Query 012415
Match_columns 464
No_of_seqs 468 out of 2942
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00424 APS_reduc 5'-adenyly 100.0 4E-107 8E-112 837.0 42.5 460 1-464 1-463 (463)
2 PLN02309 5'-adenylylsulfate re 100.0 1E-105 2E-110 825.9 43.5 442 16-464 12-457 (457)
3 KOG0189 Phosphoadenosine phosp 100.0 3.3E-70 7.3E-75 487.9 16.6 234 84-328 18-254 (261)
4 TIGR02057 PAPS_reductase phosp 100.0 5.4E-62 1.2E-66 464.0 22.1 220 88-320 1-226 (226)
5 PRK02090 phosphoadenosine phos 100.0 1.3E-58 2.9E-63 446.3 23.7 227 85-324 13-240 (241)
6 TIGR00434 cysH phosophoadenyly 100.0 6.1E-57 1.3E-61 427.3 21.5 209 100-321 1-212 (212)
7 COG0175 CysH 3'-phosphoadenosi 100.0 2.1E-55 4.5E-60 427.5 21.0 233 84-326 11-247 (261)
8 TIGR02055 APS_reductase thiore 100.0 8.3E-55 1.8E-59 405.2 19.5 190 121-319 2-191 (191)
9 PRK12563 sulfate adenylyltrans 100.0 5.8E-44 1.3E-48 349.8 21.2 192 99-299 25-271 (312)
10 TIGR02039 CysD sulfate adenyly 100.0 2.5E-42 5.5E-47 337.4 17.7 199 99-306 7-275 (294)
11 PRK08557 hypothetical protein; 100.0 9.2E-41 2E-45 341.8 19.6 187 98-297 164-359 (417)
12 PRK05253 sulfate adenylyltrans 100.0 2.2E-40 4.7E-45 326.6 21.0 198 99-306 15-282 (301)
13 PRK13794 hypothetical protein; 100.0 1.1E-39 2.4E-44 341.5 20.4 186 98-296 233-424 (479)
14 PF01507 PAPS_reduct: Phosphoa 100.0 2.1E-40 4.6E-45 303.4 12.9 169 115-295 2-174 (174)
15 PRK13795 hypothetical protein; 100.0 1.5E-37 3.3E-42 336.2 18.1 187 98-296 229-420 (636)
16 PRK08576 hypothetical protein; 100.0 2.3E-33 4.9E-38 288.0 18.4 198 84-296 206-407 (438)
17 cd01713 PAPS_reductase This do 100.0 1.1E-31 2.3E-36 244.1 17.2 167 114-288 1-173 (173)
18 TIGR03183 DNA_S_dndC putative 100.0 4.6E-30 1E-34 263.9 15.7 191 102-295 3-248 (447)
19 PRK06850 hypothetical protein; 100.0 2.4E-29 5.2E-34 261.1 15.6 194 100-295 22-267 (507)
20 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2E-21 4.3E-26 165.4 12.9 107 350-460 7-113 (113)
21 COG3969 Predicted phosphoadeno 99.9 7.6E-22 1.6E-26 190.3 11.1 206 100-308 16-265 (407)
22 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2.8E-20 6.1E-25 155.2 12.7 100 353-460 2-101 (101)
23 cd02996 PDI_a_ERp44 PDIa famil 99.8 6.7E-20 1.4E-24 154.9 12.6 102 353-460 2-108 (108)
24 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 6.5E-20 1.4E-24 153.7 12.4 102 353-460 2-104 (104)
25 KOG0910 Thioredoxin-like prote 99.8 6.3E-20 1.4E-24 159.9 10.6 104 353-463 44-147 (150)
26 cd02993 PDI_a_APS_reductase PD 99.8 1.6E-19 3.6E-24 152.9 12.6 108 353-460 2-109 (109)
27 cd02994 PDI_a_TMX PDIa family, 99.8 3.1E-19 6.7E-24 148.8 12.9 100 353-462 2-101 (101)
28 PF00085 Thioredoxin: Thioredo 99.8 6.2E-19 1.3E-23 146.5 13.0 102 354-462 1-102 (103)
29 cd03065 PDI_b_Calsequestrin_N 99.8 4E-19 8.7E-24 152.4 11.6 104 352-463 9-118 (120)
30 cd02963 TRX_DnaJ TRX domain, D 99.8 5.3E-19 1.2E-23 150.4 11.3 105 355-463 7-111 (111)
31 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.6E-18 3.4E-23 146.3 12.6 103 353-461 1-109 (109)
32 COG3118 Thioredoxin domain-con 99.8 1.7E-18 3.7E-23 166.2 12.3 107 352-463 23-129 (304)
33 cd03001 PDI_a_P5 PDIa family, 99.8 5E-18 1.1E-22 141.5 13.2 102 353-460 1-102 (103)
34 PTZ00443 Thioredoxin domain-co 99.8 6.3E-18 1.4E-22 160.4 13.7 107 351-462 29-137 (224)
35 cd02999 PDI_a_ERp44_like PDIa 99.8 3.8E-18 8.2E-23 142.4 10.8 92 361-460 8-100 (100)
36 cd03005 PDI_a_ERp46 PDIa famil 99.8 6.5E-18 1.4E-22 140.5 11.9 99 354-460 2-102 (102)
37 PHA02278 thioredoxin-like prot 99.7 8.2E-18 1.8E-22 140.9 11.2 94 359-459 4-100 (103)
38 cd02956 ybbN ybbN protein fami 99.7 1.2E-17 2.5E-22 137.8 11.8 96 360-461 1-96 (96)
39 cd02948 TRX_NDPK TRX domain, T 99.7 1.1E-17 2.4E-22 140.0 11.6 98 357-463 5-102 (102)
40 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.4E-17 3E-22 138.8 12.2 102 353-460 1-104 (104)
41 cd02954 DIM1 Dim1 family; Dim1 99.7 5.6E-18 1.2E-22 143.4 9.5 79 359-441 2-80 (114)
42 PRK09381 trxA thioredoxin; Pro 99.7 2.9E-17 6.3E-22 138.8 13.6 106 351-463 2-107 (109)
43 PRK10996 thioredoxin 2; Provis 99.7 3.9E-17 8.5E-22 144.5 13.6 103 353-463 36-138 (139)
44 cd02998 PDI_a_ERp38 PDIa famil 99.7 3.7E-17 7.9E-22 136.4 12.1 103 353-460 1-105 (105)
45 cd02997 PDI_a_PDIR PDIa family 99.7 4.1E-17 8.9E-22 136.1 12.2 101 353-460 1-104 (104)
46 cd02985 TRX_CDSP32 TRX family, 99.7 4.3E-17 9.2E-22 136.7 12.1 98 358-462 2-101 (103)
47 KOG0190 Protein disulfide isom 99.7 1.3E-17 2.8E-22 172.0 10.6 106 350-462 23-130 (493)
48 TIGR01126 pdi_dom protein disu 99.7 5.4E-17 1.2E-21 134.6 12.3 100 357-463 1-101 (102)
49 cd02962 TMX2 TMX2 family; comp 99.7 4.4E-17 9.4E-22 145.7 12.4 105 352-460 28-148 (152)
50 cd03007 PDI_a_ERp29_N PDIa fam 99.7 3.7E-17 8.1E-22 138.8 11.2 101 353-463 2-115 (116)
51 KOG0190 Protein disulfide isom 99.7 2.7E-17 5.9E-22 169.6 10.4 116 340-462 354-471 (493)
52 cd03000 PDI_a_TMX3 PDIa family 99.7 1.1E-16 2.4E-21 134.2 11.7 95 360-463 7-103 (104)
53 KOG0907 Thioredoxin [Posttrans 99.7 1.1E-16 2.4E-21 134.3 10.6 86 371-463 20-105 (106)
54 cd02965 HyaE HyaE family; HyaE 99.7 1.4E-16 3E-21 134.0 10.3 100 351-458 9-110 (111)
55 cd02989 Phd_like_TxnDC9 Phosdu 99.7 3.1E-16 6.7E-21 133.8 12.2 102 352-460 4-112 (113)
56 cd02957 Phd_like Phosducin (Ph 99.7 2.1E-16 4.4E-21 134.8 10.2 103 352-460 4-112 (113)
57 cd02992 PDI_a_QSOX PDIa family 99.7 5.5E-16 1.2E-20 132.5 12.7 103 353-458 2-110 (114)
58 PLN00410 U5 snRNP protein, DIM 99.7 5.5E-16 1.2E-20 136.2 12.4 101 358-463 10-119 (142)
59 cd02961 PDI_a_family Protein D 99.7 4.6E-16 1E-20 127.8 11.3 99 356-460 2-101 (101)
60 TIGR01068 thioredoxin thioredo 99.7 1.4E-15 3E-20 125.6 12.7 100 357-463 1-100 (101)
61 cd02953 DsbDgamma DsbD gamma f 99.6 9.3E-16 2E-20 128.5 10.6 95 360-461 2-104 (104)
62 cd02986 DLP Dim1 family, Dim1- 99.6 2.7E-15 5.9E-20 126.2 12.4 100 360-463 3-110 (114)
63 cd02984 TRX_PICOT TRX domain, 99.6 1.6E-15 3.5E-20 125.1 10.8 95 359-460 2-96 (97)
64 cd02950 TxlA TRX-like protein 99.6 4E-15 8.7E-20 132.1 12.7 98 359-463 10-109 (142)
65 cd02987 Phd_like_Phd Phosducin 99.6 5.4E-15 1.2E-19 135.7 11.7 107 352-463 62-174 (175)
66 TIGR01130 ER_PDI_fam protein d 99.6 6.4E-15 1.4E-19 154.9 13.6 105 353-463 2-108 (462)
67 PTZ00102 disulphide isomerase; 99.6 8.7E-15 1.9E-19 155.0 14.6 108 351-463 356-464 (477)
68 PTZ00102 disulphide isomerase; 99.6 1E-14 2.2E-19 154.5 13.8 104 352-463 32-137 (477)
69 cd02949 TRX_NTR TRX domain, no 99.6 1.2E-14 2.7E-19 120.2 11.2 87 370-461 11-97 (97)
70 PTZ00051 thioredoxin; Provisio 99.6 1.1E-14 2.3E-19 120.4 10.3 94 354-457 2-96 (98)
71 cd02975 PfPDO_like_N Pyrococcu 99.6 2E-14 4.3E-19 122.7 11.0 88 371-463 21-109 (113)
72 KOG4277 Uncharacterized conser 99.6 4.8E-15 1E-19 141.0 7.4 88 371-463 42-131 (468)
73 TIGR01295 PedC_BrcD bacterioci 99.5 4.7E-14 1E-18 121.9 11.7 101 353-461 7-121 (122)
74 KOG0912 Thiol-disulfide isomer 99.5 1.5E-14 3.2E-19 138.2 8.7 100 357-462 1-104 (375)
75 cd02951 SoxW SoxW family; SoxW 99.5 8.9E-14 1.9E-18 120.5 11.9 97 361-463 5-118 (125)
76 cd02988 Phd_like_VIAF Phosduci 99.5 8.6E-14 1.9E-18 129.5 10.7 105 352-463 82-191 (192)
77 cd02947 TRX_family TRX family; 99.5 1.9E-13 4E-18 110.0 10.8 92 361-461 2-93 (93)
78 KOG0908 Thioredoxin-like prote 99.5 8.9E-14 1.9E-18 129.7 9.6 102 354-463 3-105 (288)
79 cd01992 PP-ATPase N-terminal d 99.5 1.4E-13 3.1E-18 127.3 10.6 154 114-280 1-167 (185)
80 cd02982 PDI_b'_family Protein 99.5 2.5E-13 5.4E-18 113.2 10.9 88 371-463 11-102 (103)
81 TIGR01130 ER_PDI_fam protein d 99.5 3E-13 6.6E-18 142.2 13.2 106 351-463 345-453 (462)
82 cd02952 TRP14_like Human TRX-r 99.5 2.7E-13 5.8E-18 116.1 10.3 96 359-460 9-118 (119)
83 TIGR02432 lysidine_TilS_N tRNA 99.4 2.5E-12 5.4E-17 119.5 11.4 157 114-280 1-171 (189)
84 TIGR00411 redox_disulf_1 small 99.4 2.9E-12 6.3E-17 102.1 10.1 80 375-463 2-81 (82)
85 cd01993 Alpha_ANH_like_II This 99.4 7.3E-12 1.6E-16 115.6 12.7 159 114-278 1-176 (185)
86 cd02959 ERp19 Endoplasmic reti 99.3 4.2E-12 9.1E-17 109.0 7.7 89 370-461 17-110 (117)
87 TIGR02187 GlrX_arch Glutaredox 99.3 9.9E-12 2.1E-16 118.1 10.3 89 372-463 19-110 (215)
88 KOG0191 Thioredoxin/protein di 99.3 9.1E-12 2E-16 128.5 10.5 101 355-462 32-132 (383)
89 KOG2644 3'-phosphoadenosine 5' 99.3 2.1E-12 4.5E-17 123.5 4.7 164 101-296 64-248 (282)
90 KOG0191 Thioredoxin/protein di 99.3 1.2E-11 2.6E-16 127.7 10.6 106 353-463 145-251 (383)
91 PTZ00062 glutaredoxin; Provisi 99.3 1.9E-11 4.1E-16 114.4 10.6 89 358-463 5-93 (204)
92 PRK03147 thiol-disulfide oxido 99.3 6.5E-11 1.4E-15 108.1 12.7 107 353-464 45-172 (173)
93 PRK00293 dipZ thiol:disulfide 99.2 4.4E-11 9.5E-16 129.1 12.4 103 358-464 459-570 (571)
94 TIGR02187 GlrX_arch Glutaredox 99.2 5.5E-11 1.2E-15 113.0 10.6 95 357-462 120-214 (215)
95 cd02955 SSP411 TRX domain, SSP 99.2 6.1E-11 1.3E-15 102.5 9.6 99 358-463 4-118 (124)
96 TIGR00412 redox_disulf_2 small 99.2 5.4E-11 1.2E-15 94.0 8.3 74 377-461 3-76 (76)
97 PRK14018 trifunctional thiored 99.2 8.6E-11 1.9E-15 123.9 12.0 89 371-463 55-172 (521)
98 PHA02125 thioredoxin-like prot 99.2 9.5E-11 2.1E-15 92.3 8.8 72 376-460 2-73 (75)
99 PRK10696 tRNA 2-thiocytidine b 99.2 2.6E-10 5.6E-15 111.4 13.5 161 101-277 13-198 (258)
100 TIGR02738 TrbB type-F conjugat 99.2 2E-10 4.2E-15 103.1 10.9 89 371-463 49-152 (153)
101 TIGR02740 TraF-like TraF-like 99.2 1.7E-10 3.6E-15 113.3 11.2 88 371-463 165-263 (271)
102 KOG1731 FAD-dependent sulfhydr 99.2 3.9E-11 8.5E-16 124.0 6.4 87 351-440 38-127 (606)
103 PF13098 Thioredoxin_2: Thiore 99.1 9.8E-11 2.1E-15 99.0 6.2 87 370-460 3-112 (112)
104 TIGR00268 conserved hypothetic 99.1 1E-09 2.2E-14 106.8 14.0 151 102-277 3-161 (252)
105 cd03009 TryX_like_TryX_NRX Try 99.1 5E-10 1.1E-14 97.6 9.9 69 371-440 17-111 (131)
106 cd01990 Alpha_ANH_like_I This 99.1 7E-10 1.5E-14 104.3 10.9 142 115-276 1-148 (202)
107 cd02973 TRX_GRX_like Thioredox 99.1 3.4E-10 7.4E-15 86.8 7.2 57 375-435 2-58 (67)
108 cd03008 TryX_like_RdCVF Trypar 99.1 7.2E-10 1.6E-14 98.5 9.8 76 371-448 24-130 (146)
109 cd02964 TryX_like_family Trypa 99.1 7E-10 1.5E-14 97.0 9.6 75 371-447 16-116 (132)
110 PRK15412 thiol:disulfide inter 99.1 1.1E-09 2.3E-14 101.7 11.3 87 371-463 67-175 (185)
111 TIGR00385 dsbE periplasmic pro 99.0 1.4E-09 3.1E-14 99.7 11.0 86 371-463 62-170 (173)
112 PF13905 Thioredoxin_8: Thiore 99.0 1.5E-09 3.2E-14 89.0 10.0 68 372-440 1-93 (95)
113 cd03010 TlpA_like_DsbE TlpA-li 99.0 1.1E-09 2.4E-14 94.8 9.6 79 371-456 24-126 (127)
114 COG1606 ATP-utilizing enzymes 99.0 1.5E-09 3.1E-14 102.6 10.3 154 99-277 5-167 (269)
115 PF01171 ATP_bind_3: PP-loop f 99.0 1.1E-09 2.3E-14 101.4 9.2 152 114-278 1-165 (182)
116 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 1.9E-09 4.2E-14 92.6 10.0 94 355-458 6-120 (123)
117 COG0037 MesJ tRNA(Ile)-lysidin 99.0 1.8E-09 3.9E-14 107.5 10.1 164 104-276 10-188 (298)
118 PRK11509 hydrogenase-1 operon 99.0 7.3E-09 1.6E-13 89.9 11.4 104 353-463 18-123 (132)
119 cd02966 TlpA_like_family TlpA- 98.9 5E-09 1.1E-13 87.4 9.2 69 371-440 18-108 (116)
120 cd01995 ExsB ExsB is a transcr 98.9 2.3E-08 5E-13 91.2 13.8 140 114-282 1-146 (169)
121 PLN02919 haloacid dehalogenase 98.9 5.7E-09 1.2E-13 120.1 11.4 89 371-463 419-535 (1057)
122 TIGR02661 MauD methylamine deh 98.9 1.1E-08 2.4E-13 95.3 11.2 88 371-464 73-179 (189)
123 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 8.7E-09 1.9E-13 83.9 8.7 76 372-457 12-87 (89)
124 PRK13728 conjugal transfer pro 98.9 1.3E-08 2.8E-13 93.3 10.8 83 376-463 73-170 (181)
125 cd01712 ThiI ThiI is required 98.9 1.8E-08 3.9E-13 92.7 11.9 146 114-275 1-157 (177)
126 cd02967 mauD Methylamine utili 98.9 8.9E-09 1.9E-13 87.2 8.9 73 371-448 20-112 (114)
127 cd02958 UAS UAS family; UAS is 98.9 2.5E-08 5.5E-13 84.9 11.5 100 361-463 5-110 (114)
128 cd03012 TlpA_like_DipZ_like Tl 98.8 1.4E-08 3E-13 88.1 9.1 76 371-447 22-123 (126)
129 PRK00074 guaA GMP synthase; Re 98.8 5.6E-08 1.2E-12 103.7 15.6 167 113-285 216-390 (511)
130 COG4232 Thiol:disulfide interc 98.8 1.3E-08 2.8E-13 106.8 10.1 99 361-463 464-567 (569)
131 PRK00919 GMP synthase subunit 98.8 1.3E-07 2.9E-12 94.0 15.3 171 101-285 12-188 (307)
132 TIGR00884 guaA_Cterm GMP synth 98.8 1.8E-07 3.9E-12 93.6 15.7 176 102-285 8-190 (311)
133 cd01997 GMP_synthase_C The C-t 98.8 1E-07 2.2E-12 94.5 13.7 167 114-285 1-175 (295)
134 PF08534 Redoxin: Redoxin; In 98.8 4.7E-08 1E-12 86.6 10.2 77 371-448 27-133 (146)
135 PLN02399 phospholipid hydroper 98.8 5.7E-08 1.2E-12 93.1 11.3 92 371-463 98-233 (236)
136 PRK00143 mnmA tRNA-specific 2- 98.8 1.2E-07 2.6E-12 96.4 14.3 156 114-276 2-182 (346)
137 KOG0913 Thiol-disulfide isomer 98.8 2.4E-09 5.2E-14 99.6 1.5 100 352-461 24-123 (248)
138 PTZ00056 glutathione peroxidas 98.7 5E-08 1.1E-12 91.6 10.0 44 371-414 38-81 (199)
139 PRK14561 hypothetical protein; 98.7 2.1E-07 4.6E-12 86.9 13.7 141 114-272 2-146 (194)
140 KOG0914 Thioredoxin-like prote 98.7 1.8E-08 3.8E-13 92.7 6.0 87 352-441 124-217 (265)
141 PF13899 Thioredoxin_7: Thiore 98.7 2.7E-08 5.9E-13 79.6 6.2 63 371-437 16-81 (82)
142 PRK14665 mnmA tRNA-specific 2- 98.7 1.9E-07 4.2E-12 95.1 13.7 172 113-293 6-196 (360)
143 PLN02412 probable glutathione 98.7 1.5E-07 3.2E-12 85.9 10.7 91 371-463 28-163 (167)
144 cd02960 AGR Anterior Gradient 98.7 7.8E-08 1.7E-12 83.4 8.2 76 361-440 11-90 (130)
145 TIGR00420 trmU tRNA (5-methyla 98.7 3E-07 6.6E-12 93.6 13.8 161 114-278 2-188 (352)
146 PRK08349 hypothetical protein; 98.6 1.7E-07 3.6E-12 88.0 10.4 144 114-275 2-159 (198)
147 PRK10660 tilS tRNA(Ile)-lysidi 98.6 1.3E-07 2.8E-12 99.1 10.7 152 112-277 15-178 (436)
148 cd01998 tRNA_Me_trans tRNA met 98.6 7E-07 1.5E-11 91.0 15.5 162 114-276 1-183 (349)
149 smart00594 UAS UAS domain. 98.6 3.7E-07 7.9E-12 78.9 11.2 99 360-460 14-121 (122)
150 cd01996 Alpha_ANH_like_III Thi 98.6 2.1E-07 4.5E-12 83.5 10.0 111 114-226 3-116 (154)
151 cd02969 PRX_like1 Peroxiredoxi 98.6 4.6E-07 9.9E-12 82.8 11.0 90 371-463 24-151 (171)
152 cd00553 NAD_synthase NAD+ synt 98.6 1.1E-06 2.4E-11 85.4 14.0 162 102-279 12-182 (248)
153 PRK13980 NAD synthetase; Provi 98.6 9.2E-07 2E-11 86.8 13.6 156 101-275 18-180 (265)
154 TIGR02540 gpx7 putative glutat 98.6 4.1E-07 8.8E-12 81.6 10.1 92 371-463 21-152 (153)
155 TIGR00552 nadE NAD+ synthetase 98.5 1.6E-06 3.5E-11 84.3 14.1 159 101-276 10-177 (250)
156 COG0526 TrxA Thiol-disulfide i 98.5 4.4E-07 9.6E-12 74.9 8.8 67 372-441 32-101 (127)
157 TIGR00364 exsB protein. This p 98.5 2.5E-06 5.5E-11 80.1 14.8 164 115-282 1-184 (201)
158 cd00340 GSH_Peroxidase Glutath 98.5 3.4E-07 7.3E-12 82.1 8.2 43 371-414 21-63 (152)
159 cd01999 Argininosuccinate_Synt 98.5 4.1E-07 8.8E-12 93.3 9.8 151 115-278 1-165 (385)
160 TIGR01626 ytfJ_HI0045 conserve 98.5 3.9E-07 8.5E-12 83.9 8.3 86 371-462 58-178 (184)
161 PF02114 Phosducin: Phosducin; 98.5 4.4E-07 9.5E-12 88.5 8.7 107 352-463 125-237 (265)
162 TIGR02196 GlrX_YruB Glutaredox 98.5 5.6E-07 1.2E-11 69.3 7.5 69 376-461 2-74 (74)
163 TIGR00032 argG argininosuccina 98.5 1.4E-06 3E-11 89.7 12.5 148 114-277 1-163 (394)
164 PLN02347 GMP synthetase 98.5 2.6E-06 5.6E-11 91.1 14.8 175 102-285 217-414 (536)
165 TIGR00342 thiazole biosynthesi 98.4 1.3E-06 2.9E-11 89.7 11.2 144 114-274 174-328 (371)
166 cd01659 TRX_superfamily Thiore 98.4 1E-06 2.2E-11 64.4 7.5 61 376-439 1-63 (69)
167 PRK08384 thiamine biosynthesis 98.4 2.2E-06 4.7E-11 87.9 12.4 144 114-277 182-341 (381)
168 PF13728 TraF: F plasmid trans 98.4 2.4E-06 5.3E-11 81.0 10.9 85 371-459 119-213 (215)
169 PRK13820 argininosuccinate syn 98.4 4.2E-06 9.2E-11 85.9 13.4 148 113-277 3-164 (394)
170 PRK00509 argininosuccinate syn 98.4 2.4E-06 5.3E-11 87.7 11.5 149 113-277 3-167 (399)
171 PLN00200 argininosuccinate syn 98.4 1.6E-06 3.6E-11 89.1 10.3 148 113-277 6-171 (404)
172 PRK11106 queuosine biosynthesi 98.4 5.7E-06 1.2E-10 79.2 12.7 178 114-295 3-203 (231)
173 TIGR02200 GlrX_actino Glutared 98.4 2E-06 4.4E-11 67.1 8.1 70 376-461 2-76 (77)
174 TIGR03573 WbuX N-acetyl sugar 98.4 3.7E-06 7.9E-11 85.6 12.1 123 101-225 46-173 (343)
175 PTZ00256 glutathione peroxidas 98.3 2.9E-06 6.2E-11 78.6 10.2 44 371-414 39-83 (183)
176 cd03017 PRX_BCP Peroxiredoxin 98.3 2.4E-06 5.2E-11 74.9 8.6 87 371-459 22-138 (140)
177 PRK01565 thiamine biosynthesis 98.3 4E-06 8.7E-11 86.8 11.5 156 114-294 178-346 (394)
178 TIGR03137 AhpC peroxiredoxin. 98.3 2.8E-06 6.2E-11 78.9 9.4 93 371-464 30-156 (187)
179 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 1.7E-06 3.8E-11 74.0 7.2 69 371-440 24-119 (124)
180 PRK04527 argininosuccinate syn 98.3 4.4E-06 9.5E-11 85.6 11.3 146 113-277 3-169 (400)
181 PF06508 QueC: Queuosine biosy 98.3 3.1E-06 6.6E-11 80.0 9.2 174 114-293 1-197 (209)
182 COG2143 Thioredoxin-related pr 98.3 9.8E-06 2.1E-10 71.2 11.5 89 370-461 40-146 (182)
183 cd03015 PRX_Typ2cys Peroxiredo 98.3 5.2E-06 1.1E-10 76.0 10.4 92 371-463 28-156 (173)
184 PRK14664 tRNA-specific 2-thiou 98.2 1.4E-05 3.1E-10 81.3 12.3 157 113-276 6-177 (362)
185 PRK09437 bcp thioredoxin-depen 98.2 9.5E-06 2.1E-10 72.6 9.7 77 371-448 29-138 (154)
186 PRK10382 alkyl hydroperoxide r 98.2 1.3E-05 2.7E-10 74.5 10.3 93 371-464 30-156 (187)
187 PF07912 ERp29_N: ERp29, N-ter 98.2 5.4E-05 1.2E-09 64.2 13.0 104 352-462 4-117 (126)
188 KOG2501 Thioredoxin, nucleored 98.2 4.6E-06 1E-10 74.0 6.7 69 371-440 32-126 (157)
189 PF01216 Calsequestrin: Calseq 98.1 1.9E-05 4E-10 78.0 11.3 103 352-463 34-143 (383)
190 PF06110 DUF953: Eukaryotic pr 98.1 1.4E-05 3E-10 68.4 8.6 97 360-461 6-118 (119)
191 cd03018 PRX_AhpE_like Peroxire 98.1 1.4E-05 3.1E-10 70.8 9.1 88 373-461 29-148 (149)
192 PRK00522 tpx lipid hydroperoxi 98.1 1.9E-05 4.1E-10 72.0 9.9 88 371-461 43-166 (167)
193 cd02970 PRX_like2 Peroxiredoxi 98.1 1.8E-05 3.9E-10 69.8 9.4 45 372-416 23-68 (149)
194 PF13848 Thioredoxin_6: Thiore 98.1 5.3E-05 1.1E-09 69.3 12.7 104 352-462 77-184 (184)
195 TIGR02739 TraF type-F conjugat 98.1 3.5E-05 7.6E-10 74.7 11.2 86 372-461 150-245 (256)
196 KOG3425 Uncharacterized conser 98.1 1.9E-05 4E-10 66.4 7.9 77 360-438 13-104 (128)
197 PRK13190 putative peroxiredoxi 98.0 2.7E-05 5.8E-10 73.3 9.9 91 372-464 27-154 (202)
198 cd01994 Alpha_ANH_like_IV This 98.0 2.5E-05 5.5E-10 73.0 9.5 123 114-269 1-133 (194)
199 TIGR02180 GRX_euk Glutaredoxin 98.0 1.1E-05 2.4E-10 64.2 6.0 59 376-440 1-63 (84)
200 PF14595 Thioredoxin_9: Thiore 98.0 1.5E-05 3.3E-10 69.4 7.4 98 357-463 28-128 (129)
201 cd03014 PRX_Atyp2cys Peroxired 98.0 2.7E-05 5.9E-10 68.6 8.5 67 371-440 25-121 (143)
202 PRK01269 tRNA s(4)U8 sulfurtra 98.0 3.7E-05 8E-10 81.8 10.5 142 114-274 179-333 (482)
203 PRK13703 conjugal pilus assemb 98.0 6.5E-05 1.4E-09 72.4 10.9 84 372-461 143-238 (248)
204 PRK15000 peroxidase; Provision 97.9 4.9E-05 1.1E-09 71.4 9.8 93 371-464 33-162 (200)
205 PF03190 Thioredox_DsbH: Prote 97.9 2.1E-05 4.5E-10 70.8 6.8 78 357-440 25-114 (163)
206 COG2117 Predicted subunit of t 97.9 2.5E-05 5.3E-10 69.0 7.0 104 114-225 2-109 (198)
207 cd02991 UAS_ETEA UAS family, E 97.9 8.9E-05 1.9E-09 63.4 9.6 100 361-463 5-112 (116)
208 PF13192 Thioredoxin_3: Thiore 97.9 0.00011 2.3E-09 57.9 9.0 74 377-461 3-76 (76)
209 PTZ00137 2-Cys peroxiredoxin; 97.9 0.00011 2.3E-09 71.7 10.7 93 371-464 97-225 (261)
210 cd03016 PRX_1cys Peroxiredoxin 97.8 9.1E-05 2E-09 69.7 9.7 90 374-464 28-154 (203)
211 KOG3414 Component of the U4/U6 97.8 0.00026 5.7E-09 60.0 11.1 100 359-462 11-118 (142)
212 cd01986 Alpha_ANH_like Adenine 97.8 7.4E-05 1.6E-09 62.3 7.3 44 115-158 1-47 (103)
213 PF02568 ThiI: Thiamine biosyn 97.8 0.0001 2.2E-09 68.8 8.6 142 113-274 4-161 (197)
214 KOG2603 Oligosaccharyltransfer 97.8 0.00018 3.9E-09 70.2 10.3 112 350-463 38-165 (331)
215 cd02971 PRX_family Peroxiredox 97.8 0.00011 2.5E-09 64.1 8.4 77 371-448 21-128 (140)
216 PRK13599 putative peroxiredoxi 97.8 0.00016 3.5E-09 68.6 10.0 92 372-464 28-156 (215)
217 PF03054 tRNA_Me_trans: tRNA m 97.8 0.00022 4.8E-09 72.5 11.5 158 114-275 2-186 (356)
218 PRK10606 btuE putative glutath 97.8 6.6E-05 1.4E-09 69.4 7.0 61 371-433 24-94 (183)
219 COG0603 Predicted PP-loop supe 97.8 8.7E-05 1.9E-09 69.9 7.8 171 114-294 4-200 (222)
220 cd02968 SCO SCO (an acronym fo 97.7 0.00011 2.4E-09 64.4 7.8 45 371-415 21-69 (142)
221 cd03072 PDI_b'_ERp44 PDIb' fam 97.7 0.00034 7.4E-09 59.3 10.5 101 354-463 1-107 (111)
222 PF02540 NAD_synthase: NAD syn 97.7 0.00014 3E-09 70.4 8.6 163 102-280 7-174 (242)
223 KOG1672 ATP binding protein [P 97.7 6.9E-05 1.5E-09 68.3 5.9 82 353-441 67-149 (211)
224 PRK13189 peroxiredoxin; Provis 97.7 0.00021 4.5E-09 68.3 9.5 93 371-464 34-163 (222)
225 cd02976 NrdH NrdH-redoxin (Nrd 97.7 0.00014 3.1E-09 55.5 6.9 67 376-459 2-72 (73)
226 PTZ00323 NAD+ synthase; Provis 97.7 0.00054 1.2E-08 68.0 12.4 159 104-275 37-211 (294)
227 PRK11200 grxA glutaredoxin 1; 97.7 0.00013 2.7E-09 58.7 6.5 75 375-462 2-81 (85)
228 PRK13191 putative peroxiredoxi 97.6 0.00034 7.3E-09 66.5 9.8 92 372-464 33-161 (215)
229 cd02983 P5_C P5 family, C-term 97.6 0.0013 2.9E-08 57.3 12.5 105 353-463 3-114 (130)
230 cd02981 PDI_b_family Protein D 97.6 0.00081 1.8E-08 55.0 10.1 89 360-462 8-96 (97)
231 TIGR03679 arCOG00187 arCOG0018 97.5 0.00032 6.9E-09 66.8 8.4 127 116-274 1-136 (218)
232 KOG0911 Glutaredoxin-related p 97.5 8.3E-05 1.8E-09 69.4 4.2 67 371-441 16-82 (227)
233 PRK10877 protein disulfide iso 97.5 0.00045 9.8E-09 66.4 9.0 82 371-464 106-231 (232)
234 PTZ00253 tryparedoxin peroxida 97.5 0.00059 1.3E-08 64.0 9.5 93 371-464 35-164 (199)
235 PRK00876 nadE NAD synthetase; 97.5 0.0039 8.5E-08 62.8 15.3 71 101-171 20-95 (326)
236 PRK15317 alkyl hydroperoxide r 97.4 0.00072 1.6E-08 72.7 10.7 96 355-462 101-196 (517)
237 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.0014 3.1E-08 55.6 10.1 99 355-463 2-110 (111)
238 TIGR03143 AhpF_homolog putativ 97.4 0.00067 1.4E-08 73.6 10.2 95 353-460 459-554 (555)
239 cd01991 Asn_Synthase_B_C The C 97.4 0.00074 1.6E-08 65.9 9.3 117 103-226 3-130 (269)
240 COG0482 TrmU Predicted tRNA(5- 97.4 0.0034 7.4E-08 63.3 13.7 166 113-280 4-189 (356)
241 PF00462 Glutaredoxin: Glutare 97.4 0.00071 1.5E-08 50.4 6.7 52 376-435 1-55 (60)
242 PF02966 DIM1: Mitosis protein 97.3 0.0039 8.5E-08 53.7 11.4 100 359-463 8-116 (133)
243 TIGR02183 GRXA Glutaredoxin, G 97.3 0.00066 1.4E-08 54.7 5.8 74 376-462 2-80 (86)
244 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.00096 2.1E-08 52.6 6.1 57 376-440 2-62 (82)
245 PRK05370 argininosuccinate syn 97.1 0.0041 8.8E-08 64.4 11.5 151 112-277 11-184 (447)
246 cd03020 DsbA_DsbC_DsbG DsbA fa 97.1 0.0014 3.1E-08 61.2 7.0 77 371-460 76-197 (197)
247 TIGR03140 AhpF alkyl hydropero 97.0 0.0037 8E-08 67.3 10.8 95 355-461 102-196 (515)
248 KOG3170 Conserved phosducin-li 97.0 0.0044 9.5E-08 56.9 9.4 103 352-461 91-198 (240)
249 cd02066 GRX_family Glutaredoxi 97.0 0.0022 4.8E-08 48.5 6.5 55 376-440 2-59 (72)
250 PRK10329 glutaredoxin-like pro 97.0 0.0034 7.3E-08 50.1 7.7 71 376-462 3-75 (81)
251 KOG2805 tRNA (5-methylaminomet 97.0 0.018 3.9E-07 56.5 13.9 162 113-276 6-193 (377)
252 PRK13981 NAD synthetase; Provi 97.0 0.0095 2.1E-07 64.5 13.4 70 101-170 268-341 (540)
253 PF05768 DUF836: Glutaredoxin- 96.9 0.0021 4.5E-08 51.2 5.6 78 376-461 2-81 (81)
254 TIGR02194 GlrX_NrdH Glutaredox 96.9 0.0022 4.8E-08 49.6 5.7 67 376-458 1-70 (72)
255 PRK02628 nadE NAD synthetase; 96.9 0.012 2.6E-07 65.4 13.3 145 112-273 361-522 (679)
256 TIGR02190 GlrX-dom Glutaredoxi 96.9 0.0034 7.3E-08 49.6 6.4 71 372-460 6-78 (79)
257 KOG3171 Conserved phosducin-li 96.8 0.0034 7.4E-08 58.1 7.0 106 353-463 139-250 (273)
258 PRK00768 nadE NAD synthetase; 96.8 0.011 2.3E-07 58.0 10.4 159 102-275 27-200 (268)
259 TIGR03143 AhpF_homolog putativ 96.8 0.01 2.2E-07 64.6 11.3 87 372-463 366-453 (555)
260 TIGR02181 GRX_bact Glutaredoxi 96.8 0.0029 6.3E-08 49.7 5.4 55 376-440 1-58 (79)
261 PF11009 DUF2847: Protein of u 96.7 0.0087 1.9E-07 49.9 8.2 94 358-456 6-104 (105)
262 PF07449 HyaE: Hydrogenase-1 e 96.7 0.0035 7.7E-08 52.5 5.7 94 351-452 8-103 (107)
263 PF00733 Asn_synthase: Asparag 96.7 0.014 3E-07 56.0 10.7 121 101-226 3-134 (255)
264 TIGR00290 MJ0570_dom MJ0570-re 96.7 0.0068 1.5E-07 57.8 8.2 116 115-268 3-129 (223)
265 cd03418 GRX_GRXb_1_3_like Glut 96.7 0.0052 1.1E-07 47.6 6.3 55 376-440 2-60 (75)
266 cd03027 GRX_DEP Glutaredoxin ( 96.7 0.0059 1.3E-07 47.3 6.4 54 376-440 3-60 (73)
267 TIGR02189 GlrX-like_plant Glut 96.6 0.0043 9.3E-08 51.4 5.8 55 376-440 10-70 (99)
268 PF00764 Arginosuc_synth: Argi 96.6 0.0033 7.2E-08 64.5 6.1 154 116-284 1-169 (388)
269 COG0519 GuaA GMP synthase, PP- 96.6 0.0085 1.8E-07 57.9 8.1 173 104-288 12-197 (315)
270 PHA03050 glutaredoxin; Provisi 96.6 0.0055 1.2E-07 51.7 6.1 58 376-440 15-78 (108)
271 PRK11657 dsbG disulfide isomer 96.4 0.016 3.4E-07 56.4 9.3 84 371-461 116-249 (251)
272 TIGR00365 monothiol glutaredox 96.4 0.015 3.3E-07 47.9 7.5 59 372-440 11-76 (97)
273 PF13848 Thioredoxin_6: Thiore 96.3 0.029 6.3E-07 51.0 10.0 68 389-463 7-74 (184)
274 cd02972 DsbA_family DsbA famil 96.3 0.014 2.9E-07 46.7 6.5 60 376-437 1-91 (98)
275 cd03029 GRX_hybridPRX5 Glutare 96.2 0.016 3.5E-07 44.6 6.4 67 376-460 3-71 (72)
276 cd03028 GRX_PICOT_like Glutare 96.2 0.016 3.5E-07 47.0 6.6 59 372-440 7-72 (90)
277 PF00837 T4_deiodinase: Iodoth 96.2 0.044 9.5E-07 52.3 10.3 59 352-411 82-140 (237)
278 COG0695 GrxC Glutaredoxin and 96.2 0.017 3.6E-07 45.9 6.3 52 376-435 3-59 (80)
279 cd01984 AANH_like Adenine nucl 96.1 0.02 4.3E-07 45.7 6.8 53 115-173 1-57 (86)
280 TIGR01536 asn_synth_AEB aspara 96.0 0.048 1E-06 58.0 10.8 106 113-226 254-370 (467)
281 COG0137 ArgG Argininosuccinate 95.9 0.092 2E-06 53.3 11.5 146 113-281 5-173 (403)
282 cd03067 PDI_b_PDIR_N PDIb fami 95.9 0.072 1.6E-06 43.8 8.7 96 359-462 9-110 (112)
283 PRK10638 glutaredoxin 3; Provi 95.8 0.029 6.2E-07 44.6 6.2 55 376-440 4-61 (83)
284 COG0301 ThiI Thiamine biosynth 95.8 0.058 1.3E-06 55.2 9.8 144 114-274 177-332 (383)
285 cd03069 PDI_b_ERp57 PDIb famil 95.3 0.22 4.9E-06 41.4 10.1 89 359-462 8-102 (104)
286 PRK10824 glutaredoxin-4; Provi 95.2 0.063 1.4E-06 45.7 6.5 66 361-440 7-79 (115)
287 TIGR00289 conserved hypothetic 95.2 0.049 1.1E-06 51.9 6.5 55 114-170 2-64 (222)
288 cd03023 DsbA_Com1_like DsbA fa 95.1 0.046 9.9E-07 48.0 5.8 33 371-403 4-36 (154)
289 COG1365 Predicted ATPase (PP-l 95.1 0.093 2E-06 49.0 7.8 136 114-276 62-204 (255)
290 COG0171 NadE NAD synthase [Coe 94.9 0.27 5.9E-06 48.1 11.0 166 101-280 13-190 (268)
291 cd03066 PDI_b_Calsequestrin_mi 94.9 0.54 1.2E-05 38.8 11.3 96 355-462 3-99 (102)
292 COG1225 Bcp Peroxiredoxin [Pos 94.7 0.38 8.2E-06 43.3 10.3 92 371-463 29-155 (157)
293 KOG2640 Thioredoxin [Function 94.6 0.016 3.5E-07 56.8 1.6 88 370-463 74-161 (319)
294 COG2102 Predicted ATPases of P 94.5 0.13 2.9E-06 48.4 7.5 125 114-274 2-136 (223)
295 cd03013 PRX5_like Peroxiredoxi 94.3 0.091 2E-06 47.1 5.6 45 372-416 29-76 (155)
296 KOG1752 Glutaredoxin and relat 94.3 0.12 2.5E-06 43.3 5.8 67 361-440 6-76 (104)
297 KOG1622 GMP synthase [Nucleoti 93.9 0.27 5.8E-06 50.7 8.6 73 101-173 218-294 (552)
298 PTZ00062 glutaredoxin; Provisi 93.8 0.2 4.4E-06 47.1 7.2 66 361-440 105-177 (204)
299 PRK12759 bifunctional gluaredo 93.8 0.13 2.8E-06 53.7 6.4 51 376-435 4-66 (410)
300 PF01902 ATP_bind_4: ATP-bindi 93.7 0.084 1.8E-06 50.2 4.5 57 114-171 2-65 (218)
301 cd03019 DsbA_DsbA DsbA family, 93.1 0.15 3.3E-06 46.1 5.0 38 371-409 14-51 (178)
302 PF13462 Thioredoxin_4: Thiore 92.9 0.31 6.8E-06 43.2 6.8 83 371-462 11-162 (162)
303 KOG2840 Uncharacterized conser 92.0 0.19 4.2E-06 49.8 4.3 153 113-272 52-229 (347)
304 COG0367 AsnB Asparagine syntha 91.7 0.9 2E-05 49.2 9.5 108 112-226 230-346 (542)
305 TIGR03104 trio_amidotrans aspa 91.4 2 4.3E-05 47.1 11.9 106 113-226 261-377 (589)
306 COG1331 Highly conserved prote 90.4 0.51 1.1E-05 51.4 6.0 80 355-440 29-120 (667)
307 cd03068 PDI_b_ERp72 PDIb famil 90.3 4 8.6E-05 34.1 10.2 92 358-462 7-106 (107)
308 cd03031 GRX_GRX_like Glutaredo 90.0 0.91 2E-05 40.4 6.4 52 376-435 2-66 (147)
309 TIGR03108 eps_aminotran_1 exos 89.7 1.7 3.7E-05 48.0 9.7 107 113-226 259-371 (628)
310 PRK09431 asnB asparagine synth 89.2 2 4.3E-05 46.7 9.5 107 113-226 228-355 (554)
311 PRK10954 periplasmic protein d 89.1 0.5 1.1E-05 44.4 4.3 40 372-412 37-79 (207)
312 KOG0573 Asparagine synthase [A 88.9 1.1 2.3E-05 46.6 6.6 76 89-165 226-317 (520)
313 PLN02549 asparagine synthase ( 87.6 1.9 4E-05 47.2 8.0 56 113-171 226-293 (578)
314 cd03060 GST_N_Omega_like GST_N 85.6 1.9 4.2E-05 32.7 5.1 52 377-434 2-53 (71)
315 cd02978 KaiB_like KaiB-like fa 84.8 3.6 7.8E-05 31.9 6.1 60 375-436 3-62 (72)
316 cd02974 AhpF_NTD_N Alkyl hydro 83.4 11 0.00024 30.7 8.9 75 372-463 19-93 (94)
317 PLN02339 NAD+ synthase (glutam 83.3 5 0.00011 45.0 9.0 66 105-170 340-445 (700)
318 PTZ00077 asparagine synthetase 82.4 4.7 0.0001 44.2 8.2 58 113-172 238-308 (586)
319 cd03041 GST_N_2GST_N GST_N fam 82.3 7.9 0.00017 29.8 7.4 71 376-462 2-75 (77)
320 KOG2507 Ubiquitin regulatory p 81.0 10 0.00022 39.1 9.3 101 361-463 7-110 (506)
321 PRK15317 alkyl hydroperoxide r 80.8 8.7 0.00019 41.3 9.5 77 371-463 17-93 (517)
322 PHA03075 glutaredoxin-like pro 80.7 2.5 5.3E-05 35.8 4.0 30 373-402 2-31 (123)
323 cd02977 ArsC_family Arsenate R 80.3 2 4.4E-05 35.5 3.5 78 376-462 1-85 (105)
324 TIGR03140 AhpF alkyl hydropero 79.6 9.6 0.00021 41.0 9.3 77 372-463 18-94 (515)
325 TIGR02654 circ_KaiB circadian 78.5 6.9 0.00015 31.5 5.8 62 373-436 3-64 (87)
326 PRK09301 circadian clock prote 78.0 7 0.00015 32.5 5.8 64 371-436 4-67 (103)
327 cd03037 GST_N_GRX2 GST_N famil 76.9 12 0.00026 28.1 6.8 67 378-461 3-70 (71)
328 PF13417 GST_N_3: Glutathione 76.6 15 0.00032 28.1 7.3 70 378-463 1-70 (75)
329 cd03040 GST_N_mPGES2 GST_N fam 74.9 12 0.00025 28.6 6.3 72 376-462 2-74 (77)
330 COG0386 BtuE Glutathione perox 74.8 10 0.00022 33.9 6.3 76 353-433 9-94 (162)
331 cd03059 GST_N_SspA GST_N famil 74.5 6.3 0.00014 29.6 4.6 70 377-462 2-71 (73)
332 KOG1706 Argininosuccinate synt 73.1 22 0.00049 35.3 8.8 55 113-169 6-61 (412)
333 PF10281 Ish1: Putative stress 72.3 3.6 7.9E-05 27.5 2.4 22 259-280 3-24 (38)
334 cd03036 ArsC_like Arsenate Red 72.1 4.9 0.00011 33.8 3.7 56 377-440 2-60 (111)
335 cd00570 GST_N_family Glutathio 70.6 16 0.00035 26.2 6.0 53 377-435 2-55 (71)
336 COG0450 AhpC Peroxiredoxin [Po 70.3 19 0.00042 33.4 7.4 92 372-464 33-161 (194)
337 cd03051 GST_N_GTT2_like GST_N 70.1 7.5 0.00016 29.1 4.1 53 377-435 2-57 (74)
338 PRK01655 spxA transcriptional 69.5 6.8 0.00015 34.0 4.1 34 376-416 2-35 (131)
339 PF09822 ABC_transp_aux: ABC-t 67.5 84 0.0018 30.5 11.9 75 351-429 6-88 (271)
340 TIGR01617 arsC_related transcr 67.4 7.9 0.00017 32.8 4.0 33 377-416 2-34 (117)
341 cd03035 ArsC_Yffb Arsenate Red 65.8 7.6 0.00017 32.3 3.6 34 376-416 1-34 (105)
342 KOG2792 Putative cytochrome C 63.9 39 0.00086 32.8 8.3 88 371-461 138-272 (280)
343 PF13743 Thioredoxin_5: Thiore 63.3 13 0.00028 34.0 4.9 32 378-410 2-33 (176)
344 cd03074 PDI_b'_Calsequestrin_C 62.3 95 0.0021 26.2 10.7 108 354-463 3-119 (120)
345 cd03032 ArsC_Spx Arsenate Redu 61.6 14 0.0003 31.2 4.4 34 376-416 2-35 (115)
346 cd02990 UAS_FAF1 UAS family, F 60.5 1.2E+02 0.0026 26.6 10.9 90 370-462 19-131 (136)
347 PRK12559 transcriptional regul 59.8 14 0.00031 32.1 4.3 34 376-416 2-35 (131)
348 cd03045 GST_N_Delta_Epsilon GS 59.6 27 0.00058 26.2 5.4 52 377-434 2-56 (74)
349 PF06053 DUF929: Domain of unk 58.2 33 0.00073 33.3 6.9 58 371-438 57-114 (249)
350 PF07689 KaiB: KaiB domain; I 55.6 5.9 0.00013 31.6 1.0 54 379-434 3-56 (82)
351 cd03055 GST_N_Omega GST_N fami 54.9 31 0.00066 27.4 5.2 54 376-435 19-72 (89)
352 PF04592 SelP_N: Selenoprotein 53.3 34 0.00073 32.8 5.9 46 371-416 25-73 (238)
353 PRK06702 O-acetylhomoserine am 52.4 1.1E+02 0.0024 32.2 10.3 82 98-181 60-144 (432)
354 PF09673 TrbC_Ftype: Type-F co 50.9 85 0.0018 26.4 7.5 71 359-438 10-80 (113)
355 TIGR00269 conserved hypothetic 50.7 13 0.00029 30.8 2.5 25 253-277 3-27 (104)
356 COG1651 DsbG Protein-disulfide 50.0 38 0.00081 32.3 5.9 40 372-411 84-123 (244)
357 PF13743 Thioredoxin_5: Thiore 49.8 13 0.00028 34.0 2.5 36 418-455 137-173 (176)
358 PF02630 SCO1-SenC: SCO1/SenC; 49.5 40 0.00086 30.6 5.7 46 371-416 51-99 (174)
359 COG3019 Predicted metal-bindin 48.8 37 0.00079 29.9 4.9 74 373-462 25-102 (149)
360 COG4545 Glutaredoxin-related p 48.7 30 0.00064 27.1 3.8 55 377-440 5-74 (85)
361 COG3531 Predicted protein-disu 48.7 30 0.00066 32.2 4.6 42 418-462 164-207 (212)
362 PRK13344 spxA transcriptional 48.3 29 0.00064 30.1 4.4 34 376-416 2-35 (132)
363 COG0626 MetC Cystathionine bet 48.3 1.2E+02 0.0025 31.7 9.4 76 98-175 62-138 (396)
364 PF13778 DUF4174: Domain of un 48.0 1.7E+02 0.0037 24.7 9.7 87 374-463 11-111 (118)
365 COG1999 Uncharacterized protei 48.0 54 0.0012 30.8 6.5 45 371-415 66-114 (207)
366 PF07796 DUF1638: Protein of u 47.0 55 0.0012 29.5 6.1 42 139-180 120-162 (166)
367 TIGR02826 RNR_activ_nrdG3 anae 44.5 64 0.0014 28.6 6.0 48 116-170 64-115 (147)
368 COG2761 FrnE Predicted dithiol 43.6 42 0.0009 32.1 4.9 39 418-463 174-212 (225)
369 PF01323 DSBA: DSBA-like thior 42.8 38 0.00081 30.6 4.5 37 418-461 157-193 (193)
370 PF01053 Cys_Met_Meta_PP: Cys/ 42.6 1.4E+02 0.003 31.0 9.0 82 99-182 55-138 (386)
371 PRK09028 cystathionine beta-ly 41.9 1.7E+02 0.0038 30.3 9.7 71 101-173 63-134 (394)
372 cd03025 DsbA_FrnE_like DsbA fa 41.7 33 0.00071 31.1 3.9 28 376-403 3-30 (193)
373 cd03023 DsbA_Com1_like DsbA fa 40.5 36 0.00077 29.2 3.8 36 418-461 119-154 (154)
374 TIGR01324 cysta_beta_ly_B cyst 40.1 1.8E+02 0.0039 29.9 9.5 73 99-173 50-123 (377)
375 cd03056 GST_N_4 GST_N family, 39.3 89 0.0019 23.0 5.4 53 377-435 2-57 (73)
376 COG0278 Glutaredoxin-related p 39.2 89 0.0019 26.0 5.4 52 381-440 27-80 (105)
377 PF01323 DSBA: DSBA-like thior 39.1 67 0.0015 28.9 5.6 39 375-413 1-39 (193)
378 KOG1422 Intracellular Cl- chan 38.7 1.3E+02 0.0029 28.3 7.2 64 383-462 20-83 (221)
379 PF00255 GSHPx: Glutathione pe 38.0 1E+02 0.0022 25.9 5.9 44 371-415 20-63 (108)
380 PRK08114 cystathionine beta-ly 36.9 2.7E+02 0.0058 29.0 10.1 73 99-173 62-135 (395)
381 KOG0373 Serine/threonine speci 36.1 1E+02 0.0022 29.4 6.0 90 126-219 60-164 (306)
382 COG0468 RecA RecA/RadA recombi 36.0 1.1E+02 0.0024 30.3 6.7 60 115-176 65-125 (279)
383 PF08423 Rad51: Rad51; InterP 35.7 99 0.0021 30.0 6.4 64 99-165 22-98 (256)
384 KOG3425 Uncharacterized conser 35.6 1.1E+02 0.0023 26.4 5.6 46 102-147 13-75 (128)
385 cd03061 GST_N_CLIC GST_N famil 35.6 2.2E+02 0.0049 23.0 7.4 66 382-463 20-85 (91)
386 KOG1651 Glutathione peroxidase 34.7 1.5E+02 0.0033 26.9 6.7 45 371-415 33-77 (171)
387 TIGR02742 TrbC_Ftype type-F co 34.2 70 0.0015 27.8 4.5 22 418-440 61-82 (130)
388 TIGR01326 OAH_OAS_sulfhy OAH/O 32.9 3.2E+02 0.007 28.4 10.1 70 101-172 59-129 (418)
389 COG3634 AhpF Alkyl hydroperoxi 31.4 1.7E+02 0.0038 30.1 7.2 92 358-461 104-195 (520)
390 cd06130 DNA_pol_III_epsilon_li 31.1 1.6E+02 0.0035 25.4 6.5 48 99-146 63-112 (156)
391 KOG0912 Thiol-disulfide isomer 30.4 1.4E+02 0.0031 29.8 6.3 96 353-463 211-318 (375)
392 PRK08133 O-succinylhomoserine 30.2 3.5E+02 0.0075 27.9 9.7 71 101-173 63-134 (390)
393 PF01216 Calsequestrin: Calseq 29.7 6.3E+02 0.014 25.9 11.1 99 352-463 146-246 (383)
394 cd03024 DsbA_FrnE DsbA family, 29.5 73 0.0016 29.0 4.1 36 418-460 165-200 (201)
395 PRK08574 cystathionine gamma-s 28.9 3.2E+02 0.007 28.1 9.2 78 101-181 55-133 (385)
396 PRK07050 cystathionine beta-ly 28.8 2.8E+02 0.0061 28.6 8.7 72 100-173 66-138 (394)
397 cd03019 DsbA_DsbA DsbA family, 28.8 87 0.0019 27.7 4.4 20 418-440 133-152 (178)
398 PRK06372 translation initiatio 28.4 3.4E+02 0.0074 26.4 8.6 66 101-170 75-140 (253)
399 KOG4277 Uncharacterized conser 28.2 3E+02 0.0065 27.5 8.1 86 361-463 145-230 (468)
400 cd03030 GRX_SH3BGR Glutaredoxi 26.9 2E+02 0.0044 23.2 5.8 42 379-421 4-45 (92)
401 PRK07812 O-acetylhomoserine am 26.7 3.5E+02 0.0076 28.5 9.1 71 99-171 69-140 (436)
402 COG1751 Uncharacterized conser 26.4 2.1E+02 0.0046 25.7 6.1 57 113-170 29-89 (186)
403 cd03049 GST_N_3 GST_N family, 26.3 1.4E+02 0.0029 22.2 4.5 55 377-435 2-56 (73)
404 PF02677 DUF208: Uncharacteriz 25.6 5.3E+02 0.011 23.7 10.3 91 123-216 9-108 (176)
405 PLN02673 quinolinate synthetas 25.4 1.7E+02 0.0037 32.6 6.4 26 83-108 80-106 (724)
406 PF11287 DUF3088: Protein of u 25.3 1.1E+02 0.0023 25.9 3.9 75 384-462 24-105 (112)
407 PRK05939 hypothetical protein; 24.9 4E+02 0.0088 27.5 9.1 72 98-172 46-118 (397)
408 cd03052 GST_N_GDAP1 GST_N fami 24.6 3E+02 0.0065 20.7 6.2 52 377-434 2-56 (73)
409 PRK05967 cystathionine beta-ly 24.6 4.9E+02 0.011 27.0 9.6 73 99-173 64-137 (395)
410 PF08821 CGGC: CGGC domain; I 24.1 1.6E+02 0.0034 24.7 4.7 63 107-169 29-104 (107)
411 PRK08134 O-acetylhomoserine am 23.9 5.8E+02 0.013 26.8 10.1 73 99-173 64-137 (433)
412 KOG0571 Asparagine synthase (g 23.8 2.9E+02 0.0062 29.2 7.3 57 113-169 226-289 (543)
413 PF10561 UPF0565: Uncharacteri 23.7 90 0.0019 31.3 3.7 53 115-170 196-271 (303)
414 PF12105 SpoU_methylas_C: SpoU 23.6 18 0.00038 26.8 -0.9 27 257-283 23-49 (57)
415 PRK08248 O-acetylhomoserine am 23.5 3.8E+02 0.0083 28.1 8.7 71 100-172 65-136 (431)
416 cd03033 ArsC_15kD Arsenate Red 23.5 92 0.002 26.2 3.3 34 376-416 2-35 (113)
417 PF04134 DUF393: Protein of un 23.3 1E+02 0.0022 25.4 3.5 58 378-440 1-61 (114)
418 PF08806 Sep15_SelM: Sep15/Sel 22.8 85 0.0018 24.7 2.7 32 429-462 41-74 (78)
419 KOG0053 Cystathionine beta-lya 22.4 5E+02 0.011 27.2 8.9 72 98-174 76-151 (409)
420 PRK07810 O-succinylhomoserine 22.3 4.4E+02 0.0096 27.3 8.8 71 100-172 71-142 (403)
421 TIGR01325 O_suc_HS_sulf O-succ 21.9 5.1E+02 0.011 26.4 9.1 71 100-172 55-126 (380)
422 COG2516 Biotin synthase-relate 21.7 49 0.0011 33.2 1.4 29 278-306 279-307 (339)
423 PRK10954 periplasmic protein d 21.6 1.5E+02 0.0033 27.5 4.8 20 418-440 157-176 (207)
424 COG1651 DsbG Protein-disulfide 21.5 1.2E+02 0.0026 28.7 4.1 38 418-463 205-242 (244)
425 cd03146 GAT1_Peptidase_E Type 21.4 3.4E+02 0.0074 25.3 7.1 104 117-220 3-120 (212)
426 PRK06234 methionine gamma-lyas 21.4 4.7E+02 0.01 27.0 8.8 71 100-172 65-136 (400)
427 PF10087 DUF2325: Uncharacteri 21.2 3.6E+02 0.0078 21.6 6.3 77 101-179 12-91 (97)
428 PRK11121 nrdG anaerobic ribonu 21.2 1.9E+02 0.0042 25.6 5.1 46 115-161 67-121 (154)
429 PRK06434 cystathionine gamma-l 21.1 6.3E+02 0.014 26.1 9.6 73 99-173 64-137 (384)
430 cd03053 GST_N_Phi GST_N family 21.0 1.4E+02 0.003 22.2 3.7 71 376-462 2-75 (76)
431 KOG0852 Alkyl hydroperoxide re 20.4 4.9E+02 0.011 24.0 7.3 103 361-464 22-161 (196)
432 PF05988 DUF899: Bacterial pro 20.3 3.5E+02 0.0076 25.6 6.7 75 381-456 82-182 (211)
433 PF00536 SAM_1: SAM domain (St 20.3 80 0.0017 23.1 2.1 28 259-286 2-30 (64)
434 PRK06176 cystathionine gamma-s 20.2 6E+02 0.013 26.0 9.2 70 100-172 51-121 (380)
435 PF07021 MetW: Methionine bios 20.2 3.6E+02 0.0078 25.2 6.7 70 99-169 90-164 (193)
No 1
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=100.00 E-value=3.7e-107 Score=837.02 Aligned_cols=460 Identities=81% Similarity=1.317 Sum_probs=412.2
Q ss_pred CccccccccccccCc-ccccCCcccccccccccceecccccccccc--ccccccccCCCCCCCCCCCCccccccccCCCc
Q 012415 1 MALAVTSSNSISSSS-FALTSSSNDIKVSQIGSFRLVDRAHVASTS--LSQRRSLVRPLNAEPKRNDSVVPLAATLATPE 77 (464)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (464)
||++++|+++++++. .++..++++++++|+|+|+++++.++.+.+ +++||++++|++++++++++++|.+|+.++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T TIGR00424 1 MALAVTSSSTAISGISLSRSGESTEAKAAQIGSFRLLDRPHTISPSVNLSRRRLSVKPLNAEPKRNESIVPSAATTVAPE 80 (463)
T ss_pred CchhhhhHHhhhhccccccccccchhhhhhccccccccccccchhhhhhhcccccccccccccccccccccchhhccCcc
Confidence 999997766555443 233347889999999999999999855444 79999999999999999999999999999998
Q ss_pred ccccccChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHH
Q 012415 78 VAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD 157 (464)
Q Consensus 78 ~~~~~~~~~~~~~l~~~l~~~~~~eil~~a~~~~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~ 157 (464)
..++.-...+++.||++|+.++|++||+|+++.|++++++++|||||++||||+.+.+++++|||+|||++|||||+|++
T Consensus 81 ~~~~~~~~~~l~~l~~~l~~~~~~eil~~a~~~f~~~iavasSG~edsvLlhl~~~~~~~ipV~flDTG~lFpETy~~~d 160 (463)
T TIGR00424 81 VEEKVVEVEDFEKLAKKLENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD 160 (463)
T ss_pred cccccCCHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCEEEEeccHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHH
Confidence 87555557899999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccCcEEEEeeeccCCcccccCCceeec
Q 012415 158 EVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQV 237 (464)
Q Consensus 158 ~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~~~~~ 237 (464)
+++++||++|+++.|+....+++...+|++.++.+++++||.++|++||+|+|+++++||||+||+||+++|++++++++
T Consensus 161 ~v~~~ygl~l~~~~p~~~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~~~awitG~Rr~Qs~~tRa~~~~ve~ 240 (463)
T TIGR00424 161 AVEKQYGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQV 240 (463)
T ss_pred HHHHHhCCceEEECCCcchHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHHhCCcEEeeeccccCccccccCCcccc
Confidence 99999999999999988778888888999888888899999999999999999999999999999999658999999999
Q ss_pred CCCCcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccCCCCCccccccccccCCCcccc
Q 012415 238 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKEC 317 (464)
Q Consensus 238 d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~~~g~~~r~GRw~~~~~~~~ec 317 (464)
|+.+++.+++.++++|+|||++||.+|||.||++|+|||||||++||+||||+|||+||.+|+|+|+|||||++..|+||
T Consensus 241 d~~~~~~~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~npL~~~GY~SIGC~pCT~pv~~ged~RaGRW~w~~~~k~EC 320 (463)
T TIGR00424 241 DPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKEC 320 (463)
T ss_pred cccccccccCCCceEEEeecccCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccC
Confidence 98776655555679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccccCCCCCCCCCCcccccccCCCCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHH
Q 012415 318 GLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVEL 397 (464)
Q Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~l 397 (464)
|||.++++..... +.........+.++|.+..|++|+.+||+++++..+.+++|||+||||||++|+.|.|.|+++
T Consensus 321 GlH~~~~~~~~~~----~~~~~~~~~~~~dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eel 396 (463)
T TIGR00424 321 GLHKGNIKEETLD----GAVNGNGSDAVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLEL 396 (463)
T ss_pred CCCCCCccccccc----hhhhhccccccccccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHH
Confidence 9999877654322 333344677889999999999999999999986567899999999999999999999999999
Q ss_pred HHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 012415 398 ADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 464 (464)
Q Consensus 398 a~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l~ 464 (464)
++++++.++.|++||+|.+..+++.++|+|.++||++||++|...++.|.+|.++.+.|+.||+.||
T Consensus 397 A~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~~ 463 (463)
T TIGR00424 397 AEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLLR 463 (463)
T ss_pred HHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhhC
Confidence 9999875699999999976334542689999999999999997668899876899999999999886
No 2
>PLN02309 5'-adenylylsulfate reductase
Probab=100.00 E-value=1.1e-105 Score=825.94 Aligned_cols=442 Identities=78% Similarity=1.295 Sum_probs=402.0
Q ss_pred ccccCCcccccccccccceecccccccccc--cccccc-ccCCCCCCCCCCCCccccccccCCCcccccccChhhHHHHH
Q 012415 16 FALTSSSNDIKVSQIGSFRLVDRAHVASTS--LSQRRS-LVRPLNAEPKRNDSVVPLAATLATPEVAEKVEGEEDFEQFA 92 (464)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (464)
++++.++++++++|+|+|+++++.++...+ ..++++ +++|+++.+++++++++.+|+.++++..++.+ ..++++||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dl~~ln 90 (457)
T PLN02309 12 SSRSGASSESKAKQIGSLRLLDRGGLSARAYSLSGKRSSAAKPLNAQPAARQAMIPSAATAVAEVPEEEGE-VEDFEKLA 90 (457)
T ss_pred cccccchhhhhhhhcccccccccccchhhhhhhhhhccccccccccccccccccccccccccCCccccccC-hhhHHHHH
Confidence 444458889999999999999998855444 666776 89999999999999999999999887766654 57899999
Q ss_pred HHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012415 93 KELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (464)
Q Consensus 93 ~~l~~~~~~eil~~a~~~~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 172 (464)
++|+.++|++||+|+++.|++++++++|||+|++|+||+.+++++++|||+|||++|||||+|+++++++||++|+++.|
T Consensus 91 ~~l~~~~~~eil~~a~~~~~~~ia~~~SG~ed~vll~l~~~~~~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~P 170 (457)
T PLN02309 91 KELENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFP 170 (457)
T ss_pred HHhhcCCHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECC
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeE
Q 012415 173 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV 252 (464)
Q Consensus 173 ~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~ 252 (464)
+....+++...+|++.++.+++++||.++|++||+|+|+++++||||+||+||+++|++++++++|+.+.+.+++.++++
T Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~~~~~~~~l 250 (457)
T PLN02309 171 DAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPGSLV 250 (457)
T ss_pred CcchHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHhhCCEEEEeeccccCccccccCCeeeecccccccccCCCCee
Confidence 98888888899999988888899999999999999999999999999999999548999999999988776666667899
Q ss_pred EEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccCCCCCccccccccccCCCcccccccccCccccccccc
Q 012415 253 KWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVN 332 (464)
Q Consensus 253 k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~~~g~~~r~GRw~~~~~~~~ecg~~~~~~~~~~~~~~ 332 (464)
|+|||++||.+|||.||++|+|||||||++||.||||+|||+||.+|+|+|+|||||++..|+|||||.+|++...
T Consensus 251 KvnPl~~Wt~~dVw~Yi~~~~lP~npL~~~GY~SIGC~pCT~pv~~g~~~RaGRw~w~~~~k~ECGlH~~~~~~~~---- 326 (457)
T PLN02309 251 KWNPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEED---- 326 (457)
T ss_pred EEcccccCCHHHHHHHHHHcCCCCCcchhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCcccccCCCCCccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877554
Q ss_pred CCCCCCCCCCcccccccCCCCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE
Q 012415 333 GNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 412 (464)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id 412 (464)
++.....+.+...|+|++..|++|+.++|+++++..+.++++||+||||||++|+.|.|.|+++++.+.+.++.|++||
T Consensus 327 -~~~~~~~~~~~~~dl~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD 405 (457)
T PLN02309 327 -NGAANDNGNAAVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFR 405 (457)
T ss_pred -ccccccccccccccccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEE
Confidence 2333344667779999999999999999999987667899999999999999999999999999999987679999999
Q ss_pred cC-CCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 012415 413 AD-GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 464 (464)
Q Consensus 413 ~d-~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l~ 464 (464)
++ .+ .++++++|+|+++|||+||++|...++.|.|+.++.++|++||++|+
T Consensus 406 ~d~~~-~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~~ 457 (457)
T PLN02309 406 ADGDQ-KEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSLR 457 (457)
T ss_pred CCCcc-hHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHhC
Confidence 99 65 88883369999999999999998778999977899999999999986
No 3
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-70 Score=487.93 Aligned_cols=234 Identities=59% Similarity=0.913 Sum_probs=226.4
Q ss_pred ChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh
Q 012415 84 GEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 163 (464)
Q Consensus 84 ~~~~~~~l~~~l~~~~~~eil~~a~~~~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~ 163 (464)
..++++.+|++|++++|+|||+|++..|++.++++|||..|.++++|+.+.+.+++++|+|||++|||||++.+.++++|
T Consensus 18 ~~E~~e~l~kqL~~~sP~eIm~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY 97 (261)
T KOG0189|consen 18 EVEDLEELNKQLENLSPQEIMDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKKY 97 (261)
T ss_pred cHHHHHHHHHHHhhCCHHHHHHHHHHHhhhHHHHHhccccchHHHHHHHHcCCCceeEEeeccccChHHHHHHHHHHHhc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CcEEEEcCChHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccC--cEEEEeeeccCCcccccCCceeecCCC
Q 012415 164 G-IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPV 240 (464)
Q Consensus 164 g-l~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~R~~ES~~~R~~~~~~~~d~~ 240 (464)
| +.|++++|+..+.+..++.+|.+.+|+++++.||+++||+|++|+++++ .+||||.|++|| ++|+.+|++++|+.
T Consensus 98 ~~i~I~~~~pd~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~-gtRselpiVqvD~~ 176 (261)
T KOG0189|consen 98 GNIRIHVYFPDAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQG-GTRSELPIVQVDPV 176 (261)
T ss_pred CceEEEEEcchhHHHHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCC-CcccccceEEecCc
Confidence 9 9999999999999999999999999999999999999999999999999 799999999999 69999999999987
Q ss_pred CcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccCCCCCccccccccccCCCccccccc
Q 012415 241 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 320 (464)
Q Consensus 241 ~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~~~g~~~r~GRw~~~~~~~~ecg~~ 320 (464)
| +++|+|||++|+..|||.||+.+++|||.|++.||+||||+|||+||++|+|||+|||||+ +|+|||||
T Consensus 177 f--------ellK~NPlaN~~~~dV~nyi~t~nVP~NeL~~~GY~SIG~~~~TqpV~~Ge~ERaGRW~~~--~~tECGlH 246 (261)
T KOG0189|consen 177 F--------ELLKINPLANWEFNDVWNYIRTNNVPYNELLAAGYRSIGDEHSTQPVLEGEDERAGRWWGE--KKTECGLH 246 (261)
T ss_pred c--------ceeeecccccccHHHHHHHHHhcCCcHHHHHhcCCeeccCccccCcCCCCcccccccccch--hchhcccc
Confidence 6 5999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred ccCccccc
Q 012415 321 KGNIKQED 328 (464)
Q Consensus 321 ~~~~~~~~ 328 (464)
++|++..+
T Consensus 247 kg~~s~~a 254 (261)
T KOG0189|consen 247 KGNQSKFA 254 (261)
T ss_pred Ccchhhhh
Confidence 99988643
No 4
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=100.00 E-value=5.4e-62 Score=464.00 Aligned_cols=220 Identities=28% Similarity=0.464 Sum_probs=195.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhC-
Q 012415 88 FEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFG- 164 (464)
Q Consensus 88 ~~~l~~~l~~~~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~~-~~i~vv~~DTg~~fpeT~~~~~~~~~~~g- 164 (464)
+++||++|+.++++++|+|+++.|+++++++|||||||+|+ ||+.++. ++++|||+|||++||||++|+++++++|+
T Consensus 1 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~fpET~e~~d~~~~~~~~ 80 (226)
T TIGR02057 1 LDELNEQLEKLTPQEIIAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKDELTKKYYQ 80 (226)
T ss_pred ChhHHHhhccCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 36799999999999999999999998899999999999655 9999987 89999999999999999999999999999
Q ss_pred -CcEEEEcCChHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccC--cEEEEeeeccCCcccccCCceeecCCCC
Q 012415 165 -IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVF 241 (464)
Q Consensus 165 -l~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~R~~ES~~~R~~~~~~~~d~~~ 241 (464)
+++..+.|... ...+....|.+.+ ..+..+||.++|++||+++++++ ++||+|+|++||. .|+++++++.+..
