Query 012416
Match_columns 464
No_of_seqs 323 out of 2533
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:25:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 5.4E-60 1.2E-64 494.2 35.0 329 22-449 2-345 (408)
2 COG4536 CorB Putative Mg2+ and 100.0 1.1E-60 2.4E-65 477.3 23.5 338 13-447 1-356 (423)
3 PRK11573 hypothetical protein; 100.0 3.3E-59 7.2E-64 488.6 32.9 326 25-449 2-346 (413)
4 COG1253 TlyC Hemolysins and re 100.0 2.3E-55 5E-60 462.2 34.9 341 14-453 3-367 (429)
5 PRK15094 magnesium/cobalt effl 100.0 1.1E-29 2.4E-34 255.0 18.4 199 156-450 24-225 (292)
6 COG4535 CorC Putative Mg2+ and 100.0 1.6E-29 3.4E-34 240.1 12.9 202 151-449 19-224 (293)
7 KOG2118 Predicted membrane pro 100.0 3.1E-30 6.8E-35 274.7 7.6 421 5-433 3-435 (498)
8 PF01595 DUF21: Domain of unkn 100.0 6.9E-27 1.5E-31 217.6 19.5 168 18-193 3-183 (183)
9 COG3448 CBS-domain-containing 99.7 1.1E-16 2.5E-21 156.9 18.7 137 166-310 202-354 (382)
10 TIGR00400 mgtE Mg2+ transporte 99.7 1.7E-16 3.8E-21 168.5 15.2 135 166-310 89-234 (449)
11 TIGR01302 IMP_dehydrog inosine 99.6 3.4E-15 7.3E-20 158.7 15.5 133 165-310 43-183 (450)
12 COG2524 Predicted transcriptio 99.6 1.1E-15 2.4E-20 147.7 9.6 109 197-310 163-273 (294)
13 COG4109 Predicted transcriptio 99.6 2.3E-15 5E-20 150.8 11.9 113 194-310 171-288 (432)
14 PRK05567 inosine 5'-monophosph 99.5 3.2E-13 6.9E-18 145.0 15.9 132 165-310 50-187 (486)
15 PRK10892 D-arabinose 5-phospha 99.5 1.8E-13 3.8E-18 139.3 11.9 105 204-310 200-308 (326)
16 cd04603 CBS_pair_KefB_assoc Th 99.5 3.9E-13 8.4E-18 114.3 12.1 92 217-310 2-95 (111)
17 cd04641 CBS_pair_28 The CBS do 99.5 6E-13 1.3E-17 114.4 11.6 92 217-310 2-104 (120)
18 cd04605 CBS_pair_MET2_assoc Th 99.4 8.8E-13 1.9E-17 110.9 11.8 92 217-310 3-94 (110)
19 cd04619 CBS_pair_6 The CBS dom 99.4 8.7E-13 1.9E-17 112.5 11.6 92 217-310 2-98 (114)
20 PRK11543 gutQ D-arabinose 5-ph 99.4 3.5E-13 7.6E-18 136.6 10.7 104 205-310 196-302 (321)
21 cd04623 CBS_pair_10 The CBS do 99.4 1.1E-12 2.4E-17 110.3 11.8 92 217-310 2-98 (113)
22 cd04626 CBS_pair_13 The CBS do 99.4 9.2E-13 2E-17 111.1 11.1 92 217-310 2-96 (111)
23 cd04618 CBS_pair_5 The CBS dom 99.4 1.3E-12 2.7E-17 109.9 11.8 80 217-310 2-81 (98)
24 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.3E-12 2.8E-17 110.0 11.5 90 217-310 3-92 (108)
25 cd04630 CBS_pair_17 The CBS do 99.4 1.7E-12 3.6E-17 110.4 12.1 93 217-310 2-99 (114)
26 COG3620 Predicted transcriptio 99.4 9.4E-13 2E-17 119.3 10.7 119 185-310 39-167 (187)
27 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.5E-12 3.3E-17 110.7 11.5 92 217-310 2-97 (115)
28 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.4E-12 3.1E-17 111.9 11.2 92 217-310 3-108 (124)
29 cd04590 CBS_pair_CorC_HlyC_ass 99.4 1.8E-12 3.9E-17 109.2 11.0 93 216-310 1-95 (111)
30 cd04624 CBS_pair_11 The CBS do 99.4 1.9E-12 4.2E-17 109.2 11.1 92 217-310 2-96 (112)
31 cd04631 CBS_pair_18 The CBS do 99.4 2.3E-12 4.9E-17 110.8 11.1 93 217-310 2-109 (125)
32 cd04639 CBS_pair_26 The CBS do 99.4 2.2E-12 4.7E-17 108.7 10.7 92 217-310 2-95 (111)
33 COG2239 MgtE Mg/Co/Ni transpor 99.4 2.8E-12 6.1E-17 135.5 13.7 128 167-310 103-235 (451)
34 cd04642 CBS_pair_29 The CBS do 99.4 3E-12 6.4E-17 111.1 11.5 92 217-310 2-110 (126)
35 cd04803 CBS_pair_15 The CBS do 99.4 3.5E-12 7.5E-17 109.2 11.3 92 217-310 2-106 (122)
36 cd04627 CBS_pair_14 The CBS do 99.4 3.3E-12 7.2E-17 110.2 11.2 93 217-310 2-107 (123)
37 cd04607 CBS_pair_NTP_transfera 99.4 4.5E-12 9.6E-17 107.5 11.7 91 218-310 4-97 (113)
38 cd04643 CBS_pair_30 The CBS do 99.4 3.6E-12 7.9E-17 108.0 11.0 90 217-310 2-100 (116)
39 PRK07807 inosine 5-monophospha 99.4 3.1E-12 6.6E-17 136.8 12.8 102 203-310 86-187 (479)
40 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 5.5E-12 1.2E-16 105.5 11.5 91 217-310 3-93 (109)
41 cd04621 CBS_pair_8 The CBS dom 99.4 3.9E-12 8.5E-17 112.8 11.2 92 217-310 2-120 (135)
42 cd04599 CBS_pair_GGDEF_assoc2 99.4 6.1E-12 1.3E-16 104.7 11.6 89 217-310 2-90 (105)
43 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 6.9E-12 1.5E-16 104.7 11.8 89 217-310 2-90 (106)
44 cd04801 CBS_pair_M50_like This 99.4 2.7E-12 5.9E-17 108.9 9.5 92 217-310 2-98 (114)
45 PRK01862 putative voltage-gate 99.4 2.8E-12 6.1E-17 140.2 12.0 104 203-310 444-551 (574)
46 cd04635 CBS_pair_22 The CBS do 99.4 5.6E-12 1.2E-16 107.9 11.3 92 217-310 2-106 (122)
47 cd04617 CBS_pair_4 The CBS dom 99.4 4.8E-12 1E-16 108.6 10.8 92 217-310 2-99 (118)
48 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 7.4E-12 1.6E-16 105.0 11.7 91 217-310 2-95 (111)
49 cd04601 CBS_pair_IMPDH This cd 99.4 7.7E-12 1.7E-16 104.8 11.7 91 217-310 3-94 (110)
50 cd04640 CBS_pair_27 The CBS do 99.4 4.1E-12 8.9E-17 110.4 10.3 92 217-310 2-109 (126)
51 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 8.4E-12 1.8E-16 104.7 11.5 91 217-310 2-95 (111)
52 cd04636 CBS_pair_23 The CBS do 99.4 6.2E-12 1.3E-16 110.0 11.0 92 217-310 2-117 (132)
53 cd04588 CBS_pair_CAP-ED_DUF294 99.3 9.3E-12 2E-16 104.6 11.7 91 217-310 2-94 (110)
54 cd04610 CBS_pair_ParBc_assoc T 99.3 1.2E-11 2.5E-16 103.3 12.1 89 217-310 3-91 (107)
55 cd04595 CBS_pair_DHH_polyA_Pol 99.3 9.1E-12 2E-16 104.9 11.5 91 217-310 3-95 (110)
56 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 7.5E-12 1.6E-16 105.3 10.9 92 217-310 2-97 (114)
57 cd04629 CBS_pair_16 The CBS do 99.3 5.1E-12 1.1E-16 106.7 9.7 92 217-310 2-99 (114)
58 cd04615 CBS_pair_2 The CBS dom 99.3 9.8E-12 2.1E-16 105.0 11.3 91 218-310 3-97 (113)
59 cd04589 CBS_pair_CAP-ED_DUF294 99.3 1E-11 2.3E-16 104.7 11.4 91 217-310 2-96 (111)
60 cd04585 CBS_pair_ACT_assoc2 Th 99.3 1.3E-11 2.7E-16 105.0 11.4 91 217-310 2-106 (122)
61 cd04800 CBS_pair_CAP-ED_DUF294 99.3 1.5E-11 3.4E-16 103.4 11.6 91 217-310 2-96 (111)
62 cd04594 CBS_pair_EriC_assoc_ar 99.3 1.8E-11 3.8E-16 102.7 11.9 86 219-310 4-89 (104)
63 cd04606 CBS_pair_Mg_transporte 99.3 9.4E-12 2E-16 104.9 10.2 86 221-310 2-92 (109)
64 cd04632 CBS_pair_19 The CBS do 99.3 1.2E-11 2.6E-16 107.3 11.2 91 217-309 2-109 (128)
65 cd04586 CBS_pair_BON_assoc Thi 99.3 7.9E-12 1.7E-16 109.7 10.1 92 217-310 3-120 (135)
66 cd04638 CBS_pair_25 The CBS do 99.3 2.1E-11 4.7E-16 102.1 12.1 90 217-310 2-91 (106)
67 cd04602 CBS_pair_IMPDH_2 This 99.3 1.5E-11 3.1E-16 104.8 11.2 92 217-310 3-98 (114)
68 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 1.2E-11 2.6E-16 104.2 10.5 92 217-310 3-98 (114)
69 cd04587 CBS_pair_CAP-ED_DUF294 99.3 1.5E-11 3.2E-16 103.7 10.9 91 217-310 2-97 (113)
70 cd04608 CBS_pair_PALP_assoc Th 99.3 3.8E-12 8.2E-17 111.2 7.3 92 217-310 3-107 (124)
71 cd04614 CBS_pair_1 The CBS dom 99.3 2.1E-11 4.5E-16 101.8 11.5 79 217-310 2-80 (96)
72 cd04637 CBS_pair_24 The CBS do 99.3 1.5E-11 3.2E-16 105.5 10.8 91 217-310 2-106 (122)
73 cd04591 CBS_pair_EriC_assoc_eu 99.3 1.6E-11 3.4E-16 104.1 10.6 87 216-310 2-90 (105)
74 cd04620 CBS_pair_7 The CBS dom 99.3 2E-11 4.4E-16 103.5 10.8 91 217-310 2-99 (115)
75 cd04802 CBS_pair_3 The CBS dom 99.3 3.5E-11 7.6E-16 101.4 11.7 91 217-310 2-97 (112)
76 TIGR01137 cysta_beta cystathio 99.3 1.9E-11 4E-16 129.8 12.2 105 197-309 328-436 (454)
77 PLN02274 inosine-5'-monophosph 99.3 4E-11 8.6E-16 129.1 14.7 136 166-310 64-204 (505)
78 cd04622 CBS_pair_9 The CBS dom 99.3 4.5E-11 9.8E-16 100.7 11.9 91 217-310 2-97 (113)
79 PRK07107 inosine 5-monophospha 99.3 2E-11 4.3E-16 131.2 11.8 112 191-310 87-202 (502)
80 cd04633 CBS_pair_20 The CBS do 99.3 4E-11 8.6E-16 102.5 10.9 91 217-310 2-106 (121)
81 cd04625 CBS_pair_12 The CBS do 99.3 5.3E-11 1.1E-15 100.3 11.5 91 217-310 2-97 (112)
82 cd04584 CBS_pair_ACT_assoc Thi 99.3 3.6E-11 7.9E-16 102.5 10.5 92 217-310 2-106 (121)
83 cd04609 CBS_pair_PALP_assoc2 T 99.3 4.9E-11 1.1E-15 99.6 10.8 89 217-310 2-94 (110)
84 PTZ00314 inosine-5'-monophosph 99.2 6.8E-11 1.5E-15 127.1 13.2 133 165-310 59-200 (495)
85 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 7.4E-11 1.6E-15 126.1 13.1 101 203-310 85-185 (475)
86 cd02205 CBS_pair The CBS domai 99.2 1.1E-10 2.4E-15 96.4 11.2 92 217-310 2-97 (113)
87 cd04598 CBS_pair_GGDEF_assoc T 99.2 6.9E-11 1.5E-15 100.7 9.8 91 217-310 2-103 (119)
88 TIGR00393 kpsF KpsF/GutQ famil 99.2 5E-11 1.1E-15 117.6 10.0 102 206-310 155-259 (268)
89 COG0517 FOG: CBS domain [Gener 99.2 2.1E-10 4.6E-15 97.0 11.7 96 210-310 3-102 (117)
90 cd04634 CBS_pair_21 The CBS do 99.2 1.4E-10 3E-15 103.5 10.9 91 217-310 2-128 (143)
91 COG2905 Predicted signal-trans 99.1 2.6E-10 5.6E-15 120.9 8.7 104 203-310 146-253 (610)
92 cd04592 CBS_pair_EriC_assoc_eu 99.0 2.3E-09 5E-14 95.5 9.0 93 217-311 2-118 (133)
93 PRK14869 putative manganese-de 98.9 8.8E-09 1.9E-13 112.2 12.9 56 205-264 67-122 (546)
94 PF00571 CBS: CBS domain CBS d 98.6 7.8E-08 1.7E-12 72.3 6.6 38 273-310 1-38 (57)
95 PF00571 CBS: CBS domain CBS d 98.6 6.2E-08 1.3E-12 72.9 4.4 55 208-266 1-55 (57)
96 PRK10070 glycine betaine trans 98.5 9E-07 1.9E-11 93.2 12.7 101 206-310 274-375 (400)
97 KOG1764 5'-AMP-activated prote 98.4 1.7E-06 3.6E-11 90.6 11.2 92 217-310 238-341 (381)
98 TIGR01186 proV glycine betaine 98.3 5.1E-06 1.1E-10 86.5 13.2 88 219-310 253-340 (363)
99 KOG0474 Cl- channel CLC-7 and 98.3 6.8E-07 1.5E-11 96.1 5.7 105 203-310 579-729 (762)
100 KOG2550 IMP dehydrogenase/GMP 98.2 3.3E-06 7.3E-11 87.1 7.7 137 165-310 71-210 (503)
101 TIGR00400 mgtE Mg2+ transporte 98.0 4.1E-06 8.8E-11 89.5 3.3 99 204-308 193-291 (449)
102 COG2524 Predicted transcriptio 97.9 3.4E-05 7.4E-10 75.6 7.4 41 270-310 171-211 (294)
103 cd04603 CBS_pair_KefB_assoc Th 97.8 3.2E-05 6.9E-10 65.4 5.8 56 205-264 55-110 (111)
104 cd04604 CBS_pair_KpsF_GutQ_ass 97.7 6.3E-05 1.4E-09 63.0 6.2 59 202-264 55-113 (114)
105 cd04801 CBS_pair_M50_like This 97.7 6.9E-05 1.5E-09 63.2 6.0 58 205-264 56-113 (114)
106 cd04597 CBS_pair_DRTGG_assoc2 97.7 9E-05 2E-09 63.6 6.8 55 206-264 58-112 (113)
107 cd04619 CBS_pair_6 The CBS dom 97.7 8.3E-05 1.8E-09 63.1 5.7 57 204-264 57-113 (114)
108 cd04617 CBS_pair_4 The CBS dom 97.7 0.00011 2.3E-09 62.7 6.4 60 204-264 56-117 (118)
109 PRK07107 inosine 5-monophospha 97.7 0.00015 3.2E-09 78.6 8.8 103 203-310 158-263 (502)
110 KOG0475 Cl- channel CLC-3 and 97.6 0.00023 4.9E-09 77.2 9.9 102 208-310 545-678 (696)
111 PRK14869 putative manganese-de 97.6 7.1E-05 1.5E-09 81.7 5.9 103 204-309 244-375 (546)
112 cd04597 CBS_pair_DRTGG_assoc2 97.6 0.00013 2.9E-09 62.6 5.9 40 271-310 58-97 (113)
