RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012415
(464 letters)
>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase.
Length = 457
Score = 859 bits (2221), Expect = 0.0
Identities = 353/462 (76%), Positives = 406/462 (87%), Gaps = 9/462 (1%)
Query: 6 TSSNSISSSSFALTSSSNDIKVSQIGSFRLVDRAHVASTSLS---QRRSLVRPLNAEPKR 62
+SS++ISSS + + +S++ K QIGS RL+DR +++ + S +R S +PLNA+P
Sbjct: 2 SSSSAISSSGSSRSGASSESKAKQIGSLRLLDRGGLSARAYSLSGKRSSAAKPLNAQPAA 61
Query: 63 NDSVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGA 122
+++P AAT EV E+ EDFE+ AKELENASPLEIMD+ALEKFGNDIAIAFSGA
Sbjct: 62 RQAMIPSAATAV-AEVPEEEGEVEDFEKLAKELENASPLEIMDKALEKFGNDIAIAFSGA 120
Query: 123 EDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR 182
EDVALIEYAHLTGRPFRVFSLDTGRLNPETYR FD VEKH+GIRIEYMFPDAVEVQALVR
Sbjct: 121 EDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFPDAVEVQALVR 180
Query: 183 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFE 242
+KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTR+E+PVVQVDPVFE
Sbjct: 181 NKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFE 240
Query: 243 GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHE 302
GL+GG GSLVKWNP+ANV GN++WNFLRTMDVP+NSLH+QGY+SIGCEPCTRPVLPGQHE
Sbjct: 241 GLDGGPGSLVKWNPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHE 300
Query: 303 REGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGM 362
REGRWWWEDAKAKECGLHKGNIK+ED NG N + AVADIFNSQN+V L+R G+
Sbjct: 301 REGRWWWEDAKAKECGLHKGNIKEED-----NGAANDNGNAAVADIFNSQNVVALSRAGI 355
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 422
ENL +L++R+EPWLVVLYAPWC FCQAME SY ELA+KLAG+GVKV KFRADGDQKE+AK
Sbjct: 356 ENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAK 415
Query: 423 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 464
Q+LQLGSFPTIL FPK+SS+PIKYPSE+RDVDSL++FV++LR
Sbjct: 416 QELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSLR 457
>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase,
thioredoxin-independent. This enzyme, involved in the
assimilation of inorganic sulfate, is closely related to
the thioredoxin-dependent PAPS reductase of Bacteria
(CysH) and Saccharomyces cerevisiae. However, it has its
own C-terminal thioredoxin-like domain and is not
thioredoxin-dependent. Also, it has a substrate
preference for 5'-adenylylsulfate (APS) over
3'-phosphoadenylylsulfate (PAPS) so the pathway does not
require an APS kinase (CysC) to convert APS to PAPS.
Arabidopsis thaliana appears to have three isozymes, all
able to complement E. coli CysH mutants (even in
backgrounds lacking thioredoxin or APS kinase) but
likely localized to different compartments in
Arabidopsis [Central intermediary metabolism, Sulfur
metabolism].
Length = 463
Score = 836 bits (2160), Expect = 0.0
Identities = 379/469 (80%), Positives = 421/469 (89%), Gaps = 11/469 (2%)
Query: 1 MALAVTSSNS-ISSSSFALTSSSNDIKVSQIGSFRLVDRAHVASTS--LSQRRSLVRPLN 57
MALAVTSS++ IS S + + S + K +QIGSFRL+DR H S S LS+RR V+PLN
Sbjct: 1 MALAVTSSSTAISGISLSRSGESTEAKAAQIGSFRLLDRPHTISPSVNLSRRRLSVKPLN 60
Query: 58 AEPKRNDSVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAI 117
AEPKRN+S+VP AAT PEV EKV EDFE+ AK+LENASPLEIMD+ALEKFGNDIAI
Sbjct: 61 AEPKRNESIVPSAATTVAPEVEEKVVEVEDFEKLAKKLENASPLEIMDKALEKFGNDIAI 120
Query: 118 AFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 177
AFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD VEK +GIRIEYMFPDAVEV
Sbjct: 121 AFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMFPDAVEV 180
Query: 178 QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQV 237
QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKDQSPGTRSEIPVVQV
Sbjct: 181 QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQV 240
Query: 238 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 297
DPVFEGL+GGVGSLVKWNPVANV+G D+WNFLRTMDVP+N+LH+QGY+SIGCEPCTRPVL
Sbjct: 241 DPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVL 300
Query: 298 PGQHEREGRWWWEDAKAKECGLHKGNIKQE--DAAVNGNGNGAGNASEAVADIFNSQNLV 355
PGQHEREGRWWWEDAKAKECGLHKGNIK+E D AVNGNG S+AVADIF+S N+V
Sbjct: 301 PGQHEREGRWWWEDAKAKECGLHKGNIKEETLDGAVNGNG------SDAVADIFDSNNVV 354
Query: 356 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 415
+L+R G+ENL +L+ R+E WLVVLYAPWC FCQAME SY+ELA+KLAG+GVKV KFRADG
Sbjct: 355 SLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG 414
Query: 416 DQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 464
DQKE+AKQ+LQLGSFPTILFFPKHSS+PIKYPSE+RDVDSLM+FV+ LR
Sbjct: 415 DQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLLR 463
>gnl|CDD|234997 PRK02090, PRK02090, phosphoadenosine phosphosulfate reductase;
Provisional.
Length = 241
Score = 286 bits (735), Expect = 3e-95
Identities = 110/254 (43%), Positives = 142/254 (55%), Gaps = 14/254 (5%)
Query: 73 LATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYA 131
L K + D + ELE AS E + ALE FG +A+ S GAED L+
Sbjct: 1 LNALNALPKADLALDLAELNAELEGASAQERLAWALENFGGRLALVSSFGAEDAVLLHLV 60
Query: 132 HLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 191
V LDTG L PETYRF DE+ + + ++ PDA + R GL+
Sbjct: 61 AQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPDASAAEQEARYGGLWEQSV 120
Query: 192 DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251
+ ECCR+RKV PL RAL GL AWITG R++QS TR+ +PV+++D G
Sbjct: 121 EDRDECCRIRKVEPLNRALAGLDAWITGLRREQSG-TRANLPVLEID----------GGR 169
Query: 252 VKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWED 311
K NP+A+ D+W +L+ D+P + L QGY SIGCEPCTRPV PG+ ER GR WW
Sbjct: 170 FKINPLADWTNEDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGR-WWGG 228
Query: 312 AKAKECGLHKGNIK 325
K KECGLH+GN+
Sbjct: 229 LK-KECGLHEGNLP 241
>gnl|CDD|233701 TIGR02055, APS_reductase, thioredoxin-dependent adenylylsulfate APS
reductase. This model describes recently identified
adenosine 5'-phosphosulfate (APS) reductase activity
found in sulfate-assimilatory prokaryotes, thus
separating it from the traditionally described
phosphoadenosine 5'-phosphosulfate (PAPS) reductases
found in bacteria and fungi. Homologous to PAPS
reductase in enterobacteria, cyanobacteria, and yeast,
APS reductase here clusters with, and demonstrates
greater homology to plant APS reductase. Additionally,
the presence of two conserved C-terminal motifs
(CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate
specificity and serves as a FeS cluster [Central
intermediary metabolism, Sulfur metabolism].
