen 55 RLLDCSD-RELEAIDKSRL----KGFLPSQTQTLDLSNN-KLSHIDFEFFY-NLPNLQEVNLNKNE-LT--RIPRFGHES 124 (873)
T ss_pred eeeecCc-ccccccccccc----CCcCccceeeeecccc-ccccCcHHHHh-cCCcceeeeeccch-hh--hcccccccc
Confidence 3344443 33444444444 3444556667777766 34333344333 67777777777542 21 1222222 4
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCc
Q 012414 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (464)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 226 (464)
.+|++|++.+ +.++...-..+.. .+.|++|+++.+ .++......+ ..-.++++|++++|.+++.....+..+.+|.
T Consensus 125 ghl~~L~L~~-N~I~sv~se~L~~-l~alrslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 125 GHLEKLDLRH-NLISSVTSEELSA-LPALRSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cceeEEeeec-cccccccHHHHHh-Hhhhhhhhhhhc-hhhcccCCCC-CCCCCceEEeeccccccccccccccccchhe
Confidence 5577777766 3333332223222 566666666653 2221111111 1234566666666666555555555555666
Q ss_pred eeEecCCCCCChhHHHHHHhcCCCCceeecccccccChh-HHH----------------------HHHhcCCCCcEEecc
Q 012414 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSST-GLI----------------------SVIRGHSGLLQLDAG 283 (464)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~----------------------~~~~~~~~L~~L~l~ 283 (464)
.|.++. +.++.-....+.. +|+|+.|++..+. +... ++. ..+-.+.++++|+++
T Consensus 201 tlkLsr-NrittLp~r~Fk~-L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 201 TLKLSR-NRITTLPQRSFKR-LPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred eeeccc-CcccccCHHHhhh-cchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 666654 2233333333322 5555555554421 1110 000 011124455666655
Q ss_pred CCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCC
Q 012414 284 HCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCH 363 (464)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 363 (464)
.+. +..---..+.+++.|+.|+++.|.+......... .+++|+.|+++++ .++.-.-..+ ..+..|++|.++. +
T Consensus 278 ~N~--l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~-N 351 (873)
T KOG4194|consen 278 TNR--LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSH-N 351 (873)
T ss_pred cch--hhhhhcccccccchhhhhccchhhhheeecchhh-hcccceeEecccc-ccccCChhHH-HHHHHhhhhcccc-c
Confidence 544 3333334455566666666666654443333332 5667777777663 3332222222 2344667777765 3
Q ss_pred CCChHHHHHHHhcCCCCcEEeccCCCC---CcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCc
Q 012414 364 SITDDAISAIADSCRGLVCLKIESCNM---ITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 439 (464)
Q Consensus 364 ~l~~~~~~~l~~~~~~L~~L~l~~~~~---~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~ 439 (464)
.++.-.- .....+.+|++|+++.+.. +.| +-.. ...+++|++|.+.| +++....-.++.++++|+.|++.+|
T Consensus 352 si~~l~e-~af~~lssL~~LdLr~N~ls~~IED-aa~~-f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 352 SIDHLAE-GAFVGLSSLHKLDLRSNELSWCIED-AAVA-FNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred chHHHHh-hHHHHhhhhhhhcCcCCeEEEEEec-chhh-hccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 3332211 1122456777777766431 122 2222 23567777777777 6777766677777777777777777
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=7.5e-23 Score=181.72 Aligned_cols=362 Identities=17% Similarity=0.172 Sum_probs=238.9
Q ss_pred HhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHH
Q 012414 61 LDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREA 140 (464)
Q Consensus 61 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 140 (464)
+...|+|+++++.. +. +..++. ......++++|+|.++ .++...-..+. .+|.|+.|+++.+. +.....
T Consensus 98 f~nl~nLq~v~l~~-N~-----Lt~IP~--f~~~sghl~~L~L~~N-~I~sv~se~L~-~l~alrslDLSrN~-is~i~~ 166 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNK-NE-----LTRIPR--FGHESGHLEKLDLRHN-LISSVTSEELS-ALPALRSLDLSRNL-ISEIPK 166 (873)
T ss_pred HhcCCcceeeeecc-ch-----hhhccc--ccccccceeEEeeecc-ccccccHHHHH-hHhhhhhhhhhhch-hhcccC
Confidence 45667777777765 22 222321 1334456888888776 33333333333 56788888888643 444444
Q ss_pred HHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhh
Q 012414 141 AALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIA 220 (464)
Q Consensus 141 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~ 220 (464)
..+..-+++++|++.+ +.++......+.. +.+|..|.++.+ .++..... .++.+|+|+.|++..|.+.....-.+.
T Consensus 167 ~sfp~~~ni~~L~La~-N~It~l~~~~F~~-lnsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN~irive~ltFq 242 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLAS-NRITTLETGHFDS-LNSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRNRIRIVEGLTFQ 242 (873)
T ss_pred CCCCCCCCceEEeecc-ccccccccccccc-cchheeeecccC-cccccCHH-Hhhhcchhhhhhccccceeeehhhhhc
Confidence 5555667888888887 5677665555554 778888888876 44433332 334688899999988877655555567
Q ss_pred cccCCceeEecCCC--CCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHh
Q 012414 221 TLAKLESLVMVGCP--CVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR 298 (464)
Q Consensus 221 ~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 298 (464)
.+++|+.|.+.... .+.|..+ .++.++++|++..+. +.... ...+-+++.|+.|+++++. +.......+.
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~F----y~l~kme~l~L~~N~-l~~vn-~g~lfgLt~L~~L~lS~Na--I~rih~d~Ws 314 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAF----YGLEKMEHLNLETNR-LQAVN-EGWLFGLTSLEQLDLSYNA--IQRIHIDSWS 314 (873)
T ss_pred CchhhhhhhhhhcCcccccCcce----eeecccceeecccch-hhhhh-cccccccchhhhhccchhh--hheeecchhh
Confidence 78888888887532 2222222 237889999987643 22111 1233457899999999887 6666677788
Q ss_pred cCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCh--HHHHHHHhc
Q 012414 299 DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITD--DAISAIADS 376 (464)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~ 376 (464)
.+++|+.|+|+.|.++.-.-..+. .+..|++|.++.+ .++...-..+ ..+.+|++|+++.+ .++. +.-.....+
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~N-si~~l~e~af-~~lssL~~LdLr~N-~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHN-SIDHLAEGAF-VGLSSLHKLDLRSN-ELSWCIEDAAVAFNG 390 (873)
T ss_pred hcccceeEeccccccccCChhHHH-HHHHhhhhccccc-chHHHHhhHH-HHhhhhhhhcCcCC-eEEEEEecchhhhcc
Confidence 899999999999976544433433 5568999999874 4544332333 46789999999874 3321 112223346
Q ss_pred CCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhc
Q 012414 377 CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASN 453 (464)
Q Consensus 377 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~ 453 (464)
++.|+.|++.++. +....-.++. ++++|++|+|.+ +-|...-..+|..+ .|+.|.+..-..+-|..+..+.+.
T Consensus 391 l~~LrkL~l~gNq-lk~I~krAfs-gl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQ-LKSIPKRAFS-GLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred chhhhheeecCce-eeecchhhhc-cCcccceecCCC-Ccceeecccccccc-hhhhhhhcccceEEeccHHHHHHH
Confidence 9999999999854 6666555555 889999999999 77776667777777 899998876656666666666543
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=7.2e-17 Score=145.70 Aligned_cols=248 Identities=19% Similarity=0.228 Sum_probs=102.4
Q ss_pred HHHHhcCCCccEEeccCCCccCHHHHHHH---HhcCCCCcEEEccCcccC--hhHH----HHhhcccCCceeEecCCCCC
Q 012414 166 AKIAVRCVNLERLSLKWCMEISDLGIDLL---CKKCLDLKSLDVSYLKLT--NDSF----CSIATLAKLESLVMVGCPCV 236 (464)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~--~~~~----~~l~~~~~L~~L~l~~~~~~ 236 (464)
..+...+++|++|+++++ .+++.+...+ ....++++.++++++.+. ...+ ..+..+++|+.|+++++...
T Consensus 16 ~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 16 TELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 333333445555555554 3433332222 223445555555555433 1111 22333555666666554321
Q ss_pred C--hhHHHHHHhcCCCCceeecccccccChhHHHH---HHhcC-CCCcEEeccCCCcccc---HHHHHHHhcCCCCcEEE
Q 012414 237 D--DTGLRFLESGCPLLKTIFVSRCKFVSSTGLIS---VIRGH-SGLLQLDAGHCFSELS---TTLLHHMRDLKNLEAIT 307 (464)
Q Consensus 237 ~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~-~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~ 307 (464)
. ...+..+... ++|++|+++++. +.+.+... ....+ ++|+.|++++|.. .. ......+..+++|+.|+
T Consensus 95 ~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 95 PDGCGVLESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRL-EGASCEALAKALRANRDLKELN 171 (319)
T ss_pred hhHHHHHHHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcC-CchHHHHHHHHHHhCCCcCEEE
Confidence 1 1122222222 346666655543 22222221 22223 5555666555542 11 12223333444555555
Q ss_pred cCCCCCChHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHH---HhcCCCCcEEeccCCCCCChHHHHHHHhcC----
Q 012414 308 MDGARISDSCFQTISF---NCKSLVEIGLSKCLGVTNTGITQL---VSGCVNLKTIDLTCCHSITDDAISAIADSC---- 377 (464)
Q Consensus 308 l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---- 377 (464)
++++.+.+.++..+.. .+++|+.|++++| .+.+.+...+ ...+++|++|++++| .+++.++..+...+
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPN 249 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccC
Confidence 5555554443333322 2235555555543 2333332222 223345555555553 34444444333322
Q ss_pred CCCcEEeccCCCCCcHHHHHHHH---hcCCCccEEecCCCCCCChHH
Q 012414 378 RGLVCLKIESCNMITEKGLYQLG---SFCLRLEEIDLTDCNGVNDKG 421 (464)
Q Consensus 378 ~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~c~~i~~~~ 421 (464)
+.|++|++++|. +++.+...+. ..+++|+.+++++ +.+++++
T Consensus 250 ~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~ 294 (319)
T cd00116 250 ISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEG 294 (319)
T ss_pred CCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHH
Confidence 355555555443 3333332222 1223455555555 3444443
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=7.1e-17 Score=145.73 Aligned_cols=277 Identities=23% Similarity=0.255 Sum_probs=194.0
Q ss_pred EeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHh----hcccCCceeEecCCCCCC--hhHHHH---HHhcC
Q 012414 178 LSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSI----ATLAKLESLVMVGCPCVD--DTGLRF---LESGC 248 (464)
Q Consensus 178 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~--~~~~~~---l~~~~ 248 (464)
|++.++ .+.+.....++...++|+.++++++.+++.....+ ...++++++.+.++. +. ...+.. ....+
T Consensus 3 l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGE-LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccC-cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhc
Confidence 455444 45544555666677789999999998877654443 357789999998754 33 223322 22237
Q ss_pred CCCceeeccccccc--ChhHHHHHHhcCCCCcEEeccCCCccccHH----HHHHHhcC-CCCcEEEcCCCCCChHHHHH-
Q 012414 249 PLLKTIFVSRCKFV--SSTGLISVIRGHSGLLQLDAGHCFSELSTT----LLHHMRDL-KNLEAITMDGARISDSCFQT- 320 (464)
Q Consensus 249 ~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~~~- 320 (464)
++|+.|+++++... ....+..+... ++|++|+++++. +... ....+..+ ++|+.|++++|.++......
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~--~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG--LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc--cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 89999999987543 22233344444 679999999987 3422 23445567 89999999999987544333
Q ss_pred --HHHhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCcEEeccCCCCCChHHHHHHH---hcCCCCcEEeccCCCCCc
Q 012414 321 --ISFNCKSLVEIGLSKCLGVTNTGITQLVS---GCVNLKTIDLTCCHSITDDAISAIA---DSCRGLVCLKIESCNMIT 392 (464)
Q Consensus 321 --l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~ 392 (464)
....+++|+.|++++| .+.+.++..+.. ..++|+.|++++| .+++.....+. ..+++|+.|++++|+ ++
T Consensus 158 ~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~ 234 (319)
T cd00116 158 AKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LT 234 (319)
T ss_pred HHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-Cc
Confidence 3345678999999985 577666554433 4569999999997 67776655443 357899999999986 88
Q ss_pred HHHHHHHHhcC----CCccEEecCCCCCCChHHHHHh----hcCCCccEEecCCccCCChHHHHHHHh---cC-ccccee
Q 012414 393 EKGLYQLGSFC----LRLEEIDLTDCNGVNDKGLEYL----SRCSELLFLKLGLCENISDKGLFYIAS---NC-LRIQGL 460 (464)
Q Consensus 393 ~~~~~~l~~~~----~~L~~L~l~~c~~i~~~~~~~l----~~~~~L~~L~l~~~~~i~~~~~~~~~~---~~-~~L~~l 460 (464)
+.++..++..+ +.|++|++++| .+++.+...+ ..+++|+.+++++| .+++.+...+++ .. ++|+++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhc
Confidence 87887777654 79999999996 8876665444 35789999999999 888776555443 33 588888
Q ss_pred eecC
Q 012414 461 DLYK 464 (464)
Q Consensus 461 ~l~~ 464 (464)
++.+
T Consensus 313 ~~~~ 316 (319)
T cd00116 313 WVKD 316 (319)
T ss_pred ccCC
Confidence 8753
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.5e-18 Score=140.70 Aligned_cols=251 Identities=16% Similarity=0.234 Sum_probs=196.6
Q ss_pred CcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChh-HHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcE
Q 012414 201 LKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDT-GLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (464)
Q Consensus 201 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (464)
=+.+|+.+-.+.+..+..+.+ .....+.+... .+.+. ..+.+...-.+|++++++. ..++...+..+++.|..|+.
T Consensus 138 W~~lDl~~r~i~p~~l~~l~~-rgV~v~Rlar~-~~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 138 WQTLDLTGRNIHPDVLGRLLS-RGVIVFRLARS-FMDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeeccCCCccChhHHHHHHh-CCeEEEEcchh-hhcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhh
Confidence 356677666666666655543 23344444432 12222 2333333236799999987 45788888889999999999
Q ss_pred EeccCCCccccHHHHHHHhcCCCCcEEEcCCCC-CChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEe
Q 012414 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR-ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTID 358 (464)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 358 (464)
|.+.+.. +++.....+++-.+|+.|+++.+. ++..++..+...|..|..|++++|...++..-..+..-.++|+.|+
T Consensus 215 lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LN 292 (419)
T KOG2120|consen 215 LSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLN 292 (419)
T ss_pred ccccccc--cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhh
Confidence 9999887 788899999999999999999986 8999999999999999999999998777663333444458999999
Q ss_pred ccCCC-CCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecC
Q 012414 359 LTCCH-SITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLG 437 (464)
Q Consensus 359 l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~ 437 (464)
++||. ++.+..+..+...||+|.+|++++|..+++..+..+. .++.|++|.++.|..+..+.+-.+...|+|.+|++.
T Consensus 293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence 99984 4555678888889999999999999999986665555 899999999999999999888888889999999999
Q ss_pred CccCCChHHHHHHHhcCcccce
Q 012414 438 LCENISDKGLFYIASNCLRIQG 459 (464)
Q Consensus 438 ~~~~i~~~~~~~~~~~~~~L~~ 459 (464)
+| +.+..++.+-+.||+|+.