113 cd04607 CBS_pair_NTP_transfera 97.5 0.00019 4.1E-09 60.4 5.8 56 205-264 57-112 (113)
114 PRK07807 inosine 5-monophospha 97.5 0.00027 5.8E-09 76.2 8.0 95 206-309 148-246 (479)
115 cd04585 CBS_pair_ACT_assoc2 Th 97.5 0.00018 3.9E-09 60.7 5.4 58 203-264 64-121 (122)
116 cd04600 CBS_pair_HPP_assoc Thi 97.5 0.00022 4.8E-09 60.8 5.7 58 203-264 66-123 (124)
117 cd04618 CBS_pair_5 The CBS dom 97.4 0.00027 5.9E-09 59.1 5.9 46 218-264 52-97 (98)
118 KOG1764 5'-AMP-activated prote 97.4 0.00082 1.8E-08 70.5 10.7 97 213-310 159-268 (381)
119 cd04640 CBS_pair_27 The CBS do 97.4 0.00016 3.5E-09 62.5 4.4 60 204-264 62-125 (126)
120 cd04625 CBS_pair_12 The CBS do 97.4 0.00027 5.9E-09 59.1 5.7 55 205-264 57-111 (112)
121 cd04620 CBS_pair_7 The CBS dom 97.4 0.00029 6.3E-09 59.3 5.8 56 205-264 57-114 (115)
122 cd04630 CBS_pair_17 The CBS do 97.4 0.00028 6.1E-09 59.6 5.6 56 204-264 58-113 (114)
123 cd04610 CBS_pair_ParBc_assoc T 97.4 0.0003 6.6E-09 58.2 5.6 56 205-264 51-106 (107)
124 COG3448 CBS-domain-containing 97.4 0.00015 3.3E-09 72.4 4.3 41 270-310 244-284 (382)
125 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.00043 9.4E-09 57.3 6.4 54 207-264 52-105 (106)
126 cd04596 CBS_pair_DRTGG_assoc T 97.4 0.00032 6.9E-09 58.6 5.5 57 204-264 51-107 (108)
127 PRK10892 D-arabinose 5-phospha 97.4 0.00028 6.1E-09 71.9 5.9 58 203-265 266-323 (326)
128 cd04627 CBS_pair_14 The CBS do 97.3 0.00039 8.4E-09 59.6 5.9 52 208-263 70-121 (123)
129 PRK05567 inosine 5'-monophosph 97.3 0.00065 1.4E-08 73.5 8.9 100 205-310 146-248 (486)
130 cd04623 CBS_pair_10 The CBS do 97.3 0.00041 8.9E-09 57.8 5.8 55 205-264 58-112 (113)
131 TIGR01303 IMP_DH_rel_1 IMP deh 97.3 0.00071 1.5E-08 72.9 8.9 98 205-309 145-244 (475)
132 cd04587 CBS_pair_CAP-ED_DUF294 97.3 0.00035 7.6E-09 58.4 5.3 55 206-264 58-112 (113)
133 cd04615 CBS_pair_2 The CBS dom 97.3 0.00044 9.5E-09 57.9 5.7 57 204-264 56-112 (113)
134 cd04622 CBS_pair_9 The CBS dom 97.3 0.00047 1E-08 57.6 5.7 55 206-264 58-112 (113)
135 cd04631 CBS_pair_18 The CBS do 97.3 0.00043 9.3E-09 59.1 5.4 57 204-264 68-124 (125)
136 PTZ00314 inosine-5'-monophosph 97.3 0.001 2.2E-08 72.2 9.2 105 204-312 157-264 (495)
137 cd04621 CBS_pair_8 The CBS dom 97.3 0.00052 1.1E-08 60.6 5.9 56 204-264 79-134 (135)
138 COG0517 FOG: CBS domain [Gener 97.3 0.001 2.2E-08 55.8 7.4 53 207-263 63-117 (117)
139 cd04606 CBS_pair_Mg_transporte 97.2 0.00053 1.2E-08 57.4 5.5 57 205-265 52-108 (109)
140 smart00116 CBS Domain in cysta 97.2 0.0009 2E-08 46.3 5.8 31 280-310 1-31 (49)
141 cd04613 CBS_pair_SpoIVFB_EriC_ 97.2 0.00052 1.1E-08 57.2 5.3 57 205-264 57-113 (114)
142 cd04601 CBS_pair_IMPDH This cd 97.2 0.00064 1.4E-08 56.4 5.8 56 205-264 53-109 (110)
143 cd04602 CBS_pair_IMPDH_2 This 97.2 0.00048 1E-08 58.2 5.1 58 205-264 56-113 (114)
144 cd04593 CBS_pair_EriC_assoc_ba 97.2 0.00069 1.5E-08 57.1 6.1 56 206-264 58-114 (115)
145 cd04635 CBS_pair_22 The CBS do 97.2 0.00055 1.2E-08 58.1 5.4 57 204-264 65-121 (122)
146 PLN02274 inosine-5'-monophosph 97.2 0.0012 2.6E-08 71.7 9.2 105 204-312 161-271 (505)
147 PRK11543 gutQ D-arabinose 5-ph 97.2 0.00074 1.6E-08 68.6 7.2 58 204-265 261-318 (321)
148 cd04586 CBS_pair_BON_assoc Thi 97.2 0.00055 1.2E-08 59.8 5.4 57 203-264 78-134 (135)
149 cd04633 CBS_pair_20 The CBS do 97.2 0.00051 1.1E-08 58.3 5.1 57 203-264 64-120 (121)
150 cd04803 CBS_pair_15 The CBS do 97.2 0.00067 1.5E-08 57.6 5.8 57 204-264 65-121 (122)
151 cd04636 CBS_pair_23 The CBS do 97.2 0.00068 1.5E-08 58.9 5.8 56 204-264 76-131 (132)
152 cd04611 CBS_pair_PAS_GGDEF_DUF 97.2 0.0008 1.7E-08 55.9 5.9 57 204-264 54-110 (111)
153 cd04594 CBS_pair_EriC_assoc_ar 97.2 0.00089 1.9E-08 55.7 6.1 54 206-264 50-103 (104)
154 cd04589 CBS_pair_CAP-ED_DUF294 97.2 0.0008 1.7E-08 56.2 5.8 56 204-264 55-110 (111)
155 cd04595 CBS_pair_DHH_polyA_Pol 97.2 0.00082 1.8E-08 56.1 5.8 56 204-264 54-109 (110)
156 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.00081 1.8E-08 55.7 5.7 55 206-264 54-108 (109)
157 cd04612 CBS_pair_SpoIVFB_EriC_ 97.2 0.00092 2E-08 55.5 6.0 55 206-264 56-110 (111)
158 cd04584 CBS_pair_ACT_assoc Thi 97.2 0.00073 1.6E-08 57.2 5.5 57 203-264 64-120 (121)
159 cd04641 CBS_pair_28 The CBS do 97.1 0.0009 1.9E-08 57.1 6.0 52 209-264 68-119 (120)
160 cd04643 CBS_pair_30 The CBS do 97.1 0.00059 1.3E-08 57.3 4.8 55 204-264 61-115 (116)
161 cd04599 CBS_pair_GGDEF_assoc2 97.1 0.00088 1.9E-08 55.2 5.7 55 205-264 50-104 (105)
162 cd04629 CBS_pair_16 The CBS do 97.1 0.00071 1.5E-08 56.6 5.2 55 205-264 59-113 (114)
163 cd04639 CBS_pair_26 The CBS do 97.1 0.00076 1.6E-08 56.3 5.3 55 206-264 56-110 (111)
164 cd04626 CBS_pair_13 The CBS do 97.1 0.00099 2.2E-08 55.7 5.7 55 205-264 56-110 (111)
165 cd04802 CBS_pair_3 The CBS dom 97.1 0.0012 2.6E-08 55.2 5.9 56 204-264 56-111 (112)
166 smart00116 CBS Domain in cysta 97.0 0.0011 2.4E-08 45.9 4.6 46 218-265 2-47 (49)
167 cd04800 CBS_pair_CAP-ED_DUF294 97.0 0.0013 2.8E-08 54.9 5.5 55 205-264 56-110 (111)
168 cd04614 CBS_pair_1 The CBS dom 97.0 0.0013 2.9E-08 54.5 5.5 45 218-264 51-95 (96)
169 cd04605 CBS_pair_MET2_assoc Th 97.0 0.0022 4.7E-08 53.4 6.6 54 207-264 56-109 (110)
170 cd04637 CBS_pair_24 The CBS do 97.0 0.0011 2.5E-08 56.3 4.9 55 206-264 67-121 (122)
171 cd04632 CBS_pair_19 The CBS do 97.0 0.0014 3E-08 56.4 5.4 58 204-264 69-127 (128)
172 cd04588 CBS_pair_CAP-ED_DUF294 96.9 0.0017 3.7E-08 54.0 5.7 55 206-264 55-109 (110)
173 cd04592 CBS_pair_EriC_assoc_eu 96.9 0.0031 6.7E-08 56.1 7.4 31 280-310 2-32 (133)
174 cd04590 CBS_pair_CorC_HlyC_ass 96.9 0.0016 3.5E-08 54.3 5.3 54 206-264 57-110 (111)
175 cd04608 CBS_pair_PALP_assoc Th 96.9 0.0045 9.7E-08 53.7 8.1 32 279-310 2-33 (124)
176 TIGR03415 ABC_choXWV_ATP choli 96.9 0.0033 7.1E-08 66.1 8.5 92 203-310 271-363 (382)
177 cd04624 CBS_pair_11 The CBS do 96.9 0.0021 4.6E-08 53.7 5.8 56 205-264 56-111 (112)
178 COG3620 Predicted transcriptio 96.9 0.0012 2.7E-08 60.7 4.5 39 272-310 66-104 (187)
179 cd04642 CBS_pair_29 The CBS do 96.9 0.0021 4.5E-08 55.4 5.8 51 210-264 75-125 (126)
180 cd04591 CBS_pair_EriC_assoc_eu 96.8 0.0029 6.3E-08 53.2 5.9 49 211-264 56-104 (105)
181 TIGR01137 cysta_beta cystathio 96.7 0.0035 7.6E-08 66.7 7.4 41 270-310 334-374 (454)
182 PRK01862 putative voltage-gate 96.7 0.0028 6.1E-08 69.8 6.4 59 205-266 511-570 (574)
183 cd04598 CBS_pair_GGDEF_assoc T 96.7 0.003 6.4E-08 53.4 5.0 57 204-264 59-118 (119)
184 cd04634 CBS_pair_21 The CBS do 96.6 0.0039 8.4E-08 55.4 5.5 56 204-264 87-142 (143)
185 TIGR00393 kpsF KpsF/GutQ famil 96.5 0.0056 1.2E-07 60.3 6.5 40 271-310 155-195 (268)
186 PRK15094 magnesium/cobalt effl 96.5 0.0059 1.3E-07 61.9 6.5 86 207-298 134-228 (292)
187 cd02205 CBS_pair The CBS domai 96.4 0.0099 2.1E-07 48.4 6.5 53 208-264 60-112 (113)
188 cd04638 CBS_pair_25 The CBS do 96.4 0.0067 1.5E-07 50.2 5.6 54 206-264 52-105 (106)
189 TIGR01302 IMP_dehydrog inosine 96.4 0.0051 1.1E-07 65.9 5.9 60 204-266 141-200 (450)
190 COG2905 Predicted signal-trans 96.3 0.0053 1.1E-07 66.4 5.6 70 192-266 197-269 (610)
191 cd04609 CBS_pair_PALP_assoc2 T 96.3 0.0058 1.3E-07 50.5 4.8 54 205-264 56-109 (110)
192 COG4175 ProV ABC-type proline/ 96.3 0.0097 2.1E-07 60.7 6.7 103 194-310 262-365 (386)
193 TIGR03520 GldE gliding motilit 96.2 0.014 3.1E-07 61.8 8.3 90 205-299 254-350 (408)
194 COG2239 MgtE Mg/Co/Ni transpor 95.2 0.014 3.1E-07 62.5 3.2 62 202-267 192-253 (451)
195 COG4109 Predicted transcriptio 95.0 0.027 5.8E-07 58.0 4.3 59 204-266 247-305 (432)
196 TIGR01186 proV glycine betaine 93.4 0.093 2E-06 54.9 4.7 57 206-267 302-358 (363)
197 KOG2550 IMP dehydrogenase/GMP 92.5 0.12 2.6E-06 54.2 3.8 60 202-265 167-226 (503)
198 PRK11573 hypothetical protein; 91.9 0.49 1.1E-05 50.3 7.7 83 210-298 259-350 (413)
199 PRK10070 glycine betaine trans 91.0 0.36 7.9E-06 51.1 5.6 59 205-268 336-394 (400)
200 COG1253 TlyC Hemolysins and re 88.4 1.3 2.7E-05 47.4 7.3 41 270-310 205-247 (429)
201 KOG0476 Cl- channel CLC-2 and 86.1 2.3 4.9E-05 48.1 7.6 60 204-266 586-646 (931)
202 COG1125 OpuBA ABC-type proline 85.1 2.1 4.6E-05 43.0 6.2 83 218-310 189-292 (309)
203 COG4536 CorB Putative Mg2+ and 75.1 11 0.00024 39.7 7.7 91 206-298 265-362 (423)
204 TIGR03415 ABC_choXWV_ATP choli 65.4 7.2 0.00016 41.2 4.1 55 205-266 325-379 (382)
205 KOG0474 Cl- channel CLC-7 and 62.3 9.3 0.0002 42.6 4.2 54 208-265 692-745 (762)
206 COG1125 OpuBA ABC-type proline 60.7 10 0.00022 38.3 3.8 59 204-264 247-307 (309)
207 COG4535 CorC Putative Mg2+ and 56.4 36 0.00078 33.9 6.7 88 206-299 133-229 (293)
208 KOG0476 Cl- channel CLC-2 and 53.2 18 0.00038 41.3 4.5 41 270-310 587-627 (931)
209 PF01595 DUF21: Domain of unkn 40.5 2.8E+02 0.0061 25.1 13.9 9 114-122 111-119 (183)
210 COG4175 ProV ABC-type proline/ 39.7 28 0.00061 36.2 3.3 48 217-267 336-383 (386)
211 KOG0475 Cl- channel CLC-3 and 37.7 44 0.00095 37.5 4.5 53 208-265 641-693 (696)
212 COG2216 KdpB High-affinity K+ 36.9 47 0.001 36.7 4.5 34 230-265 417-450 (681)
213 PF10909 DUF2682: Protein of u 26.3 39 0.00084 27.6 1.4 47 401-460 26-76 (77)
214 COG3763 Uncharacterized protei 24.6 2.2E+02 0.0048 23.0 5.3 36 13-53 2-37 (71)
215 PF15284 PAGK: Phage-encoded v 22.0 1.1E+02 0.0024 23.9 3.1 21 18-38 7-27 (61)
216 TIGR03278 methan_mark_10 putat 20.9 3.2E+02 0.0069 29.2 7.4 50 252-307 314-363 (404)
217 PF01036 Bac_rhodopsin: Bacter 20.5 7.6E+02 0.016 23.6 9.5 41 111-153 141-182 (222)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=5.4e-60 Score=494.15 Aligned_cols=329 Identities=27% Similarity=0.443 Sum_probs=283.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHHHHh----hh
Q 012416 22 IALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDK----LV 97 (464)
Q Consensus 22 lillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~~~~----~~ 97 (464)
++|+++||||||+|+|++|+++.++++++++|++ +|+++++++++|+++|+|+|+|||++|++++.++.. ++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999885 577899999999999999999999999876644322 22
Q ss_pred hh----H----HHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCcccc
Q 012416 98 PP----W----AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML---GKGHAVL 166 (464)
Q Consensus 98 ~~----~----~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l~---g~~~~~~ 166 (464)
+. + +++++.|+++++|||++||++|.+||++++++++||+++++++++|++|+++++++++. |... ..