Length = 191
Score = 251 bits (643), Expect = 3e-82
Identities = 95/200 (47%), Positives = 125/200 (62%), Gaps = 9/200 (4%)
Query: 120 SGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA 179
GAEDV L++ A +VF LDTGRL ETY D+V + + I I+ + P + V+
Sbjct: 1 LGAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEE 60
Query: 180 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDP 239
V+ GL FY ECC +RKV PL+RAL G+ AWITG R+DQSP TR++ P +++D
Sbjct: 61 QVKEYGLNLFYRSVPHECCGIRKVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEID- 118
Query: 240 VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPG 299
LVK NP+A+ D+W ++ ++P N LH +GY SIGCEPCTRPV PG
Sbjct: 119 -------EAFGLVKINPLADWTSEDVWEYIADNELPYNPLHDRGYPSIGCEPCTRPVAPG 171
Query: 300 QHEREGRWWWEDAKAKECGL 319
+ R GRWWWE+A KECGL
Sbjct: 172 EDPRAGRWWWEEAAKKECGL 191
>gnl|CDD|223253 COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 261
Score = 216 bits (552), Expect = 1e-67
Identities = 92/248 (37%), Positives = 132/248 (53%), Gaps = 14/248 (5%)
Query: 80 EKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPF 138
K E+ +LE SP+EI+ A E+F N + ++FS G + L+ A F
Sbjct: 7 TKDRMSENLASLLDKLEAESPIEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDF 66
Query: 139 RVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECC 198
V LDTG PETY F D + + +G+ ++ PD + G + + CC
Sbjct: 67 PVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRPDDEVAEG--EKYGGKLWEPSVERWCC 124
Query: 199 RVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256
+RKV PL+RAL AW TG R+D+SP TR+++PVV D F ++ NP
Sbjct: 125 DIRKVEPLKRALDEYGFDAWFTGLRRDESP-TRAKLPVVSFDSEFGES-------IRVNP 176
Query: 257 VANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWEDAKAK 315
+A+ D+W ++ ++P N L+ QGY SIGC PCTRPV P + ER GRW E A+
Sbjct: 177 LADWTELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKT 236
Query: 316 ECGLHKGN 323
ECGLH+ +
Sbjct: 237 ECGLHRAD 244
>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS)
reductase subfamily; composed of plant-type APS
reductases containing a C-terminal redox active TRX
domain and an N-terminal reductase domain which is part
of a superfamily that includes N type ATP PPases. APS
reductase catalyzes the reduction of activated sulfate
to sulfite, a key step in the biosynthesis of
sulfur-containing metabolites. Sulfate is first
activated by ATP sulfurylase, forming APS, which can be
phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate
(PAPS). Depending on the organism, either APS or PAPS
can be used for sulfate reduction. Prokaryotes and fungi
use PAPS, whereas plants use both APS and PAPS. Since
plant-type APS reductase uses glutathione (GSH) as its
electron donor, the C-terminal domain may function like
glutaredoxin, a GSH-dependent member of the TRX
superfamily. The flow of reducing equivalents goes from
GSH -> C-terminal TRX domain -> N-terminal reductase
domain -> APS. Plant-type APS reductase shows no
homology to that of dissimilatory sulfate-reducing
bacteria, which is an iron-sulfur flavoenzyme. Also
included in the alignment is EYE2 from Chlamydomonas
reinhardtii, a protein required for eyespot assembly.
Length = 109
Score = 189 bits (483), Expect = 2e-59
Identities = 73/108 (67%), Positives = 90/108 (83%)
Query: 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 412
+VTL+R +E LA+ + R + LVVLYAPWC FCQAME SY ELA+KLAG+ VKV KF
Sbjct: 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFN 61
Query: 413 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460
ADG+Q+E+AK++LQL SFPTILFFPK+S +PIKYPSE+RDVDSL+ FV
Sbjct: 62 ADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109
>gnl|CDD|201832 pfam01507, PAPS_reduct, Phosphoadenosine phosphosulfate reductase
family. This domain is found in phosphoadenosine
phosphosulfate (PAPS) reductase enzymes or PAPS
sulfotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP). It is also
found in NodP nodulation protein P from Rhizobium which
has ATP sulfurylase activity (sulfate adenylate
transferase).
Length = 173
Score = 192 bits (489), Expect = 2e-59
Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 15/184 (8%)
Query: 115 IAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173
+ ++FS G + + L+ A P V +DTG PETY F DE+E+ +G+ ++ P+
Sbjct: 2 LVVSFSGGKDSLVLLHLASKAFPPGPVIFIDTGYEFPETYEFVDELEEKYGLNLKVYLPE 61
Query: 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSE 231
+ + S Y + CCR+RKV PL+RALK G AW TG R+D+SP +R++
Sbjct: 62 DSFAEGINPEGIPSSLY----RRCCRLRKVEPLKRALKELGFDAWFTGLRRDESP-SRAK 116
Query: 232 IPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEP 291
+P+V +D F + +K P+ N D+W ++ +VP N L+ QGY SIGC P
Sbjct: 117 LPIVSIDGDFPKV-------IKVFPLLNWTETDVWQYILANNVPYNPLYDQGYRSIGCYP 169
Query: 292 CTRP 295
CT P
Sbjct: 170 CTGP 173
>gnl|CDD|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly modified
version of the P loop, the fingerprint peptide of
mononucleotide-binding proteins, is present in the
active site of the protein, which appears to be a
positively charged cleft containing a number of
conserved arginine and lysine residues. Although PAPS
reductase has no ATPase activity, it shows a striking
similarity to the structure of the ATP pyrophosphatase
(ATP PPase) domain of GMP synthetase, indicating that
both enzyme families have evolved from a common
ancestral nucleotide-binding fold. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP) . It is also
found in NodP nodulation protein P from Rhizobium
meliloti which has ATP sulphurylase activity (sulphate
adenylate transferase) .
Length = 173
Score = 172 bits (439), Expect = 4e-52
Identities = 62/181 (34%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 114 DIAIAFS-GAEDVALIEYAHLTGR---PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEY 169
++ ++FS G + L+ A P V LDTG PETY F D V + +G+ +
Sbjct: 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVV 60
Query: 170 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPG 227
+ P + L F + CCR+ KV PLRRALK L AWITG R+D+S
Sbjct: 61 VRPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120
Query: 228 TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI 287
V D G G ++K NP+ + D+W +L +P N L+ QGY SI
Sbjct: 121 RALLPVVWTDD--------GKGGILKVNPLLDWTYEDVWAYLARHGLPYNPLYDQGYRSI 172
Query: 288 G 288
G
Sbjct: 173 G 173
>gnl|CDD|129526 TIGR00434, cysH, phosophoadenylyl-sulfate reductase (thioredoxin).
This enzyme, involved in the assimilation of inorganic
sulfate, is designated cysH in Bacteria and MET16 in
Saccharomyces cerevisiae. Synonyms include
phosphoadenosine phosphosulfate reductase, PAPS
reductase, and PAPS reductase, thioredoxin-dependent. In
a reaction requiring reduced thioredoxin and NADPH, it
converts 3(prime)-phosphoadenylylsulfate (PAPS) to
sulfite and adenosine 3(prime),5(prime) diphosphate
(PAP). A related family of plant enzymes, scoring below
the trusted cutoff, differs in having a thioredoxin-like
C-terminal domain, not requiring thioredoxin, and in
having a preference for 5(prime)-adenylylsulfate (APS)
over PAPS [Central intermediary metabolism, Sulfur
metabolism].
Length = 212
Score = 154 bits (392), Expect = 1e-44
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 100 PLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDE 158
EI+ A FG + + S G + L++ V LDTG PETY DE
Sbjct: 1 AQEIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDE 60
Query: 159 VEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAW 216
+ + + + I+ PD A +K +E + +RKV P+ RALK L AW
Sbjct: 61 LTERYPLNIKVYKPD--LSLAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAW 118
Query: 217 ITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI 276
TG R+DQ P +R+ + ++ +D F ++K P+ + D++ ++ ++P
Sbjct: 119 FTGLRRDQGP-SRANLSILNIDEKFG--------ILKVLPLIDWTWKDVYQYIDAHNLPY 169
Query: 277 NSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK-ECGLH 320
N LH QGY SIG TRPV G+ ER GRW KAK ECGLH
Sbjct: 170 NPLHDQGYPSIGDYHSTRPVKEGEDERAGRW---KGKAKTECGLH 211
>gnl|CDD|131112 TIGR02057, PAPS_reductase, phosphoadenosine phosphosulfate
reductase, thioredoxin dependent. Requiring thioredoxin
as an electron donor, phosphoadenosine phosphosulfate
reductase catalyzes the reduction of
3'-phosphoadenylylsulfate (PAPS) to sulfite and
phospho-adenosine-phosphate (PAP). Found in
enterobacteria, cyanobacteria, and yeast, PAPS reductase
is related to a group of plant (TIGR00424) and bacterial
(TIGR02055) enzymes preferring 5'-adenylylsulfate (APS)
over PAPS as a substrate for reduction to sulfite
[Central intermediary metabolism, Sulfur metabolism].
