Query 012414
Match_columns 464
No_of_seqs 354 out of 3321
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 08:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 1.2E-43 4E-48 347.2 35.5 443 3-460 2-536 (594)
2 3ogk_B Coronatine-insensitive 100.0 9E-42 3.1E-46 333.6 33.3 441 8-463 14-521 (592)
3 2p1m_B Transport inhibitor res 100.0 8.1E-33 2.8E-37 270.5 36.2 367 57-439 97-541 (594)
4 3ogk_B Coronatine-insensitive 100.0 6.8E-32 2.3E-36 263.8 32.1 390 56-461 103-544 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-28 4.1E-33 233.2 37.0 386 58-459 21-459 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-28 7.5E-33 231.5 34.3 380 65-463 3-435 (461)
7 2ast_B S-phase kinase-associat 100.0 7.5E-29 2.6E-33 224.4 21.2 289 4-329 6-299 (336)
8 2ast_B S-phase kinase-associat 99.9 2.8E-22 9.6E-27 181.2 23.0 249 200-458 48-299 (336)
9 4fmz_A Internalin; leucine ric 99.9 1.3E-22 4.4E-27 184.3 19.9 211 94-335 42-252 (347)
10 3t6q_A CD180 antigen; protein- 99.9 2E-25 6.8E-30 218.5 -1.7 255 198-464 300-556 (606)
11 3t6q_A CD180 antigen; protein- 99.9 8.5E-26 2.9E-30 221.1 -5.0 84 376-464 423-509 (606)
12 3rgz_A Protein brassinosteroid 99.9 1.3E-25 4.6E-30 224.5 -5.6 253 198-464 293-547 (768)
13 4fmz_A Internalin; leucine ric 99.9 1.3E-21 4.3E-26 177.8 20.7 299 121-463 43-341 (347)
14 1o6v_A Internalin A; bacterial 99.9 2.3E-21 7.8E-26 183.0 23.1 338 65-463 46-383 (466)
15 3rgz_A Protein brassinosteroid 99.9 1.7E-25 5.9E-30 223.7 -9.0 275 172-464 199-499 (768)
16 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-23 6.5E-28 202.0 5.1 137 65-213 26-162 (549)
17 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-24 5.2E-29 212.2 -4.1 112 61-183 52-163 (606)
18 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-22 8E-27 192.9 9.6 128 65-211 21-150 (520)
19 2z63_A TOLL-like receptor 4, v 99.9 1E-24 3.6E-29 212.0 -6.9 180 274-464 346-527 (570)
20 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-24 5.3E-29 212.2 -6.0 373 60-463 75-553 (606)
21 2ca6_A RAN GTPase-activating p 99.9 1.7E-19 5.8E-24 166.0 26.7 207 248-462 93-337 (386)
22 1o6v_A Internalin A; bacterial 99.9 2.8E-20 9.7E-25 175.5 21.8 318 95-464 45-362 (466)
23 3v47_A TOLL-like receptor 5B a 99.9 1.2E-22 3.9E-27 191.8 4.5 355 65-441 30-407 (455)
24 3v47_A TOLL-like receptor 5B a 99.9 2.8E-23 9.5E-28 196.0 -0.4 354 94-464 28-404 (455)
25 1ziw_A TOLL-like receptor 3; i 99.8 1.5E-22 5.2E-27 200.8 0.0 57 276-335 249-305 (680)
26 4eco_A Uncharacterized protein 99.8 5.1E-23 1.7E-27 201.2 -4.5 344 93-464 203-596 (636)
27 2ca6_A RAN GTPase-activating p 99.8 1.6E-18 5.4E-23 159.5 25.4 189 269-464 88-312 (386)
28 2z81_A CD282 antigen, TOLL-lik 99.8 1.2E-21 4.1E-26 189.5 4.0 183 94-286 24-207 (549)
29 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-20 4.5E-25 180.8 11.1 360 58-447 38-486 (520)
30 1ziw_A TOLL-like receptor 3; i 99.8 3.2E-22 1.1E-26 198.4 -0.9 328 123-464 249-618 (680)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-21 3.9E-26 189.7 2.2 61 299-361 351-412 (562)
32 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-22 3.8E-27 205.6 -7.5 375 65-463 24-459 (844)
33 3o6n_A APL1; leucine-rich repe 99.8 5.6E-21 1.9E-25 176.2 4.4 324 94-457 43-366 (390)
34 4ecn_A Leucine-rich repeat pro 99.8 3.9E-21 1.3E-25 191.1 3.5 342 93-464 445-836 (876)
35 2z63_A TOLL-like receptor 4, v 99.8 1.6E-22 5.4E-27 196.6 -7.0 186 247-441 345-530 (570)
36 2id5_A Lingo-1, leucine rich r 99.8 6.1E-22 2.1E-26 187.8 -3.2 302 94-440 30-331 (477)
37 2id5_A Lingo-1, leucine rich r 99.8 5E-22 1.7E-26 188.4 -5.0 298 122-464 32-329 (477)
38 4eco_A Uncharacterized protein 99.8 3E-22 1E-26 195.8 -7.0 323 118-464 202-575 (636)
39 3o6n_A APL1; leucine-rich repe 99.8 3.8E-21 1.3E-25 177.3 -1.2 306 120-464 43-348 (390)
40 3j0a_A TOLL-like receptor 5; m 99.8 5.4E-22 1.8E-26 200.6 -8.8 379 61-464 44-489 (844)
41 3bz5_A Internalin-J, INLJ; leu 99.8 3.4E-19 1.1E-23 166.7 9.4 307 63-444 40-353 (457)
42 4ecn_A Leucine-rich repeat pro 99.8 1.6E-20 5.3E-25 186.9 0.1 323 118-464 444-815 (876)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.6E-20 1.9E-24 177.8 3.4 167 272-450 350-518 (562)
44 3bz5_A Internalin-J, INLJ; leu 99.8 4.9E-19 1.7E-23 165.6 8.9 302 94-464 40-348 (457)
45 3oja_B Anopheles plasmodium-re 99.8 7.1E-20 2.4E-24 178.0 3.1 319 94-452 49-367 (597)
46 3oja_B Anopheles plasmodium-re 99.8 3.3E-20 1.1E-24 180.3 -0.6 306 120-464 49-354 (597)
47 3goz_A Leucine-rich repeat-con 99.7 1.8E-16 6.2E-21 144.2 18.3 14 199-212 80-93 (362)
48 3goz_A Leucine-rich repeat-con 99.7 3.8E-16 1.3E-20 142.1 20.3 257 179-445 4-299 (362)
49 4g8a_A TOLL-like receptor 4; l 99.7 1.3E-19 4.5E-24 178.6 -5.6 133 66-211 53-185 (635)
50 2z80_A TOLL-like receptor 2, v 99.6 2.9E-17 1E-21 149.1 1.8 260 147-444 52-316 (353)
51 3o53_A Protein LRIM1, AGAP0063 99.6 6.9E-17 2.4E-21 144.1 3.5 151 300-462 119-269 (317)
52 1xku_A Decorin; proteoglycan, 99.6 1.8E-17 6.1E-22 149.1 -0.6 270 122-439 52-329 (330)
53 4g8a_A TOLL-like receptor 4; l 99.6 1.6E-17 5.4E-22 163.7 -2.9 113 60-183 71-183 (635)
54 1xku_A Decorin; proteoglycan, 99.6 2.8E-17 9.7E-22 147.8 -1.5 247 198-464 75-328 (330)
55 2z66_A Variable lymphocyte rec 99.6 7.4E-18 2.5E-22 149.9 -5.5 170 273-450 99-269 (306)
56 2ft3_A Biglycan; proteoglycan, 99.6 6.6E-18 2.3E-22 152.0 -7.4 269 122-439 54-330 (332)
57 3e4g_A ATP synthase subunit S, 99.6 1.3E-15 4.3E-20 119.5 6.3 106 352-459 61-171 (176)
58 2z80_A TOLL-like receptor 2, v 99.6 1.8E-16 6.1E-21 143.9 1.4 62 197-259 122-184 (353)
59 1ogq_A PGIP-2, polygalacturona 99.6 4.9E-18 1.7E-22 151.1 -10.4 250 173-440 50-302 (313)
60 3o53_A Protein LRIM1, AGAP0063 99.6 7.7E-17 2.6E-21 143.8 -3.8 79 144-233 31-109 (317)
61 1jl5_A Outer protein YOPM; leu 99.5 4.8E-15 1.6E-19 138.5 7.1 114 96-233 91-205 (454)
62 3zyj_A Leucine-rich repeat-con 99.5 3.5E-16 1.2E-20 146.4 -0.9 131 197-335 134-264 (440)
63 3zyi_A Leucine-rich repeat-con 99.5 4.1E-16 1.4E-20 146.4 -0.6 225 123-362 76-300 (452)
64 2ft3_A Biglycan; proteoglycan, 99.5 2.6E-17 9.1E-22 148.0 -8.8 245 198-464 77-329 (332)
65 3un9_A NLR family member X1; l 99.5 3.8E-13 1.3E-17 121.8 17.8 189 248-444 71-284 (372)
66 3oja_A Leucine-rich immune mol 99.5 6.5E-16 2.2E-20 145.8 -0.5 235 200-462 35-269 (487)
67 3zyi_A Leucine-rich repeat-con 99.5 6.9E-16 2.4E-20 144.9 -1.6 229 173-442 75-303 (452)
68 3zyj_A Leucine-rich repeat-con 99.5 4.9E-16 1.7E-20 145.4 -2.9 230 173-443 64-293 (440)
69 1wwl_A Monocyte differentiatio 99.5 9.3E-17 3.2E-21 142.9 -7.8 251 172-443 42-309 (312)
70 2z66_A Variable lymphocyte rec 99.5 8.5E-17 2.9E-21 143.0 -8.4 87 298-389 172-259 (306)
71 1ogq_A PGIP-2, polygalacturona 99.5 8.4E-17 2.9E-21 143.1 -8.4 131 94-232 74-206 (313)
72 1ozn_A Reticulon 4 receptor; N 99.5 1.8E-15 6E-20 133.0 -0.4 207 199-442 32-238 (285)
73 1jl5_A Outer protein YOPM; leu 99.5 3.7E-14 1.3E-18 132.5 7.5 303 65-443 91-409 (454)
74 3un9_A NLR family member X1; l 99.5 8.7E-13 3E-17 119.4 16.1 172 274-452 71-261 (372)
75 1wwl_A Monocyte differentiatio 99.5 1.2E-15 4.1E-20 135.7 -3.0 207 197-419 93-310 (312)
76 3g06_A SSPH2 (leucine-rich rep 99.5 4.8E-14 1.6E-18 135.9 7.7 266 96-426 40-305 (622)
77 1ozn_A Reticulon 4 receptor; N 99.5 5.9E-15 2E-19 129.6 1.2 35 198-232 104-138 (285)
78 4fcg_A Uncharacterized protein 99.4 1.7E-15 5.7E-20 135.5 -4.6 232 172-439 80-311 (328)
79 3e4g_A ATP synthase subunit S, 99.4 1.4E-13 4.7E-18 108.0 6.3 104 327-433 62-171 (176)
80 3oja_A Leucine-rich immune mol 99.4 5.4E-15 1.9E-19 139.5 -2.8 34 122-156 34-67 (487)
81 3g06_A SSPH2 (leucine-rich rep 99.4 2.5E-14 8.4E-19 137.9 1.6 265 122-450 40-304 (622)
82 4fcg_A Uncharacterized protein 99.4 5.8E-15 2E-19 132.0 -4.3 59 324-386 251-309 (328)
83 1h6u_A Internalin H; cell adhe 99.4 2.1E-12 7.1E-17 114.4 12.1 187 198-413 40-226 (308)
84 1h6u_A Internalin H; cell adhe 99.4 1.3E-12 4.5E-17 115.7 9.6 193 220-443 38-230 (308)
85 4glp_A Monocyte differentiatio 99.4 5.7E-14 2E-18 124.8 0.6 231 172-444 63-308 (310)
86 4glp_A Monocyte differentiatio 99.3 1.2E-13 4.2E-18 122.6 0.5 37 197-233 143-179 (310)
87 2z62_A TOLL-like receptor 4, v 99.3 9.3E-14 3.2E-18 121.3 -3.6 203 200-440 29-235 (276)
88 3rfs_A Internalin B, repeat mo 99.3 1.2E-12 4.1E-17 113.8 2.3 86 350-440 131-216 (272)
89 4ezg_A Putative uncharacterize 99.3 2.4E-12 8.1E-17 106.0 3.9 149 274-439 43-191 (197)
90 2o6q_A Variable lymphocyte rec 99.2 4.1E-13 1.4E-17 116.7 -2.4 182 248-441 36-217 (270)
91 2z62_A TOLL-like receptor 4, v 99.2 1.2E-12 4.2E-17 114.2 0.3 12 350-361 222-233 (276)
92 4ezg_A Putative uncharacterize 99.2 7.1E-12 2.4E-16 103.1 4.3 147 300-463 43-189 (197)
93 1h6t_A Internalin B; cell adhe 99.2 3.6E-11 1.2E-15 105.4 8.2 170 248-444 45-214 (291)
94 2o6q_A Variable lymphocyte rec 99.2 3.4E-12 1.2E-16 110.9 0.5 36 197-232 107-142 (270)
95 3rfs_A Internalin B, repeat mo 99.1 5.8E-12 2E-16 109.5 1.0 156 297-464 59-214 (272)
96 2ra8_A Uncharacterized protein 99.1 3.7E-10 1.3E-14 101.2 11.4 161 269-439 166-340 (362)
97 1m9s_A Internalin B; cell inva 99.1 7.8E-11 2.7E-15 113.4 7.0 170 248-444 42-211 (605)
98 1h6t_A Internalin B; cell adhe 99.1 1.6E-10 5.4E-15 101.3 8.2 175 220-422 43-217 (291)
99 1p9a_G Platelet glycoprotein I 99.1 5.6E-12 1.9E-16 110.4 -1.2 208 219-447 6-213 (290)
100 2xwt_C Thyrotropin receptor; s 99.1 8.4E-13 2.9E-17 112.5 -6.9 11 96-106 31-41 (239)
101 2ra8_A Uncharacterized protein 99.1 3.3E-10 1.1E-14 101.6 9.2 152 294-454 165-331 (362)
102 2xwt_C Thyrotropin receptor; s 99.1 1.1E-12 3.8E-17 111.7 -6.6 9 148-156 32-40 (239)
103 1io0_A Tropomodulin; LRR prote 99.1 8.5E-09 2.9E-13 83.4 16.5 122 321-446 31-167 (185)
104 1io0_A Tropomodulin; LRR prote 99.1 5E-09 1.7E-13 84.7 14.7 119 343-464 27-160 (185)
105 3sb4_A Hypothetical leucine ri 99.1 6.8E-12 2.3E-16 112.4 -2.5 126 325-461 201-327 (329)
106 1m9s_A Internalin B; cell inva 99.1 3.4E-10 1.1E-14 109.0 8.9 176 219-422 39-214 (605)
107 1p9a_G Platelet glycoprotein I 99.0 1.4E-11 4.8E-16 107.9 -1.6 177 199-390 31-207 (290)
108 3m19_A Variable lymphocyte rec 99.0 3E-11 1E-15 103.7 -0.5 85 350-439 105-189 (251)
109 2je0_A Acidic leucine-rich nuc 99.0 2.5E-10 8.7E-15 89.2 3.8 107 350-464 40-149 (149)
110 2je0_A Acidic leucine-rich nuc 99.0 5E-10 1.7E-14 87.5 5.3 35 198-232 87-122 (149)
111 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 3.5E-10 1.2E-14 69.9 3.2 42 3-45 5-46 (53)
112 3m19_A Variable lymphocyte rec 98.9 4.4E-11 1.5E-15 102.6 -1.6 132 324-464 57-188 (251)
113 3sb4_A Hypothetical leucine ri 98.9 1.4E-11 4.7E-16 110.3 -5.7 292 121-436 24-328 (329)
114 1xeu_A Internalin C; cellular 98.9 8.6E-10 2.9E-14 95.0 4.7 144 273-439 39-182 (263)
115 2ell_A Acidic leucine-rich nuc 98.9 2E-10 6.9E-15 91.8 -0.8 108 324-439 47-157 (168)
116 1xeu_A Internalin C; cellular 98.8 3.5E-09 1.2E-13 91.2 5.0 170 222-420 18-187 (263)
117 2ell_A Acidic leucine-rich nuc 98.8 4.7E-10 1.6E-14 89.6 -0.4 62 197-259 93-157 (168)
118 1dce_A Protein (RAB geranylger 98.7 2.6E-10 8.8E-15 109.2 -4.9 154 294-462 402-567 (567)
119 2o6s_A Variable lymphocyte rec 98.7 9.8E-10 3.4E-14 91.2 -1.4 59 275-336 28-86 (208)
120 2xot_A Amphoterin-induced prot 98.7 1.2E-09 4.2E-14 99.0 -1.4 142 299-447 62-207 (361)
121 2v9t_B SLIT homolog 2 protein 98.7 1.7E-09 5.7E-14 90.4 -1.2 70 376-448 102-171 (220)
122 4ay9_X Follicle-stimulating ho 98.7 1.5E-10 5.1E-15 104.6 -8.5 225 200-439 31-256 (350)
123 4ay9_X Follicle-stimulating ho 98.6 1E-10 3.4E-15 105.7 -10.0 154 197-361 102-255 (350)
124 2xot_A Amphoterin-induced prot 98.6 2.4E-09 8.2E-14 97.0 -1.4 153 302-463 40-197 (361)
125 2v70_A SLIT-2, SLIT homolog 2 98.6 2.5E-09 8.5E-14 89.4 -1.5 87 350-441 79-165 (220)
126 1a9n_A U2A', U2A'; complex (nu 98.6 8.9E-09 3E-13 82.8 1.6 130 300-439 18-150 (176)
127 3e6j_A Variable lymphocyte rec 98.6 8.3E-09 2.8E-13 86.9 1.0 61 376-440 110-170 (229)
128 2v70_A SLIT-2, SLIT homolog 2 98.6 4.6E-09 1.6E-13 87.8 -0.8 132 95-232 31-162 (220)
129 1pgv_A TMD-1, tropomodulin TMD 98.6 1E-06 3.6E-11 70.4 12.6 123 315-439 30-167 (197)
130 2v9t_B SLIT homolog 2 protein 98.6 8.7E-09 3E-13 86.1 0.4 35 198-232 103-137 (220)
131 1dce_A Protein (RAB geranylger 98.5 3.5E-09 1.2E-13 101.3 -2.9 35 120-156 347-381 (567)
132 1a9n_A U2A', U2A'; complex (nu 98.5 3.2E-08 1.1E-12 79.5 3.1 39 297-335 109-149 (176)
133 3e6j_A Variable lymphocyte rec 98.5 1.9E-08 6.3E-13 84.7 1.4 58 96-156 40-97 (229)
134 1pgv_A TMD-1, tropomodulin TMD 98.5 2.2E-06 7.4E-11 68.6 13.2 127 289-418 29-170 (197)
135 1ds9_A Outer arm dynein; leuci 98.5 7.4E-09 2.5E-13 85.1 -1.9 107 296-413 43-149 (198)
136 2o6s_A Variable lymphocyte rec 98.5 2.6E-08 8.8E-13 82.6 0.8 33 200-232 29-61 (208)
137 4fs7_A Uncharacterized protein 98.5 1E-09 3.5E-14 100.8 -8.5 232 197-460 160-393 (394)
138 3cvr_A Invasion plasmid antige 98.4 8.2E-08 2.8E-12 91.5 3.9 192 198-426 58-251 (571)
139 3cvr_A Invasion plasmid antige 98.4 1.9E-07 6.6E-12 88.9 5.5 133 64-233 58-190 (571)
140 1ds9_A Outer arm dynein; leuci 98.4 5.7E-08 1.9E-12 79.7 1.6 58 198-259 92-150 (198)
141 4fs7_A Uncharacterized protein 98.2 5.4E-09 1.8E-13 96.0 -9.6 232 171-434 160-393 (394)
142 1w8a_A SLIT protein; signaling 98.2 9.3E-08 3.2E-12 77.9 -1.6 110 327-442 30-139 (192)
143 2wfh_A SLIT homolog 2 protein 98.1 5.3E-07 1.8E-11 73.4 1.3 91 350-445 52-142 (193)
144 2wfh_A SLIT homolog 2 protein 98.1 5.2E-07 1.8E-11 73.4 0.6 105 352-464 31-135 (193)
145 4fdw_A Leucine rich hypothetic 98.1 1.7E-08 5.8E-13 92.2 -9.3 35 402-439 321-355 (401)
146 1w8a_A SLIT protein; signaling 98.1 2.2E-07 7.7E-12 75.6 -2.3 107 352-464 29-135 (192)
147 4gt6_A Cell surface protein; l 98.0 4.5E-08 1.5E-12 89.9 -7.8 77 376-462 309-385 (394)
148 4fdw_A Leucine rich hypothetic 98.0 5.2E-08 1.8E-12 89.0 -7.4 82 350-439 298-380 (401)
149 2o6r_A Variable lymphocyte rec 98.0 6.2E-07 2.1E-11 72.0 -0.7 131 303-444 9-139 (177)
150 2o6r_A Variable lymphocyte rec 98.0 1.2E-06 4.3E-11 70.2 0.6 35 198-232 99-133 (177)
151 3l2o_B F-box only protein 4; s 97.9 1.6E-06 5.3E-11 72.8 0.7 42 5-47 3-44 (312)
152 2e31_A FBS1, F-box only protei 97.9 5.6E-06 1.9E-10 70.5 3.0 40 5-45 49-89 (297)
153 3rw6_A Nuclear RNA export fact 97.8 3.9E-05 1.3E-09 65.0 7.5 85 373-461 165-257 (267)
154 4b8c_D Glucose-repressible alc 97.7 2.4E-06 8.2E-11 84.5 -2.5 112 296-419 219-330 (727)
155 4b8c_D Glucose-repressible alc 97.6 1.1E-05 3.8E-10 79.8 1.5 109 197-315 222-330 (727)
156 4gt6_A Cell surface protein; l 97.6 8.4E-07 2.9E-11 81.3 -6.7 292 142-463 58-365 (394)
157 3g39_A Variable lymphocyte rec 97.5 1.7E-05 5.9E-10 62.9 0.3 86 351-441 29-114 (170)
158 2r9u_A Variable lymphocyte rec 97.5 2E-05 6.9E-10 62.7 0.3 85 352-441 33-117 (174)
159 3g39_A Variable lymphocyte rec 97.4 2.5E-05 8.6E-10 61.9 0.4 106 302-418 10-115 (170)
160 3v7d_B Cell division control p 97.4 3.4E-05 1.2E-09 72.3 1.0 40 4-44 12-51 (464)
161 2r9u_A Variable lymphocyte rec 97.4 3E-05 1E-09 61.7 0.4 104 304-418 15-118 (174)
162 3rw6_A Nuclear RNA export fact 97.3 0.00059 2E-08 57.8 7.8 85 246-332 167-257 (267)
163 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00013 4.3E-09 68.0 2.6 41 3-44 15-55 (445)
164 1p22_A F-BOX/WD-repeat protein 97.2 6E-05 2E-09 70.1 -0.1 42 3-45 7-52 (435)
165 4h09_A Hypothetical leucine ri 96.7 5.2E-06 1.8E-10 75.7 -11.1 105 324-438 238-342 (379)
166 2ifg_A High affinity nerve gro 96.6 0.0004 1.4E-08 62.3 0.3 98 348-450 27-124 (347)
167 2ifg_A High affinity nerve gro 96.5 0.00055 1.9E-08 61.4 0.8 88 324-418 29-116 (347)
168 4h09_A Hypothetical leucine ri 91.8 0.013 4.6E-07 53.0 -2.4 149 121-284 193-342 (379)
169 3rfe_A Platelet glycoprotein I 88.1 0.26 8.8E-06 36.4 2.4 39 405-444 32-70 (130)
170 3rfe_A Platelet glycoprotein I 68.2 2.6 9E-05 30.9 2.2 34 200-233 32-65 (130)
171 2lz0_A Uncharacterized protein 51.3 3.6 0.00012 28.4 0.3 34 402-437 18-51 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.2e-43 Score=347.22 Aligned_cols=443 Identities=20% Similarity=0.269 Sum_probs=261.1
Q ss_pred CCCccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhcccccceeecc--hhHHHHHHhhCCCceEEecccCCCCCc
Q 012414 3 GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLR--VEFLFILLDKYPYIKTLDLSVCPRVND 80 (464)
Q Consensus 3 ~~~~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~ 80 (464)
+.+.|+.||+||+.+||+||+..+|+.++++|||+|+++....+..+.... ......+..++++++++++++++.+.+
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 458899999999999999999789999999999999998544333333322 122445667778888888877654432
Q ss_pred ch-------------hhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhh-cC
Q 012414 81 GT-------------VSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS-FA 146 (464)
Q Consensus 81 ~~-------------~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~ 146 (464)
.. +..+ ....++|++|+++++ .+++..+..+...+++|++|++.+|..+++.....+. .+
T Consensus 82 ~~l~~~~~~~~~~~~l~~l-----~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 155 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAM-----SSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHH-----HHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHC
T ss_pred cccccccccchhhHHHHHH-----HHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhC
Confidence 21 1122 234566777777666 3556566666556667777777666545554444433 46
Q ss_pred CCCcEEecCCCC--CCCHHHHHHHHhcCCCccEEeccCCC-ccCHHHHHHHHhcCCCCcEEEccCc-ccCh---------
Q 012414 147 SGLKEVKLDKCL--NVTDVGLAKIAVRCVNLERLSLKWCM-EISDLGIDLLCKKCLDLKSLDVSYL-KLTN--------- 213 (464)
Q Consensus 147 ~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~--------- 213 (464)
++|++|++++|. ......+..+...+++|++|+++++. .++...+..+...+++|++|++++| .+.+
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 235 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC
Confidence 666666666542 11111122222334455555554442 2334444444444455555555443 1110
Q ss_pred -------------------------------------------hHHHH-hhcccCCceeEecCCCCCChhHHHHHHhcCC
Q 012414 214 -------------------------------------------DSFCS-IATLAKLESLVMVGCPCVDDTGLRFLESGCP 249 (464)
Q Consensus 214 -------------------------------------------~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 249 (464)
..+.. +..+++|++|++++|. +++..+..+...++
T Consensus 236 ~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCP 314 (594)
T ss_dssp TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCT
T ss_pred cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCC
Confidence 01111 1135666666666655 66655555555567
Q ss_pred CCceeecccccccChhHHHHHHhcCCCCcEEecc--------CCCccccHHHHHHHh-cCCCCcEEEcCCCCCChHHHHH
Q 012414 250 LLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAG--------HCFSELSTTLLHHMR-DLKNLEAITMDGARISDSCFQT 320 (464)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~--------~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~ 320 (464)
+|++|++.++ +.+.++..+...+++|++|++. .+.. ++......+. .+++|+.|.+..+.+++.++..
T Consensus 315 ~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~-l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 315 KLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA-LTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp TCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC-CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred CcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC-CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence 7777777664 4455555565566777777662 2333 4444444443 4677777766666677766666
Q ss_pred HHHhCCCCcEEecC-----CCCCCC----HHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCC
Q 012414 321 ISFNCKSLVEIGLS-----KCLGVT----NTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMI 391 (464)
Q Consensus 321 l~~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 391 (464)
+...+++|+.|+++ +|..++ +.++..++..+++|++|++++ .+++.++..+...+++|+.|++++|. +
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i 468 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-D 468 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-S
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-C
Confidence 66667777777776 455566 556666666677777777754 56777776666567777777777665 6
Q ss_pred cHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhh-cCCCccEEecCCccCCChHHHHHHHhcCccccee
Q 012414 392 TEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQGL 460 (464)
Q Consensus 392 ~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~-~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l 460 (464)
++.++..++..|++|+.|++++| .+++.++..+. .+++|+.|++++| .++..+++.+.+.+|+|+..
T Consensus 469 ~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 469 SDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp SHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHHHCTTEEEE
T ss_pred cHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHHhCCCCEEE
Confidence 77777666666777777777775 44666665444 3677777777777 45677777766667766543
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=9e-42 Score=333.63 Aligned_cols=441 Identities=19% Similarity=0.249 Sum_probs=264.7
Q ss_pred CCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhcccccceeecc--hhHHHHHHhhCCCceEEecccCCCCCcc----
Q 012414 8 DVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLR--VEFLFILLDKYPYIKTLDLSVCPRVNDG---- 81 (464)
Q Consensus 8 ~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~---- 81 (464)
..||+|++.+||+||+..+|+.++++|||+|+.+....+..+.... ...+..+..+++++++|++++|+.+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 3799999999999993399999999999999998655554444332 2346777888999999999887654322
Q ss_pred ---------hhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCC-CcEEecCCCCCCChHHHHHhh-cCCCCc
Q 012414 82 ---------TVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPL-LESVDLSYCCGFGDREAAALS-FASGLK 150 (464)
Q Consensus 82 ---------~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~-~~~~L~ 150 (464)
++..+ ....++|++|+++++ .++...+..+...+++ |++|++.+|...++.....+. .+++|+
T Consensus 94 ~~~~~~~~~~l~~l-----~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 167 (592)
T 3ogk_B 94 ENWGGYVTPWVTEI-----SNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIK 167 (592)
T ss_dssp TTSCCBCHHHHHHH-----HHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCS
T ss_pred ccccccchHHHHHH-----HhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCC
Confidence 12222 235678889998887 6777777777655666 888888887655655555443 688888
Q ss_pred EEecCCCCCCCH---HHHHHHHhcCCCccEEeccCCCc--cCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCC
Q 012414 151 EVKLDKCLNVTD---VGLAKIAVRCVNLERLSLKWCME--ISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKL 225 (464)
Q Consensus 151 ~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 225 (464)
+|++++|. +++ ..+..+...+++|++|+++++.. +....+..+...+++|+.|+++++.+.. ....+..+++|
T Consensus 168 ~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L 245 (592)
T 3ogk_B 168 TLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANL 245 (592)
T ss_dssp EEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTC
T ss_pred EEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHH
Confidence 88888753 322 22556666688888888876632 2456667777778888888888875543 22334445555
Q ss_pred ceeEecCCCC------------------------CChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEe
Q 012414 226 ESLVMVGCPC------------------------VDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLD 281 (464)
Q Consensus 226 ~~L~l~~~~~------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (464)
++|.+.++.. .....+..+...+++|++|++++|. +.+..+..++..+++|++|+
T Consensus 246 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEE
T ss_pred HhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEe
Confidence 5555542110 0111222223335566666666554 55555545555566666666
Q ss_pred ccCCCccccHHHHHHH-hcCCCCcEEEcCC-----------CCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012414 282 AGHCFSELSTTLLHHM-RDLKNLEAITMDG-----------ARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVS 349 (464)
Q Consensus 282 l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~-----------~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 349 (464)
+.++ +.+.....+ ..+++|+.|++++ +.+++.++..+...+++|++|++ .|..+++..+..+..
T Consensus 325 L~~~---~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 325 TRNV---IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGT 400 (592)
T ss_dssp EEGG---GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHH
T ss_pred ccCc---cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHh
Confidence 5522 333332222 3455666666652 34555555555555666666666 334555555555554
Q ss_pred cCCCCcEEeccC---CCCCCh----HHHHHHHhcCCCCcEEeccCCC-CCcHHHHHHHHhcCCCccEEecCCCCCCChHH
Q 012414 350 GCVNLKTIDLTC---CHSITD----DAISAIADSCRGLVCLKIESCN-MITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG 421 (464)
Q Consensus 350 ~~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~ 421 (464)
.+++|++|++++ |+.+++ .++..+...+++|+.|+++.|. .+++.++..+...+++|+.|++++| .+++.+
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~ 479 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEG 479 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHH
Confidence 455666666642 334443 3444444455666666665443 2455555555555566666666553 455555
Q ss_pred HHHh-hcCCCccEEecCCccCCChHHHHHHHhcCcccceeeec
Q 012414 422 LEYL-SRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY 463 (464)
Q Consensus 422 ~~~l-~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~ 463 (464)
+..+ ..+++|+.|++++| .+++.++..++..+|+|+.|+++
T Consensus 480 ~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp HHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEE
T ss_pred HHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECc
Confidence 4443 24566666666666 35555555555556666666554
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=8.1e-33 Score=270.51 Aligned_cols=367 Identities=20% Similarity=0.307 Sum_probs=287.4
Q ss_pred HHHHHhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCC
Q 012414 57 LFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFG 136 (464)
Q Consensus 57 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 136 (464)
+..+...+++|++|+++++. +.+.....+ ....++|++|++.+|..++...+..+...|++|++|++++|. ++
T Consensus 97 l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l-----~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~ 169 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMV-VTDDCLELI-----AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VD 169 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCB-CCHHHHHHH-----HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EE
T ss_pred HHHHHHhCCCCCeEEeeCcE-EcHHHHHHH-----HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cC
Confidence 55667788999999999854 666666555 334679999999988777777788888889999999998875 33
Q ss_pred hHHHHHhh----cCCCCcEEecCCCC-CCCHHHHHHHHhcCCCccEEeccCCCccCH-----------------------
Q 012414 137 DREAAALS----FASGLKEVKLDKCL-NVTDVGLAKIAVRCVNLERLSLKWCMEISD----------------------- 188 (464)
Q Consensus 137 ~~~~~~l~----~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------------- 188 (464)
+.....+. .+++|++|+++++. .++...+..+...+++|++|++++|..+..
T Consensus 170 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 249 (594)
T 2p1m_B 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249 (594)
T ss_dssp CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCC
T ss_pred CcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCcc
Confidence 33322222 46788888888764 466677777776788888888877622111
Q ss_pred -----------------------------HHHHHHHhcCCCCcEEEccCcccChhHHHH-hhcccCCceeEecCCCCCCh
Q 012414 189 -----------------------------LGIDLLCKKCLDLKSLDVSYLKLTNDSFCS-IATLAKLESLVMVGCPCVDD 238 (464)
Q Consensus 189 -----------------------------~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~ 238 (464)
..+..+...+++|++|++++|.+++..+.. +..+++|++|++.+| +.+
T Consensus 250 ~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 250 RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred chhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 011111224678899999999888777666 456999999999986 667
Q ss_pred hHHHHHHhcCCCCceeec--------ccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHh-cCCCCcEEEcC
Q 012414 239 TGLRFLESGCPLLKTIFV--------SRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR-DLKNLEAITMD 309 (464)
Q Consensus 239 ~~~~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~ 309 (464)
.++..+...+++|++|++ .++..+++.++..+...+++|++|.+..+. ++......+. .+++|+.|+++
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~--l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ--MTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC--CCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC--cCHHHHHHHHhhCCCcceeEee
Confidence 778888777999999999 345678888888888889999999765544 6666666665 69999999999
Q ss_pred --C----CCCC----hHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCC
Q 012414 310 --G----ARIS----DSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (464)
Q Consensus 310 --~----~~~~----~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 379 (464)
+ +.++ +.++..+...+++|+.|++++ .+++.++..+...+++|+.|++++| .+++.++..+...+++
T Consensus 406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDS 482 (594)
T ss_dssp ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTT
T ss_pred cccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCC
Confidence 3 4466 678888888999999999976 6899888888877999999999986 5899999888778999
Q ss_pred CcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhh-cCCCccEEecCCc
Q 012414 380 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLS-RCSELLFLKLGLC 439 (464)
Q Consensus 380 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~-~~~~L~~L~l~~~ 439 (464)
|+.|++++|+ +++.++..++..+++|+.|++++| .+++.++..+. .+|+|+...+..+
T Consensus 483 L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 483 LRKLEIRDCP-FGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp CCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred cCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHHhCCCCEEEEecCC
Confidence 9999999998 588888888888999999999998 56889998884 6899988777655
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=6.8e-32 Score=263.75 Aligned_cols=390 Identities=16% Similarity=0.209 Sum_probs=309.5
Q ss_pred HHHHHHhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCC
Q 012414 56 FLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGF 135 (464)
Q Consensus 56 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 135 (464)
.+..+...+++|++|+++++ .+.+.....+. .....+|++|++.+|..+....+..+...|++|++|+++++. +
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~----~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~ 176 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRM-IVSDLDLDRLA----KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-F 176 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESC-BCCHHHHHHHH----HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-E
T ss_pred HHHHHHhhCCCCCeEEeecc-EecHHHHHHHH----HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-c
Confidence 46677779999999999986 57666665552 222345999999998777788888888899999999999874 3
Q ss_pred ChH----HHHHhhcCCCCcEEecCCCCC--CCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCc
Q 012414 136 GDR----EAAALSFASGLKEVKLDKCLN--VTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL 209 (464)
Q Consensus 136 ~~~----~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 209 (464)
++. .......+++|++|+++++.- +....+..+...+++|++|+++++ .+.. +......+++|++|+++..
T Consensus 177 ~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~--l~~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILE--LVGFFKAAANLEEFCGGSL 253 (592)
T ss_dssp ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGG--GHHHHHHCTTCCEEEECBC
T ss_pred cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHH--HHHHHhhhhHHHhhccccc
Confidence 222 223455689999999987321 346778888888999999999987 3332 3345557888888888632
Q ss_pred cc-------------------------ChhHH-HHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccC
Q 012414 210 KL-------------------------TNDSF-CSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVS 263 (464)
Q Consensus 210 ~~-------------------------~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 263 (464)
.. ....+ ..+..+++|++|++++|. +.+..+..+...+++|++|++.+ .+.
T Consensus 254 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~ 330 (592)
T 3ogk_B 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIG 330 (592)
T ss_dssp CCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGH
T ss_pred ccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccC
Confidence 10 11112 224458899999999976 88888777777799999999983 577
Q ss_pred hhHHHHHHhcCCCCcEEeccC----------CCccccHHHHHH-HhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEe
Q 012414 264 STGLISVIRGHSGLLQLDAGH----------CFSELSTTLLHH-MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIG 332 (464)
Q Consensus 264 ~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 332 (464)
+.++..+...+++|++|++.+ |.. ++...... ...+++|+.|++..+.+++..+..+...+++|+.|+
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL-VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC-CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCc-cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence 788888888899999999995 655 66655444 557999999999888899999999987899999999
Q ss_pred cC---CCCCCCH----HHHHHHHhcCCCCcEEeccCCC-CCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCC
Q 012414 333 LS---KCLGVTN----TGITQLVSGCVNLKTIDLTCCH-SITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCL 404 (464)
Q Consensus 333 l~---~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 404 (464)
++ .|+.+++ .++..+...+++|++|++++|. .+++..+..+...+++|+.|++++|. +++.++..+...|+
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCP 488 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCc
Confidence 97 3456665 4677777789999999998765 48999999998889999999999876 89999999988999
Q ss_pred CccEEecCCCCCCChHHHHHhh-cCCCccEEecCCccCCChHHHHHHHhcCcccceee
Q 012414 405 RLEEIDLTDCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLD 461 (464)
Q Consensus 405 ~L~~L~l~~c~~i~~~~~~~l~-~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~ 461 (464)
+|++|++++|. +++.++..+. .+++|+.|++++| ++++.+++.+++.+|.+....
T Consensus 489 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 489 NLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp TCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC-BCCTTCTTGGGGCCTTEEEEE
T ss_pred ccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC-cCCHHHHHHHHHhCCCcEEEE
Confidence 99999999974 8888877765 6999999999999 699999998988888876543
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-28 Score=233.23 Aligned_cols=386 Identities=18% Similarity=0.254 Sum_probs=175.6
Q ss_pred HHHHhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCC----CCcEEecCCCC
Q 012414 58 FILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACP----LLESVDLSYCC 133 (464)
Q Consensus 58 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~ 133 (464)
..++..+++++.|++++|. +.+.....++. .....++|++|+++++ .+....+..+...++ +|++|+++++.
T Consensus 21 ~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~--~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 21 AELLPLLQQCQVVRLDDCG-LTEARCKDISS--ALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96 (461)
T ss_dssp HHHHHHHTTCSEEEEESSC-CCHHHHHHHHH--HHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred HHHHhhcCCccEEEccCCC-CCHHHHHHHHH--HHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCC
Confidence 3344455555555555533 44333222211 1223355555555554 344444444444444 45555555543
Q ss_pred CCChHH----HHHhhcCCCCcEEecCCCCCCCHHHHHHHHhc----CCCccEEeccCCCccCHHHH---HHHHhcCCCCc
Q 012414 134 GFGDRE----AAALSFASGLKEVKLDKCLNVTDVGLAKIAVR----CVNLERLSLKWCMEISDLGI---DLLCKKCLDLK 202 (464)
Q Consensus 134 ~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~ 202 (464)
+++.+ ...+..+++|++|++++ ..+++.++..+... .++|++|++++| .+++.+. ......+++|+
T Consensus 97 -i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 97 -LTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp -CBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCC
T ss_pred -CCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCC
Confidence 34322 23344455555555555 23444444443332 234555555555 3333222 22223455555
Q ss_pred EEEccCcccChhHHHHhhc-----ccCCceeEecCCCCCChhHH---HHHHhcCCCCceeecccccccChhHHHHHHh--
Q 012414 203 SLDVSYLKLTNDSFCSIAT-----LAKLESLVMVGCPCVDDTGL---RFLESGCPLLKTIFVSRCKFVSSTGLISVIR-- 272 (464)
Q Consensus 203 ~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-- 272 (464)
+|++++|.+++.....+.. .++|++|+++++. +++.+. ......+++|++|+++++. +.+.++..+..
T Consensus 174 ~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGL 251 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHH
T ss_pred EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHH
Confidence 5555555554444443332 3355555555542 333321 1112234555555555542 33333332222
Q ss_pred --cCCCCcEEeccCCCccccHH----HHHHHhcCCCCcEEEcCCCCCChHHHHHHHHh----CCCCcEEecCCCCCCCHH
Q 012414 273 --GHSGLLQLDAGHCFSELSTT----LLHHMRDLKNLEAITMDGARISDSCFQTISFN----CKSLVEIGLSKCLGVTNT 342 (464)
Q Consensus 273 --~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~ 342 (464)
.+++|++|++++|. ++.. ....+..+++|+.|++++|.+.+.+...+... .++|+.|++++|. +++.
T Consensus 252 ~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 328 (461)
T 1z7x_W 252 LHPSSRLRTLWIWECG--ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAA 328 (461)
T ss_dssp TSTTCCCCEEECTTSC--CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGG
T ss_pred hcCCCCceEEECcCCC--CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchH
Confidence 24555555555554 3332 23334445555555555555555444443322 1355555555542 4333
Q ss_pred HH---HHHHhcCCCCcEEeccCCCCCChHHHHHHHhc----CCCCcEEeccCCCCCcHHHHHHHH---hcCCCccEEecC
Q 012414 343 GI---TQLVSGCVNLKTIDLTCCHSITDDAISAIADS----CRGLVCLKIESCNMITEKGLYQLG---SFCLRLEEIDLT 412 (464)
Q Consensus 343 ~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~ 412 (464)
+. ...+..+++|++|+++++ .+++.+...+... .++|+.|++++|. +++.+...+. ..+++|++|+++
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred HHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECC
Confidence 22 222234455555555553 4555444443322 3455555555553 5544433322 235555555555
Q ss_pred CCCCCChHHHHHhhc-----CCCccEEecCCccCCC---hHHHHHHHhcCcccce
Q 012414 413 DCNGVNDKGLEYLSR-----CSELLFLKLGLCENIS---DKGLFYIASNCLRIQG 459 (464)
Q Consensus 413 ~c~~i~~~~~~~l~~-----~~~L~~L~l~~~~~i~---~~~~~~~~~~~~~L~~ 459 (464)
+ +.+++.++..+.. ..+|+.|.+.++ ... ...++.+.+..|+|+.
T Consensus 407 ~-N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~-~~~~~~~~~l~~l~~~~p~l~i 459 (461)
T 1z7x_W 407 N-NCLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALEKDKPSLRV 459 (461)
T ss_dssp S-SSCCHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHHHHHCTTSEE
T ss_pred C-CCCCHHHHHHHHHHhccCCcchhheeeccc-ccCHHHHHHHHHHhccCCCcEe
Confidence 5 3555555444431 224555555444 221 2334444445555543
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.2e-28 Score=231.46 Aligned_cols=380 Identities=21% Similarity=0.294 Sum_probs=287.2
Q ss_pred CCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHH---HHHHHhhCCCCcEEecCCCCCCChHHHH
Q 012414 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRG---LEMLARACPLLESVDLSYCCGFGDREAA 141 (464)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 141 (464)
+.+++|++++ ..+.+..+..+ ....+++++|+++++ .+.... +......+++|++|+++++. +++....