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 21 1 23455678899999999999999999999999999999999999999999999987654 4432 45
Q ss_pred CCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEE
Q 012416 167 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY 246 (464)
Q Consensus 167 ~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVv 246 (464)
+|++||+.+++. ++++| ++++|++|++|+++|++++|+|+||||.++++++.+++++ ++++.+.+++|||+|||
T Consensus 157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~ 230 (408)
T TIGR03520 157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY 230 (408)
T ss_pred CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence 899999999984 34456 6899999999999999999999999999999999999998 99999999999999999
Q ss_pred ecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCccccccccccCCCC
Q 012416 247 SGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (464)
Q Consensus 247 d~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~~~~~~~~~~~~~ 326 (464)
+++.|+++|+|+.||++....++..++.++ ++++.+||+++++.++++.|++++.|+++|+|||
T Consensus 231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~--------------- 294 (408)
T TIGR03520 231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY--------------- 294 (408)
T ss_pred cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC---------------
Confidence 987789999999999986544333457887 5789999999999999999999999999999996
Q ss_pred CCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCCCCCCceEEEEeHH
Q 012416 327 PRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITME 406 (464)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vt~~ 406 (464)
|.++||||+|
T Consensus 295 ----------------------------------------------------------------------G~~~GiVT~e 304 (408)
T TIGR03520 295 ----------------------------------------------------------------------GGTSGLVTLE 304 (408)
T ss_pred ----------------------------------------------------------------------CCEEEEEEHH
Confidence 5789999999
Q ss_pred HHHHHHHhccccccchhhHhhhhhcccccEEEEEehhhHHhHH
Q 012416 407 DVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCMWN 449 (464)
Q Consensus 407 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (464)
|++|++. |||.||+|.......+++. ++|++.|.+-+--.|
T Consensus 305 Dileeiv-gei~de~d~~~~~i~~~~~-~~~~v~G~~~l~~l~ 345 (408)
T TIGR03520 305 DIIEEIV-GDISDEFDDEDLIYSKIDD-NNYVFEGKTSLKDFY 345 (408)
T ss_pred HHHHHHh-CCCCCcCCcCccceEEeCC-CeEEEEeccCHHHHH
Confidence 9999999 8999998865444455555 599999987665443
No 2
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-60 Score=477.26 Aligned_cols=338 Identities=26% Similarity=0.406 Sum_probs=297.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHH
Q 012416 13 MFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIF 92 (464)
Q Consensus 13 ~~w~~lllilillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~ 92 (464)
+.|..++++++|+++||||||+|+|++++||.|++.++++|++ +|+++.+++++|++++++++||||++|++.+.+
T Consensus 1 ~~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasal 76 (423)
T COG4536 1 PTWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASAL 76 (423)
T ss_pred CcchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHH
Confidence 3588888889999999999999999999999999999999996 588899999999999999999999999876544
Q ss_pred HH----hhhhhH---HHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---hCCC
Q 012416 93 LD----KLVPPW---AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKG 162 (464)
Q Consensus 93 ~~----~~~~~~---~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l---~g~~ 162 (464)
.. .+++.+ +|.++.|+++++|+|++||++|+.|||+++...++++.++.++|+|++|+++++++.+ +|..
T Consensus 77 aT~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 77 ATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 32 223322 4567778999999999999999999999999999999999999999999999998764 5543
Q ss_pred ----ccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHc
Q 012416 163 ----HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM 238 (464)
Q Consensus 163 ----~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~ 238 (464)
.+...++||+|.+++. ++++|...+++++|+.+++++.+++|.|||+||.++..++.|++.+ ++.+.+.+.
T Consensus 157 ~~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s 231 (423)
T COG4536 157 LDQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHS 231 (423)
T ss_pred cccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhC
Confidence 2457899999999984 5556778788999999999999999999999999999999999998 999999999
Q ss_pred CCcEeeEEecCCCcEEEEEEcchhcccccccc-c---ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q 012416 239 GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-V---PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEK 314 (464)
Q Consensus 239 ~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~-~---~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~ 314 (464)
.|+|+|||.++.|+++|++|.||++++..+.+ . ++..+ ..+|+|||+++++.+.|..|++++.|+++|||||
T Consensus 232 ~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY--- 307 (423)
T COG4536 232 PHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY--- 307 (423)
T ss_pred CCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc---
Confidence 99999999999999999999999999876543 2 23333 4789999999999999999999999999999997
Q ss_pred ccccccccCCCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCCC
Q 012416 315 KEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFP 394 (464)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (464)
T Consensus 308 -------------------------------------------------------------------------------- 307 (423)
T COG4536 308 -------------------------------------------------------------------------------- 307 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEeHHHHHHHHHhccccccchhhHhhhhhcccccEEEEEehhhHHh
Q 012416 395 SNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSFMFSFVFYFFIFLCM 447 (464)
Q Consensus 395 ~~~~~~g~vt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (464)
|.+.|+||+||++|+|+ ||+.||.|...+-..+.++ +||+++|-.-+-=
T Consensus 308 --G~i~GLVTLEDIlEEIV-Gdftde~d~~~~ev~~q~d-gs~iidGs~~iRd 356 (423)
T COG4536 308 --GDIQGLVTLEDILEEIV-GDFTDEHDTLAKEVIPQSD-GSFIIDGSANVRD 356 (423)
T ss_pred --CcEEeeeeHHHHHHHHh-ccccccCcccchhhcccCC-CcEEEeCCCcHHH
Confidence 57999999999999999 8999999998777776666 5999999876543
No 3
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-59 Score=488.62 Aligned_cols=326 Identities=20% Similarity=0.314 Sum_probs=279.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHHHHh----hhh--
Q 012416 25 VCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDK----LVP-- 98 (464)
Q Consensus 25 lllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~~~~----~~~-- 98 (464)
+++||||||+|+|++|+++.++++++++|++ +|+++++++++|+++|+|+|+|||++|++.+.+... +++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4679999999999999999999999999986 577899999999999999999999999876544322 222
Q ss_pred -hHHHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---hCCCc----cccCCHH
Q 012416 99 -PWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGH----AVLLRRA 170 (464)
Q Consensus 99 -~~~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l---~g~~~----~~~~s~e 170 (464)
.++++++.|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++.+ +|.+. ...+|++
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 223556678899999999999999999999999999999999999999999999988764 45432 2468999
Q ss_pred HHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCC
Q 012416 171 ELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP 250 (464)
Q Consensus 171 EL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~ 250 (464)
||+.+++. +. +.++++|++|++|+++|++++|+|+|+||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus 158 El~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 99999984 22 259999999999999999999999999999999999999998 999999999999999999888
Q ss_pred CcEEEEEEcchhccccccc-c---cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCccccccccccCCCC
Q 012416 251 TNIIGLILVKNLLSVDYRD-A---VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKK 326 (464)
Q Consensus 251 d~iVGIVt~kDLl~~~~~~-~---~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~~~~~~~~~~~~~ 326 (464)
|+++|+||.||++....++ . ..+.++ .+|+.+||+++++.++++.|++++.|+|+|+|||
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy--------------- 294 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY--------------- 294 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC---------------
Confidence 9999999999998643221 1 234455 6899999999999999999999999999999997
Q ss_pred CCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCCCCCCceEEEEeHH
Q 012416 327 PRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITME 406 (464)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vt~~ 406 (464)
|..+|+||+|
T Consensus 295 ----------------------------------------------------------------------G~~~GiVTle 304 (413)
T PRK11573 295 ----------------------------------------------------------------------GDIQGLVTVE 304 (413)
T ss_pred ----------------------------------------------------------------------CCeEEEeeHH
Confidence 5789999999
Q ss_pred HHHHHHHhccccccchhh-HhhhhhcccccEEEEEehhhHHhHH
Q 012416 407 DVIEELLQEEILDETDEY-VNIHNRLSFMFSFVFYFFIFLCMWN 449 (464)
Q Consensus 407 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (464)
|++|+|+ |||.||+|.. .....+++. ++|+++|.+-+-=.|
T Consensus 305 DilEeiv-Gei~de~d~~~~~~i~~~~~-~~~~v~G~~~l~d~~ 346 (413)
T PRK11573 305 DILEEIV-GDFTTSMSPTLAEEVTPQND-GSVIIDGTANVREIN 346 (413)
T ss_pred HHHHHHh-CCCCcccCcccccceEEecC-CEEEEEeeeEHHHHH
Confidence 9999999 8999998863 233455565 599999987654433
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=2.3e-55 Score=462.19 Aligned_cols=341 Identities=29% Similarity=0.469 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 012416 14 FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFL 93 (464)
Q Consensus 14 ~w~~lllilillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~~ 93 (464)
.+..++++++|+++|||||++|+|++|++|.|+++++++|++ +|..+++++++++++++++++|+|++++..+.+.