Length = 226
Score = 137 bits (347), Expect = 6e-38
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 19/233 (8%)
Query: 94 ELENASPLEIMDRALEKFGNDIAI--AFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPE 151
+LE +P EI+ ++ F + + AF V L + ++ V +DT P+
Sbjct: 7 QLEKLTPQEIIAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQ 66
Query: 152 TYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECC-RVRKVRPLRRAL 210
T DE+ K + + D E +A +K E + KV P++RAL
Sbjct: 67 TLTLKDELTKKYYQTLNLYKYDGCESEADFEAK-YGKLLWQKDIEKYDYIAKVEPMQRAL 125
Query: 211 KGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNF 268
K L AW TG+R+DQ R+ +PV+++D ++K NP+ + ++ +
Sbjct: 126 KELNASAWFTGRRRDQG-SARANLPVIEID--------EQNGILKVNPLIDWTFEQVYQY 176
Query: 269 LRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK-ECGLH 320
L +VP N L QGY SIG TR V G+ ER GRW K K ECG+H
Sbjct: 177 LDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK---GKLKTECGIH 226
>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family,
redox active TRX domains; composed of eukaryotic
proteins involved in oxidative protein folding in the
endoplasmic reticulum (ER) by acting as catalysts and
folding assistants. Members of this family include PDI
and PDI-related proteins like ERp72, ERp57 (or ERp60),
ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI,
ERp57, ERp72, P5, PDIR and ERp46 are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins usually contain multiple copies of a redox
active TRX (a) domain containing a CXXC motif, and may
also contain one or more redox inactive TRX-like (b)
domains. Only one a domain is required for the oxidase
function but multiple copies are necessary for the
isomerase function. The different types of PDIs may show
different substrate specificities and tissue-specific
expression, or may be induced by stress. PDIs are in
their reduced form at steady state and are oxidized to
the active form by Ero1, which is localized in the ER
through ERp44. Some members of this family also contain
a DnaJ domain in addition to the redox active a domains;
examples are ERdj5 and Pfj2. Also included in the family
is the redox inactive N-terminal TRX-like domain of
ERp29.
Length = 101
Score = 87.7 bits (218), Expect = 4e-21
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRA 413
V L +N L + LV YAPWC C+A+ Y +LA +L G+G V V K
Sbjct: 1 VELTD---DNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDC 57
Query: 414 DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460
+ ++ ++ +PTI FP S +P+KY R ++SL+ F+
Sbjct: 58 TANNDLCSEYGVR--GYPTIKLFPNGSKEPVKYEGP-RTLESLVEFI 101
>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38
(ERp38) subfamily; composed of proteins similar to the
P5-like protein first isolated from alfalfa, which
contains two redox active TRX (a) domains at the
N-terminus, like human P5, and a C-terminal domain with
homology to the C-terminal domain of ERp29, unlike human
P5. The cDNA clone of this protein (named G1) was
isolated from an alfalfa cDNA library by screening with
human protein disulfide isomerase (PDI) cDNA. The G1
protein is constitutively expressed in all major organs
of the plant and its expression is induced by treatment
with tunicamycin, indicating that it may be a
glucose-regulated protein. The G1 homolog in the
eukaryotic social amoeba Dictyostelium discoideum is
also described as a P5-like protein, which is located in
the endoplasmic reticulum (ER) despite the absence of an
ER-retrieval signal. G1 homologs from Aspergillus niger
and Neurospora crassa have also been characterized, and
are named TIGA and ERp38, respectively. Also included in
the alignment is an atypical PDI from Leishmania
donovani containing a single a domain, and the
C-terminal a domain of a P5-like protein from Entamoeba
histolytica.
Length = 105
Score = 78.4 bits (194), Expect = 8e-18
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434
LV YAPWC C+ + Y +LA A + V + K AD K+ AK K + FPT+
Sbjct: 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAK-KYGVSGFPTLK 80
Query: 435 FFPKHSSKPIKYPSERRDVDSLMAFV 460
FFPK S++P+KY RD++ L+ FV
Sbjct: 81 FFPKGSTEPVKY-EGGRDLEDLVKFV 105
>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily;
ERdj5, also known as JPDI and macrothioredoxin, is a
protein containing an N-terminal DnaJ domain and four
redox active TRX domains. This subfamily is composed of
the three TRX domains located at the C-terminal half of
the protein. ERdj5 is a ubiquitous protein localized in
the endoplasmic reticulum (ER) and is abundant in
secretory cells. It's transcription is induced during ER
stress. It interacts with BiP through its DnaJ domain in
an ATP-dependent manner. BiP, an ER-resident member of
the Hsp70 chaperone family, functions in ER-associated
degradation and protein translocation. Also included in
the alignment is the single complete TRX domain of an
uncharacterized protein from Tetraodon nigroviridis,
which also contains a DnaJ domain at its N-terminus.
Length = 104
Score = 72.3 bits (178), Expect = 9e-16
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA 413
++TL L +R+EPWLV YAPWC CQA+ + A L G VKVG
Sbjct: 3 VITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSV-- 57
Query: 414 DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460
D + E Q+ + ++PTI +P ++SK Y RD DS++ F+
Sbjct: 58 DCQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104
>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a')
subfamily; composed of the C-terminal redox active a'
domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI,
ERp72 and ERp57 are endoplasmic reticulum (ER)-resident
eukaryotic proteins involved in oxidative protein
folding. They are oxidases, catalyzing the formation of
disulfide bonds of newly synthesized polypeptides in the
ER. They also exhibit reductase activity in acting as
isomerases to correct any non-native disulfide bonds, as
well as chaperone activity to prevent protein
aggregation and facilitate the folding of newly
synthesized proteins. PDI and ERp57 have the abb'a'
domain structure (where a and a' are redox active TRX
domains while b and b' are redox inactive TRX-like
domains). PDI also contains an acidic region (c domain)
after the a' domain that is absent in ERp57. ERp72 has
an additional a domain at the N-terminus (a"abb'a'
domain structure). ERp57 interacts with the lectin
chaperones, calnexin and calreticulin, and specifically
promotes the oxidative folding of glycoproteins, while
PDI shows a wider substrate specificity. ERp72
associates with several ER chaperones and folding
factors to form complexes in the ER that bind nascent
proteins. EFP1 is a binding partner protein of thyroid
oxidase, which is responsible for the generation of
hydrogen peroxide, a crucial substrate of
thyroperoxidase, which functions to iodinate
thyroglobulin and synthesize thyroid hormones.
Length = 104
Score = 71.8 bits (177), Expect = 2e-15
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434
LV YAPWC C+A+ Y ELA+KL G + V + K D + + + G FPTIL
Sbjct: 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKM--DATANDVPSEFVVDG-FPTIL 78
Query: 435 FFPK-HSSKPIKYPSERRDVDSLMAFV 460
FFP S PIKY + R ++ L+ F+
Sbjct: 79 FFPAGDKSNPIKYEGD-RTLEDLIKFI 104
>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain. This model
describes a domain of eukaryotic protein disulfide
isomerases, generally found in two copies. The high
cutoff for total score reflects the expectation of
finding both copies. The domain is similar to
thioredoxin but the redox-active disulfide region motif
is APWCGHCK [Protein fate, Protein folding and
stabilization].
Length = 102
Score = 69.6 bits (171), Expect = 9e-15
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 373 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSFP 431
+ LV YAPWC C+ + Y +LA +L + + + K A ++ ++ + FP
Sbjct: 14 KDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKDLASRFGVS--GFP 71
Query: 432 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
TI FFPK KP+ Y RD+++++ FV+
Sbjct: 72 TIKFFPK-GKKPVDYEGG-RDLEAIVEFVN 99
>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic.
This model represents eukaryotic protein disulfide
isomerases retained in the endoplasmic reticulum (ER)
and closely related forms. Some members have been
assigned alternative or additional functions such as
prolyl 4-hydroxylase and
dolichyl-diphosphooligosaccharide-protein
glycotransferase. Members of this family have at least
two protein-disulfide domains, each similar to
thioredoxin but with the redox-active disulfide in the
motif PWCGHCK, and an ER retention signal at the extreme
C-terminus (KDEL, HDEL, and similar motifs).
Length = 462
Score = 68.9 bits (169), Expect = 2e-12
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 435
LV YAPWC C+ + Y ELA+K V + D + +++ FPTI F
Sbjct: 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVE--GFPTIKF 425
Query: 436 FPKHS-SKPIKYPSERRDVDSLMAFVD 461
P S+P+ Y + R ++ F+
Sbjct: 426 VPAGKKSEPVPYDGD-RTLEDFSKFIA 451
Score = 46.6 bits (111), Expect = 2e-05
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGSFPTI 433
LV YAPWC C+++ Y + AD+L G +K+ K A ++K+ A QK + +PT+
Sbjct: 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT-EEKDLA-QKYGVSGYPTL 79
Query: 434 LFFPKHSSKPIKY 446
F Y
Sbjct: 80 KIFRNGEDSVSDY 92
>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide bond.
Some members with only the active site are not separated
from the noise.