T Consensus 81 ~l~v~~~~~~~~-~~~~~~~~G~~~~-~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~-~Ra~~~~~~~d~~- 156 (226)
T TIGR02057 81 TLNLYKYDGCES-EADFEAKYGKLLW-QKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGS-ARANLPVIEIDEQ- 156 (226)
T ss_pred ceEEEEeCCchh-HHHHHHhcCCCcc-ccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCc-cccCCccccccCC-
Confidence 55555555543 3444556676543 44678999999999999999985 5899999999996 9999999987643
Q ss_pred cCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccCCCCCccccccccccCCCccccccc
Q 012415 242 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 320 (464)
Q Consensus 242 ~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~~~g~~~r~GRw~~~~~~~~ecg~~ 320 (464)
++++|++||++||+.|||.||++|+|||||||++||+||||++||+||.+|+|+|+|||+ +..|+|||||
T Consensus 157 -------~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~npLY~~GY~siGc~~cT~~v~~~~~~R~gRw~--~~~~~eCglh 226 (226)
T TIGR02057 157 -------NGILKVNPLIDWTFEQVYQYLDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK--GKLKTECGIH 226 (226)
T ss_pred -------CCeEEEeehhhCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCcCCCCCCCCCccCccCC--CCCCCCCCCC
Confidence 469999999999999999999999999999999999999999999999999999999985 4458999999
No 5
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=100.00 E-value=1.3e-58 Score=446.33 Aligned_cols=227 Identities=45% Similarity=0.813 Sum_probs=203.3
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh
Q 012415 85 EEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 163 (464)
Q Consensus 85 ~~~~~~l~~~l~~~~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~ 163 (464)
..+++++|++|+.++++++|++++++|+++++|+|||||||+|+ ||+.+.+.+++++|+|||++||||++|+++++++|
T Consensus 13 ~~~~~~~~~~~~~~~~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~ 92 (241)
T PRK02090 13 ALDLAELNAELEGASAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERL 92 (241)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999999999998899999999999766 99999999999999999999999999999999999
Q ss_pred CCcEEEEcCChHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccCcEEEEeeeccCCcccccCCceeecCCCCcC
Q 012415 164 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEG 243 (464)
Q Consensus 164 gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~ 243 (464)
|++++++.|............+.+...-.+..+||.++|+.||+++++++++|++|+|++||. .|+.+++++.++
T Consensus 93 gl~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~itG~R~~es~-~R~~~~~~~~~~---- 167 (241)
T PRK02090 93 LLNLKVYRPDASAAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDAWITGLRREQSG-TRANLPVLEIDG---- 167 (241)
T ss_pred CCCEEEECCCccHHHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCCeEEEechhhCc-hhccCceeeecC----
Confidence 999999998865544443333443222256789999999999999999988899999999997 899988877652
Q ss_pred ccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccCCCCCccccccccccCCCcccccccccC
Q 012415 244 LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN 323 (464)
Q Consensus 244 ~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~~~g~~~r~GRw~~~~~~~~ecg~~~~~ 323 (464)
+..+++||++|++.|||.|++.++|||||||++||+||||++||.|+.+|+++|+|||| +..|+|||||.++
T Consensus 168 ------~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~gr~~--~~~~~ecg~~~~~ 239 (241)
T PRK02090 168 ------GRFKINPLADWTNEDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGRWW--GGLKKECGLHEGN 239 (241)
T ss_pred ------CeEEEeehhhCCHHHHHHHHHHcCCCCChHHHcCCCCcCCCCCCCCCCCCCCccccCCC--CCCCccCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999997 4568999999866
Q ss_pred c
Q 012415 324 I 324 (464)
Q Consensus 324 ~ 324 (464)
+
T Consensus 240 ~ 240 (241)
T PRK02090 240 L 240 (241)
T ss_pred C
Confidence 4
No 6
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=100.00 E-value=6.1e-57 Score=427.33 Aligned_cols=209 Identities=33% Similarity=0.572 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 012415 100 PLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ 178 (464)
Q Consensus 100 ~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~ 178 (464)
++++|++++++|+.+++++|||||||+|| ||+.++.++++|+|+|||.+||||++|+++++++||++|+++.|.... .
T Consensus 1 ~~~~l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~~~~-~ 79 (212)
T TIGR00434 1 AQEIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDLSL-A 79 (212)
T ss_pred CHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCchhH-H
Confidence 47899999999997799999999999766 999999999999999999999999999999999999999999987543 3
Q ss_pred HHHHhcCCCCCCCcchhhhhhccccchHHHHhccCc--EEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEe
Q 012415 179 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256 (464)
Q Consensus 179 ~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~--~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~P 256 (464)
......|.. ++..+.++||.++|++|++++++++. +||+|+|++||+ +|+++.+++.+.. ++.++++|
T Consensus 80 ~~~~~~g~~-~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~-~R~~~~~~~~~~~--------~~~~~v~P 149 (212)
T TIGR00434 80 EQAAKYGDK-LWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGP-SRANLSILNIDEK--------FGILKVLP 149 (212)
T ss_pred HHHHhcCCC-ccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCc-cccCCceeeecCC--------CCcEEEee
Confidence 344556633 24456789999999999999999776 999999999997 9999888776542 36899999
Q ss_pred CccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccCCCCCccccccccccCCCcccccccc
Q 012415 257 VANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK 321 (464)
Q Consensus 257 I~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~~~g~~~r~GRw~~~~~~~~ecg~~~ 321 (464)
|+||++.|||+||.+++|||||||++||+||||++||.|+.+|+++|+||| .+..|+|||||.
T Consensus 150 I~dWt~~dVw~Yi~~~~lp~npLY~~Gy~siGc~~ct~~~~~~~~~r~gr~--~~~~~~ecg~~~ 212 (212)
T TIGR00434 150 LIDWTWKDVYQYIDAHNLPYNPLHDQGYPSIGDYHSTRPVKEGEDERAGRW--KGKAKTECGLHE 212 (212)
T ss_pred hhhCCHHHHHHHHHHcCCCCCchhhcCCCCcCCCCCCCCCCCCCCccCccC--CCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999998 455699999994
No 7
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.1e-55 Score=427.51 Aligned_cols=233 Identities=39% Similarity=0.711 Sum_probs=207.6
Q ss_pred ChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHH
Q 012415 84 GEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKH 162 (464)
Q Consensus 84 ~~~~~~~l~~~l~~~~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~ 162 (464)
....++.+++.++..++++|++|++..+++.++++|||||||+|+ ||+.+...+++|||+|||++||||++|++++.++
T Consensus 11 ~~~~~~~~~~~le~~~~~~i~~~~~~~~~~~~~~~~S~Gkds~V~l~L~~k~~~~~~vif~DTg~~f~Et~~~~d~~~~~ 90 (261)
T COG0175 11 MSENLASLLDKLEAESPIEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEE 90 (261)
T ss_pred hhhhhHHHHHHHHhcCHHHHHHHHHHHcCCCeEEEecCchhHHHHHHHHHHhcCCCcEEEEeCCCcCHHHHHHHHHHHHH
Confidence 345678899999999999999999999999889999999999766 9999999899999999999999999999999999
Q ss_pred hCCcEEEEcCChHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccC--cEEEEeeeccCCcccccCCceeecCCC
Q 012415 163 FGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPV 240 (464)
Q Consensus 163 ~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~R~~ES~~~R~~~~~~~~d~~ 240 (464)
||++++++.|+....+. ...+...+.....+|||.++|++||+++|+++ ++||+|+||+||. +|+++++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~-~Rak~~~~~~~~~ 167 (261)
T COG0175 91 YGLDLKVYRPDDEVAEG--EKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESP-TRAKLPVVSFDSE 167 (261)
T ss_pred cCCeEEEecCccchhhh--hhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEeccccccc-ccccCceeccccC
Confidence 99999999888765444 33333333333455899999999999999988 7999999999997 9999999998864
Q ss_pred CcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccCCC-CCccccccccccCCCcccccc
Q 012415 241 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWEDAKAKECGL 319 (464)
Q Consensus 241 ~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~~~-g~~~r~GRw~~~~~~~~ecg~ 319 (464)
+ ++.+|++||+|||..|||.||..++|||||||++||+||||++||+|+.+ ++++|+|||||+...++|||+
T Consensus 168 ~-------~~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~~~~~~r~~rw~~~~~~~~E~g~ 240 (261)
T COG0175 168 F-------GESIRVNPLADWTELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGL 240 (261)
T ss_pred c-------CCeEEEcchhcCCHHHHHHHHHHhCCCCCcHHhccCCccCcccCCCcCccccccHHHHhhccccchhhhhcc
Confidence 3 36899999999999999999999999999999999999999999999998 999999999998778999999
Q ss_pred cccCccc
Q 012415 320 HKGNIKQ 326 (464)
Q Consensus 320 ~~~~~~~ 326 (464)
|..+...
T Consensus 241 ~~~~~~~ 247 (261)
T COG0175 241 HRADDPD 247 (261)
T ss_pred ccccccc
Confidence 9877643
No 8
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=100.00 E-value=8.3e-55 Score=405.22 Aligned_cols=190 Identities=51% Similarity=0.986 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCCcchhhhhhc
Q 012415 121 GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRV 200 (464)
Q Consensus 121 GGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~ 200 (464)
|..|.|+|||+.++.++++|+|+|||++||||++|+++++++||++++++.|.....++.....|.+.++.+.+++||.+
T Consensus 2 ~~~s~Vll~L~~~~~~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc~~ 81 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECCGI 81 (191)
T ss_pred ChHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHHHH
Confidence 45566777999999999999999999999999999999999999999999887666677777889888776668999999
Q ss_pred cccchHHHHhccCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhh
Q 012415 201 RKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 280 (464)
Q Consensus 201 ~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy 280 (464)
+|++||++++++.++||+|+|++||. .|+++++++.+..+ ++++++||++||..|||+||++|+|||||||
T Consensus 82 ~K~~Pl~~~l~~~~~~i~G~Rr~Es~-~R~~~~~~~~~~~~--------~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~npLY 152 (191)
T TIGR02055 82 RKVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEIDEAF--------GLVKINPLADWTSEDVWEYIADNELPYNPLH 152 (191)
T ss_pred HhHHHHHHHHhcCCEEEEEeccccCc-hhcCCceeeecCCC--------CeEEEEecccCCHHHHHHHHHHcCCCCChHH
Confidence 99999999999999999999999997 99999998887532 4899999999999999999999999999999
Q ss_pred hcCCcccCccCCCccCCCCCccccccccccCCCcccccc
Q 012415 281 SQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL 319 (464)
Q Consensus 281 ~~Gy~siGC~~CT~~~~~g~~~r~GRw~~~~~~~~ecg~ 319 (464)
++||+||||++||+|+.+|+++|+|||||.+..|+||||
T Consensus 153 ~~Gy~siGC~~Ct~~~~~~~~~r~gRw~~~~~~~~ecg~ 191 (191)
T TIGR02055 153 DRGYPSIGCEPCTRPVAPGEDPRAGRWWWEEAAKKECGL 191 (191)
T ss_pred HcCCCCCCCcCCCCCCCCCCCccCcCcCCCCCCCCCCCC
Confidence 999999999999999999999999999999888999997
No 9
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=5.8e-44 Score=349.82 Aligned_cols=192 Identities=21% Similarity=0.383 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 99 ~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~----~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
++++||++++.+|++ ++++|||||||+|+ ||+.++ +++++|+|+|||++||||++|+++++++||++++++.|.
T Consensus 25 esi~ilrea~~~f~~-~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~~ 103 (312)
T PRK12563 25 ESIHILREVVAECSK-PVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHNP 103 (312)
T ss_pred HHHHHHHHHHHhcCC-cEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecCh
Confidence 489999999999976 78999999999766 999986 678999999999999999999999999999999998775
Q ss_pred hHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceee-------cCCCCcC-
Q 012415 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFEG- 243 (464)
Q Consensus 174 ~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~-------~d~~~~~- 243 (464)
.. + ..|... +..+..+||.++|++||+++|. ++++||+|+|++|+. .|++..+++ ||+.+..
T Consensus 104 ~~-~-----~~G~~~-~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~-sRak~~ifs~r~~~~~wD~~~qrP 175 (312)
T PRK12563 104 DG-I-----ARGIVP-FRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEK-SRAKERIFSFRSAFHRWDPKAQRP 175 (312)
T ss_pred HH-H-----HhCCCc-ccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhh-hhccCceecccccccccCccccCh
Confidence 32 1 135433 3456789999999999999997 668999999999996 999998887 4543211
Q ss_pred -------ccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcC---------------------------------
Q 012415 244 -------LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG--------------------------------- 283 (464)
Q Consensus 244 -------~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~G--------------------------------- 283 (464)
.....|..+|++||++||+.|||.||+.++|||||||+.+
T Consensus 176 elw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~r 255 (312)
T PRK12563 176 ELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLVPLYFAKRRPVVERDGLLIMVDDERTPLRPGETPQQRKVR 255 (312)
T ss_pred hhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCCcchhcCCCceEEECCeEEeccccccCCCCCCccccceeE
Confidence 0111246899999999999999999999999999999875
Q ss_pred CcccCccCCCccCCCC
Q 012415 284 YISIGCEPCTRPVLPG 299 (464)
Q Consensus 284 y~siGC~~CT~~~~~g 299 (464)
|+++||++||.++...
T Consensus 256 ~Rtlg~~~~t~~v~s~ 271 (312)
T PRK12563 256 FRTLGCYPLTGAVESD 271 (312)
T ss_pred eeccCCccccCccCCC
Confidence 8888888888877543
No 10
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=100.00 E-value=2.5e-42 Score=337.40 Aligned_cols=199 Identities=24% Similarity=0.413 Sum_probs=166.4
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 99 ~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~----~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
++++||++++.+|++ ++++|||||||+|+ ||+.++ +++++++|+|||++||||++|+++++++||++++++.++
T Consensus 7 esi~ilRe~~~~f~~-~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~v~~~~ 85 (294)
T TIGR02039 7 EAIHIIREVAAEFER-PVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLIVHSNE 85 (294)
T ss_pred HHHHHHHHHHHhcCC-cEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 589999999999986 67899999999766 999886 568999999999999999999999999999999999876
Q ss_pred hHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceee-------cCCCCcC-
Q 012415 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFEG- 243 (464)
Q Consensus 174 ~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~-------~d~~~~~- 243 (464)
.. ...|...+ ..+..+||.++|++||++++. ++++||+|.|+||+. .|++..+++ +|+....
T Consensus 86 ~~------~~~g~~~~-~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~-sRake~i~s~r~~~~~wD~~~q~P 157 (294)
T TIGR02039 86 EG------IADGINPF-TEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEK-SRAKERIFSFRNAFHQWDPKKQRP 157 (294)
T ss_pred hh------hhcCcccc-ccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhh-HhhcCceeeccccccccCccccCc
Confidence 32 23555443 345678999999999999996 668999999999996 999877764 3433111
Q ss_pred -------ccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhc---------------------------------C
Q 012415 244 -------LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQ---------------------------------G 283 (464)
Q Consensus 244 -------~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~---------------------------------G 283 (464)
.....+..++++||++||+.|||.||..++|||||||.. +
T Consensus 158 elw~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~r 237 (294)
T TIGR02039 158 ELWNLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIPIVPLYFAAKRPVVQRDGMLIMVDDVRMPLAPGEVVKERMVR 237 (294)
T ss_pred hhhhccccccccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCeecCccceeeccCeEEecCccccCCCCCCccccccee
Confidence 000124589999999999999999999999999999953 8
Q ss_pred CcccCccCCCccCCCC---------------Ccccccc
Q 012415 284 YISIGCEPCTRPVLPG---------------QHEREGR 306 (464)
Q Consensus 284 y~siGC~~CT~~~~~g---------------~~~r~GR 306 (464)
|+++||+|||.+|... ..||.||
T Consensus 238 ~rt~g~~~~t~~~~s~a~~~~~~~~e~~~~~~~er~~r 275 (294)
T TIGR02039 238 FRTLGCYPLTGAIESDAATVEEIIAETAAARTSERQGR 275 (294)
T ss_pred ecccCcccCCCcccCCCCCHHHHHHHHHhccCcccccc
Confidence 9999999999999865 6788888
No 11
>PRK08557 hypothetical protein; Provisional
Probab=100.00 E-value=9.2e-41 Score=341.82 Aligned_cols=187 Identities=25% Similarity=0.395 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHcCC---cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 98 ASPLEIMDRALEKFGN---DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 98 ~~~~eil~~a~~~~~~---~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
.+++++|++++++|+. .++++|||||||+++ +|+.+...+++|+|+|||.+||||++|+++++++||++++++.+.
T Consensus 164 ~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 164 ENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 4689999999999863 578999999999877 788888888999999999999999999999999999999988754
Q ss_pred hHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhcc---C--cEEEEeeeccCCcccccCCceeecCCCCcCccCCC
Q 012415 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG---L--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGV 248 (464)
Q Consensus 174 ~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~---~--~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~ 248 (464)
.+...+...|.| ..+.+|||.++|+.|+++++++ . .+|++|+|++||. +|++++..+.++. .
T Consensus 244 --~f~~~~~~~G~P---s~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~-~Ra~~~~~~~~~~-------~ 310 (417)
T PRK08557 244 --NFWENLEKEGIP---TKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESF-TRANLDYERKSGF-------I 310 (417)
T ss_pred --HHHHHHhhccCC---cccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccch-hhccCceeccccc-------c
Confidence 345556667754 4568999999999999999976 3 4899999999997 9999987654421 1
Q ss_pred CCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccCC
Q 012415 249 GSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 297 (464)
Q Consensus 249 ~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~~ 297 (464)
++.++++||++||..|||.||..|+|||||||++||.|+||++||.+..
T Consensus 311 ~~~~~i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~ 359 (417)
T PRK08557 311 DFQTNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSALN 359 (417)
T ss_pred cCceeEEecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCccH
Confidence 3467999999999999999999999999999999999999999999853
No 12
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=2.2e-40 Score=326.60 Aligned_cols=198 Identities=27% Similarity=0.480 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 99 ~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~----~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
+++++|++++++|++ ++|+|||||||+|| ||+.+. +.+++++|+|||++||||++|+++++++||++++++.+.
T Consensus 15 esi~iLrea~~~f~~-~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~ 93 (301)
T PRK05253 15 ESIHILREVAAEFEN-PVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP 93 (301)
T ss_pred HHHHHHHHHHHhCCC-EEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh
Confidence 489999999999975 99999999999766 999885 457999999999999999999999999999999988765
Q ss_pred hHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceee-------cCCCC---
Q 012415 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVF--- 241 (464)
Q Consensus 174 ~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~-------~d~~~--- 241 (464)
.. ...|...+ ..+..+||..+|+.||+++++ ++++|++|+|+||+. .|++..+++ +|+..
T Consensus 94 ~~------i~~g~~~~-~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~-~Ra~e~~fs~r~~~~~wd~~~q~P 165 (301)
T PRK05253 94 EG------IARGINPF-RHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEK-SRAKERIFSFRDEFGQWDPKNQRP 165 (301)
T ss_pred HH------HhcCCCCC-CCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhh-hhccCccccccccccccCccccCh
Confidence 21 13454433 335679999999999999997 567999999999996 999877664 33321
Q ss_pred ------cCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhh---------cC-----------------------
Q 012415 242 ------EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHS---------QG----------------------- 283 (464)
Q Consensus 242 ------~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~---------~G----------------------- 283 (464)
+++ ...+..++++||++||+.|||.|++.++|||||||. .|
T Consensus 166 elw~~~~~~-~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r 244 (301)
T PRK05253 166 ELWNLYNGR-INKGEHIRVFPLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVVEERMVR 244 (301)
T ss_pred hhhhhcccc-ccCCCeEEEeehhhCCHHHHHHHHHHcCCCCCcccccCCCceEeECCeEEecccccCCCCCCcceeeeee
Confidence 111 122458999999999999999999999999999998 45
Q ss_pred CcccCccCCCccCCCC---------------Ccccccc
Q 012415 284 YISIGCEPCTRPVLPG---------------QHEREGR 306 (464)
Q Consensus 284 y~siGC~~CT~~~~~g---------------~~~r~GR 306 (464)
|+|+||++||.+|... ..||+||
T Consensus 245 ~r~~g~~~~t~~~~s~a~~~~~~~~e~~~~~~~er~~r 282 (301)
T PRK05253 245 FRTLGCYPCTGAVESEAATLEEIIAEMLVTRTSERGGR 282 (301)
T ss_pred eeccCCccCCCcccCCCCCHHHHHHHHHhccCcccccc
Confidence 9999999999998765 5678888
No 13
>PRK13794 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=341.55 Aligned_cols=186 Identities=27% Similarity=0.399 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 012415 98 ASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV 175 (464)
Q Consensus 98 ~~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~-~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~ 175 (464)
.+++++|+++++.++.+++|+|||||||+++ +|+.+. +.++.++|+|||.+||||++|+++++++||++++++.+.
T Consensus 233 ~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~-- 310 (479)
T PRK13794 233 RNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE-- 310 (479)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEchH--
Confidence 4689999999999998899999999999875 888776 788999999999999999999999999999999998776
Q ss_pred HHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhcc----CcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCe
Q 012415 176 EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG----LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251 (464)
Q Consensus 176 ~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~----~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~ 251 (464)
.+++.+..+|.| ..+.+|||.++|++|+++++++ ..+|++|+|++||. .|++++.++.++. .++.
T Consensus 311 ~f~~~~~~~G~P---~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~-~Ra~~~~~~~~~~-------~~~~ 379 (479)
T PRK13794 311 EFWEKLEEYGPP---ARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESF-NRSKKPRIWRNPY-------IKKQ 379 (479)
T ss_pred HHHHHHHhcCCC---CCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccH-hHhcCcccccccC-------cCCc
Confidence 455556666654 4567999999999999999975 35899999999997 9999988776542 2467
Q ss_pred EEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccC
Q 012415 252 VKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 296 (464)
Q Consensus 252 ~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~ 296 (464)
++++||++||..|||.||..++|||||||++||.||||++||...
T Consensus 380 ~~~~PI~~Wt~~dVw~Yi~~~~lp~npLY~~G~~riGC~~Cp~~~ 424 (479)
T PRK13794 380 ILAAPILHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMCPAME 424 (479)
T ss_pred EEEechHhCCHHHHHHHHHHcCCCCChHHHCCCCCCccccCcCcC
Confidence 899999999999999999999999999999999999999999863
No 14
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=100.00 E-value=2.1e-40 Score=303.38 Aligned_cols=169 Identities=37% Similarity=0.713 Sum_probs=127.2
Q ss_pred EEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCCcc
Q 012415 115 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193 (464)
Q Consensus 115 i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~ 193 (464)
++|+|||||||+++ ||+.+...+++|+|+|||.+||||++|++++.++||++++++.+.......... .+.+ ...
T Consensus 2 i~vs~SGGKDS~v~l~l~~~~~~~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~---~~~ 77 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLAREAGRKVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPETFEQRFIL-YGWP---SKL 77 (174)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTTCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTSHHHHHHHH-HHHS---TTH
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccccchhhcccc-cccc---chh
Confidence 78999999999776 999998888999999999999999999999999999999998887664433332 2211 122
Q ss_pred hh-hhhhccccchHHHHhccCc--EEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCccCcHHHHHHHHH
Q 012415 194 HQ-ECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLR 270 (464)
Q Consensus 194 ~~-~Cc~~~Kv~Pl~r~l~~~~--~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~ 270 (464)
.+ +||..+|++|++++++++. ++++|+|++||. +|+.....+.+..+ ++.++++||++|+++|||+|++
T Consensus 78 ~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~-~R~~~~~~~~~~~~-------~~~~~~~Pi~~wt~~dV~~yi~ 149 (174)
T PF01507_consen 78 WRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP-RRAKLPMFEFDEDN-------PKIIRVYPIADWTEEDVWDYIK 149 (174)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT-GCCGSSSEEEETTT-------TSEEEE-TTTT--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh-hhhhchhhhccccc-------CCEEEEEehhhCCHHHHHHHHH
Confidence 22 6999999999999998664 999999999997 89988877776532 3589999999999999999999
Q ss_pred hcCCCcchhhhcCCcccCccCCCcc
Q 012415 271 TMDVPINSLHSQGYISIGCEPCTRP 295 (464)
Q Consensus 271 ~~~lp~npLy~~Gy~siGC~~CT~~ 295 (464)
.++||+||||++||.|+||++||+|
T Consensus 150 ~~~l~~~~lY~~g~~r~GC~~C~~~ 174 (174)
T PF01507_consen 150 ANGLPYNPLYDKGYSRVGCWPCTRP 174 (174)
T ss_dssp HHT--B-HHHHCT-SS--BTTTB--
T ss_pred HhcCCCcHHHHCcCCCcCCccCCCC
Confidence 9999999999999999999999986
No 15
>PRK13795 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=336.15 Aligned_cols=187 Identities=26% Similarity=0.417 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012415 98 ASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (464)
Q Consensus 98 ~~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 176 (464)
..++++|++++++++.+++|+|||||||+++ ||+.+...++.++|+|||.+||||++|+++++++||++++++.+.. .
T Consensus 229 ~~ai~~Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~-~ 307 (636)
T PRK13795 229 KEAVNFIRGVAEKYNLPVSVSFSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGD-A 307 (636)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccH-h
Confidence 4689999999998887899999999999766 8998887789999999999999999999999999999999988763 3
Q ss_pred HHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccC----cEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeE
Q 012415 177 VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL----RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV 252 (464)
Q Consensus 177 ~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~----~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~ 252 (464)
++..+...|. +..+.+|||.++|+.|++++++.. .+|++|+|++||. .|++.+.++.++. .++.+
T Consensus 308 f~~~~~~~g~---P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~-~R~~~~~~~~~~~-------~~~~~ 376 (636)
T PRK13795 308 FWRAVEKFGP---PARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESF-SRAKSPRVWRNPW-------VPNQI 376 (636)
T ss_pred HHHhhhccCC---CccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchH-HHhhCcccccCCC-------CCCcE
Confidence 4444444454 455689999999999999999854 3899999999997 9999888765532 24688
Q ss_pred EEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccC
Q 012415 253 KWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 296 (464)
Q Consensus 253 k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~ 296 (464)
+++||++||..|||.||..++|||||||++||.||||++||.+.
T Consensus 377 ~~~PI~~Wt~~dVw~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~ 420 (636)
T PRK13795 377 GASPIQDWTALEVWLYIFWRKLPYNPLYERGFDRIGCWLCPSSS 420 (636)
T ss_pred EEechHhCCHHHHHHHHHHhCCCCChHHHCCCCCCCccCCCCCC
Confidence 99999999999999999999999999999999999999999974
No 16
>PRK08576 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=287.98 Aligned_cols=198 Identities=20% Similarity=0.303 Sum_probs=152.4
Q ss_pred ChhhHHHHHHHhccCCHHHHHHHHHHHcCC-cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHH
Q 012415 84 GEEDFEQFAKELENASPLEIMDRALEKFGN-DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEK 161 (464)
Q Consensus 84 ~~~~~~~l~~~l~~~~~~eil~~a~~~~~~-~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~ 161 (464)
+-.++-++|..+-. .-.+.....+++++. +++|+|||||||+++ |++.+...++.++|+|||.+||+|+++++++++
T Consensus 206 ~~~~~~e~N~~~le-~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~~V~aV~iDTG~e~pet~e~~~~lae 284 (438)
T PRK08576 206 SLEKLIEANREVLE-AFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFGDVTAVYVDTGYEMPLTDEYVEKVAE 284 (438)
T ss_pred CHHHHHHHhHHHHH-HHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhCCCCEEEEeCCCCCChHHHHHHHHHHH
Confidence 44556666665522 112233345666763 699999999999876 888887667999999999999999999999999
Q ss_pred HhCCcEEEEcCChHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccC--cEEEEeeeccCCcccccCCceeecCC
Q 012415 162 HFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDP 239 (464)
Q Consensus 162 ~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~R~~ES~~~R~~~~~~~~d~ 239 (464)
+||+++++. .. .........+.+. ....||..+|+.||.++++++ ++|++|.|++||. .|+..+.+..+.
T Consensus 285 ~LGI~lii~--~v-~~~~~~~~~g~p~----~~~rcCt~lK~~pL~raake~g~~~iatG~R~dES~-~R~~~p~v~~~~ 356 (438)
T PRK08576 285 KLGVDLIRA--GV-DVPMPIEKYGMPT----HSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGESA-RRRLRPPVVERK 356 (438)
T ss_pred HcCCCEEEc--cc-CHHHHhhhcCCCC----cccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHhH-HhhcCCcccccc
Confidence 999998772 11 1222233444332 234577789999999999854 5899999999996 888877554432
Q ss_pred CCcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccC
Q 012415 240 VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 296 (464)
Q Consensus 240 ~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~ 296 (464)
. +.++..+++||++|++.|||.|+..++||+||||++||.||||++||...
T Consensus 357 ~------~~~~v~rI~PL~~Wte~DV~~YI~~~gLP~npLY~~Gy~rIGC~~Cp~~~ 407 (438)
T PRK08576 357 T------NFGKILVVMPIKFWSGAMVQLYILMNGLELNPLYYKGFYRLGCYICPSLR 407 (438)
T ss_pred c------CCCCeEEEeChhhCCHHHHHHHHHHhCCCCCcHHhCCCCccCCcCCcchH
Confidence 1 12468999999999999999999999999999999999999999999754
No 17
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.98 E-value=1.1e-31 Score=244.13 Aligned_cols=167 Identities=39% Similarity=0.680 Sum_probs=136.8
Q ss_pred cEEEEechhHHHHHH-HHHHHcCC---CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGR---PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 189 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~---~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~ 189 (464)
+++|+|||||||+++ ||+.+... ++.++|+|||.++|+|+++++++++.||++++++.+................+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFPL 80 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhccCC
Confidence 388999999999776 88888766 89999999999999999999999999999999987765432211111111224
Q ss_pred CCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCccCcHHHHHH
Q 012415 190 YEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 267 (464)
Q Consensus 190 ~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~ 267 (464)
+....++||..+|..|+.++++ +..++++|+|+||+. .|..+....... ..++..+++||++|+.+|||+
T Consensus 81 ~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~-~r~~~~~~~~~~-------~~~~~~~~~Pl~~w~~~di~~ 152 (173)
T cd01713 81 PSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESA-RRALLPVVWTDD-------GKGGILKVNPLLDWTYEDVWA 152 (173)
T ss_pred ccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccch-hhhhCccccccC-------CCCCcEEEcchhcCCHHHHHH
Confidence 4567889999999999999998 567999999999996 777766541111 224688999999999999999
Q ss_pred HHHhcCCCcchhhhcCCcccC
Q 012415 268 FLRTMDVPINSLHSQGYISIG 288 (464)
Q Consensus 268 yi~~~~lp~npLy~~Gy~siG 288 (464)
|++.+++|+||||++||+|+|
T Consensus 153 ~~~~~~l~~~~ly~~g~~~~g 173 (173)
T cd01713 153 YLARHGLPYNPLYDQGYRSIG 173 (173)
T ss_pred HHHHcCCCCCHHHHcCCCCCC
Confidence 999999999999999999997
No 18
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=99.97 E-value=4.6e-30 Score=263.86 Aligned_cols=191 Identities=17% Similarity=0.266 Sum_probs=142.2
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc---------CCCeEEEEEeCCCCcHHHHHHHHHHH-------HHhC
Q 012415 102 EIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVE-------KHFG 164 (464)
Q Consensus 102 eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~---------~~~i~vv~~DTg~~fpeT~~~~~~~~-------~~~g 164 (464)
+-|+.++...+.+++|+|||||||+++ +|+.++ .+.+.|+|.|||++||+|++|++++. +++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 446666666667789999999999766 666552 14689999999999999999997654 5556
Q ss_pred CcE--EEEcCChH-HHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccC------cEEEEeeeccCCcccccCCce-
Q 012415 165 IRI--EYMFPDAV-EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL------RAWITGQRKDQSPGTRSEIPV- 234 (464)
Q Consensus 165 l~i--~~~~p~~~-~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~------~~~itG~R~~ES~~~R~~~~~- 234 (464)
+++ +++.|... .++..+.++|.|. +....+|||..+|+.|+++++++. .++++|+|++||. +|++...
T Consensus 83 lpi~~~~v~P~~~~~Fwv~liGrG~P~-P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~-~RA~~m~k 160 (447)
T TIGR03183 83 LPIEPHRLTPEIKDTFWVNLIGKGYPA-PRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQ-ARAAVMEK 160 (447)
T ss_pred CCeEEEecCCCcchHHHHHHhcCCCCC-CCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHH-HHHhhhhh
Confidence 665 56677643 4555555667653 456789999999999999999743 5899999999997 8888521
Q ss_pred eecCC---CCcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCc-------chhhh------------------cCCcc
Q 012415 235 VQVDP---VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI-------NSLHS------------------QGYIS 286 (464)
Q Consensus 235 ~~~d~---~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~-------npLy~------------------~Gy~s 286 (464)
.+... .+ ......++.+.++||.+|+..|||.||..+++|+ ..||. +|..|
T Consensus 161 ~e~~~~r~~l-~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~v~d~~~~sCG~sR 239 (447)
T TIGR03183 161 HESGSLRDRL-SRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPLVVDTSTPSCGDSR 239 (447)
T ss_pred hccccccccc-cccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCceeeCCCCCCCCCCC
Confidence 11110 01 0111234688999999999999999999999987 45564 37889
Q ss_pred cCccCCCcc
Q 012415 287 IGCEPCTRP 295 (464)
Q Consensus 287 iGC~~CT~~ 295 (464)
.|||.||.-
T Consensus 240 fGCw~Ct~v 248 (447)
T TIGR03183 240 FGCWVCTMV 248 (447)
T ss_pred CCeeeCcCc
Confidence 999999964
No 19
>PRK06850 hypothetical protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=261.12 Aligned_cols=194 Identities=19% Similarity=0.283 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc---------CCCeEEEEEeCCCCcHHHHHHHHHHHH-------H
Q 012415 100 PLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVEK-------H 162 (464)
Q Consensus 100 ~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~---------~~~i~vv~~DTg~~fpeT~~~~~~~~~-------~ 162 (464)
.++-|+..+.....+++|+|||||||+++ +|+.+. .+++.|+|.|||.+||+|++|++++.+ +
T Consensus 22 ~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~ 101 (507)
T PRK06850 22 LIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKK 101 (507)
T ss_pred HHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554455689999999999765 666542 235889999999999999999887754 5
Q ss_pred hCCcE--EEEcCChH-HHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccC------cEEEEeeeccCCcccccCC-
Q 012415 163 FGIRI--EYMFPDAV-EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL------RAWITGQRKDQSPGTRSEI- 232 (464)
Q Consensus 163 ~gl~i--~~~~p~~~-~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~------~~~itG~R~~ES~~~R~~~- 232 (464)
+|++| +++.|... .++..+.++|.|. |....+|||..+|+.|+++++++. .++++|+|++||. +|++.
T Consensus 102 ~glpi~~~~v~P~~~~sFwv~liGrG~P~-Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~-~RA~~m 179 (507)
T PRK06850 102 QGLPITPHKLTPKINDTFWVNLIGKGYPA-PRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA-ARAQVM 179 (507)
T ss_pred cCCceEEEeeCCCcchhHHHHHhcCCCCC-CCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH-HHHhhh
Confidence 68777 45678753 4555666677653 556889999999999999999632 5899999999997 88875
Q ss_pred ceeecCCCCcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCc-------chhhhc------------------CCccc
Q 012415 233 PVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI-------NSLHSQ------------------GYISI 287 (464)
Q Consensus 233 ~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~-------npLy~~------------------Gy~si 287 (464)
...+.+...-.+....++.+.++||.+|+..|||.||..+++|+ +.||.. |-.|.
T Consensus 180 ~~~~~~~~rl~~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~~~~~L~~lY~~a~~~~eCp~v~d~~~~sCG~sRf 259 (507)
T PRK06850 180 AKHEIEGSRLSRHTTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGGSNRDLFTLYRGASADGECPLVVDTSTPSCGNSRF 259 (507)
T ss_pred hhhcccCcceeeccCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhccCCCCCCeeeCCCCCCCCCCCC
Confidence 33332211111111235678999999999999999999998888 667753 55799
Q ss_pred CccCCCcc
Q 012415 288 GCEPCTRP 295 (464)
Q Consensus 288 GC~~CT~~ 295 (464)
|||.||.-
T Consensus 260 GCwvCt~v 267 (507)
T PRK06850 260 GCWVCTVV 267 (507)
T ss_pred Cccccccc
Confidence 99999964
No 20
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.87 E-value=2e-21 Score=165.44 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=95.2
Q ss_pred CCCCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012415 350 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 429 (464)
Q Consensus 350 ~~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~ 429 (464)
..++|++|++++|++++...+.++++||+||||||++|+.+.|.|+++++.+++ .+.|++|||+.+ .++|.++|+|.+
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~-~~l~~~~~~I~~ 84 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWP-QGKCRKQKHFFY 84 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC-hHHHHHhcCCcc
Confidence 347899999999999854456899999999999999999999999999999987 699999999999 888834899999
Q ss_pred CCEEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 430 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 430 ~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
+||+++|++|+. +..|.| .++.+.|..|+
T Consensus 85 ~PTl~lf~~g~~-~~~y~G-~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRG-PIEYKG-PMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCcc-ceEEeC-CCCHHHHHhhC
Confidence 999999998875 688887 79999999874
No 21
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=99.86 E-value=7.6e-22 Score=190.29 Aligned_cols=206 Identities=21% Similarity=0.246 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHH----cCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcE----EE
Q 012415 100 PLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHL----TGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRI----EY 169 (464)
Q Consensus 100 ~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~----~~~-~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i----~~ 169 (464)
++++|++++..|+. |+|+|||||||.|+ ||+.+ .++ +|.|+|+|-...|..|.+||.++...|.-.+ .+
T Consensus 16 ~~eRl~~if~~f~~-VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~~~~~dv~~~~yWv 94 (407)
T COG3969 16 AIERLEWIFNTFPR-VCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMRESYHDVIETFYWV 94 (407)
T ss_pred HHHHHHHHHhcCCe-EEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHHhcccCccccceEE
Confidence 68999999999987 99999999999765 76654 455 6999999999999999999999999853222 22
Q ss_pred EcCChHH-----HHHHH--HhcCC-----CCCCC-----cchhhhhhccc------cchHHHHhccC---cEEEEeeecc
Q 012415 170 MFPDAVE-----VQALV--RSKGL-----FSFYE-----DGHQECCRVRK------VRPLRRALKGL---RAWITGQRKD 223 (464)
Q Consensus 170 ~~p~~~~-----~~~~~--~~~g~-----~~~~~-----~~~~~Cc~~~K------v~Pl~r~l~~~---~~~itG~R~~ 223 (464)
.-|.... .+-.+ -+.|. -.+|+ +....|....+ +.-+.+.+.+. .+.++|+|+|
T Consensus 95 cLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~LvGiRad 174 (407)
T COG3969 95 CLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLVGIRAD 174 (407)
T ss_pred EeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhccCCceEEEEeecch
Confidence 2232110 00000 00000 00000 01111111111 22233334322 5899999999
Q ss_pred CCcccccCCce----e-ecC-CCCcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccCC
Q 012415 224 QSPGTRSEIPV----V-QVD-PVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 297 (464)
Q Consensus 224 ES~~~R~~~~~----~-~~d-~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~~ 297 (464)
||. +|-+.-. . ..+ ..+..++-..|.++.+.||.||..+|||.+..+++.+||||||+.|+- |-.+--..|.
T Consensus 175 ESl-NRf~ai~~~~k~~~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN~LYDlmYqA-Gvp~~~MRVc 252 (407)
T COG3969 175 ESL-NRFNAIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLYDLMYQA-GVPLRQMRVC 252 (407)
T ss_pred hhH-HHHHHHHHhhhcccCCCCCceeeecCCCceEEEEecccchHHHHHHHHHhcCCcccHHHHHHHHc-CCChhhcccc
Confidence 997 7743211 1 111 123333323456999999999999999999999999999999998875 5544444333
Q ss_pred -C-CCcccccccc
Q 012415 298 -P-GQHEREGRWW 308 (464)
Q Consensus 298 -~-g~~~r~GRw~ 308 (464)
| |.+.|.|-|.
T Consensus 253 ~Pfgd~qr~gL~L 265 (407)
T COG3969 253 EPFGDEQRKGLWL 265 (407)
T ss_pred CCCChhhhcccch
Confidence 3 6778999874
No 22
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.84 E-value=2.8e-20 Score=155.19 Aligned_cols=100 Identities=27% Similarity=0.634 Sum_probs=91.4
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
+|++|+.++|++.+. .+++++|+|||+||++|+.+.|.|+++++.+++ .+.|++|||+++ +++| ++|+|.++||
T Consensus 2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~Pt 75 (101)
T cd03003 2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-RMLC-RSQGVNSYPS 75 (101)
T ss_pred CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-HHHH-HHcCCCccCE
Confidence 688999999999886 679999999999999999999999999999987 699999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
+++|++|+. ...|.| .++.++|.+|.
T Consensus 76 ~~~~~~g~~-~~~~~G-~~~~~~l~~f~ 101 (101)
T cd03003 76 LYVFPSGMN-PEKYYG-DRSKESLVKFA 101 (101)
T ss_pred EEEEcCCCC-cccCCC-CCCHHHHHhhC
Confidence 999998874 567777 79999998873
No 23
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.83 E-value=6.7e-20 Score=154.91 Aligned_cols=102 Identities=27% Similarity=0.544 Sum_probs=92.0
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-----CCeEEEEEEcCCCcHHHHHHcCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-----NGVKVGKFRADGDQKEYAKQKLQL 427 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-----~~v~~~~Id~d~~~~~l~~~~~~I 427 (464)
+|++|++++|++.+. .++++||.||||||++|+.+.|.|+++++.+++ .++.|++|||+.+ ++++ ++|+|
T Consensus 2 ~v~~l~~~~f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~-~~~~v 76 (108)
T cd02996 2 EIVSLTSGNIDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIA-DRYRI 76 (108)
T ss_pred ceEEcCHhhHHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHH-HhCCC
Confidence 688999999999876 678999999999999999999999999988753 1589999999999 9999 99999
Q ss_pred CCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 428 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 428 ~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
+++||+++|++|+.....|.| .++.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g-~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRG-QRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCC-CCCHHHHHhhC
Confidence 999999999999854678887 79999999986
No 24
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.83 E-value=6.5e-20 Score=153.69 Aligned_cols=102 Identities=34% Similarity=0.661 Sum_probs=91.6
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
++++++.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++++.+ .+.|++||++.+ ++++ ++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~i~~~Pt 76 (104)
T cd03004 2 SVITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKY-ESLC-QQANIRAYPT 76 (104)
T ss_pred cceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCch-HHHH-HHcCCCcccE
Confidence 578899999999875 3567999999999999999999999999999976 799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCC-HHHHHHHH
Q 012415 433 ILFFPKHSSKPIKYPSERRD-VDSLMAFV 460 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~-~e~L~~fI 460 (464)
+++|++|+.....|.| ..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G-~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNG-WHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccC-CCCCHHHHHhhC
Confidence 9999998555788888 565 99999885
No 25
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.3e-20 Score=159.93 Aligned_cols=104 Identities=20% Similarity=0.362 Sum_probs=93.2
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
.+..++..+|++.+. +.+.||||+|||+||+||+.+.|.+++++.+|.+ .++|++||+|++ .+++ .+|+|..+||
T Consensus 44 ~~~~~s~~~~~~~Vi--~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~-~ela-~~Y~I~avPt 118 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI--NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEH-PELA-EDYEISAVPT 118 (150)
T ss_pred cccccCHHHHHHHHH--ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccc-cchH-hhcceeeeeE
Confidence 455678889998764 6899999999999999999999999999999988 899999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+++|++|++ ...+.| ..+.+.|.++|+++
T Consensus 119 vlvfknGe~-~d~~vG-~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 119 VLVFKNGEK-VDRFVG-AVPKEQLRSLIKKF 147 (150)
T ss_pred EEEEECCEE-eeeecc-cCCHHHHHHHHHHH
Confidence 999999994 345555 79999999999975
No 26
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=1.6e-19 Score=152.95 Aligned_cols=108 Identities=68% Similarity=1.119 Sum_probs=94.9
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
.|++++.++|+.++...++++++||.||++||++|+.+.|.|+++++.+++.++.|+.||++.++..++.+.|+|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 58899999999998655578999999999999999999999999999998756999999999843788833599999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
+++|++|......|.|+.++.++|++||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999888766899998558999999986
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.81 E-value=3.1e-19 Score=148.77 Aligned_cols=100 Identities=26% Similarity=0.557 Sum_probs=89.8
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
+|++|+.++|+++++ +. +||+|||+||++|+.+.|.|+++++.+++.++.|+++|++.+ +.++ ++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~~~----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~-~~~~i~~~Pt 74 (101)
T cd02994 2 NVVELTDSNWTLVLE----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLS-GRFFVTALPT 74 (101)
T ss_pred ceEEcChhhHHHHhC----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHH-HHcCCcccCE
Confidence 688999999999764 33 899999999999999999999999988755699999999998 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
+++|++|+ ...|.| .++.++|.+||++
T Consensus 75 ~~~~~~g~--~~~~~G-~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGV--FRRYQG-PRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCC--EEEecC-CCCHHHHHHHHhC
Confidence 99999887 577877 7999999999974
No 28
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.80 E-value=6.2e-19 Score=146.50 Aligned_cols=102 Identities=30% Similarity=0.618 Sum_probs=93.7
Q ss_pred eeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEE
Q 012415 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 433 (464)
Q Consensus 354 v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi 433 (464)
|..+++++|++.+. +.++++||+||++||++|+.+.|.|+++++.+.+ ++.|+.||++++ ++++ ++|+|.++||+
T Consensus 1 v~~lt~~~f~~~i~--~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFIN--ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELC-KKYGVKSVPTI 75 (103)
T ss_dssp SEEESTTTHHHHHT--TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHH-HHTTCSSSSEE
T ss_pred CEECCHHHHHHHHH--ccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhh-hccCCCCCCEE
Confidence 56889999999987 2489999999999999999999999999999997 799999999999 9999 99999999999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 434 LFFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 434 ~lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
++|++|+. ...|.| .++.++|.+||++
T Consensus 76 ~~~~~g~~-~~~~~g-~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 76 IFFKNGKE-VKRYNG-PRNAESLIEFIEK 102 (103)
T ss_dssp EEEETTEE-EEEEES-SSSHHHHHHHHHH
T ss_pred EEEECCcE-EEEEEC-CCCHHHHHHHHHc
Confidence 99999985 447777 6999999999986
No 29
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.80 E-value=4e-19 Score=152.45 Aligned_cols=104 Identities=22% Similarity=0.295 Sum_probs=93.5
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChh--HH--hhHHHHHHHHHHh--cCCCeEEEEEEcCCCcHHHHHHcC
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQF--CQ--AMEGSYVELADKL--AGNGVKVGKFRADGDQKEYAKQKL 425 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~--C~--~~~p~~~~la~~~--~~~~v~~~~Id~d~~~~~l~~~~~ 425 (464)
..|..||++||++.+. +...++|++||++||++ |+ .+.|.+.+++.++ .+ ++.|++||++++ ++++ ++|
T Consensus 9 ~~v~~lt~~nF~~~v~--~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~-~~La-~~~ 83 (120)
T cd03065 9 DRVIDLNEKNYKQVLK--KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD-AKVA-KKL 83 (120)
T ss_pred cceeeCChhhHHHHHH--hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC-HHHH-HHc
Confidence 5799999999999876 45678999999999987 99 8899999999998 65 799999999999 9999 999
Q ss_pred CCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 426 QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 426 ~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+|.++||+++|++|+ .+.|.| .++.+.|++||+++
T Consensus 84 ~I~~iPTl~lfk~G~--~v~~~G-~~~~~~l~~~l~~~ 118 (120)
T cd03065 84 GLDEEDSIYVFKDDE--VIEYDG-EFAADTLVEFLLDL 118 (120)
T ss_pred CCccccEEEEEECCE--EEEeeC-CCCHHHHHHHHHHH
Confidence 999999999999998 566877 79999999999976
No 30
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.79 E-value=5.3e-19 Score=150.36 Aligned_cols=105 Identities=23% Similarity=0.355 Sum_probs=89.6
Q ss_pred eecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012415 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 355 ~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~ 434 (464)
..++.++|++.+...+.++++||+||||||++|+.+.|.|+++++.+.+.++.|++||++.+ +.++ ++|+|.++||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~-~~~~V~~~Pt~~ 84 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLA-RKLGAHSVPAIV 84 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHH-HHcCCccCCEEE
Confidence 34577888765532346899999999999999999999999999999865699999999999 8999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 435 FFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 435 lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+|++|+ ...+..|..+.+.|.+||++|
T Consensus 85 i~~~g~--~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 85 GIINGQ--VTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEECCE--EEEEecCCCCHHHHHHHHhcC
Confidence 999887 454443479999999999875
No 31
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.78 E-value=1.6e-18 Score=146.29 Aligned_cols=103 Identities=25% Similarity=0.497 Sum_probs=92.1
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC--CcHHHHHHcCCCCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--DQKEYAKQKLQLGSF 430 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~--~~~~l~~~~~~I~~~ 430 (464)
.|++|++++|++.+. +.++++||+|||+||++|+.+.|.|+++++.+.+ .+.|+.+|++. + .+++ ++|+|.++
T Consensus 1 ~v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~-~~~~-~~~~i~~~ 75 (109)
T cd03002 1 PVYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKN-KPLC-GKYGVQGF 75 (109)
T ss_pred CeEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcccc-HHHH-HHcCCCcC
Confidence 478899999999885 4578899999999999999999999999999986 79999999998 6 8999 89999999
Q ss_pred CEEEEEeCCC----CCeeecCCCCCCHHHHHHHHH
Q 012415 431 PTILFFPKHS----SKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 431 PTi~lf~~g~----~~~~~y~gg~~~~e~L~~fI~ 461 (464)
||+++|++|+ .....|.| .++.++|.+||.
T Consensus 76 Pt~~~~~~~~~~~~~~~~~~~G-~~~~~~l~~fi~ 109 (109)
T cd03002 76 PTLKVFRPPKKASKHAVEDYNG-ERSAKAIVDFVL 109 (109)
T ss_pred CEEEEEeCCCcccccccccccC-ccCHHHHHHHhC
Confidence 9999999886 23678887 799999999983
No 32
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.7e-18 Score=166.17 Aligned_cols=107 Identities=22% Similarity=0.427 Sum_probs=98.3
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
.+|.++|..||+..+...+..+||||+||+|||++|+.+.|.+++++..|+| .+.+++||||.+ +.++ ..|+|+++|
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~-p~vA-aqfgiqsIP 99 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAE-PMVA-AQFGVQSIP 99 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcc-hhHH-HHhCcCcCC
Confidence 3599999999999988777788999999999999999999999999999999 899999999999 9999 999999999
Q ss_pred EEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 432 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 432 Ti~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
|+++|++|+. ...|.| ....+.|.+||+++
T Consensus 100 tV~af~dGqp-VdgF~G-~qPesqlr~~ld~~ 129 (304)
T COG3118 100 TVYAFKDGQP-VDGFQG-AQPESQLRQFLDKV 129 (304)
T ss_pred eEEEeeCCcC-ccccCC-CCcHHHHHHHHHHh
Confidence 9999999994 455665 78899999999875
No 33
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=5e-18 Score=141.47 Aligned_cols=102 Identities=29% Similarity=0.593 Sum_probs=92.1
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
.|.++++++|++.+. +.+++++|+||++||++|+.+.|.|.++++.+.+ .+.|+.+|++.+ ++++ ++|+|+++||
T Consensus 1 ~v~~l~~~~~~~~i~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~-~~~~-~~~~i~~~P~ 75 (103)
T cd03001 1 DVVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH-QSLA-QQYGVRGFPT 75 (103)
T ss_pred CeEEcCHHhHHHHHh--cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch-HHHH-HHCCCCccCE
Confidence 367899999999875 3466799999999999999999999999999987 799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
+++|++|+.....|.| .++.++|.+|+
T Consensus 76 ~~~~~~~~~~~~~~~g-~~~~~~l~~~~ 102 (103)
T cd03001 76 IKVFGAGKNSPQDYQG-GRTAKAIVSAA 102 (103)
T ss_pred EEEECCCCcceeecCC-CCCHHHHHHHh
Confidence 9999988555888988 69999999996
No 34
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.76 E-value=6.3e-18 Score=160.37 Aligned_cols=107 Identities=32% Similarity=0.643 Sum_probs=95.7
Q ss_pred CCCeeecCcchHHHHHhhc--CCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC
Q 012415 351 SQNLVTLNRTGMENLARLD--HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 428 (464)
Q Consensus 351 ~~~v~~L~~~~f~~~i~~~--~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~ 428 (464)
...|++|++++|++++... ..+++++|+||||||++|+.+.|.|+++++.+++ .+.|+++|++.+ ++++ ++|+|.
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~-~~l~-~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA-LNLA-KRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc-HHHH-HHcCCC
Confidence 3579999999999987522 1358999999999999999999999999999987 699999999999 9999 999999
Q ss_pred CCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 429 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 429 ~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
++||+++|++|+ .+.|.+|.++.++|.+|+.+
T Consensus 106 ~~PTl~~f~~G~--~v~~~~G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 106 GYPTLLLFDKGK--MYQYEGGDRSTEKLAAFALG 137 (224)
T ss_pred cCCEEEEEECCE--EEEeeCCCCCHHHHHHHHHH
Confidence 999999999987 67777668999999999875
No 35
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.76 E-value=3.8e-18 Score=142.39 Aligned_cols=92 Identities=24% Similarity=0.440 Sum_probs=81.0
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCcHHHHHHcCCCCCCCEEEEEeCC
Q 012415 361 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQLGSFPTILFFPKH 439 (464)
Q Consensus 361 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d-~~~~~l~~~~~~I~~~PTi~lf~~g 439 (464)
++.+++. ..+++++||+|||+||++|+.+.|.|+++++.+++ +.+++||++ .+ ++++ ++|+|.++||+++|++|
T Consensus 8 ~~~~~~~-~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~-~~l~-~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 8 IALDLMA-FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIK-PSLL-SRYGVVGFPTILLFNST 82 (100)
T ss_pred HHHHHHH-hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCC-HHHH-HhcCCeecCEEEEEcCC
Confidence 4445544 45799999999999999999999999999999975 889999999 67 8999 99999999999999988
Q ss_pred CCCeeecCCCCCCHHHHHHHH
Q 012415 440 SSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 440 ~~~~~~y~gg~~~~e~L~~fI 460 (464)
. ...|.| .++.++|.+||
T Consensus 83 ~--~~~~~G-~~~~~~l~~f~ 100 (100)
T cd02999 83 P--RVRYNG-TRTLDSLAAFY 100 (100)
T ss_pred c--eeEecC-CCCHHHHHhhC
Confidence 3 788888 69999999986
No 36
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.76 E-value=6.5e-18 Score=140.53 Aligned_cols=99 Identities=28% Similarity=0.600 Sum_probs=88.4
Q ss_pred eeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 354 v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
+++|++++|++.+. . .+++|+|||+||++|+.+.|.|+++++++++ .++.|+++|++.+ .+++ ++|+|.++|
T Consensus 2 ~~~l~~~~f~~~~~---~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~v~~~P 75 (102)
T cd03005 2 VLELTEDNFDHHIA---E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELC-SEFQVRGYP 75 (102)
T ss_pred eeECCHHHHHHHhh---c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhH-hhcCCCcCC
Confidence 67899999999885 3 3599999999999999999999999999976 3699999999999 8999 999999999
Q ss_pred EEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 432 TILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 432 Ti~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
|+++|++|+. ...|.| .++.++|.+||
T Consensus 76 t~~~~~~g~~-~~~~~G-~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEK-VDKYKG-TRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCe-eeEeeC-CCCHHHHHhhC
Confidence 9999998873 567877 79999999885
No 37
>PHA02278 thioredoxin-like protein
Probab=99.75 E-value=8.2e-18 Score=140.85 Aligned_cols=94 Identities=10% Similarity=0.159 Sum_probs=78.6
Q ss_pred cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEE
Q 012415 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~I~~~PTi~l 435 (464)
.++|++.+. .++++||+|||+||++|+.|.|.++++++.+.. .+.|++||+|.++ ++++ ++|+|.++||+++
T Consensus 4 ~~~~~~~i~---~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~-~~~~I~~iPT~i~ 78 (103)
T PHA02278 4 LVDLNTAIR---QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAV-KLFDIMSTPVLIG 78 (103)
T ss_pred HHHHHHHHh---CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHH-HHCCCccccEEEE
Confidence 457777775 789999999999999999999999999988655 5789999999862 5899 9999999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHH
Q 012415 436 FPKHSSKPIKYPSERRDVDSLMAF 459 (464)
Q Consensus 436 f~~g~~~~~~y~gg~~~~e~L~~f 459 (464)
|++|+ .+....|..+.++|.++
T Consensus 79 fk~G~--~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQ--LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECCE--EEEEEeCCCCHHHHHhh
Confidence 99998 44443336788887765
No 38
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.75 E-value=1.2e-17 Score=137.84 Aligned_cols=96 Identities=18% Similarity=0.327 Sum_probs=83.4
Q ss_pred chHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCC
Q 012415 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 439 (464)
Q Consensus 360 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g 439 (464)
++|++.+. .+.++++||+||++||++|+.+.|.++++++.+.+ .+.|++||++.+ ++++ ++|+|.++||+++|++|
T Consensus 1 ~~f~~~i~-~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~l~-~~~~i~~~Pt~~~~~~g 76 (96)
T cd02956 1 QNFQQVLQ-ESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQ-PQIA-QQFGVQALPTVYLFAAG 76 (96)
T ss_pred CChHHHHH-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCC-HHHH-HHcCCCCCCEEEEEeCC
Confidence 36777664 23478999999999999999999999999999987 699999999999 9999 99999999999999988
Q ss_pred CCCeeecCCCCCCHHHHHHHHH
Q 012415 440 SSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 440 ~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
+. ...+.| ..+.++|..||+
T Consensus 77 ~~-~~~~~g-~~~~~~l~~~l~ 96 (96)
T cd02956 77 QP-VDGFQG-AQPEEQLRQMLD 96 (96)
T ss_pred EE-eeeecC-CCCHHHHHHHhC
Confidence 73 345666 789999999874
No 39
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.75 E-value=1.1e-17 Score=139.99 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=84.8
Q ss_pred cCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012415 357 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 436 (464)
Q Consensus 357 L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf 436 (464)
-+.++|++++. .+++++|+|||+||++|+.+.|.|+++++.+++..+.|+.+|+| + .+++ ++|+|+++||+++|
T Consensus 5 ~~~~~~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~~~-~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-IDTL-KRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HHHH-HHcCCCcCcEEEEE
Confidence 36788888875 78999999999999999999999999999998645899999999 6 7889 99999999999999
Q ss_pred eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 437 PKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 437 ~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
++|+ .+....| .+.+.|.++|++|
T Consensus 79 ~~g~--~~~~~~G-~~~~~~~~~i~~~ 102 (102)
T cd02948 79 KNGE--LVAVIRG-ANAPLLNKTITEL 102 (102)
T ss_pred ECCE--EEEEEec-CChHHHHHHHhhC
Confidence 9988 4444443 5889999999875
No 40
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.75 E-value=1.4e-17 Score=138.82 Aligned_cols=102 Identities=34% Similarity=0.716 Sum_probs=90.1
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
+|.+|++++|++.+. +.+++++|+||++||++|+.+.|.|+++++.+++ .++.|+++|++.+ +++ ..+++.++|
T Consensus 1 ~v~~l~~~~f~~~i~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~-~~~~~~~~P 75 (104)
T cd02995 1 PVKVVVGKNFDEVVL--DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVP-SEFVVDGFP 75 (104)
T ss_pred CeEEEchhhhHHHHh--CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhh-hhccCCCCC
Confidence 478899999999875 3468999999999999999999999999999977 4699999999987 577 789999999
Q ss_pred EEEEEeCCC-CCeeecCCCCCCHHHHHHHH
Q 012415 432 TILFFPKHS-SKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 432 Ti~lf~~g~-~~~~~y~gg~~~~e~L~~fI 460 (464)
|+++|++|+ .....|.| ..+.++|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g-~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEG-DRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccC-CcCHHHHHhhC
Confidence 999999887 34678887 79999999986
No 41
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.74 E-value=5.6e-18 Score=143.36 Aligned_cols=79 Identities=13% Similarity=0.260 Sum_probs=71.5
Q ss_pred cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012415 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 438 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~ 438 (464)
.++|++.+. .+.++++||+|||+||++|+.|.|.|+++++++++ .+.|++||+|++ ++++ ++|+|.++||+++|++
T Consensus 2 ~~~~~~~i~-~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~-~~la-~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 2 GWAVDQAIL-SEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEV-PDFN-KMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHHh-ccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCC-HHHH-HHcCCCCCCEEEEEEC
Confidence 457777775 33578999999999999999999999999999987 589999999999 9999 9999999999999999
Q ss_pred CCC
Q 012415 439 HSS 441 (464)
Q Consensus 439 g~~ 441 (464)
|+.
T Consensus 78 G~~ 80 (114)
T cd02954 78 NKH 80 (114)
T ss_pred CEE
Confidence 985
No 42
>PRK09381 trxA thioredoxin; Provisional
Probab=99.74 E-value=2.9e-17 Score=138.81 Aligned_cols=106 Identities=24% Similarity=0.397 Sum_probs=92.7
Q ss_pred CCCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012415 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 430 (464)
Q Consensus 351 ~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~ 430 (464)
+..|+++++++|++.+. +.+++++|+||++||++|+.+.|.|+++++.+.+ ++.|+.+|++.+ +.++ ++|+|.++
T Consensus 2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~ 76 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGI 76 (109)
T ss_pred CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC-hhHH-HhCCCCcC
Confidence 45789999999998653 3688999999999999999999999999999987 699999999999 8999 89999999
Q ss_pred CEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 431 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 431 PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
||+++|++|+. ...+.| ..+.++|.++|++.
T Consensus 77 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~i~~~ 107 (109)
T PRK09381 77 PTLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN 107 (109)
T ss_pred CEEEEEeCCeE-EEEecC-CCCHHHHHHHHHHh
Confidence 99999998873 334555 68899999999763
No 43
>PRK10996 thioredoxin 2; Provisional
Probab=99.73 E-value=3.9e-17 Score=144.53 Aligned_cols=103 Identities=17% Similarity=0.423 Sum_probs=92.6
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
.+++++.++|+++++ .+++++|+||++||++|+.+.|.|.++++++.+ ++.|+++|++.+ ++++ ++|+|.++||
T Consensus 36 ~~i~~~~~~~~~~i~---~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~V~~~Pt 109 (139)
T PRK10996 36 EVINATGETLDKLLQ---DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAE-RELS-ARFRIRSIPT 109 (139)
T ss_pred CCEEcCHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC-HHHH-HhcCCCccCE
Confidence 577789999999876 689999999999999999999999999999887 799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+++|++|+. ...+.| ..+.+.|.+||+++
T Consensus 110 lii~~~G~~-v~~~~G-~~~~e~l~~~l~~~ 138 (139)
T PRK10996 110 IMIFKNGQV-VDMLNG-AVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEECCEE-EEEEcC-CCCHHHHHHHHHHh
Confidence 999998873 444555 78999999999976
No 44
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=3.7e-17 Score=136.41 Aligned_cols=103 Identities=37% Similarity=0.748 Sum_probs=91.1
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCC-CcHHHHHHcCCCCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG-DQKEYAKQKLQLGSF 430 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Id~d~-~~~~l~~~~~~I~~~ 430 (464)
+|.+|++++|++.+. +.+++++|+||++||++|+.+.|.|.++++.++. .++.|+.+|++. + ++++ ++|+|.++
T Consensus 1 ~~~~l~~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~-~~~~i~~~ 76 (105)
T cd02998 1 NVVELTDSNFDKVVG--DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-KDLA-KKYGVSGF 76 (105)
T ss_pred CeEEcchhcHHHHhc--CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-hhhH-HhCCCCCc
Confidence 367889999999764 3466999999999999999999999999999973 369999999999 7 8999 99999999
Q ss_pred CEEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 431 PTILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 431 PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
||+++|.+|+.....|.| .++.++|.+||
T Consensus 77 P~~~~~~~~~~~~~~~~g-~~~~~~l~~~i 105 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEG-GRDLEDLVKFV 105 (105)
T ss_pred CEEEEEeCCCCCccccCC-ccCHHHHHhhC
Confidence 999999988655778887 69999999885
No 45
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.73 E-value=4.1e-17 Score=136.10 Aligned_cols=101 Identities=21% Similarity=0.511 Sum_probs=89.3
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCC--CcHHHHHHcCCCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG--DQKEYAKQKLQLGS 429 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Id~d~--~~~~l~~~~~~I~~ 429 (464)
+|.++++.+|++.++ .+++++|+||++||++|+.+.|.+.++++.+.+ ..+.++.+|++. + ..++ ++|+|++
T Consensus 1 ~~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~-~~~~i~~ 75 (104)
T cd02997 1 DVVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALK-EEYNVKG 75 (104)
T ss_pred CeEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHH-HhCCCcc
Confidence 367889999999886 677999999999999999999999999999873 368999999998 6 8999 9999999
Q ss_pred CCEEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 430 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 430 ~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
+||+++|++|+. ...|.| ..+.++|.+||
T Consensus 76 ~Pt~~~~~~g~~-~~~~~g-~~~~~~l~~~l 104 (104)
T cd02997 76 FPTFKYFENGKF-VEKYEG-ERTAEDIIEFM 104 (104)
T ss_pred ccEEEEEeCCCe-eEEeCC-CCCHHHHHhhC
Confidence 999999998874 567776 68999999885
No 46
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.73 E-value=4.3e-17 Score=136.74 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=82.4
Q ss_pred CcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--HHHHHHcCCCCCCCEEEE
Q 012415 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 358 ~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~--~~l~~~~~~I~~~PTi~l 435 (464)
+.++|++.+. ...++++||+|||+||++|+.+.|.|+++++.+. ++.|++||++++. .+++ ++|+|.++||++|
T Consensus 2 ~~~~~~~~i~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~-~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALK-KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELC-RREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHH-HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHH-HHcCCCcCCEEEE
Confidence 3567888875 3358999999999999999999999999999993 6999999999872 3789 8999999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 436 FPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 436 f~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
|++|+. ...+.| .+.++|.+.|..
T Consensus 78 ~~~G~~-v~~~~G--~~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEK-IHEEEG--IGPDELIGDVLY 101 (103)
T ss_pred EeCCeE-EEEEeC--CCHHHHHHHHHh
Confidence 998874 566666 577888877754
No 47
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.3e-17 Score=171.98 Aligned_cols=106 Identities=25% Similarity=0.542 Sum_probs=99.3
Q ss_pred CCCCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCcHHHHHHcCCC
Q 012415 350 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEYAKQKLQL 427 (464)
Q Consensus 350 ~~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~Id~d~~~~~l~~~~~~I 427 (464)
.+..|+.|+.++|++.+. .+..+||.||||||+||+.+.|.|++.+..++.. .+.+++|||..+ .++| .+|+|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~---~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~-~~y~v 97 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETIN---GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLA-SKYEV 97 (493)
T ss_pred cccceEEEecccHHHHhc---cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhH-hhhcC
Confidence 346899999999999997 8899999999999999999999999999999873 799999999999 9999 99999
Q ss_pred CCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 428 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 428 ~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
++|||+.+|++|.. ...|.| .++.+.|+.|+++
T Consensus 98 ~gyPTlkiFrnG~~-~~~Y~G-~r~adgIv~wl~k 130 (493)
T KOG0190|consen 98 RGYPTLKIFRNGRS-AQDYNG-PREADGIVKWLKK 130 (493)
T ss_pred CCCCeEEEEecCCc-ceeccC-cccHHHHHHHHHh
Confidence 99999999999995 699998 7999999999976
No 48
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.72 E-value=5.4e-17 Score=134.63 Aligned_cols=100 Identities=32% Similarity=0.735 Sum_probs=91.3
Q ss_pred cCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCC-CeEEEEEEcCCCcHHHHHHcCCCCCCCEEEE
Q 012415 357 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 357 L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~-~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~l 435 (464)
|++++|++.+. ++++++|+||++||++|+.+.+.|+++++.+++. ++.|+.+|++.+ +.++ ++|+|.++|++++
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-~~~~i~~~P~~~~ 75 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-KDLA-SRFGVSGFPTIKF 75 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-HHHH-HhCCCCcCCEEEE
Confidence 57789999876 7899999999999999999999999999999864 599999999999 9999 9999999999999
Q ss_pred EeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 436 FPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 436 f~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
|++|+. .+.|.| ..+.++|..||++.
T Consensus 76 ~~~~~~-~~~~~g-~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEG-GRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecC-CCCHHHHHHHHHhc
Confidence 999886 788888 69999999999864
No 49
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.72 E-value=4.4e-17 Score=145.71 Aligned_cols=105 Identities=19% Similarity=0.395 Sum_probs=87.8
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCC--
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS-- 429 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~-- 429 (464)
..+.+++.++|++.+. .+.++++||+|||+||++|+.+.|.|+++++++++.++.|++||++++ ++++ ++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~-~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la-~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELE-RDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVA-EKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHH-HHcCceecC
Confidence 5788999999999875 235679999999999999999999999999999765699999999999 9999 9999988
Q ss_pred ----CCEEEEEeCCCCCeeecCC----------CCCCHHHHHHHH
Q 012415 430 ----FPTILFFPKHSSKPIKYPS----------ERRDVDSLMAFV 460 (464)
Q Consensus 430 ----~PTi~lf~~g~~~~~~y~g----------g~~~~e~L~~fI 460 (464)
+||+++|++|+. ...+.| +..+.++++.-+
T Consensus 105 ~v~~~PT~ilf~~Gk~-v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 105 LSKQLPTIILFQGGKE-VARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred CcCCCCEEEEEECCEE-EEEEeccccCccccccccccHHHHHHhc
Confidence 999999999985 223333 345677776544
No 50
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.72 E-value=3.7e-17 Score=138.79 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=84.7
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEec--CCCh---hHHhhHHHHHHHHHHhcCCCeEEEEEEcC-----CCcHHHHH
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQ---FCQAMEGSYVELADKLAGNGVKVGKFRAD-----GDQKEYAK 422 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya--~wC~---~C~~~~p~~~~la~~~~~~~v~~~~Id~d-----~~~~~l~~ 422 (464)
.++.|++.||++.+. .++.+||.||| |||+ +|+.+.|.+.+.+. .|.+++|||+ .+ .+||
T Consensus 2 g~v~L~~~nF~~~v~---~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~-~~L~- 71 (116)
T cd03007 2 GCVDLDTVTFYKVIP---KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLN-MELG- 71 (116)
T ss_pred CeeECChhhHHHHHh---cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhh-HHHH-
Confidence 578999999999987 88999999999 8888 67666666655443 4899999995 45 8899
Q ss_pred HcCCCC--CCCEEEEEeCCC-CCeeecCCCCCCHHHHHHHHHHh
Q 012415 423 QKLQLG--SFPTILFFPKHS-SKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 423 ~~~~I~--~~PTi~lf~~g~-~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
++|+|+ +||||++|.+|. ..++.|.|+.++.++|++||++.