T Consensus 3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~ 78 (429)
T COG1253 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAVG 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 455667888899999999999999999999999999999875 5778899999999999999999999987765443
Q ss_pred Hhhh----hhHH---------HHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhC
Q 012416 94 DKLV----PPWA---------AVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLG 160 (464)
Q Consensus 94 ~~~~----~~~~---------a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l~g 160 (464)
...+ ..|. .+++.|+++++|||++||++|+++|++++++.++++++++++++|++|+++++++.+++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~ 158 (429)
T COG1253 79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR 158 (429)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 1111 14566888999999999999999999999999999999999999999999999987653
Q ss_pred ---CC----ccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHH
Q 012416 161 ---KG----HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLN 233 (464)
Q Consensus 161 ---~~----~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~ 233 (464)
.. .....++++++ +++ ++.+.|.++++|++|++++|+|++++|+++||||+++++++.+.+++ ++.+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~ 232 (429)
T COG1253 159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE 232 (429)
T ss_pred HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence 22 22345677777 665 56788999999999999999999999999999999999999999998 9999
Q ss_pred HHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc--cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 012416 234 AIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 311 (464)
Q Consensus 234 ~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~--~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDey 311 (464)
.+.+++|||+|||+++.|+++|++|.||++.....++ ...... .+|+++||+++++.++|++||+++.|+|+|+|||
T Consensus 233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 9999999999999988899999999999998766552 222223 4699999999999999999999999999999997
Q ss_pred CccccccccccCCCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCC
Q 012416 312 NEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFP 391 (464)
Q Consensus 312 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (464)
T Consensus 312 -------------------------------------------------------------------------------- 311 (429)
T COG1253 312 -------------------------------------------------------------------------------- 311 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEEEeHHHHHHHHHhccccccchh--hHhhhhhcccccEEEEEehhhHHhHHHHHH
Q 012416 392 DFPSNDEAVGVITMEDVIEELLQEEILDETDE--YVNIHNRLSFMFSFVFYFFIFLCMWNLLID 453 (464)
Q Consensus 392 ~~~~~~~~~g~vt~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (464)
|.+.|+||+||++|+|. |||.||+|. ...++.+ ..+. |.+.|.+-+.=.|-.++
T Consensus 312 -----G~~~GlVTleDIiEeIv-Gei~de~d~~~~~~~~~~-~~~~-~~v~G~~~l~e~~~~l~ 367 (429)
T COG1253 312 -----GGVEGLVTLEDIIEEIV-GEIPDEHDEDEEEDIIQR-DDDG-WLVDGRVPLEELEELLG 367 (429)
T ss_pred -----CCeEEEeEHHHHHHHHh-CCCcCcccccccccceEe-cCCc-EEEeccccHHHHHHHhC
Confidence 57899999999999999 899999987 4455554 3443 99999988876665544
No 5
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.97 E-value=1.1e-29 Score=255.02 Aligned_cols=199 Identities=25% Similarity=0.425 Sum_probs=168.9
Q ss_pred HHhhCCCccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHH
Q 012416 156 DLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAI 235 (464)
Q Consensus 156 ~~l~g~~~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m 235 (464)
..++|..+ .|++||+.+++ ++.++|.++++|+++++++|+|++++|+++|+||.++++++.+++++ ++++.+
T Consensus 24 ~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i 95 (292)
T PRK15094 24 SQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95 (292)
T ss_pred HHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence 33455442 58999999998 46678999999999999999999999999999999999999999998 999999
Q ss_pred HHcCCcEeeEEecCCCcEEEEEEcchhcccccc--cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q 012416 236 MTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNE 313 (464)
Q Consensus 236 ~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~ 313 (464)
.+++|+++|||+++.|+++|+|+.+|++..... ...++.++ ++++++|++++++.++++.|++++.+++||+|+|
T Consensus 96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~-- 172 (292)
T PRK15094 96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEF-- 172 (292)
T ss_pred HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC--
Confidence 999999999998766899999999999864432 12347887 5777899999999999999999999999999995
Q ss_pred cccccccccCCCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCC
Q 012416 314 KKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDF 393 (464)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (464)
T Consensus 173 -------------------------------------------------------------------------------- 172 (292)
T PRK15094 173 -------------------------------------------------------------------------------- 172 (292)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEEeHHHHHHHHHhccccccchhhH-hhhhhcccccEEEEEehhhHHhHHH
Q 012416 394 PSNDEAVGVITMEDVIEELLQEEILDETDEYV-NIHNRLSFMFSFVFYFFIFLCMWNL 450 (464)
Q Consensus 394 ~~~~~~~g~vt~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (464)
|.++|+||++|++|+|+ |+|.||+|... ....+++. ++|++.|-+-+--.|-
T Consensus 173 ---G~viGiVTleDIle~iv-Gei~de~d~~~~~~i~~~~~-~~~~v~G~~~l~dl~~ 225 (292)
T PRK15094 173 ---GGVSGLVTIEDILELIV-GEIEDEYDEEDDIDFRQLSR-HTWTVRALASIEDFNE 225 (292)
T ss_pred ---CCEEEEeEHHHHHHHHh-CCCccccccccccccEEeCC-CeEEEEeccCHHHHHH
Confidence 57999999999999999 89999998543 22344555 5999999887654443
No 6
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.6e-29 Score=240.06 Aligned_cols=202 Identities=24% Similarity=0.447 Sum_probs=175.4
Q ss_pred HHHHHHHhhCCCccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHH
Q 012416 151 ISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLD 230 (464)
Q Consensus 151 l~~l~~~l~g~~~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~ee 230 (464)
+.++++.++..+ +-+++||-.++. .+++.+.++.+-+.|++++++..+.+|+|||+||+++++++.+.++. +
T Consensus 19 fe~L~~~~f~gE---pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGE---PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCC---CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 444554555443 347899999997 56778999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEE
Q 012416 231 TLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 308 (464)
Q Consensus 231 al~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VV 308 (464)
.+..+.++.||||||+.++.|++.||++.|||++..... ...+.++ .||+.+||++..+..+|+.|+.++.|||+|+
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi 169 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI 169 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence 999999999999999998889999999999999876543 4678886 8999999999999999999999999999999
Q ss_pred ecCCccccccccccCCCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCC
Q 012416 309 KDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENG 388 (464)
Q Consensus 309 DeyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (464)
|||
T Consensus 170 DEf----------------------------------------------------------------------------- 172 (293)
T COG4535 170 DEF----------------------------------------------------------------------------- 172 (293)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 997
Q ss_pred CCCCCCCCCceEEEEeHHHHHHHHHhccccccchhh--HhhhhhcccccEEEEEehhhHHhHH
Q 012416 389 PFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEY--VNIHNRLSFMFSFVFYFFIFLCMWN 449 (464)
Q Consensus 389 ~~~~~~~~~~~~g~vt~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (464)
|.+-|.||.||++|+|+ |||.||+|+. .+ ...++. +.|.+.+..=+-=+|
T Consensus 173 --------GgVsGLVTIEDiLEqIV-GdIEDE~Deee~~d-I~~ls~-~~~~VrALT~IedFN 224 (293)
T COG4535 173 --------GGVSGLVTIEDILEQIV-GDIEDEYDEEEDAD-IRQLSR-HTWRVRALTEIEDFN 224 (293)
T ss_pred --------CCeeeeEEHHHHHHHHh-cccccccchhhhhh-hHhhcC-CceEEEecccHHHHH
Confidence 57899999999999999 8999999886 44 334555 588888877665555
No 7
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.96 E-value=3.1e-30 Score=274.73 Aligned_cols=421 Identities=42% Similarity=0.575 Sum_probs=329.7
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHH-hHHhHchHHhhcchhHHHHHHHHH
Q 012416 5 SDVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI-HAAKIFPVVKNQHLLLCTLLIGNS 83 (464)
Q Consensus 5 ~~~~~~~~~~w~~lllilillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~-~A~~ll~L~~~~~~~L~tilIGn~ 83 (464)
.+..||.++++...-.+++++++++++||.+.++.+.+-..++.+.+.|...+++ .++++....++.+.+|+|++++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~ 82 (498)
T KOG2118|consen 3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS 82 (498)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence 4567899888877777777999999999999999999999999999999887764 577777888889999999999999
Q ss_pred HHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhCCC
Q 012416 84 LAMEA-LPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKG 162 (464)
Q Consensus 84 i~~i~-l~~~~~~~~~~~~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l~g~~ 162 (464)
+++.+ +..+.......|.++.+++..+++|||++|+.++.+|.-.+..-+.|+.+++.++++|+.|+++++ +..+|..
T Consensus 83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~ 161 (498)
T KOG2118|consen 83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN 161 (498)
T ss_pred hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence 99988 777777777778888899999999999999999999999999999999999999999999999988 7777876
Q ss_pred ccccCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcE
Q 012416 163 HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSR 242 (464)
Q Consensus 163 ~~~~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr 242 (464)
......+.++..++..+++|+.+ |.+..+|..++.+++++.++.++++|+|-.++..++.+..+.++....+.++||||
T Consensus 162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr 240 (498)
T KOG2118|consen 162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR 240 (498)
T ss_pred cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence 66677789999999999988866 99999999999999999999999999999999999999999877788888999999
Q ss_pred eeEEecCCCcEEEEEEcchhcccc----cccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q 012416 243 VPVYSGNPTNIIGLILVKNLLSVD----YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGE 318 (464)
Q Consensus 243 ~PVvd~d~d~iVGIVt~kDLl~~~----~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG~~~~~~ 318 (464)
+||++++..+.+|.+-...++... .....++.+.+.++.+.+|+++++.+.++.|++.+.|++.|...++.. ...
T Consensus 241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~-~~~ 319 (498)
T KOG2118|consen 241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDI-FVL 319 (498)
T ss_pred eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEecCCcce-eeE
Confidence 999987767778876666666554 333567888888999999999999999999999999999998743211 100
Q ss_pred ccccC-----CCCCCCCCCcCcccccccccccccccccccccccccccCCCCCCCCCcccccCCCCcccccCCCCCCCCC
Q 012416 319 LFKDN-----CKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDF 393 (464)
Q Consensus 319 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (464)
.-.+. ...+-.-++ -.+......+..+...+..... +.........-.++++...+.++.+++..++++-
T Consensus 320 ~l~~~~~~~~ev~de~d~~-~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
T KOG2118|consen 320 TLEDLEEVVKEVEDEEDKE-EIKFETGIFTLRGIGDLDAGAV----TDIDQLGERSPIKERSPRSSESLLDSRKSAFEDL 394 (498)
T ss_pred eccchhhhcceeccccccc-cchhcccchhhccccccccccc----chhhhhcccccccccCCCCCcccccccccccccc
Confidence 00110 000000000 1111111111111111111000 0000011444567788888888888888888877
Q ss_pred CCC-CceEEEEeHHHHHHHHHhccccccchhhHhhhhhccc
Q 012416 394 PSN-DEAVGVITMEDVIEELLQEEILDETDEYVNIHNRLSF 433 (464)
Q Consensus 394 ~~~-~~~~g~vt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (464)
... .-..|+.|++++++...+++++++.+.+...+++...
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 435 (498)
T KOG2118|consen 395 AELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRN 435 (498)
T ss_pred ccccccCccceehhhhhccccchhhhccccceechhhhhhh
Confidence 655 4567899999999999989999999988777765543
No 8
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.95 E-value=6.9e-27 Score=217.58 Aligned_cols=168 Identities=29% Similarity=0.486 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHhHHhHchHHhhcchhHHHHHHHHHHHHHHHHHHHHhh-
Q 012416 18 VLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKL- 96 (464)
Q Consensus 18 lllilillllsafFsgsE~Al~Sv~r~rL~~l~~~g~~~~~~~A~~ll~L~~~~~~~L~tilIGn~i~~i~l~~~~~~~- 96 (464)
++++++++++|||||++|+|++++|+.+++.++++|++ +++++.++++||+++++|+++||++++++.+.+....
T Consensus 3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~ 78 (183)
T PF01595_consen 3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA 78 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788999999999999999999999999999885 5778999999999999999999999998766443322
Q ss_pred ---h----hhHHHHHHHHHHHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh---CCC--cc
Q 012416 97 ---V----PPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML---GKG--HA 164 (464)
Q Consensus 97 ---~----~~~~a~lv~t~lilifGEiiPK~lA~~~pe~ia~~~a~~l~~~~~ll~Plv~~l~~l~~~l~---g~~--~~ 164 (464)
. +.++++++.++++++|||++||.+|.+||++++.+.+|++++++++++|+++++.++.+.+. |.+ ++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~ 158 (183)
T PF01595_consen 79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED 158 (183)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 2 22345566778899999999999999999999999999999999999999999999988754 333 24
Q ss_pred ccCCHHHHHHHHhhcccccccCCCCChhH
Q 012416 165 VLLRRAELKTFVNFHGNEAGKGGDLTHDE 193 (464)
Q Consensus 165 ~~~s~eEL~~lve~~~~e~~~~G~L~~~E 193 (464)
+.+|+|||+.+++ +++++|.++++|
T Consensus 159 ~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 159 PAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 6789999999998 567889999886
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-16 Score=156.92 Aligned_cols=137 Identities=14% Similarity=0.253 Sum_probs=113.9
Q ss_pred cCCHHHHHHHHhhcccccccCCCCChhHHHHHHHhh-------cccccccccccccCcceEEEcCCCChHHHHHHHHHHc
Q 012416 166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGAL-------ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM 238 (464)
Q Consensus 166 ~~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl-------~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~ 238 (464)
.++.+|+...+.. -.|--+|++++-+-+-+-. .+.+.++.|||++ ++++++.+++++ ++.+.+.+|
T Consensus 202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 5788999888863 2334567777655443332 2568899999996 999999999998 999999999
Q ss_pred CCcEeeEEecCCCcEEEEEEcchhcccccc---------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416 239 GHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (464)
Q Consensus 239 ~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVD 309 (464)
++..+||.|++ .+++|+|+.+|+++.... .+..++.+|..++.++.++++..+++..|.+.+.|.+||+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999976 799999999999873211 14578999988999999999999999999999999999999
Q ss_pred c
Q 012416 310 D 310 (464)
Q Consensus 310 e 310 (464)
+
T Consensus 354 ~ 354 (382)
T COG3448 354 A 354 (382)
T ss_pred C
Confidence 8
No 10
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.70 E-value=1.7e-16 Score=168.49 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=114.2
Q ss_pred cCCHHHHHHHHhhcccccccC------CCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHH--
Q 012416 166 LLRRAELKTFVNFHGNEAGKG------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMT-- 237 (464)
Q Consensus 166 ~~s~eEL~~lve~~~~e~~~~------G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~-- 237 (464)
.++.+|+..+++. ..++ +.++++|++.+++++++++.+|+++|++ ++++++++.|+. ++++.+++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 4577888888873 3333 4799999999999999999999999985 889999999998 99999975
Q ss_pred ---cCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 238 ---MGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 238 ---~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++...+||+|++ ++++|+|+.+|++.... +.+++++|.++++++++++++.++++.|++++...+||+|+
T Consensus 162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~ 234 (449)
T TIGR00400 162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN 234 (449)
T ss_pred CCccceeEEEEECCC-CeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC
Confidence 233456666654 89999999999986543 34799998878888999999999999999999999999998
No 11
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.63 E-value=3.4e-15 Score=158.69 Aligned_cols=133 Identities=14% Similarity=0.246 Sum_probs=113.8
Q ss_pred ccCCHHHHHHHHhhcccccccCCCCCh-----hHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC
Q 012416 165 VLLRRAELKTFVNFHGNEAGKGGDLTH-----DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 239 (464)
Q Consensus 165 ~~~s~eEL~~lve~~~~e~~~~G~L~~-----~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~ 239 (464)
..+|++|+..++.. ....|.|.+ +|++++++++++.+ .|.+ +++++++++|+. ++++.|.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 56799999999874 334688884 89999999997766 4553 678899999998 9999999999
Q ss_pred CcEeeEEecCC--CcEEEEEEcchhcccccccccccccccc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 240 HSRVPVYSGNP--TNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 240 ~Sr~PVvd~d~--d~iVGIVt~kDLl~~~~~~~~~V~dIM~-r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++||++++. ++++|+|+.+|++.... ...++.++|. .+++++++++++.++++.|++++.+.+||+|+
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe 183 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK 183 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 99999998753 68999999999975432 3457899987 48999999999999999999999999999998
No 12
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.62 E-value=1.1e-15 Score=147.70 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=100.0
Q ss_pred HHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--ccccc
Q 012416 197 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLR 274 (464)
Q Consensus 197 I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~ 274 (464)
+..+.+.++.+|+++|++ +++++.+++|+. |+.+.+.+++++..||+|+ |+++|+++..|+..+..++ ...|.
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 345667789999999996 889999999998 9999999999999999986 5999999999999887664 56899
Q ss_pred cccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 275 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 275 dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++|.+.++++.+|+.+.||++.|..+++..++|+|.
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds 273 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS 273 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc
Confidence 999999999999999999999999999999999996
No 13
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.62 E-value=2.3e-15 Score=150.85 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=101.7
Q ss_pred HHHHHHhhcc-----cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416 194 TTIIAGALEL-----TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR 268 (464)
Q Consensus 194 ~~~I~~vl~l-----~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~ 268 (464)
..||..++.= +=++|.|||+|..+..++..+++++ +..++..++||+||||+|.. .+++|+|+.||+....+.