Length = 104
Score = 61.9 bits (151), Expect = 5e-12
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 373 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432
+P LV YAPWC C+A+ Y +LA + + VK K AD + + A + + FPT
Sbjct: 19 KPVLVDFYAPWCGPCKALAPEYEKLAQEYKDD-VKFAKVDAD-ENPDLASE-YGVRGFPT 75
Query: 433 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463
I FF K Y R D L+AF+
Sbjct: 76 IKFFKN-GKKVSDY-VGARTKDDLVAFIKKH 104
>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of
eukaryotic proteins similar to human P5, a PDI-related
protein with a domain structure of aa'b (where a and a'
are redox active TRX domains and b is a redox inactive
TRX-like domain). Like PDI, P5 is located in the
endoplasmic reticulum (ER) and displays both isomerase
and chaperone activities, which are independent of each
other. Compared to PDI, the isomerase and chaperone
activities of P5 are lower. The first cysteine in the
CXXC motif of both redox active domains in P5 is
necessary for isomerase activity. The P5 gene was first
isolated as an amplified gene from a
hydroxyurea-resistant hamster cell line. The zebrafish
P5 homolog has been implicated to play a critical role
in establishing left/right asymmetries in the embryonic
midline. Some members of this subfamily are P5-like
proteins containing only one redox active TRX domain.
Length = 103
Score = 61.1 bits (149), Expect = 8e-12
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431
+ WLV YAPWC C+ + + + A L G VKVG AD Q + ++ FP
Sbjct: 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADVHQSLAQQYGVR--GFP 74
Query: 432 TILFFPKHSSKPIKYPSERRDVDSLMAFV 460
TI F + P Y R ++++
Sbjct: 75 TIKVFGAGKNSPQDYQGG-RTAKAIVSAA 102
>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional.
Length = 477
Score = 61.7 bits (150), Expect = 3e-10
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSFPTIL 434
L+ +YAPWC C+ +E Y EL +K N + V K +G E ++ +FPTIL
Sbjct: 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKM--NGTANETPLEEFSWSAFPTIL 436
Query: 435 FFPKHSSKPIKYPSERRDVDSLMAFV 460
F PI Y E R V+ FV
Sbjct: 437 FVKAGERTPIPYEGE-RTVEGFKEFV 461
Score = 49.7 bits (119), Expect = 2e-06
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLA--GNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 433
LV YAPWC C+ + Y + A L + + + A + E A Q+ + +PTI
Sbjct: 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-ELA-QEFGVRGYPTI 110
Query: 434 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463
FF K P+ Y R D +++++ L
Sbjct: 111 KFFNK--GNPVNYSGG-RTADGIVSWIKKL 137
>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein;
Provisional.
Length = 224
Score = 52.3 bits (125), Expect = 9e-08
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 338 AGNASEAVADIFNSQNLVTLNRTGMENL--ARLDHRQEPWLVVLYAPWCQFCQAMEGSYV 395
A A+ D ++ LV LN E L A PW V YAPWC C+ M ++
Sbjct: 16 ADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWE 75
Query: 396 ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 455
LA L G +V D + ++ + +PT+L F K +Y R +
Sbjct: 76 RLAKALKG---QVNVADLDATRALNLAKRFAIKGYPTLLLF--DKGKMYQYEGGDRSTEK 130
Query: 456 LMAF 459
L AF
Sbjct: 131 LAAF 134
>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46
(ERp46) subfamily; ERp46 is an ER-resident protein
containing three redox active TRX domains. Yeast
complementation studies show that ERp46 can substitute
for protein disulfide isomerase (PDI) function in vivo.
It has been detected in many tissues, however,
transcript and protein levels do not correlate in all
tissues, suggesting regulation at a posttranscriptional
level. An identical protein, named endoPDI, has been
identified as an endothelial PDI that is highly
expressed in the endothelium of tumors and hypoxic
lesions. It has a protective effect on cells exposed to
hypoxia.
Length = 102
Score = 49.6 bits (119), Expect = 1e-07
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKL--AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 433
V +APWC C+ + ++ +LA K VK+ K D Q + Q+ +PT+
Sbjct: 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAK--VDCTQHRELCSEFQVRGYPTL 77
Query: 434 LFFPKHSSKPIKYPSERRDVDSLMAFV 460
L F K K KY RD+DSL FV
Sbjct: 78 LLF-KDGEKVDKY-KGTRDLDSLKEFV 102
>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of
eukaryotic proteins similar to human TMX3, a TRX related
transmembrane protein containing one redox active TRX
domain at the N-terminus and a classical ER retrieval
sequence for type I transmembrane proteins at the
C-terminus. The TMX3 transcript is found in a variety of
tissues with the highest levels detected in skeletal
muscle and the heart. In vitro, TMX3 showed oxidase
activity albeit slightly lower than that of protein
disulfide isomerase.
Length = 104
Score = 48.6 bits (116), Expect = 2e-07
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 368 LDHRQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQK 424
D R+E WLV YAPWC C+ +E + E+ +L +G V+VGK D +
Sbjct: 10 KDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKL--DATAYSSIASE 67
Query: 425 LQLGSFPTILFF 436
+ +PTI
Sbjct: 68 FGVRGYPTIKLL 79
>gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional.
Length = 636
Score = 52.7 bits (127), Expect = 3e-07
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 35/198 (17%)
Query: 109 EKFGNDIAIAFSGAED--VALIEYAHLT---GRPFRVFSLDTGRLNPETYRFFDEVEKHF 163
EK+ ++++FSG +D V L L + F+ F +TG PET EV + +
Sbjct: 240 EKYNLPVSVSFSGGKDSLVVL----DLAREALKDFKAFFNNTGLEFPETVENVKEVAEEY 295
Query: 164 GIRIEYM-----FPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAW 216
GI + F AVE F ++ CC+V K+ P+ RA+K +
Sbjct: 296 GIELIEADAGDAFWRAVEK---------FGPPARDYRWCCKVCKLGPITRAIKENFPKGC 346
Query: 217 IT--GQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDV 274
+T GQRK +S +R++ P V +P V + + +P+ + ++W ++ +
Sbjct: 347 LTFVGQRKYES-FSRAKSPRVWRNPW-------VPNQIGASPIQDWTALEVWLYIFWRKL 398
Query: 275 PINSLHSQGYISIGCEPC 292
P N L+ +G+ IGC C
Sbjct: 399 PYNPLYERGFDRIGCWLC 416
>gnl|CDD|237509 PRK13794, PRK13794, hypothetical protein; Provisional.
Length = 479
Score = 50.4 bits (121), Expect = 1e-06
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 49/238 (20%)
Query: 79 AEKVEGEEDFEQFAKELENASPLEIMDRA--------LEKFGNDIAIAFSGAED--VALI 128
+E GEE ++ + N + L+ +R EK + +A+SG +D L+
Sbjct: 208 SEYGPGEETWKDMVEA--NKNVLDKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLL 265
Query: 129 EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFS 188
G F V DTG PET ++VEKH+G+ I +R+K
Sbjct: 266 LALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEI-------------IRTKSE-E 311
Query: 189 FYEDGHQE---------CCRVRKVRPLRRAL-----KGLRAWITGQRKDQSPGTRSEIPV 234
F+E + C V K+ PL + + +++ GQRK +S RS+ P
Sbjct: 312 FWEKLEEYGPPARDNRWCSEVCKLEPLGKLIDEKYEGECLSFV-GQRKYES-FNRSKKPR 369
Query: 235 VQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPC 292
+ +P ++ + + P+ + +W +L P N L+ QG+ IGC C
Sbjct: 370 IWRNPY---IKKQILAA----PILHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMC 420
>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed
of eukaryotic proteins similar to Saccharomyces
cerevisiae MPD1 protein, which contains a single redox
active TRX domain located at the N-terminus, and an ER
retention signal at the C-terminus indicative of an
ER-resident protein. MPD1 has been shown to suppress the
maturation defect of carboxypeptidase Y caused by
deletion of the yeast PDI1 gene. Other characterized
members of this subfamily include the Aspergillus niger
prpA protein and Giardia PDI-1. PrpA is non-essential to
strain viability, however, its transcript level is
induced by heterologous protein expression suggesting a
possible role in oxidative protein folding during high
protein production. Giardia PDI-1 has the ability to
refold scrambled RNase and exhibits transglutaminase
activity.