T Consensus 72 ~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 72 ERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999 999999999984 34688998349999999999863
No 51
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.7e-17 Score=169.61 Aligned_cols=116 Identities=28% Similarity=0.576 Sum_probs=99.9
Q ss_pred CCCcccccccCCCCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCcH
Q 012415 340 NASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQK 418 (464)
Q Consensus 340 ~~~~~~~~~~~~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Id~d~~~~ 418 (464)
..++++++-.+..+|..|.++||++++. +.++.|||.||||||+||+++.|+|++|++.|++ .+|.|++||.+.|
T Consensus 354 ~kSqpiPe~~~~~pVkvvVgknfd~iv~--de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaN-- 429 (493)
T KOG0190|consen 354 LKSQPIPEDNDRSPVKVVVGKNFDDIVL--DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAN-- 429 (493)
T ss_pred cccCCCCcccccCCeEEEeecCHHHHhh--ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccc--
Confidence 3344555555556899999999999875 6899999999999999999999999999999998 4899999999999
Q ss_pred HHHHHcCCCCCCCEEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 012415 419 EYAKQKLQLGSFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 419 ~l~~~~~~I~~~PTi~lf~~g~~~-~~~y~gg~~~~e~L~~fI~~ 462 (464)
++. ...+.+||||++|+.|.+. ++.|.| .|+.++|..||++
T Consensus 430 d~~--~~~~~~fPTI~~~pag~k~~pv~y~g-~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 430 DVP--SLKVDGFPTILFFPAGHKSNPVIYNG-DRTLEDLKKFIKK 471 (493)
T ss_pred cCc--cccccccceEEEecCCCCCCCcccCC-CcchHHHHhhhcc
Confidence 444 5678889999999988754 899987 7999999999974
No 52
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.70 E-value=1.1e-16 Score=134.25 Aligned_cols=95 Identities=26% Similarity=0.621 Sum_probs=83.4
Q ss_pred chHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012415 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 437 (464)
Q Consensus 360 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~ 437 (464)
++|+++. .++++||.|||+||++|+.+.|.|+++++.+++ .++.++++|++.+ ++++ ++|+|.++||+++|+
T Consensus 7 ~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 7 DSFKDVR----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIA-SEFGVRGYPTIKLLK 80 (104)
T ss_pred hhhhhhc----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHH-hhcCCccccEEEEEc
Confidence 6777743 578999999999999999999999999999864 2599999999998 8999 999999999999997
Q ss_pred CCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 438 KHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 438 ~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+|. ...+.| .++.++|.+|++++
T Consensus 81 ~~~--~~~~~G-~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDL--AYNYRG-PRTKDDIVEFANRV 103 (104)
T ss_pred CCC--ceeecC-CCCHHHHHHHHHhh
Confidence 764 567877 68999999999875
No 53
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-16 Score=134.33 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=77.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 450 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~ 450 (464)
.+++++|+|||+||+||+.+.|.|.+|+.+|++ +.|++||+|+. .+++ ++++|...||++||++|+. ...+.|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~-~~~~-~~~~V~~~PTf~f~k~g~~-~~~~vG-- 92 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDEL-EEVA-KEFNVKAMPTFVFYKGGEE-VDEVVG-- 92 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccC-HhHH-HhcCceEeeEEEEEECCEE-EEEEec--
Confidence 369999999999999999999999999999986 99999999996 9999 9999999999999999985 566666
Q ss_pred CCHHHHHHHHHHh
Q 012415 451 RDVDSLMAFVDAL 463 (464)
Q Consensus 451 ~~~e~L~~fI~~l 463 (464)
.+.++|.+.|.+.
T Consensus 93 a~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 ANKAELEKKIAKH 105 (106)
T ss_pred CCHHHHHHHHHhc
Confidence 4777888888764
No 54
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.69 E-value=1.4e-16 Score=133.98 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=87.6
Q ss_pred CCCeeecCcchHHHHHhhcCCCCcEEEEEecCC--ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC
Q 012415 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 428 (464)
Q Consensus 351 ~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~w--C~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~ 428 (464)
..+.-+++..||++.+. .+..++|.||++| ||+|+.+.|.|++++++|.+ .+.|++||++++ ++++ .+|+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~-~~la-~~f~V~ 82 (111)
T cd02965 9 RHGWPRVDAATLDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADE-QALA-ARFGVL 82 (111)
T ss_pred hcCCcccccccHHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCC-HHHH-HHcCCC
Confidence 35677899999999885 7899999999997 99999999999999999987 689999999999 8999 999999
Q ss_pred CCCEEEEEeCCCCCeeecCCCCCCHHHHHH
Q 012415 429 SFPTILFFPKHSSKPIKYPSERRDVDSLMA 458 (464)
Q Consensus 429 ~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~ 458 (464)
++||+++|++|+. .....| ..+.+++..
T Consensus 83 sIPTli~fkdGk~-v~~~~G-~~~~~e~~~ 110 (111)
T cd02965 83 RTPALLFFRDGRY-VGVLAG-IRDWDEYVA 110 (111)
T ss_pred cCCEEEEEECCEE-EEEEeC-ccCHHHHhh
Confidence 9999999999983 334444 788877753
No 55
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.68 E-value=3.1e-16 Score=133.80 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=85.9
Q ss_pred CCeeecCc-chHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012415 352 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 430 (464)
Q Consensus 352 ~~v~~L~~-~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~ 430 (464)
+.+.++++ ++|++.+. ++++++|+||++||++|+.+.|.++++++++.+ +.|++||++++ ++++ ++|+|.++
T Consensus 4 g~v~~i~~~~~~~~~i~---~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~~-~~l~-~~~~v~~v 76 (113)
T cd02989 4 GKYREVSDEKEFFEIVK---SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEKA-PFLV-EKLNIKVL 76 (113)
T ss_pred CCeEEeCCHHHHHHHHh---CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcccC-HHHH-HHCCCccC
Confidence 35777777 88999886 678999999999999999999999999999875 99999999999 9999 99999999
Q ss_pred CEEEEEeCCCCC-----eeecCC-CCCCHHHHHHHH
Q 012415 431 PTILFFPKHSSK-----PIKYPS-ERRDVDSLMAFV 460 (464)
Q Consensus 431 PTi~lf~~g~~~-----~~~y~g-g~~~~e~L~~fI 460 (464)
||+++|++|+.. .....+ +..+.+++..|+
T Consensus 77 Pt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 77 PTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 999999999742 112222 357788888776
No 56
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.68 E-value=2.1e-16 Score=134.83 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=84.6
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
+.+.++++++|.+.+...+.+++++|+||+|||++|+.+.|.|+++++++.+ +.|++||++++ +++ ++|+|.++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~~--~l~-~~~~i~~~P 78 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEKA--FLV-NYLDIKVLP 78 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchhh--HHH-HhcCCCcCC
Confidence 3578899999999886222248999999999999999999999999999975 89999999977 899 999999999
Q ss_pred EEEEEeCCCCCeeecC------CCCCCHHHHHHHH
Q 012415 432 TILFFPKHSSKPIKYP------SERRDVDSLMAFV 460 (464)
Q Consensus 432 Ti~lf~~g~~~~~~y~------gg~~~~e~L~~fI 460 (464)
|+++|++|+.. ..+. |...+.+.|.+++
T Consensus 79 t~~~f~~G~~v-~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 79 TLLVYKNGELI-DNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEEECCEEE-EEEecHHHhCCCCCCHHHHHHHh
Confidence 99999999842 2222 2346677777765
No 57
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.68 E-value=5.5e-16 Score=132.48 Aligned_cols=103 Identities=24% Similarity=0.533 Sum_probs=85.9
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCC-cHHHHHHcCCCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGD-QKEYAKQKLQLGS 429 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Id~d~~-~~~l~~~~~~I~~ 429 (464)
++++++.++|++.+. +.++++||+||++||++|+.+.|.|+++++.+++ +.+.|+.+||+.+ +++++ ++|+|++
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~-~~~~i~~ 78 (114)
T cd02992 2 PVIVLDAASFNSALL--GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALC-RDFGVTG 78 (114)
T ss_pred CeEECCHHhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHH-HhCCCCC
Confidence 689999999999886 3457999999999999999999999999999864 2589999998642 27899 9999999
Q ss_pred CCEEEEEeCCCCC---eeecCCCCCCHHHHHH
Q 012415 430 FPTILFFPKHSSK---PIKYPSERRDVDSLMA 458 (464)
Q Consensus 430 ~PTi~lf~~g~~~---~~~y~gg~~~~e~L~~ 458 (464)
+||+++|++|..+ ...|.|..+..+++..
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 9999999988743 3567775577777644
No 58
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.67 E-value=5.5e-16 Score=136.23 Aligned_cols=101 Identities=11% Similarity=0.192 Sum_probs=83.4
Q ss_pred CcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE-EE
Q 012415 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL-FF 436 (464)
Q Consensus 358 ~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~-lf 436 (464)
+..+|++.+. ...++++||.|||+||+||+.|.|.|+++++++++ .+.|++||+|++ ++++ ++|+|++.||++ ||
T Consensus 10 s~~e~d~~I~-~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~-~dla-~~y~I~~~~t~~~ff 85 (142)
T PLN00410 10 SGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEV-PDFN-TMYELYDPCTVMFFF 85 (142)
T ss_pred CHHHHHHHHH-hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCC-HHHH-HHcCccCCCcEEEEE
Confidence 4578888875 33678999999999999999999999999999986 688899999999 9999 999999777666 88
Q ss_pred eCCCCCeeecCCC--------CCCHHHHHHHHHHh
Q 012415 437 PKHSSKPIKYPSE--------RRDVDSLMAFVDAL 463 (464)
Q Consensus 437 ~~g~~~~~~y~gg--------~~~~e~L~~fI~~l 463 (464)
++|+. .+.+..| ..+.++|++-++.+
T Consensus 86 k~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 86 RNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred ECCeE-EEEEecccccccccccCCHHHHHHHHHHH
Confidence 88875 3444433 46788888887754
No 59
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.67 E-value=4.6e-16 Score=127.80 Aligned_cols=99 Identities=31% Similarity=0.677 Sum_probs=87.5
Q ss_pred ecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012415 356 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 356 ~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~-~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~ 434 (464)
+|+.++|.+.+. ++++++|+||++||++|+.+.|.|.++++.++ +.++.|+.+|++.+ ..++ ++|+|.++||++
T Consensus 2 ~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~~~~i~~~Pt~~ 76 (101)
T cd02961 2 ELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-NDLC-SEYGVRGYPTIK 76 (101)
T ss_pred cccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-HHHH-HhCCCCCCCEEE
Confidence 578889999887 66699999999999999999999999999994 23799999999998 9999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 435 FFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 435 lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
+|.+++.....|.| ..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~g-~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEG-PRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCC-CcCHHHHHhhC
Confidence 99888444778887 58999998875
No 60
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.66 E-value=1.4e-15 Score=125.64 Aligned_cols=100 Identities=25% Similarity=0.432 Sum_probs=86.3
Q ss_pred cCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012415 357 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 436 (464)
Q Consensus 357 L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf 436 (464)
++.++|.+.+. +.+++++|+||++||++|+.+.|.|+++++.+.+ ++.|+.+|++.+ +.++ ++|+|.++||+++|
T Consensus 1 i~~~~~~~~~~--~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~P~~~~~ 75 (101)
T TIGR01068 1 LTDANFDETIA--SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDEN-PDIA-AKYGIRSIPTLLLF 75 (101)
T ss_pred CCHHHHHHHHh--hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HHcCCCcCCEEEEE
Confidence 35678888775 3467999999999999999999999999999876 699999999999 8999 99999999999999
Q ss_pred eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 437 PKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 437 ~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
++|+. ...+.| ..+.+.|.+||++.
T Consensus 76 ~~g~~-~~~~~g-~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 76 KNGKE-VDRSVG-ALPKAALKQLINKN 100 (101)
T ss_pred eCCcE-eeeecC-CCCHHHHHHHHHhh
Confidence 98873 344445 68899999999864
No 61
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.65 E-value=9.3e-16 Score=128.52 Aligned_cols=95 Identities=18% Similarity=0.339 Sum_probs=80.4
Q ss_pred chHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCC---cHHHHHHcCCCCCCCEE
Q 012415 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTI 433 (464)
Q Consensus 360 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Id~d~~---~~~l~~~~~~I~~~PTi 433 (464)
+.|++.++ +++++||+||++||++|+.+.+.+ .++++.+.+ ++.++.||++.+ ..+++ ++|+|.++||+
T Consensus 2 ~~~~~~~~---~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti 76 (104)
T cd02953 2 AALAQALA---QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALL-KRFGVFGPPTY 76 (104)
T ss_pred HHHHHHHH---cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHH-HHcCCCCCCEE
Confidence 46777765 789999999999999999999988 688888876 799999999874 26888 89999999999
Q ss_pred EEEeC--CCCCeeecCCCCCCHHHHHHHHH
Q 012415 434 LFFPK--HSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 434 ~lf~~--g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
++|++ |+ ....+.| ..+.++|.++|+
T Consensus 77 ~~~~~~~g~-~~~~~~G-~~~~~~l~~~l~ 104 (104)
T cd02953 77 LFYGPGGEP-EPLRLPG-FLTADEFLEALE 104 (104)
T ss_pred EEECCCCCC-CCccccc-ccCHHHHHHHhC
Confidence 99984 54 3566666 799999998874
No 62
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.64 E-value=2.7e-15 Score=126.16 Aligned_cols=100 Identities=10% Similarity=0.218 Sum_probs=82.6
Q ss_pred chHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCC
Q 012415 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 439 (464)
Q Consensus 360 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g 439 (464)
+++++.+.. ..+++|+|.|+|+||++|+.|.|.|+++++++++ .+.|++||+|+. ++++ ++|+|...||++||++|
T Consensus 3 ~~~d~~i~~-~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev-~dva-~~y~I~amPtfvffkng 78 (114)
T cd02986 3 KEVDQAIKS-TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKV-PVYT-QYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHh-cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEecccc-HHHH-HhcCceeCcEEEEEECC
Confidence 466776652 2589999999999999999999999999999975 499999999999 9999 99999999999999999
Q ss_pred CCCeeecCCCC--------CCHHHHHHHHHHh
Q 012415 440 SSKPIKYPSER--------RDVDSLMAFVDAL 463 (464)
Q Consensus 440 ~~~~~~y~gg~--------~~~e~L~~fI~~l 463 (464)
+-..+.+..|. .+.++++..|+.+
T Consensus 79 kh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 79 QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred cEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 85455554332 3457777777653
No 63
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.64 E-value=1.6e-15 Score=125.07 Aligned_cols=95 Identities=24% Similarity=0.399 Sum_probs=79.9
Q ss_pred cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012415 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 438 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~ 438 (464)
.++|++++... .+++++|+||++||++|+.|.|.|+++++++.. ++.++++|++.+ ++++ ++|+|.++||+++|++
T Consensus 2 ~~~~~~~~~~~-~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~-~~~~-~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 2 EEEFEELLKSD-ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEEL-PEIS-EKFEITAVPTFVFFRN 77 (97)
T ss_pred HHHHHHHHhhC-CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccC-HHHH-HhcCCccccEEEEEEC
Confidence 46788887622 269999999999999999999999999999744 799999999998 8999 9999999999999998
Q ss_pred CCCCeeecCCCCCCHHHHHHHH
Q 012415 439 HSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 439 g~~~~~~y~gg~~~~e~L~~fI 460 (464)
|+ .+....| .+.++|.+.|
T Consensus 78 g~--~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 78 GT--IVDRVSG-ADPKELAKKV 96 (97)
T ss_pred CE--EEEEEeC-CCHHHHHHhh
Confidence 87 4444332 5778888766
No 64
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.62 E-value=4e-15 Score=132.10 Aligned_cols=98 Identities=22% Similarity=0.345 Sum_probs=81.0
Q ss_pred cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEEEEe
Q 012415 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFP 437 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~-~~l~~~~~~I~~~PTi~lf~ 437 (464)
...|++.+. .++++||+|||+||++|+.+.|.|.++++.+.+ .+.|+.||++.+. .+++ ++|+|.++||++||.
T Consensus 10 ~~~~~~a~~---~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~-~~~~V~~iPt~v~~~ 84 (142)
T cd02950 10 STPPEVALS---NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEI-DRYRVDGIPHFVFLD 84 (142)
T ss_pred cCCHHHHHh---CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHH-HHcCCCCCCEEEEEC
Confidence 356777665 789999999999999999999999999999976 5888888887652 5788 899999999999995
Q ss_pred -CCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 438 -KHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 438 -~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+|+. ...+.| ..+.++|.++|+++
T Consensus 85 ~~G~~-v~~~~G-~~~~~~l~~~l~~l 109 (142)
T cd02950 85 REGNE-EGQSIG-LQPKQVLAQNLDAL 109 (142)
T ss_pred CCCCE-EEEEeC-CCCHHHHHHHHHHH
Confidence 5652 344455 78889999999875
No 65
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.60 E-value=5.4e-15 Score=135.71 Aligned_cols=107 Identities=19% Similarity=0.270 Sum_probs=88.8
Q ss_pred CCeeecCc-chHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012415 352 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 430 (464)
Q Consensus 352 ~~v~~L~~-~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~ 430 (464)
..+.+++. ++|.+.+.....+.+|||.||++||++|+.|.|.|++|+.+|.. +.|++||++.+ +++ .+|+|.++
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d~~--~l~-~~f~v~~v 136 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRASAT--GAS-DEFDTDAL 136 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEeccch--hhH-HhCCCCCC
Confidence 47889988 99999886333345999999999999999999999999999964 99999999976 788 89999999
Q ss_pred CEEEEEeCCCCC--e---eecCCCCCCHHHHHHHHHHh
Q 012415 431 PTILFFPKHSSK--P---IKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 431 PTi~lf~~g~~~--~---~~y~gg~~~~e~L~~fI~~l 463 (464)
||+++|++|+.. . ....|...+.+.|..|+.+.
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999999842 1 12223467889999988764
No 66
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.60 E-value=6.4e-15 Score=154.88 Aligned_cols=105 Identities=27% Similarity=0.589 Sum_probs=94.7
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEYAKQKLQLGSF 430 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~Id~d~~~~~l~~~~~~I~~~ 430 (464)
.|++|+.++|+++++ .+++++|+|||+||++|+.+.|.|.++++.+.+. ++.|++|||+.+ .++| ++|+|.++
T Consensus 2 ~v~~l~~~~~~~~i~---~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~-~~~~i~~~ 76 (462)
T TIGR01130 2 DVLVLTKDNFDDFIK---SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLA-QKYGVSGY 76 (462)
T ss_pred CceECCHHHHHHHHh---cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHH-HhCCCccc
Confidence 588999999999987 7889999999999999999999999999998753 599999999999 9999 99999999
Q ss_pred CEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 431 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 431 PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
||+++|++|+.....|.| .++.++|.+||+++
T Consensus 77 Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNG-PRDADGIVKYMKKQ 108 (462)
T ss_pred cEEEEEeCCccceeEecC-CCCHHHHHHHHHHh
Confidence 999999988843477877 69999999999864
No 67
>PTZ00102 disulphide isomerase; Provisional
Probab=99.60 E-value=8.7e-15 Score=154.98 Aligned_cols=108 Identities=26% Similarity=0.544 Sum_probs=96.7
Q ss_pred CCCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012415 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGS 429 (464)
Q Consensus 351 ~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Id~d~~~~~l~~~~~~I~~ 429 (464)
...|..|+.++|++.+. +.++++||+|||+||++|+.+.|.|+++++.+++ ..+.|+++|++.+ ...+ ++|++++
T Consensus 356 ~~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-~~~~-~~~~v~~ 431 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-ETPL-EEFSWSA 431 (477)
T ss_pred CCCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-ccch-hcCCCcc
Confidence 45799999999999864 4789999999999999999999999999999876 3699999999999 7888 8999999
Q ss_pred CCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 430 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 430 ~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+||+++|++|+..+..|.| .++.++|.+||++.
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G-~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEG-ERTVEGFKEFVNKH 464 (477)
T ss_pred cCeEEEEECCCcceeEecC-cCCHHHHHHHHHHc
Confidence 9999999998865678888 79999999999864
No 68
>PTZ00102 disulphide isomerase; Provisional
Probab=99.59 E-value=1e-14 Score=154.51 Aligned_cols=104 Identities=27% Similarity=0.597 Sum_probs=94.7
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGS 429 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Id~d~~~~~l~~~~~~I~~ 429 (464)
..+..|+.++|++++. .++.+||+|||+||++|+.+.|.|+++++.+.. .++.|++|||+.+ .++| ++|+|.+
T Consensus 32 ~~v~~l~~~~f~~~i~---~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~-~~~~i~~ 106 (477)
T PTZ00102 32 EHVTVLTDSTFDKFIT---ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELA-QEFGVRG 106 (477)
T ss_pred CCcEEcchhhHHHHHh---cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHH-HhcCCCc
Confidence 4689999999999886 678999999999999999999999999988864 3699999999999 9999 9999999
Q ss_pred CCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 430 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 430 ~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+||+++|++|+ .+.|.| .++.+.|.+|++++
T Consensus 107 ~Pt~~~~~~g~--~~~y~g-~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 107 YPTIKFFNKGN--PVNYSG-GRTADGIVSWIKKL 137 (477)
T ss_pred ccEEEEEECCc--eEEecC-CCCHHHHHHHHHHh
Confidence 99999999997 458887 69999999999875
No 69
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.58 E-value=1.2e-14 Score=120.25 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=77.6
Q ss_pred CCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCC
Q 012415 370 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 449 (464)
Q Consensus 370 ~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg 449 (464)
+.+++++|+||++||++|+.+.|.++++++.+.+ ++.++++|++++ ++++ ++++|.++||+++|++|+. ...+.|
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~-~~l~-~~~~v~~vPt~~i~~~g~~-v~~~~g- 85 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED-QEIA-EAAGIMGTPTVQFFKDKEL-VKEISG- 85 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC-HHHH-HHCCCeeccEEEEEECCeE-EEEEeC-
Confidence 4789999999999999999999999999999986 799999999999 9999 9999999999999998763 455555
Q ss_pred CCCHHHHHHHHH
Q 012415 450 RRDVDSLMAFVD 461 (464)
Q Consensus 450 ~~~~e~L~~fI~ 461 (464)
..+.++|.+||+
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 688999998874
No 70
>PTZ00051 thioredoxin; Provisional
Probab=99.58 E-value=1.1e-14 Score=120.43 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=78.2
Q ss_pred eeecC-cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 354 LVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 354 v~~L~-~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
+.+++ .++|+++++ .+++++|+||++||++|+.+.|.|+++++.+.+ +.|+.+|++.+ .+++ ++|+|.++||
T Consensus 2 v~~i~~~~~~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~-~~~~-~~~~v~~~Pt 74 (98)
T PTZ00051 2 VHIVTSQAEFESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDEL-SEVA-EKENITSMPT 74 (98)
T ss_pred eEEecCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcch-HHHH-HHCCCceeeE
Confidence 34444 467777775 789999999999999999999999999998864 99999999998 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHH
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLM 457 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~ 457 (464)
+++|++|+. ...+.| ...++|.
T Consensus 75 ~~~~~~g~~-~~~~~G--~~~~~~~ 96 (98)
T PTZ00051 75 FKVFKNGSV-VDTLLG--ANDEALK 96 (98)
T ss_pred EEEEeCCeE-EEEEeC--CCHHHhh
Confidence 999998874 345554 4666654
No 71
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.57 E-value=2e-14 Score=122.66 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=76.9
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCC-eeecCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSK-PIKYPSE 449 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~-~~~y~gg 449 (464)
....++|.||++||++|+.+.|.++++++.+ + .+.|..+|++.+ ++++ ++|+|.++||+++|++|+.. .+.+.|
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~~-~~l~-~~~~v~~vPt~~i~~~g~~~~~~~~~G- 95 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDED-KEKA-EKYGVERVPTTIFLQDGGKDGGIRYYG- 95 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCcC-HHHH-HHcCCCcCCEEEEEeCCeecceEEEEe-
Confidence 5677999999999999999999999999887 3 599999999998 9999 99999999999999887532 346666
Q ss_pred CCCHHHHHHHHHHh
Q 012415 450 RRDVDSLMAFVDAL 463 (464)
Q Consensus 450 ~~~~e~L~~fI~~l 463 (464)
.....+|.+||+.+
T Consensus 96 ~~~~~el~~~i~~i 109 (113)
T cd02975 96 LPAGYEFASLIEDI 109 (113)
T ss_pred cCchHHHHHHHHHH
Confidence 67888999999875
No 72
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.56 E-value=4.8e-15 Score=141.01 Aligned_cols=88 Identities=31% Similarity=0.656 Sum_probs=81.1
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS 448 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~g 448 (464)
....|+|.||||||.||+++.|+|.++...+++ ..|+++++||... +.++ .+|+|++||||.||+++- .+.|.|
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiA-nefgiqGYPTIk~~kgd~--a~dYRG 117 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIA-NEFGIQGYPTIKFFKGDH--AIDYRG 117 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhH-hhhccCCCceEEEecCCe--eeecCC
Confidence 578999999999999999999999999988876 3689999999999 9999 999999999999999988 899999
Q ss_pred CCCCHHHHHHHHHHh
Q 012415 449 ERRDVDSLMAFVDAL 463 (464)
Q Consensus 449 g~~~~e~L~~fI~~l 463 (464)
.+..+.|++|..+.
T Consensus 118 -~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 118 -GREKDAIIEFAHRC 131 (468)
T ss_pred -CccHHHHHHHHHhc
Confidence 59999999998653
No 73
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.55 E-value=4.7e-14 Score=121.91 Aligned_cols=101 Identities=8% Similarity=0.148 Sum_probs=80.3
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------HHHHH
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------KEYAK 422 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~----------~~l~~ 422 (464)
.+..++.++|.+.++ .++.++|+||++|||+|+.+.|.+.+++++. ++.|+.||++.+. .++.
T Consensus 7 ~~~~it~~~~~~~i~---~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~- 79 (122)
T TIGR01295 7 GLEVTTVVRALEALD---KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR- 79 (122)
T ss_pred cceecCHHHHHHHHH---cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-
Confidence 466778888888886 7889999999999999999999999999983 4789999988541 2455
Q ss_pred HcCC----CCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 423 QKLQ----LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 423 ~~~~----I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
++|+ |.++||+++|++|+. .....|+..+.++|.+|+.
T Consensus 80 ~~~~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 80 SRFGIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHcCCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence 5655 556999999999984 3334454678999999874
No 74
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.54 E-value=1.5e-14 Score=138.23 Aligned_cols=100 Identities=26% Similarity=0.533 Sum_probs=90.2
Q ss_pred cCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC----CCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 357 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 357 L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~----~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
++.+|++.++. .+..|+|.|||+||++.+.++|+|++.+..++. .++.+++|||+.+ ..++ ++|.|..|||
T Consensus 1 lt~~N~~~il~---s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia-~ky~I~KyPT 75 (375)
T KOG0912|consen 1 LTSENIDSILD---SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIA-DKYHINKYPT 75 (375)
T ss_pred CccccHHHhhc---cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHh-hhhccccCce
Confidence 45678888886 799999999999999999999999999988764 4799999999999 9999 9999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
+.+|.+|..--..|.| .|+++.|.+||++
T Consensus 76 lKvfrnG~~~~rEYRg-~RsVeaL~efi~k 104 (375)
T KOG0912|consen 76 LKVFRNGEMMKREYRG-QRSVEALIEFIEK 104 (375)
T ss_pred eeeeeccchhhhhhcc-chhHHHHHHHHHH
Confidence 9999999964457988 7999999999986
No 75
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.53 E-value=8.9e-14 Score=120.52 Aligned_cols=97 Identities=22% Similarity=0.475 Sum_probs=77.8
Q ss_pred hHHHHHhhcCCC-CcEEEEEecCCChhHHhhHHHHH---HHHHHhcCCCeEEEEEEcCCC------------cHHHHHHc
Q 012415 361 GMENLARLDHRQ-EPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGD------------QKEYAKQK 424 (464)
Q Consensus 361 ~f~~~i~~~~~~-k~vlV~Fya~wC~~C~~~~p~~~---~la~~~~~~~v~~~~Id~d~~------------~~~l~~~~ 424 (464)
.+++..+ ++ +++||+||++||++|+.++|.+. .+.+.+.+ ++.++.||++.+ +.+++ .+
T Consensus 5 ~~~~a~~---~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~-~~ 79 (125)
T cd02951 5 DLAEAAA---DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELA-RK 79 (125)
T ss_pred HHHHHHH---cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHH-HH
Confidence 3444444 77 99999999999999999999885 66666765 689999999864 26888 89
Q ss_pred CCCCCCCEEEEEeCC-CCCeeecCCCCCCHHHHHHHHHHh
Q 012415 425 LQLGSFPTILFFPKH-SSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 425 ~~I~~~PTi~lf~~g-~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
|+|.++||++||.++ ++....+.| ..+.+.+.++|+.+
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G-~~~~~~~~~~l~~~ 118 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPG-YLPPDEFLAYLEYV 118 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecC-CCCHHHHHHHHHHH
Confidence 999999999999875 443455555 68889999998865
No 76
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.51 E-value=8.6e-14 Score=129.51 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=85.5
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
+.|.+++.++|...+...+.+.+|||.||++||++|+.|.|.|++|+.+|.. +.|++||++.. . ..|+|.++|
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~~----~-~~~~i~~lP 154 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQC----I-PNYPDKNLP 154 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHHh----H-hhCCCCCCC
Confidence 5789999999988665333356899999999999999999999999999974 99999999754 5 689999999
Q ss_pred EEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHHh
Q 012415 432 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 432 Ti~lf~~g~~~-----~~~y~gg~~~~e~L~~fI~~l 463 (464)
|+++|++|+.. .....|...+.++|..+|.+.
T Consensus 155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 99999999842 112223367889999888653
No 77
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.50 E-value=1.9e-13 Score=109.99 Aligned_cols=92 Identities=29% Similarity=0.503 Sum_probs=78.9
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCC
Q 012415 361 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 361 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
+|++.+. .+++++|+||++||++|+.+.+.++++++. .+ ++.|+.+|++.+ .+++ ++|++.++||+++|.+|+
T Consensus 2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~-~~~~-~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDEN-PELA-EEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCC-hhHH-HhcCcccccEEEEEECCE
Confidence 5666665 559999999999999999999999999988 33 699999999998 8999 999999999999999887
Q ss_pred CCeeecCCCCCCHHHHHHHHH
Q 012415 441 SKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 441 ~~~~~y~gg~~~~e~L~~fI~ 461 (464)
. ...+.| ..+.+.|.++|+
T Consensus 75 ~-~~~~~g-~~~~~~l~~~i~ 93 (93)
T cd02947 75 E-VDRVVG-ADPKEELEEFLE 93 (93)
T ss_pred E-EEEEec-CCCHHHHHHHhC
Confidence 3 455555 577899998873
No 78
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.9e-14 Score=129.67 Aligned_cols=102 Identities=19% Similarity=0.303 Sum_probs=86.7
Q ss_pred eeec-CcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012415 354 LVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432 (464)
Q Consensus 354 v~~L-~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PT 432 (464)
|+.+ ++.+|+..+. ....+.++|+|+|+||+||+.+.|.|+.|+.+|.+ .+|++||+|+. +..+ ..++|...||
T Consensus 3 Vi~v~~d~df~~~ls-~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~c-~~ta-a~~gV~amPT 77 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELS-AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDEC-RGTA-ATNGVNAMPT 77 (288)
T ss_pred eEEecCcHHHHHhhh-ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHHh-hchh-hhcCcccCce
Confidence 4445 4567887765 34568999999999999999999999999999976 99999999999 8889 8999999999
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+++|.+|.+ ...+.| .|...|.+.|.++
T Consensus 78 Fiff~ng~k-id~~qG--Ad~~gLe~kv~~~ 105 (288)
T KOG0908|consen 78 FIFFRNGVK-IDQIQG--ADASGLEEKVAKY 105 (288)
T ss_pred EEEEecCeE-eeeecC--CCHHHHHHHHHHH
Confidence 999999985 566766 5888888877653
No 79
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.49 E-value=1.4e-13 Score=127.27 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=107.8
Q ss_pred cEEEEechhHHHHHH-HHHHHcC----CCeEEEEEeCCCCcH--HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTG----RPFRVFSLDTGRLNP--ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~----~~i~vv~~DTg~~fp--eT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 186 (464)
+|+|++|||+||+++ +++.+.. .++.++|+|+|..+. ++.++++++++.+|++++++..... .+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~- 71 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALA--------PK- 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccc--------cC-
Confidence 488999999999766 7777654 379999999998774 9999999999999999987721100 00
Q ss_pred CCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCC--CCcC--ccCCCCCeEEEEeCccC
Q 012415 187 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEG--LEGGVGSLVKWNPVANV 260 (464)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~--~~~~--~~~~~~~~~k~~PI~dW 260 (464)
.......+|+..+..-+.++.. +.+.+++|.+.++.. .+..+....... .... .....++...++||++|
T Consensus 72 ---~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~-e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~ 147 (185)
T cd01992 72 ---PGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQA-ETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGI 147 (185)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHH-HHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCC
Confidence 1123445787777777777766 567899999999964 332111110000 0000 00112457789999999
Q ss_pred cHHHHHHHHHhcCCCcchhh
Q 012415 261 KGNDIWNFLRTMDVPINSLH 280 (464)
Q Consensus 261 t~~DVw~yi~~~~lp~npLy 280 (464)
+..|||.|.++++||+.+-+
T Consensus 148 ~k~eI~~~~~~~~l~~~~~~ 167 (185)
T cd01992 148 TRAEIEAYLRENGLPWWEDP 167 (185)
T ss_pred CHHHHHHHHHHcCCCeEECC
Confidence 99999999999999987655
No 80
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.48 E-value=2.5e-13 Score=113.19 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=79.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC--CCCEEEEEeC--CCCCeeec
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--SFPTILFFPK--HSSKPIKY 446 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~--~~PTi~lf~~--g~~~~~~y 446 (464)
.+++++|.||++||++|+.+.|.++++++++.+ .+.|+.||++++ ++++ +.|+|. ++|++++|++ |+ .+.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~-~~~~-~~~~i~~~~~P~~~~~~~~~~~--k~~~ 85 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDF-GRHL-EYFGLKEEDLPVIAIINLSDGK--KYLM 85 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhh-HHHH-HHcCCChhhCCEEEEEeccccc--ccCC
Confidence 368999999999999999999999999999997 799999999998 8999 999999 9999999988 54 4556
Q ss_pred CCCCCCHHHHHHHHHHh
Q 012415 447 PSERRDVDSLMAFVDAL 463 (464)
Q Consensus 447 ~gg~~~~e~L~~fI~~l 463 (464)
.++..+.++|.+||+++
T Consensus 86 ~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 PEEELTAESLEEFVEDF 102 (103)
T ss_pred CccccCHHHHHHHHHhh
Confidence 66556999999999875
No 81
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.47 E-value=3e-13 Score=142.20 Aligned_cols=106 Identities=25% Similarity=0.562 Sum_probs=93.5
Q ss_pred CCCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-C-CeEEEEEEcCCCcHHHHHHcCCCC
Q 012415 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-N-GVKVGKFRADGDQKEYAKQKLQLG 428 (464)
Q Consensus 351 ~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~-~v~~~~Id~d~~~~~l~~~~~~I~ 428 (464)
...|..|+..+|++++. +.++++||+|||+||++|+.+.|.|+++++.+++ . ++.|+++|++.+ ++. . ++|.
T Consensus 345 ~~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~-~-~~i~ 418 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVL--DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVP-P-FEVE 418 (462)
T ss_pred CCccEEeeCcCHHHHhc--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccC-C-CCcc
Confidence 45789999999999874 4689999999999999999999999999999987 3 799999999987 566 5 9999
Q ss_pred CCCEEEEEeCCCC-CeeecCCCCCCHHHHHHHHHHh
Q 012415 429 SFPTILFFPKHSS-KPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 429 ~~PTi~lf~~g~~-~~~~y~gg~~~~e~L~~fI~~l 463 (464)
++||+++|++|+. .+..|.| .++.++|.+||++.
T Consensus 419 ~~Pt~~~~~~~~~~~~~~~~g-~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 419 GFPTIKFVPAGKKSEPVPYDG-DRTLEDFSKFIAKH 453 (462)
T ss_pred ccCEEEEEeCCCCcCceEecC-cCCHHHHHHHHHhc
Confidence 9999999998876 4678887 69999999999863
No 82
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.47 E-value=2.7e-13 Score=116.10 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=76.1
Q ss_pred cchHHHHHhhcCCCCcEEEEEec-------CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------cHHHHHHcC
Q 012415 359 RTGMENLARLDHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQKL 425 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~------~~~l~~~~~ 425 (464)
.++|.+.+. ...+++++|+||| +||++|+.+.|.++++++++++ ++.|++||++.. +.++. .+|
T Consensus 9 ~~~f~~~i~-~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~-~~~ 85 (119)
T cd02952 9 YEEFLKLLK-SHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFR-TDP 85 (119)
T ss_pred HHHHHHHHH-hcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhH-hcc
Confidence 456777665 2247899999999 9999999999999999999985 699999999863 15888 899
Q ss_pred CCC-CCCEEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 426 QLG-SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 426 ~I~-~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
+|. ++||+++|++|++ .+... =.+.+.+..|+
T Consensus 86 ~I~~~iPT~~~~~~~~~-l~~~~--c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQR-LVEDE--CLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCce-ecchh--hcCHHHHHHhh
Confidence 998 9999999977763 33332 25666666664
No 83
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.39 E-value=2.5e-12 Score=119.51 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=103.9
Q ss_pred cEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~----~~~i~vv~~DTg~~f--peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 186 (464)
+|+|++|||+||+++ +++.+. +.++.++++|+|... ++..+.++++++.+|++++++.-...... ...+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~- 76 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALA---KGKK- 76 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhc---cccC-
Confidence 488999999999766 776653 557899999999864 67789999999999999877643221110 0111
Q ss_pred CCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecC-----CCCcCccCCCCCeEEEEeCcc
Q 012415 187 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVD-----PVFEGLEGGVGSLVKWNPVAN 259 (464)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d-----~~~~~~~~~~~~~~k~~PI~d 259 (464)
......|...+..-+.++.. +.+.+++|.+.++.. .+..+..+... ..........+++..++||++
T Consensus 77 -----~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~-e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~ 150 (189)
T TIGR02432 77 -----KNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQA-ETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLG 150 (189)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH-HHHHHHHHcCCCcccccCCccccccCCCCEEECCCCC
Confidence 12233466666666666665 567899999999864 32111111000 000000000115778999999
Q ss_pred CcHHHHHHHHHhcCCCcchhh
Q 012415 260 VKGNDIWNFLRTMDVPINSLH 280 (464)
Q Consensus 260 Wt~~DVw~yi~~~~lp~npLy 280 (464)
|+..|||.|.+.++||+..-+
T Consensus 151 ~~k~ei~~~~~~~~lp~~~~~ 171 (189)
T TIGR02432 151 ISKSEIEEYLKENGLPWFEDE 171 (189)
T ss_pred CCHHHHHHHHHHcCCCeeeCC
Confidence 999999999999999986665
No 84
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.38 E-value=2.9e-12 Score=102.09 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=69.9
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHH
Q 012415 375 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD 454 (464)
Q Consensus 375 vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e 454 (464)
.+..||++||++|+.+.|.++++++.++. .+.+.+||++.+ ++++ ++|++.++||+++ +|+ ..+.| ..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~vPt~~~--~g~---~~~~G-~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN-PQKA-MEYGIMAVPAIVI--NGD---VEFIG-APTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC-HHHH-HHcCCccCCEEEE--CCE---EEEec-CCCHH
Confidence 46789999999999999999999999976 699999999998 9999 8999999999986 665 35666 67899
Q ss_pred HHHHHHHHh
Q 012415 455 SLMAFVDAL 463 (464)
Q Consensus 455 ~L~~fI~~l 463 (464)
+|.++|+++
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999999864
No 85
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.36 E-value=7.3e-12 Score=115.62 Aligned_cols=159 Identities=17% Similarity=0.212 Sum_probs=100.7
Q ss_pred cEEEEechhHHHHHH-HHHHHc------CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 012415 114 DIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 184 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~------~~~i~vv~~DTg~~f--peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~ 184 (464)
+|+|++|||+||+++ +++.+. +.++.++++|+|... ++..++++++++++|++++++..... + ......
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~ 78 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEE-Y-TDDIEV 78 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhh-c-chhhhh
Confidence 489999999999866 777664 336789999999764 78999999999999999887754311 1 000000
Q ss_pred CCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCcee------ecCCCCcCccCCCCCeEEEEe
Q 012415 185 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVV------QVDPVFEGLEGGVGSLVKWNP 256 (464)
Q Consensus 185 g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~------~~d~~~~~~~~~~~~~~k~~P 256 (464)
... ........|...+...+.+..+ +.+++++|...||.. ....+... ...+... .....+++..++|
T Consensus 79 ~~~--~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~-et~l~~~~~g~~~~~~~~~~~-~~~~~~~~~iirP 154 (185)
T cd01993 79 KKR--GGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEA-ETLLMNLLRGGILRLMRPGPI-LYLDEGDVTRIRP 154 (185)
T ss_pred hcc--CCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHH-HHHHHHHHhcCHHHHcCCCCc-cccCCCCceEEee
Confidence 000 0011122355555556655554 557999999999864 21110000 0000000 0001134677899
Q ss_pred CccCcHHHHHHHHHhcCCCcch
Q 012415 257 VANVKGNDIWNFLRTMDVPINS 278 (464)
Q Consensus 257 I~dWt~~DVw~yi~~~~lp~np 278 (464)
|.+|+..||+.|.+.++||+.+
T Consensus 155 L~~~~k~eI~~~~~~~~l~~~~ 176 (185)
T cd01993 155 LVYVREKEIVLYAELNGLPFVE 176 (185)
T ss_pred cccCCHHHHHHHHHHcCCCccc
Confidence 9999999999999999998854
No 86
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.32 E-value=4.2e-12 Score=108.96 Aligned_cols=89 Identities=13% Similarity=0.307 Sum_probs=62.4
Q ss_pred CCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCC--CCEEEEEe-CCCCC--ee
Q 012415 370 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS--FPTILFFP-KHSSK--PI 444 (464)
Q Consensus 370 ~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~--~PTi~lf~-~g~~~--~~ 444 (464)
.+++++||+|||+||++|+.|.|.+.+....... +..|+.||++.+..... ..|++.+ +||++||. +|+.. .+
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~-~~~~~~g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKD-EEFSPDGGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchh-hhcccCCCccceEEEECCCCCCchhhc
Confidence 3689999999999999999999999998776543 34566666666522455 6888876 99999996 66642 22
Q ss_pred ecCCCCCCHHHHHHHHH
Q 012415 445 KYPSERRDVDSLMAFVD 461 (464)
Q Consensus 445 ~y~gg~~~~e~L~~fI~ 461 (464)
...| ..+.+.+.++|+
T Consensus 95 ~~~~-~~~~~~f~~~~~ 110 (117)
T cd02959 95 NKKG-NPNYKYFYSSAA 110 (117)
T ss_pred cCCC-CccccccCCCHH
Confidence 3333 345544444443
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.30 E-value=9.9e-12 Score=118.11 Aligned_cols=89 Identities=21% Similarity=0.332 Sum_probs=73.1
Q ss_pred CCcEEEEEec---CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCC
Q 012415 372 QEPWLVVLYA---PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS 448 (464)
Q Consensus 372 ~k~vlV~Fya---~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~g 448 (464)
+...++.|++ +||++|+.+.|.++++++.+.+-.+.++.+|.+.+ ++++ ++|+|.++||+++|++|+.....+.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-~~l~-~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-KEEA-EKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-HHHH-HHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4556777888 99999999999999999999542355677777788 9999 99999999999999999842246766
Q ss_pred CCCCHHHHHHHHHHh
Q 012415 449 ERRDVDSLMAFVDAL 463 (464)
Q Consensus 449 g~~~~e~L~~fI~~l 463 (464)
..+.++|.+||+.+
T Consensus 97 -~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 97 -IPAGYEFAALIEDI 110 (215)
T ss_pred -cCCHHHHHHHHHHH
Confidence 68888999998764
No 88
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=9.1e-12 Score=128.51 Aligned_cols=101 Identities=34% Similarity=0.691 Sum_probs=87.4
Q ss_pred eecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012415 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 355 ~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~ 434 (464)
..++..+|...+. ..+.+++|.||+|||++|+.+.|.|.+++..+.+ .+.++.|||+.+ .++| ++|+|+++||+.
T Consensus 32 ~~~~~~~~~~~~~--~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~-~~~~-~~y~i~gfPtl~ 106 (383)
T KOG0191|consen 32 SELTLDSFFDFLL--KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEH-KDLC-EKYGIQGFPTLK 106 (383)
T ss_pred hhhhccccHHHhh--ccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhh-HHHH-HhcCCccCcEEE
Confidence 3334444444432 3789999999999999999999999999999998 799999999999 9999 999999999999
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 435 FFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 435 lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
+|..| ..++.|.+ ..+.+.+..|+..
T Consensus 107 ~f~~~-~~~~~~~~-~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 107 VFRPG-KKPIDYSG-PRNAESLAEFLIK 132 (383)
T ss_pred EEcCC-CceeeccC-cccHHHHHHHHHH
Confidence 99999 45899988 7999999999864
No 89
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.29 E-value=2.1e-12 Score=123.49 Aligned_cols=164 Identities=19% Similarity=0.285 Sum_probs=115.7
Q ss_pred HHHHHHHHHHcCC-------cEEEEechhHHHHHH-HHHHHc-----------C-CCeEEEEEeCCCCcHHHHHHHHHHH
Q 012415 101 LEIMDRALEKFGN-------DIAIAFSGAEDVALI-EYAHLT-----------G-RPFRVFSLDTGRLNPETYRFFDEVE 160 (464)
Q Consensus 101 ~eil~~a~~~~~~-------~i~vafSGGKDS~ll-~L~~~~-----------~-~~i~vv~~DTg~~fpeT~~~~~~~~ 160 (464)
.+.|..+...+.. .++.+|.||||++++ +++.+. + -+++.+|+|.+..||+..+|+..-.
T Consensus 64 ~e~i~~a~~i~~~~~~i~~E~~a~SFnggkdc~vll~ll~~~l~~~~~~~~~~p~~~i~~~~~~~~~~fp~~~~fv~~~~ 143 (282)
T KOG2644|consen 64 LEFILKAGGIGPTHDDITQEEMALSFNGGKDCTVLLLLLMRYLRDEYAEKLDQPSTAIPAVYIDVEDSFPELEDFVSVCV 143 (282)
T ss_pred HHHHHHhhccCCccchhhHHHHHHhhCCCCChHHHHHHHHHHhcchhhhhccCCCccccceeecCCCCcccccchHHHHH
Confidence 4445555544332 477888999998766 555441 1 1478999999999999999999999
Q ss_pred HHhCCcEEEE-cCChHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhccCcEEEEeeeccCCcccccCCceeecCC
Q 012415 161 KHFGIRIEYM-FPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDP 239 (464)
Q Consensus 161 ~~~gl~i~~~-~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~~~~~d~ 239 (464)
..|.+.+..+ .+. .... --+..-|+.| ..++++.|+|..+.. - -.+..+++
T Consensus 144 ~~y~~~l~~~~~~~--~lk~----------------~~~~~~~~~~------~~k~i~vg~r~~dp~-g-~~~~~~~~-- 195 (282)
T KOG2644|consen 144 FKYRPQLSRLSGAG--RLKK----------------ALSLFKKVDP------ESKAILVGIRNTDPV-G-EALAPFER-- 195 (282)
T ss_pred HhhccchhhccCcc--hHHH----------------HHHHhhhhhh------hhhhHhhhhhhCCCc-c-ceecceee--
Confidence 9998777533 221 0000 0111112222 345778899988864 2 33332332
Q ss_pred CCcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCCccC
Q 012415 240 VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 296 (464)
Q Consensus 240 ~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~~~ 296 (464)
++..|++++|..|+++|+..|||.|++..++|||-||++||+|+|-.--|.|-
T Consensus 196 ----td~~wp~~~r~~pll~ws~t~vw~~l~~~~~p~c~ly~qg~TslG~~~~t~pn 248 (282)
T KOG2644|consen 196 ----TDSLWPQFMRLLPLLEWSYTDVWDLLREGNLPYCGLYDQGYTSLGGRSNTSPN 248 (282)
T ss_pred ----ccCCchhhhhhcccccchHHHHHHHHhcCCCceeeeecccccccccccCCCCC
Confidence 23477899999999999999999999999999999999999999998888753
No 90
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.2e-11 Score=127.66 Aligned_cols=106 Identities=31% Similarity=0.656 Sum_probs=94.4
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
.+..++..+|+..+. +.+..+||.||+|||++|+.+.|.|++++..+.. ..+.++.+|++.+ ..++ .+++|..+|
T Consensus 145 ~v~~l~~~~~~~~~~--~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~-~~~~-~~~~v~~~P 220 (383)
T KOG0191|consen 145 EVFELTKDNFDETVK--DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH-KSLA-SRLEVRGYP 220 (383)
T ss_pred ceEEccccchhhhhh--ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH-HHHh-hhhcccCCc
Confidence 599999999999775 4678999999999999999999999999999974 5899999999977 8999 999999999
Q ss_pred EEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 432 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 432 Ti~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
|+++|++|.. ...+..+.++.+.|+.|+++.
T Consensus 221 t~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 221 TLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred eEEEecCCCc-ccccccccccHHHHHHHHHhh
Confidence 9999999885 466666689999999999864
No 91
>PTZ00062 glutaredoxin; Provisional
Probab=99.28 E-value=1.9e-11 Score=114.41 Aligned_cols=89 Identities=6% Similarity=0.087 Sum_probs=73.3
Q ss_pred CcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012415 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 437 (464)
Q Consensus 358 ~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~ 437 (464)
+.++|+++++ +..+.++++|+|+||++|+.|.|.+.+|+++|++ +.|++||.+ |+|.++||++||+
T Consensus 5 ~~ee~~~~i~--~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIE--SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred CHHHHHHHHh--cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc----------cCcccceEEEEEE
Confidence 4567788775 2237899999999999999999999999999975 999999966 7899999999999
Q ss_pred CCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 438 KHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 438 ~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+|+. .-.+.| .+..+|.++++++
T Consensus 71 ~g~~-i~r~~G--~~~~~~~~~~~~~ 93 (204)
T PTZ00062 71 NSQL-INSLEG--CNTSTLVSFIRGW 93 (204)
T ss_pred CCEE-EeeeeC--CCHHHHHHHHHHH
Confidence 9994 334444 5788888888764
No 92
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.26 E-value=6.5e-11 Score=108.06 Aligned_cols=107 Identities=16% Similarity=0.302 Sum_probs=83.1
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------- 416 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---------------- 416 (464)
.+..++++.+..... .+++++|+||++||++|+...+.+.++.+++++.++.++.|+++..
T Consensus 45 ~~~~~~g~~~~l~~~---~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~ 121 (173)
T PRK03147 45 VLTDLEGKKIELKDL---KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFP 121 (173)
T ss_pred EeecCCCCEEeHHHc---CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCce
Confidence 344555554432222 4689999999999999999999999999999875689999987643
Q ss_pred -----cHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 012415 417 -----QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 464 (464)
Q Consensus 417 -----~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l~ 464 (464)
+.+++ +.|+|..+|+++++..++.....+.| ..+.+++.+++++++
T Consensus 122 ~~~d~~~~~~-~~~~v~~~P~~~lid~~g~i~~~~~g-~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 122 VAIDKGRQVI-DAYGVGPLPTTFLIDKDGKVVKVITG-EMTEEQLEEYLEKIK 172 (173)
T ss_pred EEECCcchHH-HHcCCCCcCeEEEECCCCcEEEEEeC-CCCHHHHHHHHHHhc
Confidence 15678 89999999999999755543445555 789999999999875
No 93
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.24 E-value=4.4e-11 Score=129.10 Aligned_cols=103 Identities=18% Similarity=0.338 Sum_probs=82.0
Q ss_pred CcchHHHHHhh-cCCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCC
Q 012415 358 NRTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSF 430 (464)
Q Consensus 358 ~~~~f~~~i~~-~~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~I~~~ 430 (464)
+.+++++.++. ..++|+++|+|||+||++|+.+++.. .++.+.++ ++.++++|+++++ .+++ ++|+|.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~-~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALL-KHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHH-HHcCCCCC
Confidence 35677776653 23578999999999999999999975 67888886 4899999998652 6788 89999999
Q ss_pred CEEEEEe-CCCCC-eeecCCCCCCHHHHHHHHHHhC
Q 012415 431 PTILFFP-KHSSK-PIKYPSERRDVDSLMAFVDALR 464 (464)
Q Consensus 431 PTi~lf~-~g~~~-~~~y~gg~~~~e~L~~fI~~l~ 464 (464)
||+++|+ +|+.. ...+.| ..+.+++.+++++++
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G-~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTG-FMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCcccccccC-CCCHHHHHHHHHHhc
Confidence 9999997 56532 235555 789999999999864
No 94
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.22 E-value=5.5e-11 Score=113.02 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=75.3
Q ss_pred cCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012415 357 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 436 (464)
Q Consensus 357 L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf 436 (464)
|+.+..+.+.. ..+...++.||++||++|+.+.+.+++++.... ++.+.++|.+.+ ++++ ++|+|.++||++++
T Consensus 120 L~~~~~~~l~~--~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~-~~~~-~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 120 LSEKTVELLQS--LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANEN-PDLA-EKYGVMSVPKIVIN 193 (215)
T ss_pred CCHHHHHHHHh--cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCC-HHHH-HHhCCccCCEEEEe
Confidence 44444555443 123345555999999999999999999998853 599999999999 9999 99999999999999
Q ss_pred eCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 437 PKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 437 ~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
++|. . +.| ..+.++|.+||.+
T Consensus 194 ~~~~--~--~~G-~~~~~~l~~~l~~ 214 (215)
T TIGR02187 194 KGVE--E--FVG-AYPEEQFLEYILS 214 (215)
T ss_pred cCCE--E--EEC-CCCHHHHHHHHHh
Confidence 7765 2 566 6889999999875
No 95
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.22 E-value=6.1e-11 Score=102.54 Aligned_cols=99 Identities=16% Similarity=0.290 Sum_probs=70.5
Q ss_pred CcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHH-H--HHHHHHhcCCCeEEEEEEcCCCcHHHHHH--------cCC
Q 012415 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGDQKEYAKQ--------KLQ 426 (464)
Q Consensus 358 ~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~Id~d~~~~~l~~~--------~~~ 426 (464)
+++.++...+ ++|++||+|||+||++|+.|.+. | .++++.+.. ++.++++|.+++ ++++ + .|+
T Consensus 4 ~~eal~~Ak~---~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~-~~~~-~~~~~~~~~~~~ 77 (124)
T cd02955 4 GEEAFEKARR---EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREER-PDVD-KIYMNAAQAMTG 77 (124)
T ss_pred CHHHHHHHHH---cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcC-cHHH-HHHHHHHHHhcC
Confidence 3455666555 89999999999999999999874 3 367777655 699999999987 6665 3 368
Q ss_pred CCCCCEEEEEeCCCCCeeecCCC-----CCCHHHHHHHHHHh
Q 012415 427 LGSFPTILFFPKHSSKPIKYPSE-----RRDVDSLMAFVDAL 463 (464)
Q Consensus 427 I~~~PTi~lf~~g~~~~~~y~gg-----~~~~e~L~~fI~~l 463 (464)
+.++||++|+...++ ++...++ ..+...+..+++++
T Consensus 78 ~~G~Pt~vfl~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 78 QGGWPLNVFLTPDLK-PFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCCEEEEECCCCC-EEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 999999999955443 3321121 23445666666654
No 96
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.21 E-value=5.4e-11 Score=94.00 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=59.0
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHH
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 456 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L 456 (464)
|.||++||++|+.+.|.++++++++.. .+.|.+|| + .+.+ .+|++.++||+++ +|+ .+ +.|...+.++|
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~-~~~a-~~~~v~~vPti~i--~G~--~~-~~G~~~~~~~l 71 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---D-MNEI-LEAGVTATPGVAV--DGE--LV-IMGKIPSKEEI 71 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---C-HHHH-HHcCCCcCCEEEE--CCE--EE-EEeccCCHHHH
Confidence 789999999999999999999999976 68887777 3 4557 7899999999999 776 33 44422466788
Q ss_pred HHHHH
Q 012415 457 MAFVD 461 (464)
Q Consensus 457 ~~fI~ 461 (464)
.++++
T Consensus 72 ~~~l~ 76 (76)
T TIGR00412 72 KEILK 76 (76)
T ss_pred HHHhC
Confidence 87763
No 97
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.20 E-value=8.6e-11 Score=123.88 Aligned_cols=89 Identities=16% Similarity=0.297 Sum_probs=71.5
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE----------------------------cCCCcHHHHH
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR----------------------------ADGDQKEYAK 422 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id----------------------------~d~~~~~l~~ 422 (464)
.+++|||+|||+||++|+.++|.+++++++++.+++.|+.|. +|.+ ..++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~-~~la- 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG-GTLA- 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc-HHHH-
Confidence 689999999999999999999999999999975457666553 3344 6788
Q ss_pred HcCCCCCCCEEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 423 QKLQLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 423 ~~~~I~~~PTi~lf~-~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+.|+|.++||++++. +|+ ....+.| ..+.++|.++|+..
T Consensus 133 k~fgV~giPTt~IIDkdGk-IV~~~~G-~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGD-VQRIVKG-SISEAQALALIRNP 172 (521)
T ss_pred HHcCCCCcCeEEEEcCCCe-EEEEEeC-CCCHHHHHHHHHHh
Confidence 899999999998775 555 2344455 79999999999843
No 98
>PHA02125 thioredoxin-like protein
Probab=99.19 E-value=9.5e-11 Score=92.31 Aligned_cols=72 Identities=19% Similarity=0.374 Sum_probs=56.3
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHH
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 455 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~ 455 (464)
+++||++||++|+.+.|.|+++. +.+++||++.+ .+++ ++|+|.++||++ +|+. ...+.|...+..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~-~~l~-~~~~v~~~PT~~---~g~~-~~~~~G~~~~~~~ 68 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEG-VELT-AKHHIRSLPTLV---NTST-LDRFTGVPRNVAE 68 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCC-HHHH-HHcCCceeCeEE---CCEE-EEEEeCCCCcHHH
Confidence 78999999999999999997652 56899999998 9999 999999999997 4542 2355554455566
Q ss_pred HHHHH
Q 012415 456 LMAFV 460 (464)
Q Consensus 456 L~~fI 460 (464)
|++-+
T Consensus 69 l~~~~ 73 (75)
T PHA02125 69 LKEKL 73 (75)
T ss_pred HHHHh
Confidence 66543
No 99
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.18 E-value=2.6e-10 Score=111.41 Aligned_cols=161 Identities=20% Similarity=0.346 Sum_probs=102.1
Q ss_pred HHHHHHHHHHc-----CCcEEEEechhHHHHHH-HHHHHc------CCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcE
Q 012415 101 LEIMDRALEKF-----GNDIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRI 167 (464)
Q Consensus 101 ~eil~~a~~~~-----~~~i~vafSGGKDS~ll-~L~~~~------~~~i~vv~~DTg~~-fpeT~~~~~~~~~~~gl~i 167 (464)
.+.+..++.+| +++|+|++|||+||++| |++.+. +.++.++++|.|.. +.+ ++++++++++|+++
T Consensus 13 ~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lgI~~ 90 (258)
T PRK10696 13 RRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLGVPY 90 (258)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhCCCE
Confidence 34455566665 35799999999999766 777552 23577889999853 433 46789999999999
Q ss_pred EEEcCChHHHHHHHHhcCCCCCCCcchhhh--hhccccchHHHHhc--cCcEEEEeeeccCCcccc-------c-CCcee
Q 012415 168 EYMFPDAVEVQALVRSKGLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTR-------S-EIPVV 235 (464)
Q Consensus 168 ~~~~p~~~~~~~~~~~~g~~~~~~~~~~~C--c~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R-------~-~~~~~ 235 (464)
+++..+.... ... .. . .+...| |...+..-+.+... +.+.+++|...|+.. .. . .+.-+
T Consensus 91 ~v~~~~~~~~---~~~-~~---~-~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~-Et~l~nl~rg~~l~~m 161 (258)
T PRK10696 91 HIEEQDTYSI---VKE-KI---P-EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL-ETLFLNMFYGGKLKAM 161 (258)
T ss_pred EEEEecchhh---hhh-hh---c-cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH-HHHHHHHHhCCccccc
Confidence 8775432111 100 00 0 011234 55555556666555 667899999998853 21 1 01100
Q ss_pred ecCCCCcCccCCCCCeEEEEeCccCcHHHHHHHHHhcCCCcc
Q 012415 236 QVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 236 ~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~n 277 (464)
.+.. ....+++..++||++++..||+.|.+.+++|+.
T Consensus 162 --~~~~---~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~ 198 (258)
T PRK10696 162 --PPKL---LSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPII 198 (258)
T ss_pred --CCee---ecCCCceeEEecCccCCHHHHHHHHHHcCCCEe
Confidence 0100 001134678999999999999999999999874
No 100
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.17 E-value=2e-10 Score=103.10 Aligned_cols=89 Identities=17% Similarity=0.301 Sum_probs=66.1
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-----------HHHHHHcC---CCCCCCEEEEE
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-----------KEYAKQKL---QLGSFPTILFF 436 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~-----------~~l~~~~~---~I~~~PTi~lf 436 (464)
.++..||+|||+||++|++++|.+++++++++ +.|+.|+.|... .+.....| ++.++||++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 35667999999999999999999999999983 566666666430 23331345 78999999999
Q ss_pred eCCCCCee-ecCCCCCCHHHHHHHHHHh
Q 012415 437 PKHSSKPI-KYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 437 ~~g~~~~~-~y~gg~~~~e~L~~fI~~l 463 (464)
+..+.... .+.| ..+.++|.+.|+++
T Consensus 126 D~~G~~i~~~~~G-~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQG-AVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeec-ccCHHHHHHHHHHh
Confidence 76433223 3455 78999999988875
No 101
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.17 E-value=1.7e-10 Score=113.28 Aligned_cols=88 Identities=15% Similarity=0.254 Sum_probs=70.4
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHcCCCCCCCEEEEEeC-C
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPK-H 439 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~----------~~~l~~~~~~I~~~PTi~lf~~-g 439 (464)
.++++||+||++||++|+.+.|.+++++++++ +.|+.|++|.. +..++ ++|+|.++||++||++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCC
Confidence 47899999999999999999999999999984 67777777652 15788 8999999999999987 4
Q ss_pred CCCeeecCCCCCCHHHHHHHHHHh
Q 012415 440 SSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 440 ~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+. ......|..+.++|.+.|..+
T Consensus 241 ~~-v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 241 NQ-FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred CE-EEEEEeCCCCHHHHHHHHHHH
Confidence 53 222222378999999888653
No 102
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=3.9e-11 Score=124.03 Aligned_cols=87 Identities=20% Similarity=0.495 Sum_probs=76.2
Q ss_pred CCCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCC-cHHHHHHcCCC
Q 012415 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGD-QKEYAKQKLQL 427 (464)
Q Consensus 351 ~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Id~d~~-~~~l~~~~~~I 427 (464)
+++|+.|+.++|+..+. .+.+..||.||++|||+|+.+.|.|+++++.+.. .-+.++.|||-.. |..+| ++|+|
T Consensus 38 ~D~ii~Ld~~tf~~~v~--~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC-Ref~V 114 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVF--GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC-REFSV 114 (606)
T ss_pred CCCeEEeehhhhHHHhc--ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH-hhcCC
Confidence 47999999999999886 3457999999999999999999999999999876 3578999999543 38999 99999
Q ss_pred CCCCEEEEEeCCC
Q 012415 428 GSFPTILFFPKHS 440 (464)
Q Consensus 428 ~~~PTi~lf~~g~ 440 (464)
.+|||+.+|+.+.
T Consensus 115 ~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 115 SGYPTLRYFPPDS 127 (606)
T ss_pred CCCceeeecCCcc
Confidence 9999999997663
No 103
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.12 E-value=9.8e-11 Score=99.04 Aligned_cols=87 Identities=25% Similarity=0.481 Sum_probs=62.8
Q ss_pred CCCCcEEEEEecCCChhHHhhHHHHHHHHH---HhcCCCeEEEEEEcCCCc-------------------HHHHHHcCCC
Q 012415 370 HRQEPWLVVLYAPWCQFCQAMEGSYVELAD---KLAGNGVKVGKFRADGDQ-------------------KEYAKQKLQL 427 (464)
Q Consensus 370 ~~~k~vlV~Fya~wC~~C~~~~p~~~~la~---~~~~~~v~~~~Id~d~~~-------------------~~l~~~~~~I 427 (464)
.++++++|+|+++||++|+.+.+.+.+..+ .+.. ++.++.++++... .++. +.|+|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELA-QRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHH-HHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHH-HHcCC
Confidence 468999999999999999999999986443 3433 6888888887541 3588 89999
Q ss_pred CCCCEEEEEe-CCCCCeeecCCCCCCHHHHHHHH
Q 012415 428 GSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 428 ~~~PTi~lf~-~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
.++||+++++ +|+. ...+.| ..+.++|.+++
T Consensus 81 ~gtPt~~~~d~~G~~-v~~~~G-~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKI-VYRIPG-YLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCE-EEEEES-S--HHHHHHHH
T ss_pred CccCEEEEEcCCCCE-EEEecC-CCCHHHHHhhC
Confidence 9999999996 5552 445566 78999998875
No 104
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.11 E-value=1e-09 Score=106.84 Aligned_cols=151 Identities=18% Similarity=0.277 Sum_probs=101.9
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH
Q 012415 102 EIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL 180 (464)
Q Consensus 102 eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~ 180 (464)
+.|+..++.++. ++|+||||.||+++ +++.+.+.++..+++|.+...++-.+.++++++++|++++++.-+. +...
T Consensus 3 ~~l~~~l~~~~~-vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~--~~~~ 79 (252)
T TIGR00268 3 ENLRNFLKEFKK-VLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDK--MINP 79 (252)
T ss_pred HHHHHHHHhcCC-EEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHH--HHHH
Confidence 567777888765 99999999999776 7887778789999999987777888999999999999988764321 1111
Q ss_pred HHhcCCCCCCCcchhhhhhccccchH---HHHhc--cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEE
Q 012415 181 VRSKGLFSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN 255 (464)
Q Consensus 181 ~~~~g~~~~~~~~~~~Cc~~~Kv~Pl---~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~ 255 (464)
...+ .... |..+|..-+ .+..+ +.+.+++|...+|-...|..+..... .+ . .+
T Consensus 80 ~~~n--------~~~~-c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~~----------~~-~--~~ 137 (252)
T TIGR00268 80 FRAN--------VEER-CYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVKE----------FN-G--VS 137 (252)
T ss_pred HHhC--------CCcc-cchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHHH----------cC-C--CC
Confidence 1111 1112 333333222 22222 56789999988875323322221110 01 1 38
Q ss_pred eCcc--CcHHHHHHHHHhcCCCcc
Q 012415 256 PVAN--VKGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 256 PI~d--Wt~~DVw~yi~~~~lp~n 277 (464)
|+++ ++..||..|.++.|||+.
T Consensus 138 PL~~~~l~K~eIr~la~~~gl~~~ 161 (252)
T TIGR00268 138 PWAEFGITKKEIREIAKSLGISFP 161 (252)
T ss_pred cchhcCCCHHHHHHHHHHcCCCcc
Confidence 9976 799999999999999853
No 105
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.10 E-value=5e-10 Score=97.61 Aligned_cols=69 Identities=19% Similarity=0.398 Sum_probs=57.7
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCc-----------------------HHHHHHcC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQ-----------------------KEYAKQKL 425 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Id~d~~~-----------------------~~l~~~~~ 425 (464)
.++++||+||++||++|+.+.|.+.++.+++.+ .++.++.|++|.+. ..++ +.|
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN-RTF 95 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH-HHc
Confidence 578999999999999999999999999998865 26788888877541 2466 789
Q ss_pred CCCCCCEEEEEe-CCC
Q 012415 426 QLGSFPTILFFP-KHS 440 (464)
Q Consensus 426 ~I~~~PTi~lf~-~g~ 440 (464)
+|.++||+++|+ +|+
T Consensus 96 ~v~~~P~~~lid~~G~ 111 (131)
T cd03009 96 KIEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCCEEEEECCCCC
Confidence 999999999997 554
No 106
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.08 E-value=7e-10 Score=104.26 Aligned_cols=142 Identities=19% Similarity=0.262 Sum_probs=96.8
Q ss_pred EEEEechhHHHHHH-HHHHHcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCCc
Q 012415 115 IAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 192 (464)
Q Consensus 115 i~vafSGGKDS~ll-~L~~~~~~-~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~ 192 (464)
|+|++|||+||+++ +++.+... ++..+++|+|....+..++++++++++|++++++...... .........
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~~~~~~------ 73 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEFAKNPP------ 73 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHHhcCCC------
Confidence 57899999999876 77776543 7899999999888899999999999999998877543211 111111110
Q ss_pred chhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCc--cCcHHHHHHH
Q 012415 193 GHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA--NVKGNDIWNF 268 (464)
Q Consensus 193 ~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~--dWt~~DVw~y 268 (464)
..-..|+.....-+.+..+ |.+++++|...+|....|..+... . ...-+.||+ .++..||.+|
T Consensus 74 ~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~~~~~~--~-----------~~~iirPL~~~~~~K~ei~~~ 140 (202)
T cd01990 74 DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRPGLKAL--R-----------ELGVRSPLAEAGLGKAEIREL 140 (202)
T ss_pred CccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccChHHHHH--H-----------HcCCcCchhhcCCCHHHHHHH
Confidence 1112355444555555554 557899999888864222211110 0 122489999 5999999999
Q ss_pred HHhcCCCc
Q 012415 269 LRTMDVPI 276 (464)
Q Consensus 269 i~~~~lp~ 276 (464)
.+++|+|+
T Consensus 141 a~~~gl~~ 148 (202)
T cd01990 141 ARELGLPT 148 (202)
T ss_pred HHHcCCCC
Confidence 99999988
No 107
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.08 E-value=3.4e-10 Score=86.79 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=51.4
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEE
Q 012415 375 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 375 vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~l 435 (464)
-++.||++||++|+.+.+.++++++.+. ++.+..+|++++ ++++ ++|++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~-~~l~-~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEF-PDLA-DEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccC-HhHH-HHcCCcccCEEEE
Confidence 3678999999999999999999987654 599999999999 8999 9999999999865
No 108
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.07 E-value=7.2e-10 Score=98.46 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=60.1
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-------CCeEEEEEEcCCCc------------------------HH
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-------NGVKVGKFRADGDQ------------------------KE 419 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-------~~v~~~~Id~d~~~------------------------~~ 419 (464)
++++++|+|||+||++|+.++|.+.++.+++++ +++.++.|+.|.+. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 579999999999999999999999998887654 25899999877541 14
Q ss_pred HHHHcCCCCCCCEEEEEeCCCCCeeecCC
Q 012415 420 YAKQKLQLGSFPTILFFPKHSSKPIKYPS 448 (464)
Q Consensus 420 l~~~~~~I~~~PTi~lf~~g~~~~~~y~g 448 (464)
++ +.|+|.++||++++...++ .+...|
T Consensus 104 l~-~~y~v~~iPt~vlId~~G~-Vv~~~~ 130 (146)
T cd03008 104 LE-AQFSVEELPTVVVLKPDGD-VLAANA 130 (146)
T ss_pred HH-HHcCCCCCCEEEEECCCCc-EEeeCh
Confidence 66 7899999999999964432 454443
No 109
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.07 E-value=7e-10 Score=97.03 Aligned_cols=75 Identities=16% Similarity=0.344 Sum_probs=59.8
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCc------------------------HHHHHHc
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQ------------------------KEYAKQK 424 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~Id~d~~~------------------------~~l~~~~ 424 (464)
+++++||+||++||++|+.++|.++++.+.+++. ++.++.|+++.+. ..+. +.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~ 94 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE-KQ 94 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH-HH
Confidence 5799999999999999999999999999998763 6888888877641 2455 67
Q ss_pred CCCCCCCEEEEEeCCCCCeeecC
Q 012415 425 LQLGSFPTILFFPKHSSKPIKYP 447 (464)
Q Consensus 425 ~~I~~~PTi~lf~~g~~~~~~y~ 447 (464)
|+|.++||+++++++++ .+...
