RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012415
(464 letters)
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
{Escherichia coli [TaxId: 562]}
Length = 215
Score = 170 bits (431), Expect = 4e-51
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 18/228 (7%)
Query: 65 SVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAE 123
S + L A P KV+ + ELE + AL+ + ++ S G +
Sbjct: 1 SKLDLNALNELP----KVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQ 56
Query: 124 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 183
+ + V DTG L PETYRF DE+ + ++ R
Sbjct: 57 AAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARY 116
Query: 184 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVF 241
L+ +G ++ + KV P+ RALK L A W G R++QS +R+ +PV+ +
Sbjct: 117 GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ--- 172
Query: 242 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGC 289
+ K P+ + I+ +L+ + + L +GY+S+G
Sbjct: 173 -------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGD 213
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 109 bits (272), Expect = 3e-28
Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 18/203 (8%)
Query: 93 KELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTG-----RPFRVFSLDTGR 147
K+LE A + I+ +F N + +S +D A++ + PF V +DT
Sbjct: 9 KQLE-AESIHIIREVAAEFDN-PVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 66
Query: 148 LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQEC--CRVRKVRP 205
E YRF D++ + G+ + Q + + + D + +
Sbjct: 67 KFQEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHG 126
Query: 206 LRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEG--------GVGSLVKWNPV 257
A G R R + + DP + E G ++ P+
Sbjct: 127 FDAAFGGARRDEEKSRAKE-RVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPL 185
Query: 258 ANVKGNDIWNFLRTMDVPINSLH 280
+N DIW ++ +PI L+
Sbjct: 186 SNWTELDIWQYIYLEGIPIVPLY 208
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 60.1 bits (145), Expect = 8e-12
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 13/117 (11%)
Query: 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGK 410
V L+ + + R +V + + + + +
Sbjct: 3 GCVDLD---ELSFEKTVERFPYSVVKFDIASPYGEKHEA--FTAFSKSAHKATKDLLIAT 57
Query: 411 FRADGDQKEY-----AKQKLQLGSFPTILFFPKHSSKPIKYPSER-RDVDSLMAFVD 461
+ + K+ +FP+I F ++ + ++ PS +D+L AFV
Sbjct: 58 VGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVS 114
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 52.7 bits (126), Expect = 3e-09
Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 350 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG---- 405
+++ + L+ ++ + + LV + + E + LA+ A +
Sbjct: 2 HTKGALPLD---TVTFYKVIPKSKFVLVKFDTQYPYGEKQDE--FKRLAENSASSDDLLV 56
Query: 406 --VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS-SKPIKYPSERRDVDSLMAFVD 461
V + + + + K KL S+P F P+ Y V ++ ++
Sbjct: 57 AEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAV-KVGAIQRWLK 114
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 52.5 bits (125), Expect = 3e-09
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 363 ENLARLDHRQEPWLVVLYAPWC------QFCQAMEGSYVELADKLAGNGVKVGKFRADGD 416
+N + + E ++ + P + + E A L GV G ++ D
Sbjct: 19 KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD 78
Query: 417 QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
K L +I F + + I+Y E D+L+ F+
Sbjct: 79 AAVAKKLGLT--EEDSIYVFKED--EVIEYDGE-FSADTLVEFLL 118
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 49.8 bits (118), Expect = 2e-08
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 373 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432
+ L+ YAPWC C+A+ Y EL A + K A D G FPT
Sbjct: 21 KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQG-FPT 79
Query: 433 ILFFPKHS-SKPIKYPSERRDVDSLMAFVD 461
I +P + +P+ Y R V+ L+ F+
Sbjct: 80 IKLYPAGAKGQPVTYSGS-RTVEDLIKFIA 108
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 47.1 bits (111), Expect = 2e-07
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 412
+++ L + N A + LV YAPWC C+A+ Y + A KL G ++ +
Sbjct: 8 HVLVLRK---SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAK 64
Query: 413 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
D ++ Q+ + +PTI FF + K + R+ D ++ ++
Sbjct: 65 VDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLK 113
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 45.7 bits (108), Expect = 8e-07
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Query: 369 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 428
L+ EL + +V AD +Q E + +
Sbjct: 27 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAV--ADLEQSEAIGDRFNVR 84