Length = 109
Score = 45.4 bits (108), Expect = 3e-06
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 435
LV YAPWC C+ ++ Y + A +L G V+V D D+ + K + FPT+
Sbjct: 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80
Query: 436 FP------KHSSKPIKYPSERRDVDSLMAFV 460
F KH+ + + +++ FV
Sbjct: 81 FRPPKKASKHAVEDYNGERSAK---AIVDFV 108
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 49.0 bits (117), Expect = 3e-06
Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 41/218 (18%)
Query: 93 KELENASPLEIMDRALEKFGND---IAIAFSGAEDVALIEY-AHLTGRPFRVFSLDTGRL 148
++LE S L I+ +EK+ N I +FSG +D ++ A V +DTG
Sbjct: 160 EKLEENS-LSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLE 218
Query: 149 NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE---------CCR 199
PET + + K + + ++ + +F+E+ +E C
Sbjct: 219 YPETINYVKDFAKKYDLNLD-----------TLDGD---NFWENLEKEGIPTKDNRWCNS 264
Query: 200 VRKVRPLRRALKGLRAW-----ITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW 254
K+ PL+ LK I G RK +S TR+ + +E G +
Sbjct: 265 ACKLMPLKEYLKKKYGNKKVLTIDGSRKYES-FTRANLD-------YERKSGFIDFQTNV 316
Query: 255 NPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPC 292
P+ + DIW+++ D+ N L+ +G+ IGC C
Sbjct: 317 FPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLC 354
>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of
proteins similar to human PDIR (for Protein Disulfide
Isomerase Related). PDIR is composed of three redox
active TRX (a) domains and an N-terminal redox inactive
TRX-like (b) domain. Similar to PDI, it is involved in
oxidative protein folding in the endoplasmic reticulum
(ER) through its isomerase and chaperone activities.
These activities are lower compared to PDI, probably due
to PDIR acting only on a subset of proteins. PDIR is
preferentially expressed in cells actively secreting
proteins and its expression is induced by stress.
Similar to PDI, the isomerase and chaperone activities
of PDIR are independent; CXXC mutants lacking isomerase
activity retain chaperone activity.
Length = 104
Score = 44.6 bits (106), Expect = 6e-06
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG------VKVGKFRADGD 416
E+ + +++ LV+ YAPWC C+ M+ + + A +L +G V K D
Sbjct: 8 EDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDAL 67
Query: 417 QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 451
++EY + FPT +F KY ER
Sbjct: 68 KEEYNVK-----GFPTFKYFENGKFV-EKYEGERT 96
>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I,
which includes proteins that exclusively encode a TRX
domain; and Group II, which are composed of fusion
proteins of TRX and additional domains. Group I TRX is a
small ancient protein that alter the redox state of
target proteins via the reversible oxidation of an
active site dithiol, present in a CXXC motif, partially
exposed at the protein's surface. TRX reduces protein
disulfide bonds, resulting in a disulfide bond at its
active site. Oxidized TRX is converted to the active
form by TRX reductase, using reducing equivalents
derived from either NADPH or ferredoxins. By altering
their redox state, TRX regulates the functions of at
least 30 target proteins, some of which are enzymes and
transcription factors. It also plays an important role
in the defense against oxidative stress by directly
reducing hydrogen peroxide and certain radicals, and by
serving as a reductant for peroxiredoxins. At least two
major types of functional TRXs have been reported in
most organisms; in eukaryotes, they are located in the
cytoplasm and the mitochondria. Higher plants contain
more types (at least 20 TRX genes have been detected in
the genome of Arabidopsis thaliana), two of which (types
f amd m) are located in the same compartment, the
chloroplast. Also included in the alignment are TRX-like
domains which show sequence homology to TRX but do not
contain the redox active CXXC motif. Group II proteins,
in addition to either a redox active TRX or a TRX-like
domain, also contain additional domains, which may or
may not possess homology to known proteins.
Length = 93
Score = 41.4 bits (98), Expect = 6e-05
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 422
E L +P +V +APWC C+A+ ELA++ VK K D + E A
Sbjct: 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD-ENPELA- 56
Query: 423 QKLQLGSFPTILFF 436
++ + S PT LFF
Sbjct: 57 EEYGVRSIPTFLFF 70
>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large,
diverse group of proteins containing a TRX-fold. Many
members contain a classic TRX domain with a redox active
CXXC motif. They function as protein disulfide
oxidoreductases (PDOs), altering the redox state of
target proteins via the reversible oxidation of their
active site dithiol. The PDO members of this superfamily
include TRX, protein disulfide isomerase (PDI),
tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial
Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein
families. Members of the superfamily that do not
function as PDOs but contain a TRX-fold domain include
phosducins, peroxiredoxins and glutathione (GSH)
peroxidases, SCO proteins, GSH transferases (GST,
N-terminal domain), arsenic reductases, TRX-like
ferredoxins and calsequestrin, among others.
Length = 69
Score = 40.8 bits (95), Expect = 6e-05
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK-EYAKQKLQLGSFPTIL 434
LV+ YAPWC FCQA+ ELA GVK D D E ++ +G PT++
Sbjct: 1 LVLFYAPWCPFCQALRPVLAELALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLV 58
Query: 435 FF 436
F
Sbjct: 59 VF 60
>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily;
ERdj5, also known as JPDI and macrothioredoxin, is a
protein containing an N-terminal DnaJ domain and four
redox active TRX domains. This subfamily is comprised of
the first TRX domain of ERdj5 located after the DnaJ
domain at the N-terminal half of the protein. ERdj5 is a
ubiquitous protein localized in the endoplasmic
reticulum (ER) and is abundant in secretory cells. It's
transcription is induced during ER stress. It interacts
with BiP through its DnaJ domain in an ATP-dependent
manner. BiP, an ER-resident member of the Hsp70
chaperone family, functions in ER-associated degradation
and protein translocation.
Length = 101
Score = 40.6 bits (95), Expect = 1e-04
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 411
+VTL+R + + E W V Y+P C C + ++ E A ++ G +++G
Sbjct: 1 PEIVTLDRGDFD---AAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAV 56
Query: 412 RADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAF 459
GD + + + + S+P++ FP P KY + R +SL+ F
Sbjct: 57 NC-GDDRMLCRSQ-GVNSYPSLYVFPS-GMNPEKYYGD-RSKESLVKF 100
>gnl|CDD|236300 PRK08576, PRK08576, hypothetical protein; Provisional.
Length = 438
Score = 43.9 bits (104), Expect = 1e-04
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 97 NASPLEIMDRA----LEKFGN-DIAIAFSGAED--VALIEYAHLTGRPF---RVFSLDTG 146
N LE ++A L KF + + +SG +D AL+ L + F +DTG
Sbjct: 214 NREVLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALL----LAKKAFGDVTAVYVDTG 269
Query: 147 RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE-CCRVRKVRP 205
P T + ++V + G+ + V+V + G+ + H C KV
Sbjct: 270 YEMPLTDEYVEKVAEKLGVDLIRA---GVDVPMPIEKYGMPT-----HSNRWCTKLKVEA 321
Query: 206 LRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN 263
L A++ L + G R +S R P PV E LV P+ G
Sbjct: 322 LEEAIRELEDGLLVVGDRDGESA-RRRLRP-----PVVERKTNFGKILVV-MPIKFWSGA 374
Query: 264 DIWNFLRTMDVPINSLHSQGYISIGCEPC 292
+ ++ + +N L+ +G+ +GC C
Sbjct: 375 MVQLYILMNGLELNPLYYKGFYRLGCYIC 403
>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of
proteins similar to the TRX-related human transmembrane
protein, TMX. TMX is a type I integral membrane protein;
the N-terminal redox active TRX domain is present in the
endoplasmic reticulum (ER) lumen while the C-terminus is
oriented towards the cytoplasm. It is expressed in many
cell types and its active site motif (CPAC) is unique.
In vitro, TMX reduces interchain disulfides of insulin
and renatures inactive RNase containing incorrect
disulfide bonds. The C. elegans homolog, DPY-11, is
expressed only in the hypodermis and resides in the
cytoplasm. It is required for body and sensory organ
morphogeneis. Another uncharacterized TRX-related
transmembrane protein, human TMX4, is included in the
alignment. The active site sequence of TMX4 is CPSC.
Length = 101
Score = 40.1 bits (94), Expect = 2e-04
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 375 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 434
W++ YAPWC CQ ++ + E AD G+ V K D Q+ + + + PTI
Sbjct: 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAK--VDVTQEPGLSGRFFVTALPTIY 76
Query: 435 FFPKHSSKPI--KYPSERRDVDSLMAFV 460
H+ + +Y RD + L++F+
Sbjct: 77 ----HAKDGVFRRYQGP-RDKEDLISFI 99
>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin. Several proteins, such as
protein disulfide isomerase, have two or more copies of
a domain closely related to thioredoxin. This model is
designed to recognize authentic thioredoxin, a small
protein that should be hit exactly once by This model.
Any protein that hits once with a score greater than the
second (per domain) trusted cutoff may be taken as
thioredoxin [Energy metabolism, Electron transport].