T Consensus 95 ~~v~~iPt~~lid~~G~-iv~~~ 116 (132)
T cd02964 95 FKVEGIPTLVVLKPDGD-VVTTN 116 (132)
T ss_pred cCCCCCCEEEEECCCCC-EEchh
Confidence 99999999999974442 44443
No 110
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.06 E-value=1.1e-09 Score=101.68 Aligned_cols=87 Identities=16% Similarity=0.301 Sum_probs=66.4
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------HHHHHHcCCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------KEYAKQKLQLG 428 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~----------------------~~l~~~~~~I~ 428 (464)
.+++++|+||++||++|+.++|.+.++.++ ++.|+.|+.+++. ..+. +.|+|.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLG-LDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHH-HhcCCC
Confidence 588999999999999999999999988652 5888888865541 1244 578999
Q ss_pred CCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 429 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 429 ~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
++|+.++++..++....+.| ..+.++|.+.|+.+
T Consensus 142 ~~P~t~vid~~G~i~~~~~G-~~~~~~l~~~i~~~ 175 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAG-DLNPRVWESEIKPL 175 (185)
T ss_pred cCCeEEEECCCceEEEEEec-CCCHHHHHHHHHHH
Confidence 99988888644433455555 78888888888764
No 111
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.04 E-value=1.4e-09 Score=99.74 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=65.1
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------cHHHHHHcCCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG 428 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~----------------------~~~l~~~~~~I~ 428 (464)
.+++++|+||++||++|+.+.|.++++.+. ++.++.|+.+.. +..+. +.|++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~-~~~~v~ 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLG-LDLGVY 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchH-HhcCCe
Confidence 578999999999999999999999988653 466666664322 03566 688999
Q ss_pred CCCEEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 429 SFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 429 ~~PTi~lf~-~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
++|+.+++. +|+ ....+.| ..+.++|.++|+++
T Consensus 137 ~~P~~~~id~~G~-i~~~~~G-~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 137 GAPETFLVDGNGV-ILYRHAG-PLNNEVWTEGFLPA 170 (173)
T ss_pred eCCeEEEEcCCce-EEEEEec-cCCHHHHHHHHHHH
Confidence 999877775 555 2444555 68999999988764
No 112
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.04 E-value=1.5e-09 Score=89.02 Aligned_cols=68 Identities=24% Similarity=0.448 Sum_probs=56.6
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCc------------------------HHHHHHcCC
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQ------------------------KEYAKQKLQ 426 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~-~~~v~~~~Id~d~~~------------------------~~l~~~~~~ 426 (464)
+|+++|+|||+||++|+.+.|.+.++.++++ +.++.|+.|+.|.+. ..+. +.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL-KKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH-HHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH-HHCC
Confidence 5899999999999999999999999999999 347999999988651 3467 8899
Q ss_pred CCCCCEEEEEeCCC
Q 012415 427 LGSFPTILFFPKHS 440 (464)
Q Consensus 427 I~~~PTi~lf~~g~ 440 (464)
|.++|+++++...+
T Consensus 80 i~~iP~~~lld~~G 93 (95)
T PF13905_consen 80 INGIPTLVLLDPDG 93 (95)
T ss_dssp -TSSSEEEEEETTS
T ss_pred CCcCCEEEEECCCC
Confidence 99999999997654
No 113
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.04 E-value=1.1e-09 Score=94.84 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=60.4
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-----------------------CCCcHHHHHHcCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-----------------------DGDQKEYAKQKLQL 427 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~-----------------------d~~~~~l~~~~~~I 427 (464)
.+++++|+||++||++|+.+.|.++++.+.+ ++.|+.|+. |.+ ..++ +.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~-~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-GRVG-IDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-chHH-HhcCC
Confidence 4789999999999999999999999998876 366666663 333 5778 78999
Q ss_pred CCCCEEEEEe-CCCCCeeecCCCCCCHHHH
Q 012415 428 GSFPTILFFP-KHSSKPIKYPSERRDVDSL 456 (464)
Q Consensus 428 ~~~PTi~lf~-~g~~~~~~y~gg~~~~e~L 456 (464)
.++|+.+++. +|+ ....+.| ..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~-v~~~~~G-~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGI-IRYKHVG-PLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCce-EEEEEec-cCChHhc
Confidence 9999777775 554 3445555 5776654
No 114
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.02 E-value=1.5e-09 Score=102.59 Aligned_cols=154 Identities=21% Similarity=0.315 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012415 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (464)
Q Consensus 99 ~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~-~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 176 (464)
+.++.|+.++...+ +++||||||.||++| .++.+ .|.++..+++|+.+..+.-++-+..+++.+|++.+++.-..-.
T Consensus 5 ~Kl~~l~~~ik~~~-kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~ 83 (269)
T COG1606 5 SKLERLKKAIKEKK-KVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD 83 (269)
T ss_pred HHHHHHHHHHhhcC-eEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc
Confidence 45677888888876 599999999999877 66645 6788999999999999989999999999999998776322111
Q ss_pred HHHHHHhcCCCCCCCcchhhhhhccccch---H-HHHhc-cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCe
Q 012415 177 VQALVRSKGLFSFYEDGHQECCRVRKVRP---L-RRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251 (464)
Q Consensus 177 ~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~P---l-~r~l~-~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~ 251 (464)
+.+-.+ +..-|+.+|..- + ..+.+ |+++++.|+..+|..+.|-.+....-..
T Consensus 84 ----------~~~~~n-~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RPG~rA~kE~g------------ 140 (269)
T COG1606 84 ----------PEFKEN-PENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRPGLRALKELG------------ 140 (269)
T ss_pred ----------hhhccC-CCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCcchhhHHhcC------------
Confidence 111111 112244444332 2 33333 8999999999999875555544432221
Q ss_pred EEEEeCccC--cHHHHHHHHHhcCCCcc
Q 012415 252 VKWNPVANV--KGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 252 ~k~~PI~dW--t~~DVw~yi~~~~lp~n 277 (464)
-..|+++. +.++|-.|.+..|+++.
T Consensus 141 -i~sPl~e~gitk~eIre~a~~lgl~~~ 167 (269)
T COG1606 141 -IRSPLAEFGITKKEIREIAKSLGLPTW 167 (269)
T ss_pred -CCChHHHhCCcHHHHHHHHHHcCCCcc
Confidence 24688764 99999999999999776
No 115
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.02 E-value=1.1e-09 Score=101.42 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=89.5
Q ss_pred cEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~----~~~i~vv~~DTg~~f--peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 186 (464)
+|+||+||||||++| +++... +..+.++++|.|... .+-.++++++++.+|+++.+...+. ..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~-------~~--- 70 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDE-------DR--- 70 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--C-------HC---
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeee-------ee---
Confidence 488999999999766 766653 447899999999752 3556899999999999998875443 00
Q ss_pred CCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCC--CCcCc--cCCCCCeEEEEeCccC
Q 012415 187 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEGL--EGGVGSLVKWNPVANV 260 (464)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~--~~~~~--~~~~~~~~k~~PI~dW 260 (464)
....+...||+...-.-|.+... +.+.+++|.-.|+-.. -.-+..+.... .+.+. .....++..++||++.
T Consensus 71 --~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~E-T~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~ 147 (182)
T PF01171_consen 71 --KKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAE-TFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYV 147 (182)
T ss_dssp --CTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHH-HHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS
T ss_pred --cccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHH-HHHHHHHHhccchhhccccccccccCcccCCcchhC
Confidence 11223455676665566666665 4468999998887431 11111110000 00000 0001347789999999
Q ss_pred cHHHHHHHHHhcCCCcch
Q 012415 261 KGNDIWNFLRTMDVPINS 278 (464)
Q Consensus 261 t~~DVw~yi~~~~lp~np 278 (464)
+++||-.|.+.+++||-.
T Consensus 148 ~k~ei~~~~~~~~i~~~~ 165 (182)
T PF01171_consen 148 SKDEIRAYAKENGIPYVE 165 (182)
T ss_dssp -HHHHHHHHHHTT-SSBS
T ss_pred CHHHHHHHHHHCCCcEEE
Confidence 999999999999999844
No 116
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.01 E-value=1.9e-09 Score=92.58 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=68.7
Q ss_pred eecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE---------------------c
Q 012415 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR---------------------A 413 (464)
Q Consensus 355 ~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id---------------------~ 413 (464)
..++++.+..... .+++++|+||++||++|+.+.|.+.++++.+. +..+.+| .
T Consensus 6 ~~~~g~~~~~~~~---~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd03011 6 TTLDGEQFDLESL---SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVIN 79 (123)
T ss_pred ecCCCCEeeHHHh---CCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEE
Confidence 3344445544433 46899999999999999999999999987742 3222222 1
Q ss_pred CCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHH
Q 012415 414 DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMA 458 (464)
Q Consensus 414 d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~ 458 (464)
+.+ .+++ +.|+|.++|+++++.+++ ....+.| ..+.++|.+
T Consensus 80 d~~-~~~~-~~~~i~~~P~~~vid~~g-i~~~~~g-~~~~~~~~~ 120 (123)
T cd03011 80 DPD-GVIS-ARWGVSVTPAIVIVDPGG-IVFVTTG-VTSEWGLRL 120 (123)
T ss_pred CCC-cHHH-HhCCCCcccEEEEEcCCC-eEEEEec-cCCHHHHHh
Confidence 333 5788 899999999999998777 4556666 688888865
No 117
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=1.8e-09 Score=107.48 Aligned_cols=164 Identities=17% Similarity=0.215 Sum_probs=104.8
Q ss_pred HHHHHHHc---CCcEEEEechhHHHHHH-HHHHHcC--CCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChH
Q 012415 104 MDRALEKF---GNDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAV 175 (464)
Q Consensus 104 l~~a~~~~---~~~i~vafSGGKDS~ll-~L~~~~~--~~i~vv~~DTg~~f--peT~~~~~~~~~~~gl~i~~~~p~~~ 175 (464)
+.+.+..+ +.+|+||+||||||+++ +++.+.. .++.++++|.|..- ..-.++++++++.+++++++..-...
T Consensus 10 v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 89 (298)
T COG0037 10 VKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDD 89 (298)
T ss_pred HHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEee
Confidence 34444443 36799999999999766 8887765 47889999999764 67788999999999987655432211
Q ss_pred HHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCCC-----CcCccCCC
Q 012415 176 EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPV-----FEGLEGGV 248 (464)
Q Consensus 176 ~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~-----~~~~~~~~ 248 (464)
... ... +..+...-|...+-.-+.+... |.+.++||..+|+.. .-.-+.....+.. ........
T Consensus 90 ~~~-----~~~---~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~-et~lm~l~~g~~~~~l~~~~~~~~~~ 160 (298)
T COG0037 90 LGR-----ETL---DGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA-ETFLMNLLRGSGLRGLRGMPPKRPFE 160 (298)
T ss_pred ccc-----ccc---CCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH-HHHHHHHHcCcHhhHHhhCCcccccC
Confidence 100 000 0011222366666666776666 557999999998864 2111111111100 00001011
Q ss_pred CCeEEEEeCccCcHHHHHHHHHhcCCCc
Q 012415 249 GSLVKWNPVANVKGNDIWNFLRTMDVPI 276 (464)
Q Consensus 249 ~~~~k~~PI~dWt~~DVw~yi~~~~lp~ 276 (464)
++...++|++.++..+|..|...+++||
T Consensus 161 ~~~~~iRPL~~~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 161 GGLLIIRPLLYVREKEIELYAKEKGLPY 188 (298)
T ss_pred CCCeeeeecccCCHHHHHHHHHHcCCCE
Confidence 1226899999999999999999999976
No 118
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.96 E-value=7.3e-09 Score=89.89 Aligned_cols=104 Identities=11% Similarity=0.093 Sum_probs=85.1
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEec--CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 430 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya--~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~ 430 (464)
....++..+++.++. .....+|.|-. --++.+....=++++|+++|.+.++.|++||+|.+ ++++ .+|+|.++
T Consensus 18 g~~~~~~~~~~~~~~---~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-~~LA-~~fgV~si 92 (132)
T PRK11509 18 GWTPVSESRLDDWLT---QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIG-DRFGVFRF 92 (132)
T ss_pred CCCccccccHHHHHh---CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-HHHH-HHcCCccC
Confidence 445566788899886 55555555553 35788999999999999999754699999999999 9999 99999999
Q ss_pred CEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 431 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 431 PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
||++||++|+ .+....|.++.+++.++|+++
T Consensus 93 PTLl~FkdGk--~v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 93 PATLVFTGGN--YRGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred CEEEEEECCE--EEEEEeCcCCHHHHHHHHHHH
Confidence 9999999999 454443478999999999875
No 119
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.93 E-value=5e-09 Score=87.41 Aligned_cols=69 Identities=26% Similarity=0.479 Sum_probs=59.9
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------cHHHHHHcCCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG 428 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~----------------------~~~l~~~~~~I~ 428 (464)
.+++++|+||++||++|+...+.+.++.+++...++.++.|+++.+ ...+. +.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELA-KAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHH-HhcCcC
Confidence 3789999999999999999999999999999755799999999873 14678 899999
Q ss_pred CCCEEEEEeCCC
Q 012415 429 SFPTILFFPKHS 440 (464)
Q Consensus 429 ~~PTi~lf~~g~ 440 (464)
++|+++++..++
T Consensus 97 ~~P~~~l~d~~g 108 (116)
T cd02966 97 GLPTTFLIDRDG 108 (116)
T ss_pred ccceEEEECCCC
Confidence 999999996444
No 120
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.92 E-value=2.3e-08 Score=91.24 Aligned_cols=140 Identities=16% Similarity=0.254 Sum_probs=89.6
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCCc
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 192 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~ 192 (464)
+++|++|||+||+++ +++.+.+.++..+++|.|....+-.++++++++.+| +...+ |..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~-~~~------------------ 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYV-PAR------------------ 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcCCcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEE-eCc------------------
Confidence 478999999999877 788887878999999998764444589999999999 22221 100
Q ss_pred chhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccC-Cc-eee-cCCCCcCccCCCCCeEEEEeCccCcHHHHHH
Q 012415 193 GHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSE-IP-VVQ-VDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 267 (464)
Q Consensus 193 ~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~-~~-~~~-~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~ 267 (464)
......-+.+... +.+.+++|...+|.. .... .+ .++ .+... . .....++.-++||++|+..||.+
T Consensus 61 ------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~~v~~PL~~~~K~ei~~ 131 (169)
T cd01995 61 ------NLIFLSIAAAYAEALGAEAIIIGVNAEDYS-GYPDCRPEFIEAMNKAL-N-LGTENGIKIHAPLIDLSKAEIVR 131 (169)
T ss_pred ------CHHHHHHHHHHHHHCCCCEEEEeeccCccC-CCCCCCHHHHHHHHHHH-H-hhcCCCeEEEeCcccCCHHHHHH
Confidence 0000111222222 667899999998842 1110 00 000 00000 0 00112455689999999999999
Q ss_pred HHHhcCCCcchhhhc
Q 012415 268 FLRTMDVPINSLHSQ 282 (464)
Q Consensus 268 yi~~~~lp~npLy~~ 282 (464)
|++++++|+..-|.+
T Consensus 132 ~~~~~g~~~~~s~sC 146 (169)
T cd01995 132 LGGELGVPLELTWSC 146 (169)
T ss_pred HHhHcCCChhheeec
Confidence 999999999888765
No 121
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.90 E-value=5.7e-09 Score=120.06 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=72.2
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc---C------------------------CCcHHHHHH
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA---D------------------------GDQKEYAKQ 423 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~---d------------------------~~~~~l~~~ 423 (464)
.++++||+|||+||++|+.+.|.|+++.++|++.++.|+.|.. | .+ ..+. +
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~-~~~~-~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGD-MYLW-R 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCc-hHHH-H
Confidence 5899999999999999999999999999999876688887742 2 12 4677 7
Q ss_pred cCCCCCCCEEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 424 KLQLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 424 ~~~I~~~PTi~lf~-~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+|+|.++||+++|. +|+. ...+.| ....+.|.++|+++
T Consensus 497 ~~~V~~iPt~ilid~~G~i-v~~~~G-~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKL-IAQLSG-EGHRKDLDDLVEAA 535 (1057)
T ss_pred hcCCCccceEEEECCCCeE-EEEEec-ccCHHHHHHHHHHH
Confidence 89999999999994 6652 344555 78889999988764
No 122
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.90 E-value=1.1e-08 Score=95.25 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=62.7
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------------------CcHHHHHHcCCCCCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------------------DQKEYAKQKLQLGSFP 431 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~-------------------~~~~l~~~~~~I~~~P 431 (464)
.+++++|+||++||++|+.+.|.+.++.+.+. +.++.|+.+. ...++. +.|++..+|
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~y~v~~~P 148 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIG-MAFQVGKIP 148 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHH-HhccCCccc
Confidence 57899999999999999999999999887653 3344443211 014677 789999999
Q ss_pred EEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 012415 432 TILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 464 (464)
Q Consensus 432 Ti~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l~ 464 (464)
+.+++++.+ .+.+.+.....+.+.+.+++++
T Consensus 149 ~~~lID~~G--~I~~~g~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 149 YGVLLDQDG--KIRAKGLTNTREHLESLLEADR 179 (189)
T ss_pred eEEEECCCC--eEEEccCCCCHHHHHHHHHHHH
Confidence 998886544 2444453346677777777653
No 123
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.88 E-value=8.7e-09 Score=83.93 Aligned_cols=76 Identities=9% Similarity=0.074 Sum_probs=63.1
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCC
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 451 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~ 451 (464)
+..-+..|+++||++|....+.++++++.+. ++.+..+|.+.. ++++ ++|+|.++||+++ +|+ ..+.| ..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~-~e~a-~~~~V~~vPt~vi--dG~---~~~~G-~~ 81 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALF-QDEV-EERGIMSVPAIFL--NGE---LFGFG-RM 81 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhC-HHHH-HHcCCccCCEEEE--CCE---EEEeC-CC
Confidence 4557888999999999999999999998875 499999999999 8999 9999999999964 676 23345 56
Q ss_pred CHHHHH
Q 012415 452 DVDSLM 457 (464)
Q Consensus 452 ~~e~L~ 457 (464)
+.+++.
T Consensus 82 ~~~e~~ 87 (89)
T cd03026 82 TLEEIL 87 (89)
T ss_pred CHHHHh
Confidence 666654
No 124
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.88 E-value=1.3e-08 Score=93.30 Aligned_cols=83 Identities=18% Similarity=0.330 Sum_probs=64.5
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------cHHHHHHcCCC--CCCCEEEEEeCCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------QKEYAKQKLQL--GSFPTILFFPKHSS 441 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~------------~~~l~~~~~~I--~~~PTi~lf~~g~~ 441 (464)
||+||++||++|+++.|.++++++++ ++.++.|++|.. +..+. +.|++ .++||.++++..++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~-~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQGDTAFPEALPAPPDVMQ-TFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCCCCCCceEecCchhHHH-HHhCCCCCCCCeEEEEeCCCc
Confidence 78899999999999999999999998 377777776643 12355 68884 69999999965554
Q ss_pred Ce-eecCCCCCCHHHHHHHHHHh
Q 012415 442 KP-IKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 442 ~~-~~y~gg~~~~e~L~~fI~~l 463 (464)
.. ..+.| ..+.++|.+.|+++
T Consensus 149 i~~~~~~G-~~~~~~L~~~I~~l 170 (181)
T PRK13728 149 EALPLLQG-ATDAAGFMARMDTV 170 (181)
T ss_pred EEEEEEEC-CCCHHHHHHHHHHH
Confidence 32 24666 78999998888764
No 125
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.88 E-value=1.8e-08 Score=92.70 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=85.9
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHH-----HHHHHHHHHHHhCCcE--EEEcCChHHHHHHHHhcC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPE-----TYRFFDEVEKHFGIRI--EYMFPDAVEVQALVRSKG 185 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpe-----T~~~~~~~~~~~gl~i--~~~~p~~~~~~~~~~~~g 185 (464)
+++|+||||+||+++ +++.+.+.++..+|+|.|....+ ..+..+.+ ..|++++ .++..... ........+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g~~v~av~~d~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~-~~~~~~~~~ 78 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFTSEKAREKVEDLARKL-ARYSPGHKLVVIIFTFF-VQKEIYGYG 78 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcCCeEEEEEEeCCCCCchHHHHHHHHHHHHH-HHhCCCCceEEEeCcHH-HHHHHHHhC
Confidence 378999999999877 78888888899999999976443 33333333 5676544 44443321 111111122
Q ss_pred CCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcc-cccCCceeecCCCCcCccCCCCCeEEEEeCccCcH
Q 012415 186 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG 262 (464)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~-~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~ 262 (464)
.+ ...... |......-+..... +.+.+++|...++-.. .+.++.. .. ..+++..+.|+++++.
T Consensus 79 ~~---~~~c~~-Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~--~~--------~~~~~~i~rPl~~~~K 144 (177)
T cd01712 79 KE---KYRCIL-CKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLV--IS--------SGTDLPILRPLIGFDK 144 (177)
T ss_pred CC---ccHhHH-HHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhh--cc--------cCCCCeEECCCCCCCH
Confidence 11 111122 33222222222222 6679999998877431 1222211 11 1134678999999999
Q ss_pred HHHHHHHHhcCCC
Q 012415 263 NDIWNFLRTMDVP 275 (464)
Q Consensus 263 ~DVw~yi~~~~lp 275 (464)
.||+.|.+.+++|
T Consensus 145 ~eI~~~a~~~gl~ 157 (177)
T cd01712 145 EEIIGIARRIGTY 157 (177)
T ss_pred HHHHHHHHHcCCc
Confidence 9999999999985
No 126
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.88 E-value=8.9e-09 Score=87.19 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=52.8
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHcCCCCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGSF 430 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------~~~l~~~~~~I~~~ 430 (464)
.+++++|+||++||++|+.+.|.++++.+.+.+ ++.++.+. +.+ +.++. +.|++..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELG-MAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHH-hhcCCCCc
Confidence 378999999999999999999999999988865 56666552 111 13455 56777778
Q ss_pred CEEEEEeCCCCCeeecCC
Q 012415 431 PTILFFPKHSSKPIKYPS 448 (464)
Q Consensus 431 PTi~lf~~g~~~~~~y~g 448 (464)
|+++++++.+ .+.|.|
T Consensus 97 P~~~vid~~G--~v~~~~ 112 (114)
T cd02967 97 PYAVLLDEAG--VIAAKG 112 (114)
T ss_pred CeEEEECCCC--eEEecc
Confidence 8888886443 244443
No 127
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.87 E-value=2.5e-08 Score=84.93 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=74.9
Q ss_pred hHHHHHhh-cCCCCcEEEEEecCCChhHHhhHHH-H--HHHHHHhcCCCeEEEEEEcCCC-cHHHHHHcCCCCCCCEEEE
Q 012415 361 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 361 ~f~~~i~~-~~~~k~vlV~Fya~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~Id~d~~-~~~l~~~~~~I~~~PTi~l 435 (464)
+|++.++. ..++|+++|+|+++||++|+.|... | .++.+.++. ++.+.++|++.. ..+++ ..|++.++|++++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~~ 82 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFL-QSYKVDKYPHIAI 82 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHH-HHhCccCCCeEEE
Confidence 44444433 2368999999999999999999774 4 467777765 688999998752 26788 8999999999999
Q ss_pred EeC-CCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 436 FPK-HSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 436 f~~-g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+.. ++.......| ..+.++|...|++.
T Consensus 83 i~~~~g~~l~~~~G-~~~~~~f~~~L~~~ 110 (114)
T cd02958 83 IDPRTGEVLKVWSG-NITPEDLLSQLIEF 110 (114)
T ss_pred EeCccCcEeEEEcC-CCCHHHHHHHHHHH
Confidence 965 3332444445 79999998888753
No 128
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.84 E-value=1.4e-08 Score=88.06 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=59.4
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----C---------------------cHHHHHHc
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----D---------------------QKEYAKQK 424 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~-----~---------------------~~~l~~~~ 424 (464)
+++++||+||++||++|+...|.++++.+++++.++.++.|+.+. . +..+. +.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~-~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATW-RA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHH-HH
Confidence 468999999999999999999999999999987678888886521 1 13466 67
Q ss_pred CCCCCCCEEEEEeCCCCCeeecC
Q 012415 425 LQLGSFPTILFFPKHSSKPIKYP 447 (464)
Q Consensus 425 ~~I~~~PTi~lf~~g~~~~~~y~ 447 (464)
|++.++|+++++.+.++....+.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEe
Confidence 89999999999964443233333
No 129
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.84 E-value=5.6e-08 Score=103.75 Aligned_cols=167 Identities=13% Similarity=0.179 Sum_probs=104.3
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 189 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~-~~~i~vv~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~ 189 (464)
++++|++|||+||+++ +++.+. +.++..+|+|+|.. -+|..++.+.+++.+|++++++.-... +.. ...|. ..
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~-f~~--~l~g~-~~ 291 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDR-FLS--ALAGV-TD 291 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHH-HHH--hccCC-CC
Confidence 5699999999999876 777664 77899999999974 467877777888999999988743311 111 11232 11
Q ss_pred CCcchhhhhhccccchHHHHhc---cCcEEEEeeeccCCcccccCCceeecCCCCcCccCC--CCCeEEEEeCccCcHHH
Q 012415 190 YEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGG--VGSLVKWNPVANVKGND 264 (464)
Q Consensus 190 ~~~~~~~Cc~~~Kv~Pl~r~l~---~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~--~~~~~k~~PI~dWt~~D 264 (464)
++.....||..+. .-+.+..+ +.+.+++|...++-..+|..-+.-.. .++.+..+- ....-.+.||.+++.+|
T Consensus 292 ~~~~r~~~~~~~~-~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~~~~~i-k~~~~l~Gl~~~~~~~ii~PL~~l~K~E 369 (511)
T PRK00074 292 PEEKRKIIGREFI-EVFEEEAKKLGGVKFLAQGTLYPDVIESGGTKKAATI-KSHHNVGGLPEDMKLKLVEPLRELFKDE 369 (511)
T ss_pred cHHhhhhhhHHHH-HHHHHHHHHccCCCEEEECCCcchhhhhcCCCCcccc-ccccCccCcChhHhcccccchhhcCHHH
Confidence 2222223433332 34444442 55689999977665323421000000 000010000 01234789999999999
Q ss_pred HHHHHHhcCCCcchhhhcCCc
Q 012415 265 IWNFLRTMDVPINSLHSQGYI 285 (464)
Q Consensus 265 Vw~yi~~~~lp~npLy~~Gy~ 285 (464)
|-.|.+.++||+.-.+++-|+
T Consensus 370 Ir~~a~~~gLp~~~~~~~p~p 390 (511)
T PRK00074 370 VRKLGLELGLPEEIVYRHPFP 390 (511)
T ss_pred HHHHHHHcCCCHHHhCCCCCC
Confidence 999999999999888887555
No 130
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.83 E-value=1.3e-08 Score=106.76 Aligned_cols=99 Identities=18% Similarity=0.332 Sum_probs=77.3
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHH-HHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEEE
Q 012415 361 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV-ELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFF 436 (464)
Q Consensus 361 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~-~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~I~~~PTi~lf 436 (464)
.+++.+. .+++|+|+|+|||+||-.||.+++..- +.....+-.++...++|.++++ .++- ++|++-+.|++++|
T Consensus 464 ~L~~~la-~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lL-k~~~~~G~P~~~ff 541 (569)
T COG4232 464 ELDQALA-EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALL-KRLGVFGVPTYLFF 541 (569)
T ss_pred HHHHHHH-hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHH-HHcCCCCCCEEEEE
Confidence 7777776 344569999999999999999998764 3333333346999999999986 4556 79999999999999
Q ss_pred e-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 437 P-KHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 437 ~-~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
. +|++ +....| ..+.+.+.+++++.
T Consensus 542 ~~~g~e-~~~l~g-f~~a~~~~~~l~~~ 567 (569)
T COG4232 542 GPQGSE-PEILTG-FLTADAFLEHLERA 567 (569)
T ss_pred CCCCCc-CcCCcc-eecHHHHHHHHHHh
Confidence 7 4544 444666 89999999999875
No 131
>PRK00919 GMP synthase subunit B; Validated
Probab=98.79 E-value=1.3e-07 Score=94.04 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=104.8
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 012415 101 LEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ 178 (464)
Q Consensus 101 ~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~-~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~ 178 (464)
++.|+..+.. ++++|+||||.||+++ .++.+ .+.++..+|+|+|.....-.+++.++.+++ ++++++.-... +.
T Consensus 12 ~~~l~~~~~~--~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~-fl 87 (307)
T PRK00919 12 IEEIREEIGD--GKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDR-FL 87 (307)
T ss_pred HHHHHHHhCC--CCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHH-HH
Confidence 3444444433 5699999999999877 77766 477899999999998777788888888887 77777633221 11
Q ss_pred HHHHhcCCCCCCCcchhhh--hhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEE
Q 012415 179 ALVRSKGLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW 254 (464)
Q Consensus 179 ~~~~~~g~~~~~~~~~~~C--c~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~ 254 (464)
..+ .+. .+....| |......-+.+... +.+.+++|.-.++....|.++.... ...+.. ....+--+
T Consensus 88 ~~L--~~v----~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~~iks~~---nv~gl~-~~~~~~Ii 157 (307)
T PRK00919 88 DAL--KGV----TDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEGGIKSHH---NVGGLP-EGMVLKIV 157 (307)
T ss_pred Hhc--cCC----CChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccCcccccc---cccccC-hhhcCCcc
Confidence 111 222 1112223 22222333333332 5678999998877543343321110 000000 00123468
Q ss_pred EeCccCcHHHHHHHHHhcCCCcchhhhcCCc
Q 012415 255 NPVANVKGNDIWNFLRTMDVPINSLHSQGYI 285 (464)
Q Consensus 255 ~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~ 285 (464)
.||.+++.+||..|.+..|||+.-++..-+.
T Consensus 158 ~PL~~l~K~EVr~la~~lGLp~~~~~r~p~~ 188 (307)
T PRK00919 158 EPLRDLYKDEVREVARALGLPEEISERMPFP 188 (307)
T ss_pred cCchhCcHHHHHHHHHHcCCChhhhCCCCCC
Confidence 9999999999999999999998666555443
No 132
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.77 E-value=1.8e-07 Score=93.56 Aligned_cols=176 Identities=16% Similarity=0.212 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCCcH-HHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 012415 102 EIMDRALEKFGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNP-ETYRFFDEVEKHFGIRIEYMFPDAVEVQ 178 (464)
Q Consensus 102 eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~-~~~~i~vv~~DTg~~fp-eT~~~~~~~~~~~gl~i~~~~p~~~~~~ 178 (464)
+.|+..+.. ++++|++|||.||+++ +++.+ .+.++..+|+|+|..-. |..+..+.+++++|++++++.-... +.
T Consensus 8 ~~l~~~v~~--~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~-fl 84 (311)
T TIGR00884 8 EEIREQVGD--AKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKER-FL 84 (311)
T ss_pred HHHHHHhCC--CcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHH-HH
Confidence 344444432 5699999999999877 77766 47789999999998654 4444455556689999988743321 11
Q ss_pred HHHHhcCCCCCCCcchhhhhhccccchHHHHhc--c-CcEEEEeeeccCCcccccC-CceeecCCCCcCccCCCCCeEEE
Q 012415 179 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSE-IPVVQVDPVFEGLEGGVGSLVKW 254 (464)
Q Consensus 179 ~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~-~~~~itG~R~~ES~~~R~~-~~~~~~d~~~~~~~~~~~~~~k~ 254 (464)
.. ..+... +......| ......-+....+ + .+.+++|.-.++-...|.. ...+.......+.. .....-.+
T Consensus 85 ~~--l~~v~~-p~~~r~~~-~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~-~~~~~~ii 159 (311)
T TIGR00884 85 SA--LKGVTD-PEEKRKII-GRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLP-EDMKLKLV 159 (311)
T ss_pred hh--hcCCCC-hHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhccChhHhhhccCccccCC-hhhcCceE
Confidence 11 122111 11111122 2222333443332 4 5689999987664323321 00000000000000 00123368
Q ss_pred EeCccCcHHHHHHHHHhcCCCcchhhhcCCc
Q 012415 255 NPVANVKGNDIWNFLRTMDVPINSLHSQGYI 285 (464)
Q Consensus 255 ~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~ 285 (464)
.||.+.+.+||..|-+..|||++-.+++=|.
T Consensus 160 ~PL~~l~K~EVr~la~~lgLp~~~~~~~Pf~ 190 (311)
T TIGR00884 160 EPLRELFKDEVRKLGKELGLPEEIVWRHPFP 190 (311)
T ss_pred EEcccCcHHHHHHHHHHcCCCHHHhhCCCCC
Confidence 9999999999999999999998888887543
No 133
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.77 E-value=1e-07 Score=94.52 Aligned_cols=167 Identities=13% Similarity=0.127 Sum_probs=102.1
Q ss_pred cEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFY 190 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~-~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~~~~~~~g~~~~~ 190 (464)
+++|++|||.||+++ +++.+ .+.++..+|+|+|....+-.+.+.++++++++ +++++.-... +.. ...+... +
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~-fl~--~l~~v~n-p 76 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASER-FLS--ALKGVTD-P 76 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHH-HHH--HhcCCCC-H
Confidence 378999999999776 77777 57789999999998766667888999988886 8887743321 111 1122211 1
Q ss_pred CcchhhhhhccccchHHHHhc--c-CcEEEEeeeccCCcccccCCceeecCCCCcCccC--CCCCeEEEEeCccCcHHHH
Q 012415 191 EDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEG--GVGSLVKWNPVANVKGNDI 265 (464)
Q Consensus 191 ~~~~~~Cc~~~Kv~Pl~r~l~--~-~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~--~~~~~~k~~PI~dWt~~DV 265 (464)
...+..|......-+.+..+ + .+.+++|.-.++-..+|........-..+.+..+ .....--+.||.+++.+||
T Consensus 77 -e~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~a~~~~~vi~PL~~l~K~EV 155 (295)
T cd01997 77 -EEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPEDMKLKLIEPLRDLFKDEV 155 (295)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccccccccccccccchHhhCCcccccccCcHHHH
Confidence 11122233333444444443 4 6789999988764212221000000000100000 0012335899999999999
Q ss_pred HHHHHhcCCCcchhhhcCCc
Q 012415 266 WNFLRTMDVPINSLHSQGYI 285 (464)
Q Consensus 266 w~yi~~~~lp~npLy~~Gy~ 285 (464)
..|.+..|||..-++++-|+
T Consensus 156 R~lar~lGLp~~~~~~~Pfp 175 (295)
T cd01997 156 RELGRELGLPEEIVERHPFP 175 (295)
T ss_pred HHHHHHcCCCchhhCCCCCC
Confidence 99999999999777777555
No 134
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.77 E-value=4.7e-08 Score=86.65 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=62.7
Q ss_pred CCCcEEEEEecC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------HHHHHHcCCCC-
Q 012415 371 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG- 428 (464)
Q Consensus 371 ~~k~vlV~Fya~-wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~--------------------~~l~~~~~~I~- 428 (464)
.+++++|+||++ ||++|+...|.+.++.+.+++.++.++.|..+.+. ..+. +.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA-KALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH-HHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH-HHhCCcc
Confidence 689999999999 99999999999999999988767999888876541 3677 889988
Q ss_pred --------CCCEEEEEeCCCCCeeecCC
Q 012415 429 --------SFPTILFFPKHSSKPIKYPS 448 (464)
Q Consensus 429 --------~~PTi~lf~~g~~~~~~y~g 448 (464)
++|+++++.+.++......|
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeC
Confidence 99999999766643333334
No 135
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.76 E-value=5.7e-08 Score=93.14 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=68.2
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---HHHHHHcCC--------------
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQKLQ-------------- 426 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~-------~~---~~l~~~~~~-------------- 426 (464)
.++++||+||++||++|....|.++++.++|++.++.|+.|+++. .. .+++.++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 478999999999999999999999999999987779999999742 10 122101211
Q ss_pred --------------------CCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 427 --------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 427 --------------------I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
|...||.++++..++....|.| ..+.++|.+.|+++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G-~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP-TTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 1235888888655544556666 68999999999875
No 136
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.76 E-value=1.2e-07 Score=96.40 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=101.0
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC----------cHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL----------NPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q 178 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~----------fpeT~~~~~~~~~~~gl~i~~~~p~~~~~----~ 178 (464)
+|+|++|||+||.++ +++.+.+.++..+++|++.. ..+-.++++++++++|++++++.-..... .
T Consensus 2 kVlValSGGvDSsvla~lL~~~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~ 81 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVID 81 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcCCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHH
Confidence 589999999999766 88888888899999998643 35677899999999999988774322111 1
Q ss_pred HHHHh--cCCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeec-CC----CCcCc-cCCC
Q 012415 179 ALVRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV-DP----VFEGL-EGGV 248 (464)
Q Consensus 179 ~~~~~--~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~-d~----~~~~~-~~~~ 248 (464)
.++.. .|.. + ..-..|-...|..-|.+... +.+.++||.-.++.. .+ . .+.. |. .|... ....
T Consensus 82 ~~~~~~~~g~t--p-npc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~-~~-~--L~rg~d~~kDqsy~l~~l~~~ 154 (346)
T PRK00143 82 YFLDEYKAGRT--P-NPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD-GR-E--LLRGVDPNKDQSYFLYQLTQE 154 (346)
T ss_pred HHHHHHHcCCC--C-CcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc-cc-e--EEEccCCCcChhhhhccCCHH
Confidence 12222 2221 1 12234455567777776665 567899999887753 21 1 1111 11 00000 0000
Q ss_pred CCeEEEEeCccCcHHHHHHHHHhcCCCc
Q 012415 249 GSLVKWNPVANVKGNDIWNFLRTMDVPI 276 (464)
Q Consensus 249 ~~~~k~~PI~dWt~~DVw~yi~~~~lp~ 276 (464)
.....+.||.+++.+||..|.+.++||+
T Consensus 155 ~l~~~i~PL~~~~K~eVr~~A~~~gl~~ 182 (346)
T PRK00143 155 QLAKLLFPLGELTKPEVREIAEEAGLPV 182 (346)
T ss_pred HhcceeccCccCCHHHHHHHHHHcCCCc
Confidence 0124689999999999999999999986
No 137
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.75 E-value=2.4e-09 Score=99.62 Aligned_cols=100 Identities=21% Similarity=0.451 Sum_probs=91.0
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
..+..++.+|+..++. .-|++.|+||||+.|+...|.|+.++.--.+-+|.+++||+..+ +-+. -+|-+...|
T Consensus 24 s~~~~~~eenw~~~l~-----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-pgLs-GRF~vtaLp 96 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT-----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-PGLS-GRFLVTALP 96 (248)
T ss_pred ceeEEecccchhhhhc-----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-cccc-eeeEEEecc
Confidence 4799999999999875 67999999999999999999999988766666899999999999 8988 899999999
Q ss_pred EEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 432 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 432 Ti~lf~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
||.-.++|. .-.|.| .+|.++++.|+.
T Consensus 97 tIYHvkDGe--Frrysg-aRdk~dfisf~~ 123 (248)
T KOG0913|consen 97 TIYHVKDGE--FRRYSG-ARDKNDFISFEE 123 (248)
T ss_pred eEEEeeccc--cccccC-cccchhHHHHHH
Confidence 999999998 778887 799999999986
No 138
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.74 E-value=5e-08 Score=91.59 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=40.8
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 414 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d 414 (464)
+++++||+|||+||++|+..+|.+.++.++|++.++.|+.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 57899999999999999999999999999998778999999874
No 139
>PRK14561 hypothetical protein; Provisional
Probab=98.73 E-value=2.1e-07 Score=86.93 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=90.7
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH---HHhcCCCCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL---VRSKGLFSF 189 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~---~~~~g~~~~ 189 (464)
+++|++|||+||+++ +++.+. .++.++++|.|.. + -.++++++++++|++.+++.......... ....+.|
T Consensus 2 kV~ValSGG~DSslll~~l~~~-~~v~a~t~~~g~~-~-e~~~a~~~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P-- 76 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-YDVELVTVNFGVL-D-SWKHAREAAKALGFPHRVLELDREILEKAVDMIIEDGYP-- 76 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-CCeEEEEEecCch-h-HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 488999999999877 666555 5677889998863 3 47899999999999998875543322211 2222221
Q ss_pred CCcchhhhhhccccchHHHHhccCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCccCcHHHHHHHH
Q 012415 190 YEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFL 269 (464)
Q Consensus 190 ~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi 269 (464)
...|.. ....-+..+..+++.+++|.+.|+.. .-..++.+..-. ...++.-++||+.|+..||..|.
T Consensus 77 ----~~~~~~-l~~~~l~~~a~g~~~Ia~G~n~DD~~-et~~r~~~~a~~-------~~~gi~iirPL~~~~K~eI~~la 143 (194)
T PRK14561 77 ----NNAIQY-VHEHALEALAEEYDVIADGTRRDDRV-PKLSRSEIQSLE-------DRKGVQYIRPLLGFGRKTIDRLV 143 (194)
T ss_pred ----CchhHH-HHHHHHHHHHcCCCEEEEEecCCCcc-hhccHHHHhhhh-------cCCCcEEEeeCCCCCHHHHHHHH
Confidence 122332 22233444446888999999999953 111222111100 11246678999999999999998
Q ss_pred Hhc
Q 012415 270 RTM 272 (464)
Q Consensus 270 ~~~ 272 (464)
+..
T Consensus 144 ~~l 146 (194)
T PRK14561 144 ERL 146 (194)
T ss_pred Hhh
Confidence 875
No 140
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.8e-08 Score=92.66 Aligned_cols=87 Identities=22% Similarity=0.404 Sum_probs=76.0
Q ss_pred CCeeec-CcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC--
Q 012415 352 QNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG-- 428 (464)
Q Consensus 352 ~~v~~L-~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~-- 428 (464)
..+..+ +.+.+++.+. .+....|+|.|||.|.+.|+.+.|.|.+|+.+|..++++|++||+... ++.+ ++|+|.
T Consensus 124 e~ikyf~~~q~~deel~-rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a-~kfris~s 200 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELD-RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVA-AKFRISLS 200 (265)
T ss_pred hheeeecchhhHHHHhc-cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChH-HheeeccC
Confidence 467777 5566666654 566789999999999999999999999999999988899999999999 9999 999884
Q ss_pred ----CCCEEEEEeCCCC
Q 012415 429 ----SFPTILFFPKHSS 441 (464)
Q Consensus 429 ----~~PTi~lf~~g~~ 441 (464)
..||+++|++|++
T Consensus 201 ~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKE 217 (265)
T ss_pred cccccCCeEEEEccchh
Confidence 5899999999985
No 141
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.71 E-value=2.7e-08 Score=79.60 Aligned_cols=63 Identities=24% Similarity=0.478 Sum_probs=49.6
Q ss_pred CCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 437 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~ 437 (464)
+++++||+|+++||++|+.|...+ .++.+.+.+ ++.++++|.+..+.... +...++|+++|+.
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~---~~~~~~P~~~~ld 81 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQ---FDRQGYPTFFFLD 81 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHH---HHHCSSSEEEEEE
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHH---hCCccCCEEEEeC
Confidence 699999999999999999999887 466665554 79999999987733332 2226699999985
No 142
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.71 E-value=1.9e-07 Score=95.05 Aligned_cols=172 Identities=12% Similarity=0.051 Sum_probs=103.8
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH-----Hhc
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV-----RSK 184 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~--fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~-----~~~ 184 (464)
.+|+|++|||.||+++ +|+.+.+.++..+++|.+.. -++..+.++++++++|++++++.-... ++..+ ..+
T Consensus 6 ~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~-f~~~v~~~f~~~y 84 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKV-FRKQIIDYFIDEY 84 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHH-HHHHHHhhhhhHH
Confidence 4699999999999776 88888888899999997632 356688899999999999988743221 11111 111
Q ss_pred --CCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCcee--ecCC----CCcCccCCCCC-eEE
Q 012415 185 --GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVV--QVDP----VFEGLEGGVGS-LVK 253 (464)
Q Consensus 185 --g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~--~~d~----~~~~~~~~~~~-~~k 253 (464)
|.. ...-..|-...|..-+.++.. +.+.++||.-..-.. ......+ ..|. .|.-..-.... ..-
T Consensus 85 ~~g~t---pnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~--~~~~~~l~~g~D~~kDQSyfL~~l~~~~l~~~ 159 (360)
T PRK14665 85 MSGHT---PVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQW--IDGNYYITPAEDVDKDQSFFLWGLRQEILQRM 159 (360)
T ss_pred hccCC---CCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceec--cCCcEEEEeecCCCCCceEEecCCCHHHHhhe
Confidence 210 012234566677777766664 567899996542110 0011111 0111 00000000000 123
Q ss_pred EEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccCccCCC
Q 012415 254 WNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCT 293 (464)
Q Consensus 254 ~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT 293 (464)
+.||.+++.+||.++.++.+++ +..++ =.|-|+.+|+
T Consensus 160 ifPLg~~~K~eVr~~A~~~gl~--~~a~k-~eSq~iCF~~ 196 (360)
T PRK14665 160 LLPMGGMTKSEARAYAAERGFE--KVAKK-RDSLGVCFCP 196 (360)
T ss_pred eccCcCCCHHHHHHHHHHCCCC--ccCcC-CCCCccccCC
Confidence 7999999999999999999973 22323 3566777775
No 143
>PLN02412 probable glutathione peroxidase
Probab=98.68 E-value=1.5e-07 Score=85.92 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------CcHHH----HHHcCC-------------
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQKEY----AKQKLQ------------- 426 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~-------~~~~l----~~~~~~------------- 426 (464)
.++++||+||++||++|+...|.|.++.++|++.++.|+.|+++. ...++ + ++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~-~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVC-TRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHH-HccCCCCceEeEEeeCC
Confidence 468999999999999999999999999999998789999998752 11121 2 2221
Q ss_pred ---------------------CCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 427 ---------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 427 ---------------------I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
|...|+.+++..+++....+.| ..+.++|.+.|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g-~~~~~~l~~~i~~~ 163 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP-TTSPLKIEKDIQNL 163 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 3335777777544443444555 78888999888765
No 144
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.67 E-value=7.8e-08 Score=83.43 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=52.2
Q ss_pred hHHHHHhh-cCCCCcEEEEEecCCChhHHhhHHHHH---HHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012415 361 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 436 (464)
Q Consensus 361 ~f~~~i~~-~~~~k~vlV~Fya~wC~~C~~~~p~~~---~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf 436 (464)
+|++.+.. ..++|+++|+||++||++|+.|...+- ++.+..+. ++..+.++.+..+.... ..+ .++||++||
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~--~~g-~~vPtivFl 86 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS--PDG-QYVPRIMFV 86 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC--ccC-cccCeEEEE
Confidence 44444332 336899999999999999999998753 56666644 57777888764422222 233 689999999
Q ss_pred eCCC
Q 012415 437 PKHS 440 (464)
Q Consensus 437 ~~g~ 440 (464)
....
T Consensus 87 d~~g 90 (130)
T cd02960 87 DPSL 90 (130)
T ss_pred CCCC
Confidence 5544
No 145
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.67 E-value=3e-07 Score=93.60 Aligned_cols=161 Identities=11% Similarity=0.101 Sum_probs=96.5
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCC----------CCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG----------RLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q 178 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg----------~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~----~ 178 (464)
+++|++|||+||+++ +|+.+.+.++..+|+++. ...++-.+.++++++.+|++++++.-...-. .
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~ 81 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFE 81 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcCCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHH
Confidence 589999999999776 888888888888888542 1235677889999999999998764322111 1
Q ss_pred HHHHhc--CCCCCCCcchhhhhhccccchHHHHhc---cCcEEEEeeec---cCCcccccCCceeecC--CCCcCc-cCC
Q 012415 179 ALVRSK--GLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRK---DQSPGTRSEIPVVQVD--PVFEGL-EGG 247 (464)
Q Consensus 179 ~~~~~~--g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~---~~~~~itG~R~---~ES~~~R~~~~~~~~d--~~~~~~-~~~ 247 (464)
.++..+ |.. + +.--.|-...|..-|.++.. +.+.++||.-. ++. +....+.....+ ..+.-. ...
T Consensus 82 ~~~~~y~~g~t--p-npC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~-~~~~l~~~~d~~kDqsy~L~~l~~ 157 (352)
T TIGR00420 82 PFIQEYKEGRT--P-NPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIE-GKSLLLRALDKNKDQSYFLYHLSH 157 (352)
T ss_pred HHHHHHHcCCC--C-CcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCC-CcEEEEEccCCCcCcceecccCCH
Confidence 112221 211 1 12234445567677655543 66789999965 222 111111111111 011000 000
Q ss_pred CCCeEEEEeCccCcHHHHHHHHHhcCCCcch
Q 012415 248 VGSLVKWNPVANVKGNDIWNFLRTMDVPINS 278 (464)
Q Consensus 248 ~~~~~k~~PI~dWt~~DVw~yi~~~~lp~np 278 (464)
..-...+.||.+|+.+||..|.+.+++|+..
T Consensus 158 ~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~ 188 (352)
T TIGR00420 158 EQLAKLLFPLGELLKPEVRQIAKNAGLPTAE 188 (352)
T ss_pred HHhhhhcccCCCCCHHHHHHHHHHcCCCCCC
Confidence 0012368999999999999999999998633
No 146
>PRK08349 hypothetical protein; Validated
Probab=98.65 E-value=1.7e-07 Score=87.99 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=83.4
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh----CCcE---EEEcCC--hHHHHHHHHh
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF----GIRI---EYMFPD--AVEVQALVRS 183 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~----gl~i---~~~~p~--~~~~~~~~~~ 183 (464)
++++++|||+||+++ +++.+.+.++..+|+|++ +...+.++++++++ |+++ .++.-. .......+..
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g~~v~av~~d~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 78 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRGVEVYPVHFRQD---EKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRE 78 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcCCeEEEEEEeCC---HHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHh
Confidence 478999999999776 778788888999999985 23344455555555 5654 222111 0111111111
Q ss_pred cCCCCCCCcchhhh--hhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCcc
Q 012415 184 KGLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 259 (464)
Q Consensus 184 ~g~~~~~~~~~~~C--c~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~d 259 (464)
.+. ....| |+.....-+.++.. +.+.+++|...+|.. .-........+. ..++..+.|+++
T Consensus 79 ~~~------~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a-~~~l~nl~~~~~--------~~~i~i~rPL~~ 143 (198)
T PRK08349 79 LKK------EKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVA-SQTLDNLMVIST--------ATDLPVLRPLIG 143 (198)
T ss_pred hCC------CCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHH-HHHHHHHhcccc--------ccCCeEEcCCCC
Confidence 111 11223 44444444444433 667999998877752 111111111110 123557899999
Q ss_pred CcHHHHHHHHHhcCCC
Q 012415 260 VKGNDIWNFLRTMDVP 275 (464)
Q Consensus 260 Wt~~DVw~yi~~~~lp 275 (464)
++..||..|.+.+|++
T Consensus 144 ~~K~eI~~~a~~~g~~ 159 (198)
T PRK08349 144 LDKEEIVKIAKEIGTF 159 (198)
T ss_pred CCHHHHHHHHHHcCCh
Confidence 9999999999999953
No 147
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.65 E-value=1.3e-07 Score=99.10 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=94.3
Q ss_pred CCcEEEEechhHHHHHH-HHHHH-----cCCCeEEEEEeCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 012415 112 GNDIAIAFSGAEDVALI-EYAHL-----TGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 183 (464)
Q Consensus 112 ~~~i~vafSGGKDS~ll-~L~~~-----~~~~i~vv~~DTg~~--fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~ 183 (464)
+.+|+|++|||+||++| |++.+ .+.++.++|+|.|.. -.+-.+|++++++.+|+++++..-+.. .
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~~-------~ 87 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLD-------Q 87 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEecc-------C
Confidence 35699999999999766 77653 245789999999964 234468999999999999877532210 0
Q ss_pred cCCCCCCCcchhhhhhccccchHHHHhccCcEEEEeeeccCCcccccCCceeecCC--CCcCc--cCCCCCeEEEEeCcc
Q 012415 184 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEGL--EGGVGSLVKWNPVAN 259 (464)
Q Consensus 184 ~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~~~~~d~--~~~~~--~~~~~~~~k~~PI~d 259 (464)
.+ .+...|.+...-.-+.......+++++|...|+... ---+....... .+.+. ....++...++|+++
T Consensus 88 ~~------~~~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq~E-T~L~~L~rG~g~~gL~gm~~~~~~~~~~liRPLL~ 160 (436)
T PRK10660 88 RG------LGIEAAARQARYQAFARTLLPGEVLVTAQHLDDQCE-TFLLALKRGSGPAGLSAMAEVSPFAGTRLIRPLLA 160 (436)
T ss_pred CC------CCHHHHHHHHHHHHHHHHHHhCCEEEEcCchHHHHH-HHHHHHHcCCChhhccccceecccCCCcEeCCCcc
Confidence 01 112333333333444444445568999999887531 11111111000 00000 000023457899999
Q ss_pred CcHHHHHHHHHhcCCCcc
Q 012415 260 VKGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 260 Wt~~DVw~yi~~~~lp~n 277 (464)
.+.+||..|.+.++|||.
T Consensus 161 ~~k~ei~~ya~~~~l~~~ 178 (436)
T PRK10660 161 RSREELEQYAQAHGLRWI 178 (436)
T ss_pred CCHHHHHHHHHHcCCCEE
Confidence 999999999999999983
No 148
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.64 E-value=7e-07 Score=91.02 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=99.8
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC--------cHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HH
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--------NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----AL 180 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~--------fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~----~~ 180 (464)
+|+|++|||.||+++ +++.+.+.++..+|+|++.. -.+-.++++++++.+|++++++.-...... .+
T Consensus 1 kVlValSGGvDSsvla~lL~~~g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~ 80 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPF 80 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHH
Confidence 378999999999776 88888888888999998742 346678999999999999887753322111 12
Q ss_pred HHhcCCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeec-CC----CCcCcc-CCCCCeE
Q 012415 181 VRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV-DP----VFEGLE-GGVGSLV 252 (464)
Q Consensus 181 ~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~-d~----~~~~~~-~~~~~~~ 252 (464)
+..+.....+ +.-..|....|..-+.+... +.+.++||.-++....+......+.. +. .|.-.. .......
T Consensus 81 i~~~~~g~tp-npc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~~l~~ 159 (349)
T cd01998 81 LEEYKKGRTP-NPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQLSR 159 (349)
T ss_pred HHHHHcCCCC-CchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCHHHHhh
Confidence 2222111111 12234555567777776555 66789999877654211011111111 10 000000 0000134
Q ss_pred EEEeCccCcHHHHHHHHHhcCCCc
Q 012415 253 KWNPVANVKGNDIWNFLRTMDVPI 276 (464)
Q Consensus 253 k~~PI~dWt~~DVw~yi~~~~lp~ 276 (464)
.+.||.+++..||.+|.++++||+
T Consensus 160 ii~PL~~~~K~eVr~~A~~~gl~~ 183 (349)
T cd01998 160 LIFPLGDLTKPEVREIAKELGLPV 183 (349)
T ss_pred eeecCCCCCHHHHHHHHHHcCCCC
Confidence 689999999999999999999984
No 149
>smart00594 UAS UAS domain.
Probab=98.63 E-value=3.7e-07 Score=78.86 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=73.0
Q ss_pred chHHHHHhh-cCCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEE
Q 012415 360 TGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 360 ~~f~~~i~~-~~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Id~d~~~-~~l~~~~~~I~~~PTi~ 434 (464)
.+|++.+.. ..++|+++|+|+++||++|+.+.... .++.+.++. ++.+..+|++..+ .+++ ..|++.++|+++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~~ 91 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVS-QFYKLDSFPYVA 91 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHH-HhcCcCCCCEEE
Confidence 355555432 33578999999999999999998764 366667765 7889899987552 6788 899999999999
Q ss_pred EEe-CCCC---CeeecCCCCCCHHHHHHHH
Q 012415 435 FFP-KHSS---KPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 435 lf~-~g~~---~~~~y~gg~~~~e~L~~fI 460 (464)
++. +|+. ..+....|..+.++|+.++
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 994 4321 1233333478999998876
No 150
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.63 E-value=2.1e-07 Score=83.50 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=71.9
Q ss_pred cEEEEechhHHHHHH-HHHHHcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 191 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~-~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~ 191 (464)
.++|++|||+||+++ +++.+... .+.++++|.|...++..++++++++. |+++..+.++........... +..-..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~~~-l~~~~~ 80 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQLAR-FKAKVG 80 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHHHH-HhcccC
Confidence 389999999999766 77777544 67788999999889999999999999 888766555444322211110 000011
Q ss_pred cchhhhhhccccchHHHHhc-cCcEEEEeeeccCCc
Q 012415 192 DGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSP 226 (464)
Q Consensus 192 ~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~R~~ES~ 226 (464)
.....|...+.....+.+.+ +.+++++|...+|..
T Consensus 81 ~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~ 116 (154)
T cd01996 81 DPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQEF 116 (154)
T ss_pred CCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhc
Confidence 11223444443333333333 567899999999975
No 151
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.58 E-value=4.6e-07 Score=82.77 Aligned_cols=90 Identities=21% Similarity=0.339 Sum_probs=69.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------------cHHHHH
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------------QKEYAK 422 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~----------------------------~~~l~~ 422 (464)
.++++||+||++||+.|....+.+.++.+++.+.++.|+.|+.+.. +..++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~- 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA- 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH-
Confidence 4689999999999999999999999999999865799999987641 13456
Q ss_pred HcCCCCCCCEEEEEeCCCCCeeecCC----------CCCCHHHHHHHHHHh
Q 012415 423 QKLQLGSFPTILFFPKHSSKPIKYPS----------ERRDVDSLMAFVDAL 463 (464)
Q Consensus 423 ~~~~I~~~PTi~lf~~g~~~~~~y~g----------g~~~~e~L~~fI~~l 463 (464)
+.|+|...|+++++..+++ +.|.+ +..+.+++.+-|+++
T Consensus 103 ~~~~v~~~P~~~lid~~G~--v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGK--LVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HHcCCCcCCcEEEECCCCe--EEEeecccCCcccccccccHHHHHHHHHHH
Confidence 7889999999999964443 22221 124567788887764
No 152
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.57 E-value=1.1e-06 Score=85.37 Aligned_cols=162 Identities=18% Similarity=0.156 Sum_probs=96.5
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHcC--CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 012415 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 177 (464)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~~~--~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~ 177 (464)
..|+..+...+ .+++|++|||.||+++ +|+.+.. .++..++++++...++..+.++++++++|++.+++..... +
T Consensus 12 ~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~-~ 90 (248)
T cd00553 12 LFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPA-V 90 (248)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHH-H
Confidence 44555555544 5699999999999766 7777653 5788999999988899999999999999999887643321 2
Q ss_pred HHHHHhcCC-CCCCCcchhhh--hhccccchHHHHhccCc--EEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeE
Q 012415 178 QALVRSKGL-FSFYEDGHQEC--CRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV 252 (464)
Q Consensus 178 ~~~~~~~g~-~~~~~~~~~~C--c~~~Kv~Pl~r~l~~~~--~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~ 252 (464)
......... ..........| |...+..-|....+... ++-||. ++|.. .. .+. .+ + .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~---~G--~~t---~~-----g-d~~~ 155 (248)
T cd00553 91 EAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELL---LG--YFT---KY-----G-DGAA 155 (248)
T ss_pred HHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHH---hC--Cee---cc-----C-Cccc
Confidence 222211100 00001111112 22222333333333333 444554 23321 11 110 11 0 1234
Q ss_pred EEEeCccCcHHHHHHHHHhcCCCcchh
Q 012415 253 KWNPVANVKGNDIWNFLRTMDVPINSL 279 (464)
Q Consensus 253 k~~PI~dWt~~DVw~yi~~~~lp~npL 279 (464)
.++||.+....+|+.+.+..++|.+-+
T Consensus 156 ~i~Pl~~l~K~eV~~la~~~~ip~~i~ 182 (248)
T cd00553 156 DINPIGDLYKTQVRELARYLGVPESII 182 (248)
T ss_pred CccccCCCcHHHHHHHHHHHCchHHHh
Confidence 689999999999999999999886444
No 153
>PRK13980 NAD synthetase; Provisional
Probab=98.57 E-value=9.2e-07 Score=86.76 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc--CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012415 101 LEIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT--GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (464)
Q Consensus 101 ~eil~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~~--~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 176 (464)
...|+..+..++ .+++|++|||.||+++ +++.+. ..++..++++++...++..+.++.+++++|++++++.-.. .
T Consensus 18 ~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~-~ 96 (265)
T PRK13980 18 VDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITP-I 96 (265)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHH-H
Confidence 456666677766 5799999999999766 777664 3578899999998888899999999999999987763221 1
Q ss_pred HHHHHHhcCCCCCCC-cchhhhhhccccchHHHHhccCc--EEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEE
Q 012415 177 VQALVRSKGLFSFYE-DGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVK 253 (464)
Q Consensus 177 ~~~~~~~~g~~~~~~-~~~~~Cc~~~Kv~Pl~r~l~~~~--~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k 253 (464)
...+.... +.... .....|-++| ..-+....+... ++-||.+.+.-. . ... .+ +. +-..
T Consensus 97 ~~~~~~~~--~~~~~~~~~n~~aR~R-~~~L~~~A~~~g~lvlgTgn~sE~~~----G--~~t---~~-----gD-~~~~ 158 (265)
T PRK13980 97 VDAFFSAI--PDADRLRVGNIMARTR-MVLLYDYANRENRLVLGTGNKSELLL----G--YFT---KY-----GD-GAVD 158 (265)
T ss_pred HHHHHHHc--ccccchHHHHHHHHHH-HHHHHHHHhhcCCEEEcCCCHhHHHh----C--Ccc---CC-----CC-cccC
Confidence 22221111 10000 0012233332 223333333333 444554422211 1 110 11 00 1224
Q ss_pred EEeCccCcHHHHHHHHHhcCCC
Q 012415 254 WNPVANVKGNDIWNFLRTMDVP 275 (464)
Q Consensus 254 ~~PI~dWt~~DVw~yi~~~~lp 275 (464)
++||.+++..||++..+..++|
T Consensus 159 l~Pl~~l~K~eV~~la~~lgip 180 (265)
T PRK13980 159 LNPIGDLYKTQVRELARHLGVP 180 (265)
T ss_pred cccCCCCcHHHHHHHHHHHCch
Confidence 8999999999999999999986
No 154
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.56 E-value=4.1e-07 Score=81.60 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=65.4
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC--------CCc--HHHHHHcCCC-------------
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD--------GDQ--KEYAKQKLQL------------- 427 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d--------~~~--~~l~~~~~~I------------- 427 (464)
.++++||+|||+||++|+...|.+.++.++|++.++.|+.|++. ..+ .+++++++++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 57889999999999999999999999999998778999999862 110 2233111211
Q ss_pred -------------CCCCE----EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 428 -------------GSFPT----ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 428 -------------~~~PT----i~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
..+|+ .+++...++....+.| ..+.++|...|+++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g-~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP-EEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC-CCCHHHHHHHHHHh
Confidence 13675 6666444433455555 68999999988875
No 155
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.53 E-value=1.6e-06 Score=84.32 Aligned_cols=159 Identities=12% Similarity=0.158 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012415 101 LEIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (464)
Q Consensus 101 ~eil~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~~-~~~i~vv~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 176 (464)
.+.|+..++..+ .+++|++|||+||+++ +|+.+. +..+..++++.+.. .++..+.++++++.+|++.+++.-...
T Consensus 10 ~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~- 88 (250)
T TIGR00552 10 EDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPI- 88 (250)
T ss_pred HHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHH-
Confidence 345666666544 5699999999999876 777664 43677777777643 567889999999999999887632221
Q ss_pred HHHHHH-hcCCCCCCCcchhhh--hhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCe
Q 012415 177 VQALVR-SKGLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251 (464)
Q Consensus 177 ~~~~~~-~~g~~~~~~~~~~~C--c~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~ 251 (464)
+..... ........ +....| |...+..-|....+ +..++.||.+.+... . ... .+ + ...
T Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~----G--~~t---~~-----g-d~~ 152 (250)
T TIGR00552 89 AASFQAQTETGDELS-DFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELML----G--YFT---KY-----G-DGG 152 (250)
T ss_pred HHHHHHHhccccCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhh----C--Cee---cc-----c-CCc
Confidence 111111 01111100 111112 33344445554444 445777887754321 1 000 00 0 122
Q ss_pred EEEEeCccCcHHHHHHHHHhcCCCc
Q 012415 252 VKWNPVANVKGNDIWNFLRTMDVPI 276 (464)
Q Consensus 252 ~k~~PI~dWt~~DVw~yi~~~~lp~ 276 (464)
..++||.+.+..+|+.|.+.+++|.
T Consensus 153 ~~i~PL~~l~K~eV~~lA~~~g~p~ 177 (250)
T TIGR00552 153 CDIAPIGDLFKTQVYELAKRLNVPE 177 (250)
T ss_pred cCccccCCCcHHHHHHHHHHHCccH
Confidence 3689999999999999999999864
No 156
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.53 E-value=4.4e-07 Score=74.93 Aligned_cols=67 Identities=33% Similarity=0.610 Sum_probs=60.9
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCcHHHHHHcCC--CCCCCEEEEEeCCCC
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQ--LGSFPTILFFPKHSS 441 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d-~~~~~l~~~~~~--I~~~PTi~lf~~g~~ 441 (464)
+++++|.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .+ +++. ..|+ +..+|+++++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~-~~~~-~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDEN-PDLA-AEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCC-hHHH-HHHhhhhccCCeEEEEeCcch
Confidence 78999999999999999999999999999986 6899999997 66 7888 8999 999999999988874
No 157
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.52 E-value=2.5e-06 Score=80.10 Aligned_cols=164 Identities=13% Similarity=0.134 Sum_probs=94.9
Q ss_pred EEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH-HHH-HHHhcCC-CCCC
Q 012415 115 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE-VQA-LVRSKGL-FSFY 190 (464)
Q Consensus 115 i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~-~~~-~~~~~g~-~~~~ 190 (464)
++|++|||+||+++ +++.+.+.++..+++|.|....+-.++++++++.+|++++++.-.... +.. .....+. ....
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDEGYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALTDESEIPPQK 80 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHcCCcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhcccccccccCCCCCCCcC
Confidence 36899999999766 777777778999999999765667789999999999998766332110 000 0000000 0000
Q ss_pred Ccc---hhhhhh----ccccchHHHHh--ccCcEEEEeeeccCCccc---ccC-CceeecCCCCcCccCCCCCeEEEEeC
Q 012415 191 EDG---HQECCR----VRKVRPLRRAL--KGLRAWITGQRKDQSPGT---RSE-IPVVQVDPVFEGLEGGVGSLVKWNPV 257 (464)
Q Consensus 191 ~~~---~~~Cc~----~~Kv~Pl~r~l--~~~~~~itG~R~~ES~~~---R~~-~~~~~~d~~~~~~~~~~~~~~k~~PI 257 (464)
... .+.+|. .....-+..+. .|...+++|.-.+|-... |.. +..+..-... +...++.-++|+
T Consensus 81 ~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~----~~~~~~~i~~Pl 156 (201)
T TIGR00364 81 SNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNL----GMLTPVKIRAPL 156 (201)
T ss_pred ccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHh----hcCCCeEEEECC
Confidence 000 111111 11111222222 266789999988884200 111 0000000000 001235568999
Q ss_pred ccCcHHHHHHHHHhcC---CCcchhhhc
Q 012415 258 ANVKGNDIWNFLRTMD---VPINSLHSQ 282 (464)
Q Consensus 258 ~dWt~~DVw~yi~~~~---lp~npLy~~ 282 (464)
++|+..||-++.+++| +|+.+-+.+
T Consensus 157 ~~~~K~eI~~la~~~g~~~~~~~~t~sC 184 (201)
T TIGR00364 157 MDLTKAEIVQLADELGVLDLVIKLTYSC 184 (201)
T ss_pred cCCCHHHHHHHHHHcCCccccHhhCCcC
Confidence 9999999999999999 887666654
No 158
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.52 E-value=3.4e-07 Score=82.09 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=39.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 414 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d 414 (464)
.++++||+|||+||+ |+...|.++++.++|++.++.|+.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 478999999999999 9999999999999998767999999864
No 159
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.51 E-value=4.1e-07 Score=93.33 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=88.8
Q ss_pred EEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHH-----HHHHhcCC
Q 012415 115 IAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQ-----ALVRSKGL 186 (464)
Q Consensus 115 i~vafSGGKDS~ll-~L~~~~-~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~-i~~~~p~~~~~~-----~~~~~~g~ 186 (464)
|+|+||||.||.++ +++.+. +.++..+++|+|..- +-.+.++++++.+|++ ++++.-. ..+. ..+..+..
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~~-~~~e~a~~~a~~lG~~~~~viD~~-~ef~~~~i~~~i~an~~ 78 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPE-EEIEAIEEKALKLGAKKHVVVDLR-EEFVEDYIFPAIQANAL 78 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCcc-hhHHHHHHHHHHcCCCEEEEeccH-HHHHHHhhHHHHHhCcc
Confidence 57899999998766 777665 448999999999643 3358999999999986 6655322 1121 11222211
Q ss_pred CC-CCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCccC---
Q 012415 187 FS-FYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV--- 260 (464)
Q Consensus 187 ~~-~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dW--- 260 (464)
+. .|- ....+|+-....-+.++.+ |.+++.+|.........|......... +.+-.+.|+.+|
T Consensus 79 ~~g~y~-l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al~----------pel~ViaPlre~~~~ 147 (385)
T cd01999 79 YEGTYP-LGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYALN----------PDLKIIAPWRDWEFL 147 (385)
T ss_pred ccCCCc-CCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhhC----------CCCEEEcchhhhhcC
Confidence 00 000 0001133222222223222 667898888652111122222211122 235578999999
Q ss_pred cHHHHHHHHHhcCCCcch
Q 012415 261 KGNDIWNFLRTMDVPINS 278 (464)
Q Consensus 261 t~~DVw~yi~~~~lp~np 278 (464)
+.+||-.|.+++|||+.-
T Consensus 148 sr~ev~~~A~~~Gip~~~ 165 (385)
T cd01999 148 SREEEIEYAEEHGIPVPV 165 (385)
T ss_pred CHHHHHHHHHHcCCCCcc
Confidence 999999999999999853
No 160
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.50 E-value=3.9e-07 Score=83.95 Aligned_cols=86 Identities=9% Similarity=-0.019 Sum_probs=62.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEE------EEEEcCCC----------------------------
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV------GKFRADGD---------------------------- 416 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~------~~Id~d~~---------------------------- 416 (464)
.+|.+||+|||.||++|+...|.+++|+++ ++.+ ..||.++.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 589999999999999999999999999543 3445 56665542
Q ss_pred cHHHHHHcCCCCCCCEE-EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 417 QKEYAKQKLQLGSFPTI-LFFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 417 ~~~l~~~~~~I~~~PTi-~lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
+..+. ..|++.++|+. +++++.++....+.| ..+.+++.+++..