Query: 429 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463
FP L F K S L+ + ++
Sbjct: 85 RFPATLVFTDG--KLRGALSGIHPWAELLTLMRSI 117
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 44.4 bits (104), Expect = 2e-06
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431
LV +A WC C+ + E+AD+ K+ + + DQ K + P
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 432 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463
T+L F + L F+DA
Sbjct: 77 TLLLFKN--GEVAATKVGALSKGQLKEFLDAN 106
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 43.3 bits (101), Expect = 5e-06
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 410
S+ ++T+ E+ + ++P LV +A WC CQ M A+ +
Sbjct: 1 SKGVITITDAEFESE--VLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLK---V 55
Query: 411 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
+ + D +K ++ P + + + D L++F+D
Sbjct: 56 VKLEIDPNPTTVKKYKVEGVPALRLVKG--EQILDSTEGVISKDKLLSFLD 104
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 43.7 bits (102), Expect = 6e-06
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 373 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432
+ LV+ YAPWC C+ + +Y ELAD A V + D + + ++ +PT
Sbjct: 31 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE--GYPT 88
Query: 433 ILFFPK-HSSKPIKYPSERRDVDSLMAFVD 461
I+ +P S+ + Y R +DSL F+
Sbjct: 89 IVLYPGGKKSESVVYQGS-RSLDSLFDFIK 117
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 43.5 bits (102), Expect = 6e-06
Identities = 10/94 (10%), Positives = 20/94 (21%), Gaps = 4/94 (4%)
Query: 370 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 429
L+ EL + +V + + + +
Sbjct: 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVF--R 91
Query: 430 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463
FP L F + L+ + L
Sbjct: 92 FPATLVFTGG--NYRGVLNGIHPWAELINLMRGL 123
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 41.4 bits (96), Expect = 2e-05
Identities = 10/110 (9%), Positives = 26/110 (23%), Gaps = 1/110 (0%)
Query: 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 410
N+ L T + ++E + C +C+ G+ + + + +
Sbjct: 5 LDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINS 64
Query: 411 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 460
A + ++ S + F
Sbjct: 65 EEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSS-MSAQEIKDFA 113
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 37.8 bits (87), Expect = 2e-04
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 435
+ V +P C +C + + G K+ + D + L + P I
Sbjct: 5 IEVFTSPTCPYCPMAI---EVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61
Query: 436 FPKHSSKPIKYPSERRDVDSLMAFVDAL 463
+++ + L ++
Sbjct: 62 NGV-----VRF-VGAPSREELFEAINDE 83
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 38.2 bits (88), Expect = 2e-04
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 422
N + +P LV +A WC C+ M E A+ A V V K + D+
Sbjct: 8 ANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAK--LNVDENPETT 64
Query: 423 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463
+ + S PT++ F +P+K + + L A + +
Sbjct: 65 SQFGIMSIPTLILFKGG--EPVKQLIGYQPKEQLEAQLADV 103
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 37.1 bits (85), Expect = 9e-04
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 422
+ P +V+++ WC C+A++ + E + + V + +++ +
Sbjct: 16 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFV-MVNLEDEEEPKDE 74
Query: 423 QKLQLGSFPTILFFPKHSSKPIKY 446
G + + F S K
Sbjct: 75 DFSPDGGYIPRILFLDPSGKVHPE 98
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 35.2 bits (80), Expect = 0.004
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 422
E+ + Q+ +V A WC C+ + + ELA K E
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWN 76
Query: 423 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
+ + PT +F K + + D D L V
Sbjct: 77 VE----AMPTFIFLKD--GKLVDK-TVGADKDGLPTLVA 108
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 34.5 bits (78), Expect = 0.005
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 373 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 432
P LV +APWC C+ + E+A + V + + D+ + + S PT
Sbjct: 20 VPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCV---KLNTDESPNVASEYGIRSIPT 76
Query: 433 ILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
I+ F K + +++ V+
Sbjct: 77 IMVFKGG--KKCETIIGAVPKATIVQTVE 103
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 34.4 bits (78), Expect = 0.006
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 422
LA+ +P +V A WC C+ + + L++ AG V + D D
Sbjct: 15 AQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAVAAVA 71