T Consensus 171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~~ 248 (432)
T COG4109 171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKPS 248 (432)
T ss_pred HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCCC
Confidence 4566665542 3478999999999999999999998 99999999999999999976 899999999999977554
Q ss_pred cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 269 DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 269 ~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.++..+|.+.|.+|.+.+++..+.+.|.-.+..++||+|+
T Consensus 249 --t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~ 288 (432)
T COG4109 249 --TTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS 288 (432)
T ss_pred --ccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC
Confidence 5899999999999999999999999999999999999998
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.50 E-value=3.2e-13 Score=144.97 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=112.2
Q ss_pred ccCCHHHHHHHHhhcccccccCCCCC-----hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC
Q 012416 165 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 239 (464)
Q Consensus 165 ~~~s~eEL~~lve~~~~e~~~~G~L~-----~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~ 239 (464)
..+|++|+...+.. +...|.|. ++++++++++.++ +++|.+ +++++++++++. ++++.|.+++
T Consensus 50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhh-----hhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 46799999998863 34457777 4788899988864 567764 778899999998 9999999999
Q ss_pred CcEeeEEecCCCcEEEEEEcchhcccccccccccccccc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 240 ~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~-r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++||++++ ++++|+|+.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|+
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe 187 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD 187 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 9999999865 8999999999997543 22457899987 78899999999999999999999999999998
No 15
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.48 E-value=1.8e-13 Score=139.29 Aligned_cols=105 Identities=19% Similarity=0.124 Sum_probs=91.3
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----cccccccccc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIR 279 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r 279 (464)
...+|+|+|++..+++++++++|+. ++++.|.+++++.+||++++ |+++|+|+.+|+.+....+ ..++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 5678999999645788999999998 99999999888888888765 8999999999987654321 3579999989
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++.++++++++.++++.|.+++.+.+||+|+
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~ 308 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVADG 308 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC
Confidence 9999999999999999999999999999986
No 16
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=3.9e-13 Score=114.31 Aligned_cols=92 Identities=20% Similarity=0.374 Sum_probs=80.8
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--ccccccccccCCcEecCCCCHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 294 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r~~~~V~e~~~l~eaL 294 (464)
++++++++.++. ++.+.|.+++++++||++++ ++++|+++.+|+.+...+. ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 457889999998 99999999999999999865 8999999999998643222 2468899888899999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 012416 295 NEFQKGHSHIAVVYKD 310 (464)
Q Consensus 295 ~~m~~~~~~~a~VVDe 310 (464)
+.|.+++.+.+||+|+
T Consensus 80 ~~m~~~~~~~lpVvd~ 95 (111)
T cd04603 80 RIFRETEPPVVAVVDK 95 (111)
T ss_pred HHHHHcCCCeEEEEcC
Confidence 9999999999999997
No 17
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=6e-13 Score=114.37 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=76.1
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--c---ccccc------ccccCCcEec
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A---VPLRK------MIIRRIPRVS 285 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~---~~V~d------IM~r~~~~V~ 285 (464)
++.++++++++. ++.+.|.+++++++||++++ ++++|+++.+|++.....+ . .++.+ +|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999998 99999999999999999864 8999999999998643221 1 11222 2335578899
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 286 EDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 286 e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd~ 104 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVDE 104 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEECC
Confidence 9999999999999999999999997
No 18
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=8.8e-13 Score=110.88 Aligned_cols=92 Identities=12% Similarity=0.260 Sum_probs=81.3
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~ 296 (464)
++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|++........++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567889999998 99999999999999999875 8999999999998654333346888887889999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 012416 297 FQKGHSHIAVVYKD 310 (464)
Q Consensus 297 m~~~~~~~a~VVDe 310 (464)
|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~Vv~~ 94 (110)
T cd04605 81 MERHNISALPVVDA 94 (110)
T ss_pred HHHhCCCEEeEECC
Confidence 99999999999987
No 19
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=8.7e-13 Score=112.53 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=81.0
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----cccccccccccCCcEecCCCCHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 291 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~dIM~r~~~~V~e~~~l~ 291 (464)
++.++++++++. ++.+.|.++++..+||++++ ++++|+++.+|+.+.... ...++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 356789999998 99999999999999999875 899999999998864321 13578899888999999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 012416 292 DILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 292 eaL~~m~~~~~~~a~VVDe 310 (464)
++++.|.+++.+.+||+|+
T Consensus 80 ~a~~~m~~~~~~~lpVvd~ 98 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVDE 98 (114)
T ss_pred HHHHHHHHcCCCeEEEECC
Confidence 9999999999999999997
No 20
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.44 E-value=3.5e-13 Score=136.60 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=90.4
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---cccccccccccCC
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRI 281 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---~~~~V~dIM~r~~ 281 (464)
..+|+++|++..++.++++++++. ++.+.|.+++.+.+||+|++ ++++|+|+.+|+.+.... ...++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 467999998643488999999998 99999999999999999875 899999999998754322 2356889998889
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++++++++.++++.|.+++...+||+|+
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 302 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDE 302 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 99999999999999999999999999997
No 21
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.1e-12 Score=110.26 Aligned_cols=92 Identities=12% Similarity=0.202 Sum_probs=80.3
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----ccccccccccCCcEecCCCCHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLY 291 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~~~V~dIM~r~~~~V~e~~~l~ 291 (464)
++++++++.++. ++.+.+.+++++++||++++ ++++|+++.+|++...... ..++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 467789999998 99999999999999999875 7999999999998653321 3468888878889999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 012416 292 DILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 292 eaL~~m~~~~~~~a~VVDe 310 (464)
++++.|.+.+.+.+||+|+
T Consensus 80 ~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 80 EAMALMTERRFRHLPVVDG 98 (113)
T ss_pred HHHHHHHHcCCCEeEEEeC
Confidence 9999999999999999987
No 22
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=9.2e-13 Score=111.15 Aligned_cols=92 Identities=14% Similarity=0.269 Sum_probs=80.6
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---ccccccccccCCcEecCCCCHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI 293 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~~~V~dIM~r~~~~V~e~~~l~ea 293 (464)
++.+++.++++. ++++.+.+++++++||++++ ++++|+++.+|++...... ..++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 466789999998 99999999999999999875 8999999999998654322 246888888888999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 012416 294 LNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 294 L~~m~~~~~~~a~VVDe 310 (464)
++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04626 80 LDIMREKQIGRLPVVDD 96 (111)
T ss_pred HHHHHHcCCCeeeEeEC
Confidence 99999999999999987
No 23
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=1.3e-12 Score=109.90 Aligned_cols=80 Identities=15% Similarity=0.314 Sum_probs=72.1
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~ 296 (464)
+++++++++++. ++.+.|.+++++.+||++++.++++|+++.+|+.+... +.++++++++.++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578899999998 99999999999999999864478999999999985321 6789999999999999
Q ss_pred HHhCCCcEEEEEec
Q 012416 297 FQKGHSHIAVVYKD 310 (464)
Q Consensus 297 m~~~~~~~a~VVDe 310 (464)
|.+++.+.+||+|+
T Consensus 68 m~~~~~~~lpVvd~ 81 (98)
T cd04618 68 LLKNKIHRLPVIDP 81 (98)
T ss_pred HHHCCCCEeeEEEC
Confidence 99999999999997
No 24
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.3e-12 Score=110.04 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=80.7
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~ 296 (464)
++.++++++++. ++.+.+.+++++.+||++++ ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKDP--DTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhcccc--cccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 577899999998 99999999999999999865 89999999999986432 347889987888999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 012416 297 FQKGHSHIAVVYKD 310 (464)
Q Consensus 297 m~~~~~~~a~VVDe 310 (464)
|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~Vv~~ 92 (108)
T cd04596 79 MIWEGIEMLPVVDD 92 (108)
T ss_pred HHHcCCCeeeEEcC
Confidence 99999999999997
No 25
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.7e-12 Score=110.43 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=80.3
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----cccccccccccCCcEecCCCCHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 291 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~dIM~r~~~~V~e~~~l~ 291 (464)
++.++++++++. ++++.|.+++++.+||++++.++++|+++.+|+++.... ...++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999998 999999999999999998633799999999999863211 12468888888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 012416 292 DILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 292 eaL~~m~~~~~~~a~VVDe 310 (464)
++++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~~Vvd~ 99 (114)
T cd04630 81 YCARLMERTNIRRAPVVEN 99 (114)
T ss_pred HHHHHHHHcCCCEeeEeeC
Confidence 9999999999999999987
No 26
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.42 E-value=9.4e-13 Score=119.34 Aligned_cols=119 Identities=22% Similarity=0.324 Sum_probs=95.3
Q ss_pred cCCCCChhH---HHHHHHhhcc--cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEc
Q 012416 185 KGGDLTHDE---TTIIAGALEL--TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILV 259 (464)
Q Consensus 185 ~~G~L~~~E---~~~I~~vl~l--~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~ 259 (464)
+.|.+++.- +++++...+- ..++++.+|+. +++.+.+++++. ++++.|.++|+|.+||+++ |+++|-|+.
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 347776654 3333333333 35789999984 899999999998 9999999999999999986 799999999
Q ss_pred chhccccccc-----ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 260 KNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 260 kDLl~~~~~~-----~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++.+...++ +..++++|-.+.++|++++++..+-..+..+ +.+.|+++
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~ 167 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVEN 167 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEeC
Confidence 9998875432 5678999999999999999999998888877 56667643
No 27
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.42 E-value=1.5e-12 Score=110.66 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=79.9
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCCCCHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~~~l~e 292 (464)
++.++++++++. ++.+.|.+.+++++||++++ ++++|+++.+|++...... ..++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence 345779999998 99999999999999999875 8999999999998654321 23478888888999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 012416 293 ILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 293 aL~~m~~~~~~~a~VVDe 310 (464)
+++.|.+++.+.+||+|+
T Consensus 80 ~l~~~~~~~~~~~~Vvd~ 97 (115)
T cd04593 80 ALDRMASRGLRQLPVVDR 97 (115)
T ss_pred HHHHHHHcCCceeeEEeC
Confidence 999999999999999998
No 28
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.4e-12 Score=111.94 Aligned_cols=92 Identities=16% Similarity=0.343 Sum_probs=80.6
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--------------ccccccccccCCc
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP 282 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--------------~~~V~dIM~r~~~ 282 (464)
++.+++++.++. ++.+.|.+++++++||++++ ++++|+|+.+|++...... ..++.++|.+++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567899999998 99999999999999999875 8999999999997543221 2368888888899
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++++.++++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~ 108 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDE 108 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence 9999999999999999999999999997
No 29
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.41 E-value=1.8e-12 Score=109.18 Aligned_cols=93 Identities=41% Similarity=0.637 Sum_probs=79.5
Q ss_pred cceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc--cccccccccCCcEecCCCCHHHH
Q 012416 216 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDI 293 (464)
Q Consensus 216 ~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~--~~V~dIM~r~~~~V~e~~~l~ea 293 (464)
++++++++++++. ++.+.|.+.+++.+||++++.++++|+++.+|++.....+. .++.++ ++++.++++++++.++
T Consensus 1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~ 78 (111)
T cd04590 1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL 78 (111)
T ss_pred CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence 3678899999998 99999999999999999764378999999999987654321 346665 5788899999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 012416 294 LNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 294 L~~m~~~~~~~a~VVDe 310 (464)
++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~Vv~~ 95 (111)
T cd04590 79 LEEMRKERSHMAIVVDE 95 (111)
T ss_pred HHHHHhcCCcEEEEEEC
Confidence 99999999999999998
No 30
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=1.9e-12 Score=109.18 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=80.1
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---ccccccccccCCcEecCCCCHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI 293 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~~~V~dIM~r~~~~V~e~~~l~ea 293 (464)
++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++..... ..++.++|.++++.+++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 356789999998 99999999999999999876 8999999999997653321 346888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 012416 294 LNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 294 L~~m~~~~~~~a~VVDe 310 (464)
++.|.+++...+||+|+
T Consensus 80 ~~~~~~~~~~~~~Vv~~ 96 (112)
T cd04624 80 AKLMRKNNIRHHLVVDK 96 (112)
T ss_pred HHHHHHcCccEEEEEcC
Confidence 99999999999999997
No 31
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.3e-12 Score=110.85 Aligned_cols=93 Identities=15% Similarity=0.272 Sum_probs=80.3
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---------------ccccccccccCC
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------AVPLRKMIIRRI 281 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---------------~~~V~dIM~r~~ 281 (464)
++.+++++.++. ++++.|.+++++++||++++.++++|+|+.+|++....+. ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 467789999998 9999999999999999986447999999999998643321 236788887889
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++++++++.++++.|.+.+.+.+||+|+
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 109 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDD 109 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcC
Confidence 99999999999999999999999999987
No 32
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.2e-12 Score=108.69 Aligned_cols=92 Identities=24% Similarity=0.386 Sum_probs=80.4
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--cccccccccccCCcEecCCCCHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--~~~~V~dIM~r~~~~V~e~~~l~eaL 294 (464)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+|+.+|+.+.... ...++.++|.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456789999998 99999998999999999875 899999999999865322 23478888888999999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 012416 295 NEFQKGHSHIAVVYKD 310 (464)
Q Consensus 295 ~~m~~~~~~~a~VVDe 310 (464)
+.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~Vv~~ 95 (111)
T cd04639 80 RLMQQGGAPAVPVVDG 95 (111)
T ss_pred HHHHhcCCceeeEEcC
Confidence 9999999999999987
No 33
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2.8e-12 Score=135.53 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=111.1
Q ss_pred CCHHHHHHHHhhcccccccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC-----Cc
Q 012416 167 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HS 241 (464)
Q Consensus 167 ~s~eEL~~lve~~~~e~~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~-----~S 241 (464)
+..+..+.++. .++++|++.++..+.+++.+++.+|+. ++++++++.|+. ++++++++.+ ..