T Consensus 3 ~~l~~L~Ls~-~~l~~~~~~~~-----~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQC-EELSDARWAEL-----LPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVH 74 (461)
T ss_dssp EEEEEEEEES-CCCCHHHHHHH-----HHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHH
T ss_pred ccceehhhhh-cccCchhHHHH-----HhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHH
Confidence 5789999987 55776666554 456789999999998 466553 44555678999999999865 6666665
Q ss_pred Hhhc-CC----CCcEEecCCCCCCCHHH---HHHHHhcCCCccEEeccCCCccCHHHHHHHHhc----CCCCcEEEccCc
Q 012414 142 ALSF-AS----GLKEVKLDKCLNVTDVG---LAKIAVRCVNLERLSLKWCMEISDLGIDLLCKK----CLDLKSLDVSYL 209 (464)
Q Consensus 142 ~l~~-~~----~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~ 209 (464)
.+.. ++ +|++|+++++ .+++.+ +......+++|++|+++++ .+++.++..+... .++|++|++++|
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 5543 44 7999999995 577644 3444456899999999998 5777777666543 467999999999
Q ss_pred ccChhHHH----HhhcccCCceeEecCCCCCChhHHHHHHh----cCCCCceeecccccccChhH---HHHHHhcCCCCc
Q 012414 210 KLTNDSFC----SIATLAKLESLVMVGCPCVDDTGLRFLES----GCPLLKTIFVSRCKFVSSTG---LISVIRGHSGLL 278 (464)
Q Consensus 210 ~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~ 278 (464)
.+++.... .+..+++|++|+++++. +.+.+...+.. ..++|++|++++|. ++..+ +...+..+++|+
T Consensus 153 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 153 SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCC
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCcc
Confidence 88876543 35568999999999865 77766665544 35699999999975 55543 455566789999
Q ss_pred EEeccCCCccccHHHHHHHh-----cCCCCcEEEcCCCCCChHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 012414 279 QLDAGHCFSELSTTLLHHMR-----DLKNLEAITMDGARISDSCFQTIS---FNCKSLVEIGLSKCLGVTNTGITQLVSG 350 (464)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (464)
+|+++++. +.......+. .+++|+.|++++|.+++.+...+. ..+++|++|+++++ .+.+.+...+...
T Consensus 231 ~L~Ls~n~--l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 231 ELALGSNK--LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCET 307 (461)
T ss_dssp EEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHH
T ss_pred EEeccCCc--CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHH
Confidence 99999986 5555443332 588999999999999988754443 46899999999986 5777766655432
Q ss_pred ----CCCCcEEeccCCCCCChHHHHH---HHhcCCCCcEEeccCCCCCcHHHHHHHHhc----CCCccEEecCCCCCCCh
Q 012414 351 ----CVNLKTIDLTCCHSITDDAISA---IADSCRGLVCLKIESCNMITEKGLYQLGSF----CLRLEEIDLTDCNGVND 419 (464)
Q Consensus 351 ----~~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~c~~i~~ 419 (464)
.++|++|++++| .+++.+... ....+++|++|++++|. +++.+...+... .++|+.|++++| .+++
T Consensus 308 l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~ 384 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSD 384 (461)
T ss_dssp HTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred hccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCCh
Confidence 369999999997 577654333 33467999999999985 888887776643 679999999995 8998
Q ss_pred HHHHH----hhcCCCccEEecCCccCCChHHHHHHHhcCcc----cceeeec
Q 012414 420 KGLEY----LSRCSELLFLKLGLCENISDKGLFYIASNCLR----IQGLDLY 463 (464)
Q Consensus 420 ~~~~~----l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~----L~~l~l~ 463 (464)
++... +..+++|++|++++| .+++.++..+.+.+|+ |+.|++.
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~ 435 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLY 435 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred hhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeec
Confidence 55544 446899999999999 8999999888776654 7777654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.96 E-value=7.5e-29 Score=224.43 Aligned_cols=289 Identities=20% Similarity=0.265 Sum_probs=175.5
Q ss_pred CCccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhcccccceeecchhHHHHHHhhCCCceEEecccCCCCCcchh
Q 012414 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTV 83 (464)
Q Consensus 4 ~~~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 83 (464)
+..|++||+|++.+||+||+ .+|+.+++.|||+|++++... ..++.++++++ .+.+..+
T Consensus 6 ~~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~-------------------~~~~~l~l~~~-~~~~~~~ 64 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDE-------------------SLWQTLDLTGK-NLHPDVT 64 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCS-------------------TTSSEEECTTC-BCCHHHH
T ss_pred cCChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCc-------------------hhheeeccccc-cCCHHHH
Confidence 46799999999999999999 999999999999999986432 22445555442 2222211
Q ss_pred hhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChH-HHHHhhcCCCCcEEecCCCCCCCH
Q 012414 84 SFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDR-EAAALSFASGLKEVKLDKCLNVTD 162 (464)
Q Consensus 84 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~ 162 (464)
..+ ..+.++.|++.++. +.... .. ...+++|++|+++++. +++. ....+..+++|++|+++++ .+++
T Consensus 65 ~~~-------~~~~l~~L~l~~n~-l~~~~-~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~ 132 (336)
T 2ast_B 65 GRL-------LSQGVIAFRCPRSF-MDQPL-AE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL-RLSD 132 (336)
T ss_dssp HHH-------HHTTCSEEECTTCE-ECSCC-CS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC-BCCH
T ss_pred Hhh-------hhccceEEEcCCcc-ccccc-hh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc-ccCH
Confidence 111 12455555555432 11000 00 1145566666666554 4433 2334455666666666663 4555
Q ss_pred HHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCc-ccChhHHH-Hhhccc-CCceeEecCCC-CCCh
Q 012414 163 VGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL-KLTNDSFC-SIATLA-KLESLVMVGCP-CVDD 238 (464)
Q Consensus 163 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~-~l~~~~-~L~~L~l~~~~-~~~~ 238 (464)
..+..+.. +++|++|++++|..+++.++..+...+++|++|++++| .+++..+. .+..++ +|++|+++++. .+++
T Consensus 133 ~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 133 PIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp HHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred HHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 55554444 66666666666655665555555556666666666666 66654333 345566 77777776654 3555
Q ss_pred hHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHH
Q 012414 239 TGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCF 318 (464)
Q Consensus 239 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 318 (464)
..+......+++|++|++++|..+++..+..+ ..+++|++|++++|.. ..+.....+.++++|+.|+++++ +++..+
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~ 288 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYD-IIPETLLELGEIPTLKTLQVFGI-VPDGTL 288 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTT-CCGGGGGGGGGCTTCCEEECTTS-SCTTCH
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCC-CCHHHHHHHhcCCCCCEEeccCc-cCHHHH
Confidence 55555555577777777777654554444433 4467788888877754 55555566777888888888888 777777
Q ss_pred HHHHHhCCCCc
Q 012414 319 QTISFNCKSLV 329 (464)
Q Consensus 319 ~~l~~~~~~L~ 329 (464)
..+...++.|+
T Consensus 289 ~~l~~~l~~L~ 299 (336)
T 2ast_B 289 QLLKEALPHLQ 299 (336)
T ss_dssp HHHHHHSTTSE
T ss_pred HHHHhhCcceE
Confidence 77765566555
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.8e-22 Score=181.23 Aligned_cols=249 Identities=17% Similarity=0.213 Sum_probs=161.8
Q ss_pred CCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcE
Q 012414 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (464)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (464)
.++.++++++.+.+..+..+. .++++.|++.++. +...... + ..+++|++|+++++. +...++...+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~-~~~l~~L~l~~n~-l~~~~~~-~-~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLL-SQGVIAFRCPRSF-MDQPLAE-H-FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHH-HTTCSEEECTTCE-ECSCCCS-C-CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCHHHHHhhh-hccceEEEcCCcc-ccccchh-h-ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCE
Confidence 355666665555432222111 1556666655432 1111000 1 125677777777654 555556666666777777
Q ss_pred EeccCCCccccHHHHHHHhcCCCCcEEEcCCC-CCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC-CCcEE
Q 012414 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGA-RISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCV-NLKTI 357 (464)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L 357 (464)
|+++++. +.......+..+++|+.|++++| .+++.++..+...+++|++|++++|..+++.++...+..++ +|++|
T Consensus 123 L~L~~~~--l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 123 LSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EECTTCB--CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EeCcCcc--cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 7777775 56666666777777777777777 57776666666677788888887765677766666666777 88888
Q ss_pred eccCCC-CCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEec
Q 012414 358 DLTCCH-SITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKL 436 (464)
Q Consensus 358 ~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l 436 (464)
++++|. .+++..+......+++|+.|++++|..+++.+...+. .+++|+.|++++|..+++.++..+..+++|+.|++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 887765 5676666666667788888888777656666555443 66788888888776777776666777888888888
Q ss_pred CCccCCChHHHHHHHhcCcccc
Q 012414 437 GLCENISDKGLFYIASNCLRIQ 458 (464)
Q Consensus 437 ~~~~~i~~~~~~~~~~~~~~L~ 458 (464)
++| +++.++..+.+.+|+|+
T Consensus 280 ~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 280 FGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp TTS--SCTTCHHHHHHHSTTSE
T ss_pred cCc--cCHHHHHHHHhhCcceE
Confidence 877 66666766665555544
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.3e-22 Score=184.27 Aligned_cols=211 Identities=16% Similarity=0.129 Sum_probs=95.9
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (464)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (464)
..+++++|++.++.-... .. ...+++|++|+++++. +++... +..+++|++|+++++ .++.. .. ...++
T Consensus 42 ~l~~L~~L~l~~~~i~~~---~~-~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n-~i~~~--~~-~~~l~ 110 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI---QG-IEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTN-KITDI--SA-LQNLT 110 (347)
T ss_dssp HHTTCSEEECCSSCCCCC---TT-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCCC--GG-GTTCT
T ss_pred hcccccEEEEeCCccccc---hh-hhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCC-cccCc--hH-HcCCC
Confidence 346777777776532111 11 2356777777777653 333222 556677777777663 33331 11 23366
Q ss_pred CccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCce
Q 012414 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (464)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (464)
+|++|+++++ .+..... ...+++|+.|++++|..... +..+..+++|++|+++++....... ...+++|++
T Consensus 111 ~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~ 181 (347)
T 4fmz_A 111 NLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYS 181 (347)
T ss_dssp TCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSE
T ss_pred cCCEEECcCC-cccCchh---hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh----hccCCCCCE
Confidence 6666666655 2322111 23455666666665521111 1224455555555555543211111 122555555
Q ss_pred eecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEec
Q 012414 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (464)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (464)
|+++++....... ...+++|+.++++++.. .... .+..+++|+.|++++|.+..... ...+++|+.|++
T Consensus 182 L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l--~~~~--~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l 250 (347)
T 4fmz_A 182 LSLNYNQIEDISP----LASLTSLHYFTAYVNQI--TDIT--PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEI 250 (347)
T ss_dssp EECTTSCCCCCGG----GGGCTTCCEEECCSSCC--CCCG--GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred EEccCCccccccc----ccCCCccceeecccCCC--CCCc--hhhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEEC
Confidence 5555543111111 23345555555554432 1110 03444555555555544333221 124444555555
Q ss_pred CC
Q 012414 334 SK 335 (464)
Q Consensus 334 ~~ 335 (464)
++
T Consensus 251 ~~ 252 (347)
T 4fmz_A 251 GT 252 (347)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2e-25 Score=218.49 Aligned_cols=255 Identities=19% Similarity=0.147 Sum_probs=122.9
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (464)
+++|+.|++++|.+.......+..+++|++|+++++..........+ ..+++|++|+++++...........+..+++|
T Consensus 300 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 378 (606)
T 3t6q_A 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378 (606)
T ss_dssp CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT-TTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh-hccCcCCEEECCCCccccccCcchhcccCCCC
Confidence 34444444444444333333344445555555544321111000001 12455555555543211111001122345566
Q ss_pred cEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEE
Q 012414 278 LQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTI 357 (464)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 357 (464)
++|+++++. +.......+..+++|+.|++++|.+...........+++|+.|+++++. +..... .....+++|++|
T Consensus 379 ~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L 454 (606)
T 3t6q_A 379 QSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE-QLFDGLPALQHL 454 (606)
T ss_dssp CEEECCSCS--CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCT-TTTTTCTTCCEE
T ss_pred CEEECCCCc--CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCH-HHHhCCCCCCEE
Confidence 666666554 2222333445566666666666654322211112255667777776643 322111 112356677777
Q ss_pred eccCCCCCChHHHH--HHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEe
Q 012414 358 DLTCCHSITDDAIS--AIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLK 435 (464)
Q Consensus 358 ~l~~~~~l~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~ 435 (464)
++++| .+++..+. .....+++|+.|++++|. ++......+ ..+++|+.|++++ +.++......+..+++| .|+
T Consensus 455 ~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 455 NLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAF-TSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp ECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEE
T ss_pred ECCCC-CCCccccccchhhccCCCccEEECCCCc-cCccChhhh-ccccCCCEEECCC-CccCcCChhHhCccccc-EEE
Confidence 77764 33321110 112256777777777764 333221222 3567777777777 47776666667777777 777
Q ss_pred cCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 436 LGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 436 l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+++| .++...... +..+++|+.|++++
T Consensus 530 L~~N-~l~~~~~~~-~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 530 LASN-HISIILPSL-LPILSQQRTINLRQ 556 (606)
T ss_dssp CCSS-CCCCCCGGG-HHHHHTSSEEECTT
T ss_pred CcCC-cccccCHhh-cccCCCCCEEeCCC
Confidence 7777 444322211 24457778877753
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=8.5e-26 Score=221.11 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=42.9
Q ss_pred cCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHH---HHhhcCCCccEEecCCccCCChHHHHHHHh
Q 012414 376 SCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGL---EYLSRCSELLFLKLGLCENISDKGLFYIAS 452 (464)
Q Consensus 376 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~ 452 (464)
.+++|+.|++++|. ++..... ....+++|+.|++++| .+++..+ ..+..+++|+.|++++| .++......+ .
T Consensus 423 ~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~ 497 (606)
T 3t6q_A 423 NLHLLKVLNLSHSL-LDISSEQ-LFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAF-T 497 (606)
T ss_dssp TCTTCCEEECTTCC-CBTTCTT-TTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTT-T
T ss_pred CcccCCEEECCCCc-cCCcCHH-HHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChhhh-c
Confidence 34556666665544 2221111 1224566666666663 4443221 23445667777777766 4443222222 4
Q ss_pred cCcccceeeecC
Q 012414 453 NCLRIQGLDLYK 464 (464)
Q Consensus 453 ~~~~L~~l~l~~ 464 (464)
.+++|+.|++++
T Consensus 498 ~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 498 SLKMMNHVDLSH 509 (606)
T ss_dssp TCTTCCEEECCS
T ss_pred cccCCCEEECCC
Confidence 567777777653
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.3e-25 Score=224.51 Aligned_cols=253 Identities=21% Similarity=0.183 Sum_probs=137.9
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (464)
+++|+.|++++|.+.......+..+++|++|+++++..........+. .+++|++|+++++.. .......+....++|
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~-~l~~L~~L~Ls~n~l-~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNEF-SGELPESLTNLSASL 370 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT-TCTTCCEEECCSSEE-EECCCTTHHHHTTTC
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh-cCCCCCEEeCcCCcc-CccccHHHHhhhcCC
Confidence 456666666666554444444556666666666654311111111222 266677777666532 110001111111266
Q ss_pred cEEeccCCCccccHHHHHHHhc--CCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCc
Q 012414 278 LQLDAGHCFSELSTTLLHHMRD--LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLK 355 (464)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 355 (464)
++|+++++. +.......+.. +++|+.|++++|.+.......+ ..+++|+.|+++++. +..... ..+..+++|+
T Consensus 371 ~~L~Ls~N~--l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~ 445 (768)
T 3rgz_A 371 LTLDLSSNN--FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNY-LSGTIP-SSLGSLSKLR 445 (768)
T ss_dssp SEEECCSSE--EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSE-EESCCC-GGGGGCTTCC
T ss_pred cEEEccCCC--cCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCc-ccCccc-HHHhcCCCCC
Confidence 666666654 22222222332 5677777777776543222222 367788888887753 322111 1224677888
Q ss_pred EEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEe
Q 012414 356 TIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLK 435 (464)
Q Consensus 356 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~ 435 (464)
.|++++| .++......+ ..+++|+.|++++|. ++.... .....+++|+.|++++ +.+++.....+..+++|+.|+
T Consensus 446 ~L~L~~n-~l~~~~p~~~-~~l~~L~~L~L~~N~-l~~~~p-~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 446 DLKLWLN-MLEGEIPQEL-MYVKTLETLILDFND-LTGEIP-SGLSNCTNLNWISLSN-NRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp EEECCSS-CCCSCCCGGG-GGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEE
T ss_pred EEECCCC-cccCcCCHHH-cCCCCceEEEecCCc-ccCcCC-HHHhcCCCCCEEEccC-CccCCcCChHHhcCCCCCEEE
Confidence 8888875 3332222222 257788888888865 332111 1233678888888888 467655556677788888888
Q ss_pred cCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 436 LGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 436 l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+++| .++..-. ..+..+++|+.|++++
T Consensus 521 L~~N-~l~~~~p-~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 521 LSNN-SFSGNIP-AELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCSS-CCEEECC-GGGGGCTTCCEEECCS
T ss_pred CCCC-cccCcCC-HHHcCCCCCCEEECCC
Confidence 8888 4442211 1235778888888763
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.3e-21 Score=177.75 Aligned_cols=299 Identities=17% Similarity=0.165 Sum_probs=120.9
Q ss_pred CCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCC
Q 012414 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD 200 (464)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 200 (464)
+++|++|++.++. +.+. ..+..+++|++|+++++ .++.... ...+++|++|+++++ .++.. .. ...+++
T Consensus 43 l~~L~~L~l~~~~-i~~~--~~~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~--~~-~~~l~~ 111 (347)
T 4fmz_A 43 LESITKLVVAGEK-VASI--QGIEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDI--SA-LQNLTN 111 (347)
T ss_dssp HTTCSEEECCSSC-CCCC--TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC--GG-GTTCTT
T ss_pred cccccEEEEeCCc-cccc--hhhhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCc--hH-HcCCCc
Confidence 3455555555432 1111 12444555555555542 2222111 223455555555544 22211 11 224455
Q ss_pred CcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEE
Q 012414 201 LKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL 280 (464)
Q Consensus 201 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 280 (464)
|++|++++|.+..... +..+++|++|+++++........ ...+++|++|+++++....... +..+++|++|
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L 182 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSL 182 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEE
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh----hccCCCCCEE
Confidence 5555555554332211 44455555555554432222111 1224555555555443211111 2334555555
Q ss_pred eccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEecc
Q 012414 281 DAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLT 360 (464)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (464)
+++++.. ... ..+..+++|+.++++++.+.+... ...+++|+.|++++|. +.+... ...+++|++|+++
T Consensus 183 ~l~~n~l--~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 183 SLNYNQI--EDI--SPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIG 251 (347)
T ss_dssp ECTTSCC--CCC--GGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECC
T ss_pred EccCCcc--ccc--ccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECC
Confidence 5554432 110 014444555555555554333221 1244455555555432 222111 2344555555555
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCcc
Q 012414 361 CCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCE 440 (464)
Q Consensus 361 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~ 440 (464)
+| .+++. .. ...+++|+.|++++|. ++.. .....+++|+.|++++| .+++.....+..+++|+.|++++|
T Consensus 252 ~n-~l~~~--~~-~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n- 321 (347)
T 4fmz_A 252 TN-QISDI--NA-VKDLTKLKMLNVGSNQ-ISDI---SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN- 321 (347)
T ss_dssp SS-CCCCC--GG-GTTCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-
T ss_pred CC-ccCCC--hh-HhcCCCcCEEEccCCc-cCCC---hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-
Confidence 43 22221 11 1234455555555443 2221 11224455555555552 444444444445555555555555
Q ss_pred CCChHHHHHHHhcCcccceeeec
Q 012414 441 NISDKGLFYIASNCLRIQGLDLY 463 (464)
Q Consensus 441 ~i~~~~~~~~~~~~~~L~~l~l~ 463 (464)
.++.... ...+++|+.|+++
T Consensus 322 ~l~~~~~---~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 322 HITDIRP---LASLSKMDSADFA 341 (347)
T ss_dssp SCCCCGG---GGGCTTCSEESSS
T ss_pred ccccccC---hhhhhccceeehh
Confidence 2332111 2344555555543
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.3e-21 Score=182.96 Aligned_cols=338 Identities=20% Similarity=0.207 Sum_probs=187.6
Q ss_pred CCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhh
Q 012414 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (464)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (464)
++++.|++.++. +.... . ....++|++|+++++. +.... . ...+++|++|+++++. +..... +.
T Consensus 46 ~~l~~L~l~~~~-i~~l~--~------~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~~--~~ 109 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKSID--G------VEYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMNNNQ-IADITP--LA 109 (466)
T ss_dssp HTCCEEECCSSC-CCCCT--T------GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCCCGG--GT
T ss_pred ccccEEecCCCC-CccCc--c------hhhhcCCCEEECCCCc-cCCch--h-hhccccCCEEECCCCc-cccChh--hc
Confidence 566777776643 22211 1 2345677777777663 22211 1 3467777777777654 222221 66
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccC
Q 012414 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (464)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 224 (464)
.+++|++|+++++ .++.... ...+++|++|+++++ .+... .. ...+++|+.|++.++ +.. ...+..+++
T Consensus 110 ~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~~-~~~--~~~~~~l~~ 178 (466)
T 1o6v_A 110 NLTNLTGLTLFNN-QITDIDP---LKNLTNLNRLELSSN-TISDI--SA-LSGLTSLQQLSFGNQ-VTD--LKPLANLTT 178 (466)
T ss_dssp TCTTCCEEECCSS-CCCCCGG---GTTCTTCSEEEEEEE-EECCC--GG-GTTCTTCSEEEEEES-CCC--CGGGTTCTT
T ss_pred CCCCCCEEECCCC-CCCCChH---HcCCCCCCEEECCCC-ccCCC--hh-hccCCcccEeecCCc-ccC--chhhccCCC
Confidence 6777777777764 3333221 344777777777765 33321 11 235677777777533 221 122556777
Q ss_pred CceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCc
Q 012414 225 LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304 (464)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 304 (464)
|+.|+++++. +.... .+ ..+++|++|+++++....... ...+++|++|+++++.. .. ...+..+++|+
T Consensus 179 L~~L~l~~n~-l~~~~--~l-~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l--~~--~~~l~~l~~L~ 246 (466)
T 1o6v_A 179 LERLDISSNK-VSDIS--VL-AKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQL--KD--IGTLASLTNLT 246 (466)
T ss_dssp CCEEECCSSC-CCCCG--GG-GGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC--CC--CGGGGGCTTCS
T ss_pred CCEEECcCCc-CCCCh--hh-ccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCc--cc--chhhhcCCCCC
Confidence 7777777654 33211 12 236777777777654222111 33467777777777653 21 13455677777
Q ss_pred EEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEe
Q 012414 305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLK 384 (464)
Q Consensus 305 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 384 (464)
.|++++|.+..... ...+++|+.|+++++. +.... . ...+++|+.|++++| .+++... ...+++|+.|+
T Consensus 247 ~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~ 315 (466)
T 1o6v_A 247 DLDLANNQISNLAP---LSGLTKLTELKLGANQ-ISNIS--P-LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLT 315 (466)
T ss_dssp EEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEE
T ss_pred EEECCCCccccchh---hhcCCCCCEEECCCCc-cCccc--c-ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEE
Confidence 77777776544322 2356777777777643 33221 1 345677777777765 3333211 23567777777
Q ss_pred ccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeec
Q 012414 385 IESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY 463 (464)
Q Consensus 385 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~ 463 (464)
+++|. +++... ...+++|+.|++++| .+++. ..+..+++|+.|++++| .+++... ...+++|+.|+++
T Consensus 316 L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 316 LYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSDV--SSLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLN 383 (466)
T ss_dssp CCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECC
T ss_pred CcCCc-CCCchh---hccCccCCEeECCCC-ccCCc--hhhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEecc
Confidence 77765 333221 236677777777774 55543 35566777777777777 4443221 3566777777665
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.7e-25 Score=223.73 Aligned_cols=275 Identities=19% Similarity=0.140 Sum_probs=139.6
Q ss_pred CCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCC
Q 012414 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (464)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (464)
+++|++|+++++ .+... +.. ...+++|++|++++|.++......+..+++|++|+++++........ ..+++|
T Consensus 199 l~~L~~L~Ls~n-~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L 271 (768)
T 3rgz_A 199 CVNLEFLDVSSN-NFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSL 271 (768)
T ss_dssp CTTCCEEECCSS-CCCSC-CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC----CCCTTC
T ss_pred CCcCCEEECcCC-cCCCC-Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc----cccCCC
Confidence 566666666655 22210 011 23566677777777666655556666677777777766431111000 024556
Q ss_pred ceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEE
Q 012414 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (464)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 331 (464)
++|+++++.. .......+...+++|++|+++++. +.......+..+++|+.|++++|.+...........+++|+.|
T Consensus 272 ~~L~L~~n~l-~~~ip~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 272 QYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp CEEECCSSEE-EESCCCCSCTTCTTCSEEECCSSE--EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CEEECcCCcc-CCccCHHHHhhcCcCCEEECcCCc--CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 6666655431 110000111123566666666654 2333334455666666666666654311111112255666666
Q ss_pred ecCCCCCCCH---HHHHHHH---------------------h--cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEec
Q 012414 332 GLSKCLGVTN---TGITQLV---------------------S--GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKI 385 (464)
Q Consensus 332 ~l~~~~~~~~---~~~~~~~---------------------~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 385 (464)
+++++. +.. ..+..+. . .+++|++|++++| .++...... ...+++|+.|++
T Consensus 349 ~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L 425 (768)
T 3rgz_A 349 DLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHL 425 (768)
T ss_dssp ECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEEC
T ss_pred eCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHH-HhcCCCCCEEEC
Confidence 666542 110 0111110 0 1345566666554 222111111 225677888888
Q ss_pred cCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 386 ESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 386 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
++|. ++..... ....+++|+.|++++| .++......+..+++|+.|++++| .++..... .+..+++|+.|++++
T Consensus 426 s~N~-l~~~~p~-~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~-~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 426 SFNY-LSGTIPS-SLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFN-DLTGEIPS-GLSNCTNLNWISLSN 499 (768)
T ss_dssp CSSE-EESCCCG-GGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCG-GGGGCTTCCEEECCS
T ss_pred cCCc-ccCcccH-HHhcCCCCCEEECCCC-cccCcCCHHHcCCCCceEEEecCC-cccCcCCH-HHhcCCCCCEEEccC
Confidence 7764 3321111 1236778888888884 666555566677888888888888 55432111 236788899888864
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1.9e-23 Score=202.05 Aligned_cols=137 Identities=22% Similarity=0.159 Sum_probs=63.1
Q ss_pred CCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhh
Q 012414 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (464)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (464)
+.++.|+++++. +....... ....++|++|+++++. +....... ...+++|++|+++++. ++......+.
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~------~~~l~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGD------LRACANLQVLILKSSR-INTIEGDA-FYSLGSLEHLDLSDNH-LSSLSSSWFG 95 (549)
T ss_dssp TTCCEEECCSSC-CCEECSST------TSSCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTTSC-CCSCCHHHHT
T ss_pred CCccEEECcCCc-cCccChhh------hhcCCcccEEECCCCC-cCccChhh-ccccccCCEEECCCCc-cCccCHHHhc
Confidence 456666666633 33222111 2344566666666652 22211111 2255666666666653 4444444456
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccCh
Q 012414 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTN 213 (464)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 213 (464)
.+++|++|+++++ .++..........+++|++|+++++..+...... ....+++|+.|++++|.+..
T Consensus 96 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 96 PLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCE
T ss_pred cCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccc
Confidence 6666666666653 3322111111223566666666654322211000 11234555555555554443
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.5e-24 Score=212.24 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=65.4
Q ss_pred HhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHH
Q 012414 61 LDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREA 140 (464)
Q Consensus 61 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 140 (464)
+..+++|+.|+++++ .+....... ....++|++|+++++. +..... .....+++|++|+++++. +.....
T Consensus 52 ~~~l~~L~~L~Ls~n-~l~~i~~~~------~~~l~~L~~L~Ls~n~-l~~~~p-~~~~~l~~L~~L~L~~n~-l~~~~~ 121 (606)
T 3vq2_A 52 FSNFSELQWLDLSRC-EIETIEDKA------WHGLHHLSNLILTGNP-IQSFSP-GSFSGLTSLENLVAVETK-LASLES 121 (606)
T ss_dssp TTTCTTCCEEECTTC-CCCEECTTT------TTTCTTCCEEECTTCC-CCCCCT-TSSTTCTTCCEEECTTSC-CCCSSS
T ss_pred ccCCccCcEEeCCCC-cccccCHHH------hhchhhcCEeECCCCc-ccccCh-hhcCCcccCCEEEccCCc-cccccc
Confidence 456677788887774 333322211 2455778888887763 222111 122367788888888764 333332
Q ss_pred HHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCC
Q 012414 141 AALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWC 183 (464)
Q Consensus 141 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (464)
..+..+++|++|+++++ .+....+......+++|++|+++++
T Consensus 122 ~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp SCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred cccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC
Confidence 34667888888888874 3432122222334888888888876
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=192.95 Aligned_cols=128 Identities=16% Similarity=0.089 Sum_probs=59.0
Q ss_pred CCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhh
Q 012414 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (464)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (464)
++++.|+++++. +.......+ ...++|++|+++++. +...... ....+++|++|+++++. ++... ..
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~------~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~lp--~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDI------LSLSKLRILIISHNR-IQYLDIS-VFKFNQELEYLDLSHNK-LVKIS--CH- 87 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHH------TTCTTCCEEECCSSC-CCEEEGG-GGTTCTTCCEEECCSSC-CCEEE--CC-
T ss_pred ccccEEECCCCc-ccccChhhc------cccccccEEecCCCc-cCCcChH-HhhcccCCCEEecCCCc-eeecC--cc-
Confidence 456666666533 332222112 334566666666652 2221111 12255666666666643 33211 11
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCC--cEEEccCccc
Q 012414 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL--KSLDVSYLKL 211 (464)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~ 211 (464)
.+++|++|+++++ .++...+......+++|++|+++++ .+.... ...+++| +.|++++|.+
T Consensus 88 ~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTT
T ss_pred ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCc-ccchhh----ccccccceeeEEEeecccc
Confidence 4566666666663 3332111111223666666666665 343321 1234555 6666665544
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1e-24 Score=212.00 Aligned_cols=180 Identities=14% Similarity=0.065 Sum_probs=96.9
Q ss_pred CCCCcEEeccCCCccccHH--HHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 012414 274 HSGLLQLDAGHCFSELSTT--LLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC 351 (464)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 351 (464)
+++|++|+++++.. ... ....+..+++|+.|++++|.+...... ...+++|+.|+++++. +...........+
T Consensus 346 ~~~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 420 (570)
T 2z63_A 346 LPSLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 420 (570)
T ss_dssp CTTCCEEECCSSCC--BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTTTTC
T ss_pred CCCCCEEeCcCCcc--CccccccccccccCccCEEECCCCcccccccc--ccccCCCCEEEccCCc-cccccchhhhhcC
Confidence 45555555555542 111 123344556666666666543321111 1245666666666532 2211111122356
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCc
Q 012414 352 VNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSEL 431 (464)
Q Consensus 352 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L 431 (464)
++|++|++++|. +...... ....+++|+.|++++|. +++..+......+++|+.|++++| .+++.....+..+++|
T Consensus 421 ~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 421 RNLIYLDISHTH-TRVAFNG-IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred CCCCEEeCcCCc-ccccchh-hhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCC
Confidence 777777777652 2221111 12256778888887765 332222222345778888888884 7766555666678888
Q ss_pred cEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 432 LFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 432 ~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+.|++++| .++..... .+..+++|+.|++++
T Consensus 497 ~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 497 QVLNMASN-QLKSVPDG-IFDRLTSLQKIWLHT 527 (570)
T ss_dssp CEEECCSS-CCSCCCTT-TTTTCTTCCEEECCS
T ss_pred CEEeCCCC-cCCCCCHH-HhhcccCCcEEEecC
Confidence 88888888 55543222 235678888887763
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.5e-24 Score=212.19 Aligned_cols=373 Identities=14% Similarity=0.110 Sum_probs=183.0
Q ss_pred HHhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCCh-H
Q 012414 60 LLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD-R 138 (464)
Q Consensus 60 ~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~ 138 (464)
.+..+++|+.|+++++. +....... ....++|++|+++++. +....... ...+++|++|+++++. +.. .
T Consensus 75 ~~~~l~~L~~L~Ls~n~-l~~~~p~~------~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~ 144 (606)
T 3vq2_A 75 AWHGLHHLSNLILTGNP-IQSFSPGS------FSGLTSLENLVAVETK-LASLESFP-IGQLITLKKLNVAHNF-IHSCK 144 (606)
T ss_dssp TTTTCTTCCEEECTTCC-CCCCCTTS------STTCTTCCEEECTTSC-CCCSSSSC-CTTCTTCCEEECCSSC-CCCCC
T ss_pred HhhchhhcCEeECCCCc-ccccChhh------cCCcccCCEEEccCCc-cccccccc-cCCCCCCCEEeCCCCc-cccee
Confidence 35677899999999854 44332221 3567899999999874 21111011 3478999999999875 332 2
Q ss_pred HHHHhhcCCCCcEEecCCCCCCCH---HHHHHHHh-----------------------cCCCccEEeccCCCccCHHHHH
Q 012414 139 EAAALSFASGLKEVKLDKCLNVTD---VGLAKIAV-----------------------RCVNLERLSLKWCMEISDLGID 192 (464)
Q Consensus 139 ~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~-----------------------~~~~L~~L~l~~~~~~~~~~~~ 192 (464)
....+..+++|++|+++++ .++. ..+..+.. ...+|++|+++++ .+......
T Consensus 145 lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~ 222 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN-FNSSNIMK 222 (606)
T ss_dssp CCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC-CSCHHHHH
T ss_pred chHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC-ccchhHHH
Confidence 2456888999999999984 3332 12222221 0125666777665 33322222
Q ss_pred HHHhc--------------------------------------------------------CCCCcEEEccCcccChhHH
Q 012414 193 LLCKK--------------------------------------------------------CLDLKSLDVSYLKLTNDSF 216 (464)
Q Consensus 193 ~l~~~--------------------------------------------------------~~~L~~L~l~~~~~~~~~~ 216 (464)
..... +++|+.|+++++.+....
T Consensus 223 ~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~- 301 (606)
T 3vq2_A 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE- 301 (606)
T ss_dssp HHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-
T ss_pred HHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-
Confidence 22222 234444444444332211
Q ss_pred HHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChh----------------------HHHHHHhcC
Q 012414 217 CSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSST----------------------GLISVIRGH 274 (464)
Q Consensus 217 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~----------------------~~~~~~~~~ 274 (464)
.+..+++|++|++.++.. ... ..+ .+++|++|+++++...... ........+
T Consensus 302 -~l~~~~~L~~L~l~~n~l-~~l--p~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 302 -DVPKHFKWQSLSIIRCQL-KQF--PTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp -CCCTTCCCSEEEEESCCC-SSC--CCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred -hccccccCCEEEcccccC-ccc--ccC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 344455666666665432 211 111 2455555555444211111 011222334
Q ss_pred CCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012414 275 SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNL 354 (464)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 354 (464)
++|++|+++++.. .. ....+..+++|+.|++++|.+...........+++|+.|++++|. +.... ......+++|
T Consensus 376 ~~L~~L~L~~n~l--~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 450 (606)
T 3vq2_A 376 NSLRHLDLSFNGA--II-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDF-DGIFLGLTSL 450 (606)
T ss_dssp SCCCEEECCSCSE--EE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECC-TTTTTTCTTC
T ss_pred CcccEeECCCCcc--cc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC-CCccc-hhhhcCCCCC
Confidence 5555555554432 11 112334455555555555543322111111245566666666542 22111 1112345566
Q ss_pred cEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEE
Q 012414 355 KTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFL 434 (464)
Q Consensus 355 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L 434 (464)
++|++++| .+++..+......+++|+.|++++|. ++...... ...+++|+.|++++ +.+++.....+..+++|+.|
T Consensus 451 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 451 NTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGV-FDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCEE
T ss_pred CEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhh-hcccccCCEEECCC-CcCCCcCHHHccCCCcCCEE
Confidence 66666654 22221111112245666666666654 33221111 22456677777766 35655444555566667777
Q ss_pred ecCCccCCChHHHHHHHhcCc-ccceeeec
Q 012414 435 KLGLCENISDKGLFYIASNCL-RIQGLDLY 463 (464)
Q Consensus 435 ~l~~~~~i~~~~~~~~~~~~~-~L~~l~l~ 463 (464)
++++| +++..... +..+| +|+.|+++
T Consensus 527 ~l~~N-~l~~~p~~--~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 527 DCSFN-RIETSKGI--LQHFPKSLAFFNLT 553 (606)
T ss_dssp ECTTS-CCCCEESC--GGGSCTTCCEEECC
T ss_pred ECCCC-cCcccCHh--HhhhcccCcEEEcc
Confidence 77666 44431111 34444 46666654
No 21
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.7e-19 Score=165.97 Aligned_cols=207 Identities=22% Similarity=0.296 Sum_probs=132.6
Q ss_pred CCCCceeecccccccChh---HHHHHHhcCCCCcEEeccCCCccccHHHHH----HHhcC---------CCCcEEEcCCC
Q 012414 248 CPLLKTIFVSRCKFVSST---GLISVIRGHSGLLQLDAGHCFSELSTTLLH----HMRDL---------KNLEAITMDGA 311 (464)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~---------~~L~~L~l~~~ 311 (464)
+++|++|+++++. +... .+...+..+++|++|++++|. +...... .+..+ ++|+.|++++|
T Consensus 93 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 93 CPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp CTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred CCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC--CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 5666666666543 3332 233344556677777777665 3332222 23333 78888888888
Q ss_pred CCChHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHH----hcCCCCcEEeccCCCCCChHHHHHHH---hcCCCCc
Q 012414 312 RISDSCFQTI---SFNCKSLVEIGLSKCLGVTNTGITQLV----SGCVNLKTIDLTCCHSITDDAISAIA---DSCRGLV 381 (464)
Q Consensus 312 ~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~ 381 (464)
.+++.++..+ ...+++|+.|++++| .+.+.++..+. ..+++|+.|++++| .+++.+...+. ..+++|+
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcC
Confidence 7776665533 336778888888875 57766644433 36788888888875 56665544433 3578888
Q ss_pred EEeccCCCCCcHHHHHHHHhc-----CCCccEEecCCCCCCChHHHH----Hh-hcCCCccEEecCCccCCChHH--HHH
Q 012414 382 CLKIESCNMITEKGLYQLGSF-----CLRLEEIDLTDCNGVNDKGLE----YL-SRCSELLFLKLGLCENISDKG--LFY 449 (464)
Q Consensus 382 ~L~l~~~~~~~~~~~~~l~~~-----~~~L~~L~l~~c~~i~~~~~~----~l-~~~~~L~~L~l~~~~~i~~~~--~~~ 449 (464)
.|++++|. +++.+...+... +++|+.|++++ +.+++.++. .+ .++++|+.|++++| .++..+ +..
T Consensus 248 ~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~ 324 (386)
T 2ca6_A 248 ELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDE 324 (386)
T ss_dssp EEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHH
T ss_pred EEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHH
Confidence 88888876 777766554432 68889999988 488875433 33 34788999999888 565544 566
Q ss_pred HHhcCcccceeee
Q 012414 450 IASNCLRIQGLDL 462 (464)
Q Consensus 450 ~~~~~~~L~~l~l 462 (464)
+.+.+|+++.+++
T Consensus 325 l~~~l~~~~~~~l 337 (386)
T 2ca6_A 325 IREVFSTRGRGEL 337 (386)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHhhhcCcchh
Confidence 6666677665544
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.8e-20 Score=175.49 Aligned_cols=318 Identities=19% Similarity=0.205 Sum_probs=229.7
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012414 95 TRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVN 174 (464)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 174 (464)
..++++|++.++. +.. +.. ...+++|++|+++++. +++... +..+++|++|+++++ .+..... ...+++
T Consensus 45 l~~l~~L~l~~~~-i~~--l~~-~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKS--IDG-VEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNN-QIADITP---LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSC-CCC--CTT-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS-CCCCCGG---GTTCTT
T ss_pred hccccEEecCCCC-Ccc--Ccc-hhhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCC-ccccChh---hcCCCC
Confidence 4689999998874 221 122 3478999999999875 443332 788999999999985 4443322 445999
Q ss_pred ccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCcee
Q 012414 175 LERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTI 254 (464)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 254 (464)
|++|+++++ .+.... . ...+++|+.|++++|.+... ..+..+++|++|.+.+. .... ..+ ..+++|+.|
T Consensus 114 L~~L~L~~n-~l~~~~--~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~~--~~~~--~~~-~~l~~L~~L 182 (466)
T 1o6v_A 114 LTGLTLFNN-QITDID--P-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQ--VTDL--KPL-ANLTTLERL 182 (466)
T ss_dssp CCEEECCSS-CCCCCG--G-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEES--CCCC--GGG-TTCTTCCEE
T ss_pred CCEEECCCC-CCCCCh--H-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCCc--ccCc--hhh-ccCCCCCEE
Confidence 999999987 444322 1 45789999999999977653 35778999999999752 2221 112 348999999
Q ss_pred ecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecC
Q 012414 255 FVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLS 334 (464)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 334 (464)
+++++. +.... .+..+++|++|+++++.. .... .+..+++|+.|++++|.+.+.. .+ ..+++|+.|+++
T Consensus 183 ~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l--~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~ 251 (466)
T 1o6v_A 183 DISSNK-VSDIS---VLAKLTNLESLIATNNQI--SDIT--PLGILTNLDELSLNGNQLKDIG--TL-ASLTNLTDLDLA 251 (466)
T ss_dssp ECCSSC-CCCCG---GGGGCTTCSEEECCSSCC--CCCG--GGGGCTTCCEEECCSSCCCCCG--GG-GGCTTCSEEECC
T ss_pred ECcCCc-CCCCh---hhccCCCCCEEEecCCcc--cccc--cccccCCCCEEECCCCCcccch--hh-hcCCCCCEEECC
Confidence 999875 33221 245689999999999863 2211 2677999999999999876542 22 378999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCC
Q 012414 335 KCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDC 414 (464)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c 414 (464)
++. +.... . ...+++|+.|++++| .++.... ...+++|+.|++++|. ++.... ...+++|+.|++++|
T Consensus 252 ~n~-l~~~~--~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 252 NNQ-ISNLA--P-LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFN 319 (466)
T ss_dssp SSC-CCCCG--G-GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSS
T ss_pred CCc-cccch--h-hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCC
Confidence 864 44322 2 457899999999986 4444222 3478999999999976 443221 457899999999995
Q ss_pred CCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 415 NGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 415 ~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
.+++... +..+++|+.|++++| .++.. . ....+++|+.|++++
T Consensus 320 -~l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 320 -NISDISP--VSSLTKLQRLFFYNN-KVSDV--S-SLANLTNINWLSAGH 362 (466)
T ss_dssp -CCSCCGG--GGGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCS
T ss_pred -cCCCchh--hccCccCCEeECCCC-ccCCc--h-hhccCCCCCEEeCCC
Confidence 7765533 678999999999999 66654 2 246889999999864
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.2e-22 Score=191.80 Aligned_cols=355 Identities=14% Similarity=0.113 Sum_probs=226.0
Q ss_pred CCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhh
Q 012414 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (464)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (464)
++++.|+++++ .+....... ....++|++|+++++.. ...........+++|++|+++++. ++......+.