Query: 423 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
+ + + PT + D L A V
Sbjct: 72 EAAGITAMPTFHVYKD--GVKADD-LVGASQDKLKALVA 107
>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin
containing protein Txnl5) {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 34.4 bits (78), Expect = 0.007
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 360 TGMENLARL--DHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNG----V 406
+G E R H + WC C E E ++
Sbjct: 7 SGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYC 66
Query: 407 KVGKFRADGDQKEYAKQKLQLGSFPTILFF 436
+VG+ D ++ L++ + PT+L +
Sbjct: 67 QVGEKPYWKDPNNDFRKNLKVTAVPTLLKY 96
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 119
Score = 34.1 bits (77), Expect = 0.008
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 342 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 401
EAVA +V L ++ + L +APWC C+ M YV+ A+ L
Sbjct: 2 QEAVAP--EDSAVVKLAT---DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL 56
Query: 402 AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS-SKPIKYPSERRDVDSLMAFV 460
+ + + +Q + + FP++ F + I Y R ++++ F+
Sbjct: 57 VEKNITLAQIDCTENQDLCMEHNIP--GFPSLKIFKNSDVNNSIDYEGPR-TAEAIVQFM 113
Query: 461 D 461
Sbjct: 114 I 114
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 34.0 bits (77), Expect = 0.009
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431
+P ++ ++ WC C+AM Y +LA++ + + + ++L + P
Sbjct: 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEE---YLDVIFLKLDCNQENKTLAKELGIRVVP 81
Query: 432 TILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 464
T + + + D L+ + A R
Sbjct: 82 TFKILKE--NSVVGE-VTGAKYDKLLEAIQAAR 111
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 33.0 bits (74), Expect = 0.010
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 376 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 435
+ + +P C C A + E+A++ V + + + + + PTI+
Sbjct: 6 IELFTSPMCPHCPAAKRVVEEVANE---MPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62
Query: 436 FPK 438
Sbjct: 63 NGD 65
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 32.4 bits (73), Expect = 0.028
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 368 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL 427
+V C C + ++ +++ + D Q + +
Sbjct: 17 SGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSN----KYPQAVFLEVDVHQCQGTAATNNI 72
Query: 428 GSFPTILFF 436
+ PT FF
Sbjct: 73 SATPTFQFF 81
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 33.0 bits (74), Expect = 0.067
Identities = 35/286 (12%), Positives = 83/286 (29%), Gaps = 20/286 (6%)
Query: 93 KELENASP--LEIMDRAL-EKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTG--R 147
+E+E + P + I + L + + +A + + V G +S++
Sbjct: 1 REIEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAG----YWSVECWGGA 56
Query: 148 LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLR 207
RF +E + P++ +Q L+R + L Y + E +
Sbjct: 57 TYDSCIRFLNEDPWERLRTFRKLMPNS-RLQMLLRGQNLLG-YRHYNDEVVDRFVDKSAE 114
Query: 208 RALKGLRAWITGQRKDQSPGTRSEIPVV--QVDPVFEGLEGGVGSLVKWNPVANVKGNDI 265
+ R + + + V ++ + +A +
Sbjct: 115 NGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG 174
Query: 266 WNFLRTMDVPINSLHSQGYISIG--CEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN 323
+ + D+ Y I + + H + +
Sbjct: 175 ADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGV---TEVSLMKAIEAG 231
Query: 324 IKQEDAAVNGNGNGAGNAS-EAVADIFNSQNLVT-LNRTGMENLAR 367
+ D A++ G G+ E+VA++ T L+ + +
Sbjct: 232 VDVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRD 277
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 30.9 bits (69), Expect = 0.12
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 368 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL 427
L ++ W C M+ +A+K+ V D + + +L
Sbjct: 18 LSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIY---LVDITEVPDFNKMYEL 74
Query: 428 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
T++FF +K I + + + ++
Sbjct: 75 YDPCTVMFF--FRNKHIMIDLGTGNNNKINWAME 106
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 30.5 bits (68), Expect = 0.13
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 369 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 428
+ +V A WC C+ ++ + L++K + D D + + ++
Sbjct: 17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF----LEVDVDDCQDVASECEVK 72
Query: 429 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 463
PT FF K K ++ + + L A ++ L
Sbjct: 73 CMPTFQFF-KKGQKVGEFSG--ANKEKLEATINEL 104
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 31.3 bits (70), Expect = 0.13
Identities = 15/135 (11%), Positives = 42/135 (31%), Gaps = 7/135 (5%)