T Consensus 372 g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 372 GC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred cc--cCchHHHHHHHhCccccc
Confidence 98 667778888888898763
No 11
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.70 E-value=2.5e-16 Score=150.98 Aligned_cols=254 Identities=33% Similarity=0.513 Sum_probs=107.6
Q ss_pred CCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCc--ccChhH---HHHhhcccCCceeEecCCCCCChhHHHHHHh
Q 012414 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL--KLTNDS---FCSIATLAKLESLVMVGCPCVDDTGLRFLES 246 (464)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 246 (464)
+++|+.+.+.+|..+.+.++..+...+++|++|+++++ ...... ......+++|++|++..+..+++.++..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 44444444444444444444444444444444444431 111111 1111224455555555544455555555555
Q ss_pred cCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHH-HhcCCCCcEEEcCCCCCChHHHHHHHHhC
Q 012414 247 GCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHH-MRDLKNLEAITMDGARISDSCFQTISFNC 325 (464)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 325 (464)
.|++|+.|.+.+|..+++.++..+...+++|++|++++|.. +.+..... ...+++++.|.+.... .|
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~-~~d~~l~~~~~~c~~l~~l~~~~~~-----------~c 334 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG-LTDSGLEALLKNCPNLRELKLLSLN-----------GC 334 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc-chHHHHHHHHHhCcchhhhhhhhcC-----------CC
Confidence 45555555555444455555555555555555555555544 22221111 1123333332222110 02
Q ss_pred CCCcEEecCCCCCCC-HHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCC
Q 012414 326 KSLVEIGLSKCLGVT-NTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCL 404 (464)
Q Consensus 326 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 404 (464)
+.++.+.+.++.... +.........+++++.+.+..|. ..+.+. .+.+.+|+.++ .++......+.
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~-----------~~~l~gc~~l~-~~l~~~~~~~~ 401 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL-----------ELSLRGCPNLT-ESLELRLCRSD 401 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch-----------HHHhcCCcccc-hHHHHHhccCC
Confidence 223333332222222 12222223334444444444433 222222 23333344343 33333333333
Q ss_pred CccEEecCCCCCCChHHHHHhhc-CCCccEEecCCccCCChHHHHHH
Q 012414 405 RLEEIDLTDCNGVNDKGLEYLSR-CSELLFLKLGLCENISDKGLFYI 450 (464)
Q Consensus 405 ~L~~L~l~~c~~i~~~~~~~l~~-~~~L~~L~l~~~~~i~~~~~~~~ 450 (464)
.++.|++..|..+++..+..... +.+++.+++.+|+.++......+
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 448 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGF 448 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhh
Confidence 45666666665566555555544 55566666666655555554433
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.60 E-value=8.5e-15 Score=152.01 Aligned_cols=292 Identities=16% Similarity=0.190 Sum_probs=152.2
Q ss_pred CCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCC
Q 012414 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD 200 (464)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 200 (464)
..+|++|++.++. +. ..+..+..+++|+.|+++++..+.... .+ ..+++|+.|++.+|..+.. +..-...+++
T Consensus 610 ~~~L~~L~L~~s~-l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~l-s~l~~Le~L~L~~c~~L~~--lp~si~~L~~ 682 (1153)
T PLN03210 610 PENLVKLQMQGSK-LE-KLWDGVHSLTGLRNIDLRGSKNLKEIP--DL-SMATNLETLKLSDCSSLVE--LPSSIQYLNK 682 (1153)
T ss_pred ccCCcEEECcCcc-cc-ccccccccCCCCCEEECCCCCCcCcCC--cc-ccCCcccEEEecCCCCccc--cchhhhccCC
Confidence 4567777776643 22 122334556777777777654333211 12 2367777777777654432 1122235667
Q ss_pred CcEEEccCc-ccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcE
Q 012414 201 LKSLDVSYL-KLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (464)
Q Consensus 201 L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (464)
|+.|++++| .+.. ... ..++++|+.|++++|..+.. +....++|+.|++.++. +.. ++... .+++|++
T Consensus 683 L~~L~L~~c~~L~~-Lp~-~i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~~--lP~~~-~l~~L~~ 751 (1153)
T PLN03210 683 LEDLDMSRCENLEI-LPT-GINLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IEE--FPSNL-RLENLDE 751 (1153)
T ss_pred CCEEeCCCCCCcCc-cCC-cCCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCc-ccc--ccccc-ccccccc
Confidence 777777766 2221 111 11466777777777653321 11223566777766543 111 11111 2456666
Q ss_pred EeccCCCcc-ccH----HHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012414 280 LDAGHCFSE-LST----TLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNL 354 (464)
Q Consensus 280 L~l~~~~~~-~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 354 (464)
|.+..+... +.. .........++|+.|++++|.........+ ..+++|+.|++++|..+.. +.... .+++|
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL 827 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLET--LPTGI-NLESL 827 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCe--eCCCC-Ccccc
Confidence 666543210 000 000011224577777777764222211222 3677788888877765442 11111 45677
Q ss_pred cEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEE
Q 012414 355 KTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFL 434 (464)
Q Consensus 355 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L 434 (464)
+.|++++|..+.. +....++|+.|+++++. ++.. ..-...+++|+.|++++|+.+..... .+..+++|+.+
T Consensus 828 ~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~-i~~i--P~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L 898 (1153)
T PLN03210 828 ESLDLSGCSRLRT-----FPDISTNISDLNLSRTG-IEEV--PWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETV 898 (1153)
T ss_pred CEEECCCCCcccc-----ccccccccCEeECCCCC-CccC--hHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCee
Confidence 8888887765432 12223577777777643 4321 22234677888888888877765332 23457777777
Q ss_pred ecCCccCCC
Q 012414 435 KLGLCENIS 443 (464)
Q Consensus 435 ~l~~~~~i~ 443 (464)
++++|..++
T Consensus 899 ~l~~C~~L~ 907 (1153)
T PLN03210 899 DFSDCGALT 907 (1153)
T ss_pred ecCCCcccc
Confidence 877776554
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.57 E-value=2.8e-14 Score=136.90 Aligned_cols=262 Identities=28% Similarity=0.453 Sum_probs=165.3
Q ss_pred CCCcEEEccCc--ccChhHHHHhh-cccCCceeEecCCCCCChhHHHHHHhcCCCCceeeccc-ccccChh--HHHHHHh
Q 012414 199 LDLKSLDVSYL--KLTNDSFCSIA-TLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSR-CKFVSST--GLISVIR 272 (464)
Q Consensus 199 ~~L~~L~l~~~--~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~--~~~~~~~ 272 (464)
..++.+..... .........+. .++.|+.|.+.+|..+.+.++..+...+++|+.|++++ +...... ....+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 34444444333 33333334433 36777777777777677666666666677777777766 2222222 2333555
Q ss_pred cCCCCcEEeccCCCccccHHHHHHHhc-CCCCcEEEcCCCC-CChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 012414 273 GHSGLLQLDAGHCFSELSTTLLHHMRD-LKNLEAITMDGAR-ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSG 350 (464)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (464)
.+++|+++++.++.. +++..+..+.. +++|+.|.+.++. +++.++..+...|++|++|++++|..+++.++..+...
T Consensus 241 ~~~~L~~l~l~~~~~-isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGL-VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hcCCcCccchhhhhc-cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 567777777777765 56666555554 6777777766665 67788888877788888888888777777777777667
Q ss_pred CCCCcEEeccCC---CCCChHHHHHHHhcCC-CCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhh
Q 012414 351 CVNLKTIDLTCC---HSITDDAISAIADSCR-GLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLS 426 (464)
Q Consensus 351 ~~~L~~L~l~~~---~~l~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~ 426 (464)
|++|+.|.+..+ ..+++..+..+....+ .+..+.+.+|+.+++..+.... .......+.+.+|+.++ +.+....
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~ 397 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRL 397 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHh
Confidence 777666654443 3456665555554342 5666666666666666655544 22222256666777776 5555444
Q ss_pred -cCCCccEEecCCccCCChHHHHHHHhcCcccceeeec
Q 012414 427 -RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY 463 (464)
Q Consensus 427 -~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~ 463 (464)
.+..++.|++..|..+++..+......|..++.++++
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~ 435 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLS 435 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCcc
Confidence 3444899999999889988888876557777766654
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=1.9e-14 Score=149.45 Aligned_cols=264 Identities=16% Similarity=0.238 Sum_probs=141.6
Q ss_pred cCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCC
Q 012414 171 RCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPL 250 (464)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 250 (464)
.+++|+.|+++++..+.... . ...+++|+.|++.+|.........+.++++|+.|++++|..+...... ..+++
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~s 705 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INLKS 705 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCCCC
Confidence 35666666666543322111 1 123566666666665322233334555666666666665443321110 02456
Q ss_pred CceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCCh-----HHH-HHHHHh
Q 012414 251 LKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISD-----SCF-QTISFN 324 (464)
Q Consensus 251 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~-~~l~~~ 324 (464)
|+.|++++|..+.. +....++|+.|+++++.. .. + .....+++|+.|.+.++.... ..+ ......
T Consensus 706 L~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~i--~~-l-P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 706 LYRLNLSGCSRLKS-----FPDISTNISWLDLDETAI--EE-F-PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCEEeCCCCCCccc-----cccccCCcCeeecCCCcc--cc-c-cccccccccccccccccchhhccccccccchhhhhc
Confidence 66666666543221 111134566666655531 11 1 111135566666665532100 000 011123
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCC
Q 012414 325 CKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCL 404 (464)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 404 (464)
+++|+.|++++|..+.. +......+++|+.|++++|..+..- .... .+++|+.|++++|..+.. +....+
T Consensus 777 ~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~ 846 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESLDLSGCSRLRT-----FPDIST 846 (1153)
T ss_pred cccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEEECCCCCcccc-----cccccc
Confidence 46888888887654433 2223457888999999988765431 1111 468899999999876542 122346
Q ss_pred CccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeec
Q 012414 405 RLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY 463 (464)
Q Consensus 405 ~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~ 463 (464)
+|+.|++++ +.++.. ...+..+++|+.|++.+|.++..... ....+++|+.++++
T Consensus 847 nL~~L~Ls~-n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 847 NISDLNLSR-TGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFS 901 (1153)
T ss_pred ccCEeECCC-CCCccC-hHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecC
Confidence 899999988 577643 34566799999999999987765322 22344555555443
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.51 E-value=2.6e-16 Score=142.04 Aligned_cols=270 Identities=17% Similarity=0.176 Sum_probs=121.0
Q ss_pred CCCceEEecccCCCCC-cchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHH
Q 012414 64 YPYIKTLDLSVCPRVN-DGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAA 142 (464)
Q Consensus 64 ~~~l~~l~l~~~~~~~-~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 142 (464)
.|.++-+++++ +.++ +.....+ ...++++-|.+.... + ..++.-..++.+|++|.+..+... .....
T Consensus 6 LpFVrGvDfsg-NDFsg~~FP~~v------~qMt~~~WLkLnrt~-L--~~vPeEL~~lqkLEHLs~~HN~L~--~vhGE 73 (1255)
T KOG0444|consen 6 LPFVRGVDFSG-NDFSGDRFPHDV------EQMTQMTWLKLNRTK-L--EQVPEELSRLQKLEHLSMAHNQLI--SVHGE 73 (1255)
T ss_pred cceeecccccC-CcCCCCcCchhH------HHhhheeEEEechhh-h--hhChHHHHHHhhhhhhhhhhhhhH--hhhhh
Confidence 35566666666 3233 2222211 233556666665432 1 112222235667777777664311 12223
Q ss_pred hhcCCCCcEEecCCCCCCCHHHH-HHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhc
Q 012414 143 LSFASGLKEVKLDKCLNVTDVGL-AKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIAT 221 (464)
Q Consensus 143 l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 221 (464)
++.+|.|+++.+.. +++...++ ..+.. +..|+.|+++.+ .+.. +..-..+..++-.|++++|.+....-.-+.+
T Consensus 74 Ls~Lp~LRsv~~R~-N~LKnsGiP~diF~-l~dLt~lDLShN-qL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfin 148 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRD-NNLKNSGIPTDIFR-LKDLTILDLSHN-QLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFIN 148 (1255)
T ss_pred hccchhhHHHhhhc-cccccCCCCchhcc-cccceeeecchh-hhhh--cchhhhhhcCcEEEEcccCccccCCchHHHh
Confidence 45566666666665 33333322 22222 666666666654 2221 1111123456666666666554333333444
Q ss_pred ccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCC
Q 012414 222 LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLK 301 (464)
Q Consensus 222 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 301 (464)
+..|-.|++++.. +.. -..++.. +.+|++|.++++.. ....+.+ ++.+++|+.|++++... ....+...+..+.
T Consensus 149 LtDLLfLDLS~Nr-Le~-LPPQ~RR-L~~LqtL~Ls~NPL-~hfQLrQ-LPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNR-LEM-LPPQIRR-LSMLQTLKLSNNPL-NHFQLRQ-LPSMTSLSVLHMSNTQR-TLDNIPTSLDDLH 222 (1255)
T ss_pred hHhHhhhccccch-hhh-cCHHHHH-HhhhhhhhcCCChh-hHHHHhc-Cccchhhhhhhcccccc-hhhcCCCchhhhh
Confidence 5555555555421 111 1111111 45566666655321 1111111 12334455555555443 3444455555566
Q ss_pred CCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccC
Q 012414 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (464)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (464)
+|..++++.|+++.. +.-....++|+.|+++++ .++..... ...+.+|++|+++.
T Consensus 223 NL~dvDlS~N~Lp~v--Pecly~l~~LrrLNLS~N-~iteL~~~--~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 223 NLRDVDLSENNLPIV--PECLYKLRNLRRLNLSGN-KITELNMT--EGEWENLETLNLSR 277 (1255)
T ss_pred hhhhccccccCCCcc--hHHHhhhhhhheeccCcC-ceeeeecc--HHHHhhhhhhcccc
Confidence 666666666643221 111124456666666653 34332111 12344566666665
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.51 E-value=8.5e-13 Score=111.21 Aligned_cols=199 Identities=22% Similarity=0.294 Sum_probs=125.3
Q ss_pred CCCCceeecccccccCh---hHHHHHHhcCCCCcEEeccCCCccccHHHHHH-------------HhcCCCCcEEEcCCC
Q 012414 248 CPLLKTIFVSRCKFVSS---TGLISVIRGHSGLLQLDAGHCFSELSTTLLHH-------------MRDLKNLEAITMDGA 311 (464)
Q Consensus 248 ~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~ 311 (464)
+|+|+.++|+++. +.. .++..+++++.+|++|.+.+|. +....-.. ...-+.|+.+....|
T Consensus 91 ~~~L~~ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~G--lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 91 CPKLQKLDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNCG--LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred CCceeEeeccccc-cCccchHHHHHHHHhccCHHHHhhhcCC--CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 5666666666642 222 3444556666777777776665 33332222 223457888888888
Q ss_pred CCChHHH---HHHHHhCCCCcEEecCCCCCCCHHHHHH---HHhcCCCCcEEeccCCCCCChHHHHHHHh---cCCCCcE
Q 012414 312 RISDSCF---QTISFNCKSLVEIGLSKCLGVTNTGITQ---LVSGCVNLKTIDLTCCHSITDDAISAIAD---SCRGLVC 382 (464)
Q Consensus 312 ~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~ 382 (464)
.+.+.+. ....+.++.|+.+.+..+ .+...+... -+..|++|+.|++.. +.++..+-..++. .+|+|++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchhee
Confidence 7655443 333455678888888773 454444422 234678888888887 4556555444433 4677888
Q ss_pred EeccCCCCCcHHHHHHHHh----cCCCccEEecCCCCCCChHHHHHhh----cCCCccEEecCCccCC--ChHHHHHHHh
Q 012414 383 LKIESCNMITEKGLYQLGS----FCLRLEEIDLTDCNGVNDKGLEYLS----RCSELLFLKLGLCENI--SDKGLFYIAS 452 (464)
Q Consensus 383 L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~c~~i~~~~~~~l~----~~~~L~~L~l~~~~~i--~~~~~~~~~~ 452 (464)
|++++|. +.+.|..+++. ..|+|+.|.+.+ +.++.++...+. ..|.|+.|++.+| .+ .+.++..++.
T Consensus 246 l~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 246 LNLGDCL-LENEGAIAFVDALKESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIAS 322 (382)
T ss_pred ecccccc-cccccHHHHHHHHhccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHH
Confidence 8888886 66666555443 357888888888 588777665554 3678888888888 55 5566666665
Q ss_pred cC
Q 012414 453 NC 454 (464)
Q Consensus 453 ~~ 454 (464)
..