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~------~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETS------FSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTT------TSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTT
T ss_pred CccCEEEecCC-ccCcCChhH------hccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCc-cCccChhhcc
Confidence 67899999884 354432222 34578899999988732 111111223478899999999865 5555555677
Q ss_pred cCCCCcEEecCCCCCCCHHHHHH-HHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcc-
Q 012414 145 FASGLKEVKLDKCLNVTDVGLAK-IAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL- 222 (464)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~- 222 (464)
.+++|++|+++++ .++...+.. ....+++|++|+++++ .+.......+...+++|+.|++++|.+.......+..+
T Consensus 101 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 101 GLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred CcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 8899999999984 555433332 2344889999999887 44433222334578899999999987765544445443
Q ss_pred -cCCceeEecCCCCCChhH-----HHHH--HhcCCCCceeecccccccChhHHHHHHh--cCCCCcEEeccCCCccccHH
Q 012414 223 -AKLESLVMVGCPCVDDTG-----LRFL--ESGCPLLKTIFVSRCKFVSSTGLISVIR--GHSGLLQLDAGHCFSELSTT 292 (464)
Q Consensus 223 -~~L~~L~l~~~~~~~~~~-----~~~l--~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~ 292 (464)
++|+.|+++++. +.+.. .... ....++|++|+++++. +.......+.. ..++|+.|+++++.. ....
T Consensus 179 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~ 255 (455)
T 3v47_A 179 GKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYN-MGSS 255 (455)
T ss_dssp TCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTT-TSCC
T ss_pred cccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccc-cccc
Confidence 678888888754 22210 0000 1124789999998864 44443333332 247889998887642 1110
Q ss_pred ---------HHHHHh--cCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccC
Q 012414 293 ---------LLHHMR--DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (464)
Q Consensus 293 ---------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (464)
....+. ..++|+.|+++++.+.......+ ..+++|+.|+++++ .+.......+ ..+++|++|++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQN-EINKIDDNAF-WGLTHLLKLNLSQ 332 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCS
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhc-ccCCCCCEEECCCC-cccccChhHh-cCcccCCEEECCC
Confidence 001111 23689999999987765433223 36789999999885 3543222222 3678999999998
Q ss_pred CCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccC
Q 012414 362 CHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCEN 441 (464)
Q Consensus 362 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~ 441 (464)
+ .++......+ ..+++|++|++++|. ++......+ ..+++|+.|++++ +.++......+..+++|+.|++++|+-
T Consensus 333 N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 333 N-FLGSIDSRMF-ENLDKLEVLDLSYNH-IRALGDQSF-LGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp S-CCCEECGGGG-TTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-ccCCcChhHh-cCcccCCEEECCCCc-ccccChhhc-cccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCc
Confidence 6 5544322222 368899999999875 544322222 3678999999999 588766555667889999999999843
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=2.8e-23 Score=196.05 Aligned_cols=354 Identities=14% Similarity=0.043 Sum_probs=233.6
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (464)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (464)
..+++++|+++++. +...... ....+++|++|+++++..........+..+++|++|+++++ .++......+. .++
T Consensus 28 l~~~l~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNS-IAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFN-GLA 103 (455)
T ss_dssp CCTTCCEEECCSSC-CCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTT-TCT
T ss_pred CCCccCEEEecCCc-cCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhcc-Ccc
Confidence 44789999999873 3332222 23478999999999876433444456778999999999984 45443333333 489
Q ss_pred CccEEeccCCCccCHHHHH-HHHhcCCCCcEEEccCcccChhHHHH-hhcccCCceeEecCCCCCChhHHHHHHh-cCCC
Q 012414 174 NLERLSLKWCMEISDLGID-LLCKKCLDLKSLDVSYLKLTNDSFCS-IATLAKLESLVMVGCPCVDDTGLRFLES-GCPL 250 (464)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~ 250 (464)
+|++|+++++ .++...+. .....+++|+.|++++|.+....... +..+++|++|+++++. +.......+.. ..++
T Consensus 104 ~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccc
Confidence 9999999998 55543322 22446899999999999877654443 6789999999999854 32221111111 1378
Q ss_pred CceeecccccccCh--hHHH----HHHhcCCCCcEEeccCCCccccHHHHHHHhc---CCCCcEEEcCCCCCChHHH---
Q 012414 251 LKTIFVSRCKFVSS--TGLI----SVIRGHSGLLQLDAGHCFSELSTTLLHHMRD---LKNLEAITMDGARISDSCF--- 318 (464)
Q Consensus 251 L~~L~l~~~~~~~~--~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~--- 318 (464)
|+.|+++++..... ..+. ......++|++|+++++. +.......+.. .++|+.|+++++......+
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccchh
Confidence 88999887642211 1000 011235789999999987 45544444443 4799999998774221100
Q ss_pred -------HHH-HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCC
Q 012414 319 -------QTI-SFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNM 390 (464)
Q Consensus 319 -------~~l-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 390 (464)
..+ ....++|+.|+++++ .+.... ......+++|++|+++++ .++......+ ..+++|+.|++++|.
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKS-KIFALL-KSVFSHFTDLEQLTLAQN-EINKIDDNAF-WGLTHLLKLNLSQNF- 334 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-
T ss_pred hhccCcccccccccccCceEEEecCc-cccccc-hhhcccCCCCCEEECCCC-cccccChhHh-cCcccCCEEECCCCc-
Confidence 000 013478999999985 344322 222346889999999986 5554322222 267999999999976
Q ss_pred CcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 391 ITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 391 ~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
++..... ....+++|+.|++++ +.++......+..+++|++|++++| +++..... .+..+++|+.|++++
T Consensus 335 l~~~~~~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 335 LGSIDSR-MFENLDKLEVLDLSY-NHIRALGDQSFLGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHT 404 (455)
T ss_dssp CCEECGG-GGTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCS
T ss_pred cCCcChh-HhcCcccCCEEECCC-CcccccChhhccccccccEEECCCC-ccccCCHh-HhccCCcccEEEccC
Confidence 5433222 234789999999999 5888776677888999999999999 66653322 236889999999874
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=1.5e-22 Score=200.76 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=29.0
Q ss_pred CCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCC
Q 012414 276 GLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSK 335 (464)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 335 (464)
+|+.|+++++. +.......+..+++|+.|++++|.+.......+ ..+++|+.|++++
T Consensus 249 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 249 NLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKR 305 (680)
T ss_dssp CCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTT
T ss_pred CCCEEECCCCC--cCccCcccccCcccccEeeCCCCccCccChhhh-cCCCCccEEeccc
Confidence 46666666654 222223344556666666666665443222222 2455666666654
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=5.1e-23 Score=201.18 Aligned_cols=344 Identities=13% Similarity=0.083 Sum_probs=204.3
Q ss_pred ccCCCccEEEecCCCCCChH----------------HHHHHHh--hCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEec
Q 012414 93 SWTRSLKSLILSRSTGLRYR----------------GLEMLAR--ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKL 154 (464)
Q Consensus 93 ~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 154 (464)
...++|++|+++++. ++.. .++.-.. .+++|++|+++++. +.......+..+++|++|++
T Consensus 203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEEEC
T ss_pred hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEEEC
Confidence 446788888888774 4331 0222333 67888888888765 23333356777888888888
Q ss_pred CCCCCCCH-HHHHHHHh-----cCCCccEEeccCCCccCHHHHHH--HHhcCCCCcEEEccCcccChhHHHHhhcccCCc
Q 012414 155 DKCLNVTD-VGLAKIAV-----RCVNLERLSLKWCMEISDLGIDL--LCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (464)
Q Consensus 155 ~~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 226 (464)
+++..++. .....+.. .+++|++|+++++ .++ .+.. ....+++|+.|++++|.+..... .+..+++|+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 88433665 33333333 2488888888877 444 2222 33467888888888886663333 666778888
Q ss_pred eeEecCCCCCChhHHHHHHhcCCC-CceeecccccccChhHHHHHHhc--CCCCcEEeccCCCccccHHHHHHHh-----
Q 012414 227 SLVMVGCPCVDDTGLRFLESGCPL-LKTIFVSRCKFVSSTGLISVIRG--HSGLLQLDAGHCFSELSTTLLHHMR----- 298 (464)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~----- 298 (464)
.|+++++. +. .+......+++ |++|+++++. +.. +...+.. +++|++|+++++. +.......+.
T Consensus 357 ~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 357 SLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNK-LKY--IPNIFDAKSVSVMSAIDFSYNE--IGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEECCSSE-EE--ECCTTSEEECTTCCEEECCSSC-CSS--CCSCCCTTCSSCEEEEECCSSC--TTTTTTCSSCTTCSS
T ss_pred EEECCCCc-cc--cccHhhhhhcccCcEEEccCCc-Ccc--cchhhhhcccCccCEEECcCCc--CCCcchhhhcccccc
Confidence 88888753 22 11111223566 8888888764 221 1111222 3378888888776 3333333344
Q ss_pred --cCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc-------CCCCcEEeccCCCCCChHH
Q 012414 299 --DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSG-------CVNLKTIDLTCCHSITDDA 369 (464)
Q Consensus 299 --~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~l~~~~ 369 (464)
.+++|+.|++++|.+..... .+...+++|+.|+++++. +..... ..... +++|+.|+++++ .++.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~-- 502 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNM-LTEIPK-NSLKDENENFKNTYLLTSIDLRFN-KLTK-- 502 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCSSC-CSBCCS-SSSEETTEECTTGGGCCEEECCSS-CCCB--
T ss_pred cccCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCCCC-CCCcCH-HHhccccccccccCCccEEECcCC-cCCc--
Confidence 56688888888887663322 233367888888888753 432110 01111 127888888875 4552
Q ss_pred HHHHH--hcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCC-----CCCChHHHHHhhcCCCccEEecCCccCC
Q 012414 370 ISAIA--DSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDC-----NGVNDKGLEYLSRCSELLFLKLGLCENI 442 (464)
Q Consensus 370 ~~~l~--~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c-----~~i~~~~~~~l~~~~~L~~L~l~~~~~i 442 (464)
+.... ..+++|+.|++++|. ++. +..-...+++|+.|+++++ +.+.......+..+++|+.|++++| .+
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l 578 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DI 578 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CC
T ss_pred cChhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cC
Confidence 22212 257888888888865 443 2222336788888888542 3444344455667888888888888 55
Q ss_pred ChHHHHHHHhcCcccceeeecC
Q 012414 443 SDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 443 ~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+..... ..++|+.|++++
T Consensus 579 ~~ip~~----~~~~L~~L~Ls~ 596 (636)
T 4eco_A 579 RKVNEK----ITPNISVLDIKD 596 (636)
T ss_dssp CBCCSC----CCTTCCEEECCS
T ss_pred CccCHh----HhCcCCEEECcC
Confidence 432211 227788887764
No 27
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.6e-18 Score=159.52 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=146.3
Q ss_pred HHHhcCCCCcEEeccCCCccccH----HHHHHHhcCCCCcEEEcCCCCCChHHHHHHHH---hC---------CCCcEEe
Q 012414 269 SVIRGHSGLLQLDAGHCFSELST----TLLHHMRDLKNLEAITMDGARISDSCFQTISF---NC---------KSLVEIG 332 (464)
Q Consensus 269 ~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~---~~---------~~L~~L~ 332 (464)
..+..+++|++|+++++. +.. .....+..+++|+.|++++|.+++.+...+.. .+ ++|++|+
T Consensus 88 ~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNA--FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHHTTCTTCCEEECCSCC--CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHhhCCcccEEECCCCc--CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 334578999999999987 444 45667889999999999999987666555443 23 8999999
Q ss_pred cCCCCCCCHHHHHH---HHhcCCCCcEEeccCCCCCChHHHHHHHh----cCCCCcEEeccCCCCCcHHHHHHH---Hhc
Q 012414 333 LSKCLGVTNTGITQ---LVSGCVNLKTIDLTCCHSITDDAISAIAD----SCRGLVCLKIESCNMITEKGLYQL---GSF 402 (464)
Q Consensus 333 l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l---~~~ 402 (464)
+++| .+.+.++.. .+..+++|++|++++| .+++.++..+.. .+++|+.|++++|. +++.+...+ ...
T Consensus 166 L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 166 CGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKS 242 (386)
T ss_dssp CCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGG
T ss_pred CCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHcc
Confidence 9985 576555553 3457899999999996 788887665554 68999999999976 777665544 356
Q ss_pred CCCccEEecCCCCCCChHHHHHhh----c--CCCccEEecCCccCCChHHHHHHH----hcCcccceeeecC
Q 012414 403 CLRLEEIDLTDCNGVNDKGLEYLS----R--CSELLFLKLGLCENISDKGLFYIA----SNCLRIQGLDLYK 464 (464)
Q Consensus 403 ~~~L~~L~l~~c~~i~~~~~~~l~----~--~~~L~~L~l~~~~~i~~~~~~~~~----~~~~~L~~l~l~~ 464 (464)
+++|+.|++++| .+++.+...+. . +++|+.|++++| .++..++..+. ..+|+|+.|++++
T Consensus 243 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 243 WPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 899999999995 89887655443 2 899999999999 88886555443 4579999999874
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.2e-21 Score=189.46 Aligned_cols=183 Identities=18% Similarity=0.162 Sum_probs=119.2
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (464)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (464)
..+.+++|+++++. +....... ...+++|++|+++++. ++......+..+++|++|+++++ .++......+. .++
T Consensus 24 ~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNK-ITYIGHGD-LRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFG-PLS 98 (549)
T ss_dssp CCTTCCEEECCSSC-CCEECSST-TSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHT-TCT
T ss_pred CCCCccEEECcCCc-cCccChhh-hhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCC-ccCccCHHHhc-cCC
Confidence 34789999999884 33322122 2478999999999875 55555566888999999999984 55554444444 499
Q ss_pred CccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcc-cChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCc
Q 012414 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLK-LTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLK 252 (464)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 252 (464)
+|++|+++++ .+...........+++|+.|++++|. +.......+..+++|++|+++++. +.......+. .+++|+
T Consensus 99 ~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~ 175 (549)
T 2z81_A 99 SLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLK-SIRDIH 175 (549)
T ss_dssp TCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTT-TCSEEE
T ss_pred CCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhh-ccccCc
Confidence 9999999987 44322111223468899999999986 444333457778999999998754 3332222222 256777
Q ss_pred eeecccccccChhHHHHHHhcCCCCcEEeccCCC
Q 012414 253 TIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCF 286 (464)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 286 (464)
+|+++++.. .. ....+...+++|++|+++++.
T Consensus 176 ~L~l~~n~~-~~-~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 176 HLTLHLSES-AF-LLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEECSBS-TT-HHHHHHHSTTTBSEEEEESCB
T ss_pred eEecccCcc-cc-cchhhHhhcccccEEEccCCc
Confidence 777766432 11 112233446677777776654
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=180.78 Aligned_cols=360 Identities=16% Similarity=0.147 Sum_probs=186.3
Q ss_pred HHHHhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCCh
Q 012414 58 FILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGD 137 (464)
Q Consensus 58 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 137 (464)
...+..+++|+.|+++++. +....... ....++|++|+++++. +.. ++.. .+++|++|+++++. ++.
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~------~~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~L~~N~-l~~ 104 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNR-IQYLDISV------FKFNQELEYLDLSHNK-LVK--ISCH--PTVNLKHLDLSFNA-FDA 104 (520)
T ss_dssp HHHHTTCTTCCEEECCSSC-CCEEEGGG------GTTCTTCCEEECCSSC-CCE--EECC--CCCCCSEEECCSSC-CSS
T ss_pred hhhccccccccEEecCCCc-cCCcChHH------hhcccCCCEEecCCCc-eee--cCcc--ccCCccEEeccCCc-ccc
Confidence 3456788999999999853 54432222 3456899999999874 332 1111 68999999999875 333
Q ss_pred -HHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCc--cEEeccCCCcc-CH---HHHH------------------
Q 012414 138 -REAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNL--ERLSLKWCMEI-SD---LGID------------------ 192 (464)
Q Consensus 138 -~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~~-~~---~~~~------------------ 192 (464)
.....++.+++|++|++++ ..++...+ ..+++| ++|+++++... .. ..+.
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~-n~l~~~~~----~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~ 179 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLST-THLEKSSV----LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEE-SSCCGGGG----GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred ccchhhhccCCcceEEEecC-cccchhhc----cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchh
Confidence 2235678899999999998 45665332 336777 88888776220 00 0000
Q ss_pred ----------------------------------HHHhcCCCCcEEEccCcccChhHHHHhh---cccCCceeEecCCCC
Q 012414 193 ----------------------------------LLCKKCLDLKSLDVSYLKLTNDSFCSIA---TLAKLESLVMVGCPC 235 (464)
Q Consensus 193 ----------------------------------~l~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~ 235 (464)
.-...+++|+.|+++++.++...+..+. ..++|++|+++++..
T Consensus 180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259 (520)
T ss_dssp CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence 0112344555555555444433322221 133555555544320
Q ss_pred ---CChhHHHHHHhcCCCCceeecccccc-cChhHHHHHH---------------------hcCCCCcEEeccCCCcccc
Q 012414 236 ---VDDTGLRFLESGCPLLKTIFVSRCKF-VSSTGLISVI---------------------RGHSGLLQLDAGHCFSELS 290 (464)
Q Consensus 236 ---~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~~~~~~---------------------~~~~~L~~L~l~~~~~~~~ 290 (464)
+....+......+++|+.++++++.. ++...+.... ..+++|++|+++++. +.
T Consensus 260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~--l~ 337 (520)
T 2z7x_B 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL--LT 337 (520)
T ss_dssp ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC--CC
T ss_pred cCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc--cC
Confidence 00000000000122222222222110 0001111111 345667777777665 34
Q ss_pred HHHHHHHhcCCCCcEEEcCCCCCChH-HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHH
Q 012414 291 TTLLHHMRDLKNLEAITMDGARISDS-CFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDA 369 (464)
Q Consensus 291 ~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 369 (464)
......+..+++|+.|++++|.+... .+......+++|+.|+++++. +...........+++|++|++++| .++...
T Consensus 338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~ 415 (520)
T 2z7x_B 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSN-ILTDTI 415 (520)
T ss_dssp TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSS-CCCGGG
T ss_pred hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCC-CCCcch
Confidence 33344556667777777777766542 222223366777777777643 322111111224567777777764 344322
Q ss_pred HHHHHhcC-CCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHH
Q 012414 370 ISAIADSC-RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGL 447 (464)
Q Consensus 370 ~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~ 447 (464)
. ..+ ++|+.|++++|. ++. +..-...+++|+.|++++ +.++......+..+++|+.|++++|+-..+..+
T Consensus 416 ~----~~l~~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 416 F----RCLPPRIKVLDLHSNK-IKS--IPKQVVKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp G----GSCCTTCCEEECCSSC-CCC--CCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred h----hhhcccCCEEECCCCc-ccc--cchhhhcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 1 122 577777777764 441 211122567777777777 366543333355677777777777744444443
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=3.2e-22 Score=198.43 Aligned_cols=328 Identities=14% Similarity=0.076 Sum_probs=157.6
Q ss_pred CCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHH-------HH
Q 012414 123 LLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDL-------LC 195 (464)
Q Consensus 123 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------l~ 195 (464)
+|++|+++++. ++......+..+++|++|+++++ .+.......+ ..+++|++|+++++.......... ..
T Consensus 249 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 249 NLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp CCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSC-CBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCCEEECCCCC-cCccCcccccCcccccEeeCCCC-ccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhc
Confidence 46666666653 33333334556667777777663 3332211122 236666666666432111110000 11
Q ss_pred hcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCC---------------------------CChhHHHHHHhcC
Q 012414 196 KKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPC---------------------------VDDTGLRFLESGC 248 (464)
Q Consensus 196 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---------------------------~~~~~~~~l~~~~ 248 (464)
..+++|+.|++++|.+.......+..+++|++|+++++.. +.......+ ..+
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l 404 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWL 404 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-TTC
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-hCC
Confidence 2456677777777655554444455566666666665320 111000111 123
Q ss_pred CCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHH-HHHHHHhCCC
Q 012414 249 PLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSC-FQTISFNCKS 327 (464)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~ 327 (464)
++|+.|+++++.. ........+..+++|++|+++++. +.......+..+++|+.|+++++.+...+ .......+++
T Consensus 405 ~~L~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 405 GHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNK--YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp TTCCEEECCSSCC-EEECCSGGGTTCTTCCEEECCSCS--EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred CCCCEEeCCCCcC-ccccCcccccCcccccEEecCCCC--cceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 4444444444321 100000112234455555555443 22222223334555555555555432110 1111124566
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHH-------HHHhcCCCCcEEeccCCCCCcHHHHHHHH
Q 012414 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAIS-------AIADSCRGLVCLKIESCNMITEKGLYQLG 400 (464)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 400 (464)
|+.|+++++ .++..... ....+++|+.|+++++ .++..... .....+++|+.|+++++. ++..... ..
T Consensus 482 L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~-~~ 556 (680)
T 1ziw_A 482 LTILDLSNN-NIANINDD-MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVE-VF 556 (680)
T ss_dssp CCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTT-TT
T ss_pred CCEEECCCC-CCCcCChh-hhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHH-Hc
Confidence 777777664 23321111 1235667777777764 33321100 012356777777777754 4321111 12
Q ss_pred hcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 401 SFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 401 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
..+++|+.|++++ +.++......+..+++|+.|++++| .++......+...+++|+.|++++
T Consensus 557 ~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 557 KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence 3567888888877 5776554445567788888888888 665543333323567888887753
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.1e-21 Score=189.70 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=25.2
Q ss_pred cCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHH-HHHHHHhcCCCCcEEeccC
Q 012414 299 DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNT-GITQLVSGCVNLKTIDLTC 361 (464)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~ 361 (464)
.+++|+.|++++|.+.+.....+ ..+++|+.|+++++ .++.. .+......+++|+.|++++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred CCCCceEEECCCCccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC
Confidence 34455555555554443221111 13455555555543 23321 1111223445555555554
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=1.1e-22 Score=205.58 Aligned_cols=375 Identities=20% Similarity=0.119 Sum_probs=183.1
Q ss_pred CCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhh
Q 012414 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (464)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (464)
++++.|+++++ .+....... ....++|+.|+++++....... ......+++|++|+++++. +.......+.
T Consensus 24 ~~l~~LdLs~N-~i~~i~~~~------~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~ 94 (844)
T 3j0a_A 24 NTTERLLLSFN-YIRTVTASS------FPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSK-IYFLHPDAFQ 94 (844)
T ss_dssp TTCCEEEEESC-CCCEECSSS------CSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCC-CCEECTTSSC
T ss_pred CCcCEEECCCC-cCCccChhH------CcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCc-CcccCHhHcc
Confidence 67888888874 344332221 3456788888888773222111 1222477888888888764 5555455677
Q ss_pred cCCCCcEEecCCCCCCCHHHHHH-HHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcc-
Q 012414 145 FASGLKEVKLDKCLNVTDVGLAK-IAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATL- 222 (464)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~- 222 (464)
.+++|++|+++++ .++...+.. ....+++|++|+++++ .+...........+++|+.|++++|.+.......+..+
T Consensus 95 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 95 GLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred CCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 7888888888874 444321111 1234788888888876 33322222223467888888888886654333333333
Q ss_pred -cCCceeEecCCCCCChhHHHHHHhcC------CCCceeecccccccChhHHHHH-------------------------
Q 012414 223 -AKLESLVMVGCPCVDDTGLRFLESGC------PLLKTIFVSRCKFVSSTGLISV------------------------- 270 (464)
Q Consensus 223 -~~L~~L~l~~~~~~~~~~~~~l~~~~------~~L~~L~l~~~~~~~~~~~~~~------------------------- 270 (464)
++|+.|+++++. +.......+. .+ .+|+.|+++++. +.......+
T Consensus 173 ~~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 173 GKTLSFFSLAANS-LYSRVSVDWG-KCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HCSSCCCEECCSB-SCCCCCCCCC-SSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred CCccceEECCCCc-cccccccchh-hcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccc
Confidence 666777666543 1111000000 01 125666665542 110000000
Q ss_pred ----------Hhc--CCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCC
Q 012414 271 ----------IRG--HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLG 338 (464)
Q Consensus 271 ----------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 338 (464)
+.. .++|+.|+++++. +.......+..+++|+.|++++|.+.......+ ..+++|+.|+++++.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~- 325 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGF--VFSLNSRVFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNL- 325 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCC--CCEECSCCSSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCC-
T ss_pred cccCCCChhhhhccccCCccEEECCCCc--ccccChhhhhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCC-
Confidence 000 2456666666554 222222334456666666666665443322222 245666666666542
Q ss_pred CCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHH--------------HHHHhcCC
Q 012414 339 VTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGL--------------YQLGSFCL 404 (464)
Q Consensus 339 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--------------~~l~~~~~ 404 (464)
+...... ....+++|+.|+++++ .++...... ...+++|+.|+++++. ++.... ..+.....
T Consensus 326 l~~~~~~-~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~L~~L~l~~N~l~~l~~~~~ 401 (844)
T 3j0a_A 326 LGELYSS-NFYGLPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDNA-LTTIHFIPSIPDIFLSGNKLVTLPKINL 401 (844)
T ss_dssp CSCCCSC-SCSSCTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETCC-SCCCSSCCSCSEEEEESCCCCCCCCCCT
T ss_pred CCccCHH-HhcCCCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCCC-CCcccCCCCcchhccCCCCccccccccc
Confidence 2211111 1124456666666653 332211111 1235566666665543 221100 00011123
Q ss_pred CccEEecCCCCCCChH-HHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeec
Q 012414 405 RLEEIDLTDCNGVNDK-GLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY 463 (464)
Q Consensus 405 ~L~~L~l~~c~~i~~~-~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~ 463 (464)
+++.|++++ +.++.. ....+..+++|+.|++++| .++..........+++|+.|+++
T Consensus 402 ~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 402 TANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp TCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEE
T ss_pred ccceeeccc-CccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCC
Confidence 444455544 344332 2223446777777777777 44432111122346777777765
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=5.6e-21 Score=176.20 Aligned_cols=324 Identities=17% Similarity=0.109 Sum_probs=212.8
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (464)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (464)
...+++.|++.++. +... ...+...+++|++|+++++. +++.....+..+++|++|+++++ .++......+ ..++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVF-QNVP 117 (390)
T ss_dssp GGCCCSEEEEESCE-ESEE-CTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCT
T ss_pred ccCCceEEEecCCc-hhhC-ChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC-CCCcCCHHHh-cCCC
Confidence 45678888887753 2221 12233477888888888764 55554456777888999998874 4443222222 3488
Q ss_pred CccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCce
Q 012414 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (464)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (464)
+|++|+++++ .++... ..+...+++|++|++++|.+.......+..+++|++|+++++. +.... ...+++|+.
T Consensus 118 ~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~~ 190 (390)
T 3o6n_A 118 LLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFH 190 (390)
T ss_dssp TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC----GGGCTTCSE
T ss_pred CCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc----cccccccce
Confidence 8999998887 444211 1122467889999999887766555557778899999998753 44332 133788999
Q ss_pred eecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEec
Q 012414 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (464)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (464)
++++++. +.. ....++|++|+++++.. ... .....++|+.|++++|.+.+.. . ...+++|+.|++
T Consensus 191 L~l~~n~-l~~------~~~~~~L~~L~l~~n~l--~~~---~~~~~~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L 255 (390)
T 3o6n_A 191 ANVSYNL-LST------LAIPIAVEELDASHNSI--NVV---RGPVNVELTILKLQHNNLTDTA--W-LLNYPGLVEVDL 255 (390)
T ss_dssp EECCSSC-CSE------EECCSSCSEEECCSSCC--CEE---ECCCCSSCCEEECCSSCCCCCG--G-GGGCTTCSEEEC
T ss_pred eeccccc-ccc------cCCCCcceEEECCCCee--eec---cccccccccEEECCCCCCcccH--H-HcCCCCccEEEC
Confidence 9988753 222 12356799999888763 211 1123568999999999876642 2 347889999999
Q ss_pred CCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCC
Q 012414 334 SKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (464)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 413 (464)
+++ .+....... ...+++|++|+++++ .++.. ......+++|+.|++++|. ++... .-...+++|+.|++++
T Consensus 256 s~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 256 SYN-ELEKIMYHP-FVKMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHNH-LLHVE--RNQPQFDRLENLYLDH 327 (390)
T ss_dssp CSS-CCCEEESGG-GTTCSSCCEEECCSS-CCCEE--ECSSSCCTTCCEEECCSSC-CCCCG--GGHHHHTTCSEEECCS
T ss_pred CCC-cCCCcChhH-ccccccCCEEECCCC-cCccc--CcccCCCCCCCEEECCCCc-ceecC--ccccccCcCCEEECCC
Confidence 985 454432222 246789999999985 44432 1112357899999999976 44221 1123568999999999
Q ss_pred CCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCccc
Q 012414 414 CNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRI 457 (464)
Q Consensus 414 c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L 457 (464)
+.++... +..+++|+.|++++| .++......+.+.++..
T Consensus 328 -N~i~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~~~ 366 (390)
T 3o6n_A 328 -NSIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFRNVARP 366 (390)
T ss_dssp -SCCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTTTCCTT
T ss_pred -CccceeC---chhhccCCEEEcCCC-CccchhHHHHHHHHHhh
Confidence 5776553 557899999999999 77777777666555443
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=3.9e-21 Score=191.14 Aligned_cols=342 Identities=14% Similarity=0.069 Sum_probs=202.7
Q ss_pred ccCCCccEEEecCCCCCChH----------------HHHHHHh--hCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEec
Q 012414 93 SWTRSLKSLILSRSTGLRYR----------------GLEMLAR--ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKL 154 (464)
Q Consensus 93 ~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 154 (464)
...++|+.|+++++. ++.. .++.-.. .+++|++|+++++.. .......+..+++|++|++
T Consensus 445 ~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 445 QRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEEC
T ss_pred hcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEEC
Confidence 456788888888874 3331 1222222 678888888887652 2233356778888899988
Q ss_pred CCCCCCCH-HHHHHHH------hcCCCccEEeccCCCccCHHHHHH--HHhcCCCCcEEEccCcccChhHHHHhhcccCC
Q 012414 155 DKCLNVTD-VGLAKIA------VRCVNLERLSLKWCMEISDLGIDL--LCKKCLDLKSLDVSYLKLTNDSFCSIATLAKL 225 (464)
Q Consensus 155 ~~~~~~~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 225 (464)
+++..++. .....+. ..+++|++|+++++ .+. .+.. ....+++|+.|++++|.+.... .+..+++|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L 597 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKL 597 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcc
Confidence 88433665 3332222 23568888888887 444 2222 3346788888888888776222 66778888
Q ss_pred ceeEecCCCCCChhHHHHHHhcCCC-CceeecccccccChhHHHHHHhcC--CCCcEEeccCCCccccHHH---HHHHh-
Q 012414 226 ESLVMVGCPCVDDTGLRFLESGCPL-LKTIFVSRCKFVSSTGLISVIRGH--SGLLQLDAGHCFSELSTTL---LHHMR- 298 (464)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---~~~~~- 298 (464)
+.|+++++. +.. +......+++ |+.|+++++. +.. +...+... ++|+.|+++++.. .... ...+.
T Consensus 598 ~~L~Ls~N~-l~~--lp~~l~~l~~~L~~L~Ls~N~-L~~--lp~~~~~~~~~~L~~L~Ls~N~l--~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 598 TDLKLDYNQ-IEE--IPEDFCAFTDQVEGLGFSHNK-LKY--IPNIFNAKSVYVMGSVDFSYNKI--GSEGRNISCSMDD 669 (876)
T ss_dssp SEEECCSSC-CSC--CCTTSCEECTTCCEEECCSSC-CCS--CCSCCCTTCSSCEEEEECCSSCT--TTTSSSCSSCTTT
T ss_pred eEEECcCCc-ccc--chHHHhhccccCCEEECcCCC-CCc--CchhhhccccCCCCEEECcCCcC--CCccccchhhhcc
Confidence 888888754 331 1111223567 8888888764 321 11222222 3488888887753 2111 01111
Q ss_pred -cCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHH-HHh-------cCCCCcEEeccCCCCCChHH
Q 012414 299 -DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQ-LVS-------GCVNLKTIDLTCCHSITDDA 369 (464)
Q Consensus 299 -~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~-------~~~~L~~L~l~~~~~l~~~~ 369 (464)
.+++|+.|++++|.+.... ..+...+++|+.|+++++ .+.. +.. ... .+++|+.|++++| .++.
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~-- 742 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNN-LMTS--IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS-- 742 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSC-CCSC--CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC--
T ss_pred ccCCCcCEEEccCCcCCccC-HHHHccCCCCCEEECCCC-cCCc--cChHHhccccccccccCCccEEECCCC-CCcc--
Confidence 2347888888888776332 223346788888888875 3431 111 111 1237888888875 4552
Q ss_pred HHHHH--hcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCC-----CCCChHHHHHhhcCCCccEEecCCccCC
Q 012414 370 ISAIA--DSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDC-----NGVNDKGLEYLSRCSELLFLKLGLCENI 442 (464)
Q Consensus 370 ~~~l~--~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c-----~~i~~~~~~~l~~~~~L~~L~l~~~~~i 442 (464)
+.... ..+++|+.|++++|. ++. +..-...+++|+.|+++++ +.+.......+..+++|+.|++++| .+
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L 818 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DI 818 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CC
T ss_pred chHHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CC
Confidence 22222 257888888888865 443 2222336788888888652 2344333445667888888888888 55
Q ss_pred ChHHHHHHHhcCcccceeeecC
Q 012414 443 SDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 443 ~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+..... -+++|+.|+|++
T Consensus 819 ~~Ip~~----l~~~L~~LdLs~ 836 (876)
T 4ecn_A 819 RKVDEK----LTPQLYILDIAD 836 (876)
T ss_dssp CBCCSC----CCSSSCEEECCS
T ss_pred CccCHh----hcCCCCEEECCC
Confidence 432111 236788888764
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.6e-22 Score=196.64 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=125.5
Q ss_pred cCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCC
Q 012414 247 GCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCK 326 (464)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 326 (464)
.+++|+.|+++++...........+..+++|++|+++++.. .... ..+..+++|+.|++++|.+...........++
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE--EEEE-EEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc--cccc-ccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 36778888887754221111123345689999999999863 2211 12678999999999999754432212223789
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCc
Q 012414 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406 (464)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 406 (464)
+|+.|++++|. +.... ......+++|++|++++| .+++..+......+++|+.|++++|. ++......+ ..+++|
T Consensus 422 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L 496 (570)
T 2z63_A 422 NLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSL 496 (570)
T ss_dssp TCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTC
T ss_pred CCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhh-hcccCC
Confidence 99999999864 33221 122346899999999986 34322122223368999999999986 554322222 368999
Q ss_pred cEEecCCCCCCChHHHHHhhcCCCccEEecCCccC
Q 012414 407 EEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCEN 441 (464)
Q Consensus 407 ~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~ 441 (464)
+.|++++ +.++......+..+++|+.|++++|+-
T Consensus 497 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 497 QVLNMAS-NQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEeCCC-CcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 9999999 488776656677899999999999853
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=6.1e-22 Score=187.82 Aligned_cols=302 Identities=16% Similarity=0.128 Sum_probs=144.7
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (464)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (464)
..+.++.|+++++. +....... ...+++|++|+++++. ++......+..+++|++|+++++ .++..... ....++
T Consensus 30 ~~~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~ 104 (477)
T 2id5_A 30 IPTETRLLDLGKNR-IKTLNQDE-FASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLG-VFTGLS 104 (477)
T ss_dssp CCTTCSEEECCSSC-CCEECTTT-TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCTT-SSTTCT
T ss_pred CCCCCcEEECCCCc-cceECHhH-ccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCC-cCCccCcc-cccCCC
Confidence 44678888888763 32221112 2367888888888763 55544556667788888888763 34322111 122367
Q ss_pred CccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCce
Q 012414 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (464)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (464)
+|++|+++++ .+..... .....+++|+.|++++|.+.......+..+++|++|+++++. +.......+. .+++|+.
T Consensus 105 ~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L~~ 180 (477)
T 2id5_A 105 NLTKLDISEN-KIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALS-HLHGLIV 180 (477)
T ss_dssp TCCEEECTTS-CCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHT-TCTTCCE
T ss_pred CCCEEECCCC-ccccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhc-ccCCCcE
Confidence 7777777765 2321111 112356677777777765554444445566667777766642 3322222222 2566666
Q ss_pred eecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEec
Q 012414 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (464)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (464)
|+++++. +.... ...+..+++|++|+++++.. ... .........+|+.|++++|.+.......
T Consensus 181 L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~------------- 243 (477)
T 2id5_A 181 LRLRHLN-INAIR-DYSFKRLYRLKVLEISHWPY-LDT-MTPNCLYGLNLTSLSITHCNLTAVPYLA------------- 243 (477)
T ss_dssp EEEESCC-CCEEC-TTCSCSCTTCCEEEEECCTT-CCE-ECTTTTTTCCCSEEEEESSCCCSCCHHH-------------
T ss_pred EeCCCCc-CcEeC-hhhcccCcccceeeCCCCcc-ccc-cCcccccCccccEEECcCCcccccCHHH-------------
Confidence 6665542 11100 01122344555555554432 110 0011111224444444444333222111
Q ss_pred CCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCC
Q 012414 334 SKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (464)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 413 (464)
+ ..+++|+.|+++++ .++......+ ..+++|+.|+++++. ++...... ...+++|+.|++++
T Consensus 244 -------------~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 244 -------------V-RHLVYLRFLNLSYN-PISTIEGSML-HELLRLQEIQLVGGQ-LAVVEPYA-FRGLNYLRVLNVSG 305 (477)
T ss_dssp -------------H-TTCTTCCEEECCSS-CCCEECTTSC-TTCTTCCEEECCSSC-CSEECTTT-BTTCTTCCEEECCS
T ss_pred -------------h-cCccccCeeECCCC-cCCccChhhc-cccccCCEEECCCCc-cceECHHH-hcCcccCCEEECCC
Confidence 1 24455555555543 2222111111 134556666665543 32221111 12456666666666
Q ss_pred CCCCChHHHHHhhcCCCccEEecCCcc
Q 012414 414 CNGVNDKGLEYLSRCSELLFLKLGLCE 440 (464)
Q Consensus 414 c~~i~~~~~~~l~~~~~L~~L~l~~~~ 440 (464)
+.++......+..+++|+.|++++|+
T Consensus 306 -N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 306 -NQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -SCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -CcCceeCHhHcCCCcccCEEEccCCC
Confidence 35554444444456666666666664
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=5e-22 Score=188.40 Aligned_cols=298 Identities=17% Similarity=0.085 Sum_probs=174.7
Q ss_pred CCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCC
Q 012414 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (464)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 201 (464)
++++.|+++++. ++......+..+++|++|+++++ .++......+. .+++|++|+++++ .++.... .....+++|
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFN-NLFNLRTLGLRSN-RLKLIPL-GVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSS-CCCSCCT-TSSTTCTTC
T ss_pred CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCC-ccCEeChhhhh-CCccCCEEECCCC-cCCccCc-ccccCCCCC
Confidence 578888888754 55444455667778888888773 44432222222 3667777777665 2321111 111245666
Q ss_pred cEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEe
Q 012414 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLD 281 (464)
Q Consensus 202 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (464)
+.|++++|.+.......+..+++|++|+++++. +....... +..+++|++|+
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---------------------------~~~l~~L~~L~ 158 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRA---------------------------FSGLNSLEQLT 158 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTS---------------------------STTCTTCCEEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhh---------------------------ccCCCCCCEEE
Confidence 666666665544333344555566666665432 22111111 12344555555
Q ss_pred ccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccC
Q 012414 282 AGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (464)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (464)
++++. +.......+..+++|+.|+++++.+.......+ ..+++|+.|+++++......... . ....+|++|++++
T Consensus 159 l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~-~-~~~~~L~~L~l~~ 233 (477)
T 2id5_A 159 LEKCN--LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPN-C-LYGLNLTSLSITH 233 (477)
T ss_dssp EESCC--CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTT-T-TTTCCCSEEEEES
T ss_pred CCCCc--CcccChhHhcccCCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcc-c-ccCccccEEECcC
Confidence 55543 232233445556666666666665433222122 25677888888775443321111 1 1335899999998
Q ss_pred CCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccC
Q 012414 362 CHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCEN 441 (464)
Q Consensus 362 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~ 441 (464)
| .++...... ...+++|+.|+++++. ++...... ...+++|+.|++++ +.++......+..+++|+.|++++| .
T Consensus 234 n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~ 307 (477)
T 2id5_A 234 C-NLTAVPYLA-VRHLVYLRFLNLSYNP-ISTIEGSM-LHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGN-Q 307 (477)
T ss_dssp S-CCCSCCHHH-HTTCTTCCEEECCSSC-CCEECTTS-CTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSS-C
T ss_pred C-cccccCHHH-hcCccccCeeECCCCc-CCccChhh-ccccccCCEEECCC-CccceECHHHhcCcccCCEEECCCC-c
Confidence 6 555433223 3478999999999976 54332222 23689999999999 5888776677888999999999999 6
Q ss_pred CChHHHHHHHhcCcccceeeecC
Q 012414 442 ISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 442 i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
++...... +..+++|+.|++++
T Consensus 308 l~~~~~~~-~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 308 LTTLEESV-FHSVGNLETLILDS 329 (477)
T ss_dssp CSCCCGGG-BSCGGGCCEEECCS
T ss_pred CceeCHhH-cCCCcccCEEEccC
Confidence 66533222 25789999999864
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=3e-22 Score=195.75 Aligned_cols=323 Identities=14% Similarity=0.057 Sum_probs=207.7
Q ss_pred HhhCCCCcEEecCCCCCCChH-----------------HHHHhh--cCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEE
Q 012414 118 ARACPLLESVDLSYCCGFGDR-----------------EAAALS--FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERL 178 (464)
Q Consensus 118 ~~~~~~L~~L~l~~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 178 (464)
...+++|++|+++++. ++.. ....+. .+++|++|+++++. +.......+ ..+++|++|
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFL-KALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTT-TTCSSCCEE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHHH-hcCCCCCEE
Confidence 4478899999999876 5542 344555 78999999998853 222222223 348899999
Q ss_pred eccCCCccCH-HHHHHHHh-----cCCCCcEEEccCcccChhHHH--HhhcccCCceeEecCCCCCC-hhHHHHHHhcCC
Q 012414 179 SLKWCMEISD-LGIDLLCK-----KCLDLKSLDVSYLKLTNDSFC--SIATLAKLESLVMVGCPCVD-DTGLRFLESGCP 249 (464)
Q Consensus 179 ~l~~~~~~~~-~~~~~l~~-----~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~ 249 (464)
+++++..++. .....+.. .+++|+.|++++|.++ .... .+..+++|++|+++++. +. ... .+ ..++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip--~~-~~l~ 353 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ-LEGKLP--AF-GSEI 353 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC-CEEECC--CC-EEEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc-Cccchh--hh-CCCC
Confidence 9998843665 33333322 3489999999999777 3333 67889999999998754 33 211 22 2368
Q ss_pred CCceeecccccccChhHHHHHHhcCCC-CcEEeccCCCccccHHHHHHHhc--CCCCcEEEcCCCCCChHHHHHHH----
Q 012414 250 LLKTIFVSRCKFVSSTGLISVIRGHSG-LLQLDAGHCFSELSTTLLHHMRD--LKNLEAITMDGARISDSCFQTIS---- 322 (464)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~---- 322 (464)
+|+.|+++++. +. .+...+..+++ |++|+++++.. . .....+.. +++|+.|++++|.+.......+.
T Consensus 354 ~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l--~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 354 KLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKL--K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCC--S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcC--c-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 89999998864 22 22223455777 99999998863 3 22233333 34899999999977553221111
Q ss_pred --HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhc-------CCCCcEEeccCCCCCcH
Q 012414 323 --FNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADS-------CRGLVCLKIESCNMITE 393 (464)
Q Consensus 323 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~-------~~~L~~L~l~~~~~~~~ 393 (464)
..+++|+.|+++++ .+... ...+...+++|+.|+++++ .++.... ..... +++|+.|++++|. ++.