T Consensus 103 lp~~~~~~lL~----------~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~ 169 (451)
T COG2239 103 LPDEVRDELLS----------LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIY 169 (451)
T ss_pred CCHHHHHHHHH----------hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccc
Confidence 34455555664 478999999999999999999999995 899999999999 9999999554 34
Q ss_pred EeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 242 RVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 242 r~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.+.|+|.+ ++++|+++.++++...++ .++.++|.+.+.+|+++++.+++.+.|++++.-.+||||+
T Consensus 170 ~lyVvD~~-~~L~Gvvsl~~Ll~a~~~--~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~ 235 (451)
T COG2239 170 YLYVVDEK-GKLLGVVSLRDLLTAEPD--ELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE 235 (451)
T ss_pred eEEEECCc-cceEEEeeHHHHhcCCcH--hHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence 56778876 789999999999976554 4899999888999999999999999999999999999998
No 34
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3e-12 Score=111.14 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=77.4
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccc-----------------cccccccc
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV-----------------PLRKMIIR 279 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~-----------------~V~dIM~r 279 (464)
+++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++........ ...+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999998 99999999999999999876 899999999999865432210 11235567
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++.++++++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~ 110 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDE 110 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEECC
Confidence 8889999999999999999999999999997
No 35
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.5e-12 Score=109.24 Aligned_cols=92 Identities=20% Similarity=0.325 Sum_probs=80.2
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-------------cccccccccccCCcE
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-------------DAVPLRKMIIRRIPR 283 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-------------~~~~V~dIM~r~~~~ 283 (464)
++.++++++++. ++.+.|.+.+++++||++++ ++++|+++.+|+++.... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999998 99999999999999999875 899999999998864321 234678888788999
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 284 V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++++++.++++.|++++.+.+||+|+
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVDD 106 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 999999999999999999999999987
No 36
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.3e-12 Score=110.21 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=76.6
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--c-----------cccccccccCCcE
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A-----------VPLRKMIIRRIPR 283 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~-----------~~V~dIM~r~~~~ 283 (464)
++.++++++++. ++++.|.+++++++||++++.++++|+|+.+|+++..... . ....++|.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467789999998 9999999999999999986437899999999987643211 0 1112456778889
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 284 V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++++++.++++.|.+++.+.+||+|+
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~ 107 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDN 107 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECC
Confidence 999999999999999999999999997
No 37
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=4.5e-12 Score=107.45 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=78.6
Q ss_pred eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---cccccccccccCCcEecCCCCHHHHH
Q 012416 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (464)
Q Consensus 218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---~~~~V~dIM~r~~~~V~e~~~l~eaL 294 (464)
.++++.++++. ++++.|.+.++..+||++++ ++++|+++.+|++..... ...++.++|..++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 46789999998 99999999999999999865 899999999998754322 13468888877788899999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 012416 295 NEFQKGHSHIAVVYKD 310 (464)
Q Consensus 295 ~~m~~~~~~~a~VVDe 310 (464)
+.|.+++.+.+||+|+
T Consensus 82 ~~~~~~~~~~~~Vv~~ 97 (113)
T cd04607 82 ALMRERSIRHLPILDE 97 (113)
T ss_pred HHHHHCCCCEEEEECC
Confidence 9999999999999997
No 38
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.6e-12 Score=107.95 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=77.0
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---------ccccccccccCCcEecCC
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKMIIRRIPRVSED 287 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---------~~~V~dIM~r~~~~V~e~ 287 (464)
++++++.++++. ++++.|.+++++++||++++ ++++|+++.+|+++..... ..++.++|.+++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 567899999998 99999999999999999865 7999999999997654321 246888887789999999
Q ss_pred CCHHHHHHHHHhCCCcEEEEEec
Q 012416 288 MPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 288 ~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++.++++.|.+.+ .+||+|+
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~~ 100 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVDD 100 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEeC
Confidence 99999999998764 5899987
No 39
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.38 E-value=3.1e-12 Score=136.78 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=90.9
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP 282 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~ 282 (464)
+..++++++|++ +++++++++|+. ++++.|.+++++.+||+|++ ++++|+|+.+|+..... ..++.++|.+++.
T Consensus 86 l~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~--~~~V~diMt~~~i 159 (479)
T PRK07807 86 VAWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDR--FTQVRDVMSTDLV 159 (479)
T ss_pred Hhhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCcc--CCCHHHhccCCce
Confidence 346678899975 788999999998 99999999999999999865 79999999999975432 3579999999999
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++++.++++.|.+++.+.+||+|+
T Consensus 160 tV~~d~sL~eAl~lM~~~~i~~LPVVD~ 187 (479)
T PRK07807 160 TLPAGTDPREAFDLLEAARVKLAPVVDA 187 (479)
T ss_pred EECCCCcHHHHHHHHHhcCCCEEEEEcC
Confidence 9999999999999999999999999997
No 40
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.37 E-value=5.5e-12 Score=105.46 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=80.1
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~ 296 (464)
++..++++.++. ++.+.|.+++++.+||++++ ++++|+++.+|++..... ..++.++|.+.+.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-AKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-CCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 566789999998 99999999999999999875 899999999999865322 246888888888999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 012416 297 FQKGHSHIAVVYKD 310 (464)
Q Consensus 297 m~~~~~~~a~VVDe 310 (464)
|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~vv~~ 93 (109)
T cd04583 80 VLKRGPKYVPVVDE 93 (109)
T ss_pred HHHcCCceeeEECC
Confidence 99999999999997
No 41
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=3.9e-12 Score=112.82 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=80.2
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---------------------------
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------------------- 269 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--------------------------- 269 (464)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|++......
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 456789999998 99999999999999999875 8999999999998654211
Q ss_pred ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
..++.++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 120 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN 120 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 23688898888889999999999999999999999999987
No 42
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=6.1e-12 Score=104.70 Aligned_cols=89 Identities=10% Similarity=0.195 Sum_probs=79.0
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~ 296 (464)
++.++++++++. ++++.|.+++++.+||++ + ++++|+++.+|+..... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999998 999999999999999997 4 79999999999987543 246888888889999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 012416 297 FQKGHSHIAVVYKD 310 (464)
Q Consensus 297 m~~~~~~~a~VVDe 310 (464)
|.+++...+||+|+
T Consensus 77 ~~~~~~~~~~Vv~~ 90 (105)
T cd04599 77 MEEKKIERLPVLRE 90 (105)
T ss_pred HHHcCCCEeeEEEC
Confidence 99999999999987
No 43
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.37 E-value=6.9e-12 Score=104.71 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=78.1
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~ 296 (464)
++.+++++.++. ++.+.|.+++++.+||++++ |+++|+++.+|++.... .++.++|.+++..+++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 566789999998 99999999999999999865 89999999999986532 24778877777889999999999999
Q ss_pred HHhCCCcEEEEEec
Q 012416 297 FQKGHSHIAVVYKD 310 (464)
Q Consensus 297 m~~~~~~~a~VVDe 310 (464)
|.+++.+.+||+|+
T Consensus 77 ~~~~~~~~~~Vv~~ 90 (106)
T cd04582 77 MFAHDMSWLPCVDE 90 (106)
T ss_pred HHHCCCCeeeEECC
Confidence 99999999999998
No 44
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=2.7e-12 Score=108.94 Aligned_cols=92 Identities=13% Similarity=0.195 Sum_probs=77.1
Q ss_pred ceEEEcCCCChHHHHHHHHHHcC-CcEeeEEecCCCcEEEEEEcchhccccccc--cccccccccc--CCcEecCCCCHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIR--RIPRVSEDMPLY 291 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~-~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r--~~~~V~e~~~l~ 291 (464)
++.++++++++. ++.+.|.+++ ++++||++++ ++++|+|+.+|++...... ..++.++|.. +++.+++++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 466789999998 9999887665 8999999865 8999999999998764322 3467888643 356899999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 012416 292 DILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 292 eaL~~m~~~~~~~a~VVDe 310 (464)
++++.|++++.+.+||+|+
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~ 98 (114)
T cd04801 80 EVLKLLEEQGLDELAVVED 98 (114)
T ss_pred HHHHHHHHCCCCeeEEEcC
Confidence 9999999999999999987
No 45
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.36 E-value=2.8e-12 Score=140.25 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=90.9
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII 278 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~ 278 (464)
++..+|+|+|++ +..+++++++++ ++.+.+.+++++.+||+|++ ++++|+|+.+|+.+...+ ...++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 467789999986 567789999998 99999999999999999875 899999999999874211 1356889988
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 279 r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++++++++.++++.|.+++.+.+||+|+
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~ 551 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVES 551 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC
Confidence 88999999999999999999999999999997
No 46
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=5.6e-12 Score=107.95 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=79.5
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-------------ccccccccccccCCcE
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 283 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-------------~~~~~V~dIM~r~~~~ 283 (464)
++.++++++++. ++.+.|.+.+++.+||++++ ++++|+++.+|++.... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567889999998 99999999999999999865 89999999999975310 1134677888788899
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 284 V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++++++.++++.|.+++.+.+||+|+
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 106 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVNE 106 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence 999999999999999999999999997
No 47
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=4.8e-12 Score=108.59 Aligned_cols=92 Identities=12% Similarity=0.244 Sum_probs=79.0
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----ccccccccccc--CCcEecCCCCH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR--RIPRVSEDMPL 290 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~r--~~~~V~e~~~l 290 (464)
++.++++++++. ++.+.|.+++.+.+||++++ ++++|+|+.+|+.+.... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 457889999998 99999999999999999865 789999999998875431 13457788764 67899999999
Q ss_pred HHHHHHHHhCCCcEEEEEec
Q 012416 291 YDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 291 ~eaL~~m~~~~~~~a~VVDe 310 (464)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~ 99 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEK 99 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeC
Confidence 99999999999999999997
No 48
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.36 E-value=7.4e-12 Score=105.03 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=79.9
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---cccccccccccCCcEecCCCCHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDI 293 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---~~~~V~dIM~r~~~~V~e~~~l~ea 293 (464)
++.++++++++. ++.+.|.+++++.+||+++ ++++|+++.+|+.+.... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 466789999998 9999999999999999976 799999999999865432 2357888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 012416 294 LNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 294 L~~m~~~~~~~a~VVDe 310 (464)
++.|.+.+.+.+||+|+
T Consensus 79 l~~~~~~~~~~~~Vv~~ 95 (111)
T cd04611 79 RQLMREHGIRHLVVVDD 95 (111)
T ss_pred HHHHHHcCCeEEEEECC
Confidence 99999999999999987
No 49
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.36 E-value=7.7e-12 Score=104.77 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=78.1
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecC-CCCHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE-DMPLYDILN 295 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e-~~~l~eaL~ 295 (464)
++.+++.+.++. ++.+.+.+++++++||++++ |+++|+++.+|++.... ...++.++|..++.++.+ ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 567789999998 99999999999999999875 89999999999875432 245788887666666666 999999999
Q ss_pred HHHhCCCcEEEEEec
Q 012416 296 EFQKGHSHIAVVYKD 310 (464)
Q Consensus 296 ~m~~~~~~~a~VVDe 310 (464)
.|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~Vv~~ 94 (110)
T cd04601 80 LLHEHKIEKLPVVDD 94 (110)
T ss_pred HHHHhCCCeeeEEcC
Confidence 999999999999997
No 50
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=4.1e-12 Score=110.40 Aligned_cols=92 Identities=17% Similarity=0.325 Sum_probs=74.9
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc----------cccccccccccccCCcE--e
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----------YRDAVPLRKMIIRRIPR--V 284 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~----------~~~~~~V~dIM~r~~~~--V 284 (464)
++.+++.++++. ++++.|.++++..+||++++ ++++|+++.+|+.... .....++.++|.+++.. +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356789999998 99999998999999999865 8999999999988521 11234688887655433 2
Q ss_pred ----cCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 285 ----SEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 285 ----~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~ 109 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVDR 109 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEEC
Confidence 37899999999999999999999997
No 51
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.35 E-value=8.4e-12 Score=104.71 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=79.4
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc---cccccccccCCcEecCCCCHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VPLRKMIIRRIPRVSEDMPLYDI 293 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~---~~V~dIM~r~~~~V~e~~~l~ea 293 (464)
++..+++++++. ++++.|.+.+++++||+++ ++++|+++.+|+........ .++.++|.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 456789999998 9999999999999999986 89999999999987543321 15677888889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 012416 294 LNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 294 L~~m~~~~~~~a~VVDe 310 (464)
++.|++++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~V~~~ 95 (111)
T cd04612 79 LKRMAERDIGRLPVVDD 95 (111)
T ss_pred HHHHHhCCCCeeeEEcC
Confidence 99999999999999987
No 52
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.2e-12 Score=109.99 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=79.4
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----c--------------------cc
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------------------VP 272 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~--------------------~~ 272 (464)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|++...... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999998 99999999999999999875 8999999999997643221 1 16
Q ss_pred cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+.++|.++++++++++++.++++.|.+.+.+.+||+|+
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 117 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD 117 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence 78888888999999999999999999999999999987
No 53
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.35 E-value=9.3e-12 Score=104.64 Aligned_cols=91 Identities=19% Similarity=0.324 Sum_probs=79.7
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--ccccccccccCCcEecCCCCHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 294 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--~~~V~dIM~r~~~~V~e~~~l~eaL 294 (464)
++++++.++++. ++.+.|.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|..++.+++++.++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 467789999998 9999999999999999986 7999999999998754332 2468888778889999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 012416 295 NEFQKGHSHIAVVYKD 310 (464)
Q Consensus 295 ~~m~~~~~~~a~VVDe 310 (464)
+.|.+.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~V~~~ 94 (110)
T cd04588 79 RLMNKHNVGRLIVTDD 94 (110)
T ss_pred HHHHhcCCCEEEEECC
Confidence 9999999999999987
No 54
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.2e-11 Score=103.33 Aligned_cols=89 Identities=17% Similarity=0.322 Sum_probs=78.7
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~ 296 (464)
++++++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKDP--DETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccCc--cccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567899999998 9999999889999999975 79999999999986432 346888887888899999999999999
Q ss_pred HHhCCCcEEEEEec
Q 012416 297 FQKGHSHIAVVYKD 310 (464)
Q Consensus 297 m~~~~~~~a~VVDe 310 (464)
|.+++.+.+||+|+
T Consensus 78 ~~~~~~~~~~Vv~~ 91 (107)
T cd04610 78 MFRTGISKLPVVDE 91 (107)
T ss_pred HHHhCCCeEeEECC
Confidence 99999999999998
No 55
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=9.1e-12 Score=104.87 Aligned_cols=91 Identities=18% Similarity=0.340 Sum_probs=79.8
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--cccccccccccCCcEecCCCCHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--~~~~V~dIM~r~~~~V~e~~~l~eaL 294 (464)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+++.+|+...... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 567889999998 9999999999999999986 799999999998764422 23578889888899999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 012416 295 NEFQKGHSHIAVVYKD 310 (464)
Q Consensus 295 ~~m~~~~~~~a~VVDe 310 (464)
+.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~V~~~ 95 (110)
T cd04595 80 ELMVEHDIGRVPVVED 95 (110)
T ss_pred HHHHHcCCCeeEEEeC
Confidence 9999999999999985
No 56
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.35 E-value=7.5e-12 Score=105.30 Aligned_cols=92 Identities=16% Similarity=0.292 Sum_probs=80.7
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCCCCHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~~~l~e 292 (464)
++.++++++++. ++++.|.+.+++++||++++ ++++|+++.+|+.....+. ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 467789999998 99999999999999999875 8899999999998653321 25788898888999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 012416 293 ILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 293 aL~~m~~~~~~~a~VVDe 310 (464)
+++.|++.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~Vv~~ 97 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDD 97 (114)
T ss_pred HHHHHhhCCccEeeEEeC
Confidence 999999999999999986
No 57
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=5.1e-12 Score=106.74 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=79.5
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc------cccccccccccCCcEecCCCCH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------DAVPLRKMIIRRIPRVSEDMPL 290 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~------~~~~V~dIM~r~~~~V~e~~~l 290 (464)
++.++++++++. ++.+.|.+++++++||++++ ++++|+++.+|+++.... ...++.++|.+++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456789999998 99999999999999999865 799999999999864321 2356888887888899999999
Q ss_pred HHHHHHHHhCCCcEEEEEec
Q 012416 291 YDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 291 ~eaL~~m~~~~~~~a~VVDe 310 (464)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~~ 99 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVDD 99 (114)
T ss_pred HHHHHHHHHhCCCccCEEEC
Confidence 99999999999999999987
No 58
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=9.8e-12 Score=105.00 Aligned_cols=91 Identities=13% Similarity=0.230 Sum_probs=78.9
Q ss_pred eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccccCCcEecCCCCHHHH
Q 012416 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDI 293 (464)
Q Consensus 218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~r~~~~V~e~~~l~ea 293 (464)
...+++++++. ++++.|.+++++++||++++ ++++|+++.+|+++...+ ...++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 35679999998 99999999999999999875 899999999999864221 1357888888889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 012416 294 LNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 294 L~~m~~~~~~~a~VVDe 310 (464)
++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~Vvd~ 97 (113)
T cd04615 81 RWLMSNNNISRLPVLDD 97 (113)
T ss_pred HHHHHHcCCCeeeEECC
Confidence 99999999999999987
No 59
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.34 E-value=1e-11 Score=104.67 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=78.9
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccccccccccCCcEecCCCCHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD 292 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~V~dIM~r~~~~V~e~~~l~e 292 (464)
+++.++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++..... ...++.++|.++++.+++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 356789999998 9999999999999999986 689999999999865322 234688888788899999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 012416 293 ILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 293 aL~~m~~~~~~~a~VVDe 310 (464)
+++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04589 79 ALLLMTRHRIHRVVVREG 96 (111)
T ss_pred HHHHHHHhCccEEEEeeC
Confidence 999999999999999986
No 60
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.33 E-value=1.3e-11 Score=104.98 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=79.3
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc--------------ccccccccccCCc
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP 282 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~--------------~~~V~dIM~r~~~ 282 (464)
++.+++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++...... ..++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999998 9999999999999999986 8999999999998654221 2457788888899
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++++.+++..|++.+.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVDD 106 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEECC
Confidence 9999999999999999999999999987
No 61
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.33 E-value=1.5e-11 Score=103.44 Aligned_cols=91 Identities=13% Similarity=0.193 Sum_probs=79.1
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-c---cccccccccccCCcEecCCCCHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---DAVPLRKMIIRRIPRVSEDMPLYD 292 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-~---~~~~V~dIM~r~~~~V~e~~~l~e 292 (464)
++.+++.+.++. ++.+.+.+++++++||+++ ++++|+++.+|++.... . ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 567889999998 9999999999999999985 89999999999875321 1 135688888888999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 012416 293 ILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 293 aL~~m~~~~~~~a~VVDe 310 (464)
+++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04800 79 ALLLMLERGIHHLPVVDD 96 (111)
T ss_pred HHHHHHHcCCCeeeEeEC
Confidence 999999999999999987
No 62
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.32 E-value=1.8e-11 Score=102.72 Aligned_cols=86 Identities=15% Similarity=0.222 Sum_probs=76.2
Q ss_pred EEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHH
Q 012416 219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ 298 (464)
Q Consensus 219 vtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~ 298 (464)
.++++++++. ++++.+.+.+++++||+++ ++++|+++.+|+..... .++.++|..++.+++++.++.++++.|.