T Consensus 323 ~~ 324 (382)
T KOG1909|consen 323 KF 324 (382)
T ss_pred hc
Confidence 55
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.49 E-value=4.3e-16 Score=140.65 Aligned_cols=342 Identities=16% Similarity=0.109 Sum_probs=206.6
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (464)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (464)
..+-++-++++++ .++...++.-.+.+.+++.|.+.... -...+..++.+.+|++|.+.+ +.+.. ....+.. +|
T Consensus 5 VLpFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnrt~--L~~vPeEL~~lqkLEHLs~~H-N~L~~-vhGELs~-Lp 78 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNRTK--LEQVPEELSRLQKLEHLSMAH-NQLIS-VHGELSD-LP 78 (1255)
T ss_pred ccceeecccccCC-cCCCCcCchhHHHhhheeEEEechhh--hhhChHHHHHHhhhhhhhhhh-hhhHh-hhhhhcc-ch
Confidence 4466777888877 44433344444467789999987632 233456788899999999987 33322 2233333 88
Q ss_pred CccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCce
Q 012414 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (464)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (464)
.|+.+.++.+ ++...++..-.-.+..|+.|++++|.+.+ ....+-.-+++-.|+++.. .+....-. +..++..|-.
T Consensus 79 ~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N-~IetIPn~-lfinLtDLLf 154 (1255)
T KOG0444|consen 79 RLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYN-NIETIPNS-LFINLTDLLF 154 (1255)
T ss_pred hhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccC-ccccCCch-HHHhhHhHhh
Confidence 8999988876 55544443333367899999999997754 3445566778888998863 34332211 2223556667
Q ss_pred eecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEec
Q 012414 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (464)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (464)
|+++.+. -+.++.-...+..|++|.+++++ +.......+..+++|+.|.+++++-+-..++.-...+.+|..+++
T Consensus 155 LDLS~Nr---Le~LPPQ~RRL~~LqtL~Ls~NP--L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 155 LDLSNNR---LEMLPPQIRRLSMLQTLKLSNNP--LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hccccch---hhhcCHHHHHHhhhhhhhcCCCh--hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 7887643 22233334456789999999887 455555666677788888888875443333333346678999999
Q ss_pred CCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCC
Q 012414 334 SKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (464)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 413 (464)
+.+ +++. +..-+-..++|+.|++++ +.++.-.+.. ..+.+|++|+++.+. ++. +..-.-.++.|++|.+.+
T Consensus 230 S~N-~Lp~--vPecly~l~~LrrLNLS~-N~iteL~~~~--~~W~~lEtLNlSrNQ-Lt~--LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 230 SEN-NLPI--VPECLYKLRNLRRLNLSG-NKITELNMTE--GEWENLETLNLSRNQ-LTV--LPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred ccc-CCCc--chHHHhhhhhhheeccCc-CceeeeeccH--HHHhhhhhhccccch-hcc--chHHHhhhHHHHHHHhcc
Confidence 874 4442 223333678999999998 4665433221 124567777776643 221 111111334555554444
Q ss_pred CCCCChHH------------------------HHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeec
Q 012414 414 CNGVNDKG------------------------LEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY 463 (464)
Q Consensus 414 c~~i~~~~------------------------~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~ 463 (464)
++++-++ .+.+.+|+.|+.|.+..|.-|+-..-- --+|.|+.||++
T Consensus 301 -NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaI---HlL~~l~vLDlr 370 (1255)
T KOG0444|consen 301 -NKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAI---HLLPDLKVLDLR 370 (1255)
T ss_pred -CcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhh---hhcCCcceeecc
Confidence 3333222 234456778888888777655543222 234777777765
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.40 E-value=2e-11 Score=103.05 Aligned_cols=189 Identities=17% Similarity=0.199 Sum_probs=85.5
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHh---cCCCccEEeccCCCc--cCHHHH------HHHHhcCCCCcEEEccCcccCh
Q 012414 145 FASGLKEVKLDKCLNVTDVGLAKIAV---RCVNLERLSLKWCME--ISDLGI------DLLCKKCLDLKSLDVSYLKLTN 213 (464)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~--~~~~~~------~~l~~~~~~L~~L~l~~~~~~~ 213 (464)
.+..++.+++++ +.++......+.. ..++|+..+++.... ..+..+ ......+|+|+.|++++|-+.+
T Consensus 28 ~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 355566666665 3444444333332 234555555543211 111111 1112256677777777775555
Q ss_pred hHHHH----hhcccCCceeEecCCCCCChhHHHHHH------------hcCCCCceeeccccccc--ChhHHHHHHhcCC
Q 012414 214 DSFCS----IATLAKLESLVMVGCPCVDDTGLRFLE------------SGCPLLKTIFVSRCKFV--SSTGLISVIRGHS 275 (464)
Q Consensus 214 ~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~------------~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~ 275 (464)
.++.. +.++..|++|.+.+|. ++..+-..+. ..-++|+.+...++..- +...+...++..+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 44433 3456777777777764 3332222211 12355555555443211 1122333444455
Q ss_pred CCcEEeccCCCcccc---HHHHHHHhcCCCCcEEEcCCCCCChHHHHHHH---HhCCCCcEEecCCC
Q 012414 276 GLLQLDAGHCFSELS---TTLLHHMRDLKNLEAITMDGARISDSCFQTIS---FNCKSLVEIGLSKC 336 (464)
Q Consensus 276 ~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~ 336 (464)
.|+.+.+..+.. .. ......+..+++|+.|++.+|.++..+-..+. ..+++|+.|++++|
T Consensus 186 ~leevr~~qN~I-~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 186 TLEEVRLSQNGI-RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccceEEEecccc-cCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 555555554432 11 12233344455555555555544443333322 22334455555554
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=1.5e-13 Score=129.77 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=59.7
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCC--CCCChHHHHHHHhcCCCCcEEeccCCCCCcHHH----------
Q 012414 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC--HSITDDAISAIADSCRGLVCLKIESCNMITEKG---------- 395 (464)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---------- 395 (464)
|+.|.+.+ +.++|..+..+ ..+++|+.|+++++ ..+.+..+. .++.|++|+++|+. ++...
T Consensus 361 Lq~Lylan-N~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGNk-L~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 361 LQELYLAN-NHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGNK-LTTLPDTVANLGRLH 433 (1081)
T ss_pred HHHHHHhc-Ccccccchhhh-ccccceeeeeecccccccCCHHHHh----chHHhHHHhcccch-hhhhhHHHHhhhhhH
Confidence 34444444 34455444444 36667777777763 122222222 45566666666643 22111
Q ss_pred -----------HHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccC
Q 012414 396 -----------LYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCEN 441 (464)
Q Consensus 396 -----------~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~ 441 (464)
+..++ ..+.|+.++++. ++++...+.+....|+|++|++++|.+
T Consensus 434 tL~ahsN~l~~fPe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFPELA-QLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhcCCceeechhhh-hcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 11111 456788888866 788877777666668888888888864
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.2e-13 Score=114.51 Aligned_cols=213 Identities=18% Similarity=0.165 Sum_probs=141.3
Q ss_pred hcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhc
Q 012414 220 ATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD 299 (464)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (464)
+++.+|+...+.++. +.+.+.......||+++.|+++++-......+..+...+|+|+.|.++.+.. ........-..
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl-~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL-SNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc-cCCccccchhh
Confidence 358899999999864 6665554555669999999999865556677888888899999999887653 11111111225
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCC
Q 012414 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (464)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 379 (464)
+++|+.|.+++|.++...+..+...+|+|+.|++.++..+....... .-+..|++|+|++.+.++...+.... .+|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~-~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVG-TLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccc-cccc
Confidence 67888888888888888888888888899888888754221111110 12357888888886555444343333 6788
Q ss_pred CcEEeccCCCCCcHHH-----HHHHHhcCCCccEEecCCCCCCChH-HHHHhhcCCCccEEecCCc
Q 012414 380 LVCLKIESCNMITEKG-----LYQLGSFCLRLEEIDLTDCNGVNDK-GLEYLSRCSELLFLKLGLC 439 (464)
Q Consensus 380 L~~L~l~~~~~~~~~~-----~~~l~~~~~~L~~L~l~~c~~i~~~-~~~~l~~~~~L~~L~l~~~ 439 (464)
|+.|+++.|. +++.. .......+++|+.|++.. +.+.+. .+..+..+++|+.|.+..+
T Consensus 273 L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 273 LNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hhhhhccccC-cchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence 8888887764 33222 222234568888888888 666432 2344445777888877666
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.5e-12 Score=110.66 Aligned_cols=215 Identities=15% Similarity=0.099 Sum_probs=127.9
Q ss_pred cCCCCcEEEccCcccChhHHHH-hhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCC
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCS-IATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHS 275 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 275 (464)
...+|+.+.+.++.+...+... ...+++++.|++++.-......+..++..+|+|+.|+++.+......+- .....++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhhhh
Confidence 4567777888877665544433 4458888888888743333455666777788888888876532211100 0011356
Q ss_pred CCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCC-CChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012414 276 GLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR-ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNL 354 (464)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 354 (464)
+|+.|.++.|.. ........+..+|+|+.|.+..|. +.-..... ..+..|+.|+++++..++....... ..+|.|
T Consensus 198 ~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~-~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV-GTLPGL 273 (505)
T ss_pred hhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-ccccch
Confidence 788888888885 455556666688888888888873 21111111 1345688888888665554433333 367888
Q ss_pred cEEeccCCCCCChHHHH-----HHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCCh
Q 012414 355 KTIDLTCCHSITDDAIS-----AIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (464)
Q Consensus 355 ~~L~l~~~~~l~~~~~~-----~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (464)
+.|+++.| ++.+.... .....+|+|+.|++..++-..-..+..+. ..++|+.|.+.. +.++.
T Consensus 274 ~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~-n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITL-NYLNK 340 (505)
T ss_pred hhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhccc-ccccc
Confidence 88888775 33332211 12335788888888876521222333332 457777777655 45543
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.09 E-value=1.4e-11 Score=116.85 Aligned_cols=253 Identities=18% Similarity=0.188 Sum_probs=137.4
Q ss_pred CCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCc
Q 012414 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLK 252 (464)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 252 (464)
.+|++++++.. .+... ......|.+|+.++..+|.+. .....+....+|+.|.+..+. + ..+.........|+
T Consensus 241 ~nl~~~dis~n-~l~~l--p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ne-l--~yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNL--PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNE-L--EYIPPFLEGLKSLR 313 (1081)
T ss_pred ccceeeecchh-hhhcc--hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhh-h--hhCCCcccccceee
Confidence 46777777764 23322 234446788888888887663 333444445555555544321 1 01111112245666
Q ss_pred eeecccccc--cChhHH-------HHHH--------------hcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcC
Q 012414 253 TIFVSRCKF--VSSTGL-------ISVI--------------RGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMD 309 (464)
Q Consensus 253 ~L~l~~~~~--~~~~~~-------~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 309 (464)
+|++..+.- ..+..+ ..+- ...+.|+.|.+.++. +++..+..+..+++|+-|+++
T Consensus 314 tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 314 TLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH--LTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc--ccccchhhhccccceeeeeec
Confidence 666654321 111000 0000 001224444444444 566666777777777777777
Q ss_pred CCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 012414 310 GARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (464)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 389 (464)
+|.+....-..+. +++.|++|+++++ .++... ..+ ..++.|++|...+ +.+.. +..++ .+++|+.+|++.+
T Consensus 392 yNrL~~fpas~~~-kle~LeeL~LSGN-kL~~Lp-~tv-a~~~~L~tL~ahs-N~l~~--fPe~~-~l~qL~~lDlS~N- 462 (1081)
T KOG0618|consen 392 YNRLNSFPASKLR-KLEELEELNLSGN-KLTTLP-DTV-ANLGRLHTLRAHS-NQLLS--FPELA-QLPQLKVLDLSCN- 462 (1081)
T ss_pred ccccccCCHHHHh-chHHhHHHhcccc-hhhhhh-HHH-HhhhhhHHHhhcC-Cceee--chhhh-hcCcceEEecccc-
Confidence 7754433322222 5567777777773 344322 222 2566677776654 23322 22333 5789999999864
Q ss_pred CCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHH
Q 012414 390 MITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKG 446 (464)
Q Consensus 390 ~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~ 446 (464)
+++...+.... ..|+|++|+++| +.-....-+.+..+..+...++.-+ +..+..
T Consensus 463 ~L~~~~l~~~~-p~p~LkyLdlSG-N~~l~~d~~~l~~l~~l~~~~i~~~-~~~d~~ 516 (1081)
T KOG0618|consen 463 NLSEVTLPEAL-PSPNLKYLDLSG-NTRLVFDHKTLKVLKSLSQMDITLN-NTPDGN 516 (1081)
T ss_pred hhhhhhhhhhC-CCcccceeeccC-CcccccchhhhHHhhhhhheecccC-CCCccc
Confidence 47766665544 348999999999 4434445566667777777777766 444433
No 23
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=3.5e-10 Score=93.56 Aligned_cols=209 Identities=13% Similarity=0.120 Sum_probs=140.3
Q ss_pred CCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHH-hcCCC
Q 012414 224 KLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM-RDLKN 302 (464)
Q Consensus 224 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~ 302 (464)
-++-|.+.+|..-+...+..+...+..++.+++.++.--.+..+..++.++|.|+.|+++.+.. ... +..+ ....+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L--~s~-I~~lp~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL--SSD-IKSLPLPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC--CCc-cccCcccccc
Confidence 4455666665433334555566667888888888866556677788888888888888887752 222 2222 35568
Q ss_pred CcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCC----CCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCC
Q 012414 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCL----GVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCR 378 (464)
Q Consensus 303 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 378 (464)
|+.|.+.++.++-.....+....|.+++|+++.+. ++.+..... ..+.+++|+..+|..........+...+|
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 88888888877777777777788888888887642 122222222 22567788888775544555566666788
Q ss_pred CCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCCh-HHHHHhhcCCCccEEecCCcc
Q 012414 379 GLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND-KGLEYLSRCSELLFLKLGLCE 440 (464)
Q Consensus 379 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~L~~L~l~~~~ 440 (464)
++..+-+..|| +....-..-.+.+|.+-.|+++. +++.+ +.+.++.+++.|..|.+..+|
T Consensus 200 nv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 200 NVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCc
Confidence 88888888887 55444444445667777888877 56643 456777788888888888885
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=4e-11 Score=102.90 Aligned_cols=101 Identities=16% Similarity=0.051 Sum_probs=70.5
Q ss_pred HhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhc
Q 012414 348 VSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR 427 (464)
Q Consensus 348 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 427 (464)
++.+++|++|++++ +.++...-..+. ....+++|.+..+. +.... ..+++.+..|+.|++++ ++|+..+..+|..
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~aFe-~~a~l~eL~L~~N~-l~~v~-~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGAFE-GAAELQELYLTRNK-LEFVS-SGMFQGLSGLKTLSLYD-NQITTVAPGAFQT 344 (498)
T ss_pred HhhcccceEeccCC-Cccchhhhhhhc-chhhhhhhhcCcch-HHHHH-HHhhhccccceeeeecC-CeeEEEecccccc
Confidence 46788999999987 466654433333 56788888887744 33222 23445778899999999 7998888777778
Q ss_pred CCCccEEecCCccCCChHHHHHHHhc
Q 012414 428 CSELLFLKLGLCENISDKGLFYIASN 453 (464)
Q Consensus 428 ~~~L~~L~l~~~~~i~~~~~~~~~~~ 453 (464)
..+|.+|.+-.||.--+..+..+.+.
T Consensus 345 ~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred cceeeeeehccCcccCccchHHHHHH
Confidence 88899999888876655555555443
No 25
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.96 E-value=2.4e-10 Score=69.39 Aligned_cols=38 Identities=18% Similarity=0.438 Sum_probs=33.2
Q ss_pred cCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhccc
Q 012414 7 LDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (464)
Q Consensus 7 ~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~ 45 (464)
|..||+||+.+||+||+ ..|+.+++.|||+|++++...
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 67899999999999998 999999999999999987543
No 26
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.90 E-value=9.6e-09 Score=99.58 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=103.5
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCC
Q 012414 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKL 225 (464)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 225 (464)
-.+|++|++++-..+.......++.-+|+|++|.+.+. .+....+..++..+|+|..||++++++++ +..++++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISN--LSGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccC--cHHHhccccH
Confidence 46788888888666666777788888899999998886 44455577778888999999999887765 3678889999
Q ss_pred ceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhH-HHHHH---hcCCCCcEEeccCCCccccHHHHHHH-hcC
Q 012414 226 ESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTG-LISVI---RGHSGLLQLDAGHCFSELSTTLLHHM-RDL 300 (464)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~ 300 (464)
+.|.+.+........+..+.. +++|+.|+++.-....... +..++ ..+|+|+.|+.++.+ +.....+.+ ...