Query: 333 GNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAME- 391
+G +AD+F + + + + ++ + CQ +
Sbjct: 3 SGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNR 62
Query: 392 --GSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIK---Y 446
S + + + + + + + + Y Q +LG FP + + + +
Sbjct: 63 DVWSNEAVKNIIREHFIFWQVYHDSEEGQRY-IQFYKLGDFPYVSILDPRTGQKLVEWHQ 121
Query: 447 PSERRDVDSLMAFVD 461
+D + F+
Sbjct: 122 LDVSSFLDQVTGFLG 136
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 30.1 bits (67), Expect = 0.13
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 362 MENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA 421
+E + +D + Y+ C C + + +A N G +
Sbjct: 7 LEQIRDID--GDFEFETYYSLSCHNCPDVVQALNLMAVL---NPRIKHTAIDGGTFQNEI 61
Query: 422 KQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
++ + P + K ++ R + ++A VD
Sbjct: 62 TER-NVMGVPAVFVNGK------EFGQGRMTLTEIVAKVD 94
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
catalytic domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 310
Score = 31.5 bits (70), Expect = 0.17
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 301 HEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNAS-EAVADIFNSQNLVT-LN 358
H R + + + GNG GN + S+ + ++
Sbjct: 225 HPHNDRGTAVA---AAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQID 281
Query: 359 RTGMENLARL 368
+ ++ + R
Sbjct: 282 FSNIDEIRRT 291
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 29.5 bits (65), Expect = 0.26
Identities = 8/89 (8%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Query: 375 WLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTI 433
++V P C +C + A + K+ + + + + + P I
Sbjct: 18 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKI 77
Query: 434 LFFPKHSSKPIKYPSERRDVDSLMAFVDA 462
+ + + + +
Sbjct: 78 VIQVN--GEDRVEFEGAYPEKMFLEKLLS 104
>d3byqa1 d.79.9.1 (A:2-192) Uncharacterized protein BB2672
{Bordetella bronchiseptica [TaxId: 518]}
Length = 191
Score = 30.5 bits (69), Expect = 0.27
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 165 IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQ 224
++ + D +EV + G+ E H +R L +A + +
Sbjct: 65 ELVDTLGKDNIEVYSKAAIVGVDGEME--HGAVWHEAGGWAMRSVLGEPKAMVPAVKAVA 122
Query: 225 SPGTRSEIPVVQVD 238
+ G R +PV +
Sbjct: 123 TAGYRMMVPVHYIH 136
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 29.9 bits (66), Expect = 0.34
Identities = 17/117 (14%), Positives = 30/117 (25%), Gaps = 4/117 (3%)
Query: 335 GNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY 394
G+G AVA L E L R+ + L+V WC CQ +
Sbjct: 19 GHGLATEQGAVARFRQKLESNGLPSALTERLQRI--ERRYRLLVAGEMWCPDCQINLAAL 76
Query: 395 VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 451
+ + + ++ ++ + ER
Sbjct: 77 DFAQRLQPNIELA--IISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERP 131
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 29.1 bits (64), Expect = 0.65
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV 408
L TL + + +P L+ +A WC C + G + A + +
Sbjct: 5 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANL 59
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 29.1 bits (64), Expect = 0.67
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 369 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADK 400
++P L+ ++ C C+ E DK
Sbjct: 26 LIGEKPTLIHFWSISCHLCKEAMPQVNEFRDK 57
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 27.6 bits (60), Expect = 1.2
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 372 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 431
+ P +V +APWC C+ + ELA + +G + ++ + D+ + + S P
Sbjct: 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAPGIATQYNIRSIP 73
Query: 432 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
T+LFF + + +L ++
Sbjct: 74 TVLFFKNG--ERKESIIGAVPKSTLTDSIE 101
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 28.5 bits (63), Expect = 1.4
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 370 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 429
+ +V +Y + C A+ S LA + VK K RA A +
Sbjct: 118 QKVTTIVVNIYEDGVRGCDALNSSLECLAAE--YPMVKFCKIRASNTG---AGDRFSSDV 172
Query: 430 FPTILFF 436
PT+L +
Sbjct: 173 LPTLLVY 179
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 27.5 bits (60), Expect = 1.5
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE 419
T + + E +V +A WC C+ + Y E + + D D+
Sbjct: 6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVF----IKVDVDEVS 61
Query: 420 YAKQKLQLGSFPTILFFPK 438
+K + S PT +
Sbjct: 62 EVTEKENITSMPTFKVYKN 80
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 28.7 bits (63), Expect = 1.8