T Consensus 4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~ 77 (104)
T cd04594 4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM 77 (104)
T ss_pred eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence 3578999998 9999999999999999985 89999999999986432 2577788888899999999999999999
Q ss_pred hCCCcEEEEEec
Q 012416 299 KGHSHIAVVYKD 310 (464)
Q Consensus 299 ~~~~~~a~VVDe 310 (464)
+++.+.+||+|+
T Consensus 78 ~~~~~~~~Vv~~ 89 (104)
T cd04594 78 KNKTRWCPVVDD 89 (104)
T ss_pred HcCcceEEEEEC
Confidence 999999999986
No 63
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=9.4e-12 Score=104.95 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=74.2
Q ss_pred EcCCCChHHHHHHHHHHcC-----CcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHH
Q 012416 221 LDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN 295 (464)
Q Consensus 221 V~~d~tl~eeal~~m~~~~-----~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~ 295 (464)
+++++++. ++++.|.+++ +..+||++++ ++++|+++.+|++.... ..++.++|..++..+++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLADP--DTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCCC--cchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 57889998 9999998877 4678999865 89999999999986532 34688887777889999999999999
Q ss_pred HHHhCCCcEEEEEec
Q 012416 296 EFQKGHSHIAVVYKD 310 (464)
Q Consensus 296 ~m~~~~~~~a~VVDe 310 (464)
.|.+++.+.+||+|+
T Consensus 78 ~~~~~~~~~~~Vv~~ 92 (109)
T cd04606 78 LFEKYDLLALPVVDE 92 (109)
T ss_pred HHHHcCCceeeeECC
Confidence 999999999999997
No 64
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.2e-11 Score=107.27 Aligned_cols=91 Identities=16% Similarity=0.309 Sum_probs=77.8
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----------------ccccccccccc
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------DAVPLRKMIIR 279 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----------------~~~~V~dIM~r 279 (464)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+...... ...++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 466789999998 99999999999999999876 899999999998743210 12467888888
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (464)
Q Consensus 280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVD 309 (464)
+++++++++++.++++.|.+.+.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999999999985
No 65
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=7.9e-12 Score=109.75 Aligned_cols=92 Identities=14% Similarity=0.286 Sum_probs=79.5
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc--------------------------ccc
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY--------------------------RDA 270 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~--------------------------~~~ 270 (464)
++.++++++++. ++++.|.++++.++||++++ ++++|+++.+|++.... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567889999998 99999999999999999865 89999999999875321 112
Q ss_pred cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.++.++|.+++..+++++++.++++.|.+++.+.+||+|+
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~ 120 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG 120 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC
Confidence 4678888778899999999999999999999999999984
No 66
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.1e-11 Score=102.06 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=78.9
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~ 296 (464)
++++++++.++. ++++.+.+.+++++||++++ ++++|+++.++++.... ..++.++|.+++.++++++++.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 567889999998 89999999999999999876 89999999999986432 235777777888999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 012416 297 FQKGHSHIAVVYKD 310 (464)
Q Consensus 297 m~~~~~~~a~VVDe 310 (464)
|.+++.+.+||+|+
T Consensus 78 ~~~~~~~~~~Vvd~ 91 (106)
T cd04638 78 MVENNIRRVPVVDD 91 (106)
T ss_pred HHHcCCCEEEEEEC
Confidence 99999999999986
No 67
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.32 E-value=1.5e-11 Score=104.78 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=77.5
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC--CCcEEEEEEcchhcccccccccccccccccCCcEecC--CCCHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE--DMPLYD 292 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e--~~~l~e 292 (464)
++.++++++++. ++++.|.+.+++.+||+|+. .++++|+++.+|++.... ...++.++|.+++..+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 566789999998 99999999999999999861 379999999999875432 234688888777777755 999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 012416 293 ILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 293 aL~~m~~~~~~~a~VVDe 310 (464)
+++.|++++.+.+||+|+
T Consensus 81 ~l~~~~~~~~~~~pVv~~ 98 (114)
T cd04602 81 ANEILRESKKGKLPIVND 98 (114)
T ss_pred HHHHHHhcCCCceeEECC
Confidence 999999999999999987
No 68
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=1.2e-11 Score=104.24 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=79.3
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCCCCHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~~~l~e 292 (464)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.++++...... ..++.++|.+++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 455688999998 99999998899999999875 8999999999987654321 24688998888899999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 012416 293 ILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 293 aL~~m~~~~~~~a~VVDe 310 (464)
+++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~Vv~~ 98 (114)
T cd04604 81 ALELMEENKITALPVVDD 98 (114)
T ss_pred HHHHHHHcCCCEEEEECC
Confidence 999999999999999986
No 69
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.31 E-value=1.5e-11 Score=103.71 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=77.9
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-c---c-ccccccccccCCcEecCCCCHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---D-AVPLRKMIIRRIPRVSEDMPLY 291 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-~---~-~~~V~dIM~r~~~~V~e~~~l~ 291 (464)
++.++++++++. ++.+.|.+++.+.+||+++ ++++|+|+.+|++.... . . ..++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 567789999998 9999999999999999985 89999999999874221 1 1 1568888878888999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 012416 292 DILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 292 eaL~~m~~~~~~~a~VVDe 310 (464)
++++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~l~Vv~~ 97 (113)
T cd04587 79 EALHLMVQGKFRHLPVVDK 97 (113)
T ss_pred HHHHHHHHcCCCcccEECC
Confidence 9999999999999999997
No 70
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.31 E-value=3.8e-12 Score=111.19 Aligned_cols=92 Identities=18% Similarity=0.297 Sum_probs=75.4
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc----ccccccccccccCCcEecCCCCHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMIIRRIPRVSEDMPLYD 292 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~----~~~~~V~dIM~r~~~~V~e~~~l~e 292 (464)
++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++.... ....++.++|.+++.++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 567899999998 99999999999999999875 78999999999985321 2246899999999999999999999
Q ss_pred HHHHHHhC---------CCcEEEEEec
Q 012416 293 ILNEFQKG---------HSHIAVVYKD 310 (464)
Q Consensus 293 aL~~m~~~---------~~~~a~VVDe 310 (464)
+.+.|... +.+.+||+|+
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~ 107 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEK 107 (124)
T ss_pred HHhhcccCCceEEEecccccccccccc
Confidence 99976432 4455556654
No 71
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2.1e-11 Score=101.76 Aligned_cols=79 Identities=8% Similarity=0.185 Sum_probs=71.2
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~ 296 (464)
++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|+.... .+.++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence 567889999998 99999999999999999865 8999999999998642 17789999999999999
Q ss_pred HHhCCCcEEEEEec
Q 012416 297 FQKGHSHIAVVYKD 310 (464)
Q Consensus 297 m~~~~~~~a~VVDe 310 (464)
|.+++.+.+||+|+
T Consensus 67 m~~~~~~~lpVv~~ 80 (96)
T cd04614 67 MKRNRIEQIPIING 80 (96)
T ss_pred HHHhCCCeeeEECC
Confidence 99999999999997
No 72
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=1.5e-11 Score=105.46 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=79.0
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--------------cccccccccccCCc
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 282 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--------------~~~~V~dIM~r~~~ 282 (464)
++.++++++++. ++.+.+.+++++++||+++ ++++|+++.+|+.+.... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 567889999998 9999999999999999985 799999999999764211 12357888888899
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++++.++++.|.+++.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~~ 106 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVDE 106 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEECC
Confidence 9999999999999999999999999987
No 73
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.31 E-value=1.6e-11 Score=104.06 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=76.0
Q ss_pred cceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC--CCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHH
Q 012416 216 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDI 293 (464)
Q Consensus 216 ~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~ea 293 (464)
.+...+++++++. ++.+.+.+++++++||+++. .++++|+|+.+|+...... +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 4677889999998 99999999999999999862 3789999999999865432 677888899999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 012416 294 LNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 294 L~~m~~~~~~~a~VVDe 310 (464)
++.|++++.+.+||+++
T Consensus 74 ~~~~~~~~~~~~pVv~~ 90 (105)
T cd04591 74 HQLFRKLGLRHLLVVDE 90 (105)
T ss_pred HHHHHHcCCCEEEEEEC
Confidence 99999999999999965
No 74
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=2e-11 Score=103.53 Aligned_cols=91 Identities=14% Similarity=0.334 Sum_probs=75.7
Q ss_pred ceEEEcCCCChHHHHHHHHHHcC-CcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCC--CC
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSED--MP 289 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~-~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~--~~ 289 (464)
++.+++.+.++. ++++.|.+++ +..+||.+ + ++++|+++.+|++.....+ ..++.++|.+++++++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 346789999998 9999998888 66778776 3 7899999999998643221 246888887888889887 78
Q ss_pred HHHHHHHHHhCCCcEEEEEec
Q 012416 290 LYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 290 l~eaL~~m~~~~~~~a~VVDe 310 (464)
+.++++.|.+++.+.+||+|+
T Consensus 79 l~~a~~~~~~~~~~~~pVvd~ 99 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLDD 99 (115)
T ss_pred HHHHHHHHHHhCCceEEEEcC
Confidence 999999999999999999997
No 75
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=3.5e-11 Score=101.42 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=78.6
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-----ccccccccccccCCcEecCCCCHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRRIPRVSEDMPLY 291 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-----~~~~~V~dIM~r~~~~V~e~~~l~ 291 (464)
+++++++++++. ++++.|.+++++.+||+++ ++++|+++.+|++.... ....++.++|.++++++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999998 9999999999999999985 48999999999986431 123468888877888999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 012416 292 DILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 292 eaL~~m~~~~~~~a~VVDe 310 (464)
++++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~~Vv~~ 97 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVDD 97 (112)
T ss_pred HHHHHHHHcCCCeeEEeeC
Confidence 9999999999999999987
No 76
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.28 E-value=1.9e-11 Score=129.81 Aligned_cols=105 Identities=20% Similarity=0.362 Sum_probs=86.8
Q ss_pred HHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----cccc
Q 012416 197 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVP 272 (464)
Q Consensus 197 I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~----~~~~ 272 (464)
..+. ++.++|+++|.+ ++.++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++.... ...+
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~ 401 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDA 401 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCC
Confidence 4455 688999999985 688999999998 99999999999999999865 899999999999864322 1346
Q ss_pred cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416 273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (464)
Q Consensus 273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVD 309 (464)
+.++|.++++++++++++.++++.|.+++ ..+|++
T Consensus 402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~ 436 (454)
T TIGR01137 402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS--SAIVTE 436 (454)
T ss_pred HHHhcCCCCeEECCcCcHHHHHHHHHHCC--eeEEEE
Confidence 88998888889999999999999998864 344444
No 77
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.28 E-value=4e-11 Score=129.11 Aligned_cols=136 Identities=9% Similarity=0.108 Sum_probs=100.6
Q ss_pred cCCHHHHHHHHhhccccc-ccCCCCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEee
Q 012416 166 LLRRAELKTFVNFHGNEA-GKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244 (464)
Q Consensus 166 ~~s~eEL~~lve~~~~e~-~~~G~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~P 244 (464)
..++.++-..+...|--+ --.+.=.++.+..++.+.+.. ..|++ +++++++++|+. ++++.|.+++++.+|
T Consensus 64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lp 135 (505)
T PLN02274 64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVC 135 (505)
T ss_pred ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEE
Confidence 456667666554211000 000111334456677777542 22663 778999999998 999999999999999
Q ss_pred EEecC--CCcEEEEEEcchhcccccccccccccccccC--CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 245 VYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 245 Vvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~--~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
|++++ .++++|+|+.+|+.... ..+.++.++|.++ ++++++++++.++++.|.+++.+.+||+|+
T Consensus 136 VvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~ 204 (505)
T PLN02274 136 VTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE 204 (505)
T ss_pred EEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 99863 27899999999997543 3346899998766 679999999999999999999999999997
No 78
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=4.5e-11 Score=100.72 Aligned_cols=91 Identities=13% Similarity=0.247 Sum_probs=78.0
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc-ccc----cccccccccccCCcEecCCCCHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV-DYR----DAVPLRKMIIRRIPRVSEDMPLY 291 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~-~~~----~~~~V~dIM~r~~~~V~e~~~l~ 291 (464)
++.++++++++. ++.+.|.+.+++.+||+++ ++++|+++.+|++.. ... ...++.++|.+.+.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 467889999998 9999999999999999985 899999999998632 111 12248888888889999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 012416 292 DILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 292 eaL~~m~~~~~~~a~VVDe 310 (464)
++++.|.+.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~~V~~~ 97 (113)
T cd04622 79 EAARLMREHQVRRLPVVDD 97 (113)
T ss_pred HHHHHHHHcCCCeeeEECC
Confidence 9999999999999999987
No 79
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.27 E-value=2e-11 Score=131.24 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=88.7
Q ss_pred hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC--CCcEEEEEEcchhcccccc
Q 012416 191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR 268 (464)
Q Consensus 191 ~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~~ 268 (464)
+++++++..+.++. .+.++.| .++++++|+. ++++.|.+++++.+||+|++ .++++|+|+.+|+......