T Consensus 428 ~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 502 (636)
T 4eco_A 428 TPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGN-MLTEIPK-NSLKDENENFKNTYLLTSIDLRFNK-LTK 502 (636)
T ss_dssp SCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSS-CCSBCCS-SSSEETTEECTTGGGCCEEECCSSC-CCB
T ss_pred ccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCC-CCCCcCH-HHhccccccccccCCccEEECcCCc-CCc
Confidence 03468999999985 45422 2233446899999999985 4442110 01111 2289999999876 552
Q ss_pred HHHHHHH--hcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCcc-----CCChHHHHHHHhcCcccceeeecC
Q 012414 394 KGLYQLG--SFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCE-----NISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 394 ~~~~~l~--~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~-----~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+.... ..+++|+.|++++ +.++. ....+..+++|+.|++++|. .+... +...+..+++|+.|++++
T Consensus 503 --lp~~~~~~~l~~L~~L~Ls~-N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 503 --LSDDFRATTLPYLVGIDLSY-NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp --CCGGGSTTTCTTCCEEECCS-SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCS
T ss_pred --cChhhhhccCCCcCEEECCC-CCCCC-cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCC
Confidence 22222 2689999999999 57775 33556789999999996542 22211 112235789999999874
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=3.8e-21 Score=177.35 Aligned_cols=306 Identities=14% Similarity=0.077 Sum_probs=215.2
Q ss_pred hCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCC
Q 012414 120 ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL 199 (464)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 199 (464)
.+++++.|++.++. ++......+..+++|++|+++++ .++......+ ..+++|++|+++++ .+..... .....++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFN-AIRYLPP-HVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCC-cccccChhhc-cCCCCcCEEECCCC-CCCcCCH-HHhcCCC
Confidence 46899999999864 55555556778999999999984 4554332233 34899999999987 4443211 1224689
Q ss_pred CCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcE
Q 012414 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (464)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (464)
+|+.|++++|.+.......+..+++|++|+++++. +.......+ ..+++|++|+++++. +.... ...+++|++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~~ 190 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD----LSLIPSLFH 190 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCC----GGGCTTCSE
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCccc----cccccccce
Confidence 99999999998775444446789999999999854 433222222 347999999999864 33322 345789999
Q ss_pred EeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEec
Q 012414 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDL 359 (464)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 359 (464)
|+++++.. . .+...++|+.|+++++.+..... ...++|+.|+++++. +.+. .....+++|++|++
T Consensus 191 L~l~~n~l--~-----~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 191 ANVSYNLL--S-----TLAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDL 255 (390)
T ss_dssp EECCSSCC--S-----EEECCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSC-CCCC---GGGGGCTTCSEEEC
T ss_pred eecccccc--c-----ccCCCCcceEEECCCCeeeeccc----cccccccEEECCCCC-Cccc---HHHcCCCCccEEEC
Confidence 99998763 2 23445689999999998655422 245789999999864 5543 23457899999999
Q ss_pred cCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCc
Q 012414 360 TCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 439 (464)
Q Consensus 360 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~ 439 (464)
+++ .++......+ ..+++|+.|+++++. ++... .....+++|+.|++++| .++... ..+..+++|+.|++++|
T Consensus 256 s~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 256 SYN-ELEKIMYHPF-VKMQRLERLYISNNR-LVALN--LYGQPIPTLKVLDLSHN-HLLHVE-RNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CSS-CCCEEESGGG-TTCSSCCEEECCSSC-CCEEE--CSSSCCTTCCEEECCSS-CCCCCG-GGHHHHTTCSEEECCSS
T ss_pred CCC-cCCCcChhHc-cccccCCEEECCCCc-CcccC--cccCCCCCCCEEECCCC-cceecC-ccccccCcCCEEECCCC
Confidence 986 5554322222 368999999999976 44321 12236799999999995 776432 33557899999999999
Q ss_pred cCCChHHHHHHHhcCcccceeeecC
Q 012414 440 ENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 440 ~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
.++... ...+++|+.|++++
T Consensus 329 -~i~~~~----~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 329 -SIVTLK----LSTHHTLKNLTLSH 348 (390)
T ss_dssp -CCCCCC----CCTTCCCSEEECCS
T ss_pred -ccceeC----chhhccCCEEEcCC
Confidence 666543 46789999999874
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=5.4e-22 Score=200.57 Aligned_cols=379 Identities=13% Similarity=0.037 Sum_probs=196.3
Q ss_pred HhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHH
Q 012414 61 LDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREA 140 (464)
Q Consensus 61 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 140 (464)
+..+++|+.|+++++.......... ....++|+.|+++++. +.... +.....+++|++|+++++. +++...
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~------f~~L~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~Ls~n~-l~~~~~ 114 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEA------FRNLPNLRILDLGSSK-IYFLH-PDAFQGLFHLFELRLYFCG-LSDAVL 114 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTT------TSSCTTCCEEECTTCC-CCEEC-TTSSCSCSSCCCEECTTCC-CSSCCS
T ss_pred CcccccCeEEeCCCCCCccccCHHH------hcCCCCCCEEECCCCc-CcccC-HhHccCCcccCEeeCcCCC-CCcccc
Confidence 4567888888888864332221111 3456788888888773 32211 1223367888888888764 333222
Q ss_pred H--HhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCH---HHHHHHHhcCCCCcEEEccCcccChhH
Q 012414 141 A--ALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISD---LGIDLLCKKCLDLKSLDVSYLKLTNDS 215 (464)
Q Consensus 141 ~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~~~~~~ 215 (464)
. .+..+++|++|+++++ .++..........+++|++|+++++ .+.. ..+..+.. ++|+.|+++.|.+....
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQG--KTLSFFSLAANSLYSRV 190 (844)
T ss_dssp TTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHH--CSSCCCEECCSBSCCCC
T ss_pred cCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccC--CccceEECCCCcccccc
Confidence 2 2667888888888874 3433222223345888888888876 3321 22222211 56666666665444322
Q ss_pred HHHhhccc------CCceeEecCCCCCChh------------------------------------HHHHHHh-cCCCCc
Q 012414 216 FCSIATLA------KLESLVMVGCPCVDDT------------------------------------GLRFLES-GCPLLK 252 (464)
Q Consensus 216 ~~~l~~~~------~L~~L~l~~~~~~~~~------------------------------------~~~~l~~-~~~~L~ 252 (464)
...+..++ +|+.|+++++. +... ....+.. ..++|+
T Consensus 191 ~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~ 269 (844)
T 3j0a_A 191 SVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269 (844)
T ss_dssp CCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC
T ss_pred ccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc
Confidence 22222222 25555555431 1100 0000000 025677
Q ss_pred eeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEe
Q 012414 253 TIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIG 332 (464)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 332 (464)
.|+++++. +... ....+..+++|+.|+++++. +.......+..+++|+.|++++|.+.......+ ..+++|+.|+
T Consensus 270 ~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ 344 (844)
T 3j0a_A 270 HLDLSHGF-VFSL-NSRVFETLKDLKVLNLAYNK--INKIADEAFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYID 344 (844)
T ss_dssp EEECTTCC-CCEE-CSCCSSSCCCCCEEEEESCC--CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEE
T ss_pred EEECCCCc-cccc-ChhhhhcCCCCCEEECCCCc--CCCCChHHhcCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEE
Confidence 77776643 2111 11123345677777776665 333333345566677777777665443221112 1456667777
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHH--------------HHHHhcCCCCcEEeccCCCCCcHHHHHH
Q 012414 333 LSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAI--------------SAIADSCRGLVCLKIESCNMITEKGLYQ 398 (464)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------------~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 398 (464)
++++ .+...... ....+++|+.|+++++ .++.... ..+.....+++.|+++++. ++..+...
T Consensus 345 L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~-l~~l~~~~ 420 (844)
T 3j0a_A 345 LQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN-ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR-LENLDILY 420 (844)
T ss_dssp CCSC-CCCCCCSS-CSCSCCCCCEEEEETC-CSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC-CCSSTTHH
T ss_pred CCCC-CCCccChh-hhcCCCCCCEEECCCC-CCCcccCCCCcchhccCCCCcccccccccccceeecccCc-cccCchhh
Confidence 6654 23221111 1124566666666654 2221000 0011122345555555543 33333333
Q ss_pred HHhcCCCccEEecCCCCCCChHHHH-HhhcCCCccEEecCCccCCChHH----HHHHHhcCcccceeeecC
Q 012414 399 LGSFCLRLEEIDLTDCNGVNDKGLE-YLSRCSELLFLKLGLCENISDKG----LFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 399 l~~~~~~L~~L~l~~c~~i~~~~~~-~l~~~~~L~~L~l~~~~~i~~~~----~~~~~~~~~~L~~l~l~~ 464 (464)
....+++|+.|++++ +.++..... .+..+++|+.|++++| .++... ....+.++++|+.|++++
T Consensus 421 ~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 421 FLLRVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp HHTTCTTCCEEEEES-CCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred hhhcCCccceeeCCC-CcccccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCC
Confidence 444789999999999 577643221 2335899999999999 554211 011235678999998863
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=3.4e-19 Score=166.69 Aligned_cols=307 Identities=15% Similarity=0.117 Sum_probs=167.5
Q ss_pred hCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHH
Q 012414 63 KYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAA 142 (464)
Q Consensus 63 ~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 142 (464)
.+++++.|+++++ .+.... . ....++|++|+++++. +.... ...+++|++|+++++. ++.. .
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~--~------l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~---~ 101 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMT--G------IEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNL---D 101 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCT--T------GGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCC---C
T ss_pred HcCCCCEEEccCC-CcccCh--h------hcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Ccee---e
Confidence 4577888888774 343321 1 2345778888887763 32211 3367778888887764 3332 2
Q ss_pred hhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCc-ccChhHHHHhhc
Q 012414 143 LSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYL-KLTNDSFCSIAT 221 (464)
Q Consensus 143 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~ 221 (464)
+..+++|++|+++++ .++... ...+++|++|+++++ .++... ...+++|+.|++++| .+... .+..
T Consensus 102 ~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~~ 168 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKL---DVTP 168 (457)
T ss_dssp CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCC---CCTT
T ss_pred cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCccccc---cccc
Confidence 566777777777763 444321 234677777777766 333221 235677777777777 33222 3555
Q ss_pred ccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCC
Q 012414 222 LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLK 301 (464)
Q Consensus 222 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 301 (464)
+++|+.|+++++. +.... ...+++|+.|+++++. +.... +..+++|++|+++++.. ... . +..++
T Consensus 169 l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N~l--~~i--p-~~~l~ 233 (457)
T 3bz5_A 169 QTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSNKL--TEI--D-VTPLT 233 (457)
T ss_dssp CTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSSCC--SCC--C-CTTCT
T ss_pred CCcCCEEECCCCc-cceec----cccCCCCCEEECcCCc-CCeec----cccCCCCCEEECcCCcc--ccc--C-ccccC
Confidence 6777777777643 33321 2236777777776653 22221 33466777777776653 221 1 55667
Q ss_pred CCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCc
Q 012414 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381 (464)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 381 (464)
+|+.|++++|.+..... ..+++|+.|+++.+ +|+.|++++|....... ...+++|+
T Consensus 234 ~L~~L~l~~N~l~~~~~----~~l~~L~~L~l~~n----------------~L~~L~l~~n~~~~~~~----~~~l~~L~ 289 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDV----STLSKLTTLHCIQT----------------DLLEIDLTHNTQLIYFQ----AEGCRKIK 289 (457)
T ss_dssp TCSEEECCSSCCSCCCC----TTCTTCCEEECTTC----------------CCSCCCCTTCTTCCEEE----CTTCTTCC
T ss_pred CCCEEEeeCCcCCCcCH----HHCCCCCEEeccCC----------------CCCEEECCCCccCCccc----ccccccCC
Confidence 77777777776554321 24455555554331 23333444332211110 11345555
Q ss_pred EEeccCCCCCcHHH-----HHH-HHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCCh
Q 012414 382 CLKIESCNMITEKG-----LYQ-LGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 444 (464)
Q Consensus 382 ~L~l~~~~~~~~~~-----~~~-l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~ 444 (464)
.|++++|+.+.... +.. -...+++|+.|++++ +.++.. .+..+++|+.|++++| ++++
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l---~l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTEL---DVSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCC---CCTTCTTCSEEECCSS-CCCB
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Cccccc---ccccCCcCcEEECCCC-CCCC
Confidence 55555543211100 000 012347888888888 577663 2667888888888888 5554
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=1.6e-20 Score=186.85 Aligned_cols=323 Identities=14% Similarity=0.062 Sum_probs=208.5
Q ss_pred HhhCCCCcEEecCCCCCCCh-----------------HHHHHhh--cCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEE
Q 012414 118 ARACPLLESVDLSYCCGFGD-----------------REAAALS--FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERL 178 (464)
Q Consensus 118 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 178 (464)
...+++|++|+++++. ++. ..+..+. .+++|++|+++++. +.......+ ..+++|+.|
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l-~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-NMTQLPDFL-YDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-TCCSCCGGG-GGCSSCCEE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-CCccChHHH-hCCCCCCEE
Confidence 4478999999999876 454 1334444 88999999998853 222222223 348999999
Q ss_pred eccCCCccCH-HHHHHHH------hcCCCCcEEEccCcccChhHHH--HhhcccCCceeEecCCCCCChhHHHHHHhcCC
Q 012414 179 SLKWCMEISD-LGIDLLC------KKCLDLKSLDVSYLKLTNDSFC--SIATLAKLESLVMVGCPCVDDTGLRFLESGCP 249 (464)
Q Consensus 179 ~l~~~~~~~~-~~~~~l~------~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 249 (464)
+++++..++. .....+. ..+++|+.|++++|.+. .... .+.++++|+.|+++++. +.. +..+ ..++
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~--lp~~-~~L~ 595 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRH--LEAF-GTNV 595 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCB--CCCC-CTTS
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-ccc--chhh-cCCC
Confidence 9998843665 2222221 24569999999999777 3333 68889999999999854 442 2222 3378
Q ss_pred CCceeecccccccChhHHHHHHhcCCC-CcEEeccCCCccccHHHHHHHhcC--CCCcEEEcCCCCCChHHH--H-HHH-
Q 012414 250 LLKTIFVSRCKFVSSTGLISVIRGHSG-LLQLDAGHCFSELSTTLLHHMRDL--KNLEAITMDGARISDSCF--Q-TIS- 322 (464)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~--~-~l~- 322 (464)
+|+.|+++++. +. .+...+..+++ |+.|+++++.. . .....+... ++|+.|++++|.+..... . .+.
T Consensus 596 ~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~L--~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 596 KLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNKL--K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp EESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSCC--C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred cceEEECcCCc-cc--cchHHHhhccccCCEEECcCCCC--C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 99999998865 33 22223455777 99999998863 3 222333333 359999999997654210 0 000
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHH-------hcCCCCcEEeccCCCCCcHHH
Q 012414 323 FNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIA-------DSCRGLVCLKIESCNMITEKG 395 (464)
Q Consensus 323 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-------~~~~~L~~L~l~~~~~~~~~~ 395 (464)
..+++|+.|+++++ .+... ...+...+++|+.|+++++ .++... ..+. .++++|+.|++++|. ++.
T Consensus 670 ~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N-~L~~ip-~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~-- 742 (876)
T 4ecn_A 670 YKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNN-LMTSIP-ENSLKPKDGNYKNTYLLTTIDLRFNK-LTS-- 742 (876)
T ss_dssp CCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSC-CCSCCC-TTSSSCTTSCCTTGGGCCEEECCSSC-CCC--
T ss_pred ccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCC-cCCccC-hHHhccccccccccCCccEEECCCCC-Ccc--
Confidence 12358999999986 45532 2233457899999999985 444211 0011 122389999999975 552
Q ss_pred HHHHH--hcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCcc-----CCChHHHHHHHhcCcccceeeecC
Q 012414 396 LYQLG--SFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCE-----NISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 396 ~~~l~--~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~-----~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+.... ..+++|+.|++++ +.++. ....+..+++|+.|++++|+ .+... +...+..+++|+.|+|++
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~-N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSY-NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCS-SCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCS
T ss_pred chHHhhhccCCCcCEEEeCC-CCCCc-cchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCC
Confidence 22222 2689999999999 57775 23456689999999998743 22211 112236789999999874
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=5.6e-20 Score=177.82 Aligned_cols=167 Identities=11% Similarity=0.102 Sum_probs=118.0
Q ss_pred hcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChH-HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 012414 272 RGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDS-CFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSG 350 (464)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (464)
..+++|++|+++++. +.......+..+++|+.|++++|.+... .+......+++|+.|+++++. +...........
T Consensus 350 ~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV--FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSC--CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCc--cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcC
Confidence 457889999999887 4554556678899999999999988753 223333478999999999864 432111112235
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhcC-CCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCC
Q 012414 351 CVNLKTIDLTCCHSITDDAISAIADSC-RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCS 429 (464)
Q Consensus 351 ~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 429 (464)
+++|++|+++++ .++... ...+ ++|+.|++++|. ++. +..-...+++|+.|++++ +.++......+..++
T Consensus 427 l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N~-l~~--ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~ 497 (562)
T 3a79_B 427 AESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNNR-IMS--IPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLT 497 (562)
T ss_dssp CTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSSC-CCC--CCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCT
T ss_pred cccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCCc-Ccc--cChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCC
Confidence 689999999986 565432 2244 699999999975 552 211122689999999999 688754433467899
Q ss_pred CccEEecCCccCCChHHHHHH
Q 012414 430 ELLFLKLGLCENISDKGLFYI 450 (464)
Q Consensus 430 ~L~~L~l~~~~~i~~~~~~~~ 450 (464)
+|+.|++++|+-..+.....+
T Consensus 498 ~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 498 SLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp TCCCEECCSCCBCCCHHHHHH
T ss_pred CCCEEEecCCCcCCCcchHHH
Confidence 999999999966655555544
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=4.9e-19 Score=165.57 Aligned_cols=302 Identities=15% Similarity=0.103 Sum_probs=199.9
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (464)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (464)
..++|++|+++++. +... +. ...+++|++|+++++. ++.. .+..+++|++|+++++ .++... ...++
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~--~~-l~~l~~L~~L~Ls~n~-l~~~---~~~~l~~L~~L~Ls~N-~l~~~~----~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDM--TG-IEKLTGLTKLICTSNN-ITTL---DLSQNTNLTYLACDSN-KLTNLD----VTPLT 106 (457)
T ss_dssp HHTTCCEEECCSSC-CCCC--TT-GGGCTTCSEEECCSSC-CSCC---CCTTCTTCSEEECCSS-CCSCCC----CTTCT
T ss_pred HcCCCCEEEccCCC-cccC--hh-hcccCCCCEEEccCCc-CCeE---ccccCCCCCEEECcCC-CCceee----cCCCC
Confidence 45789999998873 3321 22 3478899999998875 4443 2677889999999884 454432 33488
Q ss_pred CccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCce
Q 012414 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (464)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (464)
+|++|+++++ .++... ...+++|+.|++++|.++.. .+..+++|++|+++++..++... + ..+++|+.
T Consensus 107 ~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~-~~l~~L~~ 174 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---V-TPQTQLTT 174 (457)
T ss_dssp TCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---C-TTCTTCCE
T ss_pred cCCEEECCCC-cCCeec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---c-ccCCcCCE
Confidence 8899988887 444321 34678888888888876653 36678888888888764444332 2 23688888
Q ss_pred eecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEec
Q 012414 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (464)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (464)
|+++++. +.... +..+++|+.|+++++.. ... .+..+++|+.|++++|.+.... ...+++|+.|++
T Consensus 175 L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~l--~~~---~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l 240 (457)
T 3bz5_A 175 LDCSFNK-ITELD----VSQNKLLNRLNCDTNNI--TKL---DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDC 240 (457)
T ss_dssp EECCSSC-CCCCC----CTTCTTCCEEECCSSCC--SCC---CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEEC
T ss_pred EECCCCc-cceec----cccCCCCCEEECcCCcC--Cee---ccccCCCCCEEECcCCcccccC----ccccCCCCEEEe
Confidence 8888764 33321 34577888888887763 222 3667778888888888766532 236677888888
Q ss_pred CCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCC
Q 012414 334 SKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (464)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 413 (464)
+++ .++... ...+++|+.|++++ .+|+.|++++|..+.... ...|++|+.|++++
T Consensus 241 ~~N-~l~~~~----~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 241 SVN-PLTELD----VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTH 295 (457)
T ss_dssp CSS-CCSCCC----CTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTT
T ss_pred eCC-cCCCcC----HHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc----ccccccCCEEECCC
Confidence 774 343321 23567777777654 257778888776443322 23679999999999
Q ss_pred CCCCChHHH-----H--HhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 414 CNGVNDKGL-----E--YLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 414 c~~i~~~~~-----~--~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
|..+..... . .+..+++|+.|++++| +++... +..|++|+.|++++
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVN 348 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCS
T ss_pred CcccceeccCCCcceEechhhcccCCEEECCCC-cccccc----cccCCcCcEEECCC
Confidence 754322110 0 1446789999999999 666632 47899999999864
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=7.1e-20 Score=178.01 Aligned_cols=319 Identities=16% Similarity=0.104 Sum_probs=203.6
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 94 WTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCV 173 (464)
Q Consensus 94 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 173 (464)
...+++.+++.++. +... ...+...+++|+.|+++++. ++......+..+++|++|+++++ .++..... ....++
T Consensus 49 ~l~~l~~l~l~~~~-l~~l-p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPH-VFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCE-ESEE-CTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred cCCCceEEEeeCCC-CCCc-CHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCC-cCCCCCHH-HHcCCC
Confidence 34677788877652 2211 12234477888888888764 55554556777888899988874 34442222 223488
Q ss_pred CccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCce
Q 012414 174 NLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKT 253 (464)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 253 (464)
+|++|+++++ .++... ..++..+++|+.|++++|.+.......+..+++|+.|+++++. +.... ...+++|+.
T Consensus 124 ~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~ 196 (597)
T 3oja_B 124 LLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFH 196 (597)
T ss_dssp TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC----GGGCTTCSE
T ss_pred CCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC----hhhhhhhhh
Confidence 8899988887 444211 1222467889999999887776555567778889999988754 44322 233788888
Q ss_pred eecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEec
Q 012414 254 IFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGL 333 (464)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 333 (464)
|+++++. +.. +...++|+.|+++++.. .... ....++|+.|++++|.+++. .. ...+++|+.|++
T Consensus 197 L~l~~n~-l~~------l~~~~~L~~L~ls~n~l--~~~~---~~~~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~L 261 (597)
T 3oja_B 197 ANVSYNL-LST------LAIPIAVEELDASHNSI--NVVR---GPVNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDL 261 (597)
T ss_dssp EECCSSC-CSE------EECCTTCSEEECCSSCC--CEEE---CSCCSCCCEEECCSSCCCCC--GG-GGGCTTCSEEEC
T ss_pred hhcccCc-ccc------ccCCchhheeeccCCcc--cccc---cccCCCCCEEECCCCCCCCC--hh-hccCCCCCEEEC
Confidence 8888753 222 12356788888887753 1110 01235888999988877653 22 237788999999
Q ss_pred CCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCC
Q 012414 334 SKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (464)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 413 (464)
+++ .+.......+ ..+++|+.|+++++ .++.. ......+++|+.|++++|. ++.. ......+++|+.|++++
T Consensus 262 s~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i--~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 262 SYN-ELEKIMYHPF-VKMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHNH-LLHV--ERNQPQFDRLENLYLDH 333 (597)
T ss_dssp CSS-CCCEEESGGG-TTCSSCCEEECTTS-CCCEE--ECSSSCCTTCCEEECCSSC-CCCC--GGGHHHHTTCSEEECCS
T ss_pred CCC-ccCCCCHHHh-cCccCCCEEECCCC-CCCCC--CcccccCCCCcEEECCCCC-CCcc--CcccccCCCCCEEECCC
Confidence 885 4544322222 36788999999885 44431 1112247899999998876 4421 11123568899999998
Q ss_pred CCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHh
Q 012414 414 CNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIAS 452 (464)
Q Consensus 414 c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~ 452 (464)
+.++... +..+++|+.|++++| .+.......+..
T Consensus 334 -N~l~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~ 367 (597)
T 3oja_B 334 -NSIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFR 367 (597)
T ss_dssp -SCCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTT
T ss_pred -CCCCCcC---hhhcCCCCEEEeeCC-CCCChhHHHHHH
Confidence 4666543 556889999999998 566555555544
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=3.3e-20 Score=180.32 Aligned_cols=306 Identities=14% Similarity=0.081 Sum_probs=215.2
Q ss_pred hCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCC
Q 012414 120 ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCL 199 (464)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 199 (464)
.+++++.+++.++. ++......+..+++|++|+++++ .++......+. .+++|++|+++++ .++.... ..+..++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFA-YAHTIQKLYMGFN-AIRYLPP-HVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTT-TCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhc-CCCCCCEEECCCC-cCCCCCH-HHHcCCC
Confidence 46789999999864 45555556778999999999984 55543333333 4899999999987 4443221 1224689
Q ss_pred CCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcE
Q 012414 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (464)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (464)
+|+.|++++|.++......+..+++|++|+++++. +.......+ ..+++|+.|+++++. +.... ...+++|+.
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~ 196 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD----LSLIPSLFH 196 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCC----GGGCTTCSE
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcC----hhhhhhhhh
Confidence 99999999998775444446789999999999864 443222223 337999999999864 33322 345789999
Q ss_pred EeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEec
Q 012414 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDL 359 (464)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 359 (464)
|+++++.. . .+...++|+.|++++|.+..... ...++|+.|+++++. +++. ..+..+++|+.|++
T Consensus 197 L~l~~n~l--~-----~l~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~L 261 (597)
T 3oja_B 197 ANVSYNLL--S-----TLAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDL 261 (597)
T ss_dssp EECCSSCC--S-----EEECCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEEC
T ss_pred hhcccCcc--c-----cccCCchhheeeccCCccccccc----ccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEEC
Confidence 99998763 2 23456789999999997654321 134789999999864 5542 23457899999999
Q ss_pred cCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCc
Q 012414 360 TCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 439 (464)
Q Consensus 360 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~ 439 (464)
+++ .++......+. .+++|+.|++++|. ++.. ......+++|+.|++++| .++... ..+..+++|+.|++++|
T Consensus 262 s~N-~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~l--~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 262 SYN-ELEKIMYHPFV-KMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHN-HLLHVE-RNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CSS-CCCEEESGGGT-TCSSCCEEECTTSC-CCEE--ECSSSCCTTCCEEECCSS-CCCCCG-GGHHHHTTCSEEECCSS
T ss_pred CCC-ccCCCCHHHhc-CccCCCEEECCCCC-CCCC--CcccccCCCCcEEECCCC-CCCccC-cccccCCCCCEEECCCC
Confidence 986 55543222232 68999999999976 4432 122235799999999994 776432 34567899999999999
Q ss_pred cCCChHHHHHHHhcCcccceeeecC
Q 012414 440 ENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 440 ~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
.++... ...+++|+.|++++
T Consensus 335 -~l~~~~----~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 335 -SIVTLK----LSTHHTLKNLTLSH 354 (597)
T ss_dssp -CCCCCC----CCTTCCCSEEECCS
T ss_pred -CCCCcC----hhhcCCCCEEEeeC
Confidence 565543 36789999999874
No 47
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=1.8e-16 Score=144.21 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=6.7
Q ss_pred CCCcEEEccCcccC
Q 012414 199 LDLKSLDVSYLKLT 212 (464)
Q Consensus 199 ~~L~~L~l~~~~~~ 212 (464)
++|++|++++|.++
T Consensus 80 ~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 80 ANVTSLNLSGNFLS 93 (362)
T ss_dssp TTCCEEECCSSCGG
T ss_pred CCccEEECcCCcCC
Confidence 44555555544443
No 48
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=3.8e-16 Score=142.05 Aligned_cols=257 Identities=13% Similarity=0.113 Sum_probs=175.3
Q ss_pred eccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHH----HHhhccc-CCceeEecCCCCCChhHHHHHHh---c-CC
Q 012414 179 SLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSF----CSIATLA-KLESLVMVGCPCVDDTGLRFLES---G-CP 249 (464)
Q Consensus 179 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~---~-~~ 249 (464)
+++.+ .++. .+..+....++|++|++++|.+++... ..+..++ +|++|+++++ .+++.+...+.. . ++
T Consensus 4 ~ls~n-~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 4 KLTLH-PGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp ECCCC-TTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCT
T ss_pred ccccc-cchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCC
Confidence 44444 3332 234445456679999999998877665 5566788 8999999986 465544443333 2 38
Q ss_pred CCceeecccccccCh---hHHHHHHhcC-CCCcEEeccCCCccccHHHH----HHHhc-CCCCcEEEcCCCCCChHHHHH
Q 012414 250 LLKTIFVSRCKFVSS---TGLISVIRGH-SGLLQLDAGHCFSELSTTLL----HHMRD-LKNLEAITMDGARISDSCFQT 320 (464)
Q Consensus 250 ~L~~L~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~~~-~~~L~~L~l~~~~~~~~~~~~ 320 (464)
+|++|+++++. +++ ..+...+..+ ++|++|+++++. +..... ..+.. .++|+.|++++|.+++.+...
T Consensus 81 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 99999999875 433 3444555555 899999999987 343333 33445 369999999999887655544
Q ss_pred HH---HhCC-CCcEEecCCCCCCCHHHH---HHHHhcC-CCCcEEeccCCCCCChHHHHHHHh---c-CCCCcEEeccCC
Q 012414 321 IS---FNCK-SLVEIGLSKCLGVTNTGI---TQLVSGC-VNLKTIDLTCCHSITDDAISAIAD---S-CRGLVCLKIESC 388 (464)
Q Consensus 321 l~---~~~~-~L~~L~l~~~~~~~~~~~---~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~---~-~~~L~~L~l~~~ 388 (464)
+. ...+ +|++|++++| .+++.+. ...+..+ ++|++|++++| .+++.+...+.. . .++|++|++++|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 43 2444 8999999986 4654443 3334456 49999999986 577644433332 2 469999999997
Q ss_pred CCCcHHHH---HHHHhcCCCccEEecCCCC--CCChHHHHHhh----cCCCccEEecCCccCCChH
Q 012414 389 NMITEKGL---YQLGSFCLRLEEIDLTDCN--GVNDKGLEYLS----RCSELLFLKLGLCENISDK 445 (464)
Q Consensus 389 ~~~~~~~~---~~l~~~~~~L~~L~l~~c~--~i~~~~~~~l~----~~~~L~~L~l~~~~~i~~~ 445 (464)
. +++.+. ..+...+++|+.|++++|. .+++..+..+. .+++|+.|++++| .+.+.
T Consensus 236 ~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 236 C-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp C-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred C-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 6 776544 3444567899999999952 36666666554 4788999999999 66655
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=1.3e-19 Score=178.62 Aligned_cols=133 Identities=19% Similarity=0.081 Sum_probs=65.5
Q ss_pred CceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhc
Q 012414 66 YIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSF 145 (464)
Q Consensus 66 ~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 145 (464)
.+++|++++ ..++...... ....++|++|+++++. +..... .....+++|++|+++++. ++......+..
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~------f~~l~~L~~L~Ls~N~-i~~i~~-~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYS------FFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTT-SCCCEECTTT------TTTCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECGGGGTT
T ss_pred CCCEEEeeC-CCCCCCCHHH------HhCCCCCCEEECCCCc-CCCcCh-hHhcCCCCCCEEEccCCc-CCCCCHHHhcC
Confidence 467777766 3343322111 2345667777776652 221111 112356677777777653 44443444566
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCccc
Q 012414 146 ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKL 211 (464)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 211 (464)
+++|++|+++++ .++...... ...+++|++|+++++ .+...........+++|+.|++++|.+
T Consensus 123 L~~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 123 LSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCC-cCCCCChhh-hhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccc
Confidence 667777777663 333211111 123666666666665 232211122233456666666666643
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.9e-17 Score=149.10 Aligned_cols=260 Identities=18% Similarity=0.180 Sum_probs=125.7
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCc
Q 012414 147 SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLE 226 (464)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 226 (464)
++|++|++++ ..++......+ ..+++|++|+++++ .++..... ....+++|++|++++|.++......+..+++|+
T Consensus 52 ~~L~~L~l~~-n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSN-NRITYISNSDL-QRCVNLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTT-SCCCEECTTTT-TTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCC-CcCcccCHHHh-ccCCCCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 5788888887 34443222222 23677777777765 33321111 122456677777777665544444455666666
Q ss_pred eeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEE
Q 012414 227 SLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAI 306 (464)
Q Consensus 227 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 306 (464)
+|+++++. +...........+++|++|+++++..+ .......+..+++|+.|
T Consensus 128 ~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~---------------------------~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTF---------------------------TKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC---------------------------CEECTTTTTTCCEEEEE
T ss_pred EEECCCCC-CcccCchhhhccCCCCcEEECCCCccc---------------------------cccCHHHccCCCCCCEE
Confidence 66666532 221110001122455555555543211 11111223344445555
Q ss_pred EcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHH--HHhcCCCCcEEe
Q 012414 307 TMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISA--IADSCRGLVCLK 384 (464)
Q Consensus 307 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~~~~~L~~L~ 384 (464)
++++|.+.......+. .+++|++|+++++. +.... ..+...+++|+.|+++++ .++...... .....+.++.++
T Consensus 180 ~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 180 EIDASDLQSYEPKSLK-SIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEETTCCEECTTTTT-TCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEE
T ss_pred ECCCCCcCccCHHHHh-ccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCC-ccccccccccccccccchhhccc
Confidence 5544443322111111 34555555555532 32211 112223555666666553 222211110 112355677777
Q ss_pred ccCCCCCcHHHHHHH---HhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCCh
Q 012414 385 IESCNMITEKGLYQL---GSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 444 (464)
Q Consensus 385 l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~ 444 (464)
+.++. +++.++..+ ...+++|+.|++++ +.++......+..+++|+.|++++|+-..+
T Consensus 256 L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 256 FRNVK-ITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp EESCB-CCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccc-ccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 76654 555544433 34567788888877 466644333345678888888888854444
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=6.9e-17 Score=144.10 Aligned_cols=151 Identities=15% Similarity=0.010 Sum_probs=81.0
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCC
Q 012414 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (464)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 379 (464)
+++|+.|++++|.+.......+ ..+++|+.|+++++ .+.......+...+++|++|+++++ .++.. ... ..+++
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~-~~l~~ 192 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VVFAK 192 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CCCTT
T ss_pred cCCCCEEECCCCCCCCccchhh-hccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--ccc-ccccc
Confidence 4556666666665544322112 14566666666663 3443333333334566777776664 33322 000 13567
Q ss_pred CcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccce
Q 012414 380 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQG 459 (464)
Q Consensus 380 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 459 (464)
|++|++++|. ++..... ...+++|+.|++++ +.++.. ...+..+++|+.|++++| .+....+...+..+++|+.
T Consensus 193 L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~L~~-N~l~~l-~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 193 LKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRN-NKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp CCEEECCSSC-CCEECGG--GGGGTTCSEEECTT-SCCCEE-CTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHH
T ss_pred CCEEECCCCc-CCcchhh--hcccCcccEEECcC-Ccccch-hhHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceE
Confidence 7777777654 3322111 23567777777777 466532 223445677777777777 5554455555566676666
Q ss_pred eee
Q 012414 460 LDL 462 (464)
Q Consensus 460 l~l 462 (464)
+++
T Consensus 267 l~l 269 (317)
T 3o53_A 267 VAK 269 (317)
T ss_dssp HHH
T ss_pred EEC
Confidence 654
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=1.8e-17 Score=149.07 Aligned_cols=270 Identities=15% Similarity=0.123 Sum_probs=119.6
Q ss_pred CCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCC
Q 012414 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (464)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 201 (464)
++++.|+++++. ++......+..+++|++|+++++ .++......+ ..+++|++|+++++ .++.... ...++|
T Consensus 52 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~l~~----~~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN-KISKISPGAF-APLVKLERLYLSKN-QLKELPE----KMPKTL 123 (330)
T ss_dssp TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSS-CCSBCCS----SCCTTC
T ss_pred CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC-cCCeeCHHHh-cCCCCCCEEECCCC-cCCccCh----hhcccc
Confidence 345555555442 33322233445555666665552 2332211112 12556666666554 2221000 012566
Q ss_pred cEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhH-HHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEE
Q 012414 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTG-LRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL 280 (464)
Q Consensus 202 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 280 (464)
++|++++|.+.......+..+++|+.|+++++. +...+ .......+++|+.|+++++. +... .. ...++|++|
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l--~~--~~~~~L~~L 197 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN-ITTI--PQ--GLPPSLTEL 197 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC-CCSC--CS--SCCTTCSEE
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc-cccC--Cc--cccccCCEE
Confidence 777776666655555556666666666666543 22111 00111225566666665542 1110 00 001345555
Q ss_pred eccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEecc
Q 012414 281 DAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLT 360 (464)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (464)
+++++. +.......+..+++|+.|++++|.+....... ...+++|++|+++
T Consensus 198 ~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------------------------~~~l~~L~~L~L~ 248 (330)
T 1xku_A 198 HLDGNK--ITKVDAASLKGLNNLAKLGLSFNSISAVDNGS---------------------------LANTPHLRELHLN 248 (330)
T ss_dssp ECTTSC--CCEECTGGGTTCTTCCEEECCSSCCCEECTTT---------------------------GGGSTTCCEEECC
T ss_pred ECCCCc--CCccCHHHhcCCCCCCEEECCCCcCceeChhh---------------------------ccCCCCCCEEECC
Confidence 555443 22222223334444444444444332211111 1234555555555
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHH-----hcCCCccEEecCCCCCCChHHH--HHhhcCCCccE
Q 012414 361 CCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLG-----SFCLRLEEIDLTDCNGVNDKGL--EYLSRCSELLF 433 (464)
Q Consensus 361 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~~L~~L~l~~c~~i~~~~~--~~l~~~~~L~~ 433 (464)
++ .++. +......+++|+.|++++|+ ++..+...+. ...+.++.|++.+ +.+....+ ..+..+++++.
T Consensus 249 ~N-~l~~--lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~-N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 249 NN-KLVK--VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS-NPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp SS-CCSS--CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS-SSSCGGGSCGGGGTTCCCGGG
T ss_pred CC-cCcc--CChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeec-CcccccccCccccccccceeE
Confidence 53 2221 10111245666666666654 3332221111 1236778888887 55543222 34455788888
Q ss_pred EecCCc
Q 012414 434 LKLGLC 439 (464)
Q Consensus 434 L~l~~~ 439 (464)
+++++|
T Consensus 324 l~L~~N 329 (330)
T 1xku_A 324 VQLGNY 329 (330)
T ss_dssp EEC---
T ss_pred EEeccc
Confidence 888876
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=1.6e-17 Score=163.71 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=75.1
Q ss_pred HHhhCCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHH
Q 012414 60 LLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDRE 139 (464)
Q Consensus 60 ~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 139 (464)
.+..+++|+.|+++++. +....... ....++|++|+++++. +..... .....+++|++|+++++. ++...
T Consensus 71 ~f~~l~~L~~L~Ls~N~-i~~i~~~~------f~~L~~L~~L~Ls~N~-l~~l~~-~~f~~L~~L~~L~Ls~N~-l~~l~ 140 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCE-IQTIEDGA------YQSLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVETN-LASLE 140 (635)
T ss_dssp TTTTCTTCCEEECTTCC-CCEECTTT------TTTCTTCCEEECTTCC-CCEECG-GGGTTCTTCCEEECTTSC-CCCST
T ss_pred HHhCCCCCCEEECCCCc-CCCcChhH------hcCCCCCCEEEccCCc-CCCCCH-HHhcCCCCCCEEECCCCc-CCCCC
Confidence 45678899999999853 44322211 3456899999999874 332111 223478999999999874 44444
Q ss_pred HHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCC
Q 012414 140 AAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWC 183 (464)
Q Consensus 140 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (464)
...++.+++|++|+++++ .+...........+++|++|+++++
T Consensus 141 ~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence 345778899999999883 4443222333445889999998876
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=2.8e-17 Score=147.77 Aligned_cols=247 Identities=16% Similarity=0.086 Sum_probs=142.0
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (464)
+++|++|++++|.+.......+..+++|++|+++++. +..... ...++|++|+++++. +.... ...+..+++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~----~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 147 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPE----KMPKTLQELRVHENE-ITKVR-KSVFNGLNQM 147 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCS----SCCTTCCEEECCSSC-CCBBC-HHHHTTCTTC
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccCh----hhcccccEEECCCCc-ccccC-HhHhcCCccc
Confidence 4455555555554443333334455555555555432 221000 112566666666543 22211 1233456777
Q ss_pred cEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEE
Q 012414 278 LQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTI 357 (464)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 357 (464)
++|+++++...........+..+++|+.|+++++.+..... ...++|+.|+++++ .+....... ...+++|++|
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~----~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L 221 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELHLDGN-KITKVDAAS-LKGLNNLAKL 221 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS----SCCTTCSEEECTTS-CCCEECTGG-GTTCTTCCEE
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc----cccccCCEEECCCC-cCCccCHHH-hcCCCCCCEE
Confidence 77777766520011223456677788888888776543211 12378999999885 354432222 2467899999
Q ss_pred eccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhc------CCCc
Q 012414 358 DLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR------CSEL 431 (464)
Q Consensus 358 ~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~------~~~L 431 (464)
+++++ .++......+ ..+++|++|++++|. ++. +......+++|+.|++++ +.++......+.. .+.|
T Consensus 222 ~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 222 GLSFN-SISAVDNGSL-ANTPHLRELHLNNNK-LVK--VPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp ECCSS-CCCEECTTTG-GGSTTCCEEECCSSC-CSS--CCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCC
T ss_pred ECCCC-cCceeChhhc-cCCCCCCEEECCCCc-Ccc--CChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccc
Confidence 99985 4554322222 368999999999986 442 212234689999999999 5887665555532 4789
Q ss_pred cEEecCCccCCChHHH-HHHHhcCcccceeeecC
Q 012414 432 LFLKLGLCENISDKGL-FYIASNCLRIQGLDLYK 464 (464)
Q Consensus 432 ~~L~l~~~~~i~~~~~-~~~~~~~~~L~~l~l~~ 464 (464)
+.+++.+|+ +....+ ......+++++.+++++
T Consensus 296 ~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 296 SGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp SEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC--
T ss_pred cceEeecCc-ccccccCccccccccceeEEEecc
Confidence 999999995 432221 12235678899998864
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=7.4e-18 Score=149.89 Aligned_cols=170 Identities=16% Similarity=0.143 Sum_probs=93.9
Q ss_pred cCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 273 GHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCV 352 (464)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 352 (464)
.+++|++|+++++.. ........+..+++|+.|++++|.+.......+ ..+++|+.|+++++ .+.+.........++
T Consensus 99 ~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 99 GLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGN-SFQENFLPDIFTELR 175 (306)
T ss_dssp TCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTC-EEGGGEECSCCTTCT
T ss_pred CCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhc-ccCcCCCEEECCCC-ccccccchhHHhhCc
Confidence 355666666655542 111111334556666666666665432221111 24567777777664 232211122223567
Q ss_pred CCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCC-Cc
Q 012414 353 NLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCS-EL 431 (464)
Q Consensus 353 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~-~L 431 (464)
+|++|+++++ .++......+ ..+++|+.|+++++. ++...... ...+++|+.|++++ +.++......+..++ +|
T Consensus 176 ~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 176 NLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp TCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTT-SCCCBCSSSSCCCCCTTC
T ss_pred CCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCC-CCCcccCHHHHHhhhccC
Confidence 7888888775 4443222222 256788888888765 33322111 23678899999988 577766555666664 89
Q ss_pred cEEecCCccCCChHHHHHH
Q 012414 432 LFLKLGLCENISDKGLFYI 450 (464)
Q Consensus 432 ~~L~l~~~~~i~~~~~~~~ 450 (464)
+.|++++|+-..+.....+
T Consensus 251 ~~L~L~~N~~~~~c~~~~~ 269 (306)
T 2z66_A 251 AFLNLTQNDFACTCEHQSF 269 (306)
T ss_dssp CEEECTTCCEECSGGGHHH
T ss_pred CEEEccCCCeecccChHHH
Confidence 9999998854344333333
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.59 E-value=6.6e-18 Score=151.98 Aligned_cols=269 Identities=14% Similarity=0.119 Sum_probs=117.7
Q ss_pred CCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCC
Q 012414 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (464)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 201 (464)
++|+.|+++++. ++......+..+++|++|+++++ .++......+ ..+++|++|+++++ .++.... ...++|
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~----~~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAF-SPLRKLQKLYISKN-HLVEIPP----NLPSSL 125 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGS-TTCTTCCEEECCSS-CCCSCCS----SCCTTC
T ss_pred CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHh-hCcCCCCEEECCCC-cCCccCc----cccccC
Confidence 345555555432 33222233445555555555552 3332211222 22556666666554 2221000 012567
Q ss_pred cEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHH-HHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEE
Q 012414 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLR-FLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQL 280 (464)
Q Consensus 202 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 280 (464)
++|++++|.+.......+..+++|++|+++++. +...+.. .....+ +|+.|+++++. +... .. ...++|++|
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l--~~--~~~~~L~~L 198 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAK-LTGI--PK--DLPETLNEL 198 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSB-CSSC--CS--SSCSSCSCC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCC-CCcc--Cc--cccCCCCEE
Confidence 777777775554333345566777777776643 3211110 000112 56666665543 1110 00 001345555
Q ss_pred eccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEecc
Q 012414 281 DAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLT 360 (464)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (464)
+++++. +.......+..+++|+.|++++|.+...... ....+++|++|+++
T Consensus 199 ~l~~n~--i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~---------------------------~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 199 HLDHNK--IQAIELEDLLRYSKLYRLGLGHNQIRMIENG---------------------------SLSFLPTLRELHLD 249 (332)
T ss_dssp BCCSSC--CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT---------------------------GGGGCTTCCEEECC
T ss_pred ECCCCc--CCccCHHHhcCCCCCCEEECCCCcCCcCChh---------------------------HhhCCCCCCEEECC
Confidence 555443 2221122233344444444444433221111 11244555555555
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHh-----cCCCccEEecCCCCCCCh--HHHHHhhcCCCccE
Q 012414 361 CCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGS-----FCLRLEEIDLTDCNGVND--KGLEYLSRCSELLF 433 (464)
Q Consensus 361 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~~L~~L~l~~c~~i~~--~~~~~l~~~~~L~~ 433 (464)
++ .++. +......+++|+.|+++++. ++..+...+.. ..+.|+.|++.+ +.+.. ....++..+++|+.