Length = 101
Score = 40.0 bits (94), Expect = 2e-04
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 373 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432
+P LV +APWC C+ + ELA + G VK K D + + A K + S PT
Sbjct: 15 KPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVD-ENPDIA-AKYGIRSIPT 71
Query: 433 ILFFPK 438
+L F
Sbjct: 72 LLLFKN 77
>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins
[Posttranslational modification, protein turnover,
chaperones / Energy production and conversion].
Length = 127
Score = 37.6 bits (86), Expect = 0.003
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 435
LV +APWC C+A ELA++ G+ V D + A+ + + S PT+L
Sbjct: 36 LVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLL 95
Query: 436 F 436
F
Sbjct: 96 F 96
>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain.
Length = 105
Score = 36.2 bits (84), Expect = 0.006
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 376 LVVLYAPWCQFCQAMEG---SYVELADKLAGNGV-----------KVGKFRADGDQKEYA 421
LVV P C +C+ + ++ + L N V +KE A
Sbjct: 9 LVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKELA 68
Query: 422 KQKLQLGSFPTILFFPKHSSKPIKYP 447
+K + PTI+F + + P
Sbjct: 69 -RKYGVRGTPTIVFLDGDGKEVARLP 93
>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44
(ERp44) subfamily; ERp44 is an ER-resident protein,
induced during stress, involved in thiol-mediated ER
retention. It contains an N-terminal TRX domain, similar
to that of PDIa, with a CXFS motif followed by two redox
inactive TRX-like domains, homologous to the b and b'
domains of PDI. The CXFS motif in the N-terminal domain
allows ERp44 to form stable reversible mixed disulfides
with its substrates. Through this activity, ERp44
mediates the ER localization of Ero1alpha, a protein
that oxidizes protein disulfide isomerases into their
active form. ERp44 also prevents the secretion of
unassembled cargo protein with unpaired cysteines. It
also modulates the activity of inositol
1,4,5-triphosphate type I receptor (IP3R1), an
intracellular channel protein that mediates calcium
release from the ER to the cytosol.
Length = 108
Score = 34.7 bits (80), Expect = 0.018
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKL---AGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432
LV YA WC+F Q + + E A K+ + KV + D D++ + ++ +PT
Sbjct: 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81
Query: 433 I-LFFPKHSSKPIKYPSERRDVDSLMAFV 460
+ LF K +Y + R V++L FV
Sbjct: 82 LKLFRNGMMMK-REYRGQ-RSVEALAEFV 108
>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein
[Posttranslational modification, protein turnover,
chaperones / Energy production and conversion].
Length = 569
Score = 37.0 bits (86), Expect = 0.021
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 366 ARLDHRQEPWLVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVGKFRAD----GDQK 418
A + + +P ++ YA WC C+ E S ++ L V +AD
Sbjct: 468 ALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD----VVLLQADVTANDPAI 523
Query: 419 EYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 464
++L + PT LFF S+P D AF++ L
Sbjct: 524 TALLKRLGVFGVPTYLFFGPQGSEPEILT-GFLTAD---AFLEHLE 565
>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein
family; composed of uncharacterized proteins of about
500-800 amino acids, containing an N-terminal DnaJ
domain followed by one redox active TRX domain. DnaJ is
a member of the 40 kDa heat-shock protein (Hsp40) family
of molecular chaperones, which regulate the activity of
Hsp70s. TRX is involved in the redox regulation of many
protein substrates through the reduction of disulfide
bonds. TRX has been implicated to catalyse the reduction
of Hsp33, a chaperone holdase that binds to unfolded
protein intermediates. The presence of DnaJ and TRX
domains in members of this family suggests that they
could be involved in a redox-regulated chaperone
network.
Length = 111
Score = 34.3 bits (79), Expect = 0.029
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 347 DIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGV 406
D F+ + +T ++ EN ++P+L+ + + WC C +E + E+ +L GV
Sbjct: 1 DSFDYKYSLTFSQ--YENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGV 58
Query: 407 KVGKFRADGDQKEYAKQKLQLGSFPTIL 434
+ + + +KL S P I+
Sbjct: 59 GIAT--VNAGHERRLARKLGAHSVPAIV 84
>gnl|CDD|235375 PRK05253, PRK05253, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 301
Score = 35.1 bits (82), Expect = 0.058
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 93 KELENASPLEIMDRALEKFGNDIAIAFSGAED----VALIEYAHLTGR-PFRVFSLDTGR 147
+LE S + I+ +F N + +S +D + L A G+ PF + +DTG
Sbjct: 10 DQLEAES-IHILREVAAEFEN-PVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGW 67
Query: 148 LNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPL 206
PE F D K G+ I + P+ + + + + G + K L
Sbjct: 68 KFPEMIEFRDRRAKELGLELIVHSNPEGIA-RGINPFRH-------GSAKHTNAMKTEGL 119
Query: 207 RRAL--KGLRAWITGQRKD 223
++AL G A G R+D
Sbjct: 120 KQALEKYGFDAAFGGARRD 138
>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum
protein 44 (ERp44)-like subfamily; composed of
uncharacterized PDI-like eukaryotic proteins containing
only one redox active TRX (a) domain with a CXXS motif,
similar to ERp44. CXXS is still a redox active motif;
however, the mixed disulfide formed with the substrate
is more stable than those formed by CXXC motif proteins.
PDI-related proteins are usually involved in the
oxidative protein folding in the ER by acting as
catalysts and folding assistants. ERp44 is involved in
thiol-mediated retention in the ER.
Length = 100
Score = 31.6 bits (72), Expect = 0.19
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 365 LARLDHRQEP--WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYA 421
L V+ YA WC F + + + L+ ++ + K
Sbjct: 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHF----NALSSMFPQIRHLAIEESSIKPSL 64
Query: 422 KQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460
+ + FPTIL F +S+ ++Y + R +DSL AF
Sbjct: 65 LSRYGVVGFPTILLF--NSTPRVRY-NGTRTLDSLAAFY 100
>gnl|CDD|212823 cd11890, MIA, Melanoma Inhibitory Activity protein. MIA is a
single domain protein that adopts a Src Homology 3 (SH3)
domain-like fold; it contains an additional antiparallel
beta sheet and two disulfide bonds compared to classical
SH3 domains. MIA is secreted from malignant melanoma
cells and it plays an important role in melanoma
development and invasion. MIA is expressed by
chondrocytes in normal tissues and may be important in
the cartilage cell phenotype. Unlike classical SH3
domains, MIA does not bind proline-rich ligands. It
binds peptide ligands with sequence similarity to type
III human fibronectin repeats.
Length = 98
Score = 31.0 bits (70), Expect = 0.36
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 380 YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 439
AP C+F G V + KL G G GD Y +Q +LG FP+ +
Sbjct: 23 MAPDCRFIPIQRGQVVYVFSKLKGRGRLFWGGSVQGDY--YGEQAARLGYFPSSIVQEDQ 80
Query: 440 SSKPIK 445
KP K
Sbjct: 81 YLKPGK 86
>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was
originally isolated from the cyanobacterium
Synechococcus. It is found only in oxygenic
photosynthetic organisms. TRX is a small enzyme that
participate in redox reactions, via the reversible
oxidation of an active site dithiol present in a CXXC
motif. Disruption of the txlA gene suggests that the
protein is involved in the redox regulation of the
structure and function of photosynthetic apparatus. The
plant homolog (designated as HCF164) is localized in the
chloroplast and is involved in the assembly of the
cytochrome b6f complex, which takes a central position
in photosynthetic electron transport.
Length = 142
Score = 31.2 bits (71), Expect = 0.46
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 374 PWLVVLYAPWCQFCQAMEGSYVELADK 400
P LV YA WC CQ M +L K
Sbjct: 22 PTLVEFYADWCTVCQEMAPDVAKLKQK 48
>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA,
ResA, DsbE and similar proteins. TlpA, ResA and DsbE are
bacterial protein disulfide reductases with important
roles in cytochrome maturation. They are
membrane-anchored proteins with a soluble TRX domain
containing a CXXC motif located in the periplasm. The
TRX domains of this family contain an insert,
approximately 25 residues in length, which correspond to
an extra alpha helix and a beta strand when compared
with TRX. TlpA catalyzes an essential reaction in the
biogenesis of cytochrome aa3, while ResA and DsbE are
essential proteins in cytochrome c maturation. Also
included in this family are proteins containing a
TlpA-like TRX domain with domain architectures similar
to E. coli DipZ protein, and the N-terminal TRX domain
of PilB protein from Neisseria which acts as a disulfide
reductase that can recylce methionine sulfoxide
reductases.