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd--i~~~~le~ll~sH 274 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD--INEEILEELLNSH 274 (699)
T ss_pred HHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc--hhHHHHHHHHHhC
Confidence 999888755444455656655 7888888888754433321 11111 235666666666555 344333333 234
Q ss_pred CCCcEEE
Q 012414 301 KNLEAIT 307 (464)
Q Consensus 301 ~~L~~L~ 307 (464)
|+|+.+.
T Consensus 275 ~~L~~i~ 281 (699)
T KOG3665|consen 275 PNLQQIA 281 (699)
T ss_pred ccHhhhh
Confidence 4555443
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=2.5e-09 Score=104.07 Aligned_cols=263 Identities=17% Similarity=0.086 Sum_probs=136.5
Q ss_pred CCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCC
Q 012414 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (464)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 201 (464)
.+-..|+++.+. ++.. +..+ .++|+.|++.+ +.++. +....++|++|+++++ .++.. . ...++|
T Consensus 201 ~~~~~LdLs~~~-LtsL-P~~l--~~~L~~L~L~~-N~Lt~-----LP~lp~~Lk~LdLs~N-~LtsL--P---~lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGESG-LTTL-PDCL--PAHITTLVIPD-NNLTS-----LPALPPELRTLEVSGN-QLTSL--P---VLPPGL 264 (788)
T ss_pred CCCcEEEcCCCC-CCcC-Ccch--hcCCCEEEccC-CcCCC-----CCCCCCCCcEEEecCC-ccCcc--c---Cccccc
Confidence 445666666643 3321 1111 13677777776 34443 1122567777777765 44421 1 123577
Q ss_pred cEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEe
Q 012414 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLD 281 (464)
Q Consensus 202 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (464)
+.|++++|.+..- .. -.++|+.|.+.++. +.. +....++|+.|+++++. +.. +.. ...+|+.|.
T Consensus 265 ~~L~Ls~N~L~~L--p~--lp~~L~~L~Ls~N~-Lt~-----LP~~p~~L~~LdLS~N~-L~~--Lp~---lp~~L~~L~ 328 (788)
T PRK15387 265 LELSIFSNPLTHL--PA--LPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSDNQ-LAS--LPA---LPSELCKLW 328 (788)
T ss_pred ceeeccCCchhhh--hh--chhhcCEEECcCCc-ccc-----ccccccccceeECCCCc-ccc--CCC---Ccccccccc
Confidence 7777777754421 11 13456677776642 321 11224677777777643 221 111 123566666
Q ss_pred ccCCCccccHHHHHHHhcC-CCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEecc
Q 012414 282 AGHCFSELSTTLLHHMRDL-KNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLT 360 (464)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (464)
+.++.. .. +..+ .+|+.|++++|.+.... . ..++|+.|+++++ .+.. +.. ...+|+.|+++
T Consensus 329 Ls~N~L--~~-----LP~lp~~Lq~LdLS~N~Ls~LP--~---lp~~L~~L~Ls~N-~L~~--LP~---l~~~L~~LdLs 390 (788)
T PRK15387 329 AYNNQL--TS-----LPTLPSGLQELSVSDNQLASLP--T---LPSELYKLWAYNN-RLTS--LPA---LPSGLKELIVS 390 (788)
T ss_pred cccCcc--cc-----ccccccccceEecCCCccCCCC--C---CCcccceehhhcc-cccc--Ccc---cccccceEEec
Confidence 666542 11 1122 36778888777655311 1 2346777777653 3332 111 22467788887
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCcc
Q 012414 361 CCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCE 440 (464)
Q Consensus 361 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~ 440 (464)
++ .++. +....++|+.|+++++. ++. +.. ...+|+.|++++ +.++.. ...+..+++|+.|++++|
T Consensus 391 ~N-~Lt~-----LP~l~s~L~~LdLS~N~-Lss--IP~---l~~~L~~L~Ls~-NqLt~L-P~sl~~L~~L~~LdLs~N- 455 (788)
T PRK15387 391 GN-RLTS-----LPVLPSELKELMVSGNR-LTS--LPM---LPSGLLSLSVYR-NQLTRL-PESLIHLSSETTVNLEGN- 455 (788)
T ss_pred CC-cccC-----CCCcccCCCEEEccCCc-CCC--CCc---chhhhhhhhhcc-Cccccc-ChHHhhccCCCeEECCCC-
Confidence 64 4432 11123577888887765 332 111 124577777777 566632 234556778888888887
Q ss_pred CCChHHHHH
Q 012414 441 NISDKGLFY 449 (464)
Q Consensus 441 ~i~~~~~~~ 449 (464)
.++......
T Consensus 456 ~Ls~~~~~~ 464 (788)
T PRK15387 456 PLSERTLQA 464 (788)
T ss_pred CCCchHHHH
Confidence 565544443
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.84 E-value=2.3e-08 Score=96.99 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=68.9
Q ss_pred cCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCC
Q 012414 223 AKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN 302 (464)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 302 (464)
.+|++|+++|...+.......+...+|+|++|.+.+.. .....+..+..++|+|..|+++++. +... ..++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~Tn--I~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTN--ISNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCC--ccCc--HHHhcccc
Confidence 45555555554334334444444445555555555532 2222244444455555555555543 1111 44445555
Q ss_pred CcEEEcCCCCCCh-HHHHHHHHhCCCCcEEecCCCCCCCHHHH-HHH---HhcCCCCcEEeccCCCCCChHHHHHHHhcC
Q 012414 303 LEAITMDGARISD-SCFQTISFNCKSLVEIGLSKCLGVTNTGI-TQL---VSGCVNLKTIDLTCCHSITDDAISAIADSC 377 (464)
Q Consensus 303 L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 377 (464)
|+.|.+.+-.+.. ..+..+. .+.+|+.|+++......+..+ ... ...+|+|+.|+.++ ..++++.+..+...-
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSH 274 (699)
T ss_pred HHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhC
Confidence 5555555444332 3333333 445555555554322222211 111 11234555555554 344444444444444
Q ss_pred CCCcEEec
Q 012414 378 RGLVCLKI 385 (464)
Q Consensus 378 ~~L~~L~l 385 (464)
|+|+.+..
T Consensus 275 ~~L~~i~~ 282 (699)
T KOG3665|consen 275 PNLQQIAA 282 (699)
T ss_pred ccHhhhhh
Confidence 44444443
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.80 E-value=8.3e-08 Score=78.78 Aligned_cols=191 Identities=18% Similarity=0.190 Sum_probs=117.5
Q ss_pred cCCCCceeecccccc--cChhHHHHHHhcCCCCcEEeccCCCccccHHH----H---------HHHhcCCCCcEEEcCCC
Q 012414 247 GCPLLKTIFVSRCKF--VSSTGLISVIRGHSGLLQLDAGHCFSELSTTL----L---------HHMRDLKNLEAITMDGA 311 (464)
Q Consensus 247 ~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~---------~~~~~~~~L~~L~l~~~ 311 (464)
.||+|+.++++.+.. -....+..++++.+.|++|.+++|. +.... . .....-|.|+.+....|
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG--lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG--LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC--CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 378888888877532 2234556677778888888888775 22211 1 11224568888888887
Q ss_pred CCCh---HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHH----hcCCCCcEEeccCCCCCChHHHHHHH---hcCCCCc
Q 012414 312 RISD---SCFQTISFNCKSLVEIGLSKCLGVTNTGITQLV----SGCVNLKTIDLTCCHSITDDAISAIA---DSCRGLV 381 (464)
Q Consensus 312 ~~~~---~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~ 381 (464)
++.. .........-.+|+.+.+.+ +.+...++..++ ..+.+|+.|++.. +.++..+-..++ ..++.|+
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhh
Confidence 6432 23333333335788888887 457666554432 3578899999987 455655544443 3467889
Q ss_pred EEeccCCCCCcHHHHHHHHhc-----CCCccEEecCCCCCCChHHH-----HHhh--cCCCccEEecCCccCCCh
Q 012414 382 CLKIESCNMITEKGLYQLGSF-----CLRLEEIDLTDCNGVNDKGL-----EYLS--RCSELLFLKLGLCENISD 444 (464)
Q Consensus 382 ~L~l~~~~~~~~~~~~~l~~~-----~~~L~~L~l~~c~~i~~~~~-----~~l~--~~~~L~~L~l~~~~~i~~ 444 (464)
+|.+.+|- ++..|...+... .|+|..|-..+ +.+....+ ..+- ..|-|..+.+.+| .+..
T Consensus 246 EL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Y-ne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E 317 (388)
T COG5238 246 ELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDY-NERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKE 317 (388)
T ss_pred hccccchh-hccccHHHHHHHhhhhcCCCccccccch-hhhcCceeeeechhhhhhcccHHHHHHHHccC-cchh
Confidence 99998886 666666655543 47777777766 44433322 2222 3677777887777 5543
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.74 E-value=1.1e-09 Score=94.33 Aligned_cols=272 Identities=16% Similarity=0.098 Sum_probs=148.1
Q ss_pred CccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCce
Q 012414 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (464)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (464)
.-..|.+..+ .++..... .++.+++|+.|++++|.|+......+..+++|.+|.+.+.+.+.+..-..+.. +.+|+.
T Consensus 68 ~tveirLdqN-~I~~iP~~-aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-L~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPG-AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-LSSLQR 144 (498)
T ss_pred cceEEEeccC-CcccCChh-hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-HHHHHH
Confidence 4455666554 44433222 23467888888888888877777777778888888877755666544443433 556666
Q ss_pred eecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCC-CChHHHHHHHHhCCCCcEEe
Q 012414 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR-ISDSCFQTISFNCKSLVEIG 332 (464)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~ 332 (464)
|.+.-+. + .-..+..+..++++..|.+..+. +....-..+..+..++.+.+..++ +.+..++.+..... .....
T Consensus 145 LllNan~-i-~Cir~~al~dL~~l~lLslyDn~--~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a-~~~ie 219 (498)
T KOG4237|consen 145 LLLNANH-I-NCIRQDALRDLPSLSLLSLYDNK--IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA-MNPIE 219 (498)
T ss_pred HhcChhh-h-cchhHHHHHHhhhcchhcccchh--hhhhccccccchhccchHhhhcCccccccccchhhhHHh-hchhh
Confidence 6654321 1 11223344456677777655443 122222234456677777776665 33332222221100 00001
Q ss_pred cCCCCCCCH----------HHHHHHHhcCCCCcEE--ec-cCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHH
Q 012414 333 LSKCLGVTN----------TGITQLVSGCVNLKTI--DL-TCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQL 399 (464)
Q Consensus 333 l~~~~~~~~----------~~~~~~~~~~~~L~~L--~l-~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 399 (464)
.++...... ..-..+.. .++.+ .+ +.| .........-...+|+|+.|+++++. ++...-..+
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c---~~esl~s~~~~~d-~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~aF 294 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLC---SLESLPSRLSSED-FPDSICPAKCFKKLPNLRKLNLSNNK-ITRIEDGAF 294 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhh---hHHhHHHhhcccc-CcCCcChHHHHhhcccceEeccCCCc-cchhhhhhh
Confidence 111000000 00011110 12222 11 122 22222333335578999999999854 665443333
Q ss_pred HhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeee
Q 012414 400 GSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDL 462 (464)
Q Consensus 400 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l 462 (464)
+....+++|.+.. +++....-..|.++..|+.|++++| +|+..+-.++ +....|.+|.+
T Consensus 295 -e~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF-~~~~~l~~l~l 353 (498)
T KOG4237|consen 295 -EGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAF-QTLFSLSTLNL 353 (498)
T ss_pred -cchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCC-eeEEEecccc-cccceeeeeeh
Confidence 3567899999998 7887777677778999999999999 7776554444 44456666654
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.72 E-value=1e-08 Score=99.91 Aligned_cols=253 Identities=16% Similarity=0.095 Sum_probs=151.3
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCc
Q 012414 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (464)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 226 (464)
.+-..|+++.+ +++.. ...+ .++|+.|.+.++ .++. +....++|++|++++|.++... . ..++|+
T Consensus 201 ~~~~~LdLs~~-~LtsL-P~~l---~~~L~~L~L~~N-~Lt~-----LP~lp~~Lk~LdLs~N~LtsLP--~--lp~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGES-GLTTL-PDCL---PAHITTLVIPDN-NLTS-----LPALPPELRTLEVSGNQLTSLP--V--LPPGLL 265 (788)
T ss_pred CCCcEEEcCCC-CCCcC-Ccch---hcCCCEEEccCC-cCCC-----CCCCCCCCcEEEecCCccCccc--C--cccccc
Confidence 45667777763 44421 1111 246788888765 4442 2223578888888888665321 1 246788
Q ss_pred eeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHh-cCCCCcE
Q 012414 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR-DLKNLEA 305 (464)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~ 305 (464)
.|++.++. +. .+....++|+.|+++++. +.. +. ...++|+.|+++++.. .. +. ...+|+.
T Consensus 266 ~L~Ls~N~-L~-----~Lp~lp~~L~~L~Ls~N~-Lt~--LP---~~p~~L~~LdLS~N~L--~~-----Lp~lp~~L~~ 326 (788)
T PRK15387 266 ELSIFSNP-LT-----HLPALPSGLCKLWIFGNQ-LTS--LP---VLPPGLQELSVSDNQL--AS-----LPALPSELCK 326 (788)
T ss_pred eeeccCCc-hh-----hhhhchhhcCEEECcCCc-ccc--cc---ccccccceeECCCCcc--cc-----CCCCcccccc
Confidence 88887643 32 222224678888887753 322 11 1246788998888753 21 11 1236778
Q ss_pred EEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEec
Q 012414 306 ITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKI 385 (464)
Q Consensus 306 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 385 (464)
|.+++|.++.. .. ..++|+.|+++++ .++. +. ...++|+.|+++++ .++. +....++|+.|++
T Consensus 327 L~Ls~N~L~~L--P~---lp~~Lq~LdLS~N-~Ls~--LP---~lp~~L~~L~Ls~N-~L~~-----LP~l~~~L~~LdL 389 (788)
T PRK15387 327 LWAYNNQLTSL--PT---LPSGLQELSVSDN-QLAS--LP---TLPSELYKLWAYNN-RLTS-----LPALPSGLKELIV 389 (788)
T ss_pred cccccCccccc--cc---cccccceEecCCC-ccCC--CC---CCCcccceehhhcc-cccc-----CcccccccceEEe
Confidence 88888766531 11 2247899999874 4443 11 12357888888863 4442 2223458999999
Q ss_pred cCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 386 ESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+++. ++.. ....++|+.|++++ +.++.. .. ...+|+.|++++| +++. +..-+..+++|+.|++++
T Consensus 390 s~N~-Lt~L-----P~l~s~L~~LdLS~-N~LssI--P~--l~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 390 SGNR-LTSL-----PVLPSELKELMVSG-NRLTSL--PM--LPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEG 454 (788)
T ss_pred cCCc-ccCC-----CCcccCCCEEEccC-CcCCCC--Cc--chhhhhhhhhccC-cccc--cChHHhhccCCCeEECCC
Confidence 8865 4421 11236899999999 577632 11 2357889999998 6764 322245788999998864
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.67 E-value=3.3e-10 Score=97.64 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=10.7
Q ss_pred HHHHHhhCCCceEEeccc
Q 012414 57 LFILLDKYPYIKTLDLSV 74 (464)
Q Consensus 57 ~~~~~~~~~~l~~l~l~~ 74 (464)
+..-.++.+.+..++++.