T Consensus 134 ~g~v~-~~~gv~~~P~T~fVIDk~GkVv~~~~G-~l~~ee~e~~~~l 178 (184)
T TIGR01626 134 KGAVK-NAWQLNSEDSAIIVLDKTGKVKFVKEG-ALSDSDIQTVISL 178 (184)
T ss_pred cchHH-HhcCCCCCCceEEEECCCCcEEEEEeC-CCCHHHHHHHHHH
Confidence 02355 68899999877 677655544555556 6787777665543
No 161
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.48 E-value=4.4e-07 Score=88.55 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=78.5
Q ss_pred CCeeecCc-chHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012415 352 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 430 (464)
Q Consensus 352 ~~v~~L~~-~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~ 430 (464)
+.|.+|+. +.|-+.+........|||.||-+.++.|..|...|..||.+|.. ++|++|..+.. + +. ..|.+..+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~-~-~~-~~f~~~~L 199 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKC-P-AS-ENFPDKNL 199 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGC-C-TT-TTS-TTC-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhcc-C-cc-cCCcccCC
Confidence 36888864 77888776444456899999999999999999999999999986 99999999876 4 55 78999999
Q ss_pred CEEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHHh
Q 012415 431 PTILFFPKHSSK-----PIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 431 PTi~lf~~g~~~-----~~~y~gg~~~~e~L~~fI~~l 463 (464)
||+++|++|... .....|...+.++|..||.+.
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999742 223334567889999998754
No 162
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.47 E-value=5.6e-07 Score=69.30 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=53.8
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHH----HHHHcCCCCCCCEEEEEeCCCCCeeecCCCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 451 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~----l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~ 451 (464)
+..|+++||++|+.+.+.|++. ++.+..+|++.+ +. +. +.+++.++|+++++ |+ . ..| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~-~~~~~~~~-~~~~~~~vP~~~~~--~~--~--~~g--~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------GIAFEEIDVEKD-SAAREEVL-KVLGQRGVPVIVIG--HK--I--IVG--F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------CCeEEEEeccCC-HHHHHHHH-HHhCCCcccEEEEC--CE--E--Eee--C
Confidence 5689999999999999888652 588999999887 43 45 67999999999875 43 2 333 5
Q ss_pred CHHHHHHHHH
Q 012415 452 DVDSLMAFVD 461 (464)
Q Consensus 452 ~~e~L~~fI~ 461 (464)
+.+.|.++|+
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 7788988874
No 163
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.47 E-value=1.4e-06 Score=89.68 Aligned_cols=148 Identities=17% Similarity=0.208 Sum_probs=91.6
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFYE 191 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~~~~~~~g~~~~~~ 191 (464)
+++|+||||.||.++ +++.+.+.++..+++|+|.. .+-.+.++++++.+|+ +++++.-.. ++...+..+....
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g~~V~av~id~Gq~-~~e~~~a~~~a~~lGi~~~~viD~~~----ef~~~~~~~~i~~ 75 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQP-EEDIDAIPEKALEYGAENHYTIDARE----EFVKDYGFAAIQA 75 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEEEecCCC-hHHHHHHHHHHHHhCCCeEEEEeCHH----HHHHhhchhhhcC
Confidence 378999999998766 77777788899999999943 6678889999999997 676663221 2222222222211
Q ss_pred cchhhhh-hcccc---chH-----HHHhc--cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCcc-
Q 012415 192 DGHQECC-RVRKV---RPL-----RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN- 259 (464)
Q Consensus 192 ~~~~~Cc-~~~Kv---~Pl-----~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~d- 259 (464)
+..+|| +.++. +|+ .+..+ +.++++.|.........|...+..... +++-.+.|+.+
T Consensus 76 -n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~~----------~~l~viaPLrew 144 (394)
T TIGR00032 76 -NAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLN----------PDLKVIAPWRDL 144 (394)
T ss_pred -CccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHhC----------CCCeEECchhhc
Confidence 122333 22222 111 22111 567899997543221013222221112 24557899955
Q ss_pred -CcHHHHHHHHHhcCCCcc
Q 012415 260 -VKGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 260 -Wt~~DVw~yi~~~~lp~n 277 (464)
++.+|+-.|++++|+|+.
T Consensus 145 ~l~r~ei~~ya~~~Gip~~ 163 (394)
T TIGR00032 145 NFTREEEIEYAIQCGIPYP 163 (394)
T ss_pred CCCHHHHHHHHHHcCCCee
Confidence 699999999999999883
No 164
>PLN02347 GMP synthetase
Probab=98.47 E-value=2.6e-06 Score=91.11 Aligned_cols=175 Identities=14% Similarity=0.196 Sum_probs=105.7
Q ss_pred HHHHHHHHHcC--CcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012415 102 EIMDRALEKFG--NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (464)
Q Consensus 102 eil~~a~~~~~--~~i~vafSGGKDS~ll-~L~~~-~~~~i~vv~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 176 (464)
+.++.+.+..+ ++++|++|||.||+++ .|+.+ .+.++..+|+|+|.. ..|..+.++++++++|++++++.-..
T Consensus 217 ~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e-- 294 (536)
T PLN02347 217 EQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASE-- 294 (536)
T ss_pred HHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcH--
Confidence 44455555544 3599999999999877 78887 677899999999975 55777777889999999998874332
Q ss_pred HHHHHHh-cCCCCCCCcchhhhhhcccc---chHHHHh---c---cC--cEEEEeeeccCCcc--cccCCc--eeecCCC
Q 012415 177 VQALVRS-KGLFSFYEDGHQECCRVRKV---RPLRRAL---K---GL--RAWITGQRKDQSPG--TRSEIP--VVQVDPV 240 (464)
Q Consensus 177 ~~~~~~~-~g~~~~~~~~~~~Cc~~~Kv---~Pl~r~l---~---~~--~~~itG~R~~ES~~--~R~~~~--~~~~d~~ 240 (464)
.++.. .|. - +..+. |.+.|- +-+.+.. . +. +.++.|+-.++-.. .|-... ....-..
T Consensus 295 --~fl~~l~~~---~-~pe~k-~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~ 367 (536)
T PLN02347 295 --RFLSKLKGV---T-DPEKK-RKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKS 367 (536)
T ss_pred --HHHhhCCCC---C-ChHHh-cchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCCCCCccccccceee
Confidence 12222 232 2 22223 333333 4444333 1 22 45678886655321 232210 0000000
Q ss_pred CcCccC--CCCCeEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCc
Q 012415 241 FEGLEG--GVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYI 285 (464)
Q Consensus 241 ~~~~~~--~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~ 285 (464)
+.+..+ ..-..--+.||.+++..||.+..++.|||.+-++++=|+
T Consensus 368 hhn~~~l~~~~~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~~p~p 414 (536)
T PLN02347 368 HHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFP 414 (536)
T ss_pred ecccccChHHHHCccccchhhCcHHHHHHHHHHcCCCHHHhcCCCcC
Confidence 111000 000122478999999999999999999997777776554
No 165
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.43 E-value=1.3e-06 Score=89.69 Aligned_cols=144 Identities=14% Similarity=0.139 Sum_probs=90.9
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCc-HHHHHHHHHHHHHh---CCcEEEEcCChHHHHHHHHhcCCCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLN-PETYRFFDEVEKHF---GIRIEYMFPDAVEVQALVRSKGLFS 188 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~f-peT~~~~~~~~~~~---gl~i~~~~p~~~~~~~~~~~~g~~~ 188 (464)
++++++|||.||+++ +++.+.+.++..+|+|+|... .+..+.++.+++.+ +.++..+.-+.......+....
T Consensus 174 kvlvllSGGiDS~vaa~ll~krG~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~~~~--- 250 (371)
T TIGR00342 174 KVLALLSGGIDSPVAAFMMMKRGCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFTDVQEEIIHII--- 250 (371)
T ss_pred eEEEEecCCchHHHHHHHHHHcCCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHHhcC---
Confidence 599999999999776 888888888999999988544 57888999999988 4333322212222222222121
Q ss_pred CCCcchhhhhhccccchHHHHh---c--cCcEEEEeeeccCCc-ccccCCceeecCCCCcCccCCCCCeEEEEeCccCcH
Q 012415 189 FYEDGHQECCRVRKVRPLRRAL---K--GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG 262 (464)
Q Consensus 189 ~~~~~~~~Cc~~~Kv~Pl~r~l---~--~~~~~itG~R~~ES~-~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~ 262 (464)
....+|..+|..-++-+. . |.+.++||.-.+|-. .++.++...... ....-++||+.++.
T Consensus 251 ----~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~~----------~~~~I~rPLi~~~K 316 (371)
T TIGR00342 251 ----PEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQAV----------SNTPILRPLIGMDK 316 (371)
T ss_pred ----CCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhcc----------CCCCEEeCCCCCCH
Confidence 112355555542222222 1 667999999988842 122332221100 12334679999999
Q ss_pred HHHHHHHHhcCC
Q 012415 263 NDIWNFLRTMDV 274 (464)
Q Consensus 263 ~DVw~yi~~~~l 274 (464)
.||.+|.++.|.
T Consensus 317 ~EIi~~a~~iG~ 328 (371)
T TIGR00342 317 EEIIELAKEIGT 328 (371)
T ss_pred HHHHHHHHHhCC
Confidence 999999999993
No 166
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.42 E-value=1e-06 Score=64.42 Aligned_cols=61 Identities=39% Similarity=0.776 Sum_probs=51.0
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH--HcCCCCCCCEEEEEeCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKH 439 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~--~~~~I~~~PTi~lf~~g 439 (464)
|+.||++||++|+.+.+.+.++ +... .++.+..+|++.. .+... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN-KGVKFEAVDVDED-PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC-CCcEEEEEEcCCC-hHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3333 3799999999998 55552 27899999999999876
No 167
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.42 E-value=2.2e-06 Score=87.90 Aligned_cols=144 Identities=14% Similarity=0.236 Sum_probs=94.0
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhC-------CcEEEEcCCh-HHHHHHHHhc
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-------IRIEYMFPDA-VEVQALVRSK 184 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~g-------l~i~~~~p~~-~~~~~~~~~~ 184 (464)
++++++|||+||.|+ +|+.+.|.++..+|+|+| ++..+.++++++.++ +++.++.... ..+...+...
T Consensus 182 kvlvllSGGiDSpVAa~ll~krG~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~~~v~~~i~~~ 258 (381)
T PRK08384 182 KVVALLSGGIDSPVAAFLMMKRGVEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQERERIIQKLKEL 258 (381)
T ss_pred cEEEEEeCChHHHHHHHHHHHcCCeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEChHHHHHHHHHHHHh
Confidence 699999999999777 888888999999999988 677888888988877 4455553321 1233333222
Q ss_pred CCCCCCCcchhhh--hhccccchHHHHhc--cCcEEEEeeeccCCcccc--cCCceeecCCCCcCccCCCCCeEEEEeCc
Q 012415 185 GLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTR--SEIPVVQVDPVFEGLEGGVGSLVKWNPVA 258 (464)
Q Consensus 185 g~~~~~~~~~~~C--c~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R--~~~~~~~~d~~~~~~~~~~~~~~k~~PI~ 258 (464)
... . ..| |......-+.+..+ +.++++||.-.+|-. .- .++...... ..+..++||.
T Consensus 259 ~~~-----~-~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqva-SQtl~Nl~~i~~~----------~~lpilRPLi 321 (381)
T PRK08384 259 KKE-----N-YTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVA-SQTLENMYIVSQA----------SDLPIYRPLI 321 (381)
T ss_pred ccC-----C-CchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHH-HHHHHHHHHHhcc----------CCCcEEeeCC
Confidence 111 1 134 44443344444333 567999998877632 11 122221111 2356799999
Q ss_pred cCcHHHHHHHHHhcC-CCcc
Q 012415 259 NVKGNDIWNFLRTMD-VPIN 277 (464)
Q Consensus 259 dWt~~DVw~yi~~~~-lp~n 277 (464)
.++.+||-+|.++.| .++.
T Consensus 322 ~~dK~EIi~~Ar~iGT~~~s 341 (381)
T PRK08384 322 GMDKEEIVAIAKTIGTFELS 341 (381)
T ss_pred CCCHHHHHHHHHHcCCcccc
Confidence 999999999999999 7654
No 168
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.39 E-value=2.4e-06 Score=81.03 Aligned_cols=85 Identities=22% Similarity=0.299 Sum_probs=69.6
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHcCCCCCCCEEEEEeCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~----------~~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
.++.-||+||.+.|++|+.+.|++..++++| ++.+..|++|.. +..++ ++|+|..+|+++|+..+.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~~g~~-~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPDPGQA-KRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCCHHHH-HHcCCCcCCEEEEEECCC
Confidence 4788999999999999999999999999999 488888888732 27888 899999999999997666
Q ss_pred CCeeecCCCCCCHHHHHHH
Q 012415 441 SKPIKYPSERRDVDSLMAF 459 (464)
Q Consensus 441 ~~~~~y~gg~~~~e~L~~f 459 (464)
.+.....-|..+.++|.+-
T Consensus 195 ~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CeEEEEeeecCCHHHHHHh
Confidence 4333333357899988764
No 169
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.39 E-value=4.2e-06 Score=85.94 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=89.1
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHHhcC
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVRSKG 185 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~-~~-~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~----~~~~~~~g 185 (464)
++|+|+||||.||+++ +++.+. +. ++.++++|+|. .++-.+.++++++.+|++++++.-..... ...+..+.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~-~~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n~ 81 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQ-PEEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKANA 81 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhCc
Confidence 3599999999998776 777664 65 78999999984 35567789999999999988764331111 11222221
Q ss_pred CCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeec---cCCcccccCCceeecCCCCcCccCCCCCeEEEEeCcc-
Q 012415 186 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRK---DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN- 259 (464)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~---~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~d- 259 (464)
...-|..... .|+...-.-+.++.+ +.+++.+|... ||.. -|..+... ++--+.|+.+
T Consensus 82 ~~~gYpl~~~-~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~r-fe~~~~a~--------------~l~viaP~re~ 145 (394)
T PRK13820 82 LYEGYPLGTA-LARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLR-FEAVFRAS--------------DLEVIAPIREL 145 (394)
T ss_pred cccCCcCcHH-HHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHH-HHHhhHhh--------------cCeeeCchhcc
Confidence 1100100111 233332333444333 56789999843 2321 11111111 1223568888
Q ss_pred -CcHHHHHHHHHhcCCCcc
Q 012415 260 -VKGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 260 -Wt~~DVw~yi~~~~lp~n 277 (464)
++.+||-+|.++++||+.
T Consensus 146 ~ltK~ei~~ya~~~gip~~ 164 (394)
T PRK13820 146 NLTREWEIEYAKEKGIPVP 164 (394)
T ss_pred CCCHHHHHHHHHHcCCCCC
Confidence 499999999999999984
No 170
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.38 E-value=2.4e-06 Score=87.75 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=91.4
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHH-----HHHHhc
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQ-----ALVRSK 184 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~-~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~-----~~~~~~ 184 (464)
.+++|+||||.||.++ +++.+. +.++..+++|+|.. +-++.++++++++|+ +++++.- ...+. ..+..+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~--~dle~a~~~A~~lGi~~~~viD~-~~ef~~~~i~~~i~~n 79 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG--EELEPIREKALKSGASEIYVEDL-REEFVRDYVFPAIRAN 79 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH--HHHHHHHHHHHHcCCCeEEEEcC-HHHHHHHhHHHHHHhC
Confidence 3699999999998776 677665 88899999999975 567788999999997 4554421 11221 222222
Q ss_pred CCC-CCCCcchhhhhhccccchHHHHhc--cCcEEEEeeec--cCCcccccCCceeecCCCCcCccCCCCCeEEEEeCcc
Q 012415 185 GLF-SFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRK--DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 259 (464)
Q Consensus 185 g~~-~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~--~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~d 259 (464)
... .-+...... |+-.-..-+.++.+ +.+++.+|... ++- .|........+| .+--+.|+.+
T Consensus 80 ~~y~g~ypl~~~l-cr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq--~rf~~g~~al~p----------el~VisPlre 146 (399)
T PRK00509 80 ALYEGKYPLGTAL-ARPLIAKKLVEIARKEGADAVAHGCTGKGNDQ--VRFELGIAALAP----------DLKVIAPWRE 146 (399)
T ss_pred hHhcCcCCCchHH-HHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCH--HHHHHHHHHhCC----------CCeeecchhh
Confidence 110 001111112 22222333444333 56788989864 222 233222222232 2346899999
Q ss_pred C---cHHHHHHHHHhcCCCcc
Q 012415 260 V---KGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 260 W---t~~DVw~yi~~~~lp~n 277 (464)
| +.+|+-+|.+++|||+.
T Consensus 147 ~~~~tK~eir~~A~~~Gipv~ 167 (399)
T PRK00509 147 WDLKSREELIAYAEEHGIPIP 167 (399)
T ss_pred cCCCCHHHHHHHHHHcCCCCC
Confidence 9 99999999999999984
No 171
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.38 E-value=1.6e-06 Score=89.13 Aligned_cols=148 Identities=22% Similarity=0.295 Sum_probs=89.1
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY 190 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~-~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~ 190 (464)
++|+|+||||.||.++ +++.+. +.++..+++|+|. -.+-++.++++++++|++..++..-...+ +...-.+.+.
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq-~~~el~~a~~~A~~lGi~~~~v~dl~~ef---~~~~i~p~i~ 81 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQ-GIEELEGLEAKAKASGAKQLVVKDLREEF---VRDYIFPCLR 81 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEEeCHHHH---HHhhcCHHHH
Confidence 3699999999998766 677665 7789999999996 34668889999999999743332222222 2111111111
Q ss_pred Ccchhhhhhcccc---chH-----HHHhc--cCcEEEEeeec---cCCcccccCCceeecCCCCcCccCCCCCeEEEEeC
Q 012415 191 EDGHQECCRVRKV---RPL-----RRALK--GLRAWITGQRK---DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 257 (464)
Q Consensus 191 ~~~~~~Cc~~~Kv---~Pl-----~r~l~--~~~~~itG~R~---~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI 257 (464)
.+....-|+.+|. +|+ .+..+ +.+++..|... ||+ |........+| .+--+.|+
T Consensus 82 ~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~---rf~~~~~al~p----------el~ViaPl 148 (404)
T PLN00200 82 ANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQV---RFELTFFALNP----------ELKVVAPW 148 (404)
T ss_pred cCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHH---HHHHHHHHhCC----------CCeeeCch
Confidence 1111112333333 221 11111 55688878763 333 32222222232 23468999
Q ss_pred ccCc---HHHHHHHHHhcCCCcc
Q 012415 258 ANVK---GNDIWNFLRTMDVPIN 277 (464)
Q Consensus 258 ~dWt---~~DVw~yi~~~~lp~n 277 (464)
.+|. .+|+.+|.+++|||+.
T Consensus 149 re~~~~~r~e~~~~A~~~Gipv~ 171 (404)
T PLN00200 149 REWDIKGREDLIEYAKKHNIPVP 171 (404)
T ss_pred hhcCCCCHHHHHHHHHHcCCCCC
Confidence 9995 9999999999999863
No 172
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.36 E-value=5.7e-06 Score=79.21 Aligned_cols=178 Identities=14% Similarity=0.138 Sum_probs=102.3
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCCh-HHHHH-HHHhc--CCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDA-VEVQA-LVRSK--GLF 187 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~-i~~~~p~~-~~~~~-~~~~~--g~~ 187 (464)
+++|+||||.||+++ .++.+.+.++..+++|.|.....-++.++++++++|++ .+++.-+. ..+.. .+... ..+
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s~Lt~~~~~~p 82 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVP 82 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccccCC
Confidence 589999999999877 56666655788999999987788889999999999996 65542221 00000 00000 001
Q ss_pred CCC---Ccchhhh--hhccccchHHHHh---ccCcEEEEeeeccCCcccccCCc----eeecCCCCcCccCCCCCeEEEE
Q 012415 188 SFY---EDGHQEC--CRVRKVRPLRRAL---KGLRAWITGQRKDQSPGTRSEIP----VVQVDPVFEGLEGGVGSLVKWN 255 (464)
Q Consensus 188 ~~~---~~~~~~C--c~~~Kv~Pl~r~l---~~~~~~itG~R~~ES~~~R~~~~----~~~~d~~~~~~~~~~~~~~k~~ 255 (464)
... ......| |+-.=..-+...+ .+.+.+++|...++..+-|-..+ .++.--.+ + ...++--..
T Consensus 83 ~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~-~---~~~~i~I~a 158 (231)
T PRK11106 83 DYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSL-G---MAKDIRFET 158 (231)
T ss_pred ccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHHh-c---cCCCcEEEe
Confidence 100 1112223 2221122222211 26678999999988433444421 11100000 0 012355679
Q ss_pred eCccCcHHHHHHHHHhcC-CCc--chhhhc--CCcccCccCCCcc
Q 012415 256 PVANVKGNDIWNFLRTMD-VPI--NSLHSQ--GYISIGCEPCTRP 295 (464)
Q Consensus 256 PI~dWt~~DVw~yi~~~~-lp~--npLy~~--Gy~siGC~~CT~~ 295 (464)
|+++|+..||+..-+..+ +|+ .-=|.+ |...-+|=.|..-
T Consensus 159 Pl~~lsK~eI~~l~~~lg~v~~~~~~T~SCy~g~~g~~CG~C~sC 203 (231)
T PRK11106 159 PLMWLNKAETWALADYYGQLDLVRHETLTCYNGIKGDGCGHCAAC 203 (231)
T ss_pred cCCCCCHHHHHHHHHHcCCcccccCceeeccCcCCCCCCCCCHHH
Confidence 999999999999999999 887 333332 2111267666553
No 173
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.36 E-value=2e-06 Score=67.15 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=50.3
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHc-----CCCCCCCEEEEEeCCCCCeeecCCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK-----LQLGSFPTILFFPKHSSKPIKYPSER 450 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~-----~~I~~~PTi~lf~~g~~~~~~y~gg~ 450 (464)
++.||++||++|+.+.+.|.++ ++.+-.+|++.+ .... +. +++.++|++ +|.+|. .+. .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~-~~~~-~~~~~~~~~~~~vP~i-~~~~g~--~l~----~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEED-EGAA-DRVVSVNNGNMTVPTV-KFADGS--FLT----N 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCC-HhHH-HHHHHHhCCCceeCEE-EECCCe--Eec----C
Confidence 6789999999999999988765 356667888877 5544 44 488999997 576665 332 2
Q ss_pred CCHHHHHHHHH
Q 012415 451 RDVDSLMAFVD 461 (464)
Q Consensus 451 ~~~e~L~~fI~ 461 (464)
.+..++.+.++
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 35556766654
No 174
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.36 E-value=3.7e-06 Score=85.59 Aligned_cols=123 Identities=18% Similarity=0.164 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcC--CcEEEEechhHHHHHH-HHHH-HcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012415 101 LEIMDRALEKFG--NDIAIAFSGAEDVALI-EYAH-LTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (464)
Q Consensus 101 ~eil~~a~~~~~--~~i~vafSGGKDS~ll-~L~~-~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 176 (464)
.++++++....+ -.++|++|||+||+++ +++. +.+.++.++++|+|...+...+.++++++++|++++.+.++...
T Consensus 46 ~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~ 125 (343)
T TIGR03573 46 EELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPET 125 (343)
T ss_pred HHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHH
Confidence 344444443322 2499999999999766 6764 46767777899999988888899999999999999999887665
Q ss_pred HHHHHHhcCCCCCCCcchhhhhhccccchHHHHhc-cCcEEEEeeeccCC
Q 012415 177 VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQS 225 (464)
Q Consensus 177 ~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~R~~ES 225 (464)
+..+.... +.. .......|.......+.+.+.+ +..++++|...+|-
T Consensus 126 ~~~l~~~~-~~~-~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~ 173 (343)
T TIGR03573 126 FRKLQRAY-FKK-VGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIAEE 173 (343)
T ss_pred HHHHHHHH-Hhc-cCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHh
Confidence 44333211 100 0111233445555555555554 57799999998874
No 175
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.35 E-value=2.9e-06 Score=78.58 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCCcE-EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 012415 371 RQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 414 (464)
Q Consensus 371 ~~k~v-lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d 414 (464)
.++++ |+.+||+||++|+..+|.++++.++|++.++.|+.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 46654 456699999999999999999999998767999999864
No 176
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.32 E-value=2.4e-06 Score=74.89 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=64.7
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHcCCCCC
Q 012415 371 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 429 (464)
Q Consensus 371 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------~~~l~~~~~~I~~ 429 (464)
.++++||+|| +.||+.|....+.+.++.+++.+.++.++.|..+.. +..+. +.|++..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLA-KAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHH-HHhCCcc
Confidence 4789999999 589999999999999999999766788888876542 14577 7889888
Q ss_pred C---------CEEEEEeCCCCCeeecCCCCCCHHHHHHH
Q 012415 430 F---------PTILFFPKHSSKPIKYPSERRDVDSLMAF 459 (464)
Q Consensus 430 ~---------PTi~lf~~g~~~~~~y~gg~~~~e~L~~f 459 (464)
. |+++++...++....+.| ....+++.+-
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g-~~~~~~~~~~ 138 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRK-VKPKGHAEEV 138 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEec-CCccchHHHH
Confidence 7 899999754443445555 3455555443
No 177
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.32 E-value=4e-06 Score=86.85 Aligned_cols=156 Identities=14% Similarity=0.170 Sum_probs=96.0
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCC-CCcHHHHHHHHHHHHHhC-----CcEEEEcCChHHHHHHHHhcCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHFG-----IRIEYMFPDAVEVQALVRSKGL 186 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg-~~fpeT~~~~~~~~~~~g-----l~i~~~~p~~~~~~~~~~~~g~ 186 (464)
++++++|||.||+++ +++.+.+.++..+|+++. +.-+...+.+.+++++++ ++++++.-. .....+....
T Consensus 178 kvvvllSGGiDS~vaa~l~~k~G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~--~~~~~i~~~~- 254 (394)
T PRK01565 178 KALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFT--EIQEEIKKKV- 254 (394)
T ss_pred CEEEEECCChhHHHHHHHHHHCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECH--HHHHHHhhcC-
Confidence 589999999999877 787777888888888773 444666777888887774 777666322 2212222111
Q ss_pred CCCCCcchhhhhhccccchHH---HHhc--cCcEEEEeeeccCCc-ccccCCceeecCCCCcCccCCCCCeEEEEeCccC
Q 012415 187 FSFYEDGHQECCRVRKVRPLR---RALK--GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 260 (464)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~---r~l~--~~~~~itG~R~~ES~-~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dW 260 (464)
+ .+.+|..+|..-++ .... +..+++||...+|-. .++.++..++.. ..+.-++||+.+
T Consensus 255 ---~---~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~~i~~~----------~~~~V~rPLig~ 318 (394)
T PRK01565 255 ---P---ESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMYAINAV----------TNLPVLRPLIGM 318 (394)
T ss_pred ---C---CceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHHHhhc----------cCcEEEECCCCC
Confidence 1 12344444432222 2222 667999999987753 134433222110 124457999999
Q ss_pred cHHHHHHHHHhcCCCcchhhhcCCcccCccCCCc
Q 012415 261 KGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTR 294 (464)
Q Consensus 261 t~~DVw~yi~~~~lp~npLy~~Gy~siGC~~CT~ 294 (464)
+..||.++-++.|+. ++..+ .+-.| ||+
T Consensus 319 ~K~EI~~lAr~iG~~--~~s~~--p~~~c--c~~ 346 (394)
T PRK01565 319 DKEEIIEIAKEIGTY--DISIL--PYEDC--CTI 346 (394)
T ss_pred CHHHHHHHHHHhCCH--HHhcC--CCcCe--eee
Confidence 999999999999942 33333 34457 774
No 178
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.31 E-value=2.8e-06 Score=78.91 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=68.8
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------cHHHHHHcC
Q 012415 371 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL 425 (464)
Q Consensus 371 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~------------------------~~~l~~~~~ 425 (464)
.++++||+|| +.||++|....+.|.++.+++.+.++.++.|.+|.. +..++ +.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a-~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLT-RNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHH-HHh
Confidence 4689999999 999999999999999999999766788888876531 13567 788
Q ss_pred CCC------CCCEEEEEe-CCCCCeeecC--CCCCCHHHHHHHHHHhC
Q 012415 426 QLG------SFPTILFFP-KHSSKPIKYP--SERRDVDSLMAFVDALR 464 (464)
Q Consensus 426 ~I~------~~PTi~lf~-~g~~~~~~y~--gg~~~~e~L~~fI~~l~ 464 (464)
+|. ..|+.+++. +|......+. ...++.++|.+.|++++
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~ 156 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQ 156 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 886 469999996 5553222211 11368899998887653
No 179
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.31 E-value=1.7e-06 Score=73.97 Aligned_cols=69 Identities=25% Similarity=0.546 Sum_probs=59.5
Q ss_pred CCCcEEEEEecC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------HHHHHHcCCCC-
Q 012415 371 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG- 428 (464)
Q Consensus 371 ~~k~vlV~Fya~-wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~--------------------~~l~~~~~~I~- 428 (464)
.++++||.||+. ||++|+...+.+.++.++++..++.|+.|..+..+ .+++ +.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELA-KAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHH-HHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHH-HHcCCcc
Confidence 469999999999 99999999999999999998767999999876531 3577 788888
Q ss_pred -----CCCEEEEEeCCC
Q 012415 429 -----SFPTILFFPKHS 440 (464)
Q Consensus 429 -----~~PTi~lf~~g~ 440 (464)
.+|+++++..++
T Consensus 103 ~~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDG 119 (124)
T ss_dssp TTTSEESEEEEEEETTS
T ss_pred ccCCceEeEEEEECCCC
Confidence 899999997766
No 180
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.30 E-value=4.4e-06 Score=85.65 Aligned_cols=146 Identities=18% Similarity=0.274 Sum_probs=93.2
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHH--------
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVR-------- 182 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~~~~~-------- 182 (464)
.+++|+||||-||+++ .++.+.+.++..+++|.|....+=++.++++++++|+ +.+++.-.......++.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~ 82 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEG 82 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchh
Confidence 4599999999998766 7777778889999999998767778889999999998 46665333222222221
Q ss_pred hcCCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeee---ccCCcccccCCceeecCCCCcCccCCCCCeEEEEeC
Q 012415 183 SKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQR---KDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 257 (464)
Q Consensus 183 ~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R---~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI 257 (464)
..|....+. ...|. |..-+.+..+ +.+++.+|.. .||. |......... .+--+.|+
T Consensus 83 y~G~yPl~~--~nR~~---~~~~l~e~A~~~G~~~IA~G~tgkgnDq~---rfrpg~~Al~-----------el~ViaPl 143 (400)
T PRK04527 83 YQGQYPLLV--SDRYL---IVDAALKRAEELGTRIIAHGCTGMGNDQV---RFDLAVKALG-----------DYQIVAPI 143 (400)
T ss_pred hcCCCCCcc--ccHHH---HHHHHHHHHHHCCCCEEEecCcCCCCchh---hccHHHHHhh-----------cCCccchH
Confidence 122221111 12233 4444444443 6678999985 3332 3322221111 12247899
Q ss_pred ccC------cHHHHHHHHHhcCCCcc
Q 012415 258 ANV------KGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 258 ~dW------t~~DVw~yi~~~~lp~n 277 (464)
.+| ..+|.-+|+++||||+.
T Consensus 144 re~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 144 REIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred HHhcCcccccHHHHHHHHHHcCCCCC
Confidence 998 56777999999999984
No 181
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.29 E-value=3.1e-06 Score=80.05 Aligned_cols=174 Identities=19% Similarity=0.276 Sum_probs=88.4
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCC-hHHH--HHHHHhc-CCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPD-AVEV--QALVRSK-GLF 187 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~-~~~~--~~~~~~~-g~~ 187 (464)
+++|.||||.||+++ +++.+.+.++..+++|.|.....-++.++++++++|+ +.+++.-. ...+ -.+.... .++
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~~~v~ 80 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSALTDDSIEVP 80 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHHTT----
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCcccCCCcCCc
Confidence 368899999999876 6777777889999999998888889999999999999 77666322 1110 0111111 011
Q ss_pred CCCCcchhhhhhccccchHHHHhc-----------cCcEEEEeeeccCCcccccCCcee-ec-CCCCcCccCCCCCeEEE
Q 012415 188 SFYEDGHQECCRVRKVRPLRRALK-----------GLRAWITGQRKDQSPGTRSEIPVV-QV-DPVFEGLEGGVGSLVKW 254 (464)
Q Consensus 188 ~~~~~~~~~Cc~~~Kv~Pl~r~l~-----------~~~~~itG~R~~ES~~~R~~~~~~-~~-d~~~~~~~~~~~~~~k~ 254 (464)
. .....--.-.-..|.|..+- +...+++|.-+++..+-....+.+ +. ...+. .+..+++--.
T Consensus 81 ~---~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~--~~~~~~v~i~ 155 (209)
T PF06508_consen 81 E---EEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLN--LGEGGPVRIE 155 (209)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHH--HHHTS--EEE
T ss_pred c---cccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHHH--hcCCCCEEEE
Confidence 1 00000000011234443331 557889999988842111111111 00 00000 0011346667
Q ss_pred EeCccCcHHHHHHHHHhcCCCcchhhhcCCcc----cCccCCC
Q 012415 255 NPVANVKGNDIWNFLRTMDVPINSLHSQGYIS----IGCEPCT 293 (464)
Q Consensus 255 ~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~s----iGC~~CT 293 (464)
.|+++|+..||+..-...++|+.--|.+ |.+ .+|-.|.
T Consensus 156 ~P~~~~tK~eiv~~~~~lg~~~~~T~SC-y~~~~~~~~CG~C~ 197 (209)
T PF06508_consen 156 TPLIDLTKAEIVKLGVELGVPLELTWSC-YRGGEKGKHCGRCP 197 (209)
T ss_dssp -TTTT--HHHHHHHHHHTTHHHHH-B-S-TTS--BTTTTSSSH
T ss_pred ecCCCCCHHHHHHHHHHcCCCHHHccCC-CCCCCCCCCCCCCH
Confidence 9999999999999999999888766665 333 4666664
No 182
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=9.8e-06 Score=71.16 Aligned_cols=89 Identities=19% Similarity=0.344 Sum_probs=71.1
Q ss_pred CCCCcEEEEEecCCChhHHhhHHHHH---HHHHHhcCCCeEEEEEEcCCCc---------------HHHHHHcCCCCCCC
Q 012415 370 HRQEPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGDQ---------------KEYAKQKLQLGSFP 431 (464)
Q Consensus 370 ~~~k~vlV~Fya~wC~~C~~~~p~~~---~la~~~~~~~v~~~~Id~d~~~---------------~~l~~~~~~I~~~P 431 (464)
..++..+++|-++.|++|..++..+. ++.+.+.+ ++.++.+|+...+ .+++ +.|.|+++|
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa-~kf~vrstP 117 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELA-QKFAVRSTP 117 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHH-HHhccccCc
Confidence 36899999999999999999998774 66666766 7889999875531 5899 999999999
Q ss_pred EEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 432 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 432 Ti~lf~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
|++||+..++.....+| ....+++...++
T Consensus 118 tfvFfdk~Gk~Il~lPG-Y~ppe~Fl~vlk 146 (182)
T COG2143 118 TFVFFDKTGKTILELPG-YMPPEQFLAVLK 146 (182)
T ss_pred eEEEEcCCCCEEEecCC-CCCHHHHHHHHH
Confidence 99999766544556666 788888776654
No 183
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.29 E-value=5.2e-06 Score=76.02 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=67.8
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 012415 371 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 422 (464)
Q Consensus 371 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---------------------------~~~l~~ 422 (464)
.++++||+|| +.||++|....+.|.++.++|.+.++.++.|..|.. +..++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~- 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS- 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH-
Confidence 4689999999 899999999999999999999866788888876532 13456
Q ss_pred HcCCCC------CCCEEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 012415 423 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL 463 (464)
Q Consensus 423 ~~~~I~------~~PTi~lf~~g~~~~~~y~g---g~~~~e~L~~fI~~l 463 (464)
+.|++. ..|+++++.........+.+ ..++.++|.+.|+++
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677875 57899999755433333311 135788888888765
No 184
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.20 E-value=1.4e-05 Score=81.35 Aligned_cols=157 Identities=14% Similarity=0.064 Sum_probs=94.6
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH----HHH--hcC
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA----LVR--SKG 185 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~----~~~--~~g 185 (464)
.+|+|++|||.||+++ +++.+.+.++..+++|.. .+..+.++++++++|++++++.-....... ++. ..|
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL~~~G~eV~av~~~~~---~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G 82 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW---GDEPQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQG 82 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecCc---chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcC
Confidence 4699999999999775 777777888888999874 234467999999999998776433211111 111 122
Q ss_pred CCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeec-CCC-CcCc--cCCCCCe--EEEEeC
Q 012415 186 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV-DPV-FEGL--EGGVGSL--VKWNPV 257 (464)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~-d~~-~~~~--~~~~~~~--~k~~PI 257 (464)
.. + ..--.|-...|..-|.++.. +.+.+.||.-..-.. .-.....+.. |.. .+.. ....+.. ..+.||
T Consensus 83 ~t--p-npC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~-~~~~~~l~~g~D~~kDQsyfl~~l~~~~l~~~ifPL 158 (362)
T PRK14664 83 RT--P-NPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEE-RNGHIYIVAGDDDKKDQSYFLWRLGQDILRRCIFPL 158 (362)
T ss_pred CC--C-CCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccccc-CCCeEEEEEcCCCcchHHHHHHhcCHHHHhHHhccC
Confidence 21 1 12234444667666666654 556889998764331 1011111111 110 0000 0000111 357899
Q ss_pred ccCcHHHHHHHHHhcCCCc
Q 012415 258 ANVKGNDIWNFLRTMDVPI 276 (464)
Q Consensus 258 ~dWt~~DVw~yi~~~~lp~ 276 (464)
.+++.+||..|.+.+|||.
T Consensus 159 g~~~K~evr~~A~~~gl~~ 177 (362)
T PRK14664 159 GNYTKQTVREYLREKGYEA 177 (362)
T ss_pred ccCCHHHHHHHHHHcCCCC
Confidence 9999999999999999975
No 185
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.19 E-value=9.5e-06 Score=72.62 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=57.1
Q ss_pred CCCcEEEEEecC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHcCCCCC
Q 012415 371 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 429 (464)
Q Consensus 371 ~~k~vlV~Fya~-wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------~~~l~~~~~~I~~ 429 (464)
.++++||+||+. ||+.|....+.+.++.+.+++.++.|+.|+.+.. +..+. +.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVA-EQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHH-HHhCCCc
Confidence 468999999976 6888999999999999999876788988886543 13566 7788764
Q ss_pred C------------CEEEEEeCCCCCeeecCC
Q 012415 430 F------------PTILFFPKHSSKPIKYPS 448 (464)
Q Consensus 430 ~------------PTi~lf~~g~~~~~~y~g 448 (464)
. |+.++++..++....+.|
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 3 677788644433445554
No 186
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.17 E-value=1.3e-05 Score=74.52 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------cHHHHHHcC
Q 012415 371 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL 425 (464)
Q Consensus 371 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~------------------------~~~l~~~~~ 425 (464)
.++++||+|| +.||+.|....+.|.++.+++.+.++.++.|+.|.. +..++ +.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia-~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALT-RNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHH-HHc
Confidence 4678999999 999999999999999999999766788888876542 14677 788
Q ss_pred CC----CCC--CEEEEEe-CCCCCeee-cC-CCCCCHHHHHHHHHHhC
Q 012415 426 QL----GSF--PTILFFP-KHSSKPIK-YP-SERRDVDSLMAFVDALR 464 (464)
Q Consensus 426 ~I----~~~--PTi~lf~-~g~~~~~~-y~-gg~~~~e~L~~fI~~l~ 464 (464)
++ .++ |+.+++. +|+.+... +. +..++.+++.+.|++++
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 88 356 9999996 44422111 21 22479999999998875
No 187
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.17 E-value=5.4e-05 Score=64.16 Aligned_cols=104 Identities=19% Similarity=0.352 Sum_probs=80.4
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHH-HHhcC-CCeEEEEEEcCCC----cHHHHHHcC
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELA-DKLAG-NGVKVGKFRADGD----QKEYAKQKL 425 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la-~~~~~-~~v~~~~Id~d~~----~~~l~~~~~ 425 (464)
...+.|+.-+|++++. +.+.+||.|=... |--.-...|.+++ +..+. +++-++.|-+.+. |.+|+ ++|
T Consensus 4 ~G~v~LD~~tFdKvi~---kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~La-ery 77 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIP---KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELA-ERY 77 (126)
T ss_dssp TTSEEESTTHHHHHGG---GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHH-HHT
T ss_pred Cceeeccceehhheec---cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHH-HHh
Confidence 4678899999999997 7899999998654 4445577888999 54443 5799999987542 48999 999
Q ss_pred CC--CCCCEEEEEeCCCCCeeec--CCCCCCHHHHHHHHHH
Q 012415 426 QL--GSFPTILFFPKHSSKPIKY--PSERRDVDSLMAFVDA 462 (464)
Q Consensus 426 ~I--~~~PTi~lf~~g~~~~~~y--~gg~~~~e~L~~fI~~ 462 (464)
+| ..||.+++|..+...++.| .+ ..+.++|..|+++
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~-~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDG-DVTADNLQRFVKS 117 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS--S-HHHHHHHHHH
T ss_pred CCCcccCCEEEEecCCCCCCccCCccC-CccHHHHHHHHHh
Confidence 99 6799999999777778988 55 7999999999975
No 188
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.16 E-value=4.6e-06 Score=73.99 Aligned_cols=69 Identities=16% Similarity=0.365 Sum_probs=56.5
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCc------------------------HHHHHHc
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQ------------------------KEYAKQK 424 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~Id~d~~~------------------------~~l~~~~ 424 (464)
.+|.|.++|-|.||++|+.+.|.+.++.+.++.. .+-++-|+.|.+. .+++ ++
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~-~k 110 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS-EK 110 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH-Hh
Confidence 5799999999999999999999999999988762 3667777666541 3577 89
Q ss_pred CCCCCCCEEEEEeCCC
Q 012415 425 LQLGSFPTILFFPKHS 440 (464)
Q Consensus 425 ~~I~~~PTi~lf~~g~ 440 (464)
|.|.++|++.+.+..+
T Consensus 111 y~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDG 126 (157)
T ss_pred cccCcCceeEEecCCC
Confidence 9999999999985444
No 189
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.15 E-value=1.9e-05 Score=78.01 Aligned_cols=103 Identities=21% Similarity=0.336 Sum_probs=74.1
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhh------HHHHHHHHHH-hcCCCeEEEEEEcCCCcHHHHHHc
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAM------EGSYVELADK-LAGNGVKVGKFRADGDQKEYAKQK 424 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~------~p~~~~la~~-~~~~~v~~~~Id~d~~~~~l~~~~ 424 (464)
..|+.||..||++.++ ..+..+|+||.|-- .-+.. ...+-+|+.+ +...+|.|+.||..++ ..++ ++
T Consensus 34 DRVi~LneKNfk~~lK---kyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd-~klA-KK 107 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALK---KYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD-AKLA-KK 107 (383)
T ss_dssp --CEEE-TTTHHHHHH---H-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT-HHHH-HH
T ss_pred cceEEcchhHHHHHHH---hhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH-HHHH-Hh
Confidence 6899999999999987 67788888888763 22322 2223344444 3446899999999999 9999 99
Q ss_pred CCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 425 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 425 ~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+++...+++.+|++|. .+.|.| .++++.|+.||-.+
T Consensus 108 Lgv~E~~SiyVfkd~~--~IEydG-~~saDtLVeFl~dl 143 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGE--VIEYDG-ERSADTLVEFLLDL 143 (383)
T ss_dssp HT--STTEEEEEETTE--EEEE-S---SHHHHHHHHHHH
T ss_pred cCccccCcEEEEECCc--EEEecC-ccCHHHHHHHHHHh
Confidence 9999999999999999 899998 89999999999654
No 190
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.12 E-value=1.4e-05 Score=68.41 Aligned_cols=97 Identities=15% Similarity=0.315 Sum_probs=60.2
Q ss_pred chHHHHHhh-cCCCCcEEEEEec-------CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------cHHHHHH--
Q 012415 360 TGMENLARL-DHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQ-- 423 (464)
Q Consensus 360 ~~f~~~i~~-~~~~k~vlV~Fya-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~------~~~l~~~-- 423 (464)
++|.++++. .+.+++++|+|++ +|||.|...+|.+++......+ +..|+.+.+..- +..+- .
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR-~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFR-TDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHH-H--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCce-Ecc
Confidence 455666553 2456899999996 5999999999999998888655 788888877432 02444 3
Q ss_pred cCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 424 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 424 ~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
+++|.++||++-+..+++ ...-. -.+.+-|..|++
T Consensus 84 ~~~l~~IPTLi~~~~~~r-L~e~e--~~~~~lv~~~~e 118 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGER-LVEEE--CLNEDLVEMFFE 118 (119)
T ss_dssp CC---SSSEEEECTSS-E-EEHHH--HH-HHHHHHHHH
T ss_pred eeeeeecceEEEECCCCc-cchhh--hccHHHHHHHhc
Confidence 699999999999977642 22221 234555555554
No 191
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.11 E-value=1.4e-05 Score=70.79 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=60.9
Q ss_pred CcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------c--HHHHHHcCCCC-
Q 012415 373 EPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------Q--KEYAKQKLQLG- 428 (464)
Q Consensus 373 k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------~--~~l~~~~~~I~- 428 (464)
++++|.|| ++||+.|....|.+.++.+++.+.++.++.|+.+.. + ..+. +.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~g~~~ 107 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA-KAYGVFD 107 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH-HHhCCcc
Confidence 78888887 999999999999999999999866788888876541 1 3466 677876
Q ss_pred ---CC--CEEEEEeCCCCCeeecCCC---CCCHHHHHHHHH
Q 012415 429 ---SF--PTILFFPKHSSKPIKYPSE---RRDVDSLMAFVD 461 (464)
Q Consensus 429 ---~~--PTi~lf~~g~~~~~~y~gg---~~~~e~L~~fI~ 461 (464)
++ |+++++...++....+.|. .++..++.+-|+
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 33 3788886433323333332 355666665554
No 192
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.11 E-value=1.9e-05 Score=72.02 Aligned_cols=88 Identities=11% Similarity=0.183 Sum_probs=63.3
Q ss_pred CCCcEEEEEecCC-ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------cHHHHHHcCCC
Q 012415 371 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL 427 (464)
Q Consensus 371 ~~k~vlV~Fya~w-C~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~----------------------~~~l~~~~~~I 427 (464)
.++++||+||+.| |++|....|.|.++.+++. ++.++.|+.|.. ...++ +.|++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~-~~~gv 119 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFG-KAYGV 119 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHH-HHhCC
Confidence 4789999999999 9999999999999999984 588888876531 12677 78888
Q ss_pred CCCC---------EEEEEeCCCCCeeec--C--CCCCCHHHHHHHHH
Q 012415 428 GSFP---------TILFFPKHSSKPIKY--P--SERRDVDSLMAFVD 461 (464)
Q Consensus 428 ~~~P---------Ti~lf~~g~~~~~~y--~--gg~~~~e~L~~fI~ 461 (464)
...| +.+++...+.....+ . ....+.+++.++|+
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 8777 888886444322222 1 12346677777664
No 193
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.09 E-value=1.8e-05 Score=69.81 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=37.1
Q ss_pred CCcEEEEE-ecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012415 372 QEPWLVVL-YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 416 (464)
Q Consensus 372 ~k~vlV~F-ya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~ 416 (464)
+++++|.| +++||++|+...|.+.++.+++.+.++.++.|+.+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 45555555 5999999999999999999999765799999987654
No 194
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.09 E-value=5.3e-05 Score=69.34 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=85.7
Q ss_pred CCeeecCcchHHHHHhhcCCCCc-EEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC--
Q 012415 352 QNLVTLNRTGMENLARLDHRQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG-- 428 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~-vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~-- 428 (464)
+.|.++|.+++..+.. .+.+ +++.|+.........+...+.++++.+.+ .+.|+.+|++.. +.++ +.|++.
T Consensus 77 P~v~~~t~~n~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~-~~~~-~~~~i~~~ 150 (184)
T PF13848_consen 77 PLVPELTPENFEKLFS---SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDF-PRLL-KYFGIDED 150 (184)
T ss_dssp TSCEEESTTHHHHHHS---TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTT-HHHH-HHTTTTTS
T ss_pred ccccccchhhHHHHhc---CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHh-HHHH-HHcCCCCc
Confidence 4699999999999886 5555 88888877788899999999999999988 799999999988 8899 899998
Q ss_pred CCCEEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 012415 429 SFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 429 ~~PTi~lf~~g~~~-~~~y~gg~~~~e~L~~fI~~ 462 (464)
.+|+++++.....+ ...+.+ ..+.++|.+||+.
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~-~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEG-EITPESIEKFLND 184 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SS-CGCHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCC-CCCHHHHHHHhcC
Confidence 89999999843332 223344 8999999999974
No 195
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.06 E-value=3.5e-05 Score=74.66 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=69.7
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHcCCCCCCCEEEEEeCCCC
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS 441 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~----------~~~l~~~~~~I~~~PTi~lf~~g~~ 441 (464)
++.-||+||.+-|++|+++.|++..++++| ++.+..|++|.. +..++ ++++|..+|++++...+..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIPGLPNSRSDSGQA-QHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCccCChHHH-HhcCCccCceEEEEECCCC
Confidence 569999999999999999999999999999 588888888765 14578 8999999999999976654
Q ss_pred CeeecCCCCCCHHHHHHHHH
Q 012415 442 KPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 442 ~~~~y~gg~~~~e~L~~fI~ 461 (464)
+.....-|..+.++|.+-|-
T Consensus 226 ~~~pv~~G~iS~deL~~Ri~ 245 (256)
T TIGR02739 226 KMSPLAYGFISQDELKERIL 245 (256)
T ss_pred cEEEEeeccCCHHHHHHHHH
Confidence 43333335799999976554
No 196
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=1.9e-05 Score=66.36 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=60.5
Q ss_pred chHHHHHhhcCCCCcEEEEEec--------CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------cHHHHHHcC
Q 012415 360 TGMENLARLDHRQEPWLVVLYA--------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQKL 425 (464)
Q Consensus 360 ~~f~~~i~~~~~~k~vlV~Fya--------~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~------~~~l~~~~~ 425 (464)
++|++.++....++.++|+|++ +|||.|.+.+|.+.+.-+.... ++.|+.+++.+- +..+- ..+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR-~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFR-KDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccc-cCC
Confidence 5677776655456779999997 7999999999999998886655 799999998653 13455 566
Q ss_pred CC-CCCCEEEEEeC
Q 012415 426 QL-GSFPTILFFPK 438 (464)
Q Consensus 426 ~I-~~~PTi~lf~~ 438 (464)
++ .++||++=|++
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 66 89999999975
No 197
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.04 E-value=2.7e-05 Score=73.30 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=67.4
Q ss_pred CCcEEE-EEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHHc
Q 012415 372 QEPWLV-VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK 424 (464)
Q Consensus 372 ~k~vlV-~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------------~~~l~~~~ 424 (464)
++.++| .|+++||+.|....+.|.++.++|++.++.++.|++|.. +..++ +.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia-~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA-RE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH-HH
Confidence 555554 688999999999999999999999866788888876531 14677 78
Q ss_pred CCCC------CCCEEEEEeCCCCC-eee-c--CCCCCCHHHHHHHHHHhC
Q 012415 425 LQLG------SFPTILFFPKHSSK-PIK-Y--PSERRDVDSLMAFVDALR 464 (464)
Q Consensus 425 ~~I~------~~PTi~lf~~g~~~-~~~-y--~gg~~~~e~L~~fI~~l~ 464 (464)
|++. .+|+++++..++.. .+. | .+ .++.+++.+.|+.++
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~-gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAET-GRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCC-CCCHHHHHHHHHHhh
Confidence 8884 58999999654432 111 2 23 489999999998774
No 198
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.04 E-value=2.5e-05 Score=72.96 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=77.2
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcH------HHHHHHHHHHHHhCCcEEEEcCC--hHHHHHHHHhc
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNP------ETYRFFDEVEKHFGIRIEYMFPD--AVEVQALVRSK 184 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fp------eT~~~~~~~~~~~gl~i~~~~p~--~~~~~~~~~~~ 184 (464)
+++++|||||||+++ +++.+.+.++..+++++..... .-.+.++++++.+|++++++.-. .....+.+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l--- 77 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDL--- 77 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHH---
Confidence 378999999999876 8888888777777777654322 14678899999999998776321 11111000
Q ss_pred CCCCCCCcchhhhhhccccchHHHHhccCcEEEEeeeccCCcccccCCc-eeecCCCCcCccCCCCCeEEEEeCccCcHH
Q 012415 185 GLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIP-VVQVDPVFEGLEGGVGSLVKWNPVANVKGN 263 (464)
Q Consensus 185 g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~-~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~ 263 (464)
. ..+..+++. +.++++.|...++- .|.... +++. -++.-+.||..-..+
T Consensus 78 ------------~---~~l~~~~~~--g~~~vv~G~i~sd~--~~~~~e~~~~~-----------~gl~~~~PLW~~~~~ 127 (194)
T cd01994 78 ------------K---ELLRKLKEE--GVDAVVFGAILSEY--QRTRVERVCER-----------LGLEPLAPLWGRDQE 127 (194)
T ss_pred ------------H---HHHHHHHHc--CCCEEEECccccHH--HHHHHHHHHHH-----------cCCEEEecccCCCHH
Confidence 0 001111111 57799999988886 333322 2211 157789999998888
Q ss_pred HHHHHH
Q 012415 264 DIWNFL 269 (464)
Q Consensus 264 DVw~yi 269 (464)
++..=+
T Consensus 128 ~ll~e~ 133 (194)
T cd01994 128 ELLREM 133 (194)
T ss_pred HHHHHH
Confidence 765543
No 199
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.03 E-value=1.1e-05 Score=64.16 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=44.7
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcH----HHHHHcCCCCCCCEEEEEeCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~----~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
++.|+++||++|+.+.+.+.++. ..+ .+.+..||.+.+.. .+. +.+++.++|+++ -+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~-~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLE-EITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHH-HHhCCCCCCeEE--ECCE
Confidence 57899999999999999999876 332 47788888775522 255 667899999984 4555
No 200
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.03 E-value=1.5e-05 Score=69.44 Aligned_cols=98 Identities=19% Similarity=0.318 Sum_probs=55.4
Q ss_pred cCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcC---CCCCCCEE
Q 012415 357 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL---QLGSFPTI 433 (464)
Q Consensus 357 L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~---~I~~~PTi 433 (464)
++++..+.+.. ...+..++.|..+|||.|....|.+.++++..+ ++.+-.+..|.+ +++. ++| +..++||+
T Consensus 28 l~~~~~~~l~~--~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~-~el~-~~~lt~g~~~IP~~ 101 (129)
T PF14595_consen 28 LSEEQIEKLKS--IQKPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDEN-KELM-DQYLTNGGRSIPTF 101 (129)
T ss_dssp --HHHHHHHHT----S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHH-HHHT-TTTTT-SS--SSEE
T ss_pred CCHHHHHHHHh--cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCC-hhHH-HHHHhCCCeecCEE
Confidence 44444444332 245678888999999999999999999999865 488888888877 7766 444 57899999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 434 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 434 ~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+++.++.. .+..-| + ..+.+.++++++
T Consensus 102 I~~d~~~~-~lg~wg-e-rP~~~~~~~~~~ 128 (129)
T PF14595_consen 102 IFLDKDGK-ELGRWG-E-RPKEVQELVDEY 128 (129)
T ss_dssp EEE-TT---EEEEEE-S-S-HHHH------
T ss_pred EEEcCCCC-EeEEEc-C-CCHHHhhccccC
Confidence 99966532 443334 2 345566666654
No 201
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.00 E-value=2.7e-05 Score=68.64 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=52.4
Q ss_pred CCCcEEEEEecCC-ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------c-HHHHHHcCCC
Q 012415 371 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------Q-KEYAKQKLQL 427 (464)
Q Consensus 371 ~~k~vlV~Fya~w-C~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---------------------~-~~l~~~~~~I 427 (464)
.++++||+||+.| |++|+..+|.|.++.+++. ++.|+.|+.+.. . ..++ +.|++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~~gv 101 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFG-KAYGV 101 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHH-HHhCC
Confidence 4689999999998 6999999999999999985 588888887532 1 3456 67777
Q ss_pred CC------CCEEEEEe-CCC
Q 012415 428 GS------FPTILFFP-KHS 440 (464)
Q Consensus 428 ~~------~PTi~lf~-~g~ 440 (464)
.. .|+.+++. +|+
T Consensus 102 ~~~~~~~~~~~~~iid~~G~ 121 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGK 121 (143)
T ss_pred eeccCCccceEEEEEcCCCe
Confidence 53 68888886 454
No 202
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.97 E-value=3.7e-05 Score=81.80 Aligned_cols=142 Identities=17% Similarity=0.189 Sum_probs=88.9
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCc-HH-HHHHHHHHHHHhC--Cc--EEEEcCChHHHHHHHHhcCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLN-PE-TYRFFDEVEKHFG--IR--IEYMFPDAVEVQALVRSKGL 186 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~f-pe-T~~~~~~~~~~~g--l~--i~~~~p~~~~~~~~~~~~g~ 186 (464)
++++.+|||+||+++ +++.+.+.++..+|+|.|... .+ ..+..++++++|+ .+ ++.+. ..+....+.. ..
T Consensus 179 k~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~--~~~~~~~i~~-~~ 255 (482)
T PRK01269 179 DVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVD--FEPVVGEILE-KV 255 (482)
T ss_pred eEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEe--cHHHHHHHHh-cC
Confidence 588999999999877 888788888999999999653 32 5778888888887 34 44432 2222222211 11
Q ss_pred CCCCCcchhhhhhccccchH---HHHhc--cCcEEEEeeeccCCcc-cccCCceeecCCCCcCccCCCCCeEEEEeCccC
Q 012415 187 FSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 260 (464)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl---~r~l~--~~~~~itG~R~~ES~~-~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dW 260 (464)
....||-+.|..-+ ..+.. |.++++||.-.+|-.. +-.++... .+. .++.-+.||+.+
T Consensus 256 ------~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~--~~~--------~~~~v~rPLi~~ 319 (482)
T PRK01269 256 ------DDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLI--DNV--------TDTLILRPLIAM 319 (482)
T ss_pred ------CCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhh--hhh--------cCCceecCCcCC
Confidence 12236555553333 11111 6679999999888421 11111111 110 123345999999
Q ss_pred cHHHHHHHHHhcCC
Q 012415 261 KGNDIWNFLRTMDV 274 (464)
Q Consensus 261 t~~DVw~yi~~~~l 274 (464)
+..||..|-+..|+
T Consensus 320 dK~EIi~~a~~ig~ 333 (482)
T PRK01269 320 DKEDIIDLAREIGT 333 (482)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999999997
No 203
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.96 E-value=6.5e-05 Score=72.44 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=68.1
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHcCCCCCCCEEEEEeCCCC
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS 441 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~----------~~~l~~~~~~I~~~PTi~lf~~g~~ 441 (464)
++.-|++||.+.|++|+++.|++..++++| ++.+..|++|.. +...+ ++++|..+|++++...+..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVINPLLPDSRTDQGQA-QRLGVKYFPALMLVDPKSG 218 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCCccChhHH-HhcCCcccceEEEEECCCC
Confidence 569999999999999999999999999999 578888887752 14567 7999999999999976654
Q ss_pred C--eeecCCCCCCHHHHHHHHH
Q 012415 442 K--PIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 442 ~--~~~y~gg~~~~e~L~~fI~ 461 (464)
+ ++.| |..+.++|.+-|.
T Consensus 219 ~~~pv~~--G~iS~deL~~Ri~ 238 (248)
T PRK13703 219 SVRPLSY--GFITQDDLAKRFL 238 (248)
T ss_pred cEEEEee--ccCCHHHHHHHHH
Confidence 3 4444 4789999876554
No 204
>PRK15000 peroxidase; Provisional
Probab=97.95 E-value=4.9e-05 Score=71.38 Aligned_cols=93 Identities=13% Similarity=0.253 Sum_probs=70.0
Q ss_pred CCCcEEEEEec-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 012415 371 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 422 (464)
Q Consensus 371 ~~k~vlV~Fya-~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---------------------------~~~l~~ 422 (464)
.++.+||+||+ .||+.|....+.|.++.++|...++.++.|.+|.. +..++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia- 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ- 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH-
Confidence 47899999999 59999999999999999999876788888887632 13456
Q ss_pred HcCCCC------CCCEEEEEe-CCCCCeeecC--CCCCCHHHHHHHHHHhC
Q 012415 423 QKLQLG------SFPTILFFP-KHSSKPIKYP--SERRDVDSLMAFVDALR 464 (464)
Q Consensus 423 ~~~~I~------~~PTi~lf~-~g~~~~~~y~--gg~~~~e~L~~fI~~l~ 464 (464)
+.|++. .+|+.+++. +|..+..... .-.++.+++.+.|+.++
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 678886 689999997 4443211111 11379999999998774
No 205
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.95 E-value=2.1e-05 Score=70.85 Aligned_cols=78 Identities=19% Similarity=0.448 Sum_probs=53.2
Q ss_pred cCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHH-HH--HHHHHHhcCCCeEEEEEEcCCCcHHHHHHcC--------
Q 012415 357 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEG-SY--VELADKLAGNGVKVGKFRADGDQKEYAKQKL-------- 425 (464)
Q Consensus 357 L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p-~~--~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~-------- 425 (464)
.+++.|+...+ ++|+++|.++.+||..|+.|.. .| .++++.++. ++.-++||.++. +++. ..|
T Consensus 25 w~~ea~~~Ak~---e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~-Pdid-~~y~~~~~~~~ 98 (163)
T PF03190_consen 25 WGEEALEKAKK---ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREER-PDID-KIYMNAVQAMS 98 (163)
T ss_dssp SSHHHHHHHHH---HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT--HHHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHh---cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccC-ccHH-HHHHHHHHHhc
Confidence 34556666655 7999999999999999999986 34 367777766 688899999998 8887 666
Q ss_pred CCCCCCEEEEEe-CCC
Q 012415 426 QLGSFPTILFFP-KHS 440 (464)
Q Consensus 426 ~I~~~PTi~lf~-~g~ 440 (464)
+..++|+.+|.. +|+
T Consensus 99 ~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGK 114 (163)
T ss_dssp S---SSEEEEE-TTS-
T ss_pred CCCCCCceEEECCCCC
Confidence 688999999985 444
No 206
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=2.5e-05 Score=69.03 Aligned_cols=104 Identities=18% Similarity=0.311 Sum_probs=70.9
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH---HHHHHHHhcCCCCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV---EVQALVRSKGLFSF 189 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~---~~~~~~~~~g~~~~ 189 (464)
++++.|||||||.+. .++.+.+.++..+.++-|.+- +.++.++.++.+|.+.+++.-+.. .-.+++.+.|.|.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d--~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg~P~- 78 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVLD--SWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDGYPR- 78 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCCCcEEEEEEecccc--chhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcCCCc-
Confidence 378999999999887 566778999999999999764 568899999999999988765433 2233455666443
Q ss_pred CCcchhhhhhccccchHHHHhccCcEEEEeeeccCC
Q 012415 190 YEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQS 225 (464)
Q Consensus 190 ~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES 225 (464)
...+ .-.-+-++.+. .+.++.+..|+|||+-
T Consensus 79 --~aIq-~iH~~alE~~A--~r~~~~iaDGTRRDDr 109 (198)
T COG2117 79 --NAIQ-YIHEMALEALA--SREVDRIADGTRRDDR 109 (198)
T ss_pred --hHHH-HHHHHHHHHHH--HHHHHHHcCCCccccc
Confidence 2222 11111122111 1146788899999985
No 207
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.90 E-value=8.9e-05 Score=63.42 Aligned_cols=100 Identities=10% Similarity=0.069 Sum_probs=70.6
Q ss_pred hHHHHHhh-cCCCCcEEEEEecC----CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEE
Q 012415 361 GMENLARL-DHRQEPWLVVLYAP----WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 361 ~f~~~i~~-~~~~k~vlV~Fya~----wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~-~~l~~~~~~I~~~PTi~ 434 (464)
+|++.+.. .++.|.++|+||++ ||.+|+..... .++.+.++. ++.+...|++..+ ..++ ..+++.++|++.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~-~fv~w~~dv~~~eg~~la-~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT-RMLFWACSVAKPEGYRVS-QALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc-CEEEEEEecCChHHHHHH-HHhCCCCCCEEE
Confidence 34444332 34689999999999 89999765421 345555554 7999999998653 5688 899999999999
Q ss_pred EEe--CCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 435 FFP--KHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 435 lf~--~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
++. +++...+....|..+.++|...++.+
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 993 33322333333489999999988764
No 208
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.87 E-value=0.00011 Score=57.90 Aligned_cols=74 Identities=18% Similarity=0.408 Sum_probs=54.6
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHH
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 456 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L 456 (464)
|.+++++|++|..+...+++++..+ ++.+-.+|.... +-. .+|+|.++|++++ +|+ +.+.|...+.++|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~--~~~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el 71 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDF--EEI-EKYGVMSVPALVI--NGK---VVFVGRVPSKEEL 71 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTH--HHH-HHTT-SSSSEEEE--TTE---EEEESS--HHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCH--HHH-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHH
Confidence 3447888999999999999999988 266666777443 444 6999999999954 665 5566646788999
Q ss_pred HHHHH
Q 012415 457 MAFVD 461 (464)
Q Consensus 457 ~~fI~ 461 (464)
.++|+
T Consensus 72 ~~~l~ 76 (76)
T PF13192_consen 72 KELLE 76 (76)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98875
No 209
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.87 E-value=0.00011 Score=71.70 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=70.1
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 012415 371 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 422 (464)
Q Consensus 371 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---------------------------~~~l~~ 422 (464)
.++.+|+.|| +.||+.|....+.|.++.++|.+.++.++.|.+|.. +.+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia- 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS- 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH-
Confidence 3567888888 899999999999999999999876788888877641 14677
Q ss_pred HcCCCC-----CCCEEEEEe-CCCCCeee-cC-CCCCCHHHHHHHHHHhC
Q 012415 423 QKLQLG-----SFPTILFFP-KHSSKPIK-YP-SERRDVDSLMAFVDALR 464 (464)
Q Consensus 423 ~~~~I~-----~~PTi~lf~-~g~~~~~~-y~-gg~~~~e~L~~fI~~l~ 464 (464)
+.|++. ..|+.++++ +|...... +. ...++.+++.+.|+.||
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 788985 589999997 55432222 21 22479999999998875
No 210
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.85 E-value=9.1e-05 Score=69.74 Aligned_cols=90 Identities=23% Similarity=0.378 Sum_probs=64.7
Q ss_pred cEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHHcCCC
Q 012415 374 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQKLQL 427 (464)
Q Consensus 374 ~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------------~~~l~~~~~~I 427 (464)
.+|+.|+++||+.|....+.|.++.++|++.++.++.|++|.. +..++ +.|++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia-~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVA-KLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHH-HHcCC
Confidence 4566888999999999999999999999876789988887642 13567 78887
Q ss_pred C----C----CCEEEEEe-CCCCCeee-cCC-CCCCHHHHHHHHHHhC
Q 012415 428 G----S----FPTILFFP-KHSSKPIK-YPS-ERRDVDSLMAFVDALR 464 (464)
Q Consensus 428 ~----~----~PTi~lf~-~g~~~~~~-y~g-g~~~~e~L~~fI~~l~ 464 (464)
. + .|+++++. +|+.+... |.. ..++.++|.+.|++++
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 5 2 34678885 44432222 211 1368999999998774
No 211
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.00026 Score=59.96 Aligned_cols=100 Identities=12% Similarity=0.229 Sum_probs=79.8
Q ss_pred cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012415 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 438 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~ 438 (464)
....++.+. ....+.++|-|.-.|-|.|..|-..+.++++.+.+ -..++-+|+++- +++. +-|++...||+++|-+
T Consensus 11 ~~~VdqaI~-~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV-~~~~-~~~~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 11 GWEVDQAIL-STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEV-PDFV-KMYELYDPPTVMFFFN 86 (142)
T ss_pred HHHHHHHHh-cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchh-hhhh-hhhcccCCceEEEEEc
Confidence 355666664 34678999999999999999999999999999987 567888999988 9999 9999999999999988
Q ss_pred CCCCeeecCCCC--------CCHHHHHHHHHH
Q 012415 439 HSSKPIKYPSER--------RDVDSLMAFVDA 462 (464)
Q Consensus 439 g~~~~~~y~gg~--------~~~e~L~~fI~~ 462 (464)
++-..+.+..|. .+.+++++.|+.
T Consensus 87 ~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 87 NKHMKIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred CceEEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 874344444332 356777777664
No 212
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.80 E-value=7.4e-05 Score=62.32 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=34.8
Q ss_pred EEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC--cHHHHHHHHH
Q 012415 115 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDE 158 (464)
Q Consensus 115 i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~--fpeT~~~~~~ 158 (464)
++|++|||+||.++ +++.+.+.++.++++|.|.+ .++..+++++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGISPRLEDAKEIAKE 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCCCEEEEEEcCCCcccHHHHHHHHHH
Confidence 57899999999766 88888777899999999987 4555555544
No 213
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.78 E-value=0.0001 Score=68.83 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=78.4
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCC-CCcHHHHHHHHHHHHH---hC--CcEEEEcCChHHHHHHHHhcC
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKH---FG--IRIEYMFPDAVEVQALVRSKG 185 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg-~~fpeT~~~~~~~~~~---~g--l~i~~~~p~~~~~~~~~~~~g 185 (464)
.++++.+|||-||.|. .|+.+.|..+..+|++++ +..+.+.+.++++.+. |+ .++..+.-+...++..+..+.
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~krG~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKRGCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCBT-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred ceEEEEecCCccHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 3578899999999766 888889999999999854 2333444555555544 43 355554445555444444332
Q ss_pred CCCCCCcchhhhhhccccchHHHHhc-----cCcEEEEe----eeccCCcccccCCceeecCCCCcCccCCCCCeEEEEe
Q 012415 186 LFSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITG----QRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256 (464)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-----~~~~~itG----~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~P 256 (464)
.....|-.+|..-++.+-+ |.++++|| +|..| +..++..++... +..-++|
T Consensus 84 -------~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQ---Tl~nL~~i~~~~----------~~pIlRP 143 (197)
T PF02568_consen 84 -------KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQ---TLENLRVIESAS----------DLPILRP 143 (197)
T ss_dssp --------GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS-----HHHHHHHGGG------------S-EE-T
T ss_pred -------CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhh---hHHHHhhhhccc----------CCceeCC
Confidence 2234455566555554442 66788886 44333 334444443221 3457999
Q ss_pred CccCcHHHHHHHHHhcCC
Q 012415 257 VANVKGNDIWNFLRTMDV 274 (464)
Q Consensus 257 I~dWt~~DVw~yi~~~~l 274 (464)
|+.+..+||-+..++-|.
T Consensus 144 Lig~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 144 LIGFDKEEIIEIARKIGT 161 (197)
T ss_dssp TTT--HHHHHHHHHHTT-
T ss_pred cCCCCHHHHHHHHHHhCc
Confidence 999999999999999987
No 214
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00018 Score=70.22 Aligned_cols=112 Identities=18% Similarity=0.301 Sum_probs=87.5
Q ss_pred CCCCeeecCcchHHHHHhhcCCCCcEEEEEecC----CChhHHhhHHHHHHHHHHhcC-----C--CeEEEEEEcCCCcH
Q 012415 350 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAP----WCQFCQAMEGSYVELADKLAG-----N--GVKVGKFRADGDQK 418 (464)
Q Consensus 350 ~~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~----wC~~C~~~~p~~~~la~~~~~-----~--~v~~~~Id~d~~~~ 418 (464)
.+..|+.+++++|..++....++-.++|+|.|. .|.-|+....+|.-++..+.. + ++-|..||.++. +
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-p 116 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-P 116 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-H
Confidence 457899999999999998555666788899874 699999999999999998743 2 688999999999 9
Q ss_pred HHHHHcCCCCCCCEEEEEeCCCC--C-eeecCCC--CCCHHHHHHHHHHh
Q 012415 419 EYAKQKLQLGSFPTILFFPKHSS--K-PIKYPSE--RRDVDSLMAFVDAL 463 (464)
Q Consensus 419 ~l~~~~~~I~~~PTi~lf~~g~~--~-~~~y~gg--~~~~e~L~~fI~~l 463 (464)
++. +.++++++|++++|+..+. + ...+..+ ...+|++.+|++..