T Consensus 250 ~N-~l~~--lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~-N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 250 NN-KLSR--VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFN-NPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp SS-CCCB--CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCS-SSSCGGGSCGGGGTTBCCSTT
T ss_pred CC-cCee--cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeec-CcccccccCcccccccchhhh
Confidence 53 3331 11111245666666666654 44332222211 135678888887 45542 22234556788888
Q ss_pred EecCCc
Q 012414 434 LKLGLC 439 (464)
Q Consensus 434 L~l~~~ 439 (464)
+++++|
T Consensus 325 l~l~~n 330 (332)
T 2ft3_A 325 IQFGNY 330 (332)
T ss_dssp EEC---
T ss_pred hhcccc
Confidence 888776
No 57
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.59 E-value=1.3e-15 Score=119.49 Aligned_cols=106 Identities=18% Similarity=0.281 Sum_probs=85.4
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhc---CCCccEEecCCCCCCChHHHHHhhcC
Q 012414 352 VNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSF---CLRLEEIDLTDCNGVNDKGLEYLSRC 428 (464)
Q Consensus 352 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~c~~i~~~~~~~l~~~ 428 (464)
..|++|++++|. +++.++..+. .+++|++|++++|..+++.++..+... +++|++|+|++|..++|.++..++.+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 368888888875 8888887774 788888888888888888888888752 56888999988888998888888888
Q ss_pred CCccEEecCCccCCChHH--HHHHHhcCcccce
Q 012414 429 SELLFLKLGLCENISDKG--LFYIASNCLRIQG 459 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~~~~--~~~~~~~~~~L~~ 459 (464)
++|+.|++++|+++++.+ ...+-+.+|+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 899999999998888876 3455567777654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.8e-16 Score=143.91 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=27.6
Q ss_pred cCCCCcEEEccCcccChhHH-HHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccc
Q 012414 197 KCLDLKSLDVSYLKLTNDSF-CSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRC 259 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 259 (464)
.+++|++|++++|.+..... ..+..+++|++|+++++..+.......+ ..+++|++|+++++
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n 184 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDAS 184 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCC
Confidence 45555555555554442221 2244556666666665422222111111 12455555555543
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.57 E-value=4.9e-18 Score=151.08 Aligned_cols=250 Identities=17% Similarity=0.078 Sum_probs=113.2
Q ss_pred CCccEEeccCCCccCHH-HHHHHHhcCCCCcEEEccC-cccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCC
Q 012414 173 VNLERLSLKWCMEISDL-GIDLLCKKCLDLKSLDVSY-LKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPL 250 (464)
Q Consensus 173 ~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 250 (464)
.++++|+++++ .+... .+......+++|+.|++++ +.+.......+.++++|++|+++++. +.......+ ..+++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFL-SQIKT 126 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGG-GGCTT
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHH-hCCCC
Confidence 46777777765 33310 0111223567777777774 54444444456667777777776643 321111112 22666
Q ss_pred CceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCC-CCcEEEcCCCCCChHHHHHHHHhCCCCc
Q 012414 251 LKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLK-NLEAITMDGARISDSCFQTISFNCKSLV 329 (464)
Q Consensus 251 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 329 (464)
|++|+++++.. .. .+...+..+++|++|+++++. +.......+..++ +|+.|++++|.+.......+. .++ |+
T Consensus 127 L~~L~Ls~N~l-~~-~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~ 200 (313)
T 1ogq_A 127 LVTLDFSYNAL-SG-TLPPSISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LA 200 (313)
T ss_dssp CCEEECCSSEE-ES-CCCGGGGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CS
T ss_pred CCEEeCCCCcc-CC-cCChHHhcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-cc
Confidence 77777666432 11 011123345666666666654 3323333445555 666666666654322111111 222 66
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEE
Q 012414 330 EIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEI 409 (464)
Q Consensus 330 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 409 (464)
.|+++++. +... ....+..+++|+.|+++++ .++..... ...+++|++|++++|. ++.... .....+++|+.|
T Consensus 201 ~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L 273 (313)
T 1ogq_A 201 FVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKN-SLAFDLGK--VGLSKNLNGLDLRNNR-IYGTLP-QGLTQLKFLHSL 273 (313)
T ss_dssp EEECCSSE-EEEC-CGGGCCTTSCCSEEECCSS-EECCBGGG--CCCCTTCCEEECCSSC-CEECCC-GGGGGCTTCCEE
T ss_pred EEECcCCc-ccCc-CCHHHhcCCCCCEEECCCC-ceeeecCc--ccccCCCCEEECcCCc-ccCcCC-hHHhcCcCCCEE
Confidence 66665532 2211 1111224455666666553 22211000 1234555555555543 221111 111244555555
Q ss_pred ecCCCCCCChHHHHHhhcCCCccEEecCCcc
Q 012414 410 DLTDCNGVNDKGLEYLSRCSELLFLKLGLCE 440 (464)
Q Consensus 410 ~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~ 440 (464)
++++ +.++.... ....+++|+.+++.+|+
T Consensus 274 ~Ls~-N~l~~~ip-~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 274 NVSF-NNLCGEIP-QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCS-SEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred ECcC-CcccccCC-CCccccccChHHhcCCC
Confidence 5555 34432211 11334555555555554
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=7.7e-17 Score=143.78 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=38.5
Q ss_pred hcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhccc
Q 012414 144 SFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLA 223 (464)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 223 (464)
..+++|++|++++ ..++......+. .+++|++|+++++ .++... . ...+++|+.|++++|.++. +...+
T Consensus 31 ~~~~~L~~L~L~~-n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~Ls~n~l~~-----l~~~~ 99 (317)
T 3o53_A 31 QSAWNVKELDLSG-NPLSQISAADLA-PFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNNYVQE-----LLVGP 99 (317)
T ss_dssp TTGGGCSEEECTT-SCCCCCCHHHHT-TCTTCCEEECTTS-CCEEEE--E-ETTCTTCCEEECCSSEEEE-----EEECT
T ss_pred ccCCCCCEEECcC-CccCcCCHHHhh-CCCcCCEEECCCC-cCCcch--h-hhhcCCCCEEECcCCcccc-----ccCCC
Confidence 3355666666666 334433222332 3666666666655 222100 0 2345666666666664432 12335
Q ss_pred CCceeEecCC
Q 012414 224 KLESLVMVGC 233 (464)
Q Consensus 224 ~L~~L~l~~~ 233 (464)
+|++|+++++
T Consensus 100 ~L~~L~l~~n 109 (317)
T 3o53_A 100 SIETLHAANN 109 (317)
T ss_dssp TCCEEECCSS
T ss_pred CcCEEECCCC
Confidence 5666665553
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=4.8e-15 Score=138.48 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=51.7
Q ss_pred CCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcC-CCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012414 96 RSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFA-SGLKEVKLDKCLNVTDVGLAKIAVRCVN 174 (464)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 174 (464)
+++++|+++++. +.. ++ ...++|++|+++++. ++. +... ++|++|+++++ .++. +.. ...+++
T Consensus 91 ~~L~~L~l~~n~-l~~--lp---~~~~~L~~L~l~~n~-l~~-----l~~~~~~L~~L~L~~n-~l~~--lp~-~~~l~~ 154 (454)
T 1jl5_A 91 PHLESLVASCNS-LTE--LP---ELPQSLKSLLVDNNN-LKA-----LSDLPPLLEYLGVSNN-QLEK--LPE-LQNSSF 154 (454)
T ss_dssp TTCSEEECCSSC-CSS--CC---CCCTTCCEEECCSSC-CSC-----CCSCCTTCCEEECCSS-CCSS--CCC-CTTCTT
T ss_pred CCCCEEEccCCc-CCc--cc---cccCCCcEEECCCCc-cCc-----ccCCCCCCCEEECcCC-CCCC--Ccc-cCCCCC
Confidence 456666666542 111 00 123556666665543 221 1111 45666666653 2332 111 223566
Q ss_pred ccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCC
Q 012414 175 LERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGC 233 (464)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 233 (464)
|++|+++++ .++. +....++|+.|++++|.+... ..+..+++|++|+++++
T Consensus 155 L~~L~l~~N-~l~~-----lp~~~~~L~~L~L~~n~l~~l--~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 155 LKIIDVDNN-SLKK-----LPDLPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSS
T ss_pred CCEEECCCC-cCcc-----cCCCcccccEEECcCCcCCcC--ccccCCCCCCEEECCCC
Confidence 666666554 2221 111234566666666644431 13445556666666553
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.54 E-value=3.5e-16 Score=146.38 Aligned_cols=131 Identities=18% Similarity=0.134 Sum_probs=58.0
Q ss_pred cCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCC
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (464)
.+++|+.|++++|.+.......+..+++|++|++.++..+.......+ ..+++|++|+++++. +.... .+..+++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~---~~~~l~~ 208 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAMCN-LREIP---NLTPLIK 208 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCSSCCEEECTTSC-CSSCC---CCTTCSS
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh-hcccccCeecCCCCc-Ccccc---ccCCCcc
Confidence 345555555555544433333344555555555555433322111111 124555555555542 11100 0223455
Q ss_pred CcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCC
Q 012414 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSK 335 (464)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 335 (464)
|++|+++++. +.......+..+++|+.|++++|.+.......+. .+++|+.|++++
T Consensus 209 L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~ 264 (440)
T 3zyj_A 209 LDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAH 264 (440)
T ss_dssp CCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTT
T ss_pred cCEEECCCCc--cCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCC
Confidence 5555555553 2322233444555555555555544332222221 445555555555
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.54 E-value=4.1e-16 Score=146.45 Aligned_cols=225 Identities=13% Similarity=0.079 Sum_probs=104.2
Q ss_pred CCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCc
Q 012414 123 LLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLK 202 (464)
Q Consensus 123 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 202 (464)
++++|+++++. ++......+..+++|++|++++ ..++......+. .+++|++|+++++ .++... ......+++|+
T Consensus 76 ~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 76 NTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFN-GLASLNTLELFDN-WLTVIP-SGAFEYLSKLR 150 (452)
T ss_dssp TCSEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTT-TCTTCCEEECCSS-CCSBCC-TTTSSSCTTCC
T ss_pred CccEEECcCCc-CceECHHHcCCCCCCCEEECCC-CccCCcChhhcc-CcccCCEEECCCC-cCCccC-hhhhcccCCCC
Confidence 45555555432 3333333344555555555555 233322111121 2555666665554 222111 01112456666
Q ss_pred EEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEec
Q 012414 203 SLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDA 282 (464)
Q Consensus 203 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (464)
.|++++|.+.......+.++++|+.|+++++..+.......+. .+++|+.|+++++. +... . .+..+++|++|++
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n~-l~~~--~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-GLFNLKYLNLGMCN-IKDM--P-NLTPLVGLEELEM 225 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT-TCTTCCEEECTTSC-CSSC--C-CCTTCTTCCEEEC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc-CCCCCCEEECCCCc-cccc--c-cccccccccEEEC
Confidence 6666666555433334555666777776665444332211122 25666666666543 2111 0 1233556666666
Q ss_pred cCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCC
Q 012414 283 GHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362 (464)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 362 (464)
+++. +.......+..+++|+.|++++|.+.......+ ..+++|+.|+++++ .++.... .....+++|+.|+++++
T Consensus 226 s~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 226 SGNH--FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTSC--CSEECGGGGTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSS
T ss_pred cCCc--CcccCcccccCccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCC-cCCccCh-HHhccccCCCEEEccCC
Confidence 6654 333333445556666666666665443322222 24556666666553 2322111 11123455666666553
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.53 E-value=2.6e-17 Score=148.02 Aligned_cols=245 Identities=11% Similarity=0.004 Sum_probs=135.8
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (464)
+++|+.|++++|.++......+.++++|++|+++++. +..... ...++|++|+++++. +... ....+..+++|
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~----~~~~~L~~L~l~~n~-i~~~-~~~~~~~l~~L 149 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPP----NLPSSLVELRIHDNR-IRKV-PKGVFSGLRNM 149 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCS----SCCTTCCEEECCSSC-CCCC-CSGGGSSCSSC
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCc----cccccCCEEECCCCc-cCcc-CHhHhCCCccC
Confidence 4445555555444443333334445555555555432 221000 012456666665542 1111 01123345667
Q ss_pred cEEeccCCCcccc-HHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcE
Q 012414 278 LQLDAGHCFSELS-TTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356 (464)
Q Consensus 278 ~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 356 (464)
++|+++++.. .. ......+..+ +|+.|+++++.+..... ...++|+.|+++++ .+.......+ ..+++|+.
T Consensus 150 ~~L~l~~n~l-~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~----~~~~~L~~L~l~~n-~i~~~~~~~l-~~l~~L~~ 221 (332)
T 2ft3_A 150 NCIEMGGNPL-ENSGFEPGAFDGL-KLNYLRISEAKLTGIPK----DLPETLNELHLDHN-KIQAIELEDL-LRYSKLYR 221 (332)
T ss_dssp CEEECCSCCC-BGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS----SSCSSCSCCBCCSS-CCCCCCTTSS-TTCTTCSC
T ss_pred CEEECCCCcc-ccCCCCcccccCC-ccCEEECcCCCCCccCc----cccCCCCEEECCCC-cCCccCHHHh-cCCCCCCE
Confidence 7777666542 11 1112223333 67777777776543211 12367888888875 3443222222 36789999
Q ss_pred EeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhc------CCC
Q 012414 357 IDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR------CSE 430 (464)
Q Consensus 357 L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~------~~~ 430 (464)
|+++++ .++......+ ..+++|+.|++++|. ++. +......+++|+.|++++ +.++......+.. .+.
T Consensus 222 L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 222 LGLGHN-QIRMIENGSL-SFLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp CBCCSS-CCCCCCTTGG-GGCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCC
T ss_pred EECCCC-cCCcCChhHh-hCCCCCCEEECCCCc-Cee--cChhhhcCccCCEEECCC-CCCCccChhHcccccccccccc
Confidence 999985 4444222222 368999999999976 542 212234789999999999 6888776665543 478
Q ss_pred ccEEecCCccCCChHH-HHHHHhcCcccceeeecC
Q 012414 431 LLFLKLGLCENISDKG-LFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 431 L~~L~l~~~~~i~~~~-~~~~~~~~~~L~~l~l~~ 464 (464)
|+.|++.+|+ +.... ....+..+++|+.+++++
T Consensus 296 l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 296 YNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp BSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC--
T ss_pred ccceEeecCc-ccccccCcccccccchhhhhhccc
Confidence 9999999995 43211 222346789999998864
No 65
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.53 E-value=3.8e-13 Score=121.77 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=112.8
Q ss_pred CCCCceeecccccccChhHHHHH---Hh-cCCCCcEEeccCCCccccHHHHHHH-hcCCCCcEEEcCCCCCChHHHHHHH
Q 012414 248 CPLLKTIFVSRCKFVSSTGLISV---IR-GHSGLLQLDAGHCFSELSTTLLHHM-RDLKNLEAITMDGARISDSCFQTIS 322 (464)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~ 322 (464)
.+.|++|+++++. ++......+ +. ..++|++|+++++. +++.....+ ..+++|+.|++++|.+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 3677788887754 554443332 22 23577777777776 444444333 3456777777777777776666554
Q ss_pred H----hCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCcEEeccCCCCCChHHHHHHHh---cCCCCcEEeccCCCCCc
Q 012414 323 F----NCKSLVEIGLSKCLGVTNTGITQLV---SGCVNLKTIDLTCCHSITDDAISAIAD---SCRGLVCLKIESCNMIT 392 (464)
Q Consensus 323 ~----~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~ 392 (464)
. ..++|+.|++++| .+++.+...+. ..+++|++|++++| .+++.+...+.. ..++|++|++++|. ++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 3 2466777777775 46665544432 35667777777774 567666555443 35677777777765 67
Q ss_pred HHHHHHHHh---cCCCccEEecCCCCCCChHHHHHhhcC--CC---ccEEe--cCCccCCCh
Q 012414 393 EKGLYQLGS---FCLRLEEIDLTDCNGVNDKGLEYLSRC--SE---LLFLK--LGLCENISD 444 (464)
Q Consensus 393 ~~~~~~l~~---~~~~L~~L~l~~c~~i~~~~~~~l~~~--~~---L~~L~--l~~~~~i~~ 444 (464)
+.+...++. .+++|+.|++++ +.+++.+...+... +. |+.+. +..+ .+++
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~-N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~ 284 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYF-NELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSE 284 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTT-SSCCHHHHHHHHHCC------CEEECCCC-----CHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccC-CCCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCH
Confidence 766655543 357777777777 47777777766542 11 66665 5544 4433
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=6.5e-16 Score=145.82 Aligned_cols=235 Identities=17% Similarity=0.060 Sum_probs=119.8
Q ss_pred CCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcE
Q 012414 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (464)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (464)
+|+.|++++|.++......+..+++|+.|+++++. +..... ...+++|+.|+++++. +.. +...++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-l~~------l~~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNY-VQE------LLVGPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSSE-EEE------EEECTTCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCCc-CCC------CCCCCCcCE
Confidence 45555555554443333334445555555555432 221100 1224555555555542 211 112355666
Q ss_pred EeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEec
Q 012414 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDL 359 (464)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 359 (464)
|+++++.. .... ...+++|+.|++++|.++......+. .+++|+.|+++++ .++......+...+++|+.|++
T Consensus 104 L~L~~N~l--~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 104 LHAANNNI--SRVS---CSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp EECCSSCC--CCEE---ECCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEEC
T ss_pred EECcCCcC--CCCC---ccccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEec
Confidence 66665542 1110 11345666666666665443222222 4566777777664 3443333333335667777777
Q ss_pred cCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCc
Q 012414 360 TCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 439 (464)
Q Consensus 360 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~ 439 (464)
++| .++.. ... ..+++|+.|++++|. ++..... ...+++|+.|++++ +.++.. ...+..+++|+.|++++|
T Consensus 177 s~N-~l~~~--~~~-~~l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~-N~l~~l-p~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 177 QYN-FIYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRN-NKLVLI-EKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TTS-CCCEE--ECC-CCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTT-SCCCEE-CTTCCCCTTCCEEECTTC
T ss_pred CCC-ccccc--ccc-ccCCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecC-CcCccc-chhhccCCCCCEEEcCCC
Confidence 764 34332 001 136777777777765 4432111 23567788888887 466642 223455778888888888
Q ss_pred cCCChHHHHHHHhcCcccceeee
Q 012414 440 ENISDKGLFYIASNCLRIQGLDL 462 (464)
Q Consensus 440 ~~i~~~~~~~~~~~~~~L~~l~l 462 (464)
.+....+...+..+++|+.+++
T Consensus 248 -~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 248 -GFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp -CBCHHHHHHHHTTCHHHHHHHH
T ss_pred -CCcCcchHHHHHhCCCCcEEec
Confidence 5554455555566666665544
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=6.9e-16 Score=144.89 Aligned_cols=229 Identities=14% Similarity=0.109 Sum_probs=113.7
Q ss_pred CCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCc
Q 012414 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLK 252 (464)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 252 (464)
+++++|+++++ .++...... ...+++|+.|++++|.+.......+..+++|++|+++++. +.......+ ..+++|+
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-EYLSKLR 150 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-SSCTTCC
T ss_pred CCccEEECcCC-cCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhh-cccCCCC
Confidence 56777777765 333211111 2256777777777776655444455666777777776642 322111111 2256666
Q ss_pred eeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEe
Q 012414 253 TIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIG 332 (464)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 332 (464)
+|+++++. +.... ...+..+++|++|+++++.. +.......+..+ ++|+.|+
T Consensus 151 ~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~-l~~i~~~~~~~l-------------------------~~L~~L~ 202 (452)
T 3zyi_A 151 ELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKK-LEYISEGAFEGL-------------------------FNLKYLN 202 (452)
T ss_dssp EEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTT-CCEECTTTTTTC-------------------------TTCCEEE
T ss_pred EEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCC-ccccChhhccCC-------------------------CCCCEEE
Confidence 66665542 21100 11123345555555554432 222222223334 4555555
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecC
Q 012414 333 LSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLT 412 (464)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 412 (464)
++++. +... .. ...+++|++|+++++ .++......+ ..+++|+.|+++++. ++...... ...+++|+.|+++
T Consensus 203 L~~n~-l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 203 LGMCN-IKDM--PN-LTPLVGLEELEMSGN-HFPEIRPGSF-HGLSSLKKLWVMNSQ-VSLIERNA-FDGLASLVELNLA 274 (452)
T ss_dssp CTTSC-CSSC--CC-CTTCTTCCEEECTTS-CCSEECGGGG-TTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECC
T ss_pred CCCCc-cccc--cc-ccccccccEEECcCC-cCcccCcccc-cCccCCCEEEeCCCc-CceECHHH-hcCCCCCCEEECC
Confidence 54432 2211 11 124556666666663 3333211112 246677777776654 33222111 2356777777777
Q ss_pred CCCCCChHHHHHhhcCCCccEEecCCccCC
Q 012414 413 DCNGVNDKGLEYLSRCSELLFLKLGLCENI 442 (464)
Q Consensus 413 ~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i 442 (464)
+ +.++......+..+++|+.|++++|+-.
T Consensus 275 ~-N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 275 H-NNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp S-SCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred C-CcCCccChHHhccccCCCEEEccCCCcC
Confidence 7 4666554445556777888888777533
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.51 E-value=4.9e-16 Score=145.38 Aligned_cols=230 Identities=16% Similarity=0.102 Sum_probs=115.5
Q ss_pred CCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCc
Q 012414 173 VNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLK 252 (464)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 252 (464)
++++.|+++++ .+....... +..+++|+.|++++|.+.......+..+++|++|+++++. +.......+ ..+++|+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAF-VYLSKLK 139 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTT-TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTS-CSCSSCC
T ss_pred CCCcEEEccCC-cCCeeCHHH-hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHh-hccccCc
Confidence 56777777765 333221111 2356777777777776655444556667777777777642 332111111 2256666
Q ss_pred eeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEe
Q 012414 253 TIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIG 332 (464)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 332 (464)
+|+++++. +.... ...+..+++|++|+++++.. +.......+..+++|+.|++++|.+....
T Consensus 140 ~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 201 (440)
T 3zyj_A 140 ELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKR-LSYISEGAFEGLSNLRYLNLAMCNLREIP--------------- 201 (440)
T ss_dssp EEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTT-CCEECTTTTTTCSSCCEEECTTSCCSSCC---------------
T ss_pred eeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCC-cceeCcchhhcccccCeecCCCCcCcccc---------------
Confidence 66666542 21110 01123345556665555432 22222223344445555555544332110
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecC
Q 012414 333 LSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLT 412 (464)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 412 (464)
. ...+++|++|+++++ .++......+ ..+++|+.|+++++. ++...... ...+++|+.|+|+
T Consensus 202 -------------~-~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 202 -------------N-LTPLIKLDELDLSGN-HLSAIRPGSF-QGLMHLQKLWMIQSQ-IQVIERNA-FDNLQSLVEINLA 263 (440)
T ss_dssp -------------C-CTTCSSCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTCC-CCEECTTS-STTCTTCCEEECT
T ss_pred -------------c-cCCCcccCEEECCCC-ccCccChhhh-ccCccCCEEECCCCc-eeEEChhh-hcCCCCCCEEECC
Confidence 1 124456666666654 3333211111 245667777776654 33322211 1256777777777
Q ss_pred CCCCCChHHHHHhhcCCCccEEecCCccCCC
Q 012414 413 DCNGVNDKGLEYLSRCSELLFLKLGLCENIS 443 (464)
Q Consensus 413 ~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~ 443 (464)
+ +.++......+..+++|+.|++++|+-.-
T Consensus 264 ~-N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 264 H-NNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp T-SCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred C-CCCCccChhHhccccCCCEEEcCCCCccC
Confidence 7 46665555555667777777777775433
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=9.3e-17 Score=142.92 Aligned_cols=251 Identities=16% Similarity=0.145 Sum_probs=139.9
Q ss_pred CCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccCh-----hH---HHHhhcccCCceeEecCCCCCChhHHHH
Q 012414 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTN-----DS---FCSIATLAKLESLVMVGCPCVDDTGLRF 243 (464)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-----~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 243 (464)
.++|++|+++++. +. ....+... |+.|+++++.+.. .. ......+++|++|+++++. +.......
T Consensus 42 ~~~L~~l~l~~n~-l~--~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 114 (312)
T 1wwl_A 42 GRSLEYLLKRVDT-EA--DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPPP 114 (312)
T ss_dssp EEECTTHHHHCCT-TC--CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCCC
T ss_pred CCCceeEeecccc-cc--cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHHH
Confidence 5667777777663 21 11112211 5666666664422 11 1122357889999888754 33211111
Q ss_pred H-HhcCCCCceeecccccccChh--HHHHHHh-cCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChH-HH
Q 012414 244 L-ESGCPLLKTIFVSRCKFVSST--GLISVIR-GHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDS-CF 318 (464)
Q Consensus 244 l-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~ 318 (464)
+ ...+++|++|+++++. +... .+..+.. ..++|++|+++++. +.......+..+++|+.|++++|.+... .+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH--SLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp SSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS--CCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC--CccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 1 1347888888888764 3222 1222211 12788888888776 3443345566778888888888875442 22
Q ss_pred HHHH--HhCCCCcEEecCCCCCCCHH--HHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHH
Q 012414 319 QTIS--FNCKSLVEIGLSKCLGVTNT--GITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEK 394 (464)
Q Consensus 319 ~~l~--~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 394 (464)
..-. ..+++|++|+++++ .++.. ....+...+++|++|+++++ .++..........+++|+.|++++|. ++.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~- 267 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQ- 267 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSS-
T ss_pred HHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cCh-
Confidence 1111 35678888888875 35421 12233446678888888874 44432211111235778888887765 441
Q ss_pred HHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCC
Q 012414 395 GLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENIS 443 (464)
Q Consensus 395 ~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~ 443 (464)
+... ..++|+.|++++ +.+++. ..+..+++|+.|++++| .++
T Consensus 268 -ip~~--~~~~L~~L~Ls~-N~l~~~--p~~~~l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 268 -VPKG--LPAKLSVLDLSY-NRLDRN--PSPDELPQVGNLSLKGN-PFL 309 (312)
T ss_dssp -CCSS--CCSEEEEEECCS-SCCCSC--CCTTTSCEEEEEECTTC-TTT
T ss_pred -hhhh--ccCCceEEECCC-CCCCCC--hhHhhCCCCCEEeccCC-CCC
Confidence 1110 115788888887 577654 22566778888888877 444
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=8.5e-17 Score=143.04 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=40.2
Q ss_pred hcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcC
Q 012414 298 RDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSC 377 (464)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 377 (464)
..+++|+.|++++|.+.......+ ..+++|+.|+++++. +....... ...+++|+.|+++++ .++......+. .+
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~ 246 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQ-HF 246 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTS-CCCBCSSSSCC-CC
T ss_pred hhCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCC-CCcccCHHHHH-hh
Confidence 344455555555554433221112 144556666665532 22211111 134566777777664 33332222222 33
Q ss_pred -CCCcEEeccCCC
Q 012414 378 -RGLVCLKIESCN 389 (464)
Q Consensus 378 -~~L~~L~l~~~~ 389 (464)
++|+.|++++++
T Consensus 247 ~~~L~~L~L~~N~ 259 (306)
T 2z66_A 247 PSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTCC
T ss_pred hccCCEEEccCCC
Confidence 377777777766
No 71
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.50 E-value=8.4e-17 Score=143.10 Aligned_cols=131 Identities=15% Similarity=0.003 Sum_probs=55.1
Q ss_pred cCCCccEEEecC-CCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 012414 94 WTRSLKSLILSR-STGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRC 172 (464)
Q Consensus 94 ~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 172 (464)
..++|++|++++ + .+....... ...+++|++|+++++. ++......+..+++|++|+++++ .++......+ ..+
T Consensus 74 ~l~~L~~L~L~~~n-~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~-~~l 148 (313)
T 1ogq_A 74 NLPYLNFLYIGGIN-NLVGPIPPA-IAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSI-SSL 148 (313)
T ss_dssp GCTTCSEEEEEEET-TEESCCCGG-GGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSS-EEESCCCGGG-GGC
T ss_pred CCCCCCeeeCCCCC-cccccCChh-HhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChHH-hcC
Confidence 455666666663 2 111111111 2255666666666543 22222334555566666666552 2221111111 225
Q ss_pred CCccEEeccCCCccCHHHHHHHHhcCC-CCcEEEccCcccChhHHHHhhcccCCceeEecC
Q 012414 173 VNLERLSLKWCMEISDLGIDLLCKKCL-DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 232 (464)
++|++|+++++ .++......+. .++ +|+.|++++|.+.......+..++ |+.|++++
T Consensus 149 ~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 149 PNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp TTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 55555555554 22111111111 233 555555555544333333333333 55555554
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=1.8e-15 Score=132.98 Aligned_cols=207 Identities=16% Similarity=0.086 Sum_probs=93.6
Q ss_pred CCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCc
Q 012414 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLL 278 (464)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 278 (464)
++|+.|+++++.++......+..+++|++|+++++. +.......+. .+++|++|+++++..+.... ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFT-GLALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcC-CccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 455556665555444333344555666666665532 3221111121 24555666555543121110 01122345566
Q ss_pred EEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEe
Q 012414 279 QLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTID 358 (464)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 358 (464)
+|+++++. +.......+..+++|+.|++++|.+.......+ ..+++|++|+
T Consensus 109 ~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------------~~l~~L~~L~ 159 (285)
T 1ozn_A 109 TLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTF---------------------------RDLGNLTHLF 159 (285)
T ss_dssp EEECTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---------------------------TTCTTCCEEE
T ss_pred EEECCCCc--CCEECHhHhhCCcCCCEEECCCCcccccCHhHh---------------------------ccCCCccEEE
Confidence 66665554 222222334445555555555554332211111 2344455555
Q ss_pred ccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCC
Q 012414 359 LTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL 438 (464)
Q Consensus 359 l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~ 438 (464)
++++ .++...... ...+++|+.|+++++. ++......+ ..+++|+.|++++ +.+++.....+..+++|+.|++++
T Consensus 160 l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 160 LHGN-RISSVPERA-FRGLHSLDRLLLHQNR-VAHVHPHAF-RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCS
T ss_pred CCCC-cccccCHHH-hcCccccCEEECCCCc-ccccCHhHc-cCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccC
Confidence 5543 222211111 1134556666665543 332211111 2456666666666 466555555556666677777766
Q ss_pred ccCC
Q 012414 439 CENI 442 (464)
Q Consensus 439 ~~~i 442 (464)
|+-.
T Consensus 235 N~~~ 238 (285)
T 1ozn_A 235 NPWV 238 (285)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 6433
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.48 E-value=3.7e-14 Score=132.46 Aligned_cols=303 Identities=17% Similarity=0.164 Sum_probs=178.2
Q ss_pred CCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhh
Q 012414 65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS 144 (464)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 144 (464)
++++.|+++++. +.. + ....++|++|+++++. +.. +....++|++|+++++. ++.. +.+.
T Consensus 91 ~~L~~L~l~~n~-l~~-----l-----p~~~~~L~~L~l~~n~-l~~-----l~~~~~~L~~L~L~~n~-l~~l--p~~~ 150 (454)
T 1jl5_A 91 PHLESLVASCNS-LTE-----L-----PELPQSLKSLLVDNNN-LKA-----LSDLPPLLEYLGVSNNQ-LEKL--PELQ 150 (454)
T ss_dssp TTCSEEECCSSC-CSS-----C-----CCCCTTCCEEECCSSC-CSC-----CCSCCTTCCEEECCSSC-CSSC--CCCT
T ss_pred CCCCEEEccCCc-CCc-----c-----ccccCCCcEEECCCCc-cCc-----ccCCCCCCCEEECcCCC-CCCC--cccC
Confidence 567777776632 322 2 2234789999998873 221 11122689999999875 4432 2577
Q ss_pred cCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccC
Q 012414 145 FASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK 224 (464)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 224 (464)
.+++|++|+++++ .++. +....++|++|+++++ .++. +.. ...+++|+.|++++|.+.... ...++
T Consensus 151 ~l~~L~~L~l~~N-~l~~-----lp~~~~~L~~L~L~~n-~l~~--l~~-~~~l~~L~~L~l~~N~l~~l~----~~~~~ 216 (454)
T 1jl5_A 151 NSSFLKIIDVDNN-SLKK-----LPDLPPSLEFIAAGNN-QLEE--LPE-LQNLPFLTAIYADNNSLKKLP----DLPLS 216 (454)
T ss_dssp TCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSCCSSCC----CCCTT
T ss_pred CCCCCCEEECCCC-cCcc-----cCCCcccccEEECcCC-cCCc--Ccc-ccCCCCCCEEECCCCcCCcCC----CCcCc
Confidence 8899999999984 4442 1123468999999887 4442 112 346889999999998665310 11358
Q ss_pred CceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCc
Q 012414 225 LESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304 (464)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 304 (464)
|++|+++++. +.. +..+ ..+++|++|+++++. +.. + ....++|++|+++++.. .. . -...++|+
T Consensus 217 L~~L~l~~n~-l~~--lp~~-~~l~~L~~L~l~~N~-l~~--l---~~~~~~L~~L~l~~N~l--~~-l---~~~~~~L~ 280 (454)
T 1jl5_A 217 LESIVAGNNI-LEE--LPEL-QNLPFLTTIYADNNL-LKT--L---PDLPPSLEALNVRDNYL--TD-L---PELPQSLT 280 (454)
T ss_dssp CCEEECCSSC-CSS--CCCC-TTCTTCCEEECCSSC-CSS--C---CSCCTTCCEEECCSSCC--SC-C---CCCCTTCC
T ss_pred ccEEECcCCc-CCc--cccc-CCCCCCCEEECCCCc-CCc--c---cccccccCEEECCCCcc--cc-c---CcccCcCC
Confidence 9999998864 332 1122 347899999998864 222 1 11247899999988763 21 0 01246899
Q ss_pred EEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC-CCCcEEeccCCCCCChHHHHHHHhcCCCCcEE
Q 012414 305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGC-VNLKTIDLTCCHSITDDAISAIADSCRGLVCL 383 (464)
Q Consensus 305 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 383 (464)
.|++++|.+.... ...++|+.|+++++ .+.. + ... ++|+.|+++++ .++. +...+++|+.|
T Consensus 281 ~L~ls~N~l~~l~-----~~~~~L~~L~l~~N-~l~~-----i-~~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L 342 (454)
T 1jl5_A 281 FLDVSENIFSGLS-----ELPPNLYYLNASSN-EIRS-----L-CDLPPSLEELNVSNN-KLIE-----LPALPPRLERL 342 (454)
T ss_dssp EEECCSSCCSEES-----CCCTTCCEEECCSS-CCSE-----E-CCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEE
T ss_pred EEECcCCccCccc-----CcCCcCCEEECcCC-cCCc-----c-cCCcCcCCEEECCCC-cccc-----ccccCCcCCEE
Confidence 9999988765521 12368899998875 3432 1 123 58899999875 4443 22246789999
Q ss_pred eccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCCh--HHHHHhhcC-------------CCccEEecCCccCCC
Q 012414 384 KIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND--KGLEYLSRC-------------SELLFLKLGLCENIS 443 (464)
Q Consensus 384 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~--~~~~~l~~~-------------~~L~~L~l~~~~~i~ 443 (464)
++++|. ++.. .. .+++|+.|++++ +.++. .....+..+ ++|+.|++++| .++
T Consensus 343 ~L~~N~-l~~l--p~---~l~~L~~L~L~~-N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~ 409 (454)
T 1jl5_A 343 IASFNH-LAEV--PE---LPQNLKQLHVEY-NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLR 409 (454)
T ss_dssp ECCSSC-CSCC--CC---CCTTCCEEECCS-SCCSSCCCCCTTCCEEECCC------------------------
T ss_pred ECCCCc-cccc--cc---hhhhccEEECCC-CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCC
Confidence 998875 4421 11 467899999988 46654 222223222 78888998888 443
No 74
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=8.7e-13 Score=119.40 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=140.9
Q ss_pred CCCCcEEeccCCCccccHHHHHHHhc-----CCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHH
Q 012414 274 HSGLLQLDAGHCFSELSTTLLHHMRD-----LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLV 348 (464)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 348 (464)
.++|++|+++++. ++......+.. .++|+.|++++|.+++.++..+...+++|+.|++++| .+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVR--MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSC--CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCCC--CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 4689999999988 55554444443 3699999999999999999888878889999999996 68887776664
Q ss_pred h----cCCCCcEEeccCCCCCChHHHHHHH---hcCCCCcEEeccCCCCCcHHHHHHHHh---cCCCccEEecCCCCCCC
Q 012414 349 S----GCVNLKTIDLTCCHSITDDAISAIA---DSCRGLVCLKIESCNMITEKGLYQLGS---FCLRLEEIDLTDCNGVN 418 (464)
Q Consensus 349 ~----~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~c~~i~ 418 (464)
. ..++|++|++++| .+++.+...++ ...++|++|++++|. +++.++..+.. .+++|+.|++++ +.++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~-N~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY-NGAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS-SCCC
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC-CCCC
Confidence 3 3588999999996 68887766664 357899999999976 89888776653 567999999999 5999
Q ss_pred hHHHHHhh----cCCCccEEecCCccCCChHHHHHHHh
Q 012414 419 DKGLEYLS----RCSELLFLKLGLCENISDKGLFYIAS 452 (464)
Q Consensus 419 ~~~~~~l~----~~~~L~~L~l~~~~~i~~~~~~~~~~ 452 (464)
+.+...+. .+++|++|++++| .+++.+...+..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 98876665 4799999999999 899999988864
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.47 E-value=1.2e-15 Score=135.70 Aligned_cols=207 Identities=15% Similarity=0.159 Sum_probs=126.5
Q ss_pred cCCCCcEEEccCcccChhHHHHh--hcccCCceeEecCCCCCChh--HHHHHHh-cCCCCceeecccccccChhHHHHHH
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSI--ATLAKLESLVMVGCPCVDDT--GLRFLES-GCPLLKTIFVSRCKFVSSTGLISVI 271 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~--~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 271 (464)
.+++|++|++++|.++......+ ..+++|++|+++++. +... .+..+.. ..++|++|+++++. +.... ...+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~-~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS-CEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC-TTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch-HHHh
Confidence 47888888888887765444443 668888888888754 3332 2222222 12788888888764 22211 1223
Q ss_pred hcCCCCcEEeccCCCccccH-HHHHHH--hcCCCCcEEEcCCCCCCh--HHHHHHHHhCCCCcEEecCCCCCCCHHHHHH
Q 012414 272 RGHSGLLQLDAGHCFSELST-TLLHHM--RDLKNLEAITMDGARISD--SCFQTISFNCKSLVEIGLSKCLGVTNTGITQ 346 (464)
Q Consensus 272 ~~~~~L~~L~l~~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 346 (464)
..+++|++|+++++.. ... .....+ ..+++|+.|++++|.+.. .....+...+++|+.|+++++ .+.......
T Consensus 170 ~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 247 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPE-LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAP 247 (312)
T ss_dssp CCCSSCCEEECCSCTT-CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCS
T ss_pred ccCCCCCEEECCCCCc-CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchh
Confidence 4577888888888763 222 133344 678888888888888763 223344456788888888875 344322111
Q ss_pred HHhcCCCCcEEeccCCCCCChHHHHHHHhcC-CCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCCh
Q 012414 347 LVSGCVNLKTIDLTCCHSITDDAISAIADSC-RGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (464)
Q Consensus 347 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (464)
....+++|++|+++++ .++. +...+ ++|+.|+++++. ++... . ...+++|+.|++++ +.+++
T Consensus 248 ~~~~l~~L~~L~Ls~N-~l~~-----ip~~~~~~L~~L~Ls~N~-l~~~p--~-~~~l~~L~~L~L~~-N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFT-GLKQ-----VPKGLPAKLSVLDLSYNR-LDRNP--S-PDELPQVGNLSLKG-NPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTS-CCSS-----CCSSCCSEEEEEECCSSC-CCSCC--C-TTTSCEEEEEECTT-CTTTC
T ss_pred hhhhcCCCCEEECCCC-ccCh-----hhhhccCCceEEECCCCC-CCCCh--h-HhhCCCCCEEeccC-CCCCC
Confidence 1224578888888875 4441 11111 688888888865 54431 1 34678888888888 56654
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=4.8e-14 Score=135.87 Aligned_cols=266 Identities=16% Similarity=0.056 Sum_probs=149.9
Q ss_pred CCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCc
Q 012414 96 RSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNL 175 (464)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 175 (464)
.+++.|+++++. ++. ++.. ..++|++|+++++. ++.... .+++|++|+++++ .++.. ...+++|
T Consensus 40 ~~l~~L~ls~n~-L~~--lp~~--l~~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N-~l~~l-----p~~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT--LPDC--LPAHITTLVIPDNN-LTSLPA----LPPELRTLEVSGN-QLTSL-----PVLPPGL 103 (622)
T ss_dssp HCCCEEECCSSC-CSC--CCSC--CCTTCSEEEECSCC-CSCCCC----CCTTCCEEEECSC-CCSCC-----CCCCTTC
T ss_pred CCCcEEEecCCC-cCc--cChh--hCCCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCC-cCCcC-----CCCCCCC
Confidence 458888888763 221 1100 12688888888764 332111 4678888888874 34321 1147788
Q ss_pred cEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceee
Q 012414 176 ERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIF 255 (464)
Q Consensus 176 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 255 (464)
++|+++++ .++. +....++|+.|++++|.++... ..+++|++|+++++. +.. +....++|+.|+
T Consensus 104 ~~L~Ls~N-~l~~-----l~~~l~~L~~L~L~~N~l~~lp----~~l~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~ 167 (622)
T 3g06_A 104 LELSIFSN-PLTH-----LPALPSGLCKLWIFGNQLTSLP----VLPPGLQELSVSDNQ-LAS-----LPALPSELCKLW 167 (622)
T ss_dssp CEEEECSC-CCCC-----CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEE
T ss_pred CEEECcCC-cCCC-----CCCCCCCcCEEECCCCCCCcCC----CCCCCCCEEECcCCc-CCC-----cCCccCCCCEEE
Confidence 88888776 3332 1114577888888887554311 124778888887753 322 112356777777
Q ss_pred cccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCC
Q 012414 256 VSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSK 335 (464)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 335 (464)
++++. +.... ..+++|+.|+++++.. .. .-...++|+.|++++|.+.... ..+++|+.|++++
T Consensus 168 L~~N~-l~~l~-----~~~~~L~~L~Ls~N~l--~~----l~~~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~ 230 (622)
T 3g06_A 168 AYNNQ-LTSLP-----MLPSGLQELSVSDNQL--AS----LPTLPSELYKLWAYNNRLTSLP-----ALPSGLKELIVSG 230 (622)
T ss_dssp CCSSC-CSCCC-----CCCTTCCEEECCSSCC--SC----CCCCCTTCCEEECCSSCCSSCC-----CCCTTCCEEECCS
T ss_pred CCCCC-CCCCc-----ccCCCCcEEECCCCCC--CC----CCCccchhhEEECcCCcccccC-----CCCCCCCEEEccC
Confidence 77653 22211 3456777777777652 21 0012457777777777654321 1346777777776
Q ss_pred CCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCC
Q 012414 336 CLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCN 415 (464)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~ 415 (464)
+ .++... ..+++|+.|+++++ .++. +...+++|+.|++++|. ++.. ......+++|+.|++++ +
T Consensus 231 N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~L~Ls~N~-L~~l--p~~l~~l~~L~~L~L~~-N 294 (622)
T 3g06_A 231 N-RLTSLP-----VLPSELKELMVSGN-RLTS-----LPMLPSGLLSLSVYRNQ-LTRL--PESLIHLSSETTVNLEG-N 294 (622)
T ss_dssp S-CCSCCC-----CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CCSC--CGGGGGSCTTCEEECCS-C
T ss_pred C-ccCcCC-----CCCCcCcEEECCCC-CCCc-----CCcccccCcEEeCCCCC-CCcC--CHHHhhccccCEEEecC-C
Confidence 4 343311 34567777777764 4432 11145677777777764 4421 12233567777777777 4
Q ss_pred CCChHHHHHhh
Q 012414 416 GVNDKGLEYLS 426 (464)
Q Consensus 416 ~i~~~~~~~l~ 426 (464)
.++......+.