T Consensus 60 l~~dl~nL~~l~vl~~~~ 77 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHD 77 (565)
T ss_pred ccHhhhcccceeEEEecc
Confidence 333445566677777665
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=1.8e-08 Score=79.81 Aligned_cols=125 Identities=23% Similarity=0.273 Sum_probs=38.1
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCc
Q 012414 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406 (464)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 406 (464)
++++|++.++ .++. +..+...+.+|+.|+++++ .++. +..+. .++.|++|+++++. ++..+ ..+...+|+|
T Consensus 20 ~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~N~-I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 20 KLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSNNR-ISSIS-EGLDKNLPNL 90 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-C-HHHHHH-TT-
T ss_pred cccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCCCC-CCccc-cchHHhCCcC
Confidence 4555555553 2332 2222223456666666653 3332 12222 45667777776644 44321 1122346777
Q ss_pred cEEecCCCCCCCh-HHHHHhhcCCCccEEecCCccCCChHH-HHHHHhcCcccceee
Q 012414 407 EEIDLTDCNGVND-KGLEYLSRCSELLFLKLGLCENISDKG-LFYIASNCLRIQGLD 461 (464)
Q Consensus 407 ~~L~l~~c~~i~~-~~~~~l~~~~~L~~L~l~~~~~i~~~~-~~~~~~~~~~L~~l~ 461 (464)
+.|++++ +++.+ ..+..+..+|+|+.|++.+||--.... -..++..+|+|+.||
T Consensus 91 ~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 91 QELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 7777776 56644 223455567777777777774332222 234456677777765
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.55 E-value=4.8e-06 Score=68.70 Aligned_cols=223 Identities=15% Similarity=0.137 Sum_probs=135.4
Q ss_pred cCCCCcEEEccCcccChhHHHHhhc----ccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHh
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSIAT----LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIR 272 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 272 (464)
....++.+++++|.+....+..+++ -.+|+..+++.. ++......+.. + -..+...+-
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~~---~-------------L~~Ll~aLl 89 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELYS---N-------------LVMLLKALL 89 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHHH---H-------------HHHHHHHHh
Confidence 4667788888888777776666554 234444443321 11000000100 0 011223344
Q ss_pred cCCCCcEEeccCCCcc--ccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHH------------HhCCCCcEEecCCCC-
Q 012414 273 GHSGLLQLDAGHCFSE--LSTTLLHHMRDLKNLEAITMDGARISDSCFQTIS------------FNCKSLVEIGLSKCL- 337 (464)
Q Consensus 273 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~------------~~~~~L~~L~l~~~~- 337 (464)
.||+|+..+++.+... ........+++-+.|.+|.+++|.+.+.+-..+. ..-|.|+.+....+.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 6999999999977531 3345666777888999999999965443322222 124778888776532
Q ss_pred -CCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHH----hcCCCCcEEeccCCCCCcHHHHHHHHh---cCCCccEE
Q 012414 338 -GVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIA----DSCRGLVCLKIESCNMITEKGLYQLGS---FCLRLEEI 409 (464)
Q Consensus 338 -~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L 409 (464)
+.+...+...+..-.+|+.+.+.+ +.|..+++..+. ..+.+|+.|++.++. .+..+-..++. .++.|+.|
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhc
Confidence 112223333333336899999987 577777665543 247899999998854 66666555553 34678999
Q ss_pred ecCCCCCCChHHHHHhh------cCCCccEEecCCcc
Q 012414 410 DLTDCNGVNDKGLEYLS------RCSELLFLKLGLCE 440 (464)
Q Consensus 410 ~l~~c~~i~~~~~~~l~------~~~~L~~L~l~~~~ 440 (464)
.+..| -++..+...+. ..|+|..|...+|.
T Consensus 248 ~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 248 RLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred cccch-hhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 99998 66655554433 26889999888883
No 35
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.54 E-value=1.6e-08 Score=61.81 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=32.9
Q ss_pred ccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhccc
Q 012414 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (464)
Q Consensus 6 ~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~ 45 (464)
+|.+||+|++.+||++|+ ..|+.+++.|||+|++++...
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcCC
Confidence 578899999999999999 999999999999999987554
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.3e-07 Score=78.64 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=47.0
Q ss_pred HHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHH
Q 012414 164 GLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRF 243 (464)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 243 (464)
.+..+...+..++.+++.++.--....+..+...+|.|+.|+++.|.+....-..-....+|+.|.+.| ..++......
T Consensus 62 d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s 140 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTS 140 (418)
T ss_pred hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhh
Confidence 344455555566666665552223344555555666666666666644432111112345566666655 3344444444
Q ss_pred HHhcCCCCceeeccc
Q 012414 244 LESGCPLLKTIFVSR 258 (464)
Q Consensus 244 l~~~~~~L~~L~l~~ 258 (464)
+....|.+++|.++.
T Consensus 141 ~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSD 155 (418)
T ss_pred hhhcchhhhhhhhcc
Confidence 444455555555544
No 37
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.41 E-value=1.8e-07 Score=55.01 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhccc
Q 012414 10 LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (464)
Q Consensus 10 LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~ 45 (464)
||+|++..||.+++ ..|+.+++.|||+|+.+....
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999999 999999999999999987554
No 38
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=5e-07 Score=71.04 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=57.6
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCcc
Q 012414 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLE 407 (464)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 407 (464)
++.++-+++ .+..+++..+- .++.++.|.+.+|..+.|..+..+..-.|+|+.|++++|+.||+.|+..+. .+++|+
T Consensus 103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 455665553 46666666653 667777777777777777777777766677777777777777777776665 667777
Q ss_pred EEecCCC
Q 012414 408 EIDLTDC 414 (464)
Q Consensus 408 ~L~l~~c 414 (464)
.|.+++-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 7777663
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=8e-07 Score=69.92 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=83.8
Q ss_pred CCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCc
Q 012414 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381 (464)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 381 (464)
.++.++-+++.+..+++..+. .++.++.|.+.+|..+.|.++..+....++|+.|+|++|+.|++.++..+. .+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 456677777778888888876 889999999999999999999999877899999999999999999999887 789999
Q ss_pred EEeccCCCCCcHHHHH--HHHhcCCCccE
Q 012414 382 CLKIESCNMITEKGLY--QLGSFCLRLEE 408 (464)
Q Consensus 382 ~L~l~~~~~~~~~~~~--~l~~~~~~L~~ 408 (464)
.|.+.+-+.+.+.+.. .+-..+|+++.
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCcccce
Confidence 9999887766544332 22234565544
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=2.4e-07 Score=77.35 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=79.3
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCC
Q 012414 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (464)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 379 (464)
...|+++++++|.++... .-..-.|.++.|+++.+ .+...+ .+ ..+++|..|+++++ .++. +......+.+
T Consensus 283 Wq~LtelDLS~N~I~~iD--ESvKL~Pkir~L~lS~N-~i~~v~--nL-a~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQID--ESVKLAPKLRRLILSQN-RIRTVQ--NL-AELPQLQLLDLSGN-LLAE--CVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccccccchhhhh--hhhhhccceeEEecccc-ceeeeh--hh-hhcccceEeecccc-hhHh--hhhhHhhhcC
Confidence 446777777777654321 11224578888888874 444322 22 35678888888874 3222 2222335678
Q ss_pred CcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCCh-HHHHHhhcCCCccEEecCCcc
Q 012414 380 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND-KGLEYLSRCSELLFLKLGLCE 440 (464)
Q Consensus 380 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~L~~L~l~~~~ 440 (464)
++.|.++++.--+-.|+.. +-+|..|++.+ ++|.. +.++.++++|.|+.+.+.+||
T Consensus 354 IKtL~La~N~iE~LSGL~K----LYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLSGLRK----LYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred EeeeehhhhhHhhhhhhHh----hhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 8888887754222233433 34788888888 67643 456667788999999998886
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.24 E-value=7.1e-07 Score=70.81 Aligned_cols=105 Identities=23% Similarity=0.272 Sum_probs=26.6
Q ss_pred CCCCcEEecCCCCCCChHHHHHhh-cCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCC
Q 012414 121 CPLLESVDLSYCCGFGDREAAALS-FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL 199 (464)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 199 (464)
+..+++|++.++. ++. +..+. .+.+|+.|++++ +.++. +..+. .+++|+.|+++++ .++..+ ..+...+|
T Consensus 18 ~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~-N~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSN-NQITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGLDKNLP 88 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TT-S--S----TT-----TT--EEE--SS----S-C-HHHHHH-T
T ss_pred ccccccccccccc-ccc--ccchhhhhcCCCEEECCC-CCCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cchHHhCC
Confidence 4456777777643 222 12333 356677777776 33333 11111 2566666666655 333221 11223456
Q ss_pred CCcEEEccCcccCh-hHHHHhhcccCCceeEecCCC
Q 012414 200 DLKSLDVSYLKLTN-DSFCSIATLAKLESLVMVGCP 234 (464)
Q Consensus 200 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 234 (464)
+|+.|++++|.+.+ ..+..+..+++|+.|++.+.+
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 66666666665433 223444556666666665543
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=3e-07 Score=76.74 Aligned_cols=124 Identities=21% Similarity=0.183 Sum_probs=82.6
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCC
Q 012414 325 CKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCL 404 (464)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 404 (464)
...|++++++++ .++. +..-.+-.|.++.|+++++ .+... ..+. .+++|+.|+++++..-.-.| +-..+-
T Consensus 283 Wq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~N-~i~~v--~nLa-~L~~L~~LDLS~N~Ls~~~G---wh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQN-RIRTV--QNLA-ELPQLQLLDLSGNLLAECVG---WHLKLG 352 (490)
T ss_pred Hhhhhhcccccc-chhh--hhhhhhhccceeEEecccc-ceeee--hhhh-hcccceEeecccchhHhhhh---hHhhhc
Confidence 457889999884 3443 3333445689999999984 44432 2233 68899999999865222233 333567
Q ss_pred CccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCCh-HHHHHHHhcCcccceeeec
Q 012414 405 RLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD-KGLFYIASNCLRIQGLDLY 463 (464)
Q Consensus 405 ~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~-~~~~~~~~~~~~L~~l~l~ 463 (464)
+++.|.+++ +.+. .+..+..+-+|..|++++| +|.. ..++.+ ..+|.|+.+.+.
T Consensus 353 NIKtL~La~-N~iE--~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~I-G~LPCLE~l~L~ 407 (490)
T KOG1259|consen 353 NIKTLKLAQ-NKIE--TLSGLRKLYSLVNLDLSSN-QIEELDEVNHI-GNLPCLETLRLT 407 (490)
T ss_pred CEeeeehhh-hhHh--hhhhhHhhhhheecccccc-chhhHHHhccc-ccccHHHHHhhc
Confidence 999999998 5663 3455566779999999999 6654 334443 567777766553
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.21 E-value=4.9e-07 Score=90.36 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=47.2
Q ss_pred hCCCCcEEecCCCCC-CChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcC
Q 012414 120 ACPLLESVDLSYCCG-FGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKC 198 (464)
Q Consensus 120 ~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 198 (464)
.++.|++|-+.++.. +.......+..+|.|+.||++++..... +......+-+|++|+++++ .+. .++.-...+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~t-~I~--~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSDT-GIS--HLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccCC-Ccc--ccchHHHHH
Confidence 345566665554331 2223333455566666666665332221 2222222555666666554 333 111111234
Q ss_pred CCCcEEEccCcccChhHHHHhhcccCCceeEecC
Q 012414 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 232 (464)
..|.+|++..+..-.........+++|++|.+..
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeec
Confidence 4555555555421111112222355666666554
No 44
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.16 E-value=9.9e-06 Score=79.89 Aligned_cols=12 Identities=8% Similarity=0.440 Sum_probs=5.8
Q ss_pred CCcEEEccCccc
Q 012414 200 DLKSLDVSYLKL 211 (464)
Q Consensus 200 ~L~~L~l~~~~~ 211 (464)
+|+.|++++|.+
T Consensus 242 ~L~~L~Ls~N~L 253 (754)
T PRK15370 242 TIQEMELSINRI 253 (754)
T ss_pred cccEEECcCCcc
Confidence 455555555533
No 45
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.14 E-value=6.8e-06 Score=81.03 Aligned_cols=255 Identities=15% Similarity=0.096 Sum_probs=145.5
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCc
Q 012414 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (464)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 226 (464)
.+...|++++ .+++... ..+ .++|+.|+++++ .++.... . ..++|+.|++++|.++.-. ..+ .++|+
T Consensus 178 ~~~~~L~L~~-~~LtsLP-~~I---p~~L~~L~Ls~N-~LtsLP~-~---l~~nL~~L~Ls~N~LtsLP-~~l--~~~L~ 244 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIP-ACI---PEQITTLILDNN-ELKSLPE-N---LQGNIKTLYANSNQLTSIP-ATL--PDTIQ 244 (754)
T ss_pred cCceEEEeCC-CCcCcCC-ccc---ccCCcEEEecCC-CCCcCCh-h---hccCCCEEECCCCccccCC-hhh--hcccc
Confidence 4577788876 3443211 111 357888888876 4542211 1 2358999999988665321 112 34788
Q ss_pred eeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEE
Q 012414 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAI 306 (464)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 306 (464)
.|+++++. +.... ..+ ..+|+.|+++++. +.. +..- -.++|+.|+++++.. .. ....+ .++|+.|
T Consensus 245 ~L~Ls~N~-L~~LP-~~l---~s~L~~L~Ls~N~-L~~--LP~~--l~~sL~~L~Ls~N~L--t~-LP~~l--p~sL~~L 309 (754)
T PRK15370 245 EMELSINR-ITELP-ERL---PSALQSLDLFHNK-ISC--LPEN--LPEELRYLSVYDNSI--RT-LPAHL--PSGITHL 309 (754)
T ss_pred EEECcCCc-cCcCC-hhH---hCCCCEEECcCCc-cCc--cccc--cCCCCcEEECCCCcc--cc-Ccccc--hhhHHHH
Confidence 88888754 33211 111 2578888888643 332 1111 135788999888753 21 11111 1367888
Q ss_pred EcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEecc
Q 012414 307 TMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIE 386 (464)
Q Consensus 307 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 386 (464)
++++|.+..... ...++|+.|++++|. ++. +... -.++|+.|++++| .++... ..+ .++|+.|+++
T Consensus 310 ~Ls~N~Lt~LP~----~l~~sL~~L~Ls~N~-Lt~--LP~~--l~~sL~~L~Ls~N-~L~~LP-~~l---p~~L~~LdLs 375 (754)
T PRK15370 310 NVQSNSLTALPE----TLPPGLKTLEAGENA-LTS--LPAS--LPPELQVLDVSKN-QITVLP-ETL---PPTITTLDVS 375 (754)
T ss_pred HhcCCccccCCc----cccccceeccccCCc-ccc--CChh--hcCcccEEECCCC-CCCcCC-hhh---cCCcCEEECC
Confidence 888887653211 123688999988753 432 1111 1368999999986 444211 111 3689999999
Q ss_pred CCCCCcHHHHHHHHhcCCCccEEecCCCCCCChH--HHH-HhhcCCCccEEecCCccCCChHHHHHH
Q 012414 387 SCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDK--GLE-YLSRCSELLFLKLGLCENISDKGLFYI 450 (464)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~--~~~-~l~~~~~L~~L~l~~~~~i~~~~~~~~ 450 (464)
+|. ++...- .+. +.|+.|++++ +.++.. .+. ....++.+..+++.+| .++...++.+
T Consensus 376 ~N~-Lt~LP~-~l~---~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~~L 435 (754)
T PRK15370 376 RNA-LTNLPE-NLP---AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQNM 435 (754)
T ss_pred CCc-CCCCCH-hHH---HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCC-CccHHHHHHH
Confidence 875 442111 111 3688888888 466532 122 2334688999999999 6665555543
No 46
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.14 E-value=1.4e-07 Score=81.83 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=55.1
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhc
Q 012414 323 FNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSF 402 (464)
Q Consensus 323 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 402 (464)
..+++|..|+++++ -+.+.. ..+ .....|+.|+++.. .+.. +..+......++.+-.++ .++.......+ ..