T Consensus 117 ~~F-q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 117 QVF-QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred HHH-HHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 999 9999999999999943221 1 1111110 14589999998753
No 215
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.77 E-value=0.00011 Score=64.08 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------cHHHHHHcCCCC
Q 012415 371 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------QKEYAKQKLQLG 428 (464)
Q Consensus 371 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---------------------~~~l~~~~~~I~ 428 (464)
.+++++|+|| +.||++|....|.+.++.++++..++.|+.|..+.. +..+. +.|++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~g~~ 99 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFA-KAYGVL 99 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHH-HHcCCc
Confidence 4789999999 789999999999999999999655788888876532 13455 667776
Q ss_pred CCC---------EEEEEeCCCCCeeecCC
Q 012415 429 SFP---------TILFFPKHSSKPIKYPS 448 (464)
Q Consensus 429 ~~P---------Ti~lf~~g~~~~~~y~g 448 (464)
..| +++++++++.....+.|
T Consensus 100 ~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 100 IEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred cccccccCceeEEEEEECCCCcEEEEEec
Confidence 555 67777654432333333
No 216
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.76 E-value=0.00016 Score=68.65 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=68.8
Q ss_pred CCc-EEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHHc
Q 012415 372 QEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK 424 (464)
Q Consensus 372 ~k~-vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------------~~~l~~~~ 424 (464)
++. +|+.|+++||+.|....+.|.++.++|...++.++.|++|.. +..++ +.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va-~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS-NQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH-HH
Confidence 455 467889999999999999999999999766788888887652 13567 77
Q ss_pred CCCC-------CCCEEEEEeC-CCCCeee-cCC-CCCCHHHHHHHHHHhC
Q 012415 425 LQLG-------SFPTILFFPK-HSSKPIK-YPS-ERRDVDSLMAFVDALR 464 (464)
Q Consensus 425 ~~I~-------~~PTi~lf~~-g~~~~~~-y~g-g~~~~e~L~~fI~~l~ 464 (464)
|++. .+|+++++.. |+.+.+. |.. ..++.++|.+.|++||
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq 156 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 8873 6799999964 5433222 221 1378999999998875
No 217
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=97.76 E-value=0.00022 Score=72.49 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=87.1
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC---------cHHHHHHHHHHHHHhCCcEEEEcCChHHHHH----
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL---------NPETYRFFDEVEKHFGIRIEYMFPDAVEVQA---- 179 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~---------fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~---- 179 (464)
+|+|+.|||-||.|. .|+.+.+.++.-+|+.+... .++-++.++++++++|++++++.-... ++.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~-f~~~Vi~ 80 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREE-FWEEVIE 80 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHH-HHHHTHH
T ss_pred eEEEEccCCHHHHHHHHHHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHH-HHHHHHH
Confidence 589999999998777 88888999988888887755 245688899999999999988733221 222
Q ss_pred -HHHhcCCCCCCCcchhhhhhccccchHHHHhcc---CcEEEEeee----ccCCcccccCCceeecCCC----CcCccCC
Q 012415 180 -LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG---LRAWITGQR----KDQSPGTRSEIPVVQVDPV----FEGLEGG 247 (464)
Q Consensus 180 -~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~---~~~~itG~R----~~ES~~~R~~~~~~~~d~~----~~~~~~~ 247 (464)
++..+.....| +.--.|....|...|.+.... .+.+.||.= .++.. .+..+ ....|+. |.-..-.
T Consensus 81 ~f~~~Y~~G~TP-NPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~-~~~~L-~r~~D~~KDQSYfL~~l~ 157 (356)
T PF03054_consen 81 PFLDEYRKGRTP-NPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKN-GRYRL-LRGADPKKDQSYFLSRLP 157 (356)
T ss_dssp HHHHHHHTT-----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-T-TEEEE-EE-SSTTC--GGGGTT--
T ss_pred HHHHHHhcCCCC-ChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccC-CceEE-EecCCCCCCceEEEEecC
Confidence 22222211122 123468888999988877765 467888862 22111 11111 1111211 1100000
Q ss_pred C-CCeEEEEeCccCcHHHHHHHHHhcCCC
Q 012415 248 V-GSLVKWNPVANVKGNDIWNFLRTMDVP 275 (464)
Q Consensus 248 ~-~~~~k~~PI~dWt~~DVw~yi~~~~lp 275 (464)
. ---.-+.||-+++..+|.+..++.++|
T Consensus 158 ~~~L~~~~FPLG~~~K~eVR~iA~~~gl~ 186 (356)
T PF03054_consen 158 QEQLSRLIFPLGELTKEEVREIAREAGLP 186 (356)
T ss_dssp HHHHCCEE-TCCCS-HHHHHHHHHHCT-T
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHhcCCc
Confidence 0 001247899999999999999999998
No 218
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.76 E-value=6.6e-05 Score=69.43 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=47.2
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---HHHHHHcCCCCCCCEE
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQKLQLGSFPTI 433 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~-------~~---~~l~~~~~~I~~~PTi 433 (464)
.++++||.|||+||++|++ .+.|+++.++|++.++.|+.|.|+. .. .++++++|++ .||.+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~ 94 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMF 94 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeE
Confidence 5799999999999999975 8899999999987789999998853 11 3455125666 36655
No 219
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=97.75 E-value=8.7e-05 Score=69.88 Aligned_cols=171 Identities=16% Similarity=0.235 Sum_probs=104.1
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCCc
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 192 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~ 192 (464)
+.+|-||||-||+.+ +++.+.+..+..+++|-|.-..--+++++++++++|++.+++.-+. ..+ + .|.......
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~--~~~-~--~~saLtd~~ 78 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDL--LGE-I--GGSALTDDS 78 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhH--Hhh-c--CCCcCcCCC
Confidence 477899999999766 7888888889999999997779999999999999999988763221 111 1 111111110
Q ss_pred ----chhhhhh--ccccchHHHHhc-----------cCcEEEEeeeccCCcccccCCceeecC--CCCcCc--cCCCCCe
Q 012415 193 ----GHQECCR--VRKVRPLRRALK-----------GLRAWITGQRKDQSPGTRSEIPVVQVD--PVFEGL--EGGVGSL 251 (464)
Q Consensus 193 ----~~~~Cc~--~~Kv~Pl~r~l~-----------~~~~~itG~R~~ES~~~R~~~~~~~~d--~~~~~~--~~~~~~~ 251 (464)
.....-. -.-..|.|..+- +.+.+++|+-..|.. ..|-.... ..++.. -+...++
T Consensus 79 ~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~s----gYPDcrpefi~a~~~~~~l~~~~~~ 154 (222)
T COG0603 79 IDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFS----GYPDCRPEFIEALNEALNLGTEKGV 154 (222)
T ss_pred ccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccC----CCCCCCHHHHHHHHHHHHhhccCCc
Confidence 0000000 011334443332 456899999888863 22221100 000000 0011233
Q ss_pred E-EEEeCccCcHHHHHHHHHhcCCCcchhhhcCCccc---CccCCCc
Q 012415 252 V-KWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI---GCEPCTR 294 (464)
Q Consensus 252 ~-k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~si---GC~~CT~ 294 (464)
. -..||.+++..++|.--.+.++|+..=+.+ |... +|--|..
T Consensus 155 ~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~SC-Y~g~~~~~CG~C~s 200 (222)
T COG0603 155 RIIHAPLMELTKAEIVKLADELGVPLELTWSC-YNGGEGDHCGECES 200 (222)
T ss_pred cEEeCCeeeccHHHHHHHHHHhCCcchhceEE-eCCCCCCCCCCCHH
Confidence 3 379999999999999999999998776654 3322 5666643
No 220
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.73 E-value=0.00011 Score=64.43 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=39.6
Q ss_pred CCCcEEEEEecCCChh-HHhhHHHHHHHHHHhcCC---CeEEEEEEcCC
Q 012415 371 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAGN---GVKVGKFRADG 415 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~-C~~~~p~~~~la~~~~~~---~v~~~~Id~d~ 415 (464)
.++++||.||++||++ |....+.+.++.+++++. ++.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4789999999999998 999999999999999763 49999888764
No 221
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.73 E-value=0.00034 Score=59.33 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=77.8
Q ss_pred eeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHH---hcCCCeEEEEEEcCCCcHHHHHHcCCCCC-
Q 012415 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADK---LAGNGVKVGKFRADGDQKEYAKQKLQLGS- 429 (464)
Q Consensus 354 v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~---~~~~~v~~~~Id~d~~~~~l~~~~~~I~~- 429 (464)
|.+++.++++.+.. .+.+..+.|+ .-..-......+.++|++ +++ ++.|+.+|.+.. .... +.|++..
T Consensus 1 ~~e~t~e~~~~~~~---~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~-~~~~-~~fgl~~~ 72 (111)
T cd03072 1 VREITFENAEELTE---EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKG-AINFLTADGDKF-RHPL-LHLGKTPA 72 (111)
T ss_pred CcccccccHHHHhc---CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHh-hhHH-HHcCCCHh
Confidence 45788889888775 6666666777 223347889999999999 888 799999999998 5677 8999986
Q ss_pred -CCEEEEEeCCCCCeee-cCCCCCCHHHHHHHHHHh
Q 012415 430 -FPTILFFPKHSSKPIK-YPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 430 -~PTi~lf~~g~~~~~~-y~gg~~~~e~L~~fI~~l 463 (464)
+|.+.+........+. +.+ ..+.++|.+|++++
T Consensus 73 ~~P~i~i~~~~~~~Ky~~~~~-~~t~~~i~~Fv~~~ 107 (111)
T cd03072 73 DLPVIAIDSFRHMYLFPDFED-VYVPGKLKQFVLDL 107 (111)
T ss_pred HCCEEEEEcchhcCcCCCCcc-ccCHHHHHHHHHHH
Confidence 9999999764411222 334 78999999999875
No 222
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=97.70 E-value=0.00014 Score=70.36 Aligned_cols=163 Identities=18% Similarity=0.240 Sum_probs=92.1
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHH-cC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 012415 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 177 (464)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~-~~-~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~ 177 (464)
..|+..+++.+ ..++|++|||-||+++ .|+.+ .+ .++..++++++...+++.+-++.+++.+|+++.++.-. ..+
T Consensus 7 ~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~-~~~ 85 (242)
T PF02540_consen 7 DFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDID-PIF 85 (242)
T ss_dssp HHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESH-HHH
T ss_pred HHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccchH-HHH
Confidence 44555566655 5699999999999877 66666 43 46888999999999999999999999999998776322 112
Q ss_pred HHHHHhcCCCCCCCcchhhhhhccccchHHHHhc-cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEe
Q 012415 178 QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256 (464)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~P 256 (464)
..+...-.... ......+-.-|....+.-++. .....+.|. +++.... +..-..| +. +-.-+.|
T Consensus 86 ~~~~~~~~~~~--~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVlgT------~N~sE~~-~Gy~T~~----GD--~~~d~~P 150 (242)
T PF02540_consen 86 DAFLKSLEPAD--DDLARGNIQARIRMTTLYALANKYNYLVLGT------GNKSELL-LGYFTKY----GD--GAGDIAP 150 (242)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTEEEBE--------CHHHHH-HTCSHTT----TT--TSSSBET
T ss_pred HHHhhhhccch--hhhhhhhHHHHHHHHHHHHHhcccceEEecC------CcHHHhh-cCccccc----Cc--cccccee
Confidence 22211000000 000001111111111111121 234555554 1232211 1111111 10 1223799
Q ss_pred CccCcHHHHHHHHHhcCCCcchhh
Q 012415 257 VANVKGNDIWNFLRTMDVPINSLH 280 (464)
Q Consensus 257 I~dWt~~DVw~yi~~~~lp~npLy 280 (464)
|.+-...+|+...+..++|-.-+.
T Consensus 151 i~~L~K~eV~~la~~l~ip~~ii~ 174 (242)
T PF02540_consen 151 IADLYKTEVRELARYLGIPEEIIE 174 (242)
T ss_dssp TTTS-HHHHHHHHHHTTCGHHHHC
T ss_pred eCCcCHHHHHHHHHHHhhHHHHhc
Confidence 999999999999999998866554
No 223
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.70 E-value=6.9e-05 Score=68.29 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=72.0
Q ss_pred CeeecC-cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 353 NLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 353 ~v~~L~-~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
...++. ..+|-+... ....|++.||-|.-..|+-|-..++.||+.+-+ ..|++||+... |=++ .+++|.-+|
T Consensus 67 ~y~ev~~Ekdf~~~~~---kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae~~-PFlv-~kL~IkVLP 139 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVK---KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAEKA-PFLV-TKLNIKVLP 139 (211)
T ss_pred eEEEeccHHHHHHHhh---cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecccC-ceee-eeeeeeEee
Confidence 445554 566666665 678899999999999999999999999999986 89999999999 8899 999999999
Q ss_pred EEEEEeCCCC
Q 012415 432 TILFFPKHSS 441 (464)
Q Consensus 432 Ti~lf~~g~~ 441 (464)
++.+|++|+.
T Consensus 140 ~v~l~k~g~~ 149 (211)
T KOG1672|consen 140 TVALFKNGKT 149 (211)
T ss_pred eEEEEEcCEE
Confidence 9999999985
No 224
>PRK13189 peroxiredoxin; Provisional
Probab=97.69 E-value=0.00021 Score=68.28 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=66.7
Q ss_pred CCCc-EEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHH
Q 012415 371 RQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQ 423 (464)
Q Consensus 371 ~~k~-vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------------~~~l~~~ 423 (464)
.++. +|+.|+++||+.|....+.|.++.++|+..++.++.|.+|.. +.+++ +
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia-~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA-K 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH-H
Confidence 3564 455777999999999999999999999876788888876632 13567 7
Q ss_pred cCCCC-------CCCEEEEEe-CCCCCeeec-C-CCCCCHHHHHHHHHHhC
Q 012415 424 KLQLG-------SFPTILFFP-KHSSKPIKY-P-SERRDVDSLMAFVDALR 464 (464)
Q Consensus 424 ~~~I~-------~~PTi~lf~-~g~~~~~~y-~-gg~~~~e~L~~fI~~l~ 464 (464)
.|++. .+|+++++. +|..+.+.+ . ...++.+++...|+.++
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 78865 468899996 454322222 1 11378999999998764
No 225
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.69 E-value=0.00014 Score=55.51 Aligned_cols=67 Identities=24% Similarity=0.389 Sum_probs=46.8
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcC----CCCCCCEEEEEeCCCCCeeecCCCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL----QLGSFPTILFFPKHSSKPIKYPSERR 451 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~----~I~~~PTi~lf~~g~~~~~~y~gg~~ 451 (464)
++.|+++||++|..+...+.+. ++.+..+|++.+ .... +.+ ++.++|++++ +|+ ...| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------~i~~~~~~i~~~-~~~~-~~~~~~~~~~~vP~i~~--~~~----~i~g--~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------GIPFEEVDVDED-PEAL-EELKKLNGYRSVPVVVI--GDE----HLSG--F 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------CCCeEEEeCCCC-HHHH-HHHHHHcCCcccCEEEE--CCE----EEec--C
Confidence 5789999999999998887762 477888888876 4443 333 6789999975 332 2223 4
Q ss_pred CHHHHHHH
Q 012415 452 DVDSLMAF 459 (464)
Q Consensus 452 ~~e~L~~f 459 (464)
+.+.|.++
T Consensus 65 ~~~~l~~~ 72 (73)
T cd02976 65 RPDKLRAL 72 (73)
T ss_pred CHHHHHhh
Confidence 66667665
No 226
>PTZ00323 NAD+ synthase; Provisional
Probab=97.67 E-value=0.00054 Score=67.97 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=87.3
Q ss_pred HHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc-CC-C---eEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCC--
Q 012415 104 MDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GR-P---FRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPD-- 173 (464)
Q Consensus 104 l~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~~-~~-~---i~vv~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~-- 173 (464)
|+..++..+ ..++|++|||-||+++ .|+.+. +. . ..++.+..... -+.+.+-+.++++.+|++++++.-.
T Consensus 37 L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi~~l 116 (294)
T PTZ00323 37 LNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQTEI 116 (294)
T ss_pred HHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEECcHH
Confidence 333444433 4699999999999877 566653 32 2 44555555544 6799999999999999988776322
Q ss_pred hHHHHHHHHhc-CCCC--CCCcchhhhhhccccchHHHHh--ccCcEEEEee-eccCCcccccCCceeecCCCCcCccCC
Q 012415 174 AVEVQALVRSK-GLFS--FYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGG 247 (464)
Q Consensus 174 ~~~~~~~~~~~-g~~~--~~~~~~~~Cc~~~Kv~Pl~r~l--~~~~~~itG~-R~~ES~~~R~~~~~~~~d~~~~~~~~~ 247 (464)
...+...+... +... +.....+...+..-..-+.... .+...++.|+ .++|-. . -......-|
T Consensus 117 ~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~-~-~Gy~t~~GD--------- 185 (294)
T PTZ00323 117 HTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDG-Y-LGYFCKAGD--------- 185 (294)
T ss_pred HHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhh-H-hchHhhcCC---------
Confidence 22222222111 1000 0000001001000000011112 1445788888 666631 0 111111112
Q ss_pred CCCeEEEEeCccCcHHHHHHHHHhcCCC
Q 012415 248 VGSLVKWNPVANVKGNDIWNFLRTMDVP 275 (464)
Q Consensus 248 ~~~~~k~~PI~dWt~~DVw~yi~~~~lp 275 (464)
+..-+.||++++..||+...+..++|
T Consensus 186 --g~~d~~pia~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 186 --GVVDVQLISDLHKSEVFLVARELGVP 211 (294)
T ss_pred --CCcCchhhcCCcHHHHHHHHHHcCCC
Confidence 35679999999999999999988775
No 227
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.67 E-value=0.00013 Score=58.65 Aligned_cols=75 Identities=12% Similarity=0.302 Sum_probs=54.1
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCC--CCCCCEEEEEeCCCCCeeecCCC
Q 012415 375 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQ--LGSFPTILFFPKHSSKPIKYPSE 449 (464)
Q Consensus 375 vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~--I~~~PTi~lf~~g~~~~~~y~gg 449 (464)
-++.|+.+||++|+.....|+++..++. ++.+..+|++.+. .++. +..+ +.++|+++ .+|+ . .|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~~~~~~el~-~~~~~~~~~vP~if--i~g~--~---ig- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAEGISKADLE-KTVGKPVETVPQIF--VDQK--H---IG- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCChHHHHHHH-HHHCCCCCcCCEEE--ECCE--E---Ec-
Confidence 3788999999999999999999998764 5889999998751 2444 3343 57899975 4665 2 23
Q ss_pred CCCHHHHHHHHHH
Q 012415 450 RRDVDSLMAFVDA 462 (464)
Q Consensus 450 ~~~~e~L~~fI~~ 462 (464)
..++|.++++.
T Consensus 71 --g~~~~~~~~~~ 81 (85)
T PRK11200 71 --GCTDFEAYVKE 81 (85)
T ss_pred --CHHHHHHHHHH
Confidence 24566666653
No 228
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.62 E-value=0.00034 Score=66.51 Aligned_cols=92 Identities=13% Similarity=0.244 Sum_probs=66.5
Q ss_pred CCcEEE-EEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------------HHHHHHc
Q 012415 372 QEPWLV-VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------------KEYAKQK 424 (464)
Q Consensus 372 ~k~vlV-~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~--------------------------~~l~~~~ 424 (464)
++.++| .|+++||+.|....+.|.+++++|...++.++.|++|... .+++ +.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia-~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA-KR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH-HH
Confidence 555554 7789999999999999999999997667888888876431 3456 67
Q ss_pred CCCC-------CCCEEEEEeC-CCCCee-ecC-CCCCCHHHHHHHHHHhC
Q 012415 425 LQLG-------SFPTILFFPK-HSSKPI-KYP-SERRDVDSLMAFVDALR 464 (464)
Q Consensus 425 ~~I~-------~~PTi~lf~~-g~~~~~-~y~-gg~~~~e~L~~fI~~l~ 464 (464)
|++. ..|+.+++.. |..+.+ .+. .-.++.+++.+.|++++
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 7763 3688888864 443222 122 11379999999998874
No 229
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.60 E-value=0.0013 Score=57.32 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=76.7
Q ss_pred CeeecCcchH-HHHHhhcCCCCcEEEEEecC--CChh-H-HhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCC
Q 012415 353 NLVTLNRTGM-ENLARLDHRQEPWLVVLYAP--WCQF-C-QAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL 427 (464)
Q Consensus 353 ~v~~L~~~~f-~~~i~~~~~~k~vlV~Fya~--wC~~-C-~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I 427 (464)
.|++|+++++ ++.-. .+...+|-|.-. -|.. + ..+...|.++|++|+++.+.|+.+|.+.. ..+. +.|+|
T Consensus 3 ~~~~l~~~~~~~~~C~---~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~-~~~~-~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETCE---EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ-LDLE-EALNI 77 (130)
T ss_pred ceEEecCHHHHHhhcc---CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc-HHHH-HHcCC
Confidence 5788887666 33332 355666666432 1222 3 56788999999999994499999999999 7788 89999
Q ss_pred C--CCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 428 G--SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 428 ~--~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
. .+|+++++...+.+...+.| ..+.++|.+|++.+
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~-~~t~e~i~~Fv~~~ 114 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKG-SFSEDGINEFLREL 114 (130)
T ss_pred CccCCCEEEEEecccCccccccC-ccCHHHHHHHHHHH
Confidence 5 59999999765422322555 79999999999875
No 230
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.56 E-value=0.00081 Score=54.96 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=68.6
Q ss_pred chHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCC
Q 012415 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 439 (464)
Q Consensus 360 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g 439 (464)
+.++.++. ..+.++|-|+.++|+ .....|.++|+.+.+ .+.|+.++ + .+++ +++.+. -|++++|++.
T Consensus 8 ~~l~~~~~---~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~-~~~~-~~~~~~-~~~i~l~~~~ 74 (97)
T cd02981 8 EELEKFLD---KDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---D-KEVA-KKLKVK-PGSVVLFKPF 74 (97)
T ss_pred HHHHHHhc---cCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---h-HHHH-HHcCCC-CCceEEeCCc
Confidence 34555554 788999999999987 567788999999976 58887766 3 6778 677775 5999999775
Q ss_pred CCCeeecCCCCCCHHHHHHHHHH
Q 012415 440 SSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 440 ~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
......|.| ..+.++|.+||..
T Consensus 75 ~~~~~~y~g-~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EEEPVEYDG-EFTEESLVEFIKD 96 (97)
T ss_pred ccCCccCCC-CCCHHHHHHHHHh
Confidence 444678988 5789999999974
No 231
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.54 E-value=0.00032 Score=66.80 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=76.4
Q ss_pred EEEechhHHHHHH-HHHHHcCCCeE-EEEEeCCC------CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCC
Q 012415 116 AIAFSGAEDVALI-EYAHLTGRPFR-VFSLDTGR------LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLF 187 (464)
Q Consensus 116 ~vafSGGKDS~ll-~L~~~~~~~i~-vv~~DTg~------~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~ 187 (464)
+++|||||||+++ +++.+.+.++. ++++++.. +-. -.+.++++++.+|++++++.-........
T Consensus 1 ~vl~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~-~~~~~~~~A~~lgip~~~i~~~~~~~~~~------- 72 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEEGHEVRCLITVVPENEESYMFHTP-NIELTRLQAEALGIPLVKIETSGEKEKEV------- 72 (218)
T ss_pred CeeecCcHHHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCC-CHHHHHHHHHHhCCCEEEEECCCCChHHH-------
Confidence 3689999999876 77777776663 55665431 222 34778999999999987664221000000
Q ss_pred CCCCcchhhhhhccccchHHHHhc-cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCccCcHHHHH
Q 012415 188 SFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIW 266 (464)
Q Consensus 188 ~~~~~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw 266 (464)
.. + ..-++++.+ +.+.+++|.-.++-. |.+...+.- ..++.-+.||+.++..++.
T Consensus 73 ------~~----l--~~~l~~~~~~g~~~vv~G~i~sd~~--~~~~e~v~~----------~~gl~~~~PLw~~~~~el~ 128 (218)
T TIGR03679 73 ------ED----L--KGALKELKREGVEGIVTGAIASRYQ--KSRIERICE----------ELGLKVFAPLWGRDQEEYL 128 (218)
T ss_pred ------HH----H--HHHHHHHHHcCCCEEEECCcccHhH--HHHHHHHHH----------hCCCeEEeehhcCCHHHHH
Confidence 00 0 011122222 677899998877642 333221111 1357789999999999998
Q ss_pred HHHHhcCC
Q 012415 267 NFLRTMDV 274 (464)
Q Consensus 267 ~yi~~~~l 274 (464)
.=+...|+
T Consensus 129 ~~~~~~G~ 136 (218)
T TIGR03679 129 RELVERGF 136 (218)
T ss_pred HHHHHCCC
Confidence 86665443
No 232
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=8.3e-05 Score=69.44 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=62.8
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSS 441 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~ 441 (464)
..+..++.||++||..|+.|...++.+++..+ ++.|++++.+.. ++++ ..+.+...|++.++..|+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~-~eis-~~~~v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEF-PEIS-NLIAVEAVPYFVFFFLGEK 82 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhh-hHHH-HHHHHhcCceeeeeecchh
Confidence 78899999999999999999999999999994 699999999999 9999 9999999999999988874
No 233
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.50 E-value=0.00045 Score=66.41 Aligned_cols=82 Identities=13% Similarity=0.321 Sum_probs=60.7
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-------------------------------------
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA------------------------------------- 413 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~------------------------------------- 413 (464)
.++.+++.|.-+.||+|+++.+.+.++.+. +|.+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 467889999999999999999998876431 244333211
Q ss_pred -------CCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 012415 414 -------DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 464 (464)
Q Consensus 414 -------d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l~ 464 (464)
+.+ .+++ ++++|+++||++ |.+|+ .+ .| ..+.++|.++|++.+
T Consensus 182 ~~c~~~v~~~-~~la-~~lgi~gTPtiv-~~~G~--~~--~G-~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 182 ASCDVDIADH-YALG-VQFGVQGTPAIV-LSNGT--LV--PG-YQGPKEMKAFLDEHQ 231 (232)
T ss_pred ccccchHHHh-HHHH-HHcCCccccEEE-EcCCe--Ee--eC-CCCHHHHHHHHHHcc
Confidence 112 5678 899999999998 77776 33 45 789999999998753
No 234
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.50 E-value=0.00059 Score=64.00 Aligned_cols=93 Identities=11% Similarity=0.246 Sum_probs=68.1
Q ss_pred CCCcEEEEEec-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 012415 371 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 422 (464)
Q Consensus 371 ~~k~vlV~Fya-~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---------------------------~~~l~~ 422 (464)
.++.+||+||+ .||+.|....+.|.++.++|...++.++.|++|.. +.+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia- 113 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA- 113 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH-
Confidence 46789999995 88999999999999999999877789998887643 13567
Q ss_pred HcCCCC------CCCEEEEEeCCCC-CeeecC--CCCCCHHHHHHHHHHhC
Q 012415 423 QKLQLG------SFPTILFFPKHSS-KPIKYP--SERRDVDSLMAFVDALR 464 (464)
Q Consensus 423 ~~~~I~------~~PTi~lf~~g~~-~~~~y~--gg~~~~e~L~~fI~~l~ 464 (464)
+.|++. .+|+.++++..+. +..... ...++.+++.+.|+.++
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 788875 4689999975543 211111 12378888888887764
No 235
>PRK00876 nadE NAD synthetase; Reviewed
Probab=97.45 E-value=0.0039 Score=62.76 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=54.6
Q ss_pred HHHHHHHHHH-cC-CcEEEEechhHHHHHH-HHHHHc-C-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 012415 101 LEIMDRALEK-FG-NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 171 (464)
Q Consensus 101 ~eil~~a~~~-~~-~~i~vafSGGKDS~ll-~L~~~~-~-~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~ 171 (464)
.+.|+..++. .+ .+++|++|||.||+++ .|+.+. + .++..++++++..-++..++++.+++++|++.+++.
T Consensus 20 ~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~ 95 (326)
T PRK00876 20 RAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGREVAEHLGVEYVVED 95 (326)
T ss_pred HHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEE
Confidence 4456666666 34 4699999999999776 677664 4 357777888876678899999999999999987654
No 236
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.45 E-value=0.00072 Score=72.73 Aligned_cols=96 Identities=10% Similarity=0.109 Sum_probs=73.0
Q ss_pred eecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012415 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 355 ~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~ 434 (464)
..|+++..+.+.+ . .+..-+-.|+++.||+|......+++++...+ +|.+-.||...+ ++++ ++|+|.++|+++
T Consensus 101 ~~l~~~~~~~i~~-~-~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~-~~~~-~~~~v~~VP~~~ 174 (517)
T PRK15317 101 PKLDQEVIEQIKA-L-DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALF-QDEV-EARNIMAVPTVF 174 (517)
T ss_pred CCCCHHHHHHHHh-c-CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhC-HhHH-HhcCCcccCEEE
Confidence 3455555555443 1 23445888999999999999999999988655 599999999999 9999 999999999996
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 435 FFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 435 lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
+ +++ ..+.| ..+.++|.+.+.+
T Consensus 175 i--~~~---~~~~g-~~~~~~~~~~~~~ 196 (517)
T PRK15317 175 L--NGE---EFGQG-RMTLEEILAKLDT 196 (517)
T ss_pred E--CCc---EEEec-CCCHHHHHHHHhc
Confidence 5 554 33445 6778888777653
No 237
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.43 E-value=0.0014 Score=55.56 Aligned_cols=99 Identities=11% Similarity=0.152 Sum_probs=72.0
Q ss_pred eecCcchHHHHHhhcCCCCcEEEEEe----cCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012415 355 VTLNRTGMENLARLDHRQEPWLVVLY----APWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGS 429 (464)
Q Consensus 355 ~~L~~~~f~~~i~~~~~~k~vlV~Fy----a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~Id~d~~~~~l~~~~~~I~~ 429 (464)
.+++.++...... .+.++.|| +..-..-......+.++|+.++ + ++.|+.+|.+.. .... +.|++..
T Consensus 2 ~~~~~en~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~-~~~l-~~fgl~~ 73 (111)
T cd03073 2 GHRTKDNRAQFTK-----KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDF-SHEL-EEFGLDF 73 (111)
T ss_pred CeeccchHHHhcc-----CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHH-HHHH-HHcCCCc
Confidence 3567777777642 34444444 2233445778999999999999 6 699999999988 6677 8999974
Q ss_pred ----CCEEEEEeCCCCCeeecCCCCC-CHHHHHHHHHHh
Q 012415 430 ----FPTILFFPKHSSKPIKYPSERR-DVDSLMAFVDAL 463 (464)
Q Consensus 430 ----~PTi~lf~~g~~~~~~y~gg~~-~~e~L~~fI~~l 463 (464)
+|++.++..... -+...+ .. +.++|.+|++++
T Consensus 74 ~~~~~P~~~i~~~~~~-KY~~~~-~~~t~e~i~~F~~~f 110 (111)
T cd03073 74 SGGEKPVVAIRTAKGK-KYVMEE-EFSDVDALEEFLEDF 110 (111)
T ss_pred ccCCCCEEEEEeCCCC-ccCCCc-ccCCHHHHHHHHHHh
Confidence 999999874332 222444 57 999999999876
No 238
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.43 E-value=0.00067 Score=73.64 Aligned_cols=95 Identities=12% Similarity=0.223 Sum_probs=73.9
Q ss_pred CeeecCcchHHHHHhhcCCCCcE-EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 353 NLVTLNRTGMENLARLDHRQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~v-lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
+-..|+.+..+.+.. =++++ +-.|++++|++|......+++++...+ +|..-.||.... ++++ ++|+|.++|
T Consensus 459 ~~~~l~~~~~~~i~~---~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~-~~~~-~~~~v~~vP 531 (555)
T TIGR03143 459 PGQPLGEELLEKIKK---ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHF-PDLK-DEYGIMSVP 531 (555)
T ss_pred CCCCCCHHHHHHHHh---cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECccc-HHHH-HhCCceecC
Confidence 444566555555543 24565 445689999999999999999998876 499999999999 9999 999999999
Q ss_pred EEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 432 TILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 432 Ti~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
++++ +|+ ..+.| ..+.++|.++|
T Consensus 532 ~~~i--~~~---~~~~G-~~~~~~~~~~~ 554 (555)
T TIGR03143 532 AIVV--DDQ---QVYFG-KKTIEEMLELI 554 (555)
T ss_pred EEEE--CCE---EEEee-CCCHHHHHHhh
Confidence 9976 555 33556 56999998876
No 239
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.40 E-value=0.00074 Score=65.92 Aligned_cols=117 Identities=16% Similarity=0.244 Sum_probs=70.5
Q ss_pred HHHHHHHH---cCCcEEEEechhHHHHHH-HHHHHcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 012415 103 IMDRALEK---FGNDIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 177 (464)
Q Consensus 103 il~~a~~~---~~~~i~vafSGGKDS~ll-~L~~~~~~-~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~ 177 (464)
.+..+++. -+.+|.+.+|||.||.++ .++.+... ++..++++.+....+-..+++.+++++|++.+.+......+
T Consensus 3 ~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~~~~ 82 (269)
T cd01991 3 LLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFTPADL 82 (269)
T ss_pred HHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcCHHHH
Confidence 34444443 335699999999999766 66666543 37778887775433348899999999999988876555444
Q ss_pred HHHHH----hcCCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCc
Q 012415 178 QALVR----SKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 226 (464)
Q Consensus 178 ~~~~~----~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~ 226 (464)
..... ....+. ..|..... .-+.+... +.++.++|.=.||-.
T Consensus 83 ~~~~~~~~~~~~~p~------~~~~~~~~-~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 83 LAALPDVIWELDEPF------ADSSAIPL-YLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred HHHHHHHHHHhCCCC------CCcHHHHH-HHHHHHHHHhCCEEEEecCCccccc
Confidence 33322 111111 11211111 12222222 347999999888853
No 240
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0034 Score=63.31 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=101.9
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCC-------CcHHHHHHHHHHHHHhCCcEEEEcCChHH----HHHH
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGR-------LNPETYRFFDEVEKHFGIRIEYMFPDAVE----VQAL 180 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg~-------~fpeT~~~~~~~~~~~gl~i~~~~p~~~~----~~~~ 180 (464)
.+|+|++|||-||.|. .|+.+.+.++.-+|+.... ...+=++.++++++.+|++++++.=...- +..+
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f 83 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYF 83 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHH
Confidence 4689999999998665 8888889998888876655 34566778999999999999887322211 2223
Q ss_pred HHhcCCCCCCCcchhhhhhccccchHHHHhccC--cEEEEeeeccCCcc-cccCCceeecC----CCCcCccCCCCC-eE
Q 012415 181 VRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPG-TRSEIPVVQVD----PVFEGLEGGVGS-LV 252 (464)
Q Consensus 181 ~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~R~~ES~~-~R~~~~~~~~d----~~~~~~~~~~~~-~~ 252 (464)
+.+++....|.. --.|....|...+...+.++ +.++||.=.-..+. .+..+.. ..| ..|.-....... -.
T Consensus 84 ~~~Y~~G~TPNP-ci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r-~~D~~KDQsYfL~~~~~~ql~~ 161 (356)
T COG0482 84 LAEYKAGKTPNP-CILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLR-GVDLNKDQSYFLYALSQEQLER 161 (356)
T ss_pred HHHHhCCCCCCc-chhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCccccccc-CCCcccchhheecccCHHHHhh
Confidence 444443322222 23577999999988887644 57888863322210 1111100 011 111000000000 11
Q ss_pred EEEeCccCcHHHHHHHHHhcCCCcchhh
Q 012415 253 KWNPVANVKGNDIWNFLRTMDVPINSLH 280 (464)
Q Consensus 253 k~~PI~dWt~~DVw~yi~~~~lp~npLy 280 (464)
-+.||-+++..+|-..-.+.+||...-=
T Consensus 162 ~lFPlG~l~K~evR~iA~~~gL~~a~Kk 189 (356)
T COG0482 162 LLFPLGDLEKLEVRPIAAEKGLPTAKKK 189 (356)
T ss_pred ccccCCCCCHHHHHHHHHHcCCCccCcc
Confidence 3679999999999999999999874433
No 241
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.36 E-value=0.00071 Score=50.37 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=40.4
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEE
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~I~~~PTi~l 435 (464)
++.|..+||++|+..+..|++. ++.+-.+|++.+. .++. +..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-------~i~y~~~dv~~~~~~~~~l~-~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-------GIPYEEVDVDEDEEAREELK-ELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-------TBEEEEEEGGGSHHHHHHHH-HHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-------CCeeeEcccccchhHHHHHH-HHcCCCccCEEEE
Confidence 5789999999999999888443 5889999998872 2333 3348999999985
No 242
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.32 E-value=0.0039 Score=53.66 Aligned_cols=100 Identities=13% Similarity=0.257 Sum_probs=75.3
Q ss_pred cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC-EEEEEe
Q 012415 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP-TILFFP 437 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~P-Ti~lf~ 437 (464)
....++.+. ...++.++|-|..+|-+.|..|-..+.+++++.++ -..++.+|+++- +++. +.|++. -| |++||-
T Consensus 8 ~~~VDqAI~-~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~V-pdfn-~~yel~-dP~tvmFF~ 82 (133)
T PF02966_consen 8 GWHVDQAIL-SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEV-PDFN-QMYELY-DPCTVMFFF 82 (133)
T ss_dssp HHHHHHHHH-H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTT-HCCH-HHTTS--SSEEEEEEE
T ss_pred cchHHHHHh-ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccc-hhhh-cccccC-CCeEEEEEe
Confidence 455677665 34689999999999999999999999999999987 678999999999 9998 899999 77 566676
Q ss_pred CCCCCeeecCCC--------CCCHHHHHHHHHHh
Q 012415 438 KHSSKPIKYPSE--------RRDVDSLMAFVDAL 463 (464)
Q Consensus 438 ~g~~~~~~y~gg--------~~~~e~L~~fI~~l 463 (464)
+++-..+.+..| ..+.++++..|+.+
T Consensus 83 rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 83 RNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp TTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred cCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 766434444332 23578888777653
No 243
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.25 E-value=0.00066 Score=54.70 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=51.7
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCC--CCCCCEEEEEeCCCCCeeecCCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQ--LGSFPTILFFPKHSSKPIKYPSER 450 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~--I~~~PTi~lf~~g~~~~~~y~gg~ 450 (464)
++.|..+|||+|.+.+..|.++...+. ++.+..+|++.+. .++. +..+ +.++|+++ -+|+ . .||
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~~~~~~~~~l~-~~~g~~~~tVP~if--i~g~--~---igG- 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIHAEGISKADLE-KTVGKPVETVPQIF--VDEK--H---VGG- 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECCCCHHHHHHHH-HHhCCCCCCcCeEE--ECCE--E---ecC-
Confidence 678999999999999999998876554 3778888887541 2455 5555 37899994 3554 2 243
Q ss_pred CCHHHHHHHHHH
Q 012415 451 RDVDSLMAFVDA 462 (464)
Q Consensus 451 ~~~e~L~~fI~~ 462 (464)
.++|.+++++
T Consensus 71 --~~dl~~~~~~ 80 (86)
T TIGR02183 71 --CTDFEQLVKE 80 (86)
T ss_pred --HHHHHHHHHh
Confidence 4667777653
No 244
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.19 E-value=0.00096 Score=52.62 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=41.9
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----HHHHHHcCCCCCCCEEEEEeCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~----~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
++.|+++|||+|+.+...+.++.. .+.+..+|.+.+. ..+. +..++.++|++ |.+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~-~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQ-ELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHH-HHhCCCCCCeE--EECCE
Confidence 578999999999999999998754 2566777776552 1344 55688899997 44565
No 245
>PRK05370 argininosuccinate synthase; Validated
Probab=97.14 E-value=0.0041 Score=64.38 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=85.8
Q ss_pred CCcEEEEechhHHH-HHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHH---HHhcCC
Q 012415 112 GNDIAIAFSGAEDV-ALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQAL---VRSKGL 186 (464)
Q Consensus 112 ~~~i~vafSGGKDS-~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~~~---~~~~g~ 186 (464)
|.+|+++||||=|+ +++.++++.+.++..+++|+|-.-.+=++.+++-+..+|. +++++--....+..+ +..+.+
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI~anA~ 90 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAIQCGAF 90 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHHHcCCc
Confidence 46799999999995 5556666657789999999995212446778888889998 566653322222222 222211
Q ss_pred C-----CCCCcch--hhhhhccccchHHHHhc-cCcEEEEee---eccCCcccccCCceeecCCCCcCccCCCCCeEEEE
Q 012415 187 F-----SFYEDGH--QECCRVRKVRPLRRALK-GLRAWITGQ---RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN 255 (464)
Q Consensus 187 ~-----~~~~~~~--~~Cc~~~Kv~Pl~r~l~-~~~~~itG~---R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~ 255 (464)
+ ..|.-.. .+-+-..++... +.+ +.+++.=|- =.|| -|..+.+...+| .+--+.
T Consensus 91 Y~~~~e~~Y~l~t~LaRplia~~lv~~--A~~~ga~aIAHG~TGKGNDQ---vRFE~~~~aL~P----------~l~Via 155 (447)
T PRK05370 91 HISTGGVTYFNTTPLGRAVTGTMLVAA--MKEDGVNIWGDGSTYKGNDI---ERFYRYGLLTNP----------ELKIYK 155 (447)
T ss_pred cccccCccccCCCcchHHHHHHHHHHH--HHHhCCcEEEEcCCCCCCch---HHHHHHHHHhCC----------CCeEec
Confidence 1 0011000 000111111111 111 344555443 2333 344444433443 455789
Q ss_pred eCccC-------cHHHHHHHHHhcCCCcc
Q 012415 256 PVANV-------KGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 256 PI~dW-------t~~DVw~yi~~~~lp~n 277 (464)
|.-+| +.+|--+|+++||||+.
T Consensus 156 PwRd~~~~~~f~sR~e~i~Ya~~hGIpv~ 184 (447)
T PRK05370 156 PWLDQDFIDELGGRAEMSEFLIAHGFDYK 184 (447)
T ss_pred chhhhhcccccCCHHHHHHHHHHcCCCCC
Confidence 99998 78999999999999985
No 246
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.07 E-value=0.0014 Score=61.16 Aligned_cols=77 Identities=22% Similarity=0.378 Sum_probs=54.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEE---------------------------------------
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF--------------------------------------- 411 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~I--------------------------------------- 411 (464)
..+..++.|+.+.|++|+++.+.+.+ ..+ ++.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NAD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 36789999999999999999998876 111 2322222
Q ss_pred ------EcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 412 ------RADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 412 ------d~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
+++.+ ..++ ++++|.++||++ |.+|. . ..| ..+.++|.++|
T Consensus 151 ~~~~~~~i~~~-~~l~-~~~gi~gtPtii-~~~G~--~--~~G-~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAAN-LALG-RQLGVNGTPTIV-LADGR--V--VPG-APPAAQLEALL 197 (197)
T ss_pred ccccCchHHHH-HHHH-HHcCCCcccEEE-ECCCe--E--ecC-CCCHHHHHhhC
Confidence 11222 4678 899999999997 77776 2 345 67788887764
No 247
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.04 E-value=0.0037 Score=67.26 Aligned_cols=95 Identities=13% Similarity=0.165 Sum_probs=72.4
Q ss_pred eecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012415 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 355 ~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~ 434 (464)
..|+++..+.+..+ .+..-+-.|+++.||+|......+++++...+ +|..-.+|...+ ++++ ++|+|.++|+++
T Consensus 102 ~~l~~~~~~~~~~~--~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~-~~~~-~~~~v~~VP~~~ 175 (515)
T TIGR03140 102 PKLDEGIIDRIRRL--NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALF-QDEV-EALGIQGVPAVF 175 (515)
T ss_pred CCCCHHHHHHHHhc--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhC-HHHH-HhcCCcccCEEE
Confidence 44555555555431 23445888999999999999999999988866 588888999999 9999 999999999997
Q ss_pred EEeCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 435 FFPKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 435 lf~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
+ +++ ..+.| ..+.+++.+.+.
T Consensus 176 i--~~~---~~~~g-~~~~~~~~~~l~ 196 (515)
T TIGR03140 176 L--NGE---EFHNG-RMDLAELLEKLE 196 (515)
T ss_pred E--CCc---EEEec-CCCHHHHHHHHh
Confidence 5 554 23445 677777766654
No 248
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.03 E-value=0.0044 Score=56.91 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=81.2
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
+.|..++..+|.+-+.....+-.|+|..|...-+.|.-+...++.|+-+|+. ++|++|=.... . -.|-=...|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~c----I-pNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTC----I-PNYPESNLP 163 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccc----c-CCCcccCCC
Confidence 4689999999988777677788999999999999999999999999999987 89998854433 1 234446799
Q ss_pred EEEEEeCCCCC-----eeecCCCCCCHHHHHHHHH
Q 012415 432 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 432 Ti~lf~~g~~~-----~~~y~gg~~~~e~L~~fI~ 461 (464)
|+++|..|..+ +..+.|-..+.+++..++-
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence 99999988742 3445554567888887764
No 249
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.02 E-value=0.0022 Score=48.47 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=40.1
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHcCCCCCCCEEEEEeCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~---~~~~~I~~~PTi~lf~~g~ 440 (464)
++.|+++||++|+.+...|.+. ++.+..+|++.+ .+.. .+..+..++|+++ .+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILED-GELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCC-HHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 5688999999999999988865 367788898877 4332 0345667888774 3554
No 250
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.02 E-value=0.0034 Score=50.06 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=50.5
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH--HcCCCCCCCEEEEEeCCCCCeeecCCCCCCH
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKHSSKPIKYPSERRDV 453 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~--~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~ 453 (464)
++.|..+||++|...+..|++. +|.|-.+|++.+ ++... +..+...+|++++ ++. ...| .+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-------gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~----~~~G--f~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-------GFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL----SWSG--FRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-------CCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE----EEec--CCH
Confidence 5678899999999999888542 589999999987 54330 2346678999964 332 2223 788
Q ss_pred HHHHHHHHH
Q 012415 454 DSLMAFVDA 462 (464)
Q Consensus 454 e~L~~fI~~ 462 (464)
+.|.+.+..
T Consensus 67 ~~l~~~~~~ 75 (81)
T PRK10329 67 DMINRLHPA 75 (81)
T ss_pred HHHHHHHHh
Confidence 888887653
No 251
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.018 Score=56.46 Aligned_cols=162 Identities=9% Similarity=0.031 Sum_probs=95.7
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCC---------CCcHHHHHHHHHHHHHhCCcEEEEcCChH---H-HH
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG---------RLNPETYRFFDEVEKHFGIRIEYMFPDAV---E-VQ 178 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~DTg---------~~fpeT~~~~~~~~~~~gl~i~~~~p~~~---~-~~ 178 (464)
++|+|+.|||-||.|. +|++..+.++.-+|+-.- .....-.+.+++++++++++++.+.=... . +.
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs 85 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFS 85 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHH
Confidence 4599999999998665 888889999887776332 22335567899999999999987643221 1 22
Q ss_pred HHHHhcCCCCCCCcchhhhhhccccchHHHHh-c--cCcEEEEeeeccCCcccccC-CceeecCCCCcCccCC-------
Q 012415 179 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRAL-K--GLRAWITGQRKDQSPGTRSE-IPVVQVDPVFEGLEGG------- 247 (464)
Q Consensus 179 ~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l-~--~~~~~itG~R~~ES~~~R~~-~~~~~~d~~~~~~~~~------- 247 (464)
.+++++.....+.. .--|....|...+.+.. . +++.+.||.=+--+.+.-.+ ...+.. +.+..++..
T Consensus 86 ~~L~~Y~~G~TPNP-DI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~-~~d~~KDQt~FL~~in 163 (377)
T KOG2805|consen 86 PFLEEYENGRTPNP-DILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLI-SKDMVKDQTYFLSTIN 163 (377)
T ss_pred HHHHHHhcCCCCCC-CccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEee-cccccCCceeEeeccc
Confidence 23333332222322 23688889988554444 3 56788888743222100000 000100 111000000
Q ss_pred -CCCeEEEEeCccCcHHHHHHHHHhcCCCc
Q 012415 248 -VGSLVKWNPVANVKGNDIWNFLRTMDVPI 276 (464)
Q Consensus 248 -~~~~~k~~PI~dWt~~DVw~yi~~~~lp~ 276 (464)
.--.--..||-+|+..+|-...+..|+|.
T Consensus 164 ~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~ 193 (377)
T KOG2805|consen 164 QTQLKRLLFPLGCLTKSEVKKLAKQAGFPN 193 (377)
T ss_pred HHHHHhhhccCcccCHHHHHHHHHhcCCcc
Confidence 00001257999999999999999999983
No 252
>PRK13981 NAD synthetase; Provisional
Probab=96.99 E-value=0.0095 Score=64.50 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc-CC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 012415 101 LEIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 170 (464)
Q Consensus 101 ~eil~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~~-~~-~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~ 170 (464)
...|+..+++.+ ..++|++|||-||+++ .|+.+. ++ ++..+++.+....+++++.++++++.+|++++++
T Consensus 268 ~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i 341 (540)
T PRK13981 268 VLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGVRYDII 341 (540)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 345555666654 5699999999999877 676664 53 5788889888888899999999999999988765
No 253
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.92 E-value=0.0021 Score=51.21 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=57.7
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCC--CeeecCCCCCCH
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSS--KPIKYPSERRDV 453 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~--~~~~y~gg~~~~ 453 (464)
|+.|..+.|+-|..+...+.++.... .+.+-.||++.+ +++. .+|+. .+|.+.+=..++. ....+ ...+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d-~~l~-~~Y~~-~IPVl~~~~~~~~~~~~~~~--~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDED-PELF-EKYGY-RIPVLHIDGIRQFKEQEELK--WRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTT-HHHH-HHSCT-STSEEEETT-GGGCTSEEEE--SSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCC-HHHH-HHhcC-CCCEEEEcCcccccccceeC--CCCCH
Confidence 68899999999999999998865544 589999999988 8888 89996 6999765431111 12222 26899
Q ss_pred HHHHHHHH
Q 012415 454 DSLMAFVD 461 (464)
Q Consensus 454 e~L~~fI~ 461 (464)
+.|.+||+
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999985
No 254
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.91 E-value=0.0022 Score=49.64 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=46.6
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHc---CCCCCCCEEEEEeCCCCCeeecCCCCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK---LQLGSFPTILFFPKHSSKPIKYPSERRD 452 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~---~~I~~~PTi~lf~~g~~~~~~y~gg~~~ 452 (464)
+..|..++|++|+..+..|++. ++.+-.+|++.+ ++.. +. .+..++|++++ +|.. .. +| .+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~~di~~~-~~~~-~~~~~~g~~~vP~v~~--~g~~---~~-~G-~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-------GIAFEEINIDEQ-PEAI-DYVKAQGFRQVPVIVA--DGDL---SW-SG-FR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-------CCceEEEECCCC-HHHH-HHHHHcCCcccCEEEE--CCCc---EE-ec-cC
Confidence 3568889999999999888752 588888999887 5444 33 37778999754 3431 22 22 66
Q ss_pred HHHHHH
Q 012415 453 VDSLMA 458 (464)
Q Consensus 453 ~e~L~~ 458 (464)
.+.|.+
T Consensus 65 ~~~~~~ 70 (72)
T TIGR02194 65 PDKLKA 70 (72)
T ss_pred HHHHHh
Confidence 666654
No 255
>PRK02628 nadE NAD synthetase; Reviewed
Probab=96.89 E-value=0.012 Score=65.42 Aligned_cols=145 Identities=14% Similarity=0.039 Sum_probs=81.6
Q ss_pred CCcEEEEechhHHHHHH-HHHHHc----C---CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 012415 112 GNDIAIAFSGAEDVALI-EYAHLT----G---RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 183 (464)
Q Consensus 112 ~~~i~vafSGGKDS~ll-~L~~~~----~---~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~ 183 (464)
..+++|+.|||+||+|+ .++.+. + .++..+++-+-...++|++.++++++.+|++++++.=. ..+......
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~-~~~~~~~~~ 439 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIR-PAALQMLKD 439 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcH-HHHHHHHHH
Confidence 36799999999999865 555443 3 35777777333356799999999999999998776321 112222221
Q ss_pred cCCC-C--CCCcc---hhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceee-cCCCCcCccCCCCCeEEE
Q 012415 184 KGLF-S--FYEDG---HQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-VDPVFEGLEGGVGSLVKW 254 (464)
Q Consensus 184 ~g~~-~--~~~~~---~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~-~d~~~~~~~~~~~~~~k~ 254 (464)
-+.. . ....+ ... |...+..-|...-. +.-++-||- +.|.. .. .-... .| +---+
T Consensus 440 l~~~~~~~~~~~~~t~~N~-qaR~R~~~L~~~An~~g~lvl~Tgn-~sE~~--~G-y~T~~~GD-----------~~~~~ 503 (679)
T PRK02628 440 IGHPFARGEPVYDVTFENV-QAGERTQILFRLANQHGGIVIGTGD-LSELA--LG-WCTYGVGD-----------HMSHY 503 (679)
T ss_pred hccccccCCcccchhhhhh-hHHHHHHHHHHHHhhcCcEEEcCCc-hhhHH--hC-ceecCCCC-----------ccccc
Confidence 1111 0 00000 112 43333344444333 333555663 33321 11 11111 11 12358
Q ss_pred EeCccCcHHHHHHHHHhcC
Q 012415 255 NPVANVKGNDIWNFLRTMD 273 (464)
Q Consensus 255 ~PI~dWt~~DVw~yi~~~~ 273 (464)
+||.+-...+|+...+..+
T Consensus 504 ~~~~~l~Kt~v~~l~~~~~ 522 (679)
T PRK02628 504 NVNASVPKTLIQHLIRWVI 522 (679)
T ss_pred ccccCCcHHHHHHHHHHHH
Confidence 9999999999999988875
No 256
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.85 E-value=0.0034 Score=49.61 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=49.1
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCC
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 449 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~--~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg 449 (464)
.+.-++.|..+||++|++.+..|.+. ++.+-.+|++.+. .++. +..+..++|.+++ +|+ . .||
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~-~~~g~~~vP~i~i--~g~--~---igG 70 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLR-AVTGATTVPQVFI--GGK--L---IGG 70 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHH-HHHCCCCcCeEEE--CCE--E---EcC
Confidence 44557789999999999999888642 4777778887652 2344 4567889999953 555 2 232
Q ss_pred CCCHHHHHHHH
Q 012415 450 RRDVDSLMAFV 460 (464)
Q Consensus 450 ~~~~e~L~~fI 460 (464)
.++|.+||
T Consensus 71 ---~~~l~~~l 78 (79)
T TIGR02190 71 ---SDELEAYL 78 (79)
T ss_pred ---HHHHHHHh
Confidence 36677665
No 257
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.83 E-value=0.0034 Score=58.14 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=82.1
Q ss_pred CeeecC-cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012415 353 NLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431 (464)
Q Consensus 353 ~v~~L~-~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~P 431 (464)
-|++++ .+.|-+.+...-..-.++|..|-+--+.|..+...+.=||..|+- ++|.+|-...- ... ++|....+|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckikss~~--gas-~~F~~n~lP 213 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIKSSNT--GAS-DRFSLNVLP 213 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEeeeccc--cch-hhhcccCCc
Confidence 588885 577877776332345788999999999999999999999999985 99999986644 556 899999999
Q ss_pred EEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHHh
Q 012415 432 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 432 Ti~lf~~g~~~-----~~~y~gg~~~~e~L~~fI~~l 463 (464)
|+++|++|... ...-.|.......|.+|++..
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999842 112223456777888888764
No 258
>PRK00768 nadE NAD synthetase; Reviewed
Probab=96.77 E-value=0.011 Score=57.97 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=82.9
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc----C-----CCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEE
Q 012415 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT----G-----RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEY 169 (464)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~~----~-----~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl-~i~~ 169 (464)
+.|+..+++.+ ..++|+.|||.||+|+ .|+.+. + +.+.++.+=.-...+++.+..+.+++.+|+ ++..
T Consensus 27 ~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~ 106 (268)
T PRK00768 27 DFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLT 106 (268)
T ss_pred HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEE
Confidence 44555555554 5699999999999877 545442 2 223455444444557788999999999999 5554
Q ss_pred E--cCChHHHHHHHHhcCCCCCCCcchhhhhhccccchHHHHhc-cCcEEEEeeeccCCcccccCCceeecCCCCcCccC
Q 012415 170 M--FPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEG 246 (464)
Q Consensus 170 ~--~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~ 246 (464)
+ .|....+...+...+...-.-....-.-++|- ++--++. .....+.|. ++|..... ..-..|
T Consensus 107 i~I~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm--~~Ly~~An~~~~lvlgT------~N~sE~~~-Gy~Tky----- 172 (268)
T PRK00768 107 VNIKPAVDASVAALEAAGIELSDFVKGNIKARERM--IAQYAIAGATGGLVVGT------DHAAEAVT-GFFTKF----- 172 (268)
T ss_pred EECHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHH--HHHHHHHccCCCEEEcC------CcccHHHh-Cceecc-----
Confidence 4 23333333323221110000000000011111 1111111 223455553 13332211 111111
Q ss_pred CCCCeEEEEeCccCcHHHHHHHHHhcCCC
Q 012415 247 GVGSLVKWNPVANVKGNDIWNFLRTMDVP 275 (464)
Q Consensus 247 ~~~~~~k~~PI~dWt~~DVw~yi~~~~lp 275 (464)
| .+-.-++||.+++..+|+...+..++|
T Consensus 173 G-D~~~d~~pi~~L~KteV~~La~~l~vP 200 (268)
T PRK00768 173 G-DGGADILPLFGLNKRQGRALLAALGAP 200 (268)
T ss_pred C-CccccchhhcCCcHHHHHHHHHHhCCC
Confidence 1 123469999999999999999999987
No 259
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.76 E-value=0.01 Score=64.56 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=69.9
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe-CCCCCeeecCCCC
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP-KHSSKPIKYPSER 450 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~-~g~~~~~~y~gg~ 450 (464)
+...|+.|+.+.|..|..+...++++++ +.+ +|.+...|...+ .+++ ++|+|...|++.++. +|...-+.|.| -
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~-~i~~~~~~~~~~-~~~~-~~~~v~~~P~~~i~~~~~~~~~i~f~g-~ 440 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE-KLNSEAVNRGEE-PESE-TLPKITKLPTVALLDDDGNYTGLKFHG-V 440 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHh-cCC-cEEEEEeccccc-hhhH-hhcCCCcCCEEEEEeCCCcccceEEEe-c
Confidence 3446778888899999999999999984 444 688888998888 8899 899999999999995 55433588887 5
Q ss_pred CCHHHHHHHHHHh
Q 012415 451 RDVDSLMAFVDAL 463 (464)
Q Consensus 451 ~~~e~L~~fI~~l 463 (464)
..-.++..||..+
T Consensus 441 P~G~Ef~s~i~~i 453 (555)
T TIGR03143 441 PSGHELNSFILAL 453 (555)
T ss_pred CccHhHHHHHHHH
Confidence 6667888888765
No 260
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.76 E-value=0.0029 Score=49.73 Aligned_cols=55 Identities=22% Similarity=0.468 Sum_probs=39.5
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHcCCCCCCCEEEEEeCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~---~~~~~I~~~PTi~lf~~g~ 440 (464)
++.|..+||++|......|++. ++.+-.+|++.+ ++.. .+..+..++|+++ -+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~--i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIF--IGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 4678899999999999888753 467777888877 4433 0334678899973 3554
No 261
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.74 E-value=0.0087 Score=49.94 Aligned_cols=94 Identities=10% Similarity=0.182 Sum_probs=63.7
Q ss_pred CcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCC-CCCEE
Q 012415 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLG-SFPTI 433 (464)
Q Consensus 358 ~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~I~-~~PTi 433 (464)
+.++++++++ .+.+++++|+=.++.|+-.......|++......+ .+.++.+|+-++. ..++ ++|+|. .-|-+
T Consensus 6 t~eql~~i~~-~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IA-e~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILE-ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIA-EDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHH-H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHH-HHHT----SSEE
T ss_pred CHHHHHHHHH-hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHH-HHhCCCcCCCcE
Confidence 4577888876 34588999988999999999999999999988876 4999999998771 3567 899996 57999
Q ss_pred EEEeCCCCCeeecCC-CCCCHHHH
Q 012415 434 LFFPKHSSKPIKYPS-ERRDVDSL 456 (464)
Q Consensus 434 ~lf~~g~~~~~~y~g-g~~~~e~L 456 (464)
+++++|+. +...+ ...+.++|
T Consensus 83 ili~~g~~--v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKV--VWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEE--EEEEEGGG-SHHHH
T ss_pred EEEECCEE--EEECccccCCHHhc
Confidence 99999984 22211 24566655
No 262
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.71 E-value=0.0035 Score=52.52 Aligned_cols=94 Identities=10% Similarity=0.160 Sum_probs=65.9
Q ss_pred CCCeeecCcchHHHHHhhcCCCCcEEEEEecC--CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC
Q 012415 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAP--WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 428 (464)
Q Consensus 351 ~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~--wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~ 428 (464)
......++.++++.++. .....+++|..+ -++.+....=++-||.+.+.+ .+..+.++-+.+ ..+. .+|++.
T Consensus 8 ~~g~~~vd~~~ld~~l~---~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e-~~L~-~r~gv~ 81 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLA---APGDAVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAE-RALA-ARFGVR 81 (107)
T ss_dssp T-TEEEE-CCCHHHHHH---CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHH-HHHH-HHHT-T
T ss_pred hcCCeeechhhHHHHHh---CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhH-HHHH-HHhCCc
Confidence 34677889999999987 555555555443 245555555577788888887 677788885555 8999 999999
Q ss_pred CCCEEEEEeCCCCCeeecCCCCCC
Q 012415 429 SFPTILFFPKHSSKPIKYPSERRD 452 (464)
Q Consensus 429 ~~PTi~lf~~g~~~~~~y~gg~~~ 452 (464)
.+|+++||.+|+ +.....|.++
T Consensus 82 ~~PaLvf~R~g~--~lG~i~gi~d 103 (107)
T PF07449_consen 82 RWPALVFFRDGR--YLGAIEGIRD 103 (107)
T ss_dssp SSSEEEEEETTE--EEEEEESSST
T ss_pred cCCeEEEEECCE--EEEEecCeec
Confidence 999999999998 5544443444
No 263
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=96.70 E-value=0.014 Score=56.00 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=69.7
Q ss_pred HHHHHHHHHH---cCCcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 012415 101 LEIMDRALEK---FGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV 175 (464)
Q Consensus 101 ~eil~~a~~~---~~~~i~vafSGGKDS~ll-~L~~~-~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~ 175 (464)
.+.++.+++. -..+|.+.+|||-||.++ .++.+ .+.++..++++.+.....=..+++++++++|++++.+.....
T Consensus 3 r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~ 82 (255)
T PF00733_consen 3 RELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPE 82 (255)
T ss_dssp HHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceeeechh
Confidence 3556666655 245699999999999766 67777 677899999999887765567899999999999877665554
Q ss_pred HHHH----HHHhcCCCCCCCcchhhhhhccccchHHHHh--ccCcEEEEeeeccCCc
Q 012415 176 EVQA----LVRSKGLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP 226 (464)
Q Consensus 176 ~~~~----~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l--~~~~~~itG~R~~ES~ 226 (464)
.+.. .+...+.+... .....+.. .. +.+.. .+.+++++|.-.||-.
T Consensus 83 ~~~~~~~~~~~~~~~p~~~--~~~~~~~~--~~-~~~~a~~~~~~~~ltG~GgDelf 134 (255)
T PF00733_consen 83 DLLDNLEDIIWRLDGPSPL--DDPNSLPL--YL-LARLARENGIRVLLTGQGGDELF 134 (255)
T ss_dssp HHHHHHHHHHHHHT---HH--HHHHHHHH--HH-HHHHHCHTTBSEEE--TTHHHHH
T ss_pred hHHHhHHHHHHHHhCCccc--ccccccHH--HH-HHHhhcccceeEEEecccccccc
Confidence 4322 22222221100 01111111 11 22222 3677999998888754
No 264
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=96.69 E-value=0.0068 Score=57.75 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=68.8
Q ss_pred EEEEechhHHHHHH-HHHHHcCCCe-EEEEEeCC------CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012415 115 IAIAFSGAEDVALI-EYAHLTGRPF-RVFSLDTG------RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (464)
Q Consensus 115 i~vafSGGKDS~ll-~L~~~~~~~i-~vv~~DTg------~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 186 (464)
++++|||||||++. +.+.+. .++ .++++-+. +|.+ ..++++..++.+|+++..+.....
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~~s~~~H~~-~~~~~~~qA~algipl~~~~~~~~----------- 69 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKE-HEVISLVNIMPENEESYMFHGV-NAHLTDLQAESIGIPLIKLYTEGT----------- 69 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCCCccccccc-CHHHHHHHHHHcCCCeEEeecCCC-----------
Confidence 67899999999866 555555 433 33333221 1222 347889999999999865321110
Q ss_pred CCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCC-ceeecCCCCcCccCCCCCeEEEEeCccCcHH
Q 012415 187 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEI-PVVQVDPVFEGLEGGVGSLVKWNPVANVKGN 263 (464)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~-~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~ 263 (464)
....++.|.++++ +.+++++|--..+.. |... .+++. -++.-+.||..-...
T Consensus 70 ------------~e~~~e~l~~~l~~~gv~~vv~GdI~s~~q--r~~~e~v~~~-----------lgl~~~~PLW~~~~~ 124 (223)
T TIGR00290 70 ------------EEDEVEELKGILHTLDVEAVVFGAIYSEYQ--KTRIERVCRE-----------LGLKSFAPLWHRDPE 124 (223)
T ss_pred ------------ccHHHHHHHHHHHHcCCCEEEECCcccHHH--HHHHHHHHHh-----------cCCEEeccccCCCHH
Confidence 1123455556555 456889998776652 3222 22111 157789999888777
Q ss_pred HHHHH
Q 012415 264 DIWNF 268 (464)
Q Consensus 264 DVw~y 268 (464)
++..=
T Consensus 125 ~ll~e 129 (223)
T TIGR00290 125 KLMEE 129 (223)
T ss_pred HHHHH
Confidence 75543
No 265
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.69 E-value=0.0052 Score=47.55 Aligned_cols=55 Identities=18% Similarity=0.353 Sum_probs=39.7
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCCC-CCCEEEEEeCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLG-SFPTILFFPKHS 440 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~---~~~~I~-~~PTi~lf~~g~ 440 (464)
++.|..+||++|......|++. ++.+-.+|++.+ ++... +..+.. ++|+++ -+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGD-PALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 5678899999999999888752 578888898877 44430 234555 899874 4554
No 266
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.67 E-value=0.0059 Score=47.29 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=40.7
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHH----HHHHcCCCCCCCEEEEEeCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~----l~~~~~~I~~~PTi~lf~~g~ 440 (464)
++.|+.+||++|++.+..|++. ++.+-.+|++++ ++ +. +..+-..+|+++ -+|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------gi~~~~~di~~~-~~~~~el~-~~~g~~~vP~v~--i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------GLPYVEINIDIF-PERKAELE-ERTGSSVVPQIF--FNEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------CCceEEEECCCC-HHHHHHHH-HHhCCCCcCEEE--ECCE
Confidence 5778999999999999888862 588888899887 43 44 445667889983 3454
No 267
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.65 E-value=0.0043 Score=51.45 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=37.6
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--HH----HHHHcCCCCCCCEEEEEeCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KE----YAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~--~~----l~~~~~~I~~~PTi~lf~~g~ 440 (464)
++.|..+|||+|++.+..|.++ ++.+..+|++.+. .+ +. +..+..++|.+ |-+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~-~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALS-RLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHH-HhcCCCCcCeE--EECCE
Confidence 6679999999999999877754 3556667776551 12 23 33457899997 44554
No 268
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=96.64 E-value=0.0033 Score=64.46 Aligned_cols=154 Identities=16% Similarity=0.249 Sum_probs=76.7
Q ss_pred EEEechhHHHH-HHHHHHHcC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHH----HHhcCCCC
Q 012415 116 AIAFSGAEDVA-LIEYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQAL----VRSKGLFS 188 (464)
Q Consensus 116 ~vafSGGKDS~-ll~L~~~~~-~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~~~----~~~~g~~~ 188 (464)
+++||||=|+. ++.++++.+ .++..+++|+|-. .+-.+.+++-+..+|. +++++--.......+ +..+.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~-~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA--- 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP-DEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANA--- 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT----
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc-HHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHH---
Confidence 58999999965 446666655 7899999999983 3667778888889997 777763322222121 11111
Q ss_pred CCCcchhhh------hhccccchHHHHhccCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCccC--
Q 012415 189 FYEDGHQEC------CRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV-- 260 (464)
Q Consensus 189 ~~~~~~~~C------c~~~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dW-- 260 (464)
+|+....-+ +-..++..+.+.. +.+++.=|-..-....-|..+.+...+| .+--+.|+-+|
T Consensus 77 ~Yeg~YpL~tsl~RplIa~~~v~~A~~~-ga~~vaHG~TgkGNDqvRFe~~~~al~P----------~l~viaP~Rd~~~ 145 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPLIAKKLVEVAREE-GADAVAHGCTGKGNDQVRFELSIRALAP----------ELKVIAPWRDWEF 145 (388)
T ss_dssp -BTTTB--CCCCHHHHHHHHHHHHHHHH-T-SEEE----TTSSHHHHHHHHHHHHST----------TSEEE-GGGHHHH
T ss_pred HhCCCccccccchHHHHHHHHHHHHHHc-CCeEEeccCCcCCCchhHHHHHHHHhCc----------CCcEecccchhhh
Confidence 222111111 1112222222211 4456654432211111455554444554 45678999887
Q ss_pred cHHHHHHHHHhcCCCcchhhhcCC
Q 012415 261 KGNDIWNFLRTMDVPINSLHSQGY 284 (464)
Q Consensus 261 t~~DVw~yi~~~~lp~npLy~~Gy 284 (464)
+.+|..+|+++||||+..--+.-|
T Consensus 146 ~R~~~i~ya~~~gIpv~~~~~~~y 169 (388)
T PF00764_consen 146 SREEEIEYAKKHGIPVPVTKKKPY 169 (388)
T ss_dssp HHHHHHHHHHHTT----SS---SS
T ss_pred hHHHHHHHHHHcCCCCCCCCCCCC
Confidence 788999999999999865443334
No 269
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.0085 Score=57.94 Aligned_cols=173 Identities=17% Similarity=0.273 Sum_probs=94.6
Q ss_pred HHHHHHHcC-CcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHH
Q 012415 104 MDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQA 179 (464)
Q Consensus 104 l~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~-~~~~i~vv~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~ 179 (464)
++.+-++.| .++.++.|||-||.++ -|+++ .+..+..+|+|+|.+ --|..+..+-+.+++|++++.+-.....+.
T Consensus 12 i~~ir~~vg~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~~VdA~~~Fl~- 90 (315)
T COG0519 12 IEEIREQVGDGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLIVVDAKDRFLS- 90 (315)
T ss_pred HHHHHHHhCCceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHhhcCCceEEEchHHHHHH-
Confidence 333444444 5688999999998766 56666 688899999999965 446667777778889999988844322221
Q ss_pred HHHhcCCCCCCCcchhhhhhccccchHHHHhccC--cEEEEeeecc---CCcccc-cCCceeecCCCCcCccCCCCC---
Q 012415 180 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKD---QSPGTR-SEIPVVQVDPVFEGLEGGVGS--- 250 (464)
Q Consensus 180 ~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~R~~---ES~~~R-~~~~~~~~d~~~~~~~~~~~~--- 250 (464)
.-.|... ++. .+.--...=++-+.+..+.+ +-++-|+=.- ||.... ..+. .+.+. +|-+.