Length = 116
Score = 30.7 bits (70), Expect = 0.50
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 369 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV 408
D + + LV +A WC C+A LA + +GV+V
Sbjct: 16 DLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEV 55
>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal
periplasmic domain of the bacterial protein DsbD. It
contains a CXXC motif in a TRX fold and shuttles the
reducing potential from the membrane domain (DsbD beta)
to the N-terminal periplasmic domain (DsbD alpha). DsbD
beta, a transmembrane domain comprising of eight
helices, acquires its reducing potential from the
cytoplasmic thioredoxin. DsbD alpha transfers the
acquired reducing potential from DsbD gamma to target
proteins such as the periplasmic protein disulphide
isomerases, DsbC and DsbG. This flow of reducing
potential from the cytoplasm through DsbD allows DsbC
and DsbG to act as isomerases in the oxidizing
environment of the bacterial periplasm. DsbD also
transfers reducing potential from the cytoplasm to
specific reductases in the periplasm which are involved
in the maturation of cytochromes.
Length = 104
Score = 30.3 bits (69), Expect = 0.58
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 365 LARLDHRQEPWLVVLYAPWCQFCQAMEGSYV----ELADKLAGNGVKVGKFRAD---GDQ 417
LA+ + +P V A WC C+ E V E+ L + V + RAD D
Sbjct: 4 LAQALAQGKPVFVDFTADWCVTCKVNE-KVVFSDPEVQAALKKDVVLL---RADWTKNDP 59
Query: 418 KEYA-KQKLQLGSFPTILFFPKHSSKP 443
+ A ++ + PT LF+
Sbjct: 60 EITALLKRFGVFGPPTYLFYGPGGEPE 86
>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily.
The DRE-TIM metallolyase superfamily includes
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 265
Score = 31.7 bits (73), Expect = 0.61
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 328 DAAVNGNGNGAGNAS-EAVADIFNSQNLVT-LNRTGMENLARL 368
D +VNG G AGNA+ E + + T ++ + ++R
Sbjct: 220 DGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEISRY 262
>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein
containing a redox-inactive TRX-like domain. Its gene
has been sequenced from several gammaproteobacteria and
actinobacteria.
Length = 96
Score = 29.9 bits (68), Expect = 0.73
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431
Q P +V +AP + + LA++ G V + + D + Q+ + + P
Sbjct: 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLA---KVNCDAQPQIAQQFGVQALP 68
Query: 432 TILFF 436
T+ F
Sbjct: 69 TVYLF 73
>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional.
Length = 139
Score = 30.8 bits (70), Expect = 0.74
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 362 MENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKE 419
E L +L P ++ +APWC C+ + ++A + +G VKV ++E
Sbjct: 42 GETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNT----EAERE 97
Query: 420 YAKQKLQLGSFPTILFF 436
+ + ++ S PTI+ F
Sbjct: 98 LSAR-FRIRSIPTIMIF 113
>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human
TMX2, a 372-amino acid TRX-related transmembrane
protein, identified and characterized through the
cloning of its cDNA from a human fetal library. It
contains a TRX domain but the redox active CXXC motif is
replaced with SXXC. Sequence analysis predicts that TMX2
may be a Type I membrane protein, with its C-terminal
half protruding on the luminal side of the endoplasmic
reticulum (ER). In addition to the TRX domain,
transmembrane region and ER-retention signal, TMX2 also
contains a Myb DNA-binding domain repeat signature and a
dileucine motif in the tail.
Length = 152
Score = 30.4 bits (69), Expect = 0.89
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 410
+++ +E D R WLV + W C + EL+ K N +K GK
Sbjct: 27 PEHIKYFTPKTLEEELERDKRVT-WLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGK 85
>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide bond.
Length = 81
Score = 29.2 bits (66), Expect = 0.89
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV--ELADKLAGNGVKVGKFRADGDQKEY 420
E LA+ +P LV A WC CQA++ ++ LA V + R D ++
Sbjct: 8 EALAKAREEGKPLLVDFGADWCPTCQALDRDFLSDPRVKALAEKFVLL---RVDVTTRDP 64
Query: 421 AKQKLQLGSFPTILFFPK 438
G P ++F
Sbjct: 65 NLLLDGQG-VPHVVFLDP 81
>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase
(QSOX) subfamily; QSOX is a eukaryotic protein
containing an N-terminal redox active TRX domain,
similar to that of PDI, and a small C-terminal flavin
adenine dinucleotide (FAD)-binding domain homologous to
the yeast ERV1p protein. QSOX oxidizes thiol groups to
disulfides like PDI, however, unlike PDI, this oxidation
is accompanied by the reduction of oxygen to hydrogen
peroxide. QSOX is localized in high concentrations in
cells with heavy secretory load and prefers peptides and
proteins as substrates, not monothiols like glutathione.
Inside the cell, QSOX is found in the endoplasmic
reticulum and Golgi. The flow of reducing equivalents in
a QSOX-catalyzed reaction goes from the dithiol
substrate -> dithiol of the QSOX TRX domain -> dithiols
of the QSOX ERV1p domain -> FAD -> oxygen.
Length = 114
Score = 29.9 bits (68), Expect = 0.95
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 375 WLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAK--QKLQLGSF 430
WLV YA WC C+A ++ +LA L V+V D +E + + +
Sbjct: 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVA--AVDCADEENVALCRDFGVTGY 79
Query: 431 PTILFFP 437
PT+ +FP
Sbjct: 80 PTLRYFP 86
>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 304
Score = 30.8 bits (70), Expect = 1.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 371 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 430
R+ P LV +APWC C+ + + +LA + G K+ K D + A Q + S
Sbjct: 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEP-MVAAQ-FGVQSI 98
Query: 431 PTILFF 436
PT+ F
Sbjct: 99 PTVYAF 104
>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide bond.
Length = 94
Score = 28.8 bits (65), Expect = 1.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 422
L+ +A WC C+A EL +KL V++ D D++E+ K
Sbjct: 5 LLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDRDEEEWKK 51
>gnl|CDD|239304 cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP1 subfamily; EFP1
is a binding partner protein of thyroid oxidase (ThOX),
also called Duox. ThOX proteins are responsible for the
generation of hydrogen peroxide, a crucial substrate of
thyroperoxidase, which functions to iodinate
thyroglobulin and synthesize thyroid hormones. EFP1 was
isolated through a yeast two-hybrid method using the
EF-hand fragment of dog Duox1 as a bait. It could be one
of the partners in the assembly of a multiprotein
complex constituting the thyroid hydrogen peroxide
generating system. EFP1 contains two TRX domains related
to the redox active TRX domains of protein disulfide
isomerase (PDI). This subfamily is composed of the
N-terminal TRX domain of EFP1, which contains a CXXS
sequence in place of the typical CXXC motif, similar to
ERp44. The CXXS motif allows the formation of stable
mixed disulfides, crucial for the ER-retention function
of ERp44.
Length = 113
Score = 29.4 bits (66), Expect = 1.7
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 362 MENLARLDHRQ---EPWLVVLYAPWCQFCQAMEGSYVELADKLA 402
L + + E LV+ YAPW QA + ++A KL+
Sbjct: 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS 59
>gnl|CDD|240247 PTZ00055, PTZ00055, glutathione synthetase; Provisional.
Length = 619
Score = 30.1 bits (68), Expect = 2.6
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 89 EQFAKELENASPLEIMDRALEKFGND----IAIAFSGAEDVALIEYAHLTG--RPFRVFS 142
E F E + A + LEKF N I F + L EY L G + +
Sbjct: 234 ECFDLEGKGAERPMVGSILLEKFKNHFYNGIVTCFKKCHRMYLDEYKPLFGKNKVCVMSI 293
Query: 143 LDTGRLNP-ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE 196
+ N + Y+ +E+ +GI ++ + + E+ L K LF Y E
Sbjct: 294 VHEDLFNFFDKYKTANELFDKYGIHVKTLTIN--ELILLYEKKKLFLNYPWETLE 346
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may not be an
autonomously folding unit, but an integral part of the
helicase; 4 helicase superfamilies at present according
to the organization of their signature motifs; all
helicases share the ability to unwind nucleic acid
duplexes with a distinct directional polarity; they
utilize the free energy from nucleoside triphosphate
hydrolysis to fuel their translocation along DNA,
unwinding the duplex in the process.
Length = 131
Score = 28.7 bits (65), Expect = 2.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 377 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE 419
V+++ P + ELA+ L G+KV DG Q+E
Sbjct: 31 VLIFCPSKKMLD-------ELAELLRKPGIKVAALHGDGSQEE 66
>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate
transaminase.