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~LP-~e~-~~lv~Lq~LnlS~N-rFr~--lP~~~y~lq~lEtllas~-nqi~~vd~~~l-~n 503 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDLP-EEM-GSLVRLQTLNLSFN-RFRM--LPECLYELQTLETLLASN-NQIGSVDPSGL-KN 503 (565)
T ss_pred Hhhhcceeeecccc-hhhhcc-hhh-hhhhhhheeccccc-cccc--chHHHhhHHHHHHHHhcc-ccccccChHHh-hh
Confidence 35667777777763 222211 111 23445777777753 2211 111111112222222222 22332222222 25
Q ss_pred CCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCcc
Q 012414 403 CLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCE 440 (464)
Q Consensus 403 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~ 440 (464)
+.+|..|++.+ +.+... ...++++++|++|++.+|+
T Consensus 504 m~nL~tLDL~n-Ndlq~I-Pp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQQI-PPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCC-CchhhC-ChhhccccceeEEEecCCc
Confidence 67888999888 666533 2456788999999999984
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.11 E-value=1.3e-06 Score=87.38 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=86.7
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012414 95 TRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVN 174 (464)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 174 (464)
.+.+++|-+..+...-......+...+|.|+.|+++++.... ..+..++.+-+|++|++++ +.+.. +..-...++.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~-t~I~~--LP~~l~~Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSD-TGISH--LPSGLGNLKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccC-CCccc--cchHHHHHHh
Confidence 446777777765321222233445589999999999865433 4456788899999999998 56652 3333334889
Q ss_pred ccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCc--ccChhHHHHhhcccCCceeEecC
Q 012414 175 LERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL--KLTNDSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~ 232 (464)
|.+|++..+...... ..+...+++|+.|.+... ..+...+..+.++++|+.+.+..
T Consensus 620 L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred hheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999999876433322 334445889999999776 33334555666677777777654
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.66 E-value=6.1e-06 Score=53.34 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=36.3
Q ss_pred CCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCc
Q 012414 378 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 439 (464)
Q Consensus 378 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~ 439 (464)
|+|++|++++|. ++...-. ....+++|+.|++++ +.++......+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~-~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPD-SFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTT-TTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHH-HHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 456677776653 4432221 223567777777776 5666655566667777777777776
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.63 E-value=6.8e-06 Score=53.12 Aligned_cols=58 Identities=24% Similarity=0.193 Sum_probs=47.7
Q ss_pred CCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 404 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 404 ~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
|+|+.|++++| .++......+..+++|+.|++++| .++...... ++++|+|+.|++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~-f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDA-FSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTT-TTTSTTESEEEETS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHH-HcCCCCCCEEeCcC
Confidence 68999999994 898777778888999999999999 776543333 37899999999875
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.60 E-value=1e-05 Score=76.18 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=9.0
Q ss_pred hhcccCCceeEecCCC
Q 012414 219 IATLAKLESLVMVGCP 234 (464)
Q Consensus 219 l~~~~~L~~L~l~~~~ 234 (464)
|..+.+|++|.+.+|.
T Consensus 105 ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCD 120 (1096)
T ss_pred eccccceeeEEecCcc
Confidence 4445566666666554
No 51
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=4.3e-05 Score=63.53 Aligned_cols=100 Identities=26% Similarity=0.325 Sum_probs=49.1
Q ss_pred CCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChH-HHHHhhcCCCc
Q 012414 353 NLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDK-GLEYLSRCSEL 431 (464)
Q Consensus 353 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~-~~~~l~~~~~L 431 (464)
+.++|+..|| .++|.++ +..+|.|+.|.++-+. |+. +..+ ..|.+|++|+|.. +.|.+. -+.++.++|+|
T Consensus 20 ~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvNk-Iss--L~pl-~rCtrLkElYLRk-N~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVNK-ISS--LAPL-QRCTRLKELYLRK-NCIESLDELEYLKNLPSL 90 (388)
T ss_pred HhhhhcccCC-CccHHHH---HHhcccceeEEeeccc-ccc--chhH-HHHHHHHHHHHHh-cccccHHHHHHHhcCchh
Confidence 4555555555 4454433 2255666666665422 221 1112 2556666666655 455332 24555566666
Q ss_pred cEEecCCccCCChHHHH---HHHhcCcccceee
Q 012414 432 LFLKLGLCENISDKGLF---YIASNCLRIQGLD 461 (464)
Q Consensus 432 ~~L~l~~~~~i~~~~~~---~~~~~~~~L~~l~ 461 (464)
+.|.|..||--...|-. ..+..+|+|++||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666665433332222 2344556666654
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.21 E-value=6e-05 Score=71.19 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=53.0
Q ss_pred cCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCC
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (464)
.++.++.|++++|++.+. ..+..+++|++|+++.. .+... ..+...--+|..|.++++..-+-.++ .++.+
T Consensus 185 ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~v--p~l~~~gc~L~~L~lrnN~l~tL~gi----e~Lks 255 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHV--PQLSMVGCKLQLLNLRNNALTTLRGI----ENLKS 255 (1096)
T ss_pred HHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhccc--cccchhhhhheeeeecccHHHhhhhH----Hhhhh
Confidence 345667777777765543 25666777777776642 12111 11111111266666665332111222 23456
Q ss_pred CcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCC
Q 012414 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARI 313 (464)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 313 (464)
|+.|+++++-. ....-...+..+..|+.|.|.||++
T Consensus 256 L~~LDlsyNll-~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 256 LYGLDLSYNLL-SEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhccchhHhhh-hcchhhhHHHHHHHHHHHhhcCCcc
Confidence 77777666532 2222334445556667777777653
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.14 E-value=0.00061 Score=34.88 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=11.7
Q ss_pred CCccEEecCCccCCChHHHHHH
Q 012414 429 SELLFLKLGLCENISDKGLFYI 450 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~~~~~~~~ 450 (464)
++|+.|+|++|+++++.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4555555555555555555544
No 54
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.11 E-value=0.00062 Score=34.85 Aligned_cols=23 Identities=43% Similarity=0.964 Sum_probs=12.0
Q ss_pred CCCccEEecCCCCCCChHHHHHh
Q 012414 403 CLRLEEIDLTDCNGVNDKGLEYL 425 (464)
Q Consensus 403 ~~~L~~L~l~~c~~i~~~~~~~l 425 (464)
|++|++|+|++|..++|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555555555555444
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.00018 Score=59.49 Aligned_cols=84 Identities=20% Similarity=0.108 Sum_probs=40.1
Q ss_pred CCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCCh-HHHHHhhcCCCccEEecCCccCCCh-HHHHHHHhcC
Q 012414 377 CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND-KGLEYLSRCSELLFLKLGLCENISD-KGLFYIASNC 454 (464)
Q Consensus 377 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~L~~L~l~~~~~i~~-~~~~~~~~~~ 454 (464)
+|+|+.|.++.+..-...++..++..+|+|+++++++ +++.+ ..+..+..+++|..|++.+|+-... ..-..++..+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4556666665542223334444555556666666666 55553 2233333455566666666632111 1222333445
Q ss_pred cccceee
Q 012414 455 LRIQGLD 461 (464)
Q Consensus 455 ~~L~~l~ 461 (464)
|+|+.|+
T Consensus 143 ~~L~~LD 149 (260)
T KOG2739|consen 143 PSLKYLD 149 (260)
T ss_pred hhhcccc
Confidence 5555554
No 56
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.89 E-value=5.9e-06 Score=63.23 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=36.0
Q ss_pred cCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 273 GHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCV 352 (464)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 352 (464)
.+|.|+.|++.++.. ........+..+..|+.|.++++.+.- +..-...+.+|+.|.+..+.-++ +..-...+.
T Consensus 100 s~p~levldltynnl-~e~~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndll~---lpkeig~lt 173 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNL-NENSLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLT 173 (264)
T ss_pred CCchhhhhhcccccc-ccccCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCchhh---CcHHHHHHH
Confidence 355566666665542 222222223334455555555554211 11111144566666665533221 111112344
Q ss_pred CCcEEeccC
Q 012414 353 NLKTIDLTC 361 (464)
Q Consensus 353 ~L~~L~l~~ 361 (464)
.|++|+|.+
T Consensus 174 ~lrelhiqg 182 (264)
T KOG0617|consen 174 RLRELHIQG 182 (264)
T ss_pred HHHHHhccc
Confidence 566666665
No 57
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.85 E-value=0.00031 Score=65.75 Aligned_cols=115 Identities=31% Similarity=0.456 Sum_probs=70.3
Q ss_pred CCCCcEEecCCCCCCCHHHHHHH---HhcCCC-CcEEeccCCCCCChHHHHHHHhcC----CCCcEEeccCCCCCcHHHH
Q 012414 325 CKSLVEIGLSKCLGVTNTGITQL---VSGCVN-LKTIDLTCCHSITDDAISAIADSC----RGLVCLKIESCNMITEKGL 396 (464)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~-L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~ 396 (464)
..++++|++..|. ++......+ ....+. +.++++.. +.+.|.++..+...+ +.++++++..|. +++.+.
T Consensus 203 ~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~ 279 (478)
T KOG4308|consen 203 LSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGV 279 (478)
T ss_pred cccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccch
Confidence 3457777777754 443333322 223344 66678875 577777777666554 355888888876 666555
Q ss_pred HHHH---hcCCCccEEecCCCCCCChHHHHHhh----cCCCccEEecCCccCCC
Q 012414 397 YQLG---SFCLRLEEIDLTDCNGVNDKGLEYLS----RCSELLFLKLGLCENIS 443 (464)
Q Consensus 397 ~~l~---~~~~~L~~L~l~~c~~i~~~~~~~l~----~~~~L~~L~l~~~~~i~ 443 (464)
..+. ..|+.++.+.++. +.+.+.....+. ....+..+.+.++...+
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred HHHHHHHhhhHHHHHhhccc-CccccHHHHHHHHHhhhcccchhhhccccCccc
Confidence 5444 3567888888888 788777765543 34556666666553333
No 58
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.84 E-value=7.3e-06 Score=62.76 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=7.0
Q ss_pred HhcCCCCcEEEcCCC
Q 012414 297 MRDLKNLEAITMDGA 311 (464)
Q Consensus 297 ~~~~~~L~~L~l~~~ 311 (464)
++.+..|++|.+.++
T Consensus 169 ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHHHHhcccc
Confidence 334444444444444
No 59
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.79 E-value=0.00086 Score=59.80 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=35.7
Q ss_pred ccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhcc
Q 012414 6 ALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSV 44 (464)
Q Consensus 6 ~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~ 44 (464)
.|++||+|++..|..+|+..-|+.+++.||+.||..+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 599999999999999998788999999999999997653
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.79 E-value=0.0021 Score=37.89 Aligned_cols=38 Identities=39% Similarity=0.411 Sum_probs=25.0
Q ss_pred CCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCCh
Q 012414 404 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 444 (464)
Q Consensus 404 ~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~ 444 (464)
++|++|++++ +.+++... .+..+++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~-~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPP-ELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETS-SS-SSHGG-HGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccC-CCCcccCc-hHhCCCCCCEEEecCC-CCCC
Confidence 4678888888 57775432 3677888888888888 5553
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.74 E-value=0.0027 Score=57.50 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=38.7
Q ss_pred cCCCCcEEEccCcccChhHHHHhhcc-cCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCC
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSIATL-AKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHS 275 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 275 (464)
.|++++.|++++|.+..- ..+ ++|++|.+.+|..+.... ..+ .++|++|.+.+|..+.. -.+
T Consensus 50 ~~~~l~~L~Is~c~L~sL-----P~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~s--------LP~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-----PVLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEISG--------LPE 112 (426)
T ss_pred HhcCCCEEEeCCCCCccc-----CCCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCcccccc--------ccc
Confidence 467888888887744322 123 357788877765442211 001 24677777776643321 123
Q ss_pred CCcEEeccC
Q 012414 276 GLLQLDAGH 284 (464)
Q Consensus 276 ~L~~L~l~~ 284 (464)
+|+.|.+..
T Consensus 113 sLe~L~L~~ 121 (426)
T PRK15386 113 SVRSLEIKG 121 (426)
T ss_pred ccceEEeCC
Confidence 566666543
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.00032 Score=58.10 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=52.1
Q ss_pred CCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccCh-hHHHHhhcccCCceeEecCCCCCCh-hHHHHHHhcCC
Q 012414 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTN-DSFCSIATLAKLESLVMVGCPCVDD-TGLRFLESGCP 249 (464)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~ 249 (464)
+|+|++|.++.+..-...++..++..+|+|+++++++|++.+ ..+..+..+++|..|++.+|....- ..-..+..-+|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 667777777765333344555666677888888888886653 3444556677788888877653221 11122223356
Q ss_pred CCceeeccc
Q 012414 250 LLKTIFVSR 258 (464)
Q Consensus 250 ~L~~L~l~~ 258 (464)
+|+.|+-..
T Consensus 144 ~L~~LD~~d 152 (260)
T KOG2739|consen 144 SLKYLDGCD 152 (260)
T ss_pred hhccccccc
Confidence 676666543
No 63
>PLN03150 hypothetical protein; Provisional
Probab=96.57 E-value=0.0042 Score=61.12 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=51.2
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCcc
Q 012414 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLE 407 (464)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 407 (464)
++.|+++++ .+....... +..+++|+.|+++++ .+.......+ ..+++|+.|++++|. ++...-.. ...+++|+
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~-~~l~~L~~LdLs~N~-lsg~iP~~-l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSL-GSITSLEVLDLSYNS-FNGSIPES-LGQLTSLR 493 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCC-cccCcCChHH-hCCCCCCEEECCCCC-CCCCCchH-HhcCCCCC
Confidence 555666553 232211122 235667777777664 3332222222 256677777776654 33211112 22566777
Q ss_pred EEecCCCCCCChHHHHHhhc-CCCccEEecCCcc
Q 012414 408 EIDLTDCNGVNDKGLEYLSR-CSELLFLKLGLCE 440 (464)
Q Consensus 408 ~L~l~~c~~i~~~~~~~l~~-~~~L~~L~l~~~~ 440 (464)
.|++++ +.++......+.. ..++..+++.+|+
T Consensus 494 ~L~Ls~-N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNG-NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcC-CcccccCChHHhhccccCceEEecCCc
Confidence 777766 3554433333332 2345566666554
No 64
>PLN03150 hypothetical protein; Provisional
Probab=96.55 E-value=0.0052 Score=60.51 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=71.0
Q ss_pred CCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCc
Q 012414 123 LLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLK 202 (464)
Q Consensus 123 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 202 (464)
.++.|++.++. +.......+..+++|+.|++++ +.+.......+ ..+++|+.|+++++ .+....... ...+++|+
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~-N~l~g~iP~~~-~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDISKLRHLQSINLSG-NSIRGNIPPSL-GSITSLEVLDLSYN-SFNGSIPES-LGQLTSLR 493 (623)
T ss_pred EEEEEECCCCC-ccccCCHHHhCCCCCCEEECCC-CcccCcCChHH-hCCCCCCEEECCCC-CCCCCCchH-HhcCCCCC
Confidence 37788888754 4444455678889999999988 34543333333 34899999999987 444322222 33788999
Q ss_pred EEEccCcccChhHHHHhhc-ccCCceeEecCC
Q 012414 203 SLDVSYLKLTNDSFCSIAT-LAKLESLVMVGC 233 (464)
Q Consensus 203 ~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~ 233 (464)
.|++++|.+.......+.. ..++..+++.++
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCC
Confidence 9999999777655555554 346677777764
No 65
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.18 E-value=0.0022 Score=60.20 Aligned_cols=196 Identities=18% Similarity=0.227 Sum_probs=126.5
Q ss_pred Cceeecccccc--cChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHh----cC-CCCcEEEcCCCCCChHHHHHHHH
Q 012414 251 LKTIFVSRCKF--VSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR----DL-KNLEAITMDGARISDSCFQTISF 323 (464)
Q Consensus 251 L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~~l~~ 323 (464)
+..+.+.+|.. -....+...+...++|+.|+++++. +.+.....+. .. +.++.|++..|.++..+...+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~--l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN--LGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC--CccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 44555555431 1223444556667889999999887 4444444333 22 46788888888777766555442
Q ss_pred ---hCCCCcEEecCCCCCCCHHHHHHHH---h----cCCCCcEEeccCCCCCChHHHHHHHhc---CCC-CcEEeccCCC
Q 012414 324 ---NCKSLVEIGLSKCLGVTNTGITQLV---S----GCVNLKTIDLTCCHSITDDAISAIADS---CRG-LVCLKIESCN 389 (464)
Q Consensus 324 ---~~~~L~~L~l~~~~~~~~~~~~~~~---~----~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~-L~~L~l~~~~ 389 (464)
....++.++++.+... ..+...+. . ...++++|++.+| .++......+... .+. +.++++..+
T Consensus 167 ~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n- 243 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN- 243 (478)
T ss_pred HHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-
Confidence 3567888888875433 33332221 1 3457899999987 5566555544433 344 666888764
Q ss_pred CCcHHHHHHHHhcC----CCccEEecCCCCCCChHHHHHhh----cCCCccEEecCCccCCChHHHHHHHhc
Q 012414 390 MITEKGLYQLGSFC----LRLEEIDLTDCNGVNDKGLEYLS----RCSELLFLKLGLCENISDKGLFYIASN 453 (464)
Q Consensus 390 ~~~~~~~~~l~~~~----~~L~~L~l~~c~~i~~~~~~~l~----~~~~L~~L~l~~~~~i~~~~~~~~~~~ 453 (464)
.+.+.++..+...+ +.++.+++..| .+++.+...+. .++.++.+.+++| .+.+.+...+++.