T Consensus 87 e~qa~lV~kVk~~~---~g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~ 158 (502)
T PRK07107 87 ESEAAMVRRVKNYK---AGFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS 158 (502)
T ss_pred HHHHHHHHHHHHHh---cCCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence 55565555555433 2222322 4789999999 99999999999999999852 3799999999999754323
Q ss_pred ccccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 269 DAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 269 ~~~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.+.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|+
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~ 202 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK 202 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 34689999875 6778999999999999999999999999997
No 80
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=4e-11 Score=102.49 Aligned_cols=91 Identities=15% Similarity=0.304 Sum_probs=78.9
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc--------------cccccccccccCCc
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 282 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--------------~~~~V~dIM~r~~~ 282 (464)
+++++++++++. ++.+.|.+.+++++||+++ ++++|+++.+|++..... ...++.++|.+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456789999998 9999999999999999985 899999999998764321 13467788878899
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++++.++++.|.+.+.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVDD 106 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence 9999999999999999999999999987
No 81
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.3e-11 Score=100.34 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=77.2
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-----cccccccccccCCcEecCCCCHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 291 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-----~~~~V~dIM~r~~~~V~e~~~l~ 291 (464)
++.++++++++. ++++.+.+++++.+||.+ + ++++|+++.+|+++.... ...++.++|..++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567889999998 999999888888887765 4 799999999999865321 13468899877788999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 012416 292 DILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 292 eaL~~m~~~~~~~a~VVDe 310 (464)
++++.|.+++...+||+|+
T Consensus 79 ~a~~~m~~~~~~~l~Vv~~ 97 (112)
T cd04625 79 EVRRLMVERHLRYLPVLDG 97 (112)
T ss_pred HHHHHHHHcCCCeeeEEEC
Confidence 9999999999999999986
No 82
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.26 E-value=3.6e-11 Score=102.54 Aligned_cols=92 Identities=11% Similarity=0.193 Sum_probs=79.3
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc-------------ccccccccccccCCcE
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 283 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~-------------~~~~~V~dIM~r~~~~ 283 (464)
++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+..... ....++.++|..++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456789999998 99999999999999999876 89999999999875431 1124678888888899
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 284 V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++++++.++++.|.+++.+.+||+|+
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~~ 106 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVED 106 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence 999999999999999999999999986
No 83
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.25 E-value=4.9e-11 Score=99.64 Aligned_cols=89 Identities=22% Similarity=0.437 Sum_probs=74.7
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----ccccccccccCCcEecCCCCHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----~~~V~dIM~r~~~~V~e~~~l~e 292 (464)
++.+++.++++. ++.+.|.+++++++||+++ ++++|+++.+|+.+..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 456789999998 9999999999999999985 7999999999998764322 24678888788889999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 012416 293 ILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 293 aL~~m~~~~~~~a~VVDe 310 (464)
+++.|++ .. .+||+|+
T Consensus 79 ~~~~~~~-~~-~~~vv~~ 94 (110)
T cd04609 79 LSELLDR-GN-VAVVVDE 94 (110)
T ss_pred HHHHHHh-CC-ceeEEec
Confidence 9999998 33 4788887
No 84
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.23 E-value=6.8e-11 Score=127.14 Aligned_cols=133 Identities=10% Similarity=0.197 Sum_probs=100.6
Q ss_pred ccCCHHHHHHHHhhcccccccCCCC----C-hhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcC
Q 012416 165 VLLRRAELKTFVNFHGNEAGKGGDL----T-HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 239 (464)
Q Consensus 165 ~~~s~eEL~~lve~~~~e~~~~G~L----~-~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~ 239 (464)
..+|+.++...+...| --|.| + ++..+.++.+.+ +++.|++ +++++++++|+. ++++.|.+++
T Consensus 59 ~~vt~~~ma~a~a~~G----glGvi~~~~~~e~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~ 126 (495)
T PTZ00314 59 DTVTEHKMAIAMALMG----GIGVIHNNCSIEEQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKG 126 (495)
T ss_pred cccccHHHHHHHHHCC----CeEEecCCCCHHHHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcC
Confidence 3456667665554321 11222 2 234555665554 4446664 667899999998 9999999999
Q ss_pred CcEeeEEecC--CCcEEEEEEcchhccccccccccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 240 HSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 240 ~Sr~PVvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++.+||++++ .++++|+|+.+|+.... ....++.++|.+ +++++++++++.++++.|.+++.+.+||+|+
T Consensus 127 ~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~ 200 (495)
T PTZ00314 127 FSSILITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND 200 (495)
T ss_pred CcEEEEEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC
Confidence 9999999863 36899999999997443 234679999876 7889999999999999999999999999998
No 85
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.23 E-value=7.4e-11 Score=126.13 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=89.1
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP 282 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~ 282 (464)
+...+++++|++ +++++++++++. ++++.|.+++++.+||+++ ++++|+|+.+|+..... ..++.++|.+++.
T Consensus 85 v~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~li 157 (475)
T TIGR01303 85 VAFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLV 157 (475)
T ss_pred Hhhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCce
Confidence 346678899985 668899999998 9999999999999999874 68999999999975432 3579999999999
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++++.++++.|.+++.+.+||+|+
T Consensus 158 tv~~~~sL~eAl~lM~~~~i~~LPVVD~ 185 (475)
T TIGR01303 158 TAPADTEPRKAFDLLEHAPRDVAPLVDA 185 (475)
T ss_pred EeCCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 9999999999999999999999999997
No 86
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.22 E-value=1.1e-10 Score=96.43 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=79.0
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc----cccccccccCCcEecCCCCHHH
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA----VPLRKMIIRRIPRVSEDMPLYD 292 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~----~~V~dIM~r~~~~V~e~~~l~e 292 (464)
++..++.+.++. ++.+.+.+++++++||++++ ++++|+++.+|+........ ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456789999998 99999999999999999875 89999999999987553321 1156677888999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 012416 293 ILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 293 aL~~m~~~~~~~a~VVDe 310 (464)
+++.|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~V~~~ 97 (113)
T cd02205 80 AAELMLEHGIRRLPVVDD 97 (113)
T ss_pred HHHHHHHcCCCEEEEEcC
Confidence 999999999999999998
No 87
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=6.9e-11 Score=100.69 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=74.9
Q ss_pred ceEEEcCCCChHHHHHHHHHHcC-CcEeeEEecCCCcEEEEEEcchhcccccc-------cccccccccccCCcEecCCC
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR-------DAVPLRKMIIRRIPRVSEDM 288 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~-~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-------~~~~V~dIM~r~~~~V~e~~ 288 (464)
++.++++++++. ++.+.+...+ ++.+||+++ ++++|+++.+|++..... ...++.++|..++.++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 345689999998 9999998877 899999986 899999999998754321 23578899888888999999
Q ss_pred CHHHHHHHHHhCCCc---EEEEEec
Q 012416 289 PLYDILNEFQKGHSH---IAVVYKD 310 (464)
Q Consensus 289 ~l~eaL~~m~~~~~~---~a~VVDe 310 (464)
++.+++..|.+++.. ..+|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~~ 103 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVTE 103 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEee
Confidence 999999999988753 3467877
No 88
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.21 E-value=5e-11 Score=117.55 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=89.7
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---cccccccccccCCc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIP 282 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---~~~~V~dIM~r~~~ 282 (464)
.+|+++|.+. ++.++++++++. ++++.|.+.+++.+||++++ ++++|+|+.+|+.+.... ...++.++|.++++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999863 277899999998 99999999999999999876 899999999999865322 24578999988899
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 283 ~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++++.++++.|.+++.+.+||+|+
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 259 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDD 259 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence 9999999999999999999999999997
No 89
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.19 E-value=2.1e-10 Score=97.01 Aligned_cols=96 Identities=23% Similarity=0.386 Sum_probs=84.1
Q ss_pred cccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc--c-ccccccccCCcEecC
Q 012416 210 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--V-PLRKMIIRRIPRVSE 286 (464)
Q Consensus 210 dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~--~-~V~dIM~r~~~~V~e 286 (464)
++|. .+++++.++.++. ++...|.+++++.+||.++ ++++|+++.+|+.++..... . ++.++|.+++.++.+
T Consensus 3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~ 77 (117)
T COG0517 3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP 77 (117)
T ss_pred cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence 4454 4788999999998 9999999999999999975 37999999999998765432 1 488898889999999
Q ss_pred CCCHHHHHHHHHh-CCCcEEEEEec
Q 012416 287 DMPLYDILNEFQK-GHSHIAVVYKD 310 (464)
Q Consensus 287 ~~~l~eaL~~m~~-~~~~~a~VVDe 310 (464)
+.++.++++.|.+ ++.+.+||+|+
T Consensus 78 ~~~~~~~~~~m~~~~~~~~lpVv~~ 102 (117)
T COG0517 78 DTPLEEALELMVERHKIRRLPVVDD 102 (117)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEEC
Confidence 9999999999999 79999999998
No 90
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=1.4e-10 Score=103.52 Aligned_cols=91 Identities=16% Similarity=0.308 Sum_probs=78.4
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc----------------------------
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------------------- 268 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---------------------------- 268 (464)
++++++.++++. ++.+.|.+.+++.+||+++ ++++|+++.+|++.....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 467899999998 9999999999999999985 799999999998754211
Q ss_pred --------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 269 --------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 269 --------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
...++.++|.+++.++++++++.+++..|++.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~ 128 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED 128 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 123567788888999999999999999999999999999987
No 91
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.08 E-value=2.6e-10 Score=120.93 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=91.1
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc----ccccccccccc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMII 278 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~----~~~~~V~dIM~ 278 (464)
+--.+++++|+. +.+++++.+|+. ++.+.|.+.|.|.+.|++++ +...|||+.+|+....- +.+.+|.++|+
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT 221 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT 221 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence 344568888885 567899999998 99999999999988888865 89999999999986532 22578999999
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 279 r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.|+.+|..++.+.+|+-.|.+++++.+||.++
T Consensus 222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~e~ 253 (610)
T COG2905 222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED 253 (610)
T ss_pred cCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence 99999999999999999999999999999976
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.97 E-value=2.3e-09 Score=95.54 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=77.6
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc---cc------------ccccc----
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VP------------LRKMI---- 277 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~---~~------------V~dIM---- 277 (464)
++.++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++...... .. +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 677899999999 99999999999999999875 89999999999987543221 01 23354
Q ss_pred -----ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 012416 278 -----IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 311 (464)
Q Consensus 278 -----~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDey 311 (464)
.++++++++++++.++++.|.+++.+.+||+|+.
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 3668899999999999999999999999999973
No 93
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.92 E-value=8.8e-09 Score=112.18 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=50.3
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
..+|+|+|++ +++++++++++. ++++.|.+++++++||+|++ |+++|+|+.+|+.+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~ 122 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLAR 122 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHH
Confidence 3689999985 778999999998 99999999999999999875 89999999999864
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.65 E-value=7.8e-08 Score=72.30 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=35.8
Q ss_pred cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++|.++++++++++++.++++.|++++.+.+||+|+
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~ 38 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE 38 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec
Confidence 46788889999999999999999999999999999998
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.58 E-value=6.2e-08 Score=72.85 Aligned_cols=55 Identities=29% Similarity=0.496 Sum_probs=50.5
Q ss_pred cccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (464)
Q Consensus 208 V~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~ 266 (464)
|+++|++ +++++++++++. ++.+.|.+++++++||+|++ ++++|+++.+|++++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence 5789997 789999999998 99999999999999999876 9999999999998754
No 96
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=9e-07 Score=93.17 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=80.3
Q ss_pred cccccccccCcc-eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEe
Q 012416 206 KTAKDAMTPISK-AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV 284 (464)
Q Consensus 206 itV~dIMtPR~d-vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V 284 (464)
.++.++|.+... .+...++.+.. ++++.|.+.+.+++.|+|++ ++++|+++.+++....... .++.+.+.....+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-QGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-CchhhhhccCCcee
Confidence 567888854221 22344666777 89999999999999999876 8999999999997654332 35777767778899
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 285 SEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 285 ~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++++++.+++..|.+.... +||+|+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~~ 375 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVDE 375 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEECC
Confidence 9999999999999998877 899997
No 97
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.40 E-value=1.7e-06 Score=90.56 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=75.4
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc-----cc-cccc------cccCCcEe
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-----VP-LRKM------IIRRIPRV 284 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~-----~~-V~dI------M~r~~~~V 284 (464)
++..+..+.++. ++++.|...+++.+||++.. ++.+|.++..|+.....+.. .. +++. -..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588899999998 99999999999999999876 77799999999976544321 11 2211 12236789
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 285 SEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 285 ~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.++.++.+++.+|..+++|.+.|||+
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd~ 341 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVDE 341 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEcC
Confidence 99999999999999999999999998
No 98
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.35 E-value=5.1e-06 Score=86.47 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=73.8
Q ss_pred EEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHH
Q 012416 219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ 298 (464)
Q Consensus 219 vtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~ 298 (464)
....++.+.. ++++.+...+.....|++++ +++.|+++.+++....... ..+.+.|....+++++++++.+++..|.
T Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (363)
T TIGR01186 253 ITKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVL 329 (363)
T ss_pred eeecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHH
Confidence 3456677887 89999999999999999876 8999999999987654432 3577777777889999999999999999
Q ss_pred hCCCcEEEEEec
Q 012416 299 KGHSHIAVVYKD 310 (464)
Q Consensus 299 ~~~~~~a~VVDe 310 (464)
+++.. +||+|+
T Consensus 330 ~~~~~