T Consensus 91 --~L~GvtD-PE~-KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~~g~~~~IK------SHHNV-GGLP~~m~ 159 (315)
T COG0519 91 --ALKGVTD-PEE-KRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESGTGKAGTIK------SHHNV-GGLPEDMK 159 (315)
T ss_pred --HhcCCCC-HHH-HHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeecCCCCCccc------ccccc-CCCccccc
Confidence 1223211 000 00000000011222222211 1222222111 121000 1111 11111 11111
Q ss_pred eEEEEeCccCcHHHHHHHHHhcCCCcchhhhcCCcccC
Q 012415 251 LVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIG 288 (464)
Q Consensus 251 ~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siG 288 (464)
+--+-||-+.=.++|-..=++.|||..-+|.+-|+--|
T Consensus 160 lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~RhPFPGPG 197 (315)
T COG0519 160 LKLVEPLRELFKDEVRELGRELGLPEEIVYRHPFPGPG 197 (315)
T ss_pred eeeeHHHHHHhHHHHHHHHHHhCCCHHHhccCCCCCCC
Confidence 33457999999999999999999999999988777444
No 270
>PHA03050 glutaredoxin; Provisional
Probab=96.58 E-value=0.0055 Score=51.68 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=38.8
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--c----HHHHHHcCCCCCCCEEEEEeCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--Q----KEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--~----~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
++.|..+|||+|+..+..|.++.-... .|-.+|++.. + .++. +..+..++|+++ -+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~-~~tG~~tVP~If--I~g~ 78 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFE-QITGGRTVPRIF--FGKT 78 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHH-HHcCCCCcCEEE--ECCE
Confidence 778999999999999988877632221 4556666642 1 2344 455778999994 3454
No 271
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.45 E-value=0.016 Score=56.43 Aligned_cols=84 Identities=17% Similarity=0.281 Sum_probs=57.7
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc----------------CCC------------------
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA----------------DGD------------------ 416 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~----------------d~~------------------ 416 (464)
..+.+|+.|.-+.||+|+++.+.+.++.+. + +|.+..+-. ..+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 457789999999999999999988776543 1 244433321 000
Q ss_pred ---------------cHHHHHHcCCCCCCCEEEEEeC-CCCCeeecCCCCCCHHHHHHHHH
Q 012415 417 ---------------QKEYAKQKLQLGSFPTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 417 ---------------~~~l~~~~~~I~~~PTi~lf~~-g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
+..+. ++++|+++||+++-+. |. +....| ..+.++|.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~-~~lGv~GTPaiv~~d~~G~--~~~v~G-~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLM-DDLGANATPAIYYMDKDGT--LQQVVG-LPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHH-HHcCCCCCCEEEEECCCCC--EEEecC-CCCHHHHHHHhC
Confidence 02366 7899999999988753 43 445555 678999988875
No 272
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.39 E-value=0.015 Score=47.94 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=40.2
Q ss_pred CCcEEEEEe----cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHcCCCCCCCEEEEEeCCC
Q 012415 372 QEPWLVVLY----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 372 ~k~vlV~Fy----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~---~~~~~I~~~PTi~lf~~g~ 440 (464)
..+|+|+-. +||||+|......|.+. ++.+..+|++.+ +++. ++..+-.++|.++ -+|+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vf--i~g~ 76 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLY--VKGE 76 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 455666544 39999999999888764 477888898776 4433 0344567889884 3454
No 273
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.34 E-value=0.029 Score=51.03 Aligned_cols=68 Identities=26% Similarity=0.453 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 389 AMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 389 ~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
.....|.++|+.+.+ .+.|+.++ + .+++ +++++.. |++++|+++..+...|.|...+.++|.+||+.-
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~---~-~~~~-~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTF---N-EELA-KKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE-----HHHH-HHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEc---H-HHHH-HHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 345678999999997 69999888 4 7899 8999998 999999986666899998437999999999863
No 274
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.26 E-value=0.014 Score=46.72 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=44.5
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc--CCC-----------------------------cHHHHHHc
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA--DGD-----------------------------QKEYAKQK 424 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~--d~~-----------------------------~~~l~~~~ 424 (464)
++.|+.+.|++|..+.+.+.++.....+ ++.+....+ ... +..++ .+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA-RA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HH
Confidence 4689999999999999999999865555 566655543 221 02345 68
Q ss_pred CCCCCCCEEEEEe
Q 012415 425 LQLGSFPTILFFP 437 (464)
Q Consensus 425 ~~I~~~PTi~lf~ 437 (464)
+++.++||+++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999998875
No 275
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.21 E-value=0.016 Score=44.64 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=46.6
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCH
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDV 453 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~--~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~ 453 (464)
++.|..+||++|.+.+..|.+. ++.+-.+|++.+. ..+. +..+..++|.+ |-+|+ .+ | ..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~-~~~g~~~vP~i--fi~g~--~i---g---g~ 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLR-AVTGAMTVPQV--FIDGE--LI---G---GS 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHH-HHhCCCCcCeE--EECCE--EE---e---CH
Confidence 6788999999999998877742 4778888887762 1233 34578899997 34565 22 3 36
Q ss_pred HHHHHHH
Q 012415 454 DSLMAFV 460 (464)
Q Consensus 454 e~L~~fI 460 (464)
++|.+|+
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 6777775
No 276
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.20 E-value=0.016 Score=47.02 Aligned_cols=59 Identities=24% Similarity=0.479 Sum_probs=40.5
Q ss_pred CCcEEEEEec----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHcCCCCCCCEEEEEeCCC
Q 012415 372 QEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 372 ~k~vlV~Fya----~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~---~~~~~I~~~PTi~lf~~g~ 440 (464)
+.+|+|+-.. |||++|+..+..|.+. ++.+..+|++.+ .++. .+..+-.++|++ |-+|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDILED-EEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEE--EECCE
Confidence 4566665443 7999999999888765 477888888776 4432 034466789997 34565
No 277
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.19 E-value=0.044 Score=52.28 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=47.3
Q ss_pred CCeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEE
Q 012415 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 411 (464)
Q Consensus 352 ~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~I 411 (464)
..|+.+++++...+......++|.+|+|.+-.||+-..-...|++++++|.+ .+.|+.|
T Consensus 82 s~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~V 140 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIV 140 (237)
T ss_pred CceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehh
Confidence 4788888877555555455899999999999999999999999999999987 3334443
No 278
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.017 Score=45.94 Aligned_cols=52 Identities=19% Similarity=0.438 Sum_probs=39.0
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----HHHHHHcC-CCCCCCEEEE
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKL-QLGSFPTILF 435 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~----~~l~~~~~-~I~~~PTi~l 435 (464)
++.|..++||+|++.+..|.+. ++.+..+|++.++ .+.. ++. +..++|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-------g~~~~~i~~~~~~~~~~~~~~-~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-------GVDYEEIDVDDDEPEEAREMV-KRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-------CCCcEEEEecCCcHHHHHHHH-HHhCCCCCcCEEEE
Confidence 5678899999999999877732 5788888887773 2444 344 6889999864
No 279
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.14 E-value=0.02 Score=45.66 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=43.1
Q ss_pred EEEEechhHHHHHH-HHHHHc---CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 115 IAIAFSGAEDVALI-EYAHLT---GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 115 i~vafSGGKDS~ll-~L~~~~---~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
|++++|||.||.++ +++.+. +..+.++++| ..++.+.+.++++|.+..+.-..
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~Iv~G~~ 57 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV------AFVRILKRLAAEEGADVIILGHN 57 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH------HHHHHHHHHHHHcCCCEEEEcCC
Confidence 46899999999766 777665 6678888888 88999999999999998776443
No 280
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=95.98 E-value=0.048 Score=57.96 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=64.4
Q ss_pred CcEEEEechhHHHHHH-HHHHHcC--CCeEEEEEeCC--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HHHHh
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTG--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----ALVRS 183 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~~--~~i~vv~~DTg--~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~----~~~~~ 183 (464)
.++.+.+|||.||.++ .++.+.. .++..+.++.+ ..+.| ..+++++++++|++.+.+.....++. ..+..
T Consensus 254 ~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E-~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~ 332 (467)
T TIGR01536 254 VPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDE-SPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYH 332 (467)
T ss_pred CceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCCh-HHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHh
Confidence 4588999999999766 6666643 36788888776 34555 35899999999999877654433322 22222
Q ss_pred cCCCCCCCcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCc
Q 012415 184 KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 226 (464)
Q Consensus 184 ~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~ 226 (464)
.+.+. ..|..+ -..-+.+..+ |.+++++|.-.||-.
T Consensus 333 ~~~p~------~~~~~~-~~~~l~~~a~~~G~~vlltG~GaDElf 370 (467)
T TIGR01536 333 LEDPT------TIRASI-PLYLLSKLAREDGVKVVLSGEGADELF 370 (467)
T ss_pred hCCCC------CCchHH-HHHHHHHHHHhcCCEEEEecCcchhcc
Confidence 22111 011111 1112223222 468999999988864
No 281
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=95.88 E-value=0.092 Score=53.28 Aligned_cols=146 Identities=20% Similarity=0.300 Sum_probs=85.1
Q ss_pred CcEEEEechhHH-HHHHHHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHHHH----HHhcC
Q 012415 113 NDIAIAFSGAED-VALIEYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQAL----VRSKG 185 (464)
Q Consensus 113 ~~i~vafSGGKD-S~ll~L~~~-~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~-i~~~~p~~~~~~~~----~~~~g 185 (464)
.+|++|||||=| |+++-++.+ .+-.+..+++|.|-. .+=++.+++-+..+|.. ..++--....+..+ +..++
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~-eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana 83 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANA 83 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC-hHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhc
Confidence 469999999999 566655555 557888899999976 78899999999999975 44432211111111 11121
Q ss_pred CCCCCCcchhhhhhccccchHHHHhc-----------cCcEEEEe---eeccCCcccccCCceeecCCCCcCccCCCCCe
Q 012415 186 LFSFYEDGHQECCRVRKVRPLRRALK-----------GLRAWITG---QRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251 (464)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-----------~~~~~itG---~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~ 251 (464)
. |+.. ..=.-+|.|.|- |.++|.-| -=-|| -|..+.+...+| .+
T Consensus 84 ~---Yeg~------YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQ---vRFe~~~~al~p----------~l 141 (403)
T COG0137 84 L---YEGV------YPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQ---VRFELAILALNP----------DL 141 (403)
T ss_pred e---eecc------ccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCce---eeeeeehhhhCC----------Cc
Confidence 1 1110 011112222221 44566644 33333 233333333333 45
Q ss_pred EEEEeCccC--cHHHHHHHHHhcCCCcchhhh
Q 012415 252 VKWNPVANV--KGNDIWNFLRTMDVPINSLHS 281 (464)
Q Consensus 252 ~k~~PI~dW--t~~DVw~yi~~~~lp~npLy~ 281 (464)
--+.|..+| +.++--+|.++||+|+.-=-+
T Consensus 142 kiiAP~Rew~~~R~~~i~Ya~~~gipv~~~~~ 173 (403)
T COG0137 142 KIIAPWREWNLTREEEIEYAEEHGIPVKATKE 173 (403)
T ss_pred EEEeehhhhccChHHHHHHHHHcCCCccccCC
Confidence 567777554 889999999999999865433
No 282
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.88 E-value=0.072 Score=43.79 Aligned_cols=96 Identities=15% Similarity=0.256 Sum_probs=71.1
Q ss_pred cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-cHHHHHHcCCCC----CCC-E
Q 012415 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLG----SFP-T 432 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~-~~~l~~~~~~I~----~~P-T 432 (464)
-.+|..++. ....|||.|..+- ..-......|.++|+...| .-+++.|||... .+.+| +++.|. --| +
T Consensus 9 ~KdfKKLLR---Tr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLC-KKlKv~~~~kp~~~~ 82 (112)
T cd03067 9 HKDFKKLLR---TRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLC-KKLKVDPSSKPKPVE 82 (112)
T ss_pred hHHHHHHHh---hcCcEEEEEecch-hhHHHHHHHHHHHHHHhcC-ceeEEEEecCChHHHHHH-HHHccCCCCCCCcch
Confidence 367888876 6677888777654 3444555688999999988 678999999873 28999 899998 445 4
Q ss_pred EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 433 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 433 i~lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
+.-|++|.- -..|.- ..+..+|+.|++.
T Consensus 83 LkHYKdG~f-HkdYdR-~~t~kSmv~FlrD 110 (112)
T cd03067 83 LKHYKDGDF-HTEYNR-QLTFKSMVAFLRD 110 (112)
T ss_pred hhcccCCCc-cccccc-hhhHHHHHHHhhC
Confidence 556788874 455654 6789999999863
No 283
>PRK10638 glutaredoxin 3; Provisional
Probab=95.79 E-value=0.029 Score=44.62 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=39.3
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEEEeCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
++.|..+||++|+.....+++. ++.+..+|++.+. .++. +..+...+|+++ .+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~~~~~~~l~-~~~g~~~vP~i~--~~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGDAAKREEMI-KRSGRTTVPQIF--IDAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHH-HHhCCCCcCEEE--ECCE
Confidence 5677889999999999888753 4777788888762 2333 445677899884 3554
No 284
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=95.78 E-value=0.058 Score=55.24 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=90.9
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEE-eCCCCcHHHHHHHHHHH-HHh---CCcEEEEcCChHHHHHHHHhcCCC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSL-DTGRLNPETYRFFDEVE-KHF---GIRIEYMFPDAVEVQALVRSKGLF 187 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~vv~~-DTg~~fpeT~~~~~~~~-~~~---gl~i~~~~p~~~~~~~~~~~~g~~ 187 (464)
++++..|||-||-|. +|+.+.|.++..+|+ ..++.-+++.+-+..+. ..| +.++..+.-+..+.+..+.....
T Consensus 177 k~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~~- 255 (383)
T COG0301 177 KVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKVP- 255 (383)
T ss_pred cEEEEEeCCCChHHHHHHHHhcCCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhcC-
Confidence 577889999999776 888888999887777 55567777777776666 444 33554444444555554444321
Q ss_pred CCCCcchhhhhhccccchHHHHhc-----cCcEEEEeeeccCCcc-cccCCceeecCCCCcCccCCCCCeEEEEeCccCc
Q 012415 188 SFYEDGHQECCRVRKVRPLRRALK-----GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVK 261 (464)
Q Consensus 188 ~~~~~~~~~Cc~~~Kv~Pl~r~l~-----~~~~~itG~R~~ES~~-~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt 261 (464)
..+-|-++|..-++.|-+ |..+++||-.-.|=.. +=.++...+.- -+..-++||+-|.
T Consensus 256 ------~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL~~i~~~----------t~~pIlRPLI~~D 319 (383)
T COG0301 256 ------ESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENLRVIDSV----------TNTPVLRPLIGLD 319 (383)
T ss_pred ------ccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHHHHHHHhc----------cCCceeccccCCC
Confidence 223355555555544432 5579999876655310 11222222211 1356799999999
Q ss_pred HHHHHHHHHhcCC
Q 012415 262 GNDIWNFLRTMDV 274 (464)
Q Consensus 262 ~~DVw~yi~~~~l 274 (464)
.+||-+.-++-|.
T Consensus 320 K~eIi~~Ar~IgT 332 (383)
T COG0301 320 KEEIIEIARRIGT 332 (383)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998875
No 285
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.25 E-value=0.22 Score=41.38 Aligned_cols=89 Identities=13% Similarity=0.263 Sum_probs=62.0
Q ss_pred cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012415 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 438 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~ 438 (464)
.+++++++. ..+.++|-|+..--. .+...|.++|+.+.+ .+.|+... + .++. ..+++ .|++++|+.
T Consensus 8 ~~~l~~f~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~--~~~ivl~~p 73 (104)
T cd03069 8 EAEFEKFLS---DDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---D-KQLL-EKYGY--GEGVVLFRP 73 (104)
T ss_pred HHHHHHHhc---cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---h-HHHH-HhcCC--CCceEEEec
Confidence 455677665 677788877766433 456788899999966 57775443 2 5677 78888 788888832
Q ss_pred ------CCCCeeecCCCCCCHHHHHHHHHH
Q 012415 439 ------HSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 439 ------g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
-......|.| ..+.++|.+||..
T Consensus 74 ~~~~~k~de~~~~y~g-~~~~~~l~~fi~~ 102 (104)
T cd03069 74 PRLSNKFEDSSVKFDG-DLDSSKIKKFIRE 102 (104)
T ss_pred hhhhcccCcccccccC-cCCHHHHHHHHHh
Confidence 2222466887 5789999999975
No 286
>PRK10824 glutaredoxin-4; Provisional
Probab=95.18 E-value=0.063 Score=45.75 Aligned_cols=66 Identities=12% Similarity=0.244 Sum_probs=41.0
Q ss_pred hHHHHHhhcCCCCcEEEEEec----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCCCCCCEE
Q 012415 361 GMENLARLDHRQEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTI 433 (464)
Q Consensus 361 ~f~~~i~~~~~~k~vlV~Fya----~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~---~~~~I~~~PTi 433 (464)
-.+++++ ..+|+|+--. ||||+|+.....|.++ ++.+..+|++.+ .++.. +.-+-..+|.|
T Consensus 7 ~v~~~I~----~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQI 74 (115)
T PRK10824 7 KIQRQIA----ENPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQN-PDIRAELPKYANWPTFPQL 74 (115)
T ss_pred HHHHHHh----cCCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCC-HHHHHHHHHHhCCCCCCeE
Confidence 3455553 4556555443 6999999999888775 355566777766 44430 23355678887
Q ss_pred EEEeCCC
Q 012415 434 LFFPKHS 440 (464)
Q Consensus 434 ~lf~~g~ 440 (464)
++ +|+
T Consensus 75 FI--~G~ 79 (115)
T PRK10824 75 WV--DGE 79 (115)
T ss_pred EE--CCE
Confidence 54 444
No 287
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=95.16 E-value=0.049 Score=51.90 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=35.2
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeE-EEEEeCC------CCcHHHHHHHHHHHHHhCCcEEEE
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFR-VFSLDTG------RLNPETYRFFDEVEKHFGIRIEYM 170 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~-vv~~DTg------~~fpeT~~~~~~~~~~~gl~i~~~ 170 (464)
+++++|||||||++. +.+.+. .++. ++.+-.. .|. ...+.++..++.+|++++.+
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~~s~~~h~-~~~~~~~~qA~algiPl~~~ 64 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-HEVISLVGVFSENEESYMFHS-PNLHLTDLVAEAVGIPLIKL 64 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCCCcccccc-CCHHHHHHHHHHcCCCeEEE
Confidence 378899999999876 555554 3433 2222221 112 23478889999999998655
No 288
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.12 E-value=0.046 Score=47.96 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=28.7
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 403 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~ 403 (464)
..+.+|+.|+.++||+|+.+.|.+.++...+.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 467899999999999999999999998877643
No 289
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=95.12 E-value=0.093 Score=48.97 Aligned_cols=136 Identities=18% Similarity=0.265 Sum_probs=78.2
Q ss_pred cEEEEechhHHHHHHHHH-HHcCCCeEEEEEeCC--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC
Q 012415 114 DIAIAFSGAEDVALIEYA-HLTGRPFRVFSLDTG--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY 190 (464)
Q Consensus 114 ~i~vafSGGKDS~ll~L~-~~~~~~i~vv~~DTg--~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~ 190 (464)
+++||||||-||...-++ +..+ +.+|.| ...++..+-.++++..+|....++.-+..+++.-.- +|.+.+
T Consensus 62 kiaVA~SGG~DSsas~iilR~~g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~i~kGal-nGRfhp- 134 (255)
T COG1365 62 KIAVAYSGGVDSSASAIILRWAG-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLEDIEKGAL-NGRFHP- 134 (255)
T ss_pred eEEEEecCCcchHHHHHHHHhhc-----eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHHHHHhhhc-cCCCCC-
Confidence 599999999999776444 4444 445555 466789999999999999776665433333322211 132211
Q ss_pred CcchhhhhhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEe--CccCcHHHHH
Q 012415 191 EDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP--VANVKGNDIW 266 (464)
Q Consensus 191 ~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~P--I~dWt~~DVw 266 (464)
--.|..+.. ....+..+ +.+++++|.--.-. ...+..+ .+++++|= ++.-|..++-
T Consensus 135 ---CGRCh~~I~-~~V~~k~re~di~~vafGDlLs~G------~~svy~e----------D~i~rlnlPAflAltK~Elr 194 (255)
T COG1365 135 ---CGRCHSMIE-NAVMDKARELDIDVVAFGDLLSTG------YGSVYRE----------DGIFRLNLPAFLALTKDELR 194 (255)
T ss_pred ---cchHHHHHH-HHHHHHHHhcCCeEEEEccccccc------ccceecc----------CCEEEEccHHHHhhCcHHHH
Confidence 123433322 22223333 44588888542221 1112222 24666653 4556889999
Q ss_pred HHHHhcCCCc
Q 012415 267 NFLRTMDVPI 276 (464)
Q Consensus 267 ~yi~~~~lp~ 276 (464)
..+..+++..
T Consensus 195 ~il~~~~~e~ 204 (255)
T COG1365 195 SILKWNGYEL 204 (255)
T ss_pred HHHHhcCccc
Confidence 9999888744
No 290
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=94.90 E-value=0.27 Score=48.13 Aligned_cols=166 Identities=19% Similarity=0.269 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHH-cCC-----CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEE--E
Q 012415 101 LEIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TGR-----PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEY--M 170 (464)
Q Consensus 101 ~eil~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~-~~~-----~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~--~ 170 (464)
.+.|+.-+.+.+ +.++++.|||-||++. .|+.+ .++ .+..+.+..+..-+.+++-+..+.+.+|++... +
T Consensus 13 ~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I 92 (268)
T COG0171 13 VDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINI 92 (268)
T ss_pred HHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHhCCceEEEec
Confidence 344555555544 5699999999999876 66665 332 266666665543677888899999999998544 3
Q ss_pred cCChHHHHHH-HHhcCCCCCCC-cchhhhhhccccchHHHHhccCcEEEEeeeccCCcccccCCceeecCCCCcCccCCC
Q 012415 171 FPDAVEVQAL-VRSKGLFSFYE-DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGV 248 (464)
Q Consensus 171 ~p~~~~~~~~-~~~~g~~~~~~-~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~ 248 (464)
.|....+... ........... ......-+.|.+- +-.+-+.+...+.|+ ++++.... .+-..| |
T Consensus 93 ~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~-lY~~An~~~~lVlGT------gn~sE~~~-Gy~Tky-----G- 158 (268)
T COG0171 93 KPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVI-LYAIANKLGGLVLGT------GNKSELAL-GYFTKY-----G- 158 (268)
T ss_pred HHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHH-HHHHHhhcCCEEEcC------CcHHHHhc-Cceecc-----c-
Confidence 3333322111 11110000000 0001111111111 111112345566664 24443321 111111 1
Q ss_pred CCeEEEEeCccCcHHHHHHHHHhcCCCcchhh
Q 012415 249 GSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 280 (464)
Q Consensus 249 ~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy 280 (464)
.+-.-++||.+-...+|++.++..++|-+-+.
T Consensus 159 Dg~~d~~Pi~~L~KtqV~~La~~l~ipe~I~~ 190 (268)
T COG0171 159 DGAVDINPIADLYKTQVYALARHLGIPEEILK 190 (268)
T ss_pred CcccChhhhcCCcHHHHHHHHHHcCCCHHHhc
Confidence 12345999999999999999998887765443
No 291
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.87 E-value=0.54 Score=38.83 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=63.7
Q ss_pred eec-CcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEE
Q 012415 355 VTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 433 (464)
Q Consensus 355 ~~L-~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi 433 (464)
..+ +.+++++++. ..+..++|-|+..--. .....|.++|+.+.+ .+.|+... + .++. ..+++. .|++
T Consensus 3 ~~i~~~~~~e~~~~--~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~~-~~~i 70 (102)
T cd03066 3 EIINSERELQAFEN--IEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATF---D-SKVA-KKLGLK-MNEV 70 (102)
T ss_pred eEcCCHHHHHHHhc--ccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEEC---c-HHHH-HHcCCC-CCcE
Confidence 444 3455777662 0356666666665433 455678899999965 57775433 2 5667 677764 7999
Q ss_pred EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 434 LFFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 434 ~lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
++|++.......|.+|..+.++|.+||..
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~ 99 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSEEELVDFVEE 99 (102)
T ss_pred EEeCCCCCCCcccCCCCCCHHHHHHHHHH
Confidence 99976433356784447899999999975
No 292
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.38 Score=43.25 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=67.0
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHcCCCCC
Q 012415 371 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 429 (464)
Q Consensus 371 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------~~~l~~~~~~I~~ 429 (464)
.++.||++|| ..++|.|-...-.|++...++...++.++.|..|.. +.+++ +.|++..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~-~~ygv~~ 107 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVA-EAYGVWG 107 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHH-HHhCccc
Confidence 5779999999 789999999999999999999877888988886543 15678 7888733
Q ss_pred ------------CCEEEEEeCCCCCeeecCC--CCCCHHHHHHHHHHh
Q 012415 430 ------------FPTILFFPKHSSKPIKYPS--ERRDVDSLMAFVDAL 463 (464)
Q Consensus 430 ------------~PTi~lf~~g~~~~~~y~g--g~~~~e~L~~fI~~l 463 (464)
.++.+++...+.....+.. -.-..+++.+.|+++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4677777654433333322 124677888888775
No 293
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.58 E-value=0.016 Score=56.83 Aligned_cols=88 Identities=18% Similarity=0.381 Sum_probs=68.8
Q ss_pred CCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCC
Q 012415 370 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 449 (464)
Q Consensus 370 ~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg 449 (464)
++..++=+.||+.||+.-+...|.+.-....|.. +....++-....+.+. .+|++.+.|++++....- +..|.|
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~-s~~~~~~~ps~~~~n~t~--~~~~~~- 147 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVF-SSYGIHSEPSNLMLNQTC--PASYRG- 147 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccch-hccccccCCcceeecccc--chhhcc-
Confidence 4577899999999999999999999988888863 4444443222226677 899999999999886655 678887
Q ss_pred CCCHHHHHHHHHHh
Q 012415 450 RRDVDSLMAFVDAL 463 (464)
Q Consensus 450 ~~~~e~L~~fI~~l 463 (464)
.++..+|++|..++
T Consensus 148 ~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 148 ERDLASLVNFYTEI 161 (319)
T ss_pred cccHHHHHHHHHhh
Confidence 79999999997654
No 294
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=94.55 E-value=0.13 Score=48.43 Aligned_cols=125 Identities=14% Similarity=0.221 Sum_probs=78.5
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeE-EEEEeC--C----CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcC
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFR-VFSLDT--G----RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKG 185 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~-vv~~DT--g----~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g 185 (464)
+++..+||||||... |++.+.+..+. ++.+-+ + +|+| -.++++.+++..|+++.......
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~-n~~~~~~~Ae~~gi~l~~~~~~g----------- 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENGDSYMFHTP-NLELAELQAEAMGIPLVTFDTSG----------- 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCCCeeeeecc-chHHHHHHHHhcCCceEEEecCc-----------
Confidence 367789999999765 88887776643 222222 2 1234 45778888999999987764443
Q ss_pred CCCCCCcchhhhhhccccchHHHHhccCc--EEEEeeeccCCcccccCCceeecCCCCcCccCCCCCeEEEEeCccCcHH
Q 012415 186 LFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN 263 (464)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~--~~itG~R~~ES~~~R~~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~ 263 (464)
...+.++.|.++|.+++ ++++|-=..+- .+..+..+- .. -++.-+.||..-...
T Consensus 70 ------------~~e~eve~L~~~l~~l~~d~iv~GaI~s~y--qk~rve~lc--~~--------lGl~~~~PLWg~d~~ 125 (223)
T COG2102 70 ------------EEEREVEELKEALRRLKVDGIVAGAIASEY--QKERVERLC--EE--------LGLKVYAPLWGRDPE 125 (223)
T ss_pred ------------cchhhHHHHHHHHHhCcccEEEEchhhhHH--HHHHHHHHH--HH--------hCCEEeecccCCCHH
Confidence 12234567777787665 78888543332 222221111 11 257789999998888
Q ss_pred HHHHHHHhcCC
Q 012415 264 DIWNFLRTMDV 274 (464)
Q Consensus 264 DVw~yi~~~~l 274 (464)
++-.-+...|+
T Consensus 126 ell~e~~~~Gf 136 (223)
T COG2102 126 ELLEEMVEAGF 136 (223)
T ss_pred HHHHHHHHcCC
Confidence 88777777664
No 295
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.26 E-value=0.091 Score=47.15 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=35.4
Q ss_pred CCcEEEEEe-cCCChhHHhh-HHHHHHHHHHhcCCCe-EEEEEEcCCC
Q 012415 372 QEPWLVVLY-APWCQFCQAM-EGSYVELADKLAGNGV-KVGKFRADGD 416 (464)
Q Consensus 372 ~k~vlV~Fy-a~wC~~C~~~-~p~~~~la~~~~~~~v-~~~~Id~d~~ 416 (464)
+++++|.|| +.||+.|... .+.|.+..+++...++ .++.|..|..
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~ 76 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP 76 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH
Confidence 456666666 8899999998 9999999999976567 5888876543
No 296
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.12 Score=43.29 Aligned_cols=67 Identities=18% Similarity=0.389 Sum_probs=43.4
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcC----CCCCCCEEEEE
Q 012415 361 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL----QLGSFPTILFF 436 (464)
Q Consensus 361 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~----~I~~~PTi~lf 436 (464)
.+++++. ..+ +|.|..+||++|+.++..|.+ +.- +..++.+|-+.+..++- +.+ +-..+|.+++
T Consensus 6 ~v~~~i~----~~~-VVifSKs~C~~c~~~k~ll~~----~~v-~~~vvELD~~~~g~eiq-~~l~~~tg~~tvP~vFI- 73 (104)
T KOG1752|consen 6 KVRKMIS----ENP-VVIFSKSSCPYCHRAKELLSD----LGV-NPKVVELDEDEDGSEIQ-KALKKLTGQRTVPNVFI- 73 (104)
T ss_pred HHHHHhh----cCC-EEEEECCcCchHHHHHHHHHh----CCC-CCEEEEccCCCCcHHHH-HHHHHhcCCCCCCEEEE-
Confidence 3555553 344 455899999999998877776 332 56788888776644444 222 3458888754
Q ss_pred eCCC
Q 012415 437 PKHS 440 (464)
Q Consensus 437 ~~g~ 440 (464)
+|+
T Consensus 74 -~Gk 76 (104)
T KOG1752|consen 74 -GGK 76 (104)
T ss_pred -CCE
Confidence 555
No 297
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=93.90 E-value=0.27 Score=50.73 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHH-cCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 101 LEIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 101 ~eil~~a~~~~~-~~i~vafSGGKDS~ll-~L~~~-~~~-~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
.+.|.|+.+..| ..++++.|||-||+|+ .|+++ .++ .+..+++|.|..-..--+-+++....+|++|.++...
T Consensus 218 ~e~I~~i~k~vG~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as 294 (552)
T KOG1622|consen 218 EECINEIRKWVGDYKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDAS 294 (552)
T ss_pred HHHHHHHHHHhcccceEEEecCCchHHHHHHHHHHhhCCCceEEEEecccchhhhHHHHHHHHHHHcCCceEEeech
Confidence 456667777666 5688999999999888 44444 564 4889999999864444444445555599999887543
No 298
>PTZ00062 glutaredoxin; Provisional
Probab=93.82 E-value=0.2 Score=47.10 Aligned_cols=66 Identities=21% Similarity=0.378 Sum_probs=42.3
Q ss_pred hHHHHHhhcCCCCcEEEEEe----cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHcCCCCCCCEE
Q 012415 361 GMENLARLDHRQEPWLVVLY----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTI 433 (464)
Q Consensus 361 ~f~~~i~~~~~~k~vlV~Fy----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~---~~~~~I~~~PTi 433 (464)
-+++++. ..+|+|.-- .|+|++|++....|.+. ++.+..+|++.+ .++. ++..+-..+|.+
T Consensus 105 ~v~~li~----~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqV 172 (204)
T PTZ00062 105 KIERLIR----NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-------GVKYETYNIFED-PDLREELKVYSNWPTYPQL 172 (204)
T ss_pred HHHHHHh----cCCEEEEEccCCCCCCChhHHHHHHHHHHc-------CCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeE
Confidence 4455553 455555443 37999999998888753 478888999877 5443 022345677877
Q ss_pred EEEeCCC
Q 012415 434 LFFPKHS 440 (464)
Q Consensus 434 ~lf~~g~ 440 (464)
++ +|+
T Consensus 173 fI--~G~ 177 (204)
T PTZ00062 173 YV--NGE 177 (204)
T ss_pred EE--CCE
Confidence 53 454
No 299
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.77 E-value=0.13 Score=53.74 Aligned_cols=51 Identities=14% Similarity=0.355 Sum_probs=38.8
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHH---HHHHc---------CCCCCCCEEEE
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE---YAKQK---------LQLGSFPTILF 435 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~---l~~~~---------~~I~~~PTi~l 435 (464)
++.|..+|||+|+..+..|.+. +|.+-.+|++++ +. +. ++ .+..++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~-~~~~~~~-~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDD-VKRAEFY-AEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCC-hhHHHHH-HHHhhccccccCCCCccCeEEE
Confidence 6789999999999999877763 588889999876 42 22 12 35678999955
No 300
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=93.75 E-value=0.084 Score=50.21 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=32.1
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeE-EEEEe-CCC---CcHH-HHHHHHHHHHHhCCcEEEEc
Q 012415 114 DIAIAFSGAEDVALI-EYAHLTGRPFR-VFSLD-TGR---LNPE-TYRFFDEVEKHFGIRIEYMF 171 (464)
Q Consensus 114 ~i~vafSGGKDS~ll-~L~~~~~~~i~-vv~~D-Tg~---~fpe-T~~~~~~~~~~~gl~i~~~~ 171 (464)
+++++|||||||++. +.+.+. .++. ++++. .+. .|.. ..++++..++.+|+++..+.
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~ 65 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIP 65 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEE
Confidence 478899999999876 666555 4443 22222 221 1222 26678889999999987653
No 301
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.08 E-value=0.15 Score=46.09 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEE
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 409 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~ 409 (464)
..++.|+.|+...||+|+.+.+.+.++.+++++ ++.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEE
Confidence 468899999999999999999999999998865 45444
No 302
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.95 E-value=0.31 Score=43.21 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=61.9
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHh--cCCCeEEEEEEcCCCc-------------------------------
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKL--AGNGVKVGKFRADGDQ------------------------------- 417 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~--~~~~v~~~~Id~d~~~------------------------------- 417 (464)
..+.+|+.|+...||+|..+.+.+.++.+++ .+ +|.|...+.-...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999998 44 7888877652110
Q ss_pred ------------------------------------HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 418 ------------------------------------KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 418 ------------------------------------~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
...+ ++++|.++||+++ +|+ .+ .+ ..+.++|.++|+
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~tPt~~i--nG~--~~--~~-~~~~~~l~~~Id 161 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLA-RQLGITGTPTFFI--NGK--YV--VG-PYTIEELKELID 161 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHH-HHHT-SSSSEEEE--TTC--EE--ET-TTSHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHH-HHcCCccccEEEE--CCE--Ee--CC-CCCHHHHHHHHc
Confidence 0134 4669999999988 777 32 44 689999999997
Q ss_pred H
Q 012415 462 A 462 (464)
Q Consensus 462 ~ 462 (464)
+
T Consensus 162 ~ 162 (162)
T PF13462_consen 162 K 162 (162)
T ss_dssp H
T ss_pred C
Confidence 5
No 303
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=91.98 E-value=0.19 Score=49.82 Aligned_cols=153 Identities=16% Similarity=0.263 Sum_probs=91.5
Q ss_pred CcEEEEechhHHHHHH-HHHH----Hc--CCCeEEEEEeCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChH----HHHH
Q 012415 113 NDIAIAFSGAEDVALI-EYAH----LT--GRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAV----EVQA 179 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~----~~--~~~i~vv~~DTg~~--fpeT~~~~~~~~~~~gl~i~~~~p~~~----~~~~ 179 (464)
..|.+.-|||||||++ |... +. +....++.+|.|.. -......+.+...+|++++.++.+..- .+.+
T Consensus 52 e~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd~ 131 (347)
T KOG2840|consen 52 ERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMDE 131 (347)
T ss_pred CccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccchHHH
Confidence 4589999999999988 4333 22 33466788898853 345667788889999999988765421 1222
Q ss_pred HHHhcCCCCCCCcchhhh---hhccccchHHHHhc--cCcEEEEeeeccCCcccccCCceeecC----CCCcCc--cC-C
Q 012415 180 LVRSKGLFSFYEDGHQEC---CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVD----PVFEGL--EG-G 247 (464)
Q Consensus 180 ~~~~~g~~~~~~~~~~~C---c~~~Kv~Pl~r~l~--~~~~~itG~R~~ES~~~R~~~~~~~~d----~~~~~~--~~-~ 247 (464)
.+..-|.. .+.| |.+.+.+.|.+.-. +..-..||...|+-. .+--+..+.-| .+.+.. .. .
T Consensus 132 i~~~i~~~------~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~a-etvl~n~lrgds~rl~R~~~~~t~~~e 204 (347)
T KOG2840|consen 132 IVSEIGQE------IRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWA-ETVLMNLLRGDSARLERLTEITTPSLE 204 (347)
T ss_pred HHHHHhhh------hhcCceeecHHHHHHHHhhccccchhhhhhcccchHHH-HHHHHHHHHhHHHHhhhccccccCccc
Confidence 33333321 2333 56666666665554 333577898888864 44333333211 111110 00 1
Q ss_pred CCCeEEEEeCccCcHHHHHHHHHhc
Q 012415 248 VGSLVKWNPVANVKGNDIWNFLRTM 272 (464)
Q Consensus 248 ~~~~~k~~PI~dWt~~DVw~yi~~~ 272 (464)
.+.+-+.+||-+=...+|--|-...
T Consensus 205 ~~~~~r~kplk~~~~keivLya~~~ 229 (347)
T KOG2840|consen 205 MGIIPRLKPLKYASEKEIVLYASLS 229 (347)
T ss_pred cCccccccccccchhhehhhHHHHH
Confidence 1237788999988888887775554
No 304
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=91.68 E-value=0.9 Score=49.24 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=61.5
Q ss_pred CCcEEEEechhHHHHHH-HHHHHcCCC-eE-EEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HHHHh
Q 012415 112 GNDIAIAFSGAEDVALI-EYAHLTGRP-FR-VFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----ALVRS 183 (464)
Q Consensus 112 ~~~i~vafSGGKDS~ll-~L~~~~~~~-i~-vv~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~----~~~~~ 183 (464)
..++.+.+|||-||.++ .++.+.... .. .+.++++.. ++| .++.+++++.+|.+.+.+.-...++. ..+..
T Consensus 230 dvpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D-~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~ 308 (542)
T COG0367 230 DVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPD-AKYARAVAKFLGTPHHEIILTNEELLNALPEVVKA 308 (542)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCch-HHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhh
Confidence 45688899999998776 666665333 22 267777766 455 47899999999997655433333322 22222
Q ss_pred cCCCCCCCcchhhhhhccccchHHHHhc-cCcEEEEeeeccCCc
Q 012415 184 KGLFSFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSP 226 (464)
Q Consensus 184 ~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~R~~ES~ 226 (464)
...|.... .+--.+.+ .+.+.+ +.+++++|.-+||=.
T Consensus 309 ~~~p~~~~----~~~ply~~--~~~a~~~g~kVvLSGeGADElF 346 (542)
T COG0367 309 LDTPGGMA----ASIPLYLL--SRKARAEGEKVVLSGEGADELF 346 (542)
T ss_pred cCCCCccc----chhHHHHH--HHhhhhcCcEEeecCccHHHHh
Confidence 22222111 11111110 011112 447999999999975
No 305
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=91.39 E-value=2 Score=47.14 Aligned_cols=106 Identities=19% Similarity=0.140 Sum_probs=63.6
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCC----CcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHH
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGR----LNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVR 182 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~-~~~i~vv~~DTg~----~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~----~~~~~ 182 (464)
.+|.+..|||-||.++ .++.+. ..++..+.+.... .+.|+ .|++++++++|.+.+.+.....++ ...+.
T Consensus 261 ~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~-~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~ 339 (589)
T TIGR03104 261 VPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEF-EYSDIIAERFHTRHHKIRIPNHRVLPALPEAVA 339 (589)
T ss_pred CceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChH-HHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHH
Confidence 4688999999998766 566554 3456666554321 35664 789999999999887665444332 23333
Q ss_pred hcCCCCCCCcchhhhhhccccchHHHH-hccCcEEEEeeeccCCc
Q 012415 183 SKGLFSFYEDGHQECCRVRKVRPLRRA-LKGLRAWITGQRKDQSP 226 (464)
Q Consensus 183 ~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~-l~~~~~~itG~R~~ES~ 226 (464)
..+.|........ .. -+.++ -++.+++++|.=.||-.
T Consensus 340 ~~~~P~~~~~~~~--~~-----~l~~~a~~~~kV~LsGeGaDElF 377 (589)
T TIGR03104 340 AMSEPMVSHDCVA--FY-----LLSEEVSKHVKVVQSGQGADEVF 377 (589)
T ss_pred HhCCCCCCchHHH--HH-----HHHHHHhCCCeEEeecCchHhcc
Confidence 3443332111111 00 12222 24678999999988875
No 306
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=0.51 Score=51.41 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=61.2
Q ss_pred eecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHH-H--HHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCC-----
Q 012415 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGDQKEYAKQKLQ----- 426 (464)
Q Consensus 355 ~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~----- 426 (464)
.....+-|++... .+||+||....+||-.|+-|... | .++|+.++. +++-+|||.++- +++- +-|.
T Consensus 29 ~pW~~eAf~~A~~---edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREER-PDvD-~~Ym~~~q~ 102 (667)
T COG1331 29 YPWGEEAFAKAKE---EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREER-PDVD-SLYMNASQA 102 (667)
T ss_pred cccCHHHHHHHHH---hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhc-cCHH-HHHHHHHHH
Confidence 3456777888765 89999999999999999999764 3 478888876 788899998887 6665 4442
Q ss_pred ---CCCCCEEEEE-eCCC
Q 012415 427 ---LGSFPTILFF-PKHS 440 (464)
Q Consensus 427 ---I~~~PTi~lf-~~g~ 440 (464)
-.+.|-.+|. ++|+
T Consensus 103 ~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred hccCCCCceeEEECCCCc
Confidence 4589966666 5665
No 307
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=90.28 E-value=4 Score=34.12 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=59.2
Q ss_pred CcchHHHHHhhcCCC-CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012415 358 NRTGMENLARLDHRQ-EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 436 (464)
Q Consensus 358 ~~~~f~~~i~~~~~~-k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf 436 (464)
+.++++.++. .. +.++|-|+..--+ .+...|.++|+.+.+ .+.|+... + .++. .++++. .|.+++|
T Consensus 7 s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~-~~~~-~~~~~~-~~~vvl~ 73 (107)
T cd03068 7 TLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---D-SEIF-KSLKVS-PGQLVVF 73 (107)
T ss_pred CHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---h-HHHH-HhcCCC-CCceEEE
Confidence 3455777664 44 6777777765433 456678899999966 57775433 2 5677 678775 6778888
Q ss_pred ------eCCCCCeeecCCCCCCHHH-HHHHHHH
Q 012415 437 ------PKHSSKPIKYPSERRDVDS-LMAFVDA 462 (464)
Q Consensus 437 ------~~g~~~~~~y~gg~~~~e~-L~~fI~~ 462 (464)
++=......|.|...+.++ |.+||++
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 3333346778762145545 9999974
No 308
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=90.04 E-value=0.91 Score=40.43 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=36.2
Q ss_pred EEEEecC------CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCC----CCCCEEEE
Q 012415 376 LVVLYAP------WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQL----GSFPTILF 435 (464)
Q Consensus 376 lV~Fya~------wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~---~~~~I----~~~PTi~l 435 (464)
+|.|.++ +|++|+.++..|+.+ +|.|-.+|++.+ .++.. +.++- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~-~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMD-SGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566677 899999999888764 588899999877 43330 33343 57887753
No 309
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=89.72 E-value=1.7 Score=47.99 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=61.4
Q ss_pred CcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCC-CcHHHHHHHHHHHHHhCCcEEEEcCChHHH---HHHHHhcCC
Q 012415 113 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGR-LNPETYRFFDEVEKHFGIRIEYMFPDAVEV---QALVRSKGL 186 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~-~~~~i~vv~~DTg~-~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~---~~~~~~~g~ 186 (464)
.+|.+..|||-||.++ .++.+ ...++..+.+.... .+.|. .+++++++++|++.+++......+ .......+.
T Consensus 259 ~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE~-~~A~~vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~ 337 (628)
T TIGR03108 259 VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDES-AYARQVAERYGTNHRVETVDPDDFSLVDRLAGLYDE 337 (628)
T ss_pred CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCChH-HHHHHHHHHhCCCCeEEecCHHHHHHHHHHHHHhCC
Confidence 3588889999998766 55554 34456666665432 34554 789999999999876654443332 222222332
Q ss_pred CCCCCcchhhhhhccccchHHHHhccCcEEEEeeeccCCc
Q 012415 187 FSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSP 226 (464)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R~~ES~ 226 (464)
|... ...... ..-.+.+-++.++.++|.=.||=.
T Consensus 338 P~~~--~~~~~~----~~~~~~a~~~~kV~LsG~GgDElf 371 (628)
T TIGR03108 338 PFAD--SSALPT----YRVCELARKRVTVALSGDGGDELF 371 (628)
T ss_pred CCCC--chHHHH----HHHHHHHHCCCCEEEeccchhhcc
Confidence 2211 111110 011112334678999999888864
No 310
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=89.20 E-value=2 Score=46.74 Aligned_cols=107 Identities=16% Similarity=0.236 Sum_probs=61.0
Q ss_pred CcEEEEechhHHHHHH-HHHHHcC--------------CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLTG--------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 177 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~~--------------~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~ 177 (464)
.++.+.+|||=||.++ .++.+.. +++..+.+.... .|| ..+++++++++|.+.+.+.....+.
T Consensus 228 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~-~~D-~~~A~~vA~~lg~~h~~v~~t~~e~ 305 (554)
T PRK09431 228 VPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG-SPD-LKAAREVADHLGTVHHEIHFTVQEG 305 (554)
T ss_pred CceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC-CCh-HHHHHHHHHHhCCccEEEEeCHHHH
Confidence 4688999999998766 6666532 246666665433 555 4789999999999886655443332
Q ss_pred ----HHHHHhcCCCCCCCcchhhhhhccccchHHHHh--ccCcEEEEeeeccCCc
Q 012415 178 ----QALVRSKGLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP 226 (464)
Q Consensus 178 ----~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l--~~~~~~itG~R~~ES~ 226 (464)
...+.....+.... .+...-. .-+.+.. .+.+++++|.=.||=.
T Consensus 306 ~~~l~~vi~~le~~dp~~--~~~~~p~---yll~~~~~~~gvkvvLsGeGaDElF 355 (554)
T PRK09431 306 LDALRDVIYHLETYDVTT--IRASTPM---YLMARKIKAMGIKMVLSGEGADELF 355 (554)
T ss_pred HHHHHHHHHHHhccCCcc--chhHHHH---HHHHHHHHHcCCEEEEecCchhhhh
Confidence 22222111110000 0000000 0122322 4678999999988865
No 311
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=89.13 E-value=0.5 Score=44.45 Aligned_cols=40 Identities=28% Similarity=0.629 Sum_probs=31.7
Q ss_pred CCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEE
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFR 412 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Id 412 (464)
+++.||.|+.-.||||..+.+.+ ..+.+.+.+ ++.|.++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEec
Confidence 46779999999999999999976 788888876 55555443
No 312
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=88.85 E-value=1.1 Score=46.55 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=44.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHH--cCCcEEEEechhHHHHHH-HHHHHcC-CCeEEEEEeCCCCcHHHH-----------
Q 012415 89 EQFAKELENASPLEIMDRALEK--FGNDIAIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETY----------- 153 (464)
Q Consensus 89 ~~l~~~l~~~~~~eil~~a~~~--~~~~i~vafSGGKDS~ll-~L~~~~~-~~i~vv~~DTg~~fpeT~----------- 153 (464)
++++.+-....+ .+...++.. ...+|+|.||||-||+++ +|+..+- .+-++--+++-..+||++
T Consensus 226 ds~k~rvl~i~~-rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~~~~~PDRktg 304 (520)
T KOG0573|consen 226 DSLKDRVLVIPP-RLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSKEQNVPDRKTG 304 (520)
T ss_pred HHHhhhhhccCh-hHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCcccccCCccHHHH
Confidence 455555555555 333332222 224599999999999877 7888743 333444455555555544
Q ss_pred -HHHHHHHHHhCC
Q 012415 154 -RFFDEVEKHFGI 165 (464)
Q Consensus 154 -~~~~~~~~~~gl 165 (464)
.-++++...|+-
T Consensus 305 r~g~~eL~s~~P~ 317 (520)
T KOG0573|consen 305 RRGLEELQSLYPK 317 (520)
T ss_pred HHHHHHHHHhCCc
Confidence 345566666654
No 313
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=87.56 E-value=1.9 Score=47.19 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=38.3
Q ss_pred CcEEEEechhHHHHHH-HHHHHc----C------CCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEc
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLT----G------RPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMF 171 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~----~------~~i~vv~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~ 171 (464)
.++.+.+|||-||.++ .++.+. . .++..+. .|.. .|| ..+++++++++|.+.+.+.
T Consensus 226 vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~D-~~~Ar~vA~~lg~~h~ev~ 293 (578)
T PLN02549 226 VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFC--VGLEGSPD-LKAAREVADYLGTVHHEFH 293 (578)
T ss_pred CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEe--cCCCCCCH-HHHHHHHHHHhCCCCeEEE
Confidence 4589999999998776 666553 1 2344333 4543 454 5689999999999876543
No 314
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=85.62 E-value=1.9 Score=32.68 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=34.9
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~ 434 (464)
+.|+.+||++|++..-.+++. +-.+.+..+|......++. +......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~~~~~~~-~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GITVELREVELKNKPAEML-AASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCCCCHHHH-HHCCCCCCCEEE
Confidence 467789999999987666544 2134556666544325665 566678999995
No 315
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=84.83 E-value=3.6 Score=31.93 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=49.5
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012415 375 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 436 (464)
Q Consensus 375 vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf 436 (464)
.|..|-+..-+..+.....+.++-+.+-+..+.+-.||+.++ ++++ +.++|-..||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-PQLA-EEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-HhHH-hhCCEEEechhhhc
Confidence 455566666688888888888888887655799999999999 9999 99999999997643
No 316
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=83.42 E-value=11 Score=30.74 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=50.4
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCC
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 451 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~ 451 (464)
+...|+.|..+. ..|..+...++++++--. +|.+-..+. . . ..|++.+..+|+...+.|.| ..
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~--~------~-----~~P~~~i~~~~~~~gIrF~G-iP 81 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDND--D------E-----RKPSFSINRPGEDTGIRFAG-IP 81 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecC--C------C-----CCCEEEEecCCCcccEEEEe-cC
Confidence 344455565555 999999999998887553 355532221 1 1 47999999877543588887 56
Q ss_pred CHHHHHHHHHHh
Q 012415 452 DVDSLMAFVDAL 463 (464)
Q Consensus 452 ~~e~L~~fI~~l 463 (464)
.-.++..||..+
T Consensus 82 ~GhEf~Slilai 93 (94)
T cd02974 82 MGHEFTSLVLAL 93 (94)
T ss_pred CchhHHHHHHHh
Confidence 677888888765
No 317
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=83.35 E-value=5 Score=44.96 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHHHHHcC-CcEEEEechhHHHHHH-HHH-------HH-c--CCC----------------------------eEEEEEe
Q 012415 105 DRALEKFG-NDIAIAFSGAEDVALI-EYA-------HL-T--GRP----------------------------FRVFSLD 144 (464)
Q Consensus 105 ~~a~~~~~-~~i~vafSGGKDS~ll-~L~-------~~-~--~~~----------------------------i~vv~~D 144 (464)
+..+++-+ ..++|+.|||-||+++ .|+ .+ . +.. +..+++-
T Consensus 340 ~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp 419 (700)
T PLN02339 340 WDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMG 419 (700)
T ss_pred HHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECC
Confidence 33344434 5699999999999864 342 12 2 211 3556666
Q ss_pred CCCCcHHHHHHHHHHHHHhCCcEEEE
Q 012415 145 TGRLNPETYRFFDEVEKHFGIRIEYM 170 (464)
Q Consensus 145 Tg~~fpeT~~~~~~~~~~~gl~i~~~ 170 (464)
+-.--++|++-++++++.+|+..+.+
T Consensus 420 ~~~ss~~t~~~A~~la~~lG~~~~~i 445 (700)
T PLN02339 420 SENSSEETRSRAKQLADEIGSSHLDV 445 (700)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 66777999999999999999988665
No 318
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=82.39 E-value=4.7 Score=44.17 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=40.1
Q ss_pred CcEEEEechhHHHHHH-HHHHHcC------------CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012415 113 NDIAIAFSGAEDVALI-EYAHLTG------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~~~------------~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 172 (464)
.++.+.+|||-||.++ .++.+.. .++..+.+... ..|| ..+++++++++|.+.+.+..
T Consensus 238 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~Ar~vA~~lg~~h~~i~~ 308 (586)
T PTZ00077 238 VPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE-GSPD-LKAARKVAEYLGTEHHEFTF 308 (586)
T ss_pred CceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC-CCch-HHHHHHHHHHhCCcCcEEEE
Confidence 4689999999998766 6666532 34555554332 2565 57899999999998765543
No 319
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=82.34 E-value=7.9 Score=29.84 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=42.3
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD 452 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~ 452 (464)
+..|+.++|++|.+.+-.+.+. ++.+-.++++..+ .++. +......+|+++. .+|. ..- .+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~~~~~~~~~~-~~~p~~~vP~l~~-~~~~--~~l-----~e 65 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-------ELDVILYPCPKGSPKRDKFL-EKGGKVQVPYLVD-PNTG--VQM-----FE 65 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-------CCcEEEEECCCChHHHHHHH-HhCCCCcccEEEe-CCCC--eEE-----Ec
Confidence 3457778999999887666654 3445445655431 2444 3345578999853 2222 122 34
Q ss_pred HHHHHHHHHH
Q 012415 453 VDSLMAFVDA 462 (464)
Q Consensus 453 ~e~L~~fI~~ 462 (464)
...|.+||++
T Consensus 66 s~~I~~yL~~ 75 (77)
T cd03041 66 SADIVKYLFK 75 (77)
T ss_pred HHHHHHHHHH
Confidence 5678888875
No 320
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=81.03 E-value=10 Score=39.15 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=64.9
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHhhH--HHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEEEEe
Q 012415 361 GMENLARLDHRQEPWLVVLYAPWCQFCQAME--GSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFP 437 (464)
Q Consensus 361 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~--p~~~~la~~~~~~~v~~~~Id~d~~~-~~l~~~~~~I~~~PTi~lf~ 437 (464)
++-+.|.....++.+||.|-+---.....|. -.+.......-...++-++|+..... ..+. .-|.+..+|.++|+.
T Consensus 7 nipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs-~IYp~v~vPs~ffIg 85 (506)
T KOG2507|consen 7 NIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFS-AIYPYVSVPSIFFIG 85 (506)
T ss_pred chHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhh-hhcccccccceeeec
Confidence 3444444445678899999888777777666 22222222221124666777765431 4566 677888999999995
Q ss_pred CCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 438 KHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 438 ~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
..+. +.....|....++|..-|+++
T Consensus 86 ~sGt-pLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 86 FSGT-PLEVITGFVTADELASSIEKV 110 (506)
T ss_pred CCCc-eeEEeeccccHHHHHHHHHHH
Confidence 4443 666655578899999888765
No 321
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.79 E-value=8.7 Score=41.34 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=54.8
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 450 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~ 450 (464)
-.++|-+.++.+-|..|..+...++++++--. ++.+-..+ . . ...|++.+..+|+...+.|.| .
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~~~---~------~----~~~p~~~~~~~~~~~~i~f~g-~ 80 (517)
T PRK15317 17 LERPIELVASLDDSEKSAELKELLEEIASLSD--KITVEEDS---L------D----VRKPSFSITRPGEDTGVRFAG-I 80 (517)
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEcc---C------C----CCCCEEEEEcCCccceEEEEe-c
Confidence 35666666666689999999999999987653 45553311 1 1 247999999877655688887 5
Q ss_pred CCHHHHHHHHHHh
Q 012415 451 RDVDSLMAFVDAL 463 (464)
Q Consensus 451 ~~~e~L~~fI~~l 463 (464)
..-.++..||..+
T Consensus 81 P~g~Ef~s~i~~i 93 (517)
T PRK15317 81 PMGHEFTSLVLAL 93 (517)
T ss_pred CccHHHHHHHHHH
Confidence 6777888888765
No 322
>PHA03075 glutaredoxin-like protein; Provisional
Probab=80.72 E-value=2.5 Score=35.77 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=26.2
Q ss_pred CcEEEEEecCCChhHHhhHHHHHHHHHHhc
Q 012415 373 EPWLVVLYAPWCQFCQAMEGSYVELADKLA 402 (464)
Q Consensus 373 k~vlV~Fya~wC~~C~~~~p~~~~la~~~~ 402 (464)
|.+||.|.-|.|+-|......+.+|..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999988877763
No 323
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=80.25 E-value=2 Score=35.52 Aligned_cols=78 Identities=10% Similarity=0.128 Sum_probs=43.9
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEEEeCCCCCeeecCC----
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPS---- 448 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~g---- 448 (464)
+..|+.++|+.|++....|++. ++.|-.+|+.++. .++. +-++-.+.+.--++..... ...-.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~~l~-~~~~~~~~~~~~li~~~~~-~~~~l~~~~~ 71 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEPPTKEELK-ELLAKLGLGVEDLFNTRGT-PYRKLGLADK 71 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCCCCHHHHH-HHHHhcCCCHHHHHhcCCc-hHHHcCCccc
Confidence 3578899999999988777653 5777777776541 2333 2223333333334433221 111101
Q ss_pred CCCCHHHHHHHHHH
Q 012415 449 ERRDVDSLMAFVDA 462 (464)
Q Consensus 449 g~~~~e~L~~fI~~ 462 (464)
...+.+++.++|.+
T Consensus 72 ~~ls~~e~~~~l~~ 85 (105)
T cd02977 72 DELSDEEALELMAE 85 (105)
T ss_pred cCCCHHHHHHHHHh
Confidence 14677888887753
No 324
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.58 E-value=9.6 Score=41.02 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=53.6
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCC
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 451 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~ 451 (464)
.++|-+.++.+-|..|..+...++++++.-. ++.+...+.+ ....|++.++.+|+...+.|.| ..
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--ki~~~~~~~~------------~~~~p~~~~~~~~~~~~i~f~g-~P 82 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSD--KISLTQNTAD------------TLRKPSFTILRDGADTGIRFAG-IP 82 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC--CeEEEEecCC------------cCCCCeEEEecCCcccceEEEe-cC
Confidence 4566555555579999999999999887653 4666433322 1346999998777654688887 56
Q ss_pred CHHHHHHHHHHh
Q 012415 452 DVDSLMAFVDAL 463 (464)
Q Consensus 452 ~~e~L~~fI~~l 463 (464)
.-.++..||..+
T Consensus 83 ~g~Ef~s~i~~i 94 (515)
T TIGR03140 83 GGHEFTSLVLAI 94 (515)
T ss_pred CcHHHHHHHHHH
Confidence 677888888764
No 325
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=78.49 E-value=6.9 Score=31.52 Aligned_cols=62 Identities=8% Similarity=-0.077 Sum_probs=51.6
Q ss_pred CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012415 373 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 436 (464)
Q Consensus 373 k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf 436 (464)
..+|=.|.|..-+-++.....+.++-+.+-...+.+-.||+.++ ++++ +.++|-..||++=.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-P~lA-E~~~IvATPtLIK~ 64 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-PQLA-EEDKILATPTLSKI 64 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCEEEecHHhhc
Confidence 45666777888899999888888887766543688899999999 9999 99999999997744
No 326
>PRK09301 circadian clock protein KaiB; Provisional
Probab=77.97 E-value=7 Score=32.49 Aligned_cols=64 Identities=9% Similarity=-0.034 Sum_probs=53.7
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 436 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf 436 (464)
....+|=.|.|..-+..+.....+.++-+.+-...+.+-.||+.++ ++++ +.++|-..||++=.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-PelA-E~~~IvATPTLIK~ 67 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-PQLA-EEDKILATPTLAKI 67 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCeEEecHHhhc
Confidence 3466777888999999999998998887766544688999999999 9999 99999999997644
No 327
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=76.92 E-value=12 Score=28.06 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=37.5
Q ss_pred EEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHH
Q 012415 378 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 456 (464)
Q Consensus 378 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~-~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L 456 (464)
.|+.++|++|++..-.+... + +.|-.+.++... .... +...-..+|++. ..+|. . -.+...|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----g--l~~~~~~~~~~~~~~~~-~~~~~~~vP~L~-~~~~~--~------l~es~aI 65 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----N--IPVEQIILQNDDEATPI-RMIGAKQVPILE-KDDGS--F------MAESLDI 65 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----C--CCeEEEECCCCchHHHH-HhcCCCccCEEE-eCCCe--E------eehHHHH
Confidence 57788999999877666543 2 444333433321 2223 334456789874 33343 1 1345577
Q ss_pred HHHHH
Q 012415 457 MAFVD 461 (464)
Q Consensus 457 ~~fI~ 461 (464)
.+||+
T Consensus 66 ~~yL~ 70 (71)
T cd03037 66 VAFID 70 (71)
T ss_pred HHHHh
Confidence 77775
No 328
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=76.63 E-value=15 Score=28.06 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=45.5
Q ss_pred EEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHH
Q 012415 378 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLM 457 (464)
Q Consensus 378 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~ 457 (464)
.|+.++|++|++..-.++.. +-.+.+..++......++. +...-..+|++. .+|. . ..+...|.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-----~i~~~~~~v~~~~~~~~~~-~~~p~~~vPvL~--~~g~---~-----l~dS~~I~ 64 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-----GIPYELVPVDPEEKRPEFL-KLNPKGKVPVLV--DDGE---V-----LTDSAAII 64 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-----TEEEEEEEEBTTSTSHHHH-HHSTTSBSSEEE--ETTE---E-----EESHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHc-----CCeEEEeccCcccchhHHH-hhcccccceEEE--ECCE---E-----EeCHHHHH
Confidence 47789999999987555543 2124455555544335666 666778999997 4554 1 23566888
Q ss_pred HHHHHh
Q 012415 458 AFVDAL 463 (464)
Q Consensus 458 ~fI~~l 463 (464)
++|++.
T Consensus 65 ~yL~~~ 70 (75)
T PF13417_consen 65 EYLEER 70 (75)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 329
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=74.88 E-value=12 Score=28.62 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=41.3
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHH
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD 454 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~-~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e 454 (464)
+..|+.+.|++|++.+-.+.+. ++.+-.++++... .++. ......+|++..=..|.. ... .+..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-------gi~y~~~~~~~~~~~~~~--~~~~~~vP~l~~~~~~~~-~~l-----~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-------GIPYEVVEVNPVSRKEIK--WSSYKKVPILRVESGGDG-QQL-----VDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-------CCceEEEECCchhHHHHH--HhCCCccCEEEECCCCCc-cEE-----EcHH
Confidence 4567889999999988666544 3444444444321 2333 345568998864322111 122 3455
Q ss_pred HHHHHHHH
Q 012415 455 SLMAFVDA 462 (464)
Q Consensus 455 ~L~~fI~~ 462 (464)
.|.+||++
T Consensus 67 ~I~~yL~~ 74 (77)
T cd03040 67 VIISTLKT 74 (77)
T ss_pred HHHHHHHH
Confidence 78888765
No 330
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=74.80 E-value=10 Score=33.94 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=50.9
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------HHHHH
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------KEYAK 422 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~----------~~l~~ 422 (464)
.+..++++.+.---- +++.+||.=.|+-|+.--+.+ .|+.|.++|++.++.++.+=|.... .++|.
T Consensus 9 ~~~~~~G~~~~l~~~---~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~ 84 (162)
T COG0386 9 SVKDIDGEPVSLSDY---KGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQ 84 (162)
T ss_pred eeeccCCCCccHHHh---CCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHH
Confidence 445555544433222 689999999999999876543 6778888888878888888775431 35665
Q ss_pred HcCCCCCCCEE
Q 012415 423 QKLQLGSFPTI 433 (464)
Q Consensus 423 ~~~~I~~~PTi 433 (464)
..|+|. ||.+
T Consensus 85 ~~YgVt-Fp~f 94 (162)
T COG0386 85 LNYGVT-FPMF 94 (162)
T ss_pred hccCce-eeee
Confidence 566663 5544
No 331
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=74.49 E-value=6.3 Score=29.60 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=42.6
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHH
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 456 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L 456 (464)
..|+.++|+.|+...-.+++..- .+....+|.....+++. +......+|++. .+|. . ..+...|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi-----~~~~~~v~~~~~~~~~~-~~~p~~~vP~l~--~~~~---~-----l~es~aI 65 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV-----SVEIIDVDPDNPPEDLA-ELNPYGTVPTLV--DRDL---V-----LYESRII 65 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC-----ccEEEEcCCCCCCHHHH-hhCCCCCCCEEE--ECCE---E-----EEcHHHH
Confidence 46788999999998766654422 23444455444324565 555677899774 3332 1 1345577
Q ss_pred HHHHHH
Q 012415 457 MAFVDA 462 (464)
Q Consensus 457 ~~fI~~ 462 (464)
..||++
T Consensus 66 ~~yL~~ 71 (73)
T cd03059 66 MEYLDE 71 (73)
T ss_pred HHHHHh
Confidence 777764
No 332
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=73.07 E-value=22 Score=35.33 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=38.6
Q ss_pred CcEEEEechhHH-HHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEE
Q 012415 113 NDIAIAFSGAED-VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEY 169 (464)
Q Consensus 113 ~~i~vafSGGKD-S~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~ 169 (464)
..+++|+|||=| |.+|-.+.+.+-++..+..|.|- .|-.+-+++-+...|-+-.+
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ--~edfe~ar~kAlk~Gakk~~ 61 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQ--KEDFEEARKKALKSGAKKVV 61 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcCceEEEeeccccc--hhhHHHHHHhhhhcCceEEE
Confidence 348899999999 56666677788899999999996 44444455555556654333
No 333
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=72.26 E-value=3.6 Score=27.53 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.4
Q ss_pred cCcHHHHHHHHHhcCCCcchhh
Q 012415 259 NVKGNDIWNFLRTMDVPINSLH 280 (464)
Q Consensus 259 dWt~~DVw~yi~~~~lp~npLy 280 (464)
.|+..|+-.||..|||++.+-.
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCC
Confidence 5999999999999999987643
No 334
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=72.12 E-value=4.9 Score=33.75 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=35.0
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEEEeCCC
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~---~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
..|+.++|+.|++....|++- ++.|-.+|+..+. .++. +-++..+.|..-++...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~-~~~~~~~~~~~~l~~~~~ 60 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEEPPSKEELK-KWLEKSGLPLKKFFNTSG 60 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCceEEecccCCcccHHHHH-HHHHHcCCCHHHHHhcCC
Confidence 468899999999988777652 5777888876652 2222 222333456555554433
No 335
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=70.60 E-value=16 Score=26.21 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=32.7
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcH-HHHHHcCCCCCCCEEEE
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK-EYAKQKLQLGSFPTILF 435 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~-~l~~~~~~I~~~PTi~l 435 (464)
..|+.++|+.|.+..-.+....- .+.+..++.+.... ++. +...-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i-----~~~~~~~~~~~~~~~~~~-~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL-----PYELVPVDLGEGEQEEFL-ALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-----CcEEEEeCCCCCCCHHHH-hcCCCCCCCEEEE
Confidence 35788999999988877765521 23444454433311 244 5566778998753
No 336
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=70.26 E-value=19 Score=33.41 Aligned_cols=92 Identities=20% Similarity=0.306 Sum_probs=61.5
Q ss_pred CCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHHH
Q 012415 372 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAKQ 423 (464)
Q Consensus 372 ~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---------------------------~~~l~~~ 423 (464)
++.+++.|| ++.-+-|-.....|.+..++|+..++.++.+.+|.. +.+++ +
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs-~ 111 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIA-R 111 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHH-H
Confidence 455666666 667788888888888888888877788888877653 15678 7
Q ss_pred cCCCCC------CCEEEEE-eCCCCCee-ecCCC-CCCHHHHHHHHHHhC
Q 012415 424 KLQLGS------FPTILFF-PKHSSKPI-KYPSE-RRDVDSLMAFVDALR 464 (464)
Q Consensus 424 ~~~I~~------~PTi~lf-~~g~~~~~-~y~gg-~~~~e~L~~fI~~l~ 464 (464)
.|++-. +=.++++ ++|..+.+ .|... -|+.+++...|+.||
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 887742 2234455 44543322 22221 389999999998875
No 337
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=70.13 E-value=7.5 Score=29.08 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=34.2
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHcCCCCCCCEEEE
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~---~~~~l~~~~~~I~~~PTi~l 435 (464)
..|+.++|++|++..-.+.+..- .+....+|... ...++. +......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l-----~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI-----DVPLVTVDLAAGEQRSPEFL-AKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC-----CceEEEeecccCccCCHHHH-hhCCCCCCCEEEe
Confidence 46778999999998877766522 23445555432 114555 5556678999964
No 338
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=69.49 E-value=6.8 Score=34.04 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=25.4
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 416 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~ 416 (464)
+..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCC
Confidence 4578899999999987666543 577777777655
No 339
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=67.50 E-value=84 Score=30.51 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=45.8
Q ss_pred CCCeeecCcchHHHHHhhcCCCCcEEEEEecCCC-hh-HHhhHHHHHHHHHHhcC---CCeEEEEEEcCCCcHHHHH---
Q 012415 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWC-QF-CQAMEGSYVELADKLAG---NGVKVGKFRADGDQKEYAK--- 422 (464)
Q Consensus 351 ~~~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC-~~-C~~~~p~~~~la~~~~~---~~v~~~~Id~d~~~~~l~~--- 422 (464)
......|++.+.+-+-. -+++|-|.+|.+-- +. =......+.++-++|.. .+|.+-.||-+.+ ++..+
T Consensus 6 ~~k~ysLS~~T~~~L~~---L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~-~~~~~~~~ 81 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKS---LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN-PSEAEEKA 81 (271)
T ss_pred CCCCccCCHHHHHHHHh---CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC-hHHHHHHH
Confidence 35778888877666544 35677777776541 11 23444445555555532 2799999999777 55551
Q ss_pred HcCCCCC
Q 012415 423 QKLQLGS 429 (464)
Q Consensus 423 ~~~~I~~ 429 (464)
++++|..
T Consensus 82 ~~~Gi~~ 88 (271)
T PF09822_consen 82 KEYGIQP 88 (271)
T ss_pred HhcCCCc
Confidence 3477766
No 340
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=67.44 E-value=7.9 Score=32.75 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=26.3
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 416 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~ 416 (464)
..|+.++|+.|++....+++- ++.+-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCceEEEecCCC
Confidence 468899999999998777762 577888888765
No 341
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=65.82 E-value=7.6 Score=32.33 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=25.5
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 416 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~ 416 (464)
+..|+.|+|+.|++.+..|++- ++.|-.+|+.++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccC
Confidence 3578899999999988766643 467777777655
No 342
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=63.86 E-value=39 Score=32.83 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=56.8
Q ss_pred CCCcEEEEEecCCChh-HHhhHHHHHHHHHHhcCC-Ce----EEEEEEcCCCc-------------------------HH
Q 012415 371 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAGN-GV----KVGKFRADGDQ-------------------------KE 419 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~-C~~~~p~~~~la~~~~~~-~v----~~~~Id~d~~~-------------------------~~ 419 (464)
.++.+|++|.=+.||. |-.....+..+.+.+..+ ++ .|+.+|=+.+. +.