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~ 313 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEA 313 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHH
Confidence 47777777776544 46699999994 88777665554 5789999999988 7878777766553
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.0023 Score=53.58 Aligned_cols=115 Identities=25% Similarity=0.331 Sum_probs=66.6
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccCh-hHHHHhhcccC
Q 012414 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTN-DSFCSIATLAK 224 (464)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~ 224 (464)
+.+.+.|+..+| ++++. .+...++.|+.|.|+-+ .++. +..+ ..|.+|++|+|..|.|.+ ..+..+.++|+
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIss--L~pl-~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISS--LAPL-QRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-cccc--chhH-HHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 346677777774 45553 23345788888888755 3332 2222 267888888888876654 34555667888
Q ss_pred CceeEecCCCCCChhHH---HHHHhcCCCCceeecccccccChhHHHHHH
Q 012414 225 LESLVMVGCPCVDDTGL---RFLESGCPLLKTIFVSRCKFVSSTGLISVI 271 (464)
Q Consensus 225 L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 271 (464)
|+.|.+...+.....+- ......+|+|+.|+=. .++...+...+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv---~VteeEle~AL 136 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV---PVTEEELEEAL 136 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhccCc---cccHHHHHHHH
Confidence 88888776443333222 2233346777777632 24555554443
No 67
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.11 E-value=0.0037 Score=53.16 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=33.6
Q ss_pred CccCCCcHHHHHHHHHHhC----CccchhhHHhhhhHHHhhhccc
Q 012414 5 SALDVLTEDLLVRVREKIG----DELDSKTWRLVCKEFSRVDSVT 45 (464)
Q Consensus 5 ~~~~~LP~eil~~I~~~L~----~~~d~~~~~~vc~~w~~~~~~~ 45 (464)
..|..|||||+..||+.+- +.+++.++++|||.|+..+...
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~ 149 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP 149 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence 3578899999999999653 2589999999999998876543
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.09 E-value=0.0025 Score=54.55 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=39.1
Q ss_pred CCCCCccCCCc----HHHHHHHHHHhCCccchhhHHhhhhHHHhhhccc
Q 012414 1 MPGSSALDVLT----EDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (464)
Q Consensus 1 ~~~~~~~~~LP----~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~ 45 (464)
|...|.+..|| ++|-+.||+||+ ..++..+-+||++|+++..+.
T Consensus 69 mLqrDFi~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~dg 116 (499)
T KOG0281|consen 69 MLQRDFITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSDG 116 (499)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhccc
Confidence 44567889999 999999999999 999999999999999987654
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.87 E-value=0.0084 Score=55.93 Aligned_cols=59 Identities=31% Similarity=0.363 Sum_probs=26.3
Q ss_pred CCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCC
Q 012414 250 LLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARIS 314 (464)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 314 (464)
+|+.|++++.. +.. +..-...+++|+.|+++++.. ..........+.|+.|.++++.+.
T Consensus 141 nL~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~~N~l---~~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 141 NLKELDLSDNK-IES--LPSPLRNLPNLKNLDLSFNDL---SDLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hcccccccccc-hhh--hhhhhhccccccccccCCchh---hhhhhhhhhhhhhhheeccCCccc
Confidence 56666665532 111 111233455666666655531 111122224455555555555443
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.78 E-value=0.0074 Score=56.29 Aligned_cols=174 Identities=19% Similarity=0.173 Sum_probs=108.1
Q ss_pred CCCCceeecccccccChhHHHHHHhcC-CCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCC
Q 012414 248 CPLLKTIFVSRCKFVSSTGLISVIRGH-SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCK 326 (464)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 326 (464)
.+.++.+.+.+.. +.. +....... ++|+.|+++.+.. ......+..+++|+.|+++.|++.+..... ...+
T Consensus 115 ~~~l~~L~l~~n~-i~~--i~~~~~~~~~nL~~L~l~~N~i---~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~~ 186 (394)
T COG4886 115 LTNLTSLDLDNNN-ITD--IPPLIGLLKSNLKELDLSDNKI---ESLPSPLRNLPNLKNLDLSFNDLSDLPKLL--SNLS 186 (394)
T ss_pred ccceeEEecCCcc-ccc--Cccccccchhhcccccccccch---hhhhhhhhccccccccccCCchhhhhhhhh--hhhh
Confidence 3678888887643 222 22222234 3899999887752 222256788999999999999876644322 1567
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCc
Q 012414 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406 (464)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 406 (464)
+|+.|+++++ .+.+ +.........|+++.+++...+.... ....+.++..+.+.+.. +.+ .......++++
T Consensus 187 ~L~~L~ls~N-~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~-~~~--~~~~~~~l~~l 257 (394)
T COG4886 187 NLNNLDLSGN-KISD--LPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNK-LED--LPESIGNLSNL 257 (394)
T ss_pred hhhheeccCC-cccc--CchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCce-eee--ccchhcccccc
Confidence 8999999884 4544 22221233458899888753222211 11245666667665543 222 12233466789
Q ss_pred cEEecCCCCCCChHHHHHhhcCCCccEEecCCccC
Q 012414 407 EEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCEN 441 (464)
Q Consensus 407 ~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~ 441 (464)
+.|++++ +.+++... +....+++.|+++++..
T Consensus 258 ~~L~~s~-n~i~~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 258 ETLDLSN-NQISSISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ceecccc-cccccccc--ccccCccCEEeccCccc
Confidence 9999999 57776544 67789999999999843
No 71
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.72 E-value=0.0089 Score=35.19 Aligned_cols=33 Identities=30% Similarity=0.219 Sum_probs=25.6
Q ss_pred CCccEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 429 SELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
++|++|++++| ++++ +...+..+++|+.|++++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSN 33 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETS
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecC
Confidence 58999999999 8886 444358999999999874
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.65 E-value=0.0091 Score=47.69 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=14.4
Q ss_pred CCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCC
Q 012414 378 RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (464)
Q Consensus 378 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 413 (464)
|+|+.|.+.++.-..-..+..++ .||.|+.|.+-+
T Consensus 88 p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 88 PNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLG 122 (233)
T ss_pred cccceEEecCcchhhhhhcchhc-cCCccceeeecC
Confidence 44555555443311112223333 445555555444
No 73
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.54 E-value=0.0051 Score=49.05 Aligned_cols=59 Identities=24% Similarity=0.236 Sum_probs=25.9
Q ss_pred CCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccCh-hHHHHhhcccCCceeEecC
Q 012414 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTN-DSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~ 232 (464)
+++|..|.+.++ .++.... .+....|+|+.|.+.+|.+-. ..+..++.+|+|+.|.+-+
T Consensus 63 l~rL~tLll~nN-rIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 63 LPRLHTLLLNNN-RITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccccceEEecCC-cceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 455555555544 3332111 122234555555555553322 1233344455555555544
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.21 E-value=0.019 Score=28.59 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=10.3
Q ss_pred CCccEEecCCccCCChHHHHHH
Q 012414 429 SELLFLKLGLCENISDKGLFYI 450 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~~~~~~~~ 450 (464)
++|+.|+|++| .+++.++.++
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 45555555555 4555555544
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.70 E-value=0.019 Score=42.83 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=60.4
Q ss_pred CCCcEEeccCCCCC-ChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCC
Q 012414 352 VNLKTIDLTCCHSI-TDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSE 430 (464)
Q Consensus 352 ~~L~~L~l~~~~~l-~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~ 430 (464)
..+-.++++.|.-. -.+.+..+. ....|+.++++++. +.+ .-..+...+|.++.|++.+ +.+.+...+ ++.+|.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~a 101 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPA 101 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHh-CCceEEEEecccch-hhh-CCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHH
Confidence 35667888888432 123333333 45577778887643 221 1224555678999999999 899988777 889999
Q ss_pred ccEEecCCccCCCh
Q 012414 431 LLFLKLGLCENISD 444 (464)
Q Consensus 431 L~~L~l~~~~~i~~ 444 (464)
|+.|++..|+....
T Consensus 102 Lr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 102 LRSLNLRFNPLNAE 115 (177)
T ss_pred hhhcccccCccccc
Confidence 99999999965443
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.51 E-value=0.082 Score=48.24 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=77.6
Q ss_pred HhcCCCCcEEeccCCCccccHHHHHHHhcCC-CCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012414 271 IRGHSGLLQLDAGHCFSELSTTLLHHMRDLK-NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVS 349 (464)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 349 (464)
+..++++++|++++|.. .. +..+| +|+.|.++++.-- ..+... ..++|+.|.+++|..+..
T Consensus 48 ~~~~~~l~~L~Is~c~L--~s-----LP~LP~sLtsL~Lsnc~nL-tsLP~~--LP~nLe~L~Ls~Cs~L~s-------- 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDI--ES-----LPVLPNELTEITIENCNNL-TTLPGS--IPEGLEKLTVCHCPEISG-------- 109 (426)
T ss_pred HHHhcCCCEEEeCCCCC--cc-----cCCCCCCCcEEEccCCCCc-ccCCch--hhhhhhheEccCcccccc--------
Confidence 33478899999998852 21 22344 7899998876321 111111 125789999988754431
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcC-CCccEEecCCCCCCChHHHHHhhcC
Q 012414 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFC-LRLEEIDLTDCNGVNDKGLEYLSRC 428 (464)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~c~~i~~~~~~~l~~~ 428 (464)
-.++|+.|++.. ..... + ..-.++|+.|.+.++......+.. ..+ ++|+.|.+++|..+.. ... -.
T Consensus 110 LP~sLe~L~L~~-n~~~~--L---~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~L--P~~--LP 176 (426)
T PRK15386 110 LPESVRSLEIKG-SATDS--I---KNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNIIL--PEK--LP 176 (426)
T ss_pred cccccceEEeCC-CCCcc--c---ccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcccC--ccc--cc
Confidence 125788888864 33221 1 212257888887543211111111 123 5799999999865421 011 12
Q ss_pred CCccEEecCCc
Q 012414 429 SELLFLKLGLC 439 (464)
Q Consensus 429 ~~L~~L~l~~~ 439 (464)
.+|+.|.++.+
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 58888888765
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.68 E-value=0.058 Score=26.76 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=8.3
Q ss_pred CCCcEEEccCcccChhHHHH
Q 012414 199 LDLKSLDVSYLKLTNDSFCS 218 (464)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~ 218 (464)
++|++|++++|.+++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34444555444444444433
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.67 E-value=0.021 Score=42.66 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 012414 325 CKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCN 389 (464)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 389 (464)
...|+..+++++ .+.+ ....+...++.++.|++.+ +.+++...+ ++ .+|.|+.|+++.++
T Consensus 52 ~~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~-neisdvPeE-~A-am~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 52 GYELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLAN-NEISDVPEE-LA-AMPALRSLNLRFNP 111 (177)
T ss_pred CceEEEEecccc-hhhh-CCHHHhhccchhhhhhcch-hhhhhchHH-Hh-hhHHhhhcccccCc
Confidence 344555566553 2221 1123333455666666665 344544433 33 46666666666655
No 79
>PF13013 F-box-like_2: F-box-like domain
Probab=93.49 E-value=0.077 Score=38.24 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=26.9
Q ss_pred cCCCcHHHHHHHHHHhCCccchhhHHhhhh
Q 012414 7 LDVLTEDLLVRVREKIGDELDSKTWRLVCK 36 (464)
Q Consensus 7 ~~~LP~eil~~I~~~L~~~~d~~~~~~vc~ 36 (464)
+.+||+|++..||++.+ ..++..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 78899999999999999 999988888888
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.20 E-value=0.14 Score=26.59 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=15.3
Q ss_pred CCccEEecCCccCCChHHHHHHHhc
Q 012414 429 SELLFLKLGLCENISDKGLFYIASN 453 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~~~~~~~~~~~ 453 (464)
++|++|+|++| .+++.|...+.+.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHH
Confidence 45667777766 6666666666543
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.52 E-value=0.019 Score=53.84 Aligned_cols=170 Identities=21% Similarity=0.212 Sum_probs=79.6
Q ss_pred CCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCC
Q 012414 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS 327 (464)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 327 (464)
+.+|+.+++.+.. + ..+......+++|++|+++++.. .....+..++.|+.|++.+|.+....-.. .++.
T Consensus 94 ~~~l~~l~l~~n~-i--~~i~~~l~~~~~L~~L~ls~N~I----~~i~~l~~l~~L~~L~l~~N~i~~~~~~~---~l~~ 163 (414)
T KOG0531|consen 94 LKSLEALDLYDNK-I--EKIENLLSSLVNLQVLDLSFNKI----TKLEGLSTLTLLKELNLSGNLISDISGLE---SLKS 163 (414)
T ss_pred ccceeeeeccccc-h--hhcccchhhhhcchheecccccc----ccccchhhccchhhheeccCcchhccCCc---cchh
Confidence 5667777776532 1 11122134467777777776542 12233444555777777777654422111 2456
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCC--C
Q 012414 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCL--R 405 (464)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~--~ 405 (464)
|+.++++++ .+.+..... ...+.+++.+.+.+........+... ..+..+++..+.-..-.++. ... .
T Consensus 164 L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~----~~l~~~~l~~n~i~~~~~l~----~~~~~~ 233 (414)
T KOG0531|consen 164 LKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGLDLL----KKLVLLSLLDNKISKLEGLN----ELVMLH 233 (414)
T ss_pred hhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccchHHH----HHHHHhhcccccceeccCcc----cchhHH
Confidence 666666653 233322211 23556666666665322111112111 11222222221100111111 111 3
Q ss_pred ccEEecCCCCCCChHHHHHhhcCCCccEEecCCc
Q 012414 406 LEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 439 (464)
Q Consensus 406 L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~ 439 (464)
|+.+++++ +.+.... ..+..++.++.+++..+
T Consensus 234 L~~l~l~~-n~i~~~~-~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 234 LRELYLSG-NRISRSP-EGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHHhccc-Ccccccc-ccccccccccccchhhc
Confidence 77777777 5665432 33445777788888776
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=92.32 E-value=0.29 Score=45.80 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=20.3
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCC
Q 012414 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESC 388 (464)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 388 (464)
..|.+..+.++++.-..-+.+..+.+..|+|+.|+|+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 445555555555433333444455555566666666554
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.27 E-value=0.78 Score=23.74 Aligned_cols=23 Identities=9% Similarity=0.284 Sum_probs=15.6
Q ss_pred CCCcEEEcCCCCCChHHHHHHHH
Q 012414 301 KNLEAITMDGARISDSCFQTISF 323 (464)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~l~~ 323 (464)
++|+.|+|++|.+.+.+...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45677777777777777666653
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.57 E-value=0.27 Score=46.10 Aligned_cols=105 Identities=29% Similarity=0.262 Sum_probs=68.0
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcC
Q 012414 324 NCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFC 403 (464)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 403 (464)
.+.+|+.+++.++ .+.. +......+++|+.|++++ +.|++. ..+. .++.|+.|++.++. ++...- + ..+
T Consensus 93 ~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i--~~l~-~l~~L~~L~l~~N~-i~~~~~--~-~~l 161 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITKL--EGLS-TLTLLKELNLSGNL-ISDISG--L-ESL 161 (414)
T ss_pred cccceeeeecccc-chhh--cccchhhhhcchheeccc-cccccc--cchh-hccchhhheeccCc-chhccC--C-ccc
Confidence 5678888888773 3433 222134678999999998 455442 2222 35569999999876 333211 1 136
Q ss_pred CCccEEecCCCCCCChHHH-HHhhcCCCccEEecCCccC
Q 012414 404 LRLEEIDLTDCNGVNDKGL-EYLSRCSELLFLKLGLCEN 441 (464)
Q Consensus 404 ~~L~~L~l~~c~~i~~~~~-~~l~~~~~L~~L~l~~~~~ 441 (464)
+.|+.+++++ +.+.+... . +..+.+++.+.+.+|..