Length = 817
Score = 30.1 bits (68), Expect = 3.3
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 67 VPLAATLATPEVAEKVEGE 85
VPLAATLAT EV E G
Sbjct: 661 VPLAATLATEEVFEAFRGP 679
>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for
copper sensitivity D protein (ScsD) and actinobacterial
DsbE homolog subfamily; composed of ScsD, the DsbE
homolog of Mycobacterium tuberculosis (MtbDsbE) and
similar proteins, all containing a redox-active CXXC
motif. The Salmonella typhimurium ScsD is a
thioredoxin-like protein which confers copper tolerance
to copper-sensitive mutants of E. coli. MtbDsbE has been
characterized as an oxidase in vitro, catalyzing the
disulfide bond formation of substrates like hirudin. The
reduced form of MtbDsbE is more stable than its oxidized
form, consistent with an oxidase function. This is in
contrast to the function of DsbE from gram-negative
bacteria which is a specific reductase of apocytochrome
c.
Length = 123
Score = 28.4 bits (64), Expect = 3.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 371 RQEPWLVVLYAPWCQFCQAMEGSYVELAD 399
+P LV +A WC C+ + +LA
Sbjct: 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAA 47
>gnl|CDD|236347 PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.
Length = 227
Score = 29.2 bits (66), Expect = 3.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 449 ERRDVDSLMAFVDAL 463
RRD+ SLMA +DAL
Sbjct: 189 FRRDMPSLMALLDAL 203
>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated.
Length = 384
Score = 29.5 bits (66), Expect = 4.5
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 106 RALEKFGNDIAIAFS---GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKH 162
LE + A++FS GA A++ + R+ S+ L +T+ FF++V K
Sbjct: 74 AVLENAEH--ALSFSSGMGAITSAILSLIK---KGKRILSISD--LYGQTFYFFNKVLKT 126
Query: 163 FGIRIEYMFPD 173
GI ++Y+ D
Sbjct: 127 LGIHVDYIDTD 137
>gnl|CDD|222346 pfam13728, TraF, F plasmid transfer operon protein. TraF protein
undergoes proteolytic processing associated with export.
The 19 amino acids at the amino terminus of the
polypeptides appear to constitute a typical membrane
leader peptide - not included in this family, while the
remainder of the molecule is predicted to be primarily
hydrophilic in character. F plasmid TraF and TraH are
required for F pilus assembly and F plasmid transfer,
and they are both localised to the outer membrane in the
presence of the complete F transfer region, especially
TraV, the putative anchor.
Length = 215
Score = 28.7 bits (65), Expect = 5.8
Identities = 21/86 (24%), Positives = 28/86 (32%), Gaps = 22/86 (25%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV------GKF-------RADGDQKEYAK 422
L Y C +CQA ADK G V G R D Q
Sbjct: 124 LFFFYRGDCPYCQAQAPILQAFADK---YGFSVIPVSVDGGPLPGFPNNRVDTGQ----A 176
Query: 423 QKLQLGSFPTILFFPKHSS--KPIKY 446
Q+L + + P + + KP+ Y
Sbjct: 177 QRLGVKTTPALFLVDPKTGKVKPVAY 202
>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB;
Reviewed.
Length = 537
Score = 28.7 bits (65), Expect = 6.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 201 RKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVF 241
R RPLR + L W+ + KD+ G R + + ++ P+F
Sbjct: 27 RLTRPLRLWRRSLF-WMPNRHKDKPRGERLRLALEELGPIF 66
>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein. This family includes the
hamartin protein which is thought to function as a
tumour suppressor. The hamartin protein interacts with
the tuberin protein pfam03542. Tuberous sclerosis
complex (TSC) is an autosomal dominant disorder and is
characterized by the presence of hamartomas in many
organs, such as brain, skin, heart, lung, and kidney. It
is caused by mutation either TSC1 or TSC2 tumour
suppressor gene. TSC1 encodes a protein, hamartin,
containing two coiled-coil regions, which have been
shown to mediate binding to tuberin. The TSC2 gene codes
for tuberin pfam03542. These two proteins function
within the same pathway(s) regulating cell cycle, cell
growth, adhesion, and vesicular trafficking.
Length = 667
Score = 28.8 bits (64), Expect = 7.4
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 58 AEPKRNDSVVPLAATLATPEVAEKVEGEEDFEQFAKE--LENASPLEIMDRALE 109
A PK L + T E K G+ ++ +E + + SPLE++DR ++
Sbjct: 557 ALPKTAC----LFLSRKTYEALLKEAGQRLSQEEGEEEQVSSTSPLEVLDRLIQ 606
>gnl|CDD|240484 cd12904, SPRY_BSPRY, SPRY domain in Ro-Ret family. This domain,
named BSPRY, has been identified in the Ro-Ret family,
since the protein is composed of a B-box, an
alpha-helical coiled coil and a SPRY domain. The gene
for BSPRY resides on human chromosome 9 and is
specifically expressed in testis. The function of BSPRY
is not known, but several related proteins of the
RING-Box-coiled-coil (RBCC) family have been implicated
in cell transformation.
Length = 170
Score = 27.9 bits (62), Expect = 8.6
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 356 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGV 406
+L R G N ARL + W+ Y +F + +EL GV
Sbjct: 75 SLERKGSGNEARLGYNANSWVFSRYDGDFRFSHNGQHVPLELLRGPKRIGV 125
>gnl|CDD|216767 pfam01890, CbiG_C, Cobalamin synthesis G C-terminus. Members of
this family are involved in cobalamin synthesis. A
Synechocystis sp. PCC 6803 precorrin methylase has been
designated cbiH but in fact represents a fusion between
cbiH and cbiG. As other multi-functional proteins
involved in cobalamin biosynthesis catalyze adjacent
steps in the pathway, including CysG, CobL (CbiET),
CobIJ and CobA-HemD, it is therefore possible that CbiG
catalyzes a reaction step adjacent to CbiH. In the
anaerobic pathway such a step could be the formation of
a gamma lactone, which is thought to help to mediate the
anaerobic ring contraction process. Within the cobalamin
synthesis pathway CbiG catalyzes the both the opening of
the lactone ring and the extrusion of the two-carbon
fragment of cobalt-precorrin-5A from C-20 and its
associated methyl group (deacylation) to give
cobalt-precorrin-5B. This family is the C-terminal
region, and the mid- and N-termival parts are conserved
independently in other families.
Length = 120
Score = 27.0 bits (61), Expect = 8.6
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 122 AEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI 165
A++ L+E A G P R FS + + V G+
Sbjct: 44 ADEPGLLELAARLGVPLRFFSAEELAAVERVPTPSEFVFAEVGV 87
>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor;
Provisional.
Length = 571
Score = 28.6 bits (65), Expect = 8.8
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV----ELADKLAGNGVK 407
+ + L++ LA + +P ++ LYA WC C+ E Y ++ LA +
Sbjct: 458 KTVAELDQA----LAEAKGKGKPVMLDLYADWCVACKEFE-KYTFSDPQVQQALADTVL- 511
Query: 408 VGKFRAD-----GDQKEYAKQKLQLGSFPTILFF 436
+AD + K + PTILFF
Sbjct: 512 ---LQADVTANNAEDVALLKH-YNVLGLPTILFF 541
>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 460
Score = 28.3 bits (64), Expect = 8.9
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 86 EDFEQFAKELENASPLEI---MDRALEKFGNDIAIAFSGAEDVAL 127
E E FA L A P EI ++RA+ D A A E V L
Sbjct: 387 EAAEAFAATLGGAVPFEICGTLERAVAAAAAD-AAADGAPEPVVL 430
>gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 256
Score = 28.0 bits (63), Expect = 9.0
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 106 RALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRV--FSLDTGRLNPETYRFFDEVEKHF 163
RAL G D+AI ++ L V F D L+ D + +
Sbjct: 20 RALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHE-AMLDAAQAAW 78
Query: 164 GIRIEYMFPDAVEVQALVR 182
G RI+ + +A V VR
Sbjct: 79 G-RIDCLVNNA-GVGVKVR 95
>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
Length = 366
Score = 28.1 bits (63), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 152 TYRFFDEVEKHFGIRIEYMFP---DAVEVQALVRSKGLF 187
TYR F+E K + +R Y+ A+E +K +F
Sbjct: 103 TYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIF 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,502,511
Number of extensions: 2302024
Number of successful extensions: 2485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2436
Number of HSP's successfully gapped: 82
Length of query: 464
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 364
Effective length of database: 6,502,202
Effective search space: 2366801528
Effective search space used: 2366801528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)