T Consensus 295 ~l~~~~~~~l~ 305 (622)
T 3g06_A 295 PLSERTLQALR 305 (622)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCCcCHHHHH
Confidence 66665555444
No 77
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=5.9e-15 Score=129.63 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=16.0
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 232 (464)
+++|+.|++++|.+.......+..+++|++|++++
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC
Confidence 44555555555544332223334445555555544
No 78
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=1.7e-15 Score=135.51 Aligned_cols=232 Identities=15% Similarity=0.161 Sum_probs=119.9
Q ss_pred CCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCC
Q 012414 172 CVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLL 251 (464)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 251 (464)
.++++.|+++++ .++. +..-...+++|++|++++|.+. .....+.++++|++|+++++. +.. +......+++|
T Consensus 80 ~~~l~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~--lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRA--LPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESS-CCSS--CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCC--CCGGGGGCTTC
T ss_pred ccceeEEEccCC-Cchh--cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-ccc--CcHHHhcCcCC
Confidence 466777777765 3331 1111123667777777777555 223345566777777776643 221 11112235666
Q ss_pred ceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEE
Q 012414 252 KTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEI 331 (464)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 331 (464)
++|++++|....... ..+....+ ...+..+++|+.|++++|.+... ......+++|+.|
T Consensus 153 ~~L~L~~n~~~~~~p--------~~~~~~~~-----------~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L 211 (328)
T 4fcg_A 153 RELSIRACPELTELP--------EPLASTDA-----------SGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSL 211 (328)
T ss_dssp CEEEEEEETTCCCCC--------SCSEEEC------------CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCEE
T ss_pred CEEECCCCCCccccC--------hhHhhccc-----------hhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCEE
Confidence 666666543221100 00100000 00123455666666666654411 1112356667777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEec
Q 012414 332 GLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDL 411 (464)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 411 (464)
+++++. +.. +...+..+++|++|++++|..... ... ....+++|+.|++++|....... .....+++|+.|++
T Consensus 212 ~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~~-~p~-~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 212 KIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALRN-YPP-IFGGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDL 284 (328)
T ss_dssp EEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCCB-CCC-CTTCCCCCCEEECTTCTTCCBCC--TTGGGCTTCCEEEC
T ss_pred EccCCC-CCc--CchhhccCCCCCEEECcCCcchhh-hHH-HhcCCCCCCEEECCCCCchhhcc--hhhhcCCCCCEEeC
Confidence 766643 332 111234567777777777543221 111 12256788888888776433211 11346788889999
Q ss_pred CCCCCCChHHHHHhhcCCCccEEecCCc
Q 012414 412 TDCNGVNDKGLEYLSRCSELLFLKLGLC 439 (464)
Q Consensus 412 ~~c~~i~~~~~~~l~~~~~L~~L~l~~~ 439 (464)
++|+ +.......+..+++|+.+++..+
T Consensus 285 ~~n~-~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 285 RGCV-NLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCT-TCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCC-chhhccHHHhhccCceEEeCCHH
Confidence 8864 43344466778888888888766
No 79
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=1.4e-13 Score=107.98 Aligned_cols=104 Identities=22% Similarity=0.400 Sum_probs=77.1
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhc---CCCCcEEeccCCCCCcHHHHHHHHhcC
Q 012414 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADS---CRGLVCLKIESCNMITEKGLYQLGSFC 403 (464)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~ 403 (464)
+|+.|++++|. +++.++..+ ..+++|++|++++|..++|.++..+... +++|++|++++|+.+|+.|+..+. .|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 57788888765 777777766 4778888888888888888888887742 457888888888888888888776 67
Q ss_pred CCccEEecCCCCCCChHHH--HHhh-cCCCccE
Q 012414 404 LRLEEIDLTDCNGVNDKGL--EYLS-RCSELLF 433 (464)
Q Consensus 404 ~~L~~L~l~~c~~i~~~~~--~~l~-~~~~L~~ 433 (464)
++|++|++++|+.+++.+. ..+. .+|+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 8888888888888887653 3332 4676653
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=5.4e-15 Score=139.50 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=16.1
Q ss_pred CCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCC
Q 012414 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDK 156 (464)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 156 (464)
++|++|+++++. ++......+..+++|++|++++
T Consensus 34 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~ 67 (487)
T 3oja_A 34 WNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67 (487)
T ss_dssp GGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTT
T ss_pred CCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeC
Confidence 355555555542 3333333444555555555554
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.42 E-value=2.5e-14 Score=137.87 Aligned_cols=265 Identities=15% Similarity=0.035 Sum_probs=184.3
Q ss_pred CCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCC
Q 012414 122 PLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDL 201 (464)
Q Consensus 122 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 201 (464)
.+++.|+++++. ++... ..+ .++|++|+++++ .++.. ...+++|++|+++++ .++. +...+++|
T Consensus 40 ~~l~~L~ls~n~-L~~lp-~~l--~~~L~~L~L~~N-~l~~l-----p~~l~~L~~L~Ls~N-~l~~-----lp~~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLP-DCL--PAHITTLVIPDN-NLTSL-----PALPPELRTLEVSGN-QLTS-----LPVLPPGL 103 (622)
T ss_dssp HCCCEEECCSSC-CSCCC-SCC--CTTCSEEEECSC-CCSCC-----CCCCTTCCEEEECSC-CCSC-----CCCCCTTC
T ss_pred CCCcEEEecCCC-cCccC-hhh--CCCCcEEEecCC-CCCCC-----CCcCCCCCEEEcCCC-cCCc-----CCCCCCCC
Confidence 469999999864 33211 111 379999999984 45431 114899999999988 4442 12267899
Q ss_pred cEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEe
Q 012414 202 KSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLD 281 (464)
Q Consensus 202 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (464)
+.|++++|.++.... .+++|+.|+++++. +.. +...+++|++|+++++. +... ....++|+.|.
T Consensus 104 ~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~l-----~~~~~~L~~L~ 167 (622)
T 3g06_A 104 LELSIFSNPLTHLPA----LPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSDNQ-LASL-----PALPSELCKLW 167 (622)
T ss_dssp CEEEECSCCCCCCCC----CCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSCC-----CCCCTTCCEEE
T ss_pred CEEECcCCcCCCCCC----CCCCcCEEECCCCC-CCc-----CCCCCCCCCEEECcCCc-CCCc-----CCccCCCCEEE
Confidence 999999997664211 57899999999854 332 22236899999999874 3221 12357899999
Q ss_pred ccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccC
Q 012414 282 AGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTC 361 (464)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 361 (464)
++++.. .... ..+++|+.|++++|.+.... ...++|+.|+++++ .++. +...+++|+.|++++
T Consensus 168 L~~N~l--~~l~----~~~~~L~~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~ 230 (622)
T 3g06_A 168 AYNNQL--TSLP----MLPSGLQELSVSDNQLASLP-----TLPSELYKLWAYNN-RLTS-----LPALPSGLKELIVSG 230 (622)
T ss_dssp CCSSCC--SCCC----CCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCS
T ss_pred CCCCCC--CCCc----ccCCCCcEEECCCCCCCCCC-----CccchhhEEECcCC-cccc-----cCCCCCCCCEEEccC
Confidence 998863 2211 45689999999999876421 14579999999985 3442 112457999999998
Q ss_pred CCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccC
Q 012414 362 CHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCEN 441 (464)
Q Consensus 362 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~ 441 (464)
+ .++.. ...+++|+.|++++|. ++... ..+++|+.|++++ +.++.. ...+..+++|+.|++++| .
T Consensus 231 N-~L~~l-----p~~l~~L~~L~Ls~N~-L~~lp-----~~~~~L~~L~Ls~-N~L~~l-p~~l~~l~~L~~L~L~~N-~ 295 (622)
T 3g06_A 231 N-RLTSL-----PVLPSELKELMVSGNR-LTSLP-----MLPSGLLSLSVYR-NQLTRL-PESLIHLSSETTVNLEGN-P 295 (622)
T ss_dssp S-CCSCC-----CCCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCS-SCCCSC-CGGGGGSCTTCEEECCSC-C
T ss_pred C-ccCcC-----CCCCCcCcEEECCCCC-CCcCC-----cccccCcEEeCCC-CCCCcC-CHHHhhccccCEEEecCC-C
Confidence 6 55541 2467899999999975 54321 1578999999999 578743 345778999999999999 6
Q ss_pred CChHHHHHH
Q 012414 442 ISDKGLFYI 450 (464)
Q Consensus 442 i~~~~~~~~ 450 (464)
++......+
T Consensus 296 l~~~~~~~l 304 (622)
T 3g06_A 296 LSERTLQAL 304 (622)
T ss_dssp CCHHHHHHH
T ss_pred CCCcCHHHH
Confidence 766555444
No 82
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.39 E-value=5.8e-15 Score=131.99 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=24.7
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEecc
Q 012414 324 NCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIE 386 (464)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 386 (464)
.+++|+.|++++|..... +......+++|++|++++|...+. .... ...+++|+.+++.
T Consensus 251 ~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-iP~~-l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGCVNLSR-LPSL-IAQLPANCIILVP 309 (328)
T ss_dssp CCCCCCEEECTTCTTCCB--CCTTGGGCTTCCEEECTTCTTCCC-CCGG-GGGSCTTCEEECC
T ss_pred CCCCCCEEECCCCCchhh--cchhhhcCCCCCEEeCCCCCchhh-ccHH-HhhccCceEEeCC
Confidence 345555555555432221 111123455566666665433221 1111 1245556666554
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=2.1e-12 Score=114.39 Aligned_cols=187 Identities=15% Similarity=0.131 Sum_probs=91.0
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (464)
+++|++|+++++.+... ..+..+++|+.|+++++. +.+... ...+++|++|+++++. +.... .+..+++|
T Consensus 40 l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNP-LKNVS---AIAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCC-CSCCG---GGTTCTTC
T ss_pred cCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCCc-CCCch---hhcCCCCC
Confidence 45777787777765542 245667777777777653 332211 2336677777776654 22211 13345666
Q ss_pred cEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEE
Q 012414 278 LQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTI 357 (464)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 357 (464)
++|+++++.. .. ...+..+++|+.|++++|.+..... ...+++|+.|+++++ .+.+... ...+++|+.|
T Consensus 110 ~~L~l~~n~l--~~--~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L 178 (308)
T 1h6u_A 110 KTLDLTSTQI--TD--VTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTL 178 (308)
T ss_dssp CEEECTTSCC--CC--CGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEE
T ss_pred CEEECCCCCC--CC--chhhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCC-cCCCChh---hcCCCCCCEE
Confidence 6666666542 11 1124555666666666655433221 224555555555553 2332111 2344555555
Q ss_pred eccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCC
Q 012414 358 DLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (464)
Q Consensus 358 ~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 413 (464)
+++++ .+++... ...+++|+.|++++|. ++... . ...+++|+.|++++
T Consensus 179 ~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 179 KADDN-KISDISP---LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTN 226 (308)
T ss_dssp ECCSS-CCCCCGG---GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEE
T ss_pred ECCCC-ccCcChh---hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccC
Confidence 55553 2322111 1244555555555543 22211 1 22445555555555
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=1.3e-12 Score=115.66 Aligned_cols=193 Identities=17% Similarity=0.199 Sum_probs=134.3
Q ss_pred hcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhc
Q 012414 220 ATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD 299 (464)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (464)
..+++|++|++.++. +... ..+ ..+++|+.|+++++. +..... +..+++|++|+++++.. .. ...+..
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l--~~~-~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n~l--~~--~~~~~~ 105 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTI--EGV-QYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNPL--KN--VSAIAG 105 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCC--TTG-GGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCCC--SC--CGGGTT
T ss_pred HHcCCcCEEEeeCCC-ccCc--hhh-hccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCCcC--CC--chhhcC
Confidence 357889999999864 3331 123 338999999998874 333221 56788999999998863 22 135778
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCC
Q 012414 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (464)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 379 (464)
+++|+.|++++|.+.+.. . ...+++|+.|+++++. +..... ...+++|+.|++++| .+++... ...+++
T Consensus 106 l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~ 174 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ-ITNISP---LAGLTNLQYLSIGNA-QVSDLTP---LANLSK 174 (308)
T ss_dssp CTTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTT
T ss_pred CCCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc-cCcCcc---ccCCCCccEEEccCC-cCCCChh---hcCCCC
Confidence 889999999999876533 2 3478899999998853 443221 457789999999886 4554222 346789
Q ss_pred CcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCC
Q 012414 380 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENIS 443 (464)
Q Consensus 380 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~ 443 (464)
|+.|++++|. ++.... ...+++|+.|++++ +.+++.. .+..+++|+.|++++| .++
T Consensus 175 L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~-N~l~~~~--~l~~l~~L~~L~l~~N-~i~ 230 (308)
T 1h6u_A 175 LTTLKADDNK-ISDISP---LASLPNLIEVHLKN-NQISDVS--PLANTSNLFIVTLTNQ-TIT 230 (308)
T ss_dssp CCEEECCSSC-CCCCGG---GGGCTTCCEEECTT-SCCCBCG--GGTTCTTCCEEEEEEE-EEE
T ss_pred CCEEECCCCc-cCcChh---hcCCCCCCEEEccC-CccCccc--cccCCCCCCEEEccCC-eee
Confidence 9999998875 443221 34788999999988 4776554 4677899999999888 443
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=5.7e-14 Score=124.79 Aligned_cols=231 Identities=15% Similarity=0.108 Sum_probs=112.0
Q ss_pred CCCccEEeccCCCccCHHHHHHHHh--cCCCCcEEEccCcccChhHHHHh--hcccCCceeEecCCCCCChh----HHHH
Q 012414 172 CVNLERLSLKWCMEISDLGIDLLCK--KCLDLKSLDVSYLKLTNDSFCSI--ATLAKLESLVMVGCPCVDDT----GLRF 243 (464)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~----~~~~ 243 (464)
...++.+.+..+ .+++..+..+.. ..++|++|++++|.+.......+ ..+++|++|+++++. +... ....
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHH
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHH
Confidence 345677777776 555555443322 34668888888886654444444 567777777777643 3221 1111
Q ss_pred HHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChH-HHHH--
Q 012414 244 LESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDS-CFQT-- 320 (464)
Q Consensus 244 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-- 320 (464)
+. .+++|++|+++++.. .......+..+++|+.|++++|.+... ++..
T Consensus 141 ~~-~~~~L~~L~Ls~n~l----------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 141 QW-LKPGLKVLSIAQAHS----------------------------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp TT-BCSCCCEEEEECCSS----------------------------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred hh-hccCCCEEEeeCCCc----------------------------chhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence 22 356666666655431 111112223344444444444443221 1110
Q ss_pred HHHhCCCCcEEecCCCCCCCHH--HHHHHHhcCCCCcEEeccCCCCCChHHHHHHH--hcCCCCcEEeccCCCCCcHHHH
Q 012414 321 ISFNCKSLVEIGLSKCLGVTNT--GITQLVSGCVNLKTIDLTCCHSITDDAISAIA--DSCRGLVCLKIESCNMITEKGL 396 (464)
Q Consensus 321 l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~~~~~L~~L~l~~~~~~~~~~~ 396 (464)
....+++|++|++++| .++.. ....+...+++|++|+++++ .+++.....+. .++++|++|++++|. ++..
T Consensus 192 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~l-- 266 (310)
T 4glp_A 192 CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG-LEQV-- 266 (310)
T ss_dssp CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSC--
T ss_pred hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC-CCch--
Confidence 0013445555555553 23211 11112234455555555553 23321100011 012567777776654 3311
Q ss_pred HHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCCh
Q 012414 397 YQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 444 (464)
Q Consensus 397 ~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~ 444 (464)
.. ...++|+.|++++ +.++.. ..+..+++|+.|++++| .+++
T Consensus 267 p~--~~~~~L~~L~Ls~-N~l~~~--~~~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 267 PK--GLPAKLRVLDLSS-NRLNRA--PQPDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp CS--CCCSCCSCEECCS-CCCCSC--CCTTSCCCCSCEECSST-TTSC
T ss_pred hh--hhcCCCCEEECCC-CcCCCC--chhhhCCCccEEECcCC-CCCC
Confidence 00 0136788888877 466643 22456788888888887 5544
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.2e-13 Score=122.62 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=19.1
Q ss_pred cCCCCcEEEccCcccChhHHHHhhcccCCceeEecCC
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGC 233 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 233 (464)
.+++|+.|++++|.+.......+..+++|++|+++++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC
Confidence 3555555555555444333334445555555655553
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.28 E-value=9.3e-14 Score=121.35 Aligned_cols=203 Identities=18% Similarity=0.174 Sum_probs=88.9
Q ss_pred CCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcE
Q 012414 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (464)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (464)
+|+.|+++++.++......+.++++|++|+++++. +.......+ ..+++|++|+++++. +.... ...+..+++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~ 104 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAY-QSLSHLSTLILTGNP-IQSLA-LGAFSGLSSLQK 104 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTT-TTCTTCCEEECTTCC-CCEEC-TTTTTTCTTCCE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHc-cCCcCCCEEECCCCc-cCccC-hhhhcCCccccE
Confidence 46666666665544333345556666666666542 322111111 124555555555532 11110 011223455555
Q ss_pred EeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEec
Q 012414 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDL 359 (464)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 359 (464)
|+++++.. .......+..+++|+.|++++|.+.... +...+..+++|++|++
T Consensus 105 L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 105 LVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFK--------------------------LPEYFSNLTNLEHLDL 156 (276)
T ss_dssp EECTTSCC--CCSTTCCCTTCTTCCEEECCSSCCCCCC--------------------------CCGGGGGCTTCCEEEC
T ss_pred EECCCCCc--cccCchhcccCCCCCEEECcCCccceec--------------------------CchhhccCCCCCEEEC
Confidence 55554431 1111111334445555555554433211 1112234455555555
Q ss_pred cCCCCCCh---HHHHHHHhcCCCCc-EEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEe
Q 012414 360 TCCHSITD---DAISAIADSCRGLV-CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLK 435 (464)
Q Consensus 360 ~~~~~l~~---~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~ 435 (464)
+++ .++. ..+..+. .++.|. .|+++++. ++...... ....+|+.|++++ +.++......+..+++|+.|+
T Consensus 157 s~N-~l~~~~~~~~~~l~-~L~~l~l~L~ls~n~-l~~~~~~~--~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 157 SSN-KIQSIYCTDLRVLH-QMPLLNLSLDLSLNP-MNFIQPGA--FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp CSS-CCCEECGGGGHHHH-TCTTCCEEEECCSSC-CCEECTTS--SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEE
T ss_pred CCC-CCCcCCHHHhhhhh-hccccceeeecCCCc-ccccCccc--cCCCcccEEECCC-CceeecCHhHhcccccccEEE
Confidence 553 2222 1122221 223333 56665543 33211110 1223677777777 456554444455677777777
Q ss_pred cCCcc
Q 012414 436 LGLCE 440 (464)
Q Consensus 436 l~~~~ 440 (464)
+++|+
T Consensus 231 l~~N~ 235 (276)
T 2z62_A 231 LHTNP 235 (276)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 77663
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=1.2e-12 Score=113.85 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=41.7
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCC
Q 012414 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCS 429 (464)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 429 (464)
.+++|++|++++| .++..... ....+++|+.|++++|. ++.... .....+++|+.|++++ +.++......+..++
T Consensus 131 ~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 131 KLTNLTYLNLAHN-QLQSLPKG-VFDKLTNLTELDLSYNQ-LQSLPE-GVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLT 205 (272)
T ss_dssp TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred cCCCCCEEECCCC-ccCccCHH-HhccCccCCEEECCCCC-cCccCH-HHhcCCccCCEEECCC-CcCCccCHHHHhCCc
Confidence 3455555555554 33321111 11245566666666553 332111 1122456666666666 355544334445566
Q ss_pred CccEEecCCcc
Q 012414 430 ELLFLKLGLCE 440 (464)
Q Consensus 430 ~L~~L~l~~~~ 440 (464)
+|+.|++++|+
T Consensus 206 ~L~~L~l~~N~ 216 (272)
T 3rfs_A 206 SLQYIWLHDNP 216 (272)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 66666666663
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=2.4e-12 Score=106.01 Aligned_cols=149 Identities=16% Similarity=0.166 Sum_probs=84.5
Q ss_pred CCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012414 274 HSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVN 353 (464)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 353 (464)
+++|++|+++++.. .. . ..+..+++|+.|++++|.+.... .+ ..+++|++|+++++ .+.+.....+ ..+++
T Consensus 43 l~~L~~L~l~~n~i--~~-l-~~l~~l~~L~~L~l~~n~~~~~~--~l-~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLANINV--TD-L-TGIEYAHNIKDLTINNIHATNYN--PI-SGLSNLERLRIMGK-DVTSDKIPNL-SGLTS 113 (197)
T ss_dssp HHTCCEEEEESSCC--SC-C-TTGGGCTTCSEEEEESCCCSCCG--GG-TTCTTCCEEEEECT-TCBGGGSCCC-TTCTT
T ss_pred cCCccEEeccCCCc--cC-h-HHHhcCCCCCEEEccCCCCCcch--hh-hcCCCCCEEEeECC-ccCcccChhh-cCCCC
Confidence 45677777777653 21 1 14666777777777777544322 22 25667777777664 3443222222 25566
Q ss_pred CcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccE
Q 012414 354 LKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLF 433 (464)
Q Consensus 354 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~ 433 (464)
|+.|++++| .+++.....+. .+++|++|++++|..+++.. ....+++|+.|++++ +.+++.. .+..+++|+.
T Consensus 114 L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~-n~i~~~~--~l~~l~~L~~ 185 (197)
T 4ezg_A 114 LTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQF-DGVHDYR--GIEDFPKLNQ 185 (197)
T ss_dssp CCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTT-BCCCCCT--TGGGCSSCCE
T ss_pred CCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCC-CCCcChH--HhccCCCCCE
Confidence 777777764 45544343333 56677777776665344332 133566777777766 3555432 4556667777
Q ss_pred EecCCc
Q 012414 434 LKLGLC 439 (464)
Q Consensus 434 L~l~~~ 439 (464)
|++++|
T Consensus 186 L~l~~N 191 (197)
T 4ezg_A 186 LYAFSQ 191 (197)
T ss_dssp EEECBC
T ss_pred EEeeCc
Confidence 777666
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.22 E-value=4.1e-13 Score=116.72 Aligned_cols=182 Identities=15% Similarity=0.075 Sum_probs=124.5
Q ss_pred CCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCC
Q 012414 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS 327 (464)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 327 (464)
.+++++|+++++. +.... ...+..+++|++|+++++. +.......+..+++|+.|+++++.+.......+ ..+++
T Consensus 36 ~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~ 110 (270)
T 2o6q_A 36 PADTKKLDLQSNK-LSSLP-SKAFHRLTKLRLLYLNDNK--LQTLPAGIFKELKNLETLWVTDNKLQALPIGVF-DQLVN 110 (270)
T ss_dssp CTTCSEEECCSSC-CSCCC-TTSSSSCTTCCEEECCSSC--CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT-TTCSS
T ss_pred CCCCCEEECcCCC-CCeeC-HHHhcCCCCCCEEECCCCc--cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc-ccccC
Confidence 3679999998864 33211 1124468899999999876 333333345678999999999998665332222 36789
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCcc
Q 012414 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLE 407 (464)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 407 (464)
|+.|+++++ .+...... .+..+++|++|+++++ .++..... ....+++|+.|+++++. ++...... ...+++|+
T Consensus 111 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~ 184 (270)
T 2o6q_A 111 LAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNNQ-LKRVPEGA-FDKLTELK 184 (270)
T ss_dssp CCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCC
T ss_pred CCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCCc-CcEeChhH-hccCCCcC
Confidence 999999985 34432221 2246789999999986 44432211 12367999999999875 44322211 23678999
Q ss_pred EEecCCCCCCChHHHHHhhcCCCccEEecCCccC
Q 012414 408 EIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCEN 441 (464)
Q Consensus 408 ~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~ 441 (464)
.|++++ +.++......+..+++|+.|++++|+.
T Consensus 185 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 185 TLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCC-CcCCcCCHHHhccccCCCEEEecCCCe
Confidence 999999 588766555677899999999999853
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.22 E-value=1.2e-12 Score=114.21 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=7.0
Q ss_pred cCCCCcEEeccC
Q 012414 350 GCVNLKTIDLTC 361 (464)
Q Consensus 350 ~~~~L~~L~l~~ 361 (464)
.+++|+.|++++
T Consensus 222 ~l~~L~~L~l~~ 233 (276)
T 2z62_A 222 RLTSLQKIWLHT 233 (276)
T ss_dssp TCCSCCEEECCS
T ss_pred ccccccEEEccC
Confidence 455666666664
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=7.1e-12 Score=103.13 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=65.3
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCC
Q 012414 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (464)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 379 (464)
+++|+.|+++++.+.+.. . ...+++|+.|++++| .+.+. . .+..+++|++|+++++ .+++.....+. .+++
T Consensus 43 l~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--G-IEYAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGK-DVTSDKIPNLS-GLTS 113 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--T-GGGCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECT-TCBGGGSCCCT-TCTT
T ss_pred cCCccEEeccCCCccChH--H-HhcCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECC-ccCcccChhhc-CCCC
Confidence 345555555555443211 1 124455555555554 23221 1 1224455555555553 33332222222 3455
Q ss_pred CcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccce
Q 012414 380 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQG 459 (464)
Q Consensus 380 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 459 (464)
|+.|++++|. +++.....+. .+++|+.|++++|..+++.. .+..+++|+.|++++| .+++.. .+..+++|+.
T Consensus 114 L~~L~Ls~n~-i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~ 185 (197)
T 4ezg_A 114 LTLLDISHSA-HDDSILTKIN-TLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQ 185 (197)
T ss_dssp CCEEECCSSB-CBGGGHHHHT-TCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCE
T ss_pred CCEEEecCCc-cCcHhHHHHh-hCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCC-CCcChH---HhccCCCCCE
Confidence 5555555543 4433333332 45555555555532244332 3445555555555555 343321 1244555555
Q ss_pred eeec
Q 012414 460 LDLY 463 (464)
Q Consensus 460 l~l~ 463 (464)
|+++
T Consensus 186 L~l~ 189 (197)
T 4ezg_A 186 LYAF 189 (197)
T ss_dssp EEEC
T ss_pred EEee
Confidence 5554
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=3.6e-11 Score=105.39 Aligned_cols=170 Identities=18% Similarity=0.174 Sum_probs=116.7
Q ss_pred CCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCC
Q 012414 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS 327 (464)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 327 (464)
+++|+.|+++++. +... .. +..+++|++|+++++.. .... .+..+++|+.|++++|.+.... . ...+++
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n~l--~~~~--~l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNKL--TDIK--PLANLKNLGWLFLDENKVKDLS--S-LKDLKK 113 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSSCC--CCCG--GGTTCTTCCEEECCSSCCCCGG--G-GTTCTT
T ss_pred cCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCCcc--CCCc--ccccCCCCCEEECCCCcCCCCh--h-hccCCC
Confidence 5788999998864 3221 11 45688999999988863 2211 1778889999999998876532 2 237788
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCcc
Q 012414 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLE 407 (464)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 407 (464)
|+.|+++++ .+.+. .. ...+++|+.|++++| .+++. . ....+++|+.|++++|. +++... ...+++|+
T Consensus 114 L~~L~L~~n-~i~~~--~~-l~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~ 181 (291)
T 1h6t_A 114 LKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNN-KITDI--T-VLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQ 181 (291)
T ss_dssp CCEEECTTS-CCCCC--GG-GGGCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCC
T ss_pred CCEEECCCC-cCCCC--hh-hcCCCCCCEEEccCC-cCCcc--h-hhccCCCCCEEEccCCc-cccchh---hcCCCccC
Confidence 999999885 35442 22 346788999999885 44443 2 23367889999998875 444322 44778899
Q ss_pred EEecCCCCCCChHHHHHhhcCCCccEEecCCccCCCh
Q 012414 408 EIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 444 (464)
Q Consensus 408 ~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~ 444 (464)
.|++++ +.+++. ..+..+++|+.|++++| .++.
T Consensus 182 ~L~L~~-N~i~~l--~~l~~l~~L~~L~l~~n-~i~~ 214 (291)
T 1h6t_A 182 NLYLSK-NHISDL--RALAGLKNLDVLELFSQ-ECLN 214 (291)
T ss_dssp EEECCS-SCCCBC--GGGTTCTTCSEEEEEEE-EEEC
T ss_pred EEECCC-CcCCCC--hhhccCCCCCEEECcCC-cccC
Confidence 999988 477764 34677888999998888 4433
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.16 E-value=3.4e-12 Score=110.88 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=17.3
Q ss_pred cCCCCcEEEccCcccChhHHHHhhcccCCceeEecC
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 232 (464)
.+++|+.|+++++.+.......+..+++|++|++++
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC
Confidence 345555555555544433333344455555555554
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.14 E-value=5.8e-12 Score=109.50 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=99.1
Q ss_pred HhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhc
Q 012414 297 MRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADS 376 (464)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 376 (464)
+..+++|+.|++++|.+.... .+ ..+++|++|+++++ .+..... .....+++|++|++++| .++..... ....
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~ 131 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS--AL-KELTNLTYLILTGN-QLQSLPN-GVFDKLTNLKELVLVEN-QLQSLPDG-VFDK 131 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG--GG-TTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTT-TTTT
T ss_pred cccCCCCcEEECCCCCCCCch--hh-cCCCCCCEEECCCC-ccCccCh-hHhcCCcCCCEEECCCC-cCCccCHH-Hhcc
Confidence 445566666666666544321 22 25667777777764 3332111 11235678888888875 44422111 1236
Q ss_pred CCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcc
Q 012414 377 CRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLR 456 (464)
Q Consensus 377 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 456 (464)
+++|+.|++++|. ++.... .....+++|+.|++++ +.++......+..+++|+.|++++| .++.... ..+..+++
T Consensus 132 l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~ 206 (272)
T 3rfs_A 132 LTNLTYLNLAHNQ-LQSLPK-GVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTS 206 (272)
T ss_dssp CTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTT
T ss_pred CCCCCEEECCCCc-cCccCH-HHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCC-cCCccCH-HHHhCCcC
Confidence 7899999999975 543221 1224689999999999 4887665555678999999999999 6654322 22367899
Q ss_pred cceeeecC
Q 012414 457 IQGLDLYK 464 (464)
Q Consensus 457 L~~l~l~~ 464 (464)
|+.|++++
T Consensus 207 L~~L~l~~ 214 (272)
T 3rfs_A 207 LQYIWLHD 214 (272)
T ss_dssp CCEEECCS
T ss_pred CCEEEccC
Confidence 99999864
No 96
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=3.7e-10 Score=101.24 Aligned_cols=161 Identities=16% Similarity=0.104 Sum_probs=90.0
Q ss_pred HHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHH-hCCCCcEEecCCCC-----CCCHH
Q 012414 269 SVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISF-NCKSLVEIGLSKCL-----GVTNT 342 (464)
Q Consensus 269 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~-----~~~~~ 342 (464)
.++..+|+|+.|.+.++.. ... ..+ .+++|+.|++..+.++...+..+.. .+|+|+.|+++.+. .....
T Consensus 166 ~ll~~~P~L~~L~L~g~~~-l~l---~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNN-LSI---GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HHHHTCTTCCEEEEECCBT-CBC---CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHhcCCCCcEEEEeCCCC-cee---ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4444555666666654421 110 001 2556777777666666666666553 46777777764211 00011
Q ss_pred HHHHHH--hcCCCCcEEeccCCCCCChHHHHHHHh--cCCCCcEEeccCCCCCcHHHHHHHHh---cCCCccEEecCCCC
Q 012414 343 GITQLV--SGCVNLKTIDLTCCHSITDDAISAIAD--SCRGLVCLKIESCNMITEKGLYQLGS---FCLRLEEIDLTDCN 415 (464)
Q Consensus 343 ~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~c~ 415 (464)
.+.... ..+|+|+.|++.+| .+.+.....++. .+|+|++|+++.+ .+++.+...+.. .+++|+.|++++|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n- 317 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN- 317 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-
T ss_pred HHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-
Confidence 111111 23677777777765 455554444443 3567777777654 477776666553 3577777777774
Q ss_pred CCChHHHHHhhc-CCCccEEecCCc
Q 012414 416 GVNDKGLEYLSR-CSELLFLKLGLC 439 (464)
Q Consensus 416 ~i~~~~~~~l~~-~~~L~~L~l~~~ 439 (464)
.+++++++.+.. + ...++++.+
T Consensus 318 ~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 318 YLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp BCCHHHHHHHHHHC--CSEEECCSB
T ss_pred cCCHHHHHHHHHHc--CCEEEecCC
Confidence 677777777664 3 344666665
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.10 E-value=7.8e-11 Score=113.43 Aligned_cols=170 Identities=18% Similarity=0.158 Sum_probs=123.6
Q ss_pred CCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCC
Q 012414 248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS 327 (464)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 327 (464)
+++|+.|.++++. +... . -+..+++|+.|+++++.. .... .+..+++|+.|++++|.+.... .+ ..+++
T Consensus 42 L~~L~~L~l~~n~-i~~l--~-~l~~l~~L~~L~Ls~N~l--~~~~--~l~~l~~L~~L~Ls~N~l~~l~--~l-~~l~~ 110 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSV--Q-GIQYLPNVTKLFLNGNKL--TDIK--PLTNLKNLGWLFLDENKIKDLS--SL-KDLKK 110 (605)
T ss_dssp HTTCCCCBCTTCC-CCCC--T-TGGGCTTCCEEECTTSCC--CCCG--GGGGCTTCCEEECCSSCCCCCT--TS-TTCTT
T ss_pred CCCCCEEECcCCC-CCCC--h-HHccCCCCCEEEeeCCCC--CCCh--hhccCCCCCEEECcCCCCCCCh--hh-ccCCC
Confidence 6889999998865 3221 1 245689999999998863 2211 2788999999999999876532 23 37889
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCcc
Q 012414 328 LVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLE 407 (464)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 407 (464)
|+.|+++++. +.+. .. +..+++|+.|++++| .+++. . ....+++|+.|++++|. ++.... ...+++|+
T Consensus 111 L~~L~Ls~N~-l~~l--~~-l~~l~~L~~L~Ls~N-~l~~l--~-~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~ 178 (605)
T 1m9s_A 111 LKSLSLEHNG-ISDI--NG-LVHLPQLESLYLGNN-KITDI--T-VLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQ 178 (605)
T ss_dssp CCEEECTTSC-CCCC--GG-GGGCTTCSEEECCSS-CCCCC--G-GGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCC
T ss_pred CCEEEecCCC-CCCC--cc-ccCCCccCEEECCCC-ccCCc--h-hhcccCCCCEEECcCCc-CCCchh---hccCCCCC
Confidence 9999999864 5442 22 347899999999986 55543 2 23378999999999876 443322 45789999
Q ss_pred EEecCCCCCCChHHHHHhhcCCCccEEecCCccCCCh
Q 012414 408 EIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 444 (464)
Q Consensus 408 ~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~ 444 (464)
.|+|++ +.+++. ..+..+++|+.|++++| .+..
T Consensus 179 ~L~Ls~-N~i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 179 NLYLSK-NHISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp EEECCS-SCCCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred EEECcC-CCCCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 999999 478764 46778999999999998 4443
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.10 E-value=1.6e-10 Score=101.28 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=124.8
Q ss_pred hcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhc
Q 012414 220 ATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRD 299 (464)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 299 (464)
..+++|+.|+++++. +... ..+ ..+++|++|+++++. +..... +..+++|++|+++++.. .. ...+..
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~--~~~-~~l~~L~~L~L~~n~-l~~~~~---l~~l~~L~~L~l~~n~l--~~--~~~l~~ 110 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSV--QGI-QYLPNVTKLFLNGNK-LTDIKP---LANLKNLGWLFLDENKV--KD--LSSLKD 110 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCC--TTG-GGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCC--CC--GGGGTT
T ss_pred hhcCcccEEEccCCC-cccC--hhH-hcCCCCCEEEccCCc-cCCCcc---cccCCCCCEEECCCCcC--CC--Chhhcc
Confidence 457889999999864 3332 123 348999999999875 333221 56789999999998873 32 234788
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCC
Q 012414 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (464)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 379 (464)
+++|+.|++++|.+.+. ..+ ..+++|+.|+++++ .+... .....+++|+.|++++| .+++... ...+++
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l-~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~ 179 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGL-VHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTK 179 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGG-GGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTT
T ss_pred CCCCCEEECCCCcCCCC--hhh-cCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccchh---hcCCCc
Confidence 99999999999987663 223 37899999999986 45543 23457899999999986 5554322 347899
Q ss_pred CcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHH
Q 012414 380 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGL 422 (464)
Q Consensus 380 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~ 422 (464)
|+.|++++|. +++.. . ...+++|+.|++++ +.+++...
T Consensus 180 L~~L~L~~N~-i~~l~--~-l~~l~~L~~L~l~~-n~i~~~~~ 217 (291)
T 1h6t_A 180 LQNLYLSKNH-ISDLR--A-LAGLKNLDVLELFS-QECLNKPI 217 (291)
T ss_dssp CCEEECCSSC-CCBCG--G-GTTCTTCSEEEEEE-EEEECCCE
T ss_pred cCEEECCCCc-CCCCh--h-hccCCCCCEEECcC-CcccCCcc
Confidence 9999999975 55432 2 34789999999999 46655433
No 99
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.10 E-value=5.6e-12 Score=110.43 Aligned_cols=208 Identities=12% Similarity=0.026 Sum_probs=134.6
Q ss_pred hhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHh
Q 012414 219 IATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR 298 (464)
Q Consensus 219 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 298 (464)
+.++++++++++.+.. +..... ...++++.|+++++. +.... ...+..+++|++|+++++.. ... ....
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~----~~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~n~l--~~~--~~~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPP----DLPKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDRAEL--TKL--QVDG 74 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCS----CCCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTTSCC--CEE--ECCS
T ss_pred ccccCCccEEECCCCC-CCcCCC----CCCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCCCcc--Ccc--cCCC
Confidence 3457889999988743 332110 114789999999864 33221 12345689999999998863 221 1125
Q ss_pred cCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCC
Q 012414 299 DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCR 378 (464)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 378 (464)
.+++|+.|++++|.+.... .....+++|+.|+++++ .++..... .+..+++|++|+++++ .++.... .....++
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~ 148 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFN-RLTSLPLG-ALRGLGELQELYLKGN-ELKTLPP-GLLTPTP 148 (290)
T ss_dssp CCTTCCEEECCSSCCSSCC--CCTTTCTTCCEEECCSS-CCCCCCSS-TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCT
T ss_pred CCCcCCEEECCCCcCCcCc--hhhccCCCCCEEECCCC-cCcccCHH-HHcCCCCCCEEECCCC-CCCccCh-hhccccc
Confidence 7889999999999765321 22246789999999985 45432111 2246789999999985 4543211 1223578
Q ss_pred CCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHH
Q 012414 379 GLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGL 447 (464)
Q Consensus 379 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~ 447 (464)
+|+.|+++++. ++.... .....+++|+.|++++ +.++... ..+...++|+.+++++|+...+..+
T Consensus 149 ~L~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~-N~l~~ip-~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 149 KLEKLSLANNN-LTELPA-GLLNGLENLDTLLLQE-NSLYTIP-KGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TCCEEECTTSC-CSCCCT-TTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCEEECCCCc-CCccCH-HHhcCcCCCCEEECCC-CcCCccC-hhhcccccCCeEEeCCCCccCcCcc
Confidence 99999999875 443221 2234678999999999 6776432 3345678999999999865544433
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.08 E-value=8.4e-13 Score=112.52 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=6.4
Q ss_pred CCccEEEecCC
Q 012414 96 RSLKSLILSRS 106 (464)
Q Consensus 96 ~~L~~L~l~~~ 106 (464)
..++.|+++++
T Consensus 31 ~~l~~L~l~~n 41 (239)
T 2xwt_C 31 PSTQTLKLIET 41 (239)
T ss_dssp TTCCEEEEESC
T ss_pred CcccEEEEeCC
Confidence 35666666654
No 101
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=3.3e-10 Score=101.59 Aligned_cols=152 Identities=15% Similarity=0.193 Sum_probs=110.9
Q ss_pred HHHHhcCCCCcEEEcCCCC-CChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh-cCCCCcEEeccCCCC--CCh--
Q 012414 294 LHHMRDLKNLEAITMDGAR-ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVS-GCVNLKTIDLTCCHS--ITD-- 367 (464)
Q Consensus 294 ~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~--l~~-- 367 (464)
...+..+|+|+.|.+.++. +. +..+ ..++|+.|.+..| .+++..+..+.. .+|+|++|+++.+.+ ..+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred HHHHhcCCCCcEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence 3556788999999998872 21 1111 3789999999875 588888777754 689999999863211 111
Q ss_pred -HHHHHHH--hcCCCCcEEeccCCCCCcHHHHHHHHh--cCCCccEEecCCCCCCChHHHHHhh----cCCCccEEecCC
Q 012414 368 -DAISAIA--DSCRGLVCLKIESCNMITEKGLYQLGS--FCLRLEEIDLTDCNGVNDKGLEYLS----RCSELLFLKLGL 438 (464)
Q Consensus 368 -~~~~~l~--~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~c~~i~~~~~~~l~----~~~~L~~L~l~~ 438 (464)
..+..+. ..+|+|+.|++.+|. +++.+...++. .+++|+.|+|+. +.+++.+...+. .+++|+.|++++
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCC
Confidence 1122222 247999999999876 67666666654 478999999988 699998877765 369999999999
Q ss_pred ccCCChHHHHHHHhcC
Q 012414 439 CENISDKGLFYIASNC 454 (464)
Q Consensus 439 ~~~i~~~~~~~~~~~~ 454 (464)
| .+++.+++.+.+.+
T Consensus 317 n-~i~d~~~~~l~~al 331 (362)
T 2ra8_A 317 N-YLSDEMKKELQKSL 331 (362)
T ss_dssp B-BCCHHHHHHHHHHC
T ss_pred C-cCCHHHHHHHHHHc
Confidence 9 89999999887644
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.07 E-value=1.1e-12 Score=111.73 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=5.3
Q ss_pred CCcEEecCC
Q 012414 148 GLKEVKLDK 156 (464)
Q Consensus 148 ~L~~L~l~~ 156 (464)
+|++|++++
T Consensus 32 ~l~~L~l~~ 40 (239)
T 2xwt_C 32 STQTLKLIE 40 (239)
T ss_dssp TCCEEEEES
T ss_pred cccEEEEeC
Confidence 556666655
No 103
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.07 E-value=8.5e-09 Score=83.36 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=79.3
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCcEEeccCCCCCChHHHHHHHh---cCCCCcEEeccCCCCCcHH
Q 012414 321 ISFNCKSLVEIGLSKCLGVTNTGITQLV---SGCVNLKTIDLTCCHSITDDAISAIAD---SCRGLVCLKIESCNMITEK 394 (464)
Q Consensus 321 l~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~ 394 (464)
+...+++|++|++++|..+.+.+...+. ...++|++|++++| .+++.+...++. ..++|++|++++|. +++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 3334555666666554345555444433 23467777777774 577766655543 34678888888765 7777
Q ss_pred HHHHHHhc---CCCccEEec--CCCCCCChHHHHHhh----cCCCccEEecCCccCCChHH
Q 012414 395 GLYQLGSF---CLRLEEIDL--TDCNGVNDKGLEYLS----RCSELLFLKLGLCENISDKG 446 (464)
Q Consensus 395 ~~~~l~~~---~~~L~~L~l--~~c~~i~~~~~~~l~----~~~~L~~L~l~~~~~i~~~~ 446 (464)
+...++.. .++|++|++ ++ +.+++++...+. ..++|++|++++| .+++.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 77666643 467888888 56 688887766554 3688888888888 676655
No 104
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.06 E-value=5e-09 Score=84.73 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=96.6
Q ss_pred HHHHHHhcCCCCcEEeccCCCCCChHHHHHHHh---cCCCCcEEeccCCCCCcHHHHHHHHh---cCCCccEEecCCCCC
Q 012414 343 GITQLVSGCVNLKTIDLTCCHSITDDAISAIAD---SCRGLVCLKIESCNMITEKGLYQLGS---FCLRLEEIDLTDCNG 416 (464)
Q Consensus 343 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~c~~ 416 (464)
.+.......++|++|++++|..+++.+...++. ..++|++|++++|. +++.+...++. ..++|++|+|++ +.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~-N~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES-NF 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS-SC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC-Cc
Confidence 455566678999999999865899988777664 36899999999986 99988777654 457999999999 69
Q ss_pred CChHHHHHhh----cCCCccEEec--CCccCCChHHHHHHH---hcCcccceeeecC
Q 012414 417 VNDKGLEYLS----RCSELLFLKL--GLCENISDKGLFYIA---SNCLRIQGLDLYK 464 (464)
Q Consensus 417 i~~~~~~~l~----~~~~L~~L~l--~~~~~i~~~~~~~~~---~~~~~L~~l~l~~ 464 (464)
+++.+...++ ..++|++|++ ++| .+++.+...+. +..+.|++|++++
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 9999877665 4789999999 778 89998866554 4678899999864
No 105
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=6.8e-12 Score=112.35 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=79.9
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCC
Q 012414 325 CKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCL 404 (464)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 404 (464)
..+++.+.+.+ .+.......+...+++|+.+++.++ .++.-.-.. ..+|++|++|++.+. ++..+-..+ ..|+
T Consensus 201 ~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~aF-~~~~ 273 (329)
T 3sb4_A 201 PRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQRVF-SNCG 273 (329)
T ss_dssp GGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTT-TTTCTTCCEEECCTT--CCEECTTTT-TTCT
T ss_pred ccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHhh-hhCCCCCCEEECCcc--cceehHHHh-hCCh
Confidence 34566666664 2555555555556788888888863 333222122 236788888888763 443332222 3788
Q ss_pred Ccc-EEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceee
Q 012414 405 RLE-EIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLD 461 (464)
Q Consensus 405 ~L~-~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~ 461 (464)
+|+ .+.+.+ .++...-.+|.+|++|+.+++.++ .++..+-.++ .+|++|+.|.