T Consensus 162 ~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 162 KSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred hhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCch
Confidence 7899999988 56654433 2 46788999999999843
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.17 E-value=0.2 Score=48.14 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=39.2
Q ss_pred CCccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhcccccce
Q 012414 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTL 49 (464)
Q Consensus 4 ~~~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~~~~~ 49 (464)
.+.+..||.|+-..|+.+|+ .+++.+++.||+.|+.++.....++
T Consensus 105 ~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhhhccchhh
Confidence 36788999999999999999 8999999999999999876654433
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.82 E-value=0.66 Score=20.71 Aligned_cols=10 Identities=30% Similarity=0.155 Sum_probs=5.4
Q ss_pred CccEEecCCc
Q 012414 430 ELLFLKLGLC 439 (464)
Q Consensus 430 ~L~~L~l~~~ 439 (464)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 5566666666
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.44 E-value=2.4 Score=40.03 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=46.0
Q ss_pred cCCCCcEEEcCCCCC-ChHHHHHHHHhCCCCcEEecCCCC-CC-CHHHHHHHHhcCCCCcEEeccCCCCCCh-----HHH
Q 012414 299 DLKNLEAITMDGARI-SDSCFQTISFNCKSLVEIGLSKCL-GV-TNTGITQLVSGCVNLKTIDLTCCHSITD-----DAI 370 (464)
Q Consensus 299 ~~~~L~~L~l~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~ 370 (464)
+.+.+..+.+++|++ .-+.+..+....|+|+.|+|+++. .+ ++..+..+ ....|++|.+.|++-.+. +-+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHH
Confidence 567777777777763 234555666677777777777641 11 11112211 334577777776432221 223
Q ss_pred HHHHhcCCCCcEEec
Q 012414 371 SAIADSCRGLVCLKI 385 (464)
Q Consensus 371 ~~l~~~~~~L~~L~l 385 (464)
..+-+.+|+|..|+=
T Consensus 294 ~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDG 308 (585)
T ss_pred HHHHHhcchheeecC
Confidence 344445676666553
No 88
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=82.77 E-value=1.1 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=17.3
Q ss_pred CccEEecCCccCCChHHHHHHHhcCc
Q 012414 430 ELLFLKLGLCENISDKGLFYIASNCL 455 (464)
Q Consensus 430 ~L~~L~l~~~~~i~~~~~~~~~~~~~ 455 (464)
+|++|.+.....-.+..++.++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 46777777764444456777777776
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.07 E-value=0.15 Score=38.68 Aligned_cols=80 Identities=21% Similarity=0.396 Sum_probs=31.5
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCC
Q 012414 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCS 429 (464)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 429 (464)
.+++|+.+++.. .+....-. ...+++.|+.+.+.+. +...+-. ....+++|+.+.+.. .+.......+.++
T Consensus 33 ~~~~l~~i~~~~--~~~~i~~~-~F~~~~~l~~i~~~~~--~~~i~~~-~F~~~~~l~~i~~~~--~~~~i~~~~f~~~- 103 (129)
T PF13306_consen 33 NCTSLKSINFPN--NLTSIGDN-AFSNCKSLESITFPNN--LKSIGDN-AFSNCTNLKNIDIPS--NITEIGSSSFSNC- 103 (129)
T ss_dssp T-TT-SEEEESS--TTSCE-TT-TTTT-TT-EEEEETST--T-EE-TT-TTTT-TTECEEEETT--T-BEEHTTTTTT--
T ss_pred cccccccccccc--ccccccee-eeeccccccccccccc--ccccccc-cccccccccccccCc--cccEEchhhhcCC-
Confidence 445666666653 12221111 1224556677766431 2211111 222466777777754 2443333445555
Q ss_pred CccEEecCC
Q 012414 430 ELLFLKLGL 438 (464)
Q Consensus 430 ~L~~L~l~~ 438 (464)
+|+.+.+..
T Consensus 104 ~l~~i~~~~ 112 (129)
T PF13306_consen 104 NLKEINIPS 112 (129)
T ss_dssp T--EEE-TT
T ss_pred CceEEEECC
Confidence 777777654
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=74.42 E-value=0.31 Score=36.90 Aligned_cols=9 Identities=44% Similarity=1.150 Sum_probs=3.6
Q ss_pred CCCCcEEEc
Q 012414 198 CLDLKSLDV 206 (464)
Q Consensus 198 ~~~L~~L~l 206 (464)
+++|+.+.+
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 344444444
No 91
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=73.10 E-value=4.4 Score=34.31 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=34.2
Q ss_pred CCccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhc
Q 012414 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDS 43 (464)
Q Consensus 4 ~~~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~ 43 (464)
+..+.+||.|+..+|+..+++.+|+..++.|-.....+..
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 4578999999999999999999999999988776666543
No 92
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=66.34 E-value=16 Score=32.39 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCC---CCcEEeccCCC--CCcHHHHHHHHhcCCCccEEecCCCCC
Q 012414 342 TGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCR---GLVCLKIESCN--MITEKGLYQLGSFCLRLEEIDLTDCNG 416 (464)
Q Consensus 342 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~---~L~~L~l~~~~--~~~~~~~~~l~~~~~~L~~L~l~~c~~ 416 (464)
..+..+-..-+.++..+|.+...+....+..+...+. ..+...+.+.. .....++..+...++.|+.|++.+ +.
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnves-nF 266 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVES-NF 266 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccc-cc
Confidence 3344444445788888888877787777766665443 33444443322 122344555666788899999988 78
Q ss_pred CChHHHHHhhc----CCCccEEecCC
Q 012414 417 VNDKGLEYLSR----CSELLFLKLGL 438 (464)
Q Consensus 417 i~~~~~~~l~~----~~~L~~L~l~~ 438 (464)
|+..++-++.. -.+|..+.+.+
T Consensus 267 Itg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 267 ITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred cccHHHHHHHHHHhccchhhHhhhhh
Confidence 88888766553 35666665543
No 93
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=65.74 E-value=3 Score=19.99 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=9.6
Q ss_pred CccEEecCCccCCC
Q 012414 430 ELLFLKLGLCENIS 443 (464)
Q Consensus 430 ~L~~L~l~~~~~i~ 443 (464)
+|++|++++| +++
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 4788888888 655
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.91 E-value=8.7 Score=19.13 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=8.8
Q ss_pred CCccEEecCCccCCCh
Q 012414 429 SELLFLKLGLCENISD 444 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~~ 444 (464)
++|+.|++.+| +++.
T Consensus 2 ~~L~~L~L~~N-~l~~ 16 (26)
T smart00370 2 PNLRELDLSNN-QLSS 16 (26)
T ss_pred CCCCEEECCCC-cCCc
Confidence 45666666666 4443
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.91 E-value=8.7 Score=19.13 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=8.8
Q ss_pred CCccEEecCCccCCCh
Q 012414 429 SELLFLKLGLCENISD 444 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~~ 444 (464)
++|+.|++.+| +++.
T Consensus 2 ~~L~~L~L~~N-~l~~ 16 (26)
T smart00369 2 PNLRELDLSNN-QLSS 16 (26)
T ss_pred CCCCEEECCCC-cCCc
Confidence 45666666666 4443
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.87 E-value=20 Score=33.49 Aligned_cols=124 Identities=14% Similarity=0.071 Sum_probs=65.8
Q ss_pred CCcEEecCCCCCCCHHHHHHH--HhcCCCCcEEeccCCCC--CCh-----HHHHHHHhcCCCCcEEeccCCCCCcH--HH
Q 012414 327 SLVEIGLSKCLGVTNTGITQL--VSGCVNLKTIDLTCCHS--ITD-----DAISAIADSCRGLVCLKIESCNMITE--KG 395 (464)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~--l~~-----~~~~~l~~~~~~L~~L~l~~~~~~~~--~~ 395 (464)
.++.+....++ .... ...+ ....+..+.+++..-.. +-+ ..+........-+..+.++.|+.=.+ ..
T Consensus 355 R~q~l~~rdnn-ldge-g~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~ 432 (553)
T KOG4242|consen 355 RVQVLLQRDNN-LDGE-GGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESA 432 (553)
T ss_pred eeeEeeccccc-cccc-cccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHH
Confidence 36666666532 2211 1111 12345667776654322 111 11222222345677788877762111 11
Q ss_pred HHHHHhcCCCccEEecCCCCCCChHHHHHhhc----CCCccEEecCCccCCChHHHHHHHhcCc
Q 012414 396 LYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR----CSELLFLKLGLCENISDKGLFYIASNCL 455 (464)
Q Consensus 396 ~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~----~~~L~~L~l~~~~~i~~~~~~~~~~~~~ 455 (464)
+..+. .-+.+.+|++++ +...+.+-.-+.+ ...++.+..+.| .+++.++..+.+..|
T Consensus 433 in~l~-stqtl~kldisg-n~mgd~gap~lpkalq~n~rlr~ipds~n-~p~~~gl~p~~~~~p 493 (553)
T KOG4242|consen 433 INKLL-STQTLAKLDISG-NGMGDGGAPPLPKALQSNCRLRPIPDSLN-LPEDPGLGPRNEERP 493 (553)
T ss_pred HHhhc-cCcccccccccC-CCcccCCCCcCccccCCCCccCCCCCCCC-Cccccccchhhhhcc
Confidence 22222 347899999999 7887766544432 346777777777 677777766655444
No 97
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=52.49 E-value=2.8 Score=39.88 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=16.3
Q ss_pred CCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCC
Q 012414 379 GLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (464)
Q Consensus 379 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (464)
.|..|++++ ++++...+. +.++..|+.|-|.+ +.+.
T Consensus 212 pLi~lDfSc-Nkis~iPv~--fr~m~~Lq~l~Len-NPLq 247 (722)
T KOG0532|consen 212 PLIRLDFSC-NKISYLPVD--FRKMRHLQVLQLEN-NPLQ 247 (722)
T ss_pred ceeeeeccc-Cceeecchh--hhhhhhheeeeecc-CCCC
Confidence 455555553 224332221 22445566666655 4443
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=47.15 E-value=18 Score=18.31 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=10.2
Q ss_pred CCccEEecCCccCCC
Q 012414 429 SELLFLKLGLCENIS 443 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~ 443 (464)
++|+.|++++| +|+
T Consensus 2 ~~L~~L~L~~N-kI~ 15 (26)
T smart00365 2 TNLEELDLSQN-KIK 15 (26)
T ss_pred CccCEEECCCC-ccc
Confidence 57888888888 553
No 99
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=43.68 E-value=21 Score=31.73 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=33.0
Q ss_pred CccCCCcHHHHHHHHHHhCC-------ccchhhHHhhhhHHHhhhccc
Q 012414 5 SALDVLTEDLLVRVREKIGD-------ELDSKTWRLVCKEFSRVDSVT 45 (464)
Q Consensus 5 ~~~~~LP~eil~~I~~~L~~-------~~d~~~~~~vc~~w~~~~~~~ 45 (464)
+.|..||.|.+..|...... .+..+.++-||+.|+.+....
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 47889999999999998852 335678899999999976544
No 100
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=43.32 E-value=7.6 Score=37.15 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=24.9
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecCCC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCP 234 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 234 (464)
.-.|..||++.|+++. ....+.+++.|++|.+.+.+
T Consensus 210 ~LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred CCceeeeecccCceee-cchhhhhhhhheeeeeccCC
Confidence 3467788888887653 23446678888888888644
No 101
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=41.69 E-value=18 Score=26.87 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=24.6
Q ss_pred HHHHhcCCCccEEecCC--CCCCChHHHHHhhcCCCccEEecCCc--cCCChHHHHHHHhcCcccc
Q 012414 397 YQLGSFCLRLEEIDLTD--CNGVNDKGLEYLSRCSELLFLKLGLC--ENISDKGLFYIASNCLRIQ 458 (464)
Q Consensus 397 ~~l~~~~~~L~~L~l~~--c~~i~~~~~~~l~~~~~L~~L~l~~~--~~i~~~~~~~~~~~~~~L~ 458 (464)
..+...|+.|.. +++. ..++++ .-..+..++.| ..+|..- .++ .....+..+|++|+
T Consensus 54 ~~mF~~~~~l~~-dls~w~~s~v~~-~~~mF~~~~~l-~~~l~~wn~~~v--~~~~~mF~~~~~l~ 114 (120)
T PF03382_consen 54 SGMFAGCSSLNQ-DLSNWDTSNVTN-MSNMFSGCSSL-NQDLSNWNTSSV--TNMSSMFANCSNLN 114 (120)
T ss_pred HHHHhhhhhcCC-Cccccccccccc-HHHHHhhhHHc-CCchhhcccccc--ccHHHHHhChHhcc
Confidence 344445566666 5544 112221 12333345555 3444322 122 23455555665543
No 102
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=29.91 E-value=1.6e+02 Score=19.03 Aligned_cols=14 Identities=50% Similarity=0.468 Sum_probs=5.9
Q ss_pred CCcEEeccCCCCCc
Q 012414 379 GLVCLKIESCNMIT 392 (464)
Q Consensus 379 ~L~~L~l~~~~~~~ 392 (464)
+++.+.+.+...++
T Consensus 12 ~~~~l~i~~~~~it 25 (70)
T PF07735_consen 12 NLEKLSISSSNWIT 25 (70)
T ss_pred CCCEEEEccCCccc
Confidence 44445554333333
No 103
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=29.62 E-value=38 Score=17.23 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=10.3
Q ss_pred HHHhcCcccceeee
Q 012414 449 YIASNCLRIQGLDL 462 (464)
Q Consensus 449 ~~~~~~~~L~~l~l 462 (464)
.++..+|+|+.||.
T Consensus 7 ~Vi~~LPqL~~LD~ 20 (26)
T smart00446 7 KVIRLLPQLRKLDX 20 (26)
T ss_pred HHHHHCCccceecc
Confidence 45667888888875
No 104
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=28.80 E-value=1.8e+02 Score=26.22 Aligned_cols=86 Identities=8% Similarity=0.122 Sum_probs=47.9
Q ss_pred hHHHHHHhcCCCCceeecccccccChhHHHHHHhc---CCCCcEEeccCCCc--cccHHHHHHHhcCCCCcEEEcCCCCC
Q 012414 239 TGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRG---HSGLLQLDAGHCFS--ELSTTLLHHMRDLKNLEAITMDGARI 313 (464)
Q Consensus 239 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~ 313 (464)
..+..+...-|.++..++.....++...+..+... .+..+.+.+.+... .....+...+.-++.|++|+++++.|
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFI 267 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFI 267 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccccc
Confidence 34455555557888888877666666655544433 33444444443321 02222333444566777777777777
Q ss_pred ChHHHHHHHHh
Q 012414 314 SDSCFQTISFN 324 (464)
Q Consensus 314 ~~~~~~~l~~~ 324 (464)
+..++.++...
T Consensus 268 tg~gi~a~~~a 278 (353)
T KOG3735|consen 268 TGLGIMALLRA 278 (353)
T ss_pred ccHHHHHHHHH
Confidence 77776666543
No 105
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=22.00 E-value=59 Score=16.57 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=9.7
Q ss_pred CCccEEecCCccCCC
Q 012414 429 SELLFLKLGLCENIS 443 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~ 443 (464)
++|+.|++++| +++
T Consensus 2 ~~L~~L~vs~N-~Lt 15 (26)
T smart00364 2 PSLKELNVSNN-QLT 15 (26)
T ss_pred cccceeecCCC-ccc
Confidence 46788888887 443
Done!