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 102 EIMDRALEKFGNDIAIA---FSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFD 157
E+ + + I F G + ++ + TG+ R L+ G L D
Sbjct: 399 EVCEGYVYN-SIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEA---ELD 454
Query: 158 EV 159
++
Sbjct: 455 DI 456
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 28.2 bits (62), Expect = 2.2
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 117 IAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEV 159
I + A VA + AH G + +L+ G L + FDE
Sbjct: 415 IGYDAASKVA--KNAHKKGITLKESALELGVLTEKE---FDEW 452
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 28.3 bits (62), Expect = 2.3
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 152 TYRFFDEVEKHFGIRIEYMFP 172
T+ F+ + FG+ ++++
Sbjct: 50 THALFEHQLRKFGVEVDFIDM 70
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 26.7 bits (58), Expect = 2.6
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 422
E L + + + +V A WC C+ + + LA V + D D+ +
Sbjct: 19 EQLQKANESKTLVVVDFTASWCGPCRFIAPFF----ADLAKKLPNVLFLKVDTDELKSVA 74
Query: 423 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 461
+ + PT +F + K + D L + +
Sbjct: 75 SDWAIQAMPTFMFLKE--GKILDK-VVGAKKDELQSTIA 110
>d3eeqa1 c.151.1.1 (A:215-335) Cobalamin biosynthesis protein G,
CbiG {Sulfolobus solfataricus [TaxId: 2287]}
Length = 121
Score = 26.7 bits (59), Expect = 2.6
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 97 NASPLEIMD---RALEKFGNDI-AIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPET 152
+ EI D + LE+ I + + + A FR+ + +
Sbjct: 11 DVKMEEIRDGIYKVLERLNLKRERIGIIASIREEVKKIADEFNVRFRLVNEEEINNFMNP 70
Query: 153 YRFF-DEVEKHFGI 165
+ G+
Sbjct: 71 CLTPPSKTLIEVGL 84
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 27.8 bits (61), Expect = 2.8
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 117 IAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYR 154
I + A ++A + AH G + +L G L+ +
Sbjct: 413 IGYDKAAEIA--KKAHKEGLTLKAAALALGYLSEAEFD 448
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 27.6 bits (60), Expect = 3.4
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 102 EIMDRALEK-FGNDIAIAFSGAEDVA--LIEYAHLTGRPFRVFSLDTGRLNPETYRFFDE 158
E M +EK G AI + A L A+LTG R + G L E +E
Sbjct: 392 ERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQ---LNE 448
Query: 159 V 159
+
Sbjct: 449 I 449
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 26.3 bits (57), Expect = 3.5
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE 419
+E + + A WC C+ +E ++A V + D D
Sbjct: 14 YSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAY----EFPTVKFAKVDADNNS 69
Query: 420 YAKQKLQLGSFPTILFF 436
K ++ PT +
Sbjct: 70 EIVSKCRVLQLPTFIIA 86
>d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 207
Score = 26.8 bits (59), Expect = 5.3
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 107 ALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDE 158
++E+ N + E++ I A L + +D PE + E
Sbjct: 131 SIERIANILIAKIINPENIVKINAALLRDESICIDGIDVNVNFPENIKVNSE 182
>d2qtpa1 d.79.9.1 (A:3-171) Uncharacterized protein SPO0826
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 169
Score = 26.2 bits (58), Expect = 5.5
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 172 PDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSE 231
P+ E G E + PLR+A++ A + +K SPG +
Sbjct: 71 PEQAESYGKSAMVGENGELEHA-AAILHPKLGAPLRKAVEKGAALVPSSKKMGSPGQVLD 129
Query: 232 IPVVQVD 238
+P+ D
Sbjct: 130 VPLGHKD 136
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.4 bits (58), Expect = 6.8
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVEL--ADKLAGNGV---KVGKF-RA 413
G E +ARL H+ + + EL +K A G K G F A
Sbjct: 34 VGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA 93
Query: 414 DG 415
DG
Sbjct: 94 DG 95
>d1j27a_ d.58.50.1 (A:) Hypothetical protein TT1725 {Thermus
thermophilus [TaxId: 274]}
Length = 98
Score = 25.0 bits (55), Expect = 8.2
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 30 IGSFRLVDRAHVASTSLSQRRSLVRPLNAEPKR--NDSVVPLA-------ATLATPEVA- 79
+G + R + SL ++R+L++P K S L + +
Sbjct: 5 LGLYTA--RLETPARSLKEKRALIKPALERLKARFPVSAARLYGLDAWGYEVVGFTLLGN 62
Query: 80 EKVEGEEDFEQFAKELENASPLEIMDRALE 109
+ EE A+ L A ++
Sbjct: 63 DPAWVEETMRAAARFLAEAGGFQVALEEFR 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,736,933
Number of extensions: 81621
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 52
Length of query: 464
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 376
Effective length of database: 1,199,356
Effective search space: 450957856
Effective search space used: 450957856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)