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 5899999999999975 666665555555555431 22 35556542221 35
Q ss_pred HHHHcCCCCCCC-------------EEEEE---eCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 420 YAKQKLQLGSFP-------------TILFF---PKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 420 l~~~~~~I~~~P-------------Ti~lf---~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
+| ++|.|.--+ |+++| ++|+ .+.|.|..++.++|.+-|.
T Consensus 218 va-k~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~--Fvd~~GrN~~~~~~~~~I~ 272 (280)
T KOG2792|consen 218 VA-KKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE--FVDYYGRNYDADELADSIL 272 (280)
T ss_pred HH-HHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc--eehhhcccCCHHHHHHHHH
Confidence 67 788775322 35555 5565 8999997889988877664
No 343
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=63.35 E-value=13 Score=33.98 Aligned_cols=32 Identities=16% Similarity=0.462 Sum_probs=24.5
Q ss_pred EEecCCChhHHhhHHHHHHHHHHhcCCCeEEEE
Q 012415 378 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 410 (464)
Q Consensus 378 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~ 410 (464)
+|..|.|+.|-.++|.+.++...+++ .|.|-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~ 33 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRF 33 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEE
Confidence 68999999999999999999999987 444433
No 344
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=62.32 E-value=95 Score=26.15 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=75.3
Q ss_pred eeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHH---HHcCCCC-
Q 012415 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYA---KQKLQLG- 428 (464)
Q Consensus 354 v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Id~d~~~~~l~---~~~~~I~- 428 (464)
+..|+.+++-+.=. ...+...+|-|--+--+--.+|.+.+.++|+.+.. .++.|+-||=|.. +-+. .+.|+|.
T Consensus 3 lrkl~~~~m~e~we-dd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F-Pllv~yWektF~IDl 80 (120)
T cd03074 3 LRKLKPENMFETWE-DDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF-PLLVPYWEKTFGIDL 80 (120)
T ss_pred hhhccHHHHHHhhh-cccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC-chhhHHHHhhcCccc
Confidence 34456666555543 23467788888888899999999999999999986 4799999999887 5433 2456664
Q ss_pred CCCEEEEEeCCCCC--eeecCC--CCCCHHHHHHHHHHh
Q 012415 429 SFPTILFFPKHSSK--PIKYPS--ERRDVDSLMAFVDAL 463 (464)
Q Consensus 429 ~~PTi~lf~~g~~~--~~~y~g--g~~~~e~L~~fI~~l 463 (464)
+-|.|=+..-.... -....+ ...+.++|..||+.+
T Consensus 81 ~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 81 FRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CCCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 34888887433222 233333 136899999999864
No 345
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=61.57 E-value=14 Score=31.17 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=25.4
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 416 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~ 416 (464)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCC
Confidence 3467889999999988777653 467777777654
No 346
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=60.53 E-value=1.2e+02 Score=26.64 Aligned_cols=90 Identities=13% Similarity=0.187 Sum_probs=58.9
Q ss_pred CCCCcEEEEEecCCCh----hHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-H----------------HHHHHcCCCC
Q 012415 370 HRQEPWLVVLYAPWCQ----FCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-K----------------EYAKQKLQLG 428 (464)
Q Consensus 370 ~~~k~vlV~Fya~wC~----~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~-~----------------~l~~~~~~I~ 428 (464)
++.|+.+|+...|--. .|+...-. +.+.+.+++ ++.+..-|+...+ + ... +.++..
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~s-e~Vi~fl~~-nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~-~~~~~~ 95 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCA-ESIVQYLSQ-NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTI-RNIKTD 95 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcC-HHHHHHHHc-CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHH-HhcCcC
Confidence 3578999999998764 45544211 344455555 7888888887651 1 134 567899
Q ss_pred CCCEEEEEeCCCC--CeeecCCCCCCHHHHHHHHHH
Q 012415 429 SFPTILFFPKHSS--KPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 429 ~~PTi~lf~~g~~--~~~~y~gg~~~~e~L~~fI~~ 462 (464)
.+|.+.++-.... ..+..-.|..+.++|+.-+.+
T Consensus 96 ~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~ 131 (136)
T cd02990 96 QLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIE 131 (136)
T ss_pred CCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHH
Confidence 9999999843332 234444458899998877654
No 347
>PRK12559 transcriptional regulator Spx; Provisional
Probab=59.80 E-value=14 Score=32.08 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=24.3
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 416 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~ 416 (464)
+..|+.++|+.|++....|++- ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeCC
Confidence 4578899999999987666543 466666666544
No 348
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=59.58 E-value=27 Score=26.18 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=33.5
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---cHHHHHHcCCCCCCCEEE
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---~~~l~~~~~~I~~~PTi~ 434 (464)
..|+.+.|+.|+...-.+++..- .+....+|.... .+++. +......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi-----~~e~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL-----ELNLKEVNLMKGEHLKPEFL-KLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC-----CCEEEEecCccCCcCCHHHH-hhCcCCCCCEEE
Confidence 46889999999987766665422 244455554322 14566 555677899995
No 349
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=58.24 E-value=33 Score=33.26 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 438 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~ 438 (464)
.+|+.+++..+.|||+|-...=.+-..-.+|.. +.+....-+.. + .-..+||++|...
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn--~~l~~~~S~~~--d------~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN--FSLEYHYSDPY--D------NYPNTPTLIFNNY 114 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC--eeeEEeecCcc--c------CCCCCCeEEEecC
Confidence 789999999999999998876666555566754 42222221211 1 1247899888644
No 350
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=55.56 E-value=5.9 Score=31.60 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=44.7
Q ss_pred EecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012415 379 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 379 Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~ 434 (464)
|-+..-+........+..+.+.+-+..+.+-.||+.++ ++++ +.++|-..||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ-PELA-EEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS-HSHH-TTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC-HhHH-hHCCeeecceEe
Confidence 44555566778888888888886655899999999999 9999 999999999976
No 351
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=54.90 E-value=31 Score=27.38 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=34.4
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEE
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~l 435 (464)
+..|+.+.|++|+...-.+.+. +-.+.+..+|......++. +......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~~~~~~-~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDKPDWFL-EKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCCcHHHH-hhCCCCCcCEEEE
Confidence 5557788899999887665543 2234555566544323455 5556778999873
No 352
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=53.31 E-value=34 Score=32.80 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=39.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CCeEEEEEEcCCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG---NGVKVGKFRADGD 416 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~---~~v~~~~Id~d~~ 416 (464)
.+..+||-+-..+|.+|..-...++.|..++.. .+|.|+.||-...
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 578899999999999999999999999988865 3799999996543
No 353
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=52.43 E-value=1.1e+02 Score=32.21 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC--Ch
Q 012415 98 ASPLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP--DA 174 (464)
Q Consensus 98 ~~~~eil~~a~~~~-~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p--~~ 174 (464)
....+.+++.+..+ +..-+++|++|-....+-|....++.=.|+. +...|..|..+.+....++|+++..+.. +.
T Consensus 60 nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~ 137 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA 137 (432)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCH
Confidence 35678888888764 4456788998887654422222333334544 4567889999999988899999988764 33
Q ss_pred HHHHHHH
Q 012415 175 VEVQALV 181 (464)
Q Consensus 175 ~~~~~~~ 181 (464)
..+++.+
T Consensus 138 ~~l~~~I 144 (432)
T PRK06702 138 DEIVALA 144 (432)
T ss_pred HHHHHhC
Confidence 3444444
No 354
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=50.86 E-value=85 Score=26.43 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=40.1
Q ss_pred cchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012415 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 438 (464)
Q Consensus 359 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~ 438 (464)
++.+.+++....+-+.++|.=.-+- + .+.+....+.+-....+ ....|.+ + +.+. ++|+|+.+||+++-++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~-g---~~~~t~~~~~~l~~~~~-~~~~v~I--d-P~~F-~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPD-G---SFKPTAKAIQELLRKDD-PCPGVQI--D-PRLF-RQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCC-C---CHHHHHHHHHHHhhccC-CCcceeE--C-hhHH-hhCCceEcCEEEEEcC
Confidence 4556666554334444444333222 2 55555555555443311 1123333 3 7888 9999999999999877
No 355
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=50.71 E-value=13 Score=30.84 Aligned_cols=25 Identities=4% Similarity=0.231 Sum_probs=23.2
Q ss_pred EEEeCccCcHHHHHHHHHhcCCCcc
Q 012415 253 KWNPVANVKGNDIWNFLRTMDVPIN 277 (464)
Q Consensus 253 k~~PI~dWt~~DVw~yi~~~~lp~n 277 (464)
|+.||+.-++.||-.|...+|||+.
T Consensus 3 rIRPL~~v~E~ei~~ya~~~~lp~~ 27 (104)
T TIGR00269 3 RIKPLRYIPEKEVVLYAFLNELKVH 27 (104)
T ss_pred cccccccCCHHHHHHHHHHcCCCcC
Confidence 6899999999999999999999864
No 356
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.97 E-value=38 Score=32.27 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=28.7
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEE
Q 012415 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 411 (464)
Q Consensus 372 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~I 411 (464)
.+.+++.|+...||+|+...|.+.+......+.++.+..+
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~ 123 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREF 123 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEe
Confidence 3789999999999999888888888555554433344333
No 357
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=49.81 E-value=13 Score=33.98 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=15.8
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCC-CCeeecCCCCCCHHH
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHS-SKPIKYPSERRDVDS 455 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~-~~~~~y~gg~~~~e~ 455 (464)
..++ ++++|+++||+++|.+.. ...+...| ..+.+.
T Consensus 137 ~~la-~~m~I~~~Ptlvi~~~~~~~~g~~i~g-~~~~~~ 173 (176)
T PF13743_consen 137 QQLA-REMGITGFPTLVIFNENNEEYGILIEG-YYSYEV 173 (176)
T ss_dssp HHHH-HHTT-SSSSEEEEE--------------------
T ss_pred HHHH-HHcCCCCCCEEEEEecccccccccccc-cccccc
Confidence 6788 899999999999997222 12444444 344443
No 358
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=49.50 E-value=40 Score=30.63 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=36.3
Q ss_pred CCCcEEEEEecCCC-hhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCC
Q 012415 371 RQEPWLVVLYAPWC-QFCQAMEGSYVELADKLAG--NGVKVGKFRADGD 416 (464)
Q Consensus 371 ~~k~vlV~Fya~wC-~~C~~~~p~~~~la~~~~~--~~v~~~~Id~d~~ 416 (464)
.++++||.|.-+.| ..|-.+...+.++.+.+.. .++.++.|.+|-.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 58999999999999 5788888888888887764 3688888888754
No 359
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=48.82 E-value=37 Score=29.88 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=45.7
Q ss_pred CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC----CCCEEEEEeCCCCCeeecCC
Q 012415 373 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG----SFPTILFFPKHSSKPIKYPS 448 (464)
Q Consensus 373 k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~----~~PTi~lf~~g~~~~~~y~g 448 (464)
-.-++.|++|.|+-|..-...++ .+++.+-.+..++- ..+- ++|+|. +==|.++ +|. .++
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~d~-~alK-~~~gIp~e~~SCHT~VI--~Gy--~vE--- 88 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETDDF-LALK-RRLGIPYEMQSCHTAVI--NGY--YVE--- 88 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecCcH-HHHH-HhcCCChhhccccEEEE--cCE--EEe---
Confidence 34678899999999987655444 12577777777665 4554 777774 3334332 443 222
Q ss_pred CCCCHHHHHHHHHH
Q 012415 449 ERRDVDSLMAFVDA 462 (464)
Q Consensus 449 g~~~~e~L~~fI~~ 462 (464)
|-.-.+.|..++++
T Consensus 89 GHVPa~aI~~ll~~ 102 (149)
T COG3019 89 GHVPAEAIARLLAE 102 (149)
T ss_pred ccCCHHHHHHHHhC
Confidence 24667777777653
No 360
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.69 E-value=30 Score=27.10 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=35.9
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-------------H--HHHHHcCCCCCCCEEEEEeCCC
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-------------K--EYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~-------------~--~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
+.|++.-||.|..+...++++ ++.+-.|++...- + +-. +.++--++|.+++ .+|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v-k~~gyiGIPall~-~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-------NVDYDFVEITESMANLKRFLHLRDSRPEFDEV-KSNGYIGIPALLT-DDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-------CCCceeeehhhhhhhHHHHHhhhccchhHHhh-hhcCcccceEEEe-CCCc
Confidence 789999999999988888776 3444445544320 1 123 4556668999864 4555
No 361
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.65 E-value=30 Score=32.24 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=31.5
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCC--CCCHHHHHHHHHH
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE--RRDVDSLMAFVDA 462 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg--~~~~e~L~~fI~~ 462 (464)
..++ +++++.+|||+++-.+|+. .....| ..+.+++..++.+
T Consensus 164 r~l~-~rlg~~GfPTl~le~ng~~--~~l~~g~y~~~~~~~~arl~~ 207 (212)
T COG3531 164 RRLM-QRLGAAGFPTLALERNGTM--YVLGTGAYFGSPDAWLARLAQ 207 (212)
T ss_pred HHHH-HHhccCCCCeeeeeeCCce--EeccCCcccCCcHHHHHHHHH
Confidence 4677 8999999999999999984 333332 3467788877764
No 362
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=48.34 E-value=29 Score=30.12 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=24.1
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 416 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~ 416 (464)
+..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEECCCC
Confidence 4567889999999977555542 467777776554
No 363
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=48.31 E-value=1.2e+02 Score=31.69 Aligned_cols=76 Identities=22% Similarity=0.355 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHcC-CcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 012415 98 ASPLEIMDRALEKFG-NDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV 175 (464)
Q Consensus 98 ~~~~eil~~a~~~~~-~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~ 175 (464)
....+.+++.+.... ..-+++||.|--+..+-++.-....=.|+..+. .|-.|+.+.+++.+++|+++..+-|...
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~--~YG~t~~~~~~~l~~~gi~~~~~d~~~~ 138 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDD--LYGGTYRLFEKILQKFGVEVTFVDPGDD 138 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCC--ccchHHHHHHHHHHhcCeEEEEECCCCh
Confidence 455667777666544 446788886655432212222222234554454 5889999999999999999998877554
No 364
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=48.03 E-value=1.7e+02 Score=24.74 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=52.4
Q ss_pred cEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-----------HHHHHHcCCCCC-CCEEEEE-eCC
Q 012415 374 PWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-----------KEYAKQKLQLGS-FPTILFF-PKH 439 (464)
Q Consensus 374 ~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~-----------~~l~~~~~~I~~-~PTi~lf-~~g 439 (464)
-+||.|- ++--+.-+.....|.+-...+...++.++.+--+... ..+. ++|++.. .-+++++ ++|
T Consensus 11 R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~~~~f~~vLiGKDG 89 (118)
T PF13778_consen 11 RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIPPGGFTVVLIGKDG 89 (118)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCCCCceEEEEEeCCC
Confidence 3444444 3455666777777777555666556777766322221 2667 7888642 2344444 667
Q ss_pred CCCeeecCCCCCCHHHHHHHHHHh
Q 012415 440 SSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 440 ~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
+. -..+.. ..+.++|...|+++
T Consensus 90 ~v-K~r~~~-p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 90 GV-KLRWPE-PIDPEELFDTIDAM 111 (118)
T ss_pred cE-EEecCC-CCCHHHHHHHHhCC
Confidence 63 334444 89999999999865
No 365
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=47.97 E-value=54 Score=30.79 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=33.7
Q ss_pred CCCcEEEEEecCCCh-hHHhhHHHHHHHHHHhc-C--CCeEEEEEEcCC
Q 012415 371 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLA-G--NGVKVGKFRADG 415 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~-~C~~~~p~~~~la~~~~-~--~~v~~~~Id~d~ 415 (464)
.++++||.|.=+.|| -|-.+...+..+.+++. . .++.++-|-+|-
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP 114 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP 114 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC
Confidence 689999999877786 69888888988888887 3 355555554443
No 366
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=47.04 E-value=55 Score=29.49 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=32.2
Q ss_pred EEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH
Q 012415 139 RVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL 180 (464)
Q Consensus 139 ~vv~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~ 180 (464)
.|+++|||.. -++-.+.++++++.++++++++.-...-++.+
T Consensus 120 ~~~~Idtg~~~~~~~~~~~~~~a~~~~l~~~~~~g~l~~l~~l 162 (166)
T PF07796_consen 120 RVVLIDTGVYDEEDFEEKVREFAEFLGLPIEEIPGDLDLLEKL 162 (166)
T ss_pred eEEEEecccccchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHH
Confidence 6899999975 44468899999999999999885554444433
No 367
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=44.52 E-value=64 Score=28.57 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=26.7
Q ss_pred EEEechhHHHH---HHHHHHHc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 012415 116 AIAFSGAEDVA---LIEYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 170 (464)
Q Consensus 116 ~vafSGGKDS~---ll~L~~~~-~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~ 170 (464)
.|+||||+ .. +..|+... ...++ +.++||..+++.. +++.+. +++.+.
T Consensus 64 gVt~SGGE-l~~~~l~~ll~~lk~~Gl~-i~l~Tg~~~~~~~---~~il~~--iD~l~~ 115 (147)
T TIGR02826 64 CVLFLGGE-WNREALLSLLKIFKEKGLK-TCLYTGLEPKDIP---LELVQH--LDYLKT 115 (147)
T ss_pred EEEEechh-cCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHH---HHHHHh--CCEEEE
Confidence 68999999 31 22344332 12343 4688998887743 344333 455554
No 368
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.59 E-value=42 Score=32.07 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=29.9
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
...+ ++++|+++||++| +++ +...| ..+.+-|..-|+++
T Consensus 174 ~~~A-~e~gI~gVP~fv~--d~~---~~V~G-aq~~~v~~~al~~~ 212 (225)
T COG2761 174 EAAA-QEMGIRGVPTFVF--DGK---YAVSG-AQPYDVLEDALRQL 212 (225)
T ss_pred HHHH-HHCCCccCceEEE--cCc---EeecC-CCCHHHHHHHHHHH
Confidence 3456 7999999999998 444 56666 68888888888764
No 369
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=42.81 E-value=38 Score=30.63 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
...+ .+++|.++||+++ +|+ ..+.| ....+.|.+.|+
T Consensus 157 ~~~a-~~~gv~GvP~~vv--~g~---~~~~G-~~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEA-RQLGVFGVPTFVV--NGK---YRFFG-ADRLDELEDALQ 193 (193)
T ss_dssp HHHH-HHTTCSSSSEEEE--TTT---EEEES-CSSHHHHHHHH-
T ss_pred HHHH-HHcCCcccCEEEE--CCE---EEEEC-CCCHHHHHHHhC
Confidence 5667 7899999999999 555 44555 578888887763
No 370
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=42.64 E-value=1.4e+02 Score=31.03 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh-HH
Q 012415 99 SPLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA-VE 176 (464)
Q Consensus 99 ~~~eil~~a~~~~-~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~-~~ 176 (464)
...+.++..+... +..-++.||.|--.+.+-+.....+.=.|+..+ ..|..|+.+++++..++|+++..+-+.. ..
T Consensus 55 Pt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~--~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~ 132 (386)
T PF01053_consen 55 PTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASD--DLYGGTYRLLEELLPRFGVEVTFVDPTDLEA 132 (386)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEES--SSSHHHHHHHHHCHHHTTSEEEEESTTSHHH
T ss_pred ccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecC--CccCcchhhhhhhhcccCcEEEEeCchhHHH
Confidence 3446666655542 233566777665543222222233333455544 5699999999999999999999987743 44
Q ss_pred HHHHHH
Q 012415 177 VQALVR 182 (464)
Q Consensus 177 ~~~~~~ 182 (464)
+...+.
T Consensus 133 l~~~l~ 138 (386)
T PF01053_consen 133 LEAALR 138 (386)
T ss_dssp HHHHHC
T ss_pred HHhhcc
Confidence 544443
No 371
>PRK09028 cystathionine beta-lyase; Provisional
Probab=41.90 E-value=1.7e+02 Score=30.31 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=43.3
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 101 LEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 101 ~eil~~a~~~~-~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
.+.+++.+... +..-++.++||.....+-+.....+.=.|+..|.. |+.|+.++....+++|+++..+.+.
T Consensus 63 ~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~--Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 63 HFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSC--YEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCC--cHHHHHHHHHhhhhcceEEEEECCC
Confidence 44555555542 22234677888775433211123333356666654 7889999888888899998877654
No 372
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.70 E-value=33 Score=31.10 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=25.2
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAG 403 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~ 403 (464)
|.+|+-+.||+|-...+.+.++.+.+++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6688899999999999999999999843
No 373
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=40.49 E-value=36 Score=29.24 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=26.6
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
.+++ .+++|.++||+++ +|+ .+.| ..+.+.|.+.|+
T Consensus 119 ~~~~-~~~gi~gtPt~~v--~g~----~~~G-~~~~~~l~~~i~ 154 (154)
T cd03023 119 RQLA-RALGITGTPAFII--GDT----VIPG-AVPADTLKEAID 154 (154)
T ss_pred HHHH-HHcCCCcCCeEEE--CCE----EecC-CCCHHHHHHHhC
Confidence 4667 7899999999876 343 3455 688888887763
No 374
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=40.08 E-value=1.8e+02 Score=29.89 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 99 SPLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 99 ~~~eil~~a~~~~-~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
...+.+++.+..+ +..-++.+++|.....+-+..-.++.=.|+..|. .|+.|+.+++...+.+|+++..+.+.
T Consensus 50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~--~y~~t~~~~~~~~~~~gi~v~~~d~~ 123 (377)
T TIGR01324 50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDS--AYEPTRYFCDIVLKRMGVDITYYDPL 123 (377)
T ss_pred ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCC--CcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 3455666666553 4345567788877544322222344445665554 47889999988888999998877554
No 375
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=39.27 E-value=89 Score=22.97 Aligned_cols=53 Identities=11% Similarity=0.017 Sum_probs=32.5
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---cHHHHHHcCCCCCCCEEEE
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~---~~~l~~~~~~I~~~PTi~l 435 (464)
..|+.+.|+.|....-.+++..- .+....+|.... ..++. +......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~-----~~~~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI-----PYEWVEVDILKGETRTPEFL-ALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-----CcEEEEecCCCcccCCHHHH-HhCCCCCCCEEEE
Confidence 45788999999988766665422 244455554221 14455 4455678999864
No 376
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.17 E-value=89 Score=25.95 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=35.2
Q ss_pred cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCC-CCCCCEE-EEEeCCC
Q 012415 381 APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ-LGSFPTI-LFFPKHS 440 (464)
Q Consensus 381 a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~-I~~~PTi-~lf~~g~ 440 (464)
.|-|++..+....+..+. -+.|..+|+-.+ +++. +.+. ....||+ -+|-+|+
T Consensus 27 ~P~CGFS~~~vqiL~~~g------~v~~~~vnVL~d-~eiR-~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 27 FPQCGFSAQAVQILSACG------VVDFAYVDVLQD-PEIR-QGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred CCCCCccHHHHHHHHHcC------CcceeEEeeccC-HHHH-hccHhhcCCCCCceeeECCE
Confidence 478888888776666542 168999999888 7877 5554 2355665 3556665
No 377
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=39.07 E-value=67 Score=28.92 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=30.8
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc
Q 012415 375 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA 413 (464)
Q Consensus 375 vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~ 413 (464)
.|.+||..-||+|-...+.+.++.+.+.+-.|.+.-+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 477899999999999999999999999543444444543
No 378
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=38.70 E-value=1.3e+02 Score=28.34 Aligned_cols=64 Identities=25% Similarity=0.386 Sum_probs=39.2
Q ss_pred CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 012415 383 WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 383 wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~ 462 (464)
.|+.|+.+.-.+. .++..+.+-.||.... ++.. ..+.=.+-|=++.|.. + ...+.+.|..||++
T Consensus 20 dcpf~qr~~m~L~-----~k~~~f~vttVd~~~k-p~~f-~~~sp~~~~P~l~~d~-~--------~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LKGVPFKVTTVDLSRK-PEWF-LDISPGGKPPVLKFDE-K--------WVTDSDKIEEFLEE 83 (221)
T ss_pred CChhHHHHHHHHH-----HcCCCceEEEeecCCC-cHHH-HhhCCCCCCCeEEeCC-c--------eeccHHHHHHHHHH
Confidence 4999998877766 2222578889999888 5555 3433333333444533 2 13567777777765
No 379
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=38.03 E-value=1e+02 Score=25.89 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=38.5
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 415 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~ 415 (464)
+++++||.=.|+-|+.=. .-..|++|.++|+..++.|+.+=|..
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 689999999999999999 66699999999987679999887765
No 380
>PRK08114 cystathionine beta-lyase; Provisional
Probab=36.87 E-value=2.7e+02 Score=29.00 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHcC-CcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 99 SPLEIMDRALEKFG-NDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 99 ~~~eil~~a~~~~~-~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
...+.+++.+.... ..-++.|+.|--.+-+-+.....+.=.|+.. ...|..|+.+++++.+++|+++.++.+.
T Consensus 62 Pt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~--~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~ 135 (395)
T PRK08114 62 LTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMT--GTAYEPTQDFCSKILSKLGVTTTWFDPL 135 (395)
T ss_pred hhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEe--CCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 45677777666543 3467788877664332111112332244433 4468899999999999999999888654
No 381
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=36.05 E-value=1e+02 Score=29.39 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=61.0
Q ss_pred HHHHHHHHcC--CCeEE----EEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH---------HHHHHHhcCCCCCC
Q 012415 126 ALIEYAHLTG--RPFRV----FSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE---------VQALVRSKGLFSFY 190 (464)
Q Consensus 126 ~ll~L~~~~~--~~i~v----v~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~---------~~~~~~~~g~~~~~ 190 (464)
-++.|.+-.+ ++... -|+|-|+.--||..++--+..+|.-+|..++-.... ..+...++|-
T Consensus 60 DL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGn---- 135 (306)
T KOG0373|consen 60 DLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGN---- 135 (306)
T ss_pred HHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCC----
Confidence 3556666533 23322 378999999999999999999999898877644322 1122233332
Q ss_pred CcchhhhhhccccchHHHHhccCcEEEEe
Q 012415 191 EDGHQECCRVRKVRPLRRALKGLRAWITG 219 (464)
Q Consensus 191 ~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG 219 (464)
.+..++||.+.-..++...+.+.-..+-|
T Consensus 136 an~wkycckVFD~LtlaAiID~~vLCVHG 164 (306)
T KOG0373|consen 136 ANVWKYCCKVFDFLTLAAIIDEKVLCVHG 164 (306)
T ss_pred chHHHHHHHHHhhhhHHHHhcCcEEEEcC
Confidence 13468999999999999888876655544
No 382
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=35.96 E-value=1.1e+02 Score=30.27 Aligned_cols=60 Identities=13% Similarity=0.015 Sum_probs=41.9
Q ss_pred EEEEechhHHHHHHHHHHHcCCC-eEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012415 115 IAIAFSGAEDVALIEYAHLTGRP-FRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (464)
Q Consensus 115 i~vafSGGKDS~ll~L~~~~~~~-i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 176 (464)
|+=-+|.||-.+.+|++.....+ -.++|+||..-|+. ++++++....--++.+..|....
T Consensus 65 iyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p--~r~~~l~~~~~d~l~v~~~~~~e 125 (279)
T COG0468 65 IYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDP--ERAKQLGVDLLDNLLVSQPDTGE 125 (279)
T ss_pred EecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCH--HHHHHHHHhhhcceeEecCCCHH
Confidence 44457889988888888775433 38999999986655 45666666633367777777554
No 383
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=35.74 E-value=99 Score=30.01 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHcC---CcE--EEEec-hhHHHHHHHHHHHc-------CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC
Q 012415 99 SPLEIMDRALEKFG---NDI--AIAFS-GAEDVALIEYAHLT-------GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI 165 (464)
Q Consensus 99 ~~~eil~~a~~~~~---~~i--~vafS-GGKDS~ll~L~~~~-------~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl 165 (464)
+-.+-|+.++.- | +.| +++-| -||-...++|+... +.+-.|+|+||...|+- +-+.++.+++++
T Consensus 22 Tg~~~lD~~L~G-Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~--~Rl~~i~~~~~~ 98 (256)
T PF08423_consen 22 TGCKSLDELLGG-GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP--ERLQQIAERFGL 98 (256)
T ss_dssp -SSHHHHHHTTS-SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H--HHHHHHHHHTTS
T ss_pred CCCHHHHHhhCC-CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH--HHHHHHhhcccc
Confidence 344667776622 2 111 23444 78988888887653 34678999999999874 445567777765
No 384
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.64 E-value=1.1e+02 Score=26.37 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=29.0
Q ss_pred HHHHHHHHHc--CCcEEEEechhH----------HHHHH-----HHHHHcCCCeEEEEEeCCC
Q 012415 102 EIMDRALEKF--GNDIAIAFSGAE----------DVALI-----EYAHLTGRPFRVFSLDTGR 147 (464)
Q Consensus 102 eil~~a~~~~--~~~i~vafSGGK----------DS~ll-----~L~~~~~~~i~vv~~DTg~ 147 (464)
+-++..++.. +..|.+.|+|+| |++.. .-+.....++.++++|.|.
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 4444555544 345999999999 34433 2333356678888888883
No 385
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=35.64 E-value=2.2e+02 Score=22.96 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=40.3
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 012415 382 PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 382 ~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
..|++|++..=.+.+. +-.+.+..||.......+. +-.-...+|++. .+|. .- .+...|.++|+
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p~~~~-~~nP~g~vPvL~--~~~~---~i-----~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKPEDLK-DLAPGTQPPFLL--YNGE---VK-----TDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCCCHHHH-HhCCCCCCCEEE--ECCE---Ee-----cCHHHHHHHHH
Confidence 5799999977666543 3134556666655424455 555567899665 3433 22 35567888887
Q ss_pred Hh
Q 012415 462 AL 463 (464)
Q Consensus 462 ~l 463 (464)
+.
T Consensus 84 e~ 85 (91)
T cd03061 84 ET 85 (91)
T ss_pred HH
Confidence 64
No 386
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=34.74 E-value=1.5e+02 Score=26.93 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=39.2
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 012415 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 415 (464)
Q Consensus 371 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~ 415 (464)
+++.+||.=-|+.|+.=..--..|..|.++|+..++.++.+=|..
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 689999999999999998666699999999987789999988754
No 387
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=34.21 E-value=70 Score=27.82 Aligned_cols=22 Identities=5% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCC
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
+.+. ++|+|+.+|++++.+++.
T Consensus 61 P~lF-~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 61 PQWF-KQFDITAVPAFVVVKDGL 82 (130)
T ss_pred hHHH-hhcCceEcCEEEEECCCC
Confidence 8888 999999999999998773
No 388
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=32.90 E-value=3.2e+02 Score=28.42 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=43.3
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012415 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (464)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 172 (464)
.+.+++.+.. ++..-++.+++|.+...+-+.....+.-.|+..+ ..|+.|+.......+.+|++++.+.+
T Consensus 59 ~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 59 TDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSS--YLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred HHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEEC--CCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 3445555544 4444567788887764432222223333455443 56788999888888999999887754
No 389
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.40 E-value=1.7e+02 Score=30.06 Aligned_cols=92 Identities=11% Similarity=0.201 Sum_probs=62.7
Q ss_pred CcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012415 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 437 (464)
Q Consensus 358 ~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~ 437 (464)
+.+-++++-. -.+..-+=-|++-.|..|-..-..++-++- ++. +|.-..||-.-. ++-. +.-+|.++||++ .
T Consensus 104 ~q~vieqik~--i~g~~~FETy~SltC~nCPDVVQALN~msv-lNp-~I~H~~IdGa~F-q~Ev-ear~IMaVPtvf--l 175 (520)
T COG3634 104 DQDVIEQIKA--IDGDFHFETYFSLTCHNCPDVVQALNLMSV-LNP-RIKHTAIDGALF-QDEV-EARNIMAVPTVF--L 175 (520)
T ss_pred hHHHHHHHHh--cCCceeEEEEEEeeccCChHHHHHHHHHHh-cCC-CceeEEecchhh-HhHH-HhccceecceEE--E
Confidence 3344444432 246677778888899999988888876654 333 688889987766 4445 566899999976 4
Q ss_pred CCCCCeeecCCCCCCHHHHHHHHH
Q 012415 438 KHSSKPIKYPSERRDVDSLMAFVD 461 (464)
Q Consensus 438 ~g~~~~~~y~gg~~~~e~L~~fI~ 461 (464)
+|+ .|..|.++.++|..-|.
T Consensus 176 nGe----~fg~GRmtleeilaki~ 195 (520)
T COG3634 176 NGE----EFGQGRMTLEEILAKID 195 (520)
T ss_pred cch----hhcccceeHHHHHHHhc
Confidence 666 23334778888876654
No 390
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=31.10 E-value=1.6e+02 Score=25.44 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCC-eEEEEEeCC
Q 012415 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRP-FRVFSLDTG 146 (464)
Q Consensus 99 ~~~eil~~a~~~~~~~i~vafSGGKDS~ll-~L~~~~~~~-i~vv~~DTg 146 (464)
...+.+++..+-.++.++|+++..-|...| +.+.+.+.+ .+.-++||.
T Consensus 63 ~~~~v~~~l~~~l~~~~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~ 112 (156)
T cd06130 63 TFPEVWPEIKPFLGGSLVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTV 112 (156)
T ss_pred CHHHHHHHHHHHhCCCEEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHH
Confidence 445666666666666799999999998777 666665433 233456664
No 391
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=30.42 E-value=1.4e+02 Score=29.85 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=60.5
Q ss_pred CeeecCcchHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcC-----
Q 012415 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKL----- 425 (464)
Q Consensus 353 ~v~~L~~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Id~d~~~~~l~~~~~----- 425 (464)
-|.++|=+|.+++.. .+.|.||+|+.+--....+ -.-..++.++.+ ..|.++..|+..- ..-. ..+
T Consensus 211 LVREiTFeN~EELtE---EGlPflILf~~kdD~~s~k--~F~~aI~ReL~~e~~~in~l~ADG~~f-~hpL-~HlgKs~~ 283 (375)
T KOG0912|consen 211 LVREITFENAEELTE---EGLPFLILFRKKDDKESEK--IFKNAIARELDDETLAINFLTADGKVF-KHPL-RHLGKSPD 283 (375)
T ss_pred hhhhhhhccHHHHhh---cCCceEEEEecCCcccHHH--HHHHHHHHHhhhhhhccceeecCccee-cchH-HHhCCCcc
Confidence 588889899999887 8999999999876443322 222355555554 2478888887665 2111 122
Q ss_pred -----CCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 426 -----QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 426 -----~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
-|.+|=.+++|+.++ -+-..| .|.+|+..|
T Consensus 284 DLPviaIDsF~Hmylfp~f~--di~~pG------kLkqFv~DL 318 (375)
T KOG0912|consen 284 DLPVIAIDSFRHMYLFPDFN--DINIPG------KLKQFVADL 318 (375)
T ss_pred cCcEEEeeccceeeecCchh--hhcCcc------HHHHHHHHH
Confidence 255666666777765 233333 688887654
No 392
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=30.21 E-value=3.5e+02 Score=27.88 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
.+.+++.+.. ++..-++.++||.....+-+.....+.=.|+.. ...|+.|+.+.+.....+|++++.+...
T Consensus 63 ~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 63 VTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 4555555443 343345678888876544222222332244432 3468889998888888999998877543
No 393
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=29.71 E-value=6.3e+02 Score=25.93 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=61.5
Q ss_pred CCeeecCcc-hHHHHHhhcCCCCcEEEEEecCC-ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012415 352 QNLVTLNRT-GMENLARLDHRQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 429 (464)
Q Consensus 352 ~~v~~L~~~-~f~~~i~~~~~~k~vlV~Fya~w-C~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~ 429 (464)
.+|..++.+ +++.+-. . ...+-||-|+.+- ..+- ..|+++|+.|.. -|.|..+ -+ +.++ ++++++
T Consensus 146 dPVeiIn~~~e~~~Fe~-i-ed~~klIGyFk~~~s~~y----k~FeeAAe~F~p-~IkFfAt---fd-~~vA-k~L~lK- 212 (383)
T PF01216_consen 146 DPVEIINNKHELKAFER-I-EDDIKLIGYFKSEDSEHY----KEFEEAAEHFQP-YIKFFAT---FD-KKVA-KKLGLK- 212 (383)
T ss_dssp SSEEEE-SHHHHHHHHH----SS-EEEEE-SSTTSHHH----HHHHHHHHHCTT-TSEEEEE----S-HHHH-HHHT-S-
T ss_pred cchhhhcChhhhhhhhh-c-ccceeEEEEeCCCCcHHH----HHHHHHHHhhcC-ceeEEEE---ec-chhh-hhcCcc-
Confidence 457666653 3333322 1 2357777777664 4443 356788999977 5776643 24 8899 899997
Q ss_pred CCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 430 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 430 ~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
.=.+-+|..=-..++..++.+.+.++|++||++-
T Consensus 213 ~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h 246 (383)
T PF01216_consen 213 LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEH 246 (383)
T ss_dssp TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT
T ss_pred ccceeeeccccCCCccCCCCCCCHHHHHHHHHHh
Confidence 7788888766555899888788999999999864
No 394
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.49 E-value=73 Score=29.04 Aligned_cols=36 Identities=11% Similarity=0.270 Sum_probs=26.2
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI 460 (464)
...+ .+.+|.++||+++ +|+ ....| ..+.+.|.+.|
T Consensus 165 ~~~a-~~~gv~G~Pt~vv--~g~---~~~~G-~~~~~~~~~~i 200 (201)
T cd03024 165 EARA-RQLGISGVPFFVF--NGK---YAVSG-AQPPEVFLQAL 200 (201)
T ss_pred HHHH-HHCCCCcCCEEEE--CCe---EeecC-CCCHHHHHHHh
Confidence 5566 7899999999987 454 23344 68888887765
No 395
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=28.91 E-value=3.2e+02 Score=28.09 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=45.9
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH
Q 012415 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA 179 (464)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~ 179 (464)
.+.+++.+.+ ++..-++.|++|.....+-+....++.=.|+.. ...|+.|..+++.+ ..+|+++..+.++...+.+
T Consensus 55 ~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~--~~~y~~~~~~~~~~-~~~g~~v~~~~~d~~~l~~ 131 (385)
T PRK08574 55 LRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLP--MEAYGTTLRLLKSL-EKFGVKVVLAYPSTEDIIE 131 (385)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEc--CCCchhHHHHHHHh-hccCcEEEEECCCHHHHHH
Confidence 4556655554 333345678888765433222223333344432 45788898888876 7789988877676555554
Q ss_pred HH
Q 012415 180 LV 181 (464)
Q Consensus 180 ~~ 181 (464)
.+
T Consensus 132 ~i 133 (385)
T PRK08574 132 AI 133 (385)
T ss_pred hc
Confidence 44
No 396
>PRK07050 cystathionine beta-lyase; Provisional
Probab=28.79 E-value=2.8e+02 Score=28.65 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 100 PLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 100 ~~eil~~a~~~~-~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
..+.++..+.++ +..-++.++||.....+-+..-.++.=.|+..+ ..|+.|+.+.+.+...+|+++..+.+.
T Consensus 66 t~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~ 138 (394)
T PRK07050 66 TSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPL 138 (394)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCC
Confidence 356666666554 444667888887764332211133433555544 457788998888899999998877543
No 397
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=28.77 E-value=87 Score=27.74 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.5
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCC
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
...+ .+++|.++||+++ +|+
T Consensus 133 ~~~~-~~~gi~gTPt~iI--nG~ 152 (178)
T cd03019 133 EKLA-KKYKITGVPAFVV--NGK 152 (178)
T ss_pred HHHH-HHcCCCCCCeEEE--CCE
Confidence 5667 7899999999987 565
No 398
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=28.45 E-value=3.4e+02 Score=26.44 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 012415 101 LEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 170 (464)
Q Consensus 101 ~eil~~a~~~~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~ 170 (464)
..+++.+.....+.+++++|. .+++-.++....+.+.|+-.++-..+. -..+++++. +.|+++.++
T Consensus 75 ~~~~~~A~~~i~~dvILT~s~--S~~v~~~l~~~~~~~~V~v~ESrP~~e-G~~~a~~L~-~~GI~vtli 140 (253)
T PRK06372 75 KMAIEHAKPLFNDSVIGTISS--SQVLKAFISSSEKIKSVYILESRPMLE-GIDMAKLLV-KSGIDVVLL 140 (253)
T ss_pred HHHHHHHHhhcCCCEEEEeCC--cHHHHHHHHhcCCCCEEEEecCCCchH-HHHHHHHHH-HCCCCEEEE
Confidence 456667777766668888882 345545554555546777666655544 467777776 468888765
No 399
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=28.24 E-value=3e+02 Score=27.52 Aligned_cols=86 Identities=17% Similarity=0.334 Sum_probs=49.9
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCC
Q 012415 361 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 361 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
.|+.+.. +.++.+|+|.+.--|- ...|.+.+.. .+.++++=-... +++.........|.+.+|++..
T Consensus 145 ~fehlq~---Rhq~ffVf~Gtge~PL----~d~fidAASe----~~~~a~FfSase--eVaPe~~~~kempaV~VFKDet 211 (468)
T KOG4277|consen 145 EFEHLQA---RHQPFFVFFGTGEGPL----FDAFIDAASE----KFSVARFFSASE--EVAPEENDAKEMPAVAVFKDET 211 (468)
T ss_pred HHHHHhh---ccCceEEEEeCCCCcH----HHHHHHHhhh----heeeeeeecccc--ccCCcccchhhccceEEEccce
Confidence 3444443 7889999888654332 2233333332 345554432222 3332344467789999999886
Q ss_pred CCeeecCCCCCCHHHHHHHHHHh
Q 012415 441 SKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 441 ~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
- .+...| +.+.|.+||++-
T Consensus 212 f-~i~de~---dd~dLseWinRE 230 (468)
T KOG4277|consen 212 F-EIEDEG---DDEDLSEWINRE 230 (468)
T ss_pred e-EEEecC---chhHHHHHHhHh
Confidence 2 344433 778899999764
No 400
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=26.93 E-value=2e+02 Score=23.24 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=27.1
Q ss_pred EecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH
Q 012415 379 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA 421 (464)
Q Consensus 379 Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~ 421 (464)
+|.+.+.--++....=..+..-+...+|.|-.+|++.+ ++..
T Consensus 4 vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d-~~~r 45 (92)
T cd03030 4 VYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN-EENR 45 (92)
T ss_pred EEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC-HHHH
Confidence 34444555666665555665566656799999999887 4433
No 401
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.68 E-value=3.5e+02 Score=28.50 Aligned_cols=71 Identities=17% Similarity=0.313 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 012415 99 SPLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 171 (464)
Q Consensus 99 ~~~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~ 171 (464)
...+.+++.+.. ++..-++.|+.|-....+-+.....+.-.|+..+ ..|..|+.++.....++|+++..+.
T Consensus 69 p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~--~~y~~t~~~~~~~l~~~Gi~v~~vd 140 (436)
T PRK07812 69 PTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSP--RLYGGTYNLFHYTLPKLGIEVSFVE 140 (436)
T ss_pred chHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeC--CcchHHHHHHHHHhhcCeEEEEEEC
Confidence 445677777766 4445678888776653332222233333555444 4779999988888888998887773
No 402
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=26.43 E-value=2.1e+02 Score=25.67 Aligned_cols=57 Identities=19% Similarity=0.151 Sum_probs=38.5
Q ss_pred CcEEEEechhHHHHH-HHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh---CCcEEEE
Q 012415 113 NDIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF---GIRIEYM 170 (464)
Q Consensus 113 ~~i~vafSGGKDS~l-l~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~---gl~i~~~ 170 (464)
..++|++|-|+-..- ++++.. +.++.++...+|.+=+.|.++=+++++.+ |.++..-
T Consensus 29 k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 29 KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 468899887765543 355443 25688889999988777777665555555 7676554
No 403
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=26.33 E-value=1.4e+02 Score=22.21 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=31.7
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEE
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 435 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~~~PTi~l 435 (464)
..|+.+.|++|.+..-.+.... .+-.+....+|.....+++. +......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~---~~i~~~~~~~~~~~~~~~~~-~~~p~~~vP~l~~ 56 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETG---LGDDVELVLVNPWSDDESLL-AVNPLGKIPALVL 56 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhC---CCCCcEEEEcCcccCChHHH-HhCCCCCCCEEEE
Confidence 3567888999998765555411 11124445555433324555 5555678997753
No 404
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=25.63 E-value=5.3e+02 Score=23.69 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=52.9
Q ss_pred HHH-HHHHHHHHcCCCeEEEEEeCCCCcHHHHHH----HHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCCcchhhh
Q 012415 123 EDV-ALIEYAHLTGRPFRVFSLDTGRLNPETYRF----FDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQEC 197 (464)
Q Consensus 123 KDS-~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~----~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~C 197 (464)
=|| ..+..++..+.++.++|.|..++..+=|.- ++++++.+|+++.+-.-+...|...+. |...-++.+ ..|
T Consensus 9 PCs~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~--~~e~epE~g-~RC 85 (176)
T PF02677_consen 9 PCSTYPLERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVK--GLEDEPEGG-KRC 85 (176)
T ss_pred cccHHHHHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHh--hCccCCccC-chh
Confidence 344 345666667889999999999886654433 566677778888775444444544443 333333332 345
Q ss_pred --hhccccchHHHHhc--cCcEE
Q 012415 198 --CRVRKVRPLRRALK--GLRAW 216 (464)
Q Consensus 198 --c~~~Kv~Pl~r~l~--~~~~~ 216 (464)
|....++-..+..+ |++.+
T Consensus 86 ~~Cy~~RL~~tA~~A~e~gfd~F 108 (176)
T PF02677_consen 86 RVCYDLRLEKTAQYAKELGFDYF 108 (176)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEE
Confidence 55555544444433 55533
No 405
>PLN02673 quinolinate synthetase A
Probab=25.36 E-value=1.7e+02 Score=32.59 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=17.0
Q ss_pred cChhhHHHHHHHhccC-CHHHHHHHHH
Q 012415 83 EGEEDFEQFAKELENA-SPLEIMDRAL 108 (464)
Q Consensus 83 ~~~~~~~~l~~~l~~~-~~~eil~~a~ 108 (464)
.....++.+-++++.. +.+++.+.++
T Consensus 80 ~lP~kl~eIveeF~~l~dWEeRYr~LI 106 (724)
T PLN02673 80 LVPCKLQRLIKEFKSLTEPVDRVKRLL 106 (724)
T ss_pred cCCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455677777777655 4467777766
No 406
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=25.28 E-value=1.1e+02 Score=25.94 Aligned_cols=75 Identities=16% Similarity=0.288 Sum_probs=44.3
Q ss_pred ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCC--CCCCCEEEEEeCCCCC---eeecCCC--CCCHHHH
Q 012415 384 CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ--LGSFPTILFFPKHSSK---PIKYPSE--RRDVDSL 456 (464)
Q Consensus 384 C~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~--I~~~PTi~lf~~g~~~---~~~y~gg--~~~~e~L 456 (464)
|++|..++-.+.-.-. +.. .+.+.+|+...--.++. ...+ =++.|++++=. |... .-.+.|- ..+.+.|
T Consensus 24 Cp~c~~iEGlLa~~P~-l~~-~ldV~rV~f~RPR~~vi-~llGE~~QslPvLVL~~-~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPD-LRE-RLDVRRVDFPRPRQAVI-ALLGEANQSLPVLVLAD-GAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred CCchHHHHhHHhhChh-hhh-cccEEEeCCCCchHHHH-HHhChhccCCCEEEeCC-CCCCcccccccCCeEEeCCHHHH
Confidence 9999998876653322 222 58899999887744444 4444 36899987653 3311 1112110 1366777
Q ss_pred HHHHHH
Q 012415 457 MAFVDA 462 (464)
Q Consensus 457 ~~fI~~ 462 (464)
..++.+
T Consensus 100 ~~~La~ 105 (112)
T PF11287_consen 100 LRYLAE 105 (112)
T ss_pred HHHHHH
Confidence 777654
No 407
>PRK05939 hypothetical protein; Provisional
Probab=24.90 E-value=4e+02 Score=27.53 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012415 98 ASPLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (464)
Q Consensus 98 ~~~~eil~~a~~~~-~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 172 (464)
....+.+++.+..+ +..-+++|+.|.....+-+....++.=.|+..+ ..|+.|..+.+. .+++|++++.+.+
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~--~~y~~t~~~~~~-l~~~G~~v~~v~~ 118 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQ--FLFGNTNSLFGT-LRGLGVEVTMVDA 118 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECC--CccccHHHHHHH-HHhcCCEEEEECC
Confidence 34566777766654 344677888665433222212234433555533 568999888866 4678999887754
No 408
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=24.63 E-value=3e+02 Score=20.67 Aligned_cols=52 Identities=12% Similarity=0.014 Sum_probs=32.6
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHcCCCCCCCEEE
Q 012415 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTIL 434 (464)
Q Consensus 377 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~---~~~~l~~~~~~I~~~PTi~ 434 (464)
..|+.+.|+.|+...-.++++ +-.+.+..+|... ..+++. +-.....+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-----gl~~e~~~v~~~~~~~~~~~~~-~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-----GLRCEEYDVSLPLSEHNEPWFM-RLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-----CCCCEEEEecCCcCccCCHHHH-HhCcCCCCCEEE
Confidence 567888999998877544443 2234556666532 114566 445567899985
No 409
>PRK05967 cystathionine beta-lyase; Provisional
Probab=24.60 E-value=4.9e+02 Score=27.01 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 99 SPLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 99 ~~~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
...+.|+..+.. .+..-++.++.|.....+-+.....+.=.|+..+. .|+.|+.++.++.+++|+++..+.+.
T Consensus 64 Pt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~--~Y~~~~~l~~~~l~~~Gi~v~~vd~~ 137 (395)
T PRK05967 64 PTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDS--VYYPTRHFCDTMLKRLGVEVEYYDPE 137 (395)
T ss_pred hHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccC--CcHHHHHHHHHHHHhcCeEEEEeCCC
Confidence 445666666644 22334556665654322212222344335555554 47789999999999999999888654
No 410
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=24.10 E-value=1.6e+02 Score=24.69 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=38.4
Q ss_pred HHHHcCC--cEEEEe-c-hh-HHHHHHHHHHH-cCCCeEEEEEeCCCC-------cHHHHHHHHHHHHHhCCcEEE
Q 012415 107 ALEKFGN--DIAIAF-S-GA-EDVALIEYAHL-TGRPFRVFSLDTGRL-------NPETYRFFDEVEKHFGIRIEY 169 (464)
Q Consensus 107 a~~~~~~--~i~vaf-S-GG-KDS~ll~L~~~-~~~~i~vv~~DTg~~-------fpeT~~~~~~~~~~~gl~i~~ 169 (464)
+++.|++ --+|+| + || -+.-+++++.+ ....+.+||+=|-.. -|.-.++.+.+++++|++|+.
T Consensus 29 ~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 29 AFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred ccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 4666763 235566 3 65 23333333333 244567888877543 377778888889999998764
No 411
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.90 E-value=5.8e+02 Score=26.75 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 99 SPLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 99 ~~~eil~~a~~~~-~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
...+.+++.+..+ +..-++++|+|-....+-+.....+.=.|+.. ...|+.|..++.....++|++++.+.+.
T Consensus 64 p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~--~~~y~~t~~~~~~~l~~~Gi~v~~vd~~ 137 (433)
T PRK08134 64 PTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVAS--SALYGGSHNLLHYTLRRFGIETTFVKPG 137 (433)
T ss_pred hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEe--CCccHHHHHHHHHHHhhCCeEEEEECCC
Confidence 4467777766653 33356788888775432111112232244443 4578899999988778899998888654
No 412
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=23.84 E-value=2.9e+02 Score=29.19 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=38.9
Q ss_pred CcEEEEechhHHHHHH-HHHHH------cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEE
Q 012415 113 NDIAIAFSGAEDVALI-EYAHL------TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEY 169 (464)
Q Consensus 113 ~~i~vafSGGKDS~ll-~L~~~------~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~ 169 (464)
.++-|..|||=||-|+ .++.+ .....++...-.|.+..--+...+++++.+|...+.
T Consensus 226 ~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle~SPDL~aarkVAd~igt~Hhe 289 (543)
T KOG0571|consen 226 VPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGLEDSPDLLAARKVADFIGTIHHE 289 (543)
T ss_pred CceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEecCCCChhHHHHHHHHHHhCCcceE
Confidence 3477889999998655 44433 122235556666877666677799999999986543
No 413
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=23.69 E-value=90 Score=31.25 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=33.4
Q ss_pred EEEEechhHHHHHH-HHHHHcC----------------CCe-EEEEEeCCCC-----cHHHHHHHHHHHHHhCCcEEEE
Q 012415 115 IAIAFSGAEDVALI-EYAHLTG----------------RPF-RVFSLDTGRL-----NPETYRFFDEVEKHFGIRIEYM 170 (464)
Q Consensus 115 i~vafSGGKDS~ll-~L~~~~~----------------~~i-~vv~~DTg~~-----fpeT~~~~~~~~~~~gl~i~~~ 170 (464)
+.|+|| |.++|| .|+.+.. ..| .++|+|-|.- |+-....++++++. ++.|++.
T Consensus 196 ~LiGFS--KGcvVLNqll~El~~~~~~~~~~~~~~~~l~~I~~~~wLD~Gh~g~~~~w~T~~~~L~~l~~~-~i~i~vH 271 (303)
T PF10561_consen 196 TLIGFS--KGCVVLNQLLYELHYLEELARVDKEIERFLSRISDMYWLDGGHNGGSNTWITDENVLKELAKL-GIRIHVH 271 (303)
T ss_pred EEEEec--CcchHHHHHHHHHHhhhcccCCchHHHHHHHhhheEEEeccCCCCCCCceecCHHHHHHHHhc-CcEEEEe
Confidence 678999 556766 5555432 113 5899999854 55444555555544 8888764
No 414
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=23.63 E-value=18 Score=26.79 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=7.8
Q ss_pred CccCcHHHHHHHHHhcCCCcchhhhcC
Q 012415 257 VANVKGNDIWNFLRTMDVPINSLHSQG 283 (464)
Q Consensus 257 I~dWt~~DVw~yi~~~~lp~npLy~~G 283 (464)
|+.|.+-+|-.+.++.++||.+|=+.|
T Consensus 23 LFEw~yP~lA~~cr~kg~pYP~Lde~G 49 (57)
T PF12105_consen 23 LFEWGYPVLAKWCRRKGLPYPPLDEDG 49 (57)
T ss_dssp HHHHHHHHH------------------
T ss_pred HHcccCHHHHhhccccccccccccccc
Confidence 578999999999999999999998776
No 415
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.52 E-value=3.8e+02 Score=28.09 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=45.8
Q ss_pred HHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012415 100 PLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (464)
Q Consensus 100 ~~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 172 (464)
..+.++..+.. .+..-++.+++|.....+-+.....+.=.|+..+ ..|+.|+.....+.+++|++++.+..
T Consensus 65 ~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 65 TTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred hHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcc--CchhhHHHHHHHHHHhCCEEEEEECC
Confidence 35666666554 3345677888888765443322233333455444 46888999999989999999887744
No 416
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=23.49 E-value=92 Score=26.22 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=23.4
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 416 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~ 416 (464)
+..|..|.|+.|++....+++- ++.|-.+|.-++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-------gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-------GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEeehhcC
Confidence 4568899999999887666542 455666665443
No 417
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=23.31 E-value=1e+02 Score=25.44 Aligned_cols=58 Identities=10% Similarity=0.199 Sum_probs=35.1
Q ss_pred EEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC--CCCEEEEE-eCCC
Q 012415 378 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--SFPTILFF-PKHS 440 (464)
Q Consensus 378 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~~~~l~~~~~~I~--~~PTi~lf-~~g~ 440 (464)
.||-.+|+.|......+.+... . ..+.|+-+.-... .++. +.+++. ..-+.++. .+|+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~--~-~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDR--G-GRLRFVDIQSEPD-QALL-ASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCC--C-CCEEEEECCChhh-hhHH-HhcCcCHHHHcCeeEEecCCC
Confidence 3789999999999888777611 1 2466655532333 3444 456654 45555554 5554
No 418
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=22.77 E-value=85 Score=24.68 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=18.7
Q ss_pred CCCEEEEEe-CCCCC-eeecCCCCCCHHHHHHHHHH
Q 012415 429 SFPTILFFP-KHSSK-PIKYPSERRDVDSLMAFVDA 462 (464)
Q Consensus 429 ~~PTi~lf~-~g~~~-~~~y~gg~~~~e~L~~fI~~ 462 (464)
.-|++++|+ +|+.. .+.. ...+.++|.+|+++
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i--~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINI--EKWKTDEIEEFLNE 74 (78)
T ss_dssp ---EEEEE-SSS--SEEEE---SSSSHCHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEc--ccCCHHHHHHHHHH
Confidence 459999997 44432 2333 36899999999975
No 419
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.45 E-value=5e+02 Score=27.22 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHcC-CcEEEEechhH-HHH--HHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 98 ASPLEIMDRALEKFG-NDIAIAFSGAE-DVA--LIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 98 ~~~~eil~~a~~~~~-~~i~vafSGGK-DS~--ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
.....+++..+.... ..-+++||.|. -+. +++|+ .....++-. +..|-.|+.+++++..++|+....+.+.
T Consensus 76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~---~~g~~iV~~--~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLL---PAGDHIVAT--GDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhc---CCCCcEEEe--CCCcccHHHHHHHHHHHhCceeeeechh
Confidence 456777777766543 33467777554 333 33444 222334433 4778999999999999999988777554
Q ss_pred h
Q 012415 174 A 174 (464)
Q Consensus 174 ~ 174 (464)
.
T Consensus 151 ~ 151 (409)
T KOG0053|consen 151 D 151 (409)
T ss_pred h
Confidence 3
No 420
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=22.26 E-value=4.4e+02 Score=27.27 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=44.5
Q ss_pred HHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012415 100 PLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (464)
Q Consensus 100 ~~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 172 (464)
..+.+++.+.. ++..-++.+++|.+...+-+..-..+.-.|+..+ ..|+.|+.+...+.+.+|++++.+..
T Consensus 71 ~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~--~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 71 TVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAAR--SLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred hHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEcc--CCcchHHHHHHHHHHHcCcEEEEECC
Confidence 35566666655 4444567888777764332211233333455443 36778999988888999999988754
No 421
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=21.92 E-value=5.1e+02 Score=26.45 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=41.9
Q ss_pred HHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012415 100 PLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (464)
Q Consensus 100 ~~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 172 (464)
..+.++..+.+ ++..-++.+++|.....+-+.....+.-.|+.. ...|+.|+.+...+.+.+|++++.+..
T Consensus 55 ~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 55 TVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQAGDHVVAS--RSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred hHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEe--cCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 34555555554 343345667777765433221122232345543 346788999888888999999877643
No 422
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=21.69 E-value=49 Score=33.24 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=20.6
Q ss_pred hhhhcCCcccCccCCCccCCCCCcccccc
Q 012415 278 SLHSQGYISIGCEPCTRPVLPGQHEREGR 306 (464)
Q Consensus 278 pLy~~Gy~siGC~~CT~~~~~g~~~r~GR 306 (464)
+++-.-|++.||.+|.+|.-...-++.||
T Consensus 279 ev~p~pf~t~gC~~cnRP~~n~~~e~p~r 307 (339)
T COG2516 279 EVPPSPFRTRGCPGCNRPYPNFMFELPGR 307 (339)
T ss_pred CCCccccccCCCCCCCCCCcchHhhccCC
Confidence 33333789999999999875433377777
No 423
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=21.63 E-value=1.5e+02 Score=27.45 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.4
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCC
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHS 440 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~ 440 (464)
...+ ++++|+++||+++ +|+
T Consensus 157 ~~~a-~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 157 EKAA-ADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHH-HHcCCCCCCEEEE--CCE
Confidence 4566 7899999999987 666
No 424
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.53 E-value=1.2e+02 Score=28.73 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=28.6
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 012415 418 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463 (464)
Q Consensus 418 ~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~~e~L~~fI~~l 463 (464)
..++ ++++|.+.||+++-.+ .+.| ..+.++|.+.|...
T Consensus 205 ~~~a-~~~gv~gTPt~~v~~~------~~~g-~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLA-QQLGVNGTPTFIVNGK------LVPG-LPDLDELKAIIDEA 242 (244)
T ss_pred HHHH-HhcCCCcCCeEEECCe------eecC-CCCHHHHHHHHHHh
Confidence 4567 7899999999976533 3444 67789999988765
No 425
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=21.41 E-value=3.4e+02 Score=25.29 Aligned_cols=104 Identities=12% Similarity=-0.015 Sum_probs=57.0
Q ss_pred EEechhHHH-------HHHHHHHHc-CCCeEEEEEeCCCC-cHHHHHHHHHHHHHh-CCcEEEEcCC-hHHHHHHHHhcC
Q 012415 117 IAFSGAEDV-------ALIEYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHF-GIRIEYMFPD-AVEVQALVRSKG 185 (464)
Q Consensus 117 vafSGGKDS-------~ll~L~~~~-~~~i~vv~~DTg~~-fpeT~~~~~~~~~~~-gl~i~~~~p~-~~~~~~~~~~~g 185 (464)
++.|||.|. .+-+++.+. +....+.|+-|.-. .++..+.+.+.-+++ |.++..+... ..+..+.+....
T Consensus 3 ~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad 82 (212)
T cd03146 3 LLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEAD 82 (212)
T ss_pred EEEeCCcccccccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCC
Confidence 567777663 333555554 45678999999865 456566666777788 8887765411 111122222222
Q ss_pred CCCCCCcchhhhhhccccchHHHHhccC---cEEEEee
Q 012415 186 LFSFYEDGHQECCRVRKVRPLRRALKGL---RAWITGQ 220 (464)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~---~~~itG~ 220 (464)
.-.++--+...+-..+|-.++.+.|+.. ...+.|+
T Consensus 83 ~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~ 120 (212)
T cd03146 83 VIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGW 120 (212)
T ss_pred EEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEE
Confidence 1112222344566666655666666532 3566665
No 426
>PRK06234 methionine gamma-lyase; Provisional
Probab=21.39 E-value=4.7e+02 Score=26.96 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=44.2
Q ss_pred HHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012415 100 PLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (464)
Q Consensus 100 ~~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 172 (464)
....+++++.. ++..-++.+++|.....+-+....++.-.|+..+ ..|+.|........+.+|++++.+..
T Consensus 65 ~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~ 136 (400)
T PRK06234 65 TSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASD--TLYGCTFALLNHGLTRYGVEVTFVDT 136 (400)
T ss_pred cHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEec--CccchHHHHHHHHHhhCCeEEEEECC
Confidence 34556665554 3444567888888754332222233333555444 45788888888888889998887754
No 427
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.24 E-value=3.6e+02 Score=21.62 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCcEEEEe--chhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc-CChHHH
Q 012415 101 LEIMDRALEKFGNDIAIAF--SGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF-PDAVEV 177 (464)
Q Consensus 101 ~eil~~a~~~~~~~i~vaf--SGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~-p~~~~~ 177 (464)
...++..++++|..+ +-+ -||...-.-.|-..+. ...+|.+=|++--..+...+++.++++++++.+.+ .....+
T Consensus 12 ~~~~~~~~~~~G~~~-~~hg~~~~~~~~~~~l~~~i~-~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 12 ERRYKRILEKYGGKL-IHHGRDGGDEKKASRLPSKIK-KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred HHHHHHHHHHcCCEE-EEEecCCCCccchhHHHHhcC-CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 466778888888643 344 1222212211222221 12334444566677788999999999999999886 444444
Q ss_pred HH
Q 012415 178 QA 179 (464)
Q Consensus 178 ~~ 179 (464)
..
T Consensus 90 ~~ 91 (97)
T PF10087_consen 90 ER 91 (97)
T ss_pred HH
Confidence 43
No 428
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=21.20 E-value=1.9e+02 Score=25.61 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=25.3
Q ss_pred EEEEechhHH------HHHHHHHHHcC---CCeEEEEEeCCCCcHHHHHHHHHHHH
Q 012415 115 IAIAFSGAED------VALIEYAHLTG---RPFRVFSLDTGRLNPETYRFFDEVEK 161 (464)
Q Consensus 115 i~vafSGGKD------S~ll~L~~~~~---~~i~vv~~DTg~~fpeT~~~~~~~~~ 161 (464)
..|+||||+= ..++.+++++. ++.. +++=||+.+.|-....+++.+
T Consensus 67 ~gvt~sGGEPl~~~~~~~l~~l~~~~k~~~~~~~-i~~~tGy~~eel~~~~~~~l~ 121 (154)
T PRK11121 67 QGLSLSGGDPLHPQNVPDILKLVQRVKAECPGKD-IWVWTGYKLDELNAAQRQVVD 121 (154)
T ss_pred CcEEEECCCccchhhHHHHHHHHHHHHHHCCCCC-EEEecCCCHHHHHHHHHHHHh
Confidence 3589999972 23345555421 1222 345599999875544333333
No 429
>PRK06434 cystathionine gamma-lyase; Validated
Probab=21.09 E-value=6.3e+02 Score=26.06 Aligned_cols=73 Identities=22% Similarity=0.401 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012415 99 SPLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (464)
Q Consensus 99 ~~~eil~~a~~~~-~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 173 (464)
...+.+++.+..+ +.+.+++|+.|.....+-+.....+.=.|+. +...|..|+.+......++|+++..+-.+
T Consensus 64 P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all~~GD~Vl~--~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~ 137 (384)
T PRK06434 64 PTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILS--ISDLYGQTFYFFNKVLKTLGIHVDYIDTD 137 (384)
T ss_pred hhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEE--ecCccchHHHHHHHHHHhcCcEEEEECCC
Confidence 4466777766654 4456788887775433212122333334444 34578889999989999999998887654
No 430
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=21.03 E-value=1.4e+02 Score=22.23 Aligned_cols=71 Identities=8% Similarity=0.041 Sum_probs=41.1
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHcCCCCCCCEEEEEeCCCCCeeecCCCCCC
Q 012415 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD 452 (464)
Q Consensus 376 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~---~~~~l~~~~~~I~~~PTi~lf~~g~~~~~~y~gg~~~ 452 (464)
+..|+.+.|+.|+...-.+.+..- .+.+..++... ...++. +......+|++. .+|. . - ..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i-----~~~~~~~~~~~~~~~~~~~~-~~~P~~~vP~l~--~~g~--~-l-----~e 65 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV-----DYELVPVDLTKGEHKSPEHL-ARNPFGQIPALE--DGDL--K-L-----FE 65 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC-----CcEEEEeCccccccCCHHHH-hhCCCCCCCEEE--ECCE--E-E-----Ec
Confidence 445667779999988766665422 24444555431 114555 566678899875 3332 1 1 23
Q ss_pred HHHHHHHHHH
Q 012415 453 VDSLMAFVDA 462 (464)
Q Consensus 453 ~e~L~~fI~~ 462 (464)
...|..||.+
T Consensus 66 s~aI~~yL~~ 75 (76)
T cd03053 66 SRAITRYLAE 75 (76)
T ss_pred HHHHHHHHhh
Confidence 4567777653
No 431
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.42 E-value=4.9e+02 Score=24.04 Aligned_cols=103 Identities=14% Similarity=0.232 Sum_probs=58.4
Q ss_pred hHHHHHhhcCCCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-----------------------
Q 012415 361 GMENLARLDHRQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------- 416 (464)
Q Consensus 361 ~f~~~i~~~~~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~----------------------- 416 (464)
.|+++-...-.++.|++.|| -++-=-|-...-.|.+.+.+|..-+-.++.+.+|..
T Consensus 22 ~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPl 101 (196)
T KOG0852|consen 22 EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPL 101 (196)
T ss_pred cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccce
Confidence 44444222235688888888 445444555555677777777654555555554432
Q ss_pred ----cHHHHHHcCCC----CCCCE--EEEE-eCCCCCeeecC--CCCCCHHHHHHHHHHhC
Q 012415 417 ----QKEYAKQKLQL----GSFPT--ILFF-PKHSSKPIKYP--SERRDVDSLMAFVDALR 464 (464)
Q Consensus 417 ----~~~l~~~~~~I----~~~PT--i~lf-~~g~~~~~~y~--gg~~~~e~L~~fI~~l~ 464 (464)
+.++| ++|+| .+++- ++++ ++|..+-+..+ .-.++.++....|+.+|
T Consensus 102 lsD~~~~Is-rdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 102 LSDLNHEIS-RDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQ 161 (196)
T ss_pred eeccchhhH-HhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHh
Confidence 16788 88987 34542 3333 45543222212 11389999988888764
No 432
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=20.30 E-value=3.5e+02 Score=25.61 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=45.8
Q ss_pred cCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHcCCC-----CCCCEEEE
Q 012415 381 APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQL-----GSFPTILF 435 (464)
Q Consensus 381 a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Id~d~~--------------------~~~l~~~~~~I-----~~~PTi~l 435 (464)
..-|+-|-.+...+.-....+...++.|+.|.-.-. +.++. ..|++ ...|.+-+
T Consensus 82 ~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~Fn-~D~~~~~~~~~~~~g~sv 160 (211)
T PF05988_consen 82 DEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDFN-YDFGVSFDEGGEMPGLSV 160 (211)
T ss_pred CCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCccc-ccccceeccCCCceeEEE
Confidence 456999999999996555666654688888864322 02333 45665 46777766
Q ss_pred E-eCCCCCeeecCCCCCCHHHH
Q 012415 436 F-PKHSSKPIKYPSERRDVDSL 456 (464)
Q Consensus 436 f-~~g~~~~~~y~gg~~~~e~L 456 (464)
| ++|..+...|....+-.+.|
T Consensus 161 F~Rdg~~VfhTyst~~RG~e~l 182 (211)
T PF05988_consen 161 FLRDGGRVFHTYSTYGRGGERL 182 (211)
T ss_pred EEEcCCEEEEEeecCCCCchhh
Confidence 6 56655455555433444433
No 433
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=20.29 E-value=80 Score=23.09 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=20.8
Q ss_pred cCcHHHHHHHHHhcCCC-cchhhhcCCcc
Q 012415 259 NVKGNDIWNFLRTMDVP-INSLHSQGYIS 286 (464)
Q Consensus 259 dWt~~DVw~yi~~~~lp-~npLy~~Gy~s 286 (464)
+|+.++|-+++...+++ |.+....|+.+
T Consensus 2 ~W~~~~V~~WL~~~~l~~y~~~F~~~~i~ 30 (64)
T PF00536_consen 2 EWSVEDVSEWLKSLGLEQYAENFEKNYID 30 (64)
T ss_dssp GTSHHHHHHHHHHTTGGGGHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHcCCch
Confidence 69999999999999985 44444445443
No 434
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=20.23 E-value=6e+02 Score=26.02 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=44.3
Q ss_pred HHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012415 100 PLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (464)
Q Consensus 100 ~~eil~~a~~~-~~~~i~vafSGGKDS~ll~L~~~~~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 172 (464)
..+.++..+.. .+..-+++++.|-+.+.+ ++....+.=.|+..+ ..|+.|+.+...+.+++|++++.+..
T Consensus 51 ~~~~Le~~la~l~g~~~al~~~SG~~Al~~-~l~~l~pGd~Vi~~~--~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 51 TRFALEELIADLEGGVKGFAFASGLAGIHA-VFSLFQSGDHVLLGD--DVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCHHHHHHH-HHHHcCCCCEEEEcC--CChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 35666666665 344456777766654322 222234434566554 35899999999999999998887644
No 435
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=20.23 E-value=3.6e+02 Score=25.15 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHcCCcEEEEec-hhHHHHHHHHHHHc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEE
Q 012415 99 SPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEY 169 (464)
Q Consensus 99 ~~~eil~~a~~~~~~~i~vafS-GGKDS~ll~L~~~~----~~~i~vv~~DTg~~fpeT~~~~~~~~~~~gl~i~~ 169 (464)
.|.++|+++++- +++.+|+|- -|-=..-++|+.+- ...+|.=|-||.....-|+.=.+.++++.|++|..
T Consensus 90 ~P~~vL~EmlRV-gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~ 164 (193)
T PF07021_consen 90 RPDEVLEEMLRV-GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEE 164 (193)
T ss_pred HHHHHHHHHHHh-cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEE
Confidence 488899998865 556889997 66656666666542 33467889999988888999999999999999854
Done!