T Consensus 274 ~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 274 RLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp TCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTT-CTTCCCCEEE
T ss_pred hccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhh-cCCcchhhhc
Confidence 888 888877 565555567778889999998776 5554433333 6788888875
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.05 E-value=3.4e-10 Score=109.04 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=126.8
Q ss_pred hhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHh
Q 012414 219 IATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR 298 (464)
Q Consensus 219 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 298 (464)
+..+++|+.|+++++. +... ..+ ..+++|+.|+++++....... +..+++|+.|+++++.. .. +..+.
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l--~~l-~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l--~~--l~~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSV--QGI-QYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKI--KD--LSSLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCC--TTG-GGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCC--CC--CTTST
T ss_pred hhcCCCCCEEECcCCC-CCCC--hHH-ccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCC--CC--Chhhc
Confidence 3467899999999864 3332 123 348999999999875322222 56799999999999874 32 23577
Q ss_pred cCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCC
Q 012414 299 DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCR 378 (464)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 378 (464)
.+++|+.|++++|.+... ..+ ..+++|+.|++++| .+... ..+..+++|+.|++++| .+++... ...++
T Consensus 107 ~l~~L~~L~Ls~N~l~~l--~~l-~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~ 175 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDI--NGL-VHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLT 175 (605)
T ss_dssp TCTTCCEEECTTSCCCCC--GGG-GGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTCT
T ss_pred cCCCCCEEEecCCCCCCC--ccc-cCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh---hccCC
Confidence 899999999999987653 223 37899999999986 45543 33457899999999986 5554322 34789
Q ss_pred CCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHH
Q 012414 379 GLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGL 422 (464)
Q Consensus 379 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~ 422 (464)
+|+.|++++|. +++. .. ...+++|+.|+|++| .+....+
T Consensus 176 ~L~~L~Ls~N~-i~~l--~~-l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 176 KLQNLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp TCCEEECCSSC-CCBC--GG-GTTCTTCSEEECCSE-EEECCCC
T ss_pred CCCEEECcCCC-CCCC--hH-HccCCCCCEEEccCC-cCcCCcc
Confidence 99999999986 5543 22 347899999999994 6655443
No 107
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.03 E-value=1.4e-11 Score=107.90 Aligned_cols=177 Identities=19% Similarity=0.153 Sum_probs=91.2
Q ss_pred CCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCc
Q 012414 199 LDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLL 278 (464)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 278 (464)
++++.|++++|.++......+..+++|+.|+++++. +...... ..+++|++|+++++. +.. +...+..+++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~ 103 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD---GTLPVLGTLDLSHNQ-LQS--LPLLGQTLPALT 103 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC---SCCTTCCEEECCSSC-CSS--CCCCTTTCTTCC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC---CCCCcCCEEECCCCc-CCc--CchhhccCCCCC
Confidence 345555555554444333445555566666665532 2221110 235666666666543 211 111223456677
Q ss_pred EEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEe
Q 012414 279 QLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTID 358 (464)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 358 (464)
+|+++++. +.......+..+++|+.|++++|.+.......+ ..+++|+.|+++++ .++.... .....+++|+.|+
T Consensus 104 ~L~l~~N~--l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 104 VLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLL-TPTPKLEKLSLANN-NLTELPA-GLLNGLENLDTLL 178 (290)
T ss_dssp EEECCSSC--CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTS-CCSCCCT-TTTTTCTTCCEEE
T ss_pred EEECCCCc--CcccCHHHHcCCCCCCEEECCCCCCCccChhhc-ccccCCCEEECCCC-cCCccCH-HHhcCcCCCCEEE
Confidence 77777665 232222345567777777777776543222111 25677788888764 3432111 1223567788888
Q ss_pred ccCCCCCChHHHHHHHhcCCCCcEEeccCCCC
Q 012414 359 LTCCHSITDDAISAIADSCRGLVCLKIESCNM 390 (464)
Q Consensus 359 l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 390 (464)
++++ .++. +..-....++|+.|++++++.
T Consensus 179 L~~N-~l~~--ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 179 LQEN-SLYT--IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSS-CCCC--CCTTTTTTCCCSEEECCSCCB
T ss_pred CCCC-cCCc--cChhhcccccCCeEEeCCCCc
Confidence 8774 4431 111111346788888887664
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.00 E-value=3e-11 Score=103.67 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=42.2
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCC
Q 012414 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCS 429 (464)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 429 (464)
.+++|++|+++++ .++..... ....+++|+.|+++++. ++..... ....+++|+.|++++ +.++......+..++
T Consensus 105 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 105 HLTQLDKLYLGGN-QLKSLPSG-VFDRLTKLKELRLNTNQ-LQSIPAG-AFDKLTNLQTLSLST-NQLQSVPHGAFDRLG 179 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred ccCCCCEEEcCCC-cCCCcChh-HhccCCcccEEECcCCc-CCccCHH-HcCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence 3455555555553 33311111 11235566666666543 3321111 122456667777766 455544444455566
Q ss_pred CccEEecCCc
Q 012414 430 ELLFLKLGLC 439 (464)
Q Consensus 430 ~L~~L~l~~~ 439 (464)
+|+.|++++|
T Consensus 180 ~L~~L~l~~N 189 (251)
T 3m19_A 180 KLQTITLFGN 189 (251)
T ss_dssp TCCEEECCSC
T ss_pred CCCEEEeeCC
Confidence 7777777666
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.97 E-value=2.5e-10 Score=89.15 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=61.8
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChH-HHHHhhcC
Q 012414 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDK-GLEYLSRC 428 (464)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~-~~~~l~~~ 428 (464)
.+++|+.|++++| .++.. .....+++|+.|++++|. ++.. +......+++|+.|++++ +.+++. ....+..+
T Consensus 40 ~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~-N~i~~~~~~~~~~~l 112 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKL 112 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTT-SCCCSHHHHGGGGGC
T ss_pred hcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCC-CcCCChHHHHHHhhC
Confidence 4455666666554 33332 112245667777776654 3331 223344577788888877 466654 23556677
Q ss_pred CCccEEecCCccCCChHHH--HHHHhcCcccceeeecC
Q 012414 429 SELLFLKLGLCENISDKGL--FYIASNCLRIQGLDLYK 464 (464)
Q Consensus 429 ~~L~~L~l~~~~~i~~~~~--~~~~~~~~~L~~l~l~~ 464 (464)
++|++|++++| .++.... ...+..+|+|+.|++++
T Consensus 113 ~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 113 ENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 88888888877 5544321 23456778888877753
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.97 E-value=5e-10 Score=87.48 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=15.7
Q ss_pred CCCCcEEEccCcccChh-HHHHhhcccCCceeEecC
Q 012414 198 CLDLKSLDVSYLKLTND-SFCSIATLAKLESLVMVG 232 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~ 232 (464)
+++|+.|++++|.+++. ....+..+++|++|++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 44444444444444432 123344455555555544
No 111
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.96 E-value=3.5e-10 Score=69.95 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=35.7
Q ss_pred CCCccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhccc
Q 012414 3 GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (464)
Q Consensus 3 ~~~~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~ 45 (464)
+...|..||+|++.+||+||+ .+|+.+++.|||+|+.++...
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~~ 46 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDE 46 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTCG
T ss_pred CCCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCh
Confidence 456899999999999999999 999999999999999987643
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.95 E-value=4.4e-11 Score=102.59 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=85.0
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcC
Q 012414 324 NCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFC 403 (464)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 403 (464)
.+++|+.|+++++ .+...... .+..+++|++|+++++ .++..... ....+++|+.|+++++. ++.... .....+
T Consensus 57 ~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l 130 (251)
T 3m19_A 57 GLTKLTWLNLDYN-QLQTLSAG-VFDDLTELGTLGLANN-QLASLPLG-VFDHLTQLDKLYLGGNQ-LKSLPS-GVFDRL 130 (251)
T ss_dssp TCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCT-TTTTTC
T ss_pred CcccCCEEECCCC-cCCccCHh-HhccCCcCCEEECCCC-cccccChh-HhcccCCCCEEEcCCCc-CCCcCh-hHhccC
Confidence 4556666666553 23321111 1235677888888774 44422111 12367999999999875 543221 122367
Q ss_pred CCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 404 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 404 ~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
++|+.|++++ +.++......+..+++|+.|++++| .++...... +..+++|+.|++++
T Consensus 131 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 131 TKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGA-FDRLGKLQTITLFG 188 (251)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCS
T ss_pred CcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHH-HhCCCCCCEEEeeC
Confidence 9999999999 5887665556778999999999999 665433222 36789999999864
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=1.4e-11 Score=110.33 Aligned_cols=292 Identities=13% Similarity=0.055 Sum_probs=153.5
Q ss_pred CCCCcEEecCCCCCCChHHHHHhhc-CCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhc--
Q 012414 121 CPLLESVDLSYCCGFGDREAAALSF-ASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKK-- 197 (464)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-- 197 (464)
.+++++|.+++. +.......+.. +++|+.|++++. .+...... ...++.++.+.+... .+.+. .+..
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~--~~~~~~~~~~~~~~~-~I~~~----aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGK--AGTYPNGKFYIYMAN-FVPAY----AFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEES--SSSSGGGCCEEECTT-EECTT----TTEEEE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcc-eeEEecCc--ccccccccccccccc-ccCHH----Hhcccc
Confidence 347788888763 44455556655 778888888762 33300000 000111122222111 11111 1124
Q ss_pred ------CCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeeccccccc-ChhHHH-H
Q 012414 198 ------CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFV-SSTGLI-S 269 (464)
Q Consensus 198 ------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~~~~-~ 269 (464)
|++|+++++.. .+....-..+..+++|+.+.+.+.. +...+-.++.. +.++..+........ ....+. .
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcC-CCceEEecCcchhhhhcccccccc
Confidence 66777777766 4443333445566777777776532 21111111111 444444443221000 000000 0
Q ss_pred HHhcCCCCc-EEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHH
Q 012414 270 VIRGHSGLL-QLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLV 348 (464)
Q Consensus 270 ~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 348 (464)
.+..+..|+ .+.+..... +.......-....+++.+.+.+. +.......+...|++|+.++++++ .+...+-..+
T Consensus 171 ~f~~~~~L~~~i~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF- 246 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGK-LEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTF- 246 (329)
T ss_dssp CEEESCCCEEEEEECTTCC-HHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTT-
T ss_pred ccccccccceeEEecCCCc-HHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhh-
Confidence 012344555 444443332 33323222223456777777665 555666666667899999999873 3443333333
Q ss_pred hcCCCCcEEeccCCCCCChHHHHHHHhcCCCCc-EEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhc
Q 012414 349 SGCVNLKTIDLTCCHSITDDAISAIADSCRGLV-CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR 427 (464)
Q Consensus 349 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 427 (464)
..|.+|+++++.+. +..-.-.. ..+|++|+ .+++.+ .++..+-..+ ..|++|+.|++.+ +.++...-.+|.+
T Consensus 247 ~~~~~L~~l~l~~n--i~~I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF-~~c~~L~~l~l~~-n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN--LKTIGQRV-FSNCGRLAGTLELPA--SVTAIEFGAF-MGCDNLRYVLATG-DKITTLGDELFGN 319 (329)
T ss_dssp TTCTTCCEEECCTT--CCEECTTT-TTTCTTCCEEEEECT--TCCEECTTTT-TTCTTEEEEEECS-SCCCEECTTTTCT
T ss_pred hCCCCCCEEECCcc--cceehHHH-hhCChhccEEEEEcc--cceEEchhhh-hCCccCCEEEeCC-CccCccchhhhcC
Confidence 47889999999862 43322222 23788999 999976 3444333333 3799999999987 6888777778889
Q ss_pred CCCccEEec
Q 012414 428 CSELLFLKL 436 (464)
Q Consensus 428 ~~~L~~L~l 436 (464)
|++|+.++.
T Consensus 320 ~~~L~~ly~ 328 (329)
T 3sb4_A 320 GVPSKLIYK 328 (329)
T ss_dssp TCCCCEEEC
T ss_pred Ccchhhhcc
Confidence 999999874
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=8.6e-10 Score=94.99 Aligned_cols=144 Identities=18% Similarity=0.227 Sum_probs=103.9
Q ss_pred cCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012414 273 GHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCV 352 (464)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 352 (464)
.+++|++|+++++.. ... ..+..+++|+.|++++|.+.+... ...+++|+.|+++++ .+.. +..+. . +
T Consensus 39 ~l~~L~~L~l~~n~i--~~l--~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~~-~-~ 106 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNI--QSL--AGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRN-RLKN--LNGIP-S-A 106 (263)
T ss_dssp HHTTCSEEECTTSCC--CCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTCC-C-S
T ss_pred hcCcCcEEECcCCCc--ccc--hHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCC-ccCC--cCccc-c-C
Confidence 468899999998863 321 257788999999999998765443 347889999999885 3443 11221 2 7
Q ss_pred CCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCcc
Q 012414 353 NLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELL 432 (464)
Q Consensus 353 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~ 432 (464)
+|+.|+++++ .+++. .. ...+++|+.|+++++. +++.. ....+++|+.|++++ +.+++. ..+..+++|+
T Consensus 107 ~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~-N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHG-NEITNT--GGLTRLKKVN 175 (263)
T ss_dssp SCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTT-SCCCBC--TTSTTCCCCC
T ss_pred cccEEEccCC-ccCCC--hh-hcCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCC-CcCcch--HHhccCCCCC
Confidence 8999999986 55542 22 3368899999998876 55432 234688999999999 577765 5667789999
Q ss_pred EEecCCc
Q 012414 433 FLKLGLC 439 (464)
Q Consensus 433 ~L~l~~~ 439 (464)
.|++++|
T Consensus 176 ~L~l~~N 182 (263)
T 1xeu_A 176 WIDLTGQ 182 (263)
T ss_dssp EEEEEEE
T ss_pred EEeCCCC
Confidence 9999888
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.85 E-value=2e-10 Score=91.78 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=52.2
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcC
Q 012414 324 NCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFC 403 (464)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 403 (464)
.+++|+.|++++|. +... ..+..+++|+.|++++| .++.. +......+++|+.|++++|. ++..........+
T Consensus 47 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l 119 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKL 119 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSC
T ss_pred hCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcC
Confidence 34455555555432 3322 11224556666666654 33321 22223245666666666654 3332111122355
Q ss_pred CCccEEecCCCCCCChHHH---HHhhcCCCccEEecCCc
Q 012414 404 LRLEEIDLTDCNGVNDKGL---EYLSRCSELLFLKLGLC 439 (464)
Q Consensus 404 ~~L~~L~l~~c~~i~~~~~---~~l~~~~~L~~L~l~~~ 439 (464)
++|+.|++++ +.++.... ..+..+++|+.|++.+|
T Consensus 120 ~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 120 ECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 6666666666 35543332 34455667777776666
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=3.5e-09 Score=91.16 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=115.1
Q ss_pred ccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCC
Q 012414 222 LAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLK 301 (464)
Q Consensus 222 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 301 (464)
+.+++.+.+.+. .+.+.. .+.. +++|+.|+++++. +.... .+..+++|++|+++++.. ..... +..++
T Consensus 18 l~~l~~l~l~~~-~i~~~~--~~~~-l~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~ 85 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV--SQKE-LSGVQNFNGDNSN-IQSLA---GMQFFTNLKELHLSHNQI--SDLSP--LKDLT 85 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE--CHHH-HTTCSEEECTTSC-CCCCT---TGGGCTTCCEEECCSSCC--CCCGG--GTTCS
T ss_pred HHHHHHHHhcCC-Cccccc--chhh-cCcCcEEECcCCC-cccch---HHhhCCCCCEEECCCCcc--CCChh--hccCC
Confidence 344455555543 233322 1223 7899999999874 33322 245689999999998863 32211 78899
Q ss_pred CCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCc
Q 012414 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381 (464)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 381 (464)
+|+.|++++|.+.... .+. . ++|+.|+++++ .+++. .. ...+++|+.|+++++ .+++.. . ...+++|+
T Consensus 86 ~L~~L~L~~N~l~~l~--~~~-~-~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~--~-l~~l~~L~ 153 (263)
T 1xeu_A 86 KLEELSVNRNRLKNLN--GIP-S-ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSIV--M-LGFLSKLE 153 (263)
T ss_dssp SCCEEECCSSCCSCCT--TCC-C-SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBCG--G-GGGCTTCC
T ss_pred CCCEEECCCCccCCcC--ccc-c-CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCCh--H-HccCCCCC
Confidence 9999999999876532 121 2 89999999986 45543 22 357899999999985 566532 2 33689999
Q ss_pred EEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChH
Q 012414 382 CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDK 420 (464)
Q Consensus 382 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~ 420 (464)
.|++++|. +++. .....+++|+.|++++ +.++..
T Consensus 154 ~L~L~~N~-i~~~---~~l~~l~~L~~L~l~~-N~~~~~ 187 (263)
T 1xeu_A 154 VLDLHGNE-ITNT---GGLTRLKKVNWIDLTG-QKCVNE 187 (263)
T ss_dssp EEECTTSC-CCBC---TTSTTCCCCCEEEEEE-EEEECC
T ss_pred EEECCCCc-Ccch---HHhccCCCCCEEeCCC-CcccCC
Confidence 99999976 5544 2334789999999999 466544
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.80 E-value=4.7e-10 Score=89.64 Aligned_cols=62 Identities=23% Similarity=0.177 Sum_probs=30.5
Q ss_pred cCCCCcEEEccCcccChh-HHHHhhcccCCceeEecCCCCCChh-H-HHHHHhcCCCCceeecccc
Q 012414 197 KCLDLKSLDVSYLKLTND-SFCSIATLAKLESLVMVGCPCVDDT-G-LRFLESGCPLLKTIFVSRC 259 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~-~-~~~l~~~~~~L~~L~l~~~ 259 (464)
.+++|+.|++++|.++.. .+..+..+++|+.|+++++. +... . .......+++|+.|+++++
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 355555555555554442 22345556666666666543 2211 1 1112233666777666654
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.72 E-value=2.6e-10 Score=109.16 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=103.1
Q ss_pred HHHHhcCCCCcEEE-cCCCCCC--------hHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCC
Q 012414 294 LHHMRDLKNLEAIT-MDGARIS--------DSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHS 364 (464)
Q Consensus 294 ~~~~~~~~~L~~L~-l~~~~~~--------~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 364 (464)
...+..+++|+.|+ ++.+.+. ...+..+. ...|+.|+++++ .++. +.. +..+++|+.|+++++ .
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~ 474 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-R 474 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-C
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-c
Confidence 34455566666666 4433211 11222222 246999999985 4544 223 457889999999985 5
Q ss_pred CChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHH-HHHhhcCCCccEEecCCccCCC
Q 012414 365 ITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKG-LEYLSRCSELLFLKLGLCENIS 443 (464)
Q Consensus 365 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~-~~~l~~~~~L~~L~l~~~~~i~ 443 (464)
++. +......+++|+.|+++++. ++.. . -...+++|+.|++++ +.++... ...+..+++|+.|++++| .++
T Consensus 475 l~~--lp~~~~~l~~L~~L~Ls~N~-l~~l--p-~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~ 546 (567)
T 1dce_A 475 LRA--LPPALAALRCLEVLQASDNA-LENV--D-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLC 546 (567)
T ss_dssp CCC--CCGGGGGCTTCCEEECCSSC-CCCC--G-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGG
T ss_pred ccc--cchhhhcCCCCCEEECCCCC-CCCC--c-ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCC
Confidence 552 21223378999999999976 5542 2 234789999999999 6887764 567888999999999999 554
Q ss_pred hH--HHHHHHhcCcccceeee
Q 012414 444 DK--GLFYIASNCLRIQGLDL 462 (464)
Q Consensus 444 ~~--~~~~~~~~~~~L~~l~l 462 (464)
.. ....+...+|+|+.|++
T Consensus 547 ~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 547 QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GSSSCTTHHHHHCTTCSEEEC
T ss_pred CCccHHHHHHHHCcccCccCC
Confidence 32 24455667899999875
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.70 E-value=9.8e-10 Score=91.20 Aligned_cols=59 Identities=17% Similarity=0.123 Sum_probs=30.2
Q ss_pred CCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012414 275 SGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKC 336 (464)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 336 (464)
++|++|+++++. +.......+..+++|+.|+++++.+.......+ ..+++|++|+++++
T Consensus 28 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 28 AQTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTN 86 (208)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred CCCcEEEcCCCc--cCcCChhhhcccccCcEEECCCCccCccChhhc-CCCCCcCEEECCCC
Confidence 467777777665 232222334556666666666665443211111 24455666666553
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.68 E-value=1.2e-09 Score=98.95 Aligned_cols=142 Identities=18% Similarity=0.084 Sum_probs=71.5
Q ss_pred cCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCC
Q 012414 299 DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCR 378 (464)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 378 (464)
.+++|+.|++++|.+.......+. .+++|+.|+++++ .+...... .+..+++|+.|+++++ .++...... ...++
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~ 136 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSN-HLHTLDEF-LFSDLQALEVLLLYNN-HIVVVDRNA-FEDMA 136 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEECTTT-TTTCT
T ss_pred cccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCC-cCCcCCHH-HhCCCcCCCEEECCCC-cccEECHHH-hCCcc
Confidence 344555555555544332211111 4455555555553 23321111 1234566666666663 333221111 12466
Q ss_pred CCcEEeccCCCCCcHHHHHHH--HhcCCCccEEecCCCCCCChHHHHHhhcCCC--ccEEecCCccCCChHHH
Q 012414 379 GLVCLKIESCNMITEKGLYQL--GSFCLRLEEIDLTDCNGVNDKGLEYLSRCSE--LLFLKLGLCENISDKGL 447 (464)
Q Consensus 379 ~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~--L~~L~l~~~~~i~~~~~ 447 (464)
+|+.|+++++. ++......+ ...+++|+.|+|++ +.++......+..++. ++.|++.+|+-.-+..+
T Consensus 137 ~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 137 QLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp TCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred cCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 77777777654 332211111 02467888888888 6777666666666766 47788888754444443
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.66 E-value=1.7e-09 Score=90.44 Aligned_cols=70 Identities=17% Similarity=0.027 Sum_probs=39.5
Q ss_pred cCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHH
Q 012414 376 SCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLF 448 (464)
Q Consensus 376 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~ 448 (464)
.+++|+.|+++++. ++...... ...+++|+.|++++ +.++......+..+++|+.|++++|+-..+..+.
T Consensus 102 ~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 102 GLFSLQLLLLNANK-INCLRVDA-FQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCEEECCCCC-CCEeCHHH-cCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 45666666666643 33221111 22566777777777 5666555445566777777777777543333333
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.65 E-value=1.5e-10 Score=104.55 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=107.3
Q ss_pred CCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcE
Q 012414 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQ 279 (464)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (464)
++++|++++|.++......+.++++|++|+++++..........+ .+++++.++.+.++..+.... ...+..+++|++
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~ 108 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQY 108 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcccCCcccccC-chhhhhcccccc
Confidence 455555555544433223344555566666555332111111001 123444443332222222110 011234566666
Q ss_pred EeccCCCccccHHHHHHHhcCCCCcEEEcCCC-CCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEe
Q 012414 280 LDAGHCFSELSTTLLHHMRDLKNLEAITMDGA-RISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTID 358 (464)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 358 (464)
|+++++.. .......+....++..+++.++ .+.......+......++.|+++++ .++..... +-...+|+++.
T Consensus 109 L~l~~n~l--~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l~ 183 (350)
T 4ay9_X 109 LLISNTGI--KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNS--AFNGTQLDELN 183 (350)
T ss_dssp EEEEEECC--SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT--SSTTEEEEEEE
T ss_pred cccccccc--ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChh--hccccchhHHh
Confidence 66665531 1111111122335556666443 2322211112212246788888874 45432111 11335788888
Q ss_pred ccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCC
Q 012414 359 LTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL 438 (464)
Q Consensus 359 l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~ 438 (464)
+.+++.++..... ....+++|+.|+++++. ++.... ..+.+|++|.+.+++.++.. ..+..+++|+.+++.+
T Consensus 184 l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N~-l~~lp~----~~~~~L~~L~~l~~~~l~~l--P~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 184 LSDNNNLEELPND-VFHGASGPVILDISRTR-IHSLPS----YGLENLKKLRARSTYNLKKL--PTLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCTTCCCCCTT-TTTTEECCSEEECTTSC-CCCCCS----SSCTTCCEEECTTCTTCCCC--CCTTTCCSCCEEECSC
T ss_pred hccCCcccCCCHH-HhccCcccchhhcCCCC-cCccCh----hhhccchHhhhccCCCcCcC--CCchhCcChhhCcCCC
Confidence 8776555432111 12357889999998865 443211 23567888888776665432 2355688888888875
Q ss_pred c
Q 012414 439 C 439 (464)
Q Consensus 439 ~ 439 (464)
+
T Consensus 256 ~ 256 (350)
T 4ay9_X 256 P 256 (350)
T ss_dssp H
T ss_pred C
Confidence 4
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.64 E-value=1e-10 Score=105.69 Aligned_cols=154 Identities=9% Similarity=-0.004 Sum_probs=77.6
Q ss_pred cCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCC
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (464)
.+++|+.|++++|.+.......+....++..|++.++..+.......+......++.|+++++. +... .......++
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i--~~~~f~~~~ 178 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEI--HNSAFNGTQ 178 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEE--CTTSSTTEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCC--Chhhccccc
Confidence 4667777777777554322222333455666666554433332221122212456777776643 2211 000112345
Q ss_pred CcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcE
Q 012414 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKT 356 (464)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 356 (464)
|+.+.+.++.. +.......+..+++|+.|++++|.++.... ..+.+|+.|.+.++..+... .. ...+++|+.
T Consensus 179 L~~l~l~~~n~-l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~l--P~-l~~l~~L~~ 250 (350)
T 4ay9_X 179 LDELNLSDNNN-LEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKL--PT-LEKLVALME 250 (350)
T ss_dssp EEEEECTTCTT-CCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCC--CC-TTTCCSCCE
T ss_pred hhHHhhccCCc-ccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcC--CC-chhCcChhh
Confidence 77777765443 333333345667778888888776543221 13456677766655444321 11 235567777
Q ss_pred EeccC
Q 012414 357 IDLTC 361 (464)
Q Consensus 357 L~l~~ 361 (464)
+++.+
T Consensus 251 l~l~~ 255 (350)
T 4ay9_X 251 ASLTY 255 (350)
T ss_dssp EECSC
T ss_pred CcCCC
Confidence 77653
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.62 E-value=2.4e-09 Score=97.01 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=99.7
Q ss_pred CCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCc
Q 012414 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381 (464)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 381 (464)
.++.|++++|.++......+...+++|+.|+++++ .+.......+ ..+++|+.|+++++ .++..... ....+++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~ 115 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSN-HLHTLDEF-LFSDLQALE 115 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECTT-TTTTCTTCC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCC-cCCcCCHH-HhCCCcCCC
Confidence 46777777776554332222126789999999985 4554322222 47789999999985 55532211 123679999
Q ss_pred EEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHh---hcCCCccEEecCCccCCChHHHHHHHhcCcc--
Q 012414 382 CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYL---SRCSELLFLKLGLCENISDKGLFYIASNCLR-- 456 (464)
Q Consensus 382 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l---~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~-- 456 (464)
.|+++++. ++...... ...+++|+.|++++ +.++......+ ..+++|+.|++++| .++......+ ..+++
T Consensus 116 ~L~L~~N~-i~~~~~~~-~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~~~ 190 (361)
T 2xot_A 116 VLLLYNNH-IVVVDRNA-FEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDL-QKLPAWV 190 (361)
T ss_dssp EEECCSSC-CCEECTTT-TTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHH-HHSCHHH
T ss_pred EEECCCCc-ccEECHHH-hCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHh-hhccHhh
Confidence 99999976 54332222 23679999999999 68876544444 46899999999999 6765444433 45565
Q ss_pred cceeeec
Q 012414 457 IQGLDLY 463 (464)
Q Consensus 457 L~~l~l~ 463 (464)
++.|+++
T Consensus 191 l~~l~l~ 197 (361)
T 2xot_A 191 KNGLYLH 197 (361)
T ss_dssp HTTEECC
T ss_pred cceEEec
Confidence 3667665
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.61 E-value=2.5e-09 Score=89.39 Aligned_cols=87 Identities=18% Similarity=0.053 Sum_probs=47.6
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCC
Q 012414 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCS 429 (464)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 429 (464)
.+++|++|+++++ .++...... ...+++|++|+++++. ++...... ...+++|+.|++++ +.++......+..++
T Consensus 79 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 79 GASGVNEILLTSN-RLENVQHKM-FKGLESLKTLMLRSNR-ITCVGNDS-FIGLSSVRLLSLYD-NQITTVAPGAFDTLH 153 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCGGG-GTTCSSCCEEECTTSC-CCCBCTTS-STTCTTCSEEECTT-SCCCCBCTTTTTTCT
T ss_pred CCCCCCEEECCCC-ccCccCHhH-hcCCcCCCEEECCCCc-CCeECHhH-cCCCccCCEEECCC-CcCCEECHHHhcCCC
Confidence 4456666666653 333211111 1245666677766654 33211111 12567777777777 566655445566677
Q ss_pred CccEEecCCccC
Q 012414 430 ELLFLKLGLCEN 441 (464)
Q Consensus 430 ~L~~L~l~~~~~ 441 (464)
+|+.|++++|+-
T Consensus 154 ~L~~L~L~~N~l 165 (220)
T 2v70_A 154 SLSTLNLLANPF 165 (220)
T ss_dssp TCCEEECCSCCE
T ss_pred CCCEEEecCcCC
Confidence 778888777743
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.60 E-value=8.9e-09 Score=82.79 Aligned_cols=130 Identities=13% Similarity=0.078 Sum_probs=68.0
Q ss_pred CCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCC
Q 012414 300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRG 379 (464)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 379 (464)
+++|+.|++++|.+... ..+....++|+.|+++++ .++.. ..+..+++|+.|+++++ .++.... .+...+++
T Consensus 18 ~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~ 89 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICRIGE-GLDQALPD 89 (176)
T ss_dssp TTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCEECS-CHHHHCTT
T ss_pred cCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC-cccccCc-chhhcCCC
Confidence 34555555555544321 122223346666666664 34332 12235567777777764 4443211 12235677
Q ss_pred CcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHH---HHhhcCCCccEEecCCc
Q 012414 380 LVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGL---EYLSRCSELLFLKLGLC 439 (464)
Q Consensus 380 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~---~~l~~~~~L~~L~l~~~ 439 (464)
|+.|+++++. ++..........+++|+.|++++ +.++.... ..+..+++|+.|++++|
T Consensus 90 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNNS-LVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCCc-CCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7777777765 43322111223677788888777 35543221 13556788888888777
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.59 E-value=8.3e-09 Score=86.85 Aligned_cols=61 Identities=20% Similarity=-0.002 Sum_probs=33.6
Q ss_pred cCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCcc
Q 012414 376 SCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCE 440 (464)
Q Consensus 376 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~ 440 (464)
.+++|+.|+++++. ++. +..-...+++|+.|++++ +.++......+..+++|+.|++.+|+
T Consensus 110 ~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 110 RLVHLKELFMCCNK-LTE--LPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEECCSSC-CCS--CCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cchhhCeEeccCCc-ccc--cCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 35566666665543 331 111123566777777776 46654443445566777777777764
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.58 E-value=4.6e-09 Score=87.79 Aligned_cols=132 Identities=20% Similarity=0.175 Sum_probs=59.5
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012414 95 TRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVN 174 (464)
Q Consensus 95 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 174 (464)
...++.|+++++. +...........+++|++|+++++. ++......+..+++|++|++++ +.++...... ...+++
T Consensus 31 ~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~ 106 (220)
T 2v70_A 31 PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS-NRLENVQHKM-FKGLES 106 (220)
T ss_dssp CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCCCCGGG-GTTCSS
T ss_pred CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCC-CccCccCHhH-hcCCcC
Confidence 4456677777652 2221111112356677777776653 4433333455566666666665 2333221111 122555
Q ss_pred ccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecC
Q 012414 175 LERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 232 (464)
|++|+++++ .+...... ....+++|+.|++++|.++......+..+++|+.|++++
T Consensus 107 L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 107 LKTLMLRSN-RITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECTTS-CCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCC-cCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 555555554 22211000 111344555555555544433333344444455555444
No 129
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.57 E-value=1e-06 Score=70.42 Aligned_cols=123 Identities=16% Similarity=0.234 Sum_probs=94.9
Q ss_pred hHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCcEEeccCCCCCChHHHHHHHh---cCCCCcEEeccCC
Q 012414 315 DSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVS---GCVNLKTIDLTCCHSITDDAISAIAD---SCRGLVCLKIESC 388 (464)
Q Consensus 315 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~ 388 (464)
+..+..+...-+.|++|+++++..+.+.+...++. .-..|+.|++++| .++|.+...++. .-..|++|+|+++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34566666667889999998755788888776654 3468999999985 789988666554 3478999999986
Q ss_pred CCCcHHHHHHHHhcC---CCccEEecCCC-C-CCChHHHHHhh----cCCCccEEecCCc
Q 012414 389 NMITEKGLYQLGSFC---LRLEEIDLTDC-N-GVNDKGLEYLS----RCSELLFLKLGLC 439 (464)
Q Consensus 389 ~~~~~~~~~~l~~~~---~~L~~L~l~~c-~-~i~~~~~~~l~----~~~~L~~L~l~~~ 439 (464)
. +++.|...+++.+ +.|++|+|+++ . .+.+.+...++ .-++|+.|++..+
T Consensus 109 ~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 F-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp B-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred c-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 5 9999999888765 57999999874 2 57777655444 5789999999877
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.56 E-value=8.7e-09 Score=86.08 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=17.2
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 232 (464)
+++|+.|++++|.+.......+..+++|+.|++++
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 44555555555544433333344455555555554
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=3.5e-09 Score=101.32 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=19.4
Q ss_pred hCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCC
Q 012414 120 ACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDK 156 (464)
Q Consensus 120 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 156 (464)
.+++|+.|+++++. + ...+..++.+++|+.|++++
T Consensus 347 ~~~~L~~L~Ls~n~-L-~~Lp~~i~~l~~L~~L~l~~ 381 (567)
T 1dce_A 347 TDEQLFRCELSVEK-S-TVLQSELESCKELQELEPEN 381 (567)
T ss_dssp TTTTSSSCCCCHHH-H-HHHHHHHHHHHHHHHHCTTC
T ss_pred cCccceeccCChhh-H-HhhHHHHHHHHHHHHhcccc
Confidence 35666666666532 2 23344556666677766654
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.53 E-value=3.2e-08 Score=79.51 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=17.5
Q ss_pred HhcCCCCcEEEcCCCCCChHHH--HHHHHhCCCCcEEecCC
Q 012414 297 MRDLKNLEAITMDGARISDSCF--QTISFNCKSLVEIGLSK 335 (464)
Q Consensus 297 ~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l~~ 335 (464)
+..+++|+.|++++|.+..... ..+...+++|+.|++++
T Consensus 109 l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 3444455555555554322111 11223556666666654
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.52 E-value=1.9e-08 Score=84.69 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=26.7
Q ss_pred CCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCC
Q 012414 96 RSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDK 156 (464)
Q Consensus 96 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 156 (464)
++++.|+++++. +..... .....+++|++|+++++. ++......+..+++|++|++++
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEP-GVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCc-cCccCH-HHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 566666666552 211101 112245566666666543 3322222344455555555555
No 134
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.52 E-value=2.2e-06 Score=68.58 Aligned_cols=127 Identities=10% Similarity=0.219 Sum_probs=92.1
Q ss_pred ccHHHHHHHhcCCCCcEEEcCCC-CCChHHHHHHHHh---CCCCcEEecCCCCCCCHHHHHHHH---hcCCCCcEEeccC
Q 012414 289 LSTTLLHHMRDLKNLEAITMDGA-RISDSCFQTISFN---CKSLVEIGLSKCLGVTNTGITQLV---SGCVNLKTIDLTC 361 (464)
Q Consensus 289 ~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~ 361 (464)
+...+...+..-+.|+.|+++++ .+.+.+...+... -..|+.|++++| .+.+.+...++ ..-..|++|+|+.
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence 33445555667789999999986 7888887777644 357999999885 58877755443 4557899999998
Q ss_pred CCCCChHHHHHHHhcC---CCCcEEeccCCC--CCcHHHHHHHH---hcCCCccEEecCCCCCCC
Q 012414 362 CHSITDDAISAIADSC---RGLVCLKIESCN--MITEKGLYQLG---SFCLRLEEIDLTDCNGVN 418 (464)
Q Consensus 362 ~~~l~~~~~~~l~~~~---~~L~~L~l~~~~--~~~~~~~~~l~---~~~~~L~~L~l~~c~~i~ 418 (464)
+.|++.+...+++.+ ..|++|+++++. .+.+.+...++ +.-+.|++|++.. +.+.
T Consensus 108 -N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~-~~~g 170 (197)
T 1pgv_A 108 -NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF-ASME 170 (197)
T ss_dssp -SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC-CCHH
T ss_pred -CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC-CCcc
Confidence 578999888887654 579999998653 46776655544 3457899999876 3443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.49 E-value=7.4e-09 Score=85.05 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=51.5
Q ss_pred HHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHh
Q 012414 296 HMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIAD 375 (464)
Q Consensus 296 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 375 (464)
.+..+++|+.|++++|.+.... .+ ..+++|+.|+++++ .+.. +......+++|+.|+++++ .++.. ..+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~-~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l--~~~~- 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASL--SGIE- 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CH-HHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCCH--HHHH-
T ss_pred HHhcCCCCCEEECCCCCCcccc--cc-ccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCcC--Cccc-
Confidence 5556667777777666544421 22 24566666666653 2321 1112223355666666654 33332 1222
Q ss_pred cCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCC
Q 012414 376 SCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD 413 (464)
Q Consensus 376 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 413 (464)
.+++|+.|+++++. ++..+.......+++|+.|++++
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECS
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecC
Confidence 34556666665544 33322212223555666666665
No 136
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.46 E-value=2.6e-08 Score=82.57 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=13.9
Q ss_pred CCcEEEccCcccChhHHHHhhcccCCceeEecC
Q 012414 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 232 (464)
+|+.|+++++.++......+..+++|++|++++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 61 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG 61 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCC
Confidence 444444444443322222233444444444444
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=1e-09 Score=100.77 Aligned_cols=232 Identities=16% Similarity=0.226 Sum_probs=119.1
Q ss_pred cCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCC
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (464)
.|++|+.+.+..+. ....-..+..+++|+.+.+... +...+-.++ ..++.|+.+.+........ .....+.+
T Consensus 160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F-~~~~~L~~i~~~~~~~~i~----~~~~~~~~ 231 (394)
T 4fs7_A 160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCF-AECILLENMEFPNSLYYLG----DFALSKTG 231 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTT-TTCTTCCBCCCCTTCCEEC----TTTTTTCC
T ss_pred ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhh-ccccccceeecCCCceEee----hhhcccCC
Confidence 56677777765441 1111123445666766666531 221111112 2256666665543211100 11122456
Q ss_pred CcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCC--CChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012414 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGAR--ISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNL 354 (464)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 354 (464)
|+.+.+... ........+..+..++.+.+..+. +.... ...++.++.+..... .+.+ .....+.+|
T Consensus 232 l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~----F~~~~~l~~~~~~~~-~i~~----~~F~~~~~L 299 (394)
T 4fs7_A 232 VKNIIIPDS---FTELGKSVFYGCTDLESISIQNNKLRIGGSL----FYNCSGLKKVIYGSV-IVPE----KTFYGCSSL 299 (394)
T ss_dssp CCEEEECTT---CCEECSSTTTTCSSCCEEEECCTTCEECSCT----TTTCTTCCEEEECSS-EECT----TTTTTCTTC
T ss_pred CceEEECCC---ceecccccccccccceeEEcCCCcceeeccc----cccccccceeccCce-eecc----ccccccccc
Confidence 666665433 111112234456677777776542 11111 125666766665432 1221 112367788
Q ss_pred cEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEE
Q 012414 355 KTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFL 434 (464)
Q Consensus 355 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L 434 (464)
+.+.+.. +++.-+-. ...+|.+|+.+++.. .++..+-.++ ..|.+|+.+.+.. .++..+-.+|.+|++|+.+
T Consensus 300 ~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 300 TEVKLLD--SVKFIGEE-AFESCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPL--SLRKIGANAFQGCINLKKV 371 (394)
T ss_dssp CEEEECT--TCCEECTT-TTTTCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEE
T ss_pred ccccccc--ccceechh-hhcCCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECc--cccEehHHHhhCCCCCCEE
Confidence 8888763 22221111 123678899888853 2433332223 3788999999876 3665556677889999999
Q ss_pred ecCCccCCChHHHHHHHhcCccccee
Q 012414 435 KLGLCENISDKGLFYIASNCLRIQGL 460 (464)
Q Consensus 435 ~l~~~~~i~~~~~~~~~~~~~~L~~l 460 (464)
++..+ +... ..-..+|++|+.+
T Consensus 372 ~lp~~--~~~~--~~~F~~c~~L~~I 393 (394)
T 4fs7_A 372 ELPKR--LEQY--RYDFEDTTKFKWI 393 (394)
T ss_dssp EEEGG--GGGG--GGGBCTTCEEEEE
T ss_pred EECCC--CEEh--hheecCCCCCcEE
Confidence 98654 2221 1224678888775
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.45 E-value=8.2e-08 Score=91.46 Aligned_cols=192 Identities=16% Similarity=0.059 Sum_probs=100.0
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGL 277 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (464)
+.+++.|+++++.++.. ...+ +++|+.|+++++. +.... ..+++|+.|+++++. +.. +.. + ..+|
T Consensus 58 ~~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~-l~~ip-----~~l~~L~~L~Ls~N~-l~~--ip~-l--~~~L 122 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNA-LISLP-----ELPASLEYLDACDNR-LST--LPE-L--PASL 122 (571)
T ss_dssp HTTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSC-CSCCC-----CCCTTCCEEECCSSC-CSC--CCC-C--CTTC
T ss_pred cCCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCC-Ccccc-----cccCCCCEEEccCCC-CCC--cch-h--hcCC
Confidence 45899999998866541 1112 4778888888753 43211 336788888888753 322 111 1 1278
Q ss_pred cEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEE
Q 012414 278 LQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTI 357 (464)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 357 (464)
++|+++++.. .. +.. .+++|+.|++++|.++... . .+++|+.|+++++. ++. +.. + . ++|+.|
T Consensus 123 ~~L~Ls~N~l--~~--lp~--~l~~L~~L~Ls~N~l~~lp--~---~l~~L~~L~Ls~N~-L~~--lp~-l-~-~~L~~L 185 (571)
T 3cvr_A 123 KHLDVDNNQL--TM--LPE--LPALLEYINADNNQLTMLP--E---LPTSLEVLSVRNNQ-LTF--LPE-L-P-ESLEAL 185 (571)
T ss_dssp CEEECCSSCC--SC--CCC--CCTTCCEEECCSSCCSCCC--C---CCTTCCEEECCSSC-CSC--CCC-C-C-TTCCEE
T ss_pred CEEECCCCcC--CC--CCC--cCccccEEeCCCCccCcCC--C---cCCCcCEEECCCCC-CCC--cch-h-h-CCCCEE
Confidence 8888877653 22 111 4667777777777654321 1 45677777777643 332 111 1 1 667777
Q ss_pred eccCCCCCChHHH--HHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhh
Q 012414 358 DLTCCHSITDDAI--SAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLS 426 (464)
Q Consensus 358 ~l~~~~~l~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~ 426 (464)
+++++ .++.... ..+....+.|+.|++++|. ++.. ..-...+++|+.|++++ +.++......+.
T Consensus 186 ~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~l--p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~ 251 (571)
T 3cvr_A 186 DVSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITHI--PENILSLDPTCTIILED-NPLSSRIRESLS 251 (571)
T ss_dssp ECCSS-CCSSCCCCC--------CCEEEECCSSC-CCCC--CGGGGGSCTTEEEECCS-SSCCHHHHHHHH
T ss_pred ECcCC-CCCchhhHHHhhhcccccceEEecCCCc-ceec--CHHHhcCCCCCEEEeeC-CcCCCcCHHHHH
Confidence 77764 3331100 0011111222666666643 3321 11111356666666666 456555444443
No 139
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.41 E-value=1.9e-07 Score=88.95 Aligned_cols=133 Identities=19% Similarity=0.148 Sum_probs=72.9
Q ss_pred CCCceEEecccCCCCCcchhhhhhcccccccCCCccEEEecCCCCCChHHHHHHHhhCCCCcEEecCCCCCCChHHHHHh
Q 012414 64 YPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAAL 143 (464)
Q Consensus 64 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 143 (464)
..+++.|+++++. +.. + +....++|+.|+++++. +.. ++ ..+++|++|+++++. ++... .+
T Consensus 58 ~~~L~~L~Ls~n~-L~~-----l----p~~l~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~N~-l~~ip--~l 118 (571)
T 3cvr_A 58 INQFSELQLNRLN-LSS-----L----PDNLPPQITVLEITQNA-LIS--LP---ELPASLEYLDACDNR-LSTLP--EL 118 (571)
T ss_dssp HTTCSEEECCSSC-CSC-----C----CSCCCTTCSEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSCCC--CC
T ss_pred cCCccEEEeCCCC-CCc-----c----CHhHcCCCCEEECcCCC-Ccc--cc---cccCCCCEEEccCCC-CCCcc--hh
Confidence 3578899988743 433 2 12234778888888773 321 11 346788888888764 33211 12
Q ss_pred hcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhccc
Q 012414 144 SFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLA 223 (464)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 223 (464)
. .+|++|+++++ .++. +.. .+++|+.|+++++ .++. +. ..+++|+.|++++|.++.... +. +
T Consensus 119 ~--~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~--lp---~~l~~L~~L~Ls~N~L~~lp~--l~--~ 180 (571)
T 3cvr_A 119 P--ASLKHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTM--LP---ELPTSLEVLSVRNNQLTFLPE--LP--E 180 (571)
T ss_dssp C--TTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSCCSCCCC--CC--T
T ss_pred h--cCCCEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCc--CC---CcCCCcCEEECCCCCCCCcch--hh--C
Confidence 2 27777777763 3333 111 3667777777665 3331 11 134566777776665443111 22 5
Q ss_pred CCceeEecCC
Q 012414 224 KLESLVMVGC 233 (464)
Q Consensus 224 ~L~~L~l~~~ 233 (464)
+|+.|+++++
T Consensus 181 ~L~~L~Ls~N 190 (571)
T 3cvr_A 181 SLEALDVSTN 190 (571)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECcCC
Confidence 6666666653
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.41 E-value=5.7e-08 Score=79.72 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=26.6
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCCh-hHHHHHHhcCCCCceeecccc
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDD-TGLRFLESGCPLLKTIFVSRC 259 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~ 259 (464)
+++|+.|++++|.++.. ..+..+++|+.|+++++. +.. ..+..+.. +++|++|+++++
T Consensus 92 ~~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~-l~~L~~L~l~~N 150 (198)
T 1ds9_A 92 ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNK-ITNWGEIDKLAA-LDKLEDLLLAGN 150 (198)
T ss_dssp HHHCSEEEEEEEECCCH--HHHHHHHHSSEEEESEEE-CCCHHHHHHHTT-TTTCSEEEECSC
T ss_pred CCcCCEEECcCCcCCcC--CccccCCCCCEEECCCCc-CCchhHHHHHhc-CCCCCEEEecCC
Confidence 34555555555554432 234455555555555532 222 11222222 455555555543
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.23 E-value=5.4e-09 Score=95.98 Aligned_cols=232 Identities=18% Similarity=0.233 Sum_probs=130.8
Q ss_pred cCCCccEEeccCCC-ccCHHHHHHHHhcCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCC
Q 012414 171 RCVNLERLSLKWCM-EISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCP 249 (464)
Q Consensus 171 ~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 249 (464)
.|++|+.+.+.... .+.. ..+..|++|+.+.+..+ +....-..+..+..|+.+.+.... ...+ .....+.
T Consensus 160 ~c~~L~~i~l~~~~~~I~~----~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~--~~~~~~~ 230 (394)
T 4fs7_A 160 TCESLEYVSLPDSMETLHN----GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLG--DFALSKT 230 (394)
T ss_dssp TCTTCCEEECCTTCCEECT----TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEEC--TTTTTTC
T ss_pred ccCCCcEEecCCccceecc----ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEee--hhhcccC
Confidence 48889999886531 1221 12346888998888765 221122335567778877766421 1110 1112256
Q ss_pred CCceeeccccc-ccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCC
Q 012414 250 LLKTIFVSRCK-FVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSL 328 (464)
Q Consensus 250 ~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 328 (464)
+|+.+.+.... .+.. .....+..++.+.+.... .......+..+..++.+......+.+.. ...|.+|
T Consensus 231 ~l~~i~ip~~~~~i~~----~~f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~~i~~~~----F~~~~~L 299 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGK----SVFYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSVIVPEKT----FYGCSSL 299 (394)
T ss_dssp CCCEEEECTTCCEECS----STTTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSSEECTTT----TTTCTTC
T ss_pred CCceEEECCCceeccc----ccccccccceeEEcCCCc---ceeeccccccccccceeccCceeecccc----ccccccc
Confidence 78888775421 1111 123356778888776542 1122233456777888777665444432 2367889
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccE
Q 012414 329 VEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEE 408 (464)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 408 (464)
+.+.+... +...+-..+ ..|.+|+.+++.. +++.-+-.. ..+|.+|+.+.+... ++..+-.++ ..|++|+.
T Consensus 300 ~~i~l~~~--i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~~--l~~I~~~aF-~~C~~L~~ 370 (394)
T 4fs7_A 300 TEVKLLDS--VKFIGEEAF-ESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPLS--LRKIGANAF-QGCINLKK 370 (394)
T ss_dssp CEEEECTT--CCEECTTTT-TTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCTT--CCEECTTTB-TTCTTCCE
T ss_pred cccccccc--cceechhhh-cCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECcc--ccEehHHHh-hCCCCCCE
Confidence 99988642 333222223 4688999999863 233211112 236889999999642 443332233 47899999
Q ss_pred EecCCCCCCChHHHHHhhcCCCccEE
Q 012414 409 IDLTDCNGVNDKGLEYLSRCSELLFL 434 (464)
Q Consensus 409 L~l~~c~~i~~~~~~~l~~~~~L~~L 434 (464)
+.+.. .++... .++.+|++|+.+
T Consensus 371 i~lp~--~~~~~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 371 VELPK--RLEQYR-YDFEDTTKFKWI 393 (394)
T ss_dssp EEEEG--GGGGGG-GGBCTTCEEEEE
T ss_pred EEECC--CCEEhh-heecCCCCCcEE
Confidence 99976 333322 346678888875
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.21 E-value=9.3e-08 Score=77.92 Aligned_cols=110 Identities=15% Similarity=0.058 Sum_probs=57.1
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCc
Q 012414 327 SLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406 (464)
Q Consensus 327 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 406 (464)
+++.|+++++ .+........+..+++|++|+++++ .++......+ ..+++|+.|+++++. ++...... ...+++|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQLGENK-IKEISNKM-FLGLHQL 104 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSCC-CCEECSSS-STTCTTC
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEECCCCc-CCccCHHH-hcCCCCC
Confidence 5555555553 2322111111234566666666653 3332211111 245667777776654 33221111 1246777
Q ss_pred cEEecCCCCCCChHHHHHhhcCCCccEEecCCccCC
Q 012414 407 EEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENI 442 (464)
Q Consensus 407 ~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i 442 (464)
+.|++++ +.++......+..+++|+.|++++|+-.
T Consensus 105 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 105 KTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8888877 5776554455666778888888777433
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.13 E-value=5.3e-07 Score=73.37 Aligned_cols=91 Identities=16% Similarity=0.062 Sum_probs=49.1
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCC
Q 012414 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCS 429 (464)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 429 (464)
.+++|+.|+++++ .++......+ ..+++|+.|+++++. ++...... ...+++|+.|++++ +.++......+..++
T Consensus 52 ~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~~-f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 52 NYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYNR-LRCIPPRT-FDGLKSLRLLSLHG-NDISVVPEGAFNDLS 126 (193)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTT-TTTCTTCCEEECCS-SCCCBCCTTTTTTCT
T ss_pred cccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCCc-cCEeCHHH-hCCCCCCCEEECCC-CCCCeeChhhhhcCc
Confidence 4555666666553 3332111111 245666667666654 33222111 22567777777777 566654444556677
Q ss_pred CccEEecCCccCCChH
Q 012414 430 ELLFLKLGLCENISDK 445 (464)
Q Consensus 430 ~L~~L~l~~~~~i~~~ 445 (464)
+|+.|++.+|+-..+.
T Consensus 127 ~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 127 ALSHLAIGANPLYCDC 142 (193)
T ss_dssp TCCEEECCSSCEECSG
T ss_pred cccEEEeCCCCeecCC
Confidence 7888888777543333
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.09 E-value=5.2e-07 Score=73.41 Aligned_cols=105 Identities=13% Similarity=-0.019 Sum_probs=74.9
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCc
Q 012414 352 VNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSEL 431 (464)
Q Consensus 352 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L 431 (464)
++|++|+++++ .++... .....+++|+.|+++++. ++...... ...+++|+.|++++ +.++......+..+++|
T Consensus 31 ~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i~~~~-f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR-ISTLSNQS-FSNMTQLLTLILSY-NRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTC
T ss_pred CCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc-CCEeCHhH-ccCCCCCCEEECCC-CccCEeCHHHhCCCCCC
Confidence 47888888874 444221 223468999999999876 55332222 23679999999999 68887766678889999
Q ss_pred cEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 432 LFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 432 ~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+.|++++| .++..... .+..+++|+.|++++
T Consensus 105 ~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 105 RLLSLHGN-DISVVPEG-AFNDLSALSHLAIGA 135 (193)
T ss_dssp CEEECCSS-CCCBCCTT-TTTTCTTCCEEECCS
T ss_pred CEEECCCC-CCCeeChh-hhhcCccccEEEeCC
Confidence 99999999 66543222 235789999998864
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.09 E-value=1.7e-08 Score=92.22 Aligned_cols=35 Identities=6% Similarity=0.056 Sum_probs=16.4
Q ss_pred cCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCc
Q 012414 402 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC 439 (464)
Q Consensus 402 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~ 439 (464)
.|++|+.+.+.. .++..+..+|..| +|+.+.+.++
T Consensus 321 ~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 321 GNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 445555555533 2333333344445 5555555544
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.05 E-value=2.2e-07 Score=75.62 Aligned_cols=107 Identities=14% Similarity=0.031 Sum_probs=76.6
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCc
Q 012414 352 VNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSEL 431 (464)
Q Consensus 352 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L 431 (464)
++|++|+++++ .++..........+++|+.|+++++. ++...... ...+++|+.|++++ +.++......+..+++|
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNA-FEGASHIQELQLGE-NKIKEISNKMFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCS-CCCCEECSSSSTTCTTC
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhH-cCCcccCCEEECCC-CcCCccCHHHhcCCCCC
Confidence 48999999985 55432221123478999999999975 54322222 23678999999999 68887766667789999
Q ss_pred cEEecCCccCCChHHHHHHHhcCcccceeeecC
Q 012414 432 LFLKLGLCENISDKGLFYIASNCLRIQGLDLYK 464 (464)
Q Consensus 432 ~~L~l~~~~~i~~~~~~~~~~~~~~L~~l~l~~ 464 (464)
+.|++++| +++...... +..+++|+.|++++
T Consensus 105 ~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 105 KTLNLYDN-QISCVMPGS-FEHLNSLTSLNLAS 135 (192)
T ss_dssp CEEECCSS-CCCEECTTS-STTCTTCCEEECTT
T ss_pred CEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCC
Confidence 99999999 666432222 35678999999864
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.03 E-value=4.5e-08 Score=89.85 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=37.4
Q ss_pred cCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCChHHHHHHHhcCc
Q 012414 376 SCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCL 455 (464)
Q Consensus 376 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~ 455 (464)
+|.+|+.+.+.. .++..+-.++ ..|.+|+.+.+.. .++..+-.+|.+|++|+.+++.++. ..... ...|.
T Consensus 309 ~c~~L~~i~lp~--~v~~I~~~aF-~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~----~~~~~-~~~~~ 378 (394)
T 4gt6_A 309 GCISLKSIDIPE--GITQILDDAF-AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR----SQWNA-ISTDS 378 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH----HHHHT-CBCCC
T ss_pred CCCCcCEEEeCC--cccEehHhHh-hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce----eehhh-hhccC
Confidence 466666666643 1222222222 2567777777754 3444444556667777777776551 11112 24556
Q ss_pred ccceeee
Q 012414 456 RIQGLDL 462 (464)
Q Consensus 456 ~L~~l~l 462 (464)
+|+.+.+
T Consensus 379 ~L~~i~i 385 (394)
T 4gt6_A 379 GLQNLPV 385 (394)
T ss_dssp CC-----
T ss_pred CCCEEEe
Confidence 6666554
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.02 E-value=5.2e-08 Score=89.02 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=41.9
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCC
Q 012414 350 GCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCS 429 (464)
Q Consensus 350 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 429 (464)
.|++|+.+.+.. +++.-+-.. ..+|++|+.+.+... ++..+-..+ ..| +|+.+.+.+ +.+....-..+..++
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~~a-F~~c~~L~~l~lp~~--l~~I~~~aF-~~~-~L~~l~l~~-n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQGL-LGGNRKVTQLTIPAN--VTQINFSAF-NNT-GIKEVKVEG-TTPPQVFEKVWYGFP 369 (401)
T ss_dssp TCTTCCEECCCT--TCCEECTTT-TTTCCSCCEEEECTT--CCEECTTSS-SSS-CCCEEEECC-SSCCBCCCSSCCCSC
T ss_pred CCccCCeEEeCC--ceEEEhhhh-hcCCCCccEEEECcc--ccEEcHHhC-CCC-CCCEEEEcC-CCCcccccccccCCC
Confidence 556666666653 222211111 225677777777432 333222222 256 788888877 444333323344453
Q ss_pred -CccEEecCCc
Q 012414 430 -ELLFLKLGLC 439 (464)
Q Consensus 430 -~L~~L~l~~~ 439 (464)
+++.|.+..+
T Consensus 370 ~~l~~l~vp~~ 380 (401)
T 4fdw_A 370 DDITVIRVPAE 380 (401)
T ss_dssp TTCCEEEECGG
T ss_pred CCccEEEeCHH
Confidence 6777777654
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.00 E-value=6.2e-07 Score=71.98 Aligned_cols=131 Identities=12% Similarity=0.012 Sum_probs=85.7
Q ss_pred CcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcE
Q 012414 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVC 382 (464)
Q Consensus 303 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~ 382 (464)
.+.++++++.+..... ...++|+.|+++++ .+..... .....+++|++|+++++ .++..... ....+++|+.
T Consensus 9 ~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT----GIPSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSQN-QIQSLPDG-VFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCT----TCCTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCE
T ss_pred CCEEEecCCCCccCCC----CCCCCCcEEEeCCC-cccEeCH-HHhcCcccccEEECCCC-cceEeChh-HccCCCccCE
Confidence 4566666665433221 13478999999985 3543211 12246789999999985 55532111 1236889999
Q ss_pred EeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCCh
Q 012414 383 LKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 444 (464)
Q Consensus 383 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~ 444 (464)
|+++++. ++.... .....+++|+.|++++ +.++......+..+++|+.|++++|+-..+
T Consensus 81 L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 81 LYLHENK-LQSLPN-GVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp EECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECCCCC-ccccCH-HHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 9999875 543221 1223678999999999 588765545566799999999999954443
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.97 E-value=1.2e-06 Score=70.19 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=15.1
Q ss_pred CCCCcEEEccCcccChhHHHHhhcccCCceeEecC
Q 012414 198 CLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVG 232 (464)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 232 (464)
+++|+.|++++|.+.......+..+++|++|++++
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 44555555555544322222233344445554444
No 151
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.94 E-value=1.6e-06 Score=72.80 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=37.9
Q ss_pred CccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhccccc
Q 012414 5 SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRT 47 (464)
Q Consensus 5 ~~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~~~ 47 (464)
..|++||+||+.+||+||+ ++|+.+++.|||+|+.++.+...
T Consensus 3 ~~l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D~~L 44 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRDPIL 44 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTCHHH
T ss_pred chhHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhccchH
Confidence 3688999999999999999 99999999999999999876533
No 152
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.87 E-value=5.6e-06 Score=70.45 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=36.8
Q ss_pred CccCCCcHHHHHHHHHHhCCccchh-hHHhhhhHHHhhhccc
Q 012414 5 SALDVLTEDLLVRVREKIGDELDSK-TWRLVCKEFSRVDSVT 45 (464)
Q Consensus 5 ~~~~~LP~eil~~I~~~L~~~~d~~-~~~~vc~~w~~~~~~~ 45 (464)
..+..||+|++..||.+|+ .++++ ++++|||+|+.++...
T Consensus 49 ~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred cChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 5789999999999999999 99999 9999999999987654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=3.9e-05 Score=64.99 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=55.5
Q ss_pred HHhcCCCCcEEeccCCCCCcH-HHHHHHHhcCCCccEEecCCCCCCChH-HHHHhhcCCCccEEecCCccCCCh------
Q 012414 373 IADSCRGLVCLKIESCNMITE-KGLYQLGSFCLRLEEIDLTDCNGVNDK-GLEYLSRCSELLFLKLGLCENISD------ 444 (464)
Q Consensus 373 l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~c~~i~~~-~~~~l~~~~~L~~L~l~~~~~i~~------ 444 (464)
+...+|+|+.|+++++. ++. .++......+++|+.|+|++ +.+++. .+..+..+ +|+.|++.+|+ +..
T Consensus 165 ~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~~~~~ 240 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNS-LCDTFRDQS 240 (267)
T ss_dssp HHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTST-TGGGCSSHH
T ss_pred HHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCc-CccccCcch
Confidence 33457788888887765 433 23334445788888888888 677754 23333334 88999998884 442
Q ss_pred HHHHHHHhcCcccceee
Q 012414 445 KGLFYIASNCLRIQGLD 461 (464)
Q Consensus 445 ~~~~~~~~~~~~L~~l~ 461 (464)
.....++..+|+|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 23345677889988886
No 154
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.69 E-value=2.4e-06 Score=84.52 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=46.9
Q ss_pred HHhcCCCCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHh
Q 012414 296 HMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIAD 375 (464)
Q Consensus 296 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 375 (464)
.+..++.|+.|+|++|.+....- .+. .+++|+.|+++++ .++. +...+..+++|+.|+|+++ .++. +..-..
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~-~~~-~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~ 290 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISA-NIF-KYDFLTRLYLNGN-SLTE--LPAEIKNLSNLRVLDLSHN-RLTS--LPAELG 290 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCG-GGG-GCCSCSCCBCTTS-CCSC--CCGGGGGGTTCCEEECTTS-CCSS--CCSSGG
T ss_pred hhccCCCCcEEECCCCCCCCCCh-hhc-CCCCCCEEEeeCC-cCcc--cChhhhCCCCCCEEeCcCC-cCCc--cChhhc
Confidence 34455666666666665432110 111 4556666666653 2331 1111234555666666553 3331 111112
Q ss_pred cCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCCh
Q 012414 376 SCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVND 419 (464)
Q Consensus 376 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 419 (464)
.+++|+.|++++|. ++.. ..-...+++|+.|+|++ +.++.
T Consensus 291 ~l~~L~~L~L~~N~-l~~l--p~~~~~l~~L~~L~L~~-N~l~~ 330 (727)
T 4b8c_D 291 SCFQLKYFYFFDNM-VTTL--PWEFGNLCNLQFLGVEG-NPLEK 330 (727)
T ss_dssp GGTTCSEEECCSSC-CCCC--CSSTTSCTTCCCEECTT-SCCCS
T ss_pred CCCCCCEEECCCCC-CCcc--ChhhhcCCCccEEeCCC-CccCC
Confidence 34555555555543 2211 00122345555555555 34443
No 155
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.64 E-value=1.1e-05 Score=79.79 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=52.3
Q ss_pred cCCCCcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCC
Q 012414 197 KCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSG 276 (464)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (464)
.+++|+.|++++|.+.. ....+..+++|++|+++++. +... ...+ ..+++|+.|+|+++. +. .+...+..+++
T Consensus 222 ~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~l-p~~~-~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~ 294 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNS-LTEL-PAEI-KNLSNLRVLDLSHNR-LT--SLPAELGSCFQ 294 (727)
T ss_dssp CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSC-CSCC-CGGG-GGGTTCCEEECTTSC-CS--SCCSSGGGGTT
T ss_pred cCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCc-Cccc-Chhh-hCCCCCCEEeCcCCc-CC--ccChhhcCCCC
Confidence 44555555555554431 11223345566666665532 2210 0111 225566666665543 22 11222334566
Q ss_pred CcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCCh
Q 012414 277 LLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISD 315 (464)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 315 (464)
|++|+++++. +. .....+..+++|+.|+|++|.+..
T Consensus 295 L~~L~L~~N~--l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 295 LKYFYFFDNM--VT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CSEEECCSSC--CC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCEEECCCCC--CC-ccChhhhcCCCccEEeCCCCccCC
Confidence 6666666654 22 222235566677777777776553
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.60 E-value=8.4e-07 Score=81.33 Aligned_cols=292 Identities=16% Similarity=0.231 Sum_probs=150.7
Q ss_pred HhhcC-CCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCC--CccCHHHHHHHHhcCCCCcEEEccCcccChhHHHH
Q 012414 142 ALSFA-SGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWC--MEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCS 218 (464)
Q Consensus 142 ~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 218 (464)
++..+ ..|+++.+.. .++.-+-.++. +|.+|+.+.+... ..++..+-. .+..|.+|+.+.+..+ +....-..
T Consensus 58 aF~~~~~~L~sI~iP~--svt~Ig~~AF~-~C~~L~~i~~~~n~p~~l~~Ig~~-aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD--TVTEIGSNAFY-NCTSLKRVTIQDNKPSCVKKIGRQ-AFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTCCSCCCEEEECT--TCCEECTTTTT-TCTTCCEEEEGGGCCCCCCEECTT-TTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred hccCCCCcCEEEEECC--CeeEEhHHHhh-CCccCceEeecCCCCCeeeEechh-hchhcccceeeccCCc-cceehhhh
Confidence 44555 3589998864 23332222232 3889999887542 112211111 1235777777766543 22222233
Q ss_pred hhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHh
Q 012414 219 IATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMR 298 (464)
Q Consensus 219 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 298 (464)
+..+.+|+.+.+... +...+-..+ ..+.+|+.+.+... +...+-.++ ....|+.+.+... ........+.
T Consensus 133 F~~c~~L~~i~lp~~--~~~I~~~~F-~~c~~L~~i~~~~~--~~~I~~~aF--~~~~l~~i~ip~~---~~~i~~~af~ 202 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG--VTSVADGMF-SYCYSLHTVTLPDS--VTAIEERAF--TGTALTQIHIPAK---VTRIGTNAFS 202 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEECCTT--CCEECTTTT--TTCCCSEEEECTT---CCEECTTTTT
T ss_pred hhhhcccccccccce--eeeecccce-ecccccccccccce--eeEeccccc--cccceeEEEECCc---ccccccchhh
Confidence 556778888887642 222111122 23677887777542 211111111 2356777776543 2222233345
Q ss_pred cCCCCcEEEcCCCCCChHH--H-H-------HH--HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCC
Q 012414 299 DLKNLEAITMDGARISDSC--F-Q-------TI--SFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSIT 366 (464)
Q Consensus 299 ~~~~L~~L~l~~~~~~~~~--~-~-------~l--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 366 (464)
.+..+.............. + . .+ ......+..+.+.. .+...+-.. ...|..|+.+.+... +.
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~a-F~~c~~L~~i~lp~~--~~ 277 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHA-FDSCAYLASVKMPDS--VV 277 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTT-TTTCSSCCEEECCTT--CC
T ss_pred hccccceecccccccccccceeecccccccccccccccccccceEEcCC--cceEcccce-eeecccccEEecccc--cc
Confidence 5666666655443211000 0 0 00 00112233343321 111111112 236788999888642 22
Q ss_pred hHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCccEEecCCc-cCCChH
Q 012414 367 DDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC-ENISDK 445 (464)
Q Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~-~~i~~~ 445 (464)
..+-. ....|+.|+.+.+.. .++..+-.. ...|.+|+.+.+.. .++..+-.+|.+|.+|+.+.+..+ ..|...
T Consensus 278 ~I~~~-aF~~c~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~ 351 (394)
T 4gt6_A 278 SIGTG-AFMNCPALQDIEFSS--RITELPESV-FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSSVTKIPES 351 (394)
T ss_dssp EECTT-TTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTTCCBCCGG
T ss_pred eecCc-ccccccccccccCCC--cccccCcee-ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcccCEEhHh
Confidence 11111 123688999999954 233332222 34789999999976 465555567888999999999654 234333
Q ss_pred HHHHHHhcCcccceeeec
Q 012414 446 GLFYIASNCLRIQGLDLY 463 (464)
Q Consensus 446 ~~~~~~~~~~~L~~l~l~ 463 (464)
+ + .+|++|+.+++.
T Consensus 352 a---F-~~C~~L~~i~~~ 365 (394)
T 4gt6_A 352 A---F-SNCTALNNIEYS 365 (394)
T ss_dssp G---G-TTCTTCCEEEES
T ss_pred H---h-hCCCCCCEEEEC
Confidence 3 3 799999999875
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.49 E-value=1.7e-05 Score=62.87 Aligned_cols=86 Identities=15% Similarity=0.039 Sum_probs=62.5
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCC
Q 012414 351 CVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSE 430 (464)
Q Consensus 351 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~ 430 (464)
.++|+.|+++++ .++......+ ..+++|+.|+++++. ++...- .....+++|+.|++++ +.++......+..+++
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 103 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGVF-DRLTQLTRLDLDNNQ-LTVLPA-GVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKS 103 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCCCcEEEcCCC-cCCccChhhh-cCcccCCEEECCCCC-cCccCh-hhccCCCCCCEEECCC-CccCEeCHHHhcCCCC
Confidence 378999999985 5554322222 268899999999875 553221 1224689999999999 6887665556778999
Q ss_pred ccEEecCCccC
Q 012414 431 LLFLKLGLCEN 441 (464)
Q Consensus 431 L~~L~l~~~~~ 441 (464)
|+.|++++|+-
T Consensus 104 L~~L~L~~N~~ 114 (170)
T 3g39_A 104 LTHIWLLNNPW 114 (170)
T ss_dssp CCEEECCSSCB
T ss_pred CCEEEeCCCCC
Confidence 99999999953
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.45 E-value=2e-05 Score=62.70 Aligned_cols=85 Identities=18% Similarity=0.049 Sum_probs=61.6
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhcCCCc
Q 012414 352 VNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSEL 431 (464)
Q Consensus 352 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L 431 (464)
++|+.|+++++ .++...... ...+++|+.|+++++. ++.... .....+++|+.|++++ +.++......+..+++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGV-FDHLVNLQQLYFNSNK-LTAIPT-GVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCC-CccccCHHH-hcCCcCCCEEECCCCC-CCccCh-hHhCCcchhhEEECCC-CccceeCHHHhccccCC
Confidence 68999999985 554322222 2368899999999975 553221 1224679999999999 68876554557789999
Q ss_pred cEEecCCccC
Q 012414 432 LFLKLGLCEN 441 (464)
Q Consensus 432 ~~L~l~~~~~ 441 (464)
+.|++++|+-
T Consensus 108 ~~L~L~~N~~ 117 (174)
T 2r9u_A 108 THIYLYNNPW 117 (174)
T ss_dssp SEEECCSSCB
T ss_pred CEEEeCCCCc
Confidence 9999999953
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.42 E-value=2.5e-05 Score=61.90 Aligned_cols=106 Identities=13% Similarity=0.017 Sum_probs=67.5
Q ss_pred CCcEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCc
Q 012414 302 NLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381 (464)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 381 (464)
..+.++++++.+..... ...++|+.|+++++ .++..... .+..+++|++|+++++ .++.... .....+++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~----~~~~~l~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT----GIPTTTQVLYLYDN-QITKLEPG-VFDRLTQLTRLDLDNN-QLTVLPA-GVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCS----CCCTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCC
T ss_pred CCCEEEeCCCCcCccCc----cCCCCCcEEEcCCC-cCCccChh-hhcCcccCCEEECCCC-CcCccCh-hhccCCCCCC
Confidence 34667777765443211 12378999999985 45442222 2246789999999985 5553221 1223689999
Q ss_pred EEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCC
Q 012414 382 CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (464)
Q Consensus 382 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (464)
.|+++++. ++.... .....+++|+.|++++ +.++
T Consensus 82 ~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~-N~~~ 115 (170)
T 3g39_A 82 QLSLNDNQ-LKSIPR-GAFDNLKSLTHIWLLN-NPWD 115 (170)
T ss_dssp EEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCBC
T ss_pred EEECCCCc-cCEeCH-HHhcCCCCCCEEEeCC-CCCC
Confidence 99999875 543221 1234689999999999 6664
No 160
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.39 E-value=3.4e-05 Score=72.34 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=37.3
Q ss_pred CCccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhcc
Q 012414 4 SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSV 44 (464)
Q Consensus 4 ~~~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~ 44 (464)
.|.+..||+|++.+||+||+ .+++.++++|||+|++++..
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 47889999999999999999 99999999999999998765
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.38 E-value=3e-05 Score=61.70 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=65.5
Q ss_pred cEEEcCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEE
Q 012414 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCL 383 (464)
Q Consensus 304 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 383 (464)
+.++++++.+..... ...++|+.|+++++ .+..... ..+..+++|+.|+++++ .++.... .....+++|+.|
T Consensus 15 ~~l~~~~n~l~~iP~----~~~~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA----GIPTDKQRLWLNNN-QITKLEP-GVFDHLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSCCS----CCCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEE
T ss_pred cEEEeCCCCCCccCC----CcCCCCcEEEeCCC-CccccCH-HHhcCCcCCCEEECCCC-CCCccCh-hHhCCcchhhEE
Confidence 556666665432211 12378999999985 4543221 22346889999999985 5554211 122367999999
Q ss_pred eccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCC
Q 012414 384 KIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVN 418 (464)
Q Consensus 384 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~ 418 (464)
+++++. ++.... .....+++|+.|++++ +.+.
T Consensus 87 ~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~-N~~~ 118 (174)
T 2r9u_A 87 DLNDNH-LKSIPR-GAFDNLKSLTHIYLYN-NPWD 118 (174)
T ss_dssp ECCSSC-CCCCCT-TTTTTCTTCSEEECCS-SCBC
T ss_pred ECCCCc-cceeCH-HHhccccCCCEEEeCC-CCcc
Confidence 999865 543221 1234689999999999 5664
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.33 E-value=0.00059 Score=57.80 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=39.4
Q ss_pred hcCCCCceeecccccccChhHHHHHHhcCCCCcEEeccCCCccccHHHHHHHhcCCCCcEEEcCCCCCCh------HHHH
Q 012414 246 SGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISD------SCFQ 319 (464)
Q Consensus 246 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~ 319 (464)
..+|+|+.|+++++.-..-.++......+++|+.|+++++.. .....+..+..+ +|+.|.+++|++.. ....
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 345666666666543222222333334456666666665542 211112222223 66666666665442 1122
Q ss_pred HHHHhCCCCcEEe
Q 012414 320 TISFNCKSLVEIG 332 (464)
Q Consensus 320 ~l~~~~~~L~~L~ 332 (464)
.+...+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3334555555554
No 163
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.19 E-value=0.00013 Score=68.05 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCCccCCCcHHHHHHHHHHhCCccchhhHHhhhhHHHhhhcc
Q 012414 3 GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSV 44 (464)
Q Consensus 3 ~~~~~~~LP~eil~~I~~~L~~~~d~~~~~~vc~~w~~~~~~ 44 (464)
..|.+..||+|++.+||+||+ .+|+.+++.|||+|+.++..
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred cCChhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcCc
Confidence 347899999999999999999 99999999999999998754
No 164
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.16 E-value=6e-05 Score=70.06 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=38.1
Q ss_pred CCCccCCCcHH----HHHHHHHHhCCccchhhHHhhhhHHHhhhccc
Q 012414 3 GSSALDVLTED----LLVRVREKIGDELDSKTWRLVCKEFSRVDSVT 45 (464)
Q Consensus 3 ~~~~~~~LP~e----il~~I~~~L~~~~d~~~~~~vc~~w~~~~~~~ 45 (464)
..|++..||+| |+.+||+||+ .+++.++++|||+|+.++...
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~ 52 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTSDG 52 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHHHT
T ss_pred hcChHHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 35788999999 9999999999 999999999999999987654
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.72 E-value=5.2e-06 Score=75.69 Aligned_cols=105 Identities=20% Similarity=0.314 Sum_probs=47.9
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcC
Q 012414 324 NCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFC 403 (464)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 403 (464)
.|.+|+.+.+... +...+-..+ ..+.+|+.+.+.. .+...+-. ....|++|+.+.+.++. ++..+-.. ...|
T Consensus 238 ~~~~L~~i~lp~~--v~~I~~~aF-~~~~~l~~i~l~~--~i~~i~~~-aF~~c~~L~~i~l~~~~-i~~I~~~a-F~~c 309 (379)
T 4h09_A 238 GMKALDEIAIPKN--VTSIGSFLL-QNCTALKTLNFYA--KVKTVPYL-LCSGCSNLTKVVMDNSA-IETLEPRV-FMDC 309 (379)
T ss_dssp TCSSCCEEEECTT--CCEECTTTT-TTCTTCCEEEECC--CCSEECTT-TTTTCTTCCEEEECCTT-CCEECTTT-TTTC
T ss_pred CCccceEEEcCCC--ccEeCcccc-ceeehhccccccc--cceecccc-ccccccccccccccccc-cceehhhh-hcCC
Confidence 4555666655431 222111111 2455666666542 22211111 11246666666665421 22211111 2356
Q ss_pred CCccEEecCCCCCCChHHHHHhhcCCCccEEecCC
Q 012414 404 LRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL 438 (464)
Q Consensus 404 ~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~ 438 (464)
.+|+.+.+.. .++..+-.+|.+|++|+.+.+..
T Consensus 310 ~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 310 VKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred CCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 6677777654 34444445556666777666643
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.57 E-value=0.0004 Score=62.26 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=64.7
Q ss_pred HhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcCCCccEEecCCCCCCChHHHHHhhc
Q 012414 348 VSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR 427 (464)
Q Consensus 348 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 427 (464)
+..+++|+.|+|++++.++......+ ..+++|+.|+|+++. ++...-. .+..+++|+.|+|++ +.++......+..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~~-~~~~l~~L~~L~l~~-N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSG-LRFVAPD-AFHFTPRLSRLNLSF-NALESLSWKTVQG 102 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSC-CCEECTT-GGGSCSCCCEEECCS-SCCSCCCSTTTCS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCc-cceeCHH-HhcCCcCCCEEeCCC-CccceeCHHHccc
Confidence 44677899999986445554322222 368999999999975 5543222 234789999999999 7887544333433
Q ss_pred CCCccEEecCCccCCChHHHHHH
Q 012414 428 CSELLFLKLGLCENISDKGLFYI 450 (464)
Q Consensus 428 ~~~L~~L~l~~~~~i~~~~~~~~ 450 (464)
++ |+.|++.+|+--.+..+..+
T Consensus 103 ~~-L~~l~l~~N~~~c~c~l~~~ 124 (347)
T 2ifg_A 103 LS-LQELVLSGNPLHCSCALRWL 124 (347)
T ss_dssp CC-CCEEECCSSCCCCCGGGHHH
T ss_pred CC-ceEEEeeCCCccCCCccHHH
Confidence 44 99999999954434444433
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.51 E-value=0.00055 Score=61.35 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=57.1
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCcHHHHHHHHhcC
Q 012414 324 NCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFC 403 (464)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 403 (464)
.+++|+.|++++++.+....... +..+++|+.|+|+++ .++...... ...+++|+.|+|+++. ++.... .....+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~-~~~~~~ 103 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFNA-LESLSW-KTVQGL 103 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSSC-CSCCCS-TTTCSC
T ss_pred CCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCCc-cceeCH-HHcccC
Confidence 66789999998634555432222 347899999999985 565432222 2378999999999865 443211 112223
Q ss_pred CCccEEecCCCCCCC
Q 012414 404 LRLEEIDLTDCNGVN 418 (464)
Q Consensus 404 ~~L~~L~l~~c~~i~ 418 (464)
.|+.|++.+ +.+.
T Consensus 104 -~L~~l~l~~-N~~~ 116 (347)
T 2ifg_A 104 -SLQELVLSG-NPLH 116 (347)
T ss_dssp -CCCEEECCS-SCCC
T ss_pred -CceEEEeeC-CCcc
Confidence 399999998 5664
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.84 E-value=0.013 Score=52.96 Aligned_cols=149 Identities=15% Similarity=0.255 Sum_probs=71.8
Q ss_pred CCCCcEEecCCCCCCChHHHHHhhcCCCCcEEecCCCCCCCHHHHHHHHhcCCCccEEeccCCCccCHHHHHHHHhcCCC
Q 012414 121 CPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLD 200 (464)
Q Consensus 121 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 200 (464)
+..+..+.+... ........+..+.+|+.+.+.. .+...+...+ ..|.+|+.+.+... ++..+- .....+.+
T Consensus 193 ~~~~~~~~~~~~--~~~i~~~~f~~~~~l~~i~~~~--~~~~i~~~~f-~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~ 264 (379)
T 4h09_A 193 AKTGTEFTIPST--VKTVTAYGFSYGKNLKKITITS--GVTTLGDGAF-YGMKALDEIAIPKN--VTSIGS-FLLQNCTA 264 (379)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCSSCSEEECCT--TCCEECTTTT-TTCSSCCEEEECTT--CCEECT-TTTTTCTT
T ss_pred cccccccccccc--eeEEeecccccccccceeeecc--ceeEEccccc-cCCccceEEEcCCC--ccEeCc-cccceeeh
Confidence 445555555432 2222223344566777777654 2222111111 23777777777542 221111 11235677
Q ss_pred CcEEEccCcccChhHHHHhhcccCCceeEecCCCCCChhHHHHHHhcCCCCceeecccc-cccChhHHHHHHhcCCCCcE
Q 012414 201 LKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRC-KFVSSTGLISVIRGHSGLLQ 279 (464)
Q Consensus 201 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~ 279 (464)
|+.+.+... +.......+..+++|+.+.+.+. .+...+-.++ .+|.+|+.+.+... ..+... .+.+|++|+.
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~ 337 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVF-MDCVKLSSVTLPTALKTIQVY----AFKNCKALST 337 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTT-TTCTTCCEEECCTTCCEECTT----TTTTCTTCCC
T ss_pred hcccccccc-ceecccccccccccccccccccc-ccceehhhhh-cCCCCCCEEEcCccccEEHHH----HhhCCCCCCE
Confidence 777777543 22222234556777888777642 1222222222 23778888877431 222221 2345777887
Q ss_pred EeccC
Q 012414 280 LDAGH 284 (464)
Q Consensus 280 L~l~~ 284 (464)
+.+..
T Consensus 338 i~ip~ 342 (379)
T 4h09_A 338 ISYPK 342 (379)
T ss_dssp CCCCT
T ss_pred EEECC
Confidence 77643
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.14 E-value=0.26 Score=36.41 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=21.9
Q ss_pred CccEEecCCCCCCChHHHHHhhcCCCccEEecCCccCCCh
Q 012414 405 RLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISD 444 (464)
Q Consensus 405 ~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~~~~~i~~ 444 (464)
+|+.|+|++ +.++......|..+++|+.|+|.+|+-.-+
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCCeecc
Confidence 466666666 555544444455566666666666654433
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=68.17 E-value=2.6 Score=30.87 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=19.8
Q ss_pred CCcEEEccCcccChhHHHHhhcccCCceeEecCC
Q 012414 200 DLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGC 233 (464)
Q Consensus 200 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 233 (464)
+|+.|+|++|.++......+..+++|+.|.+.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5666666666554433334455666666666654
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.32 E-value=3.6 Score=28.44 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=15.5
Q ss_pred cCCCccEEecCCCCCCChHHHHHhhcCCCccEEecC
Q 012414 402 FCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLG 437 (464)
Q Consensus 402 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~L~~L~l~ 437 (464)
.|.+|+++.|.. .++..+-.+|..|.+|+.+.+.
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEEC
T ss_pred CCCCCcEEEcCC--chheEcHHHHhccCCccEEEEc
Confidence 344555555544 3333333344445555555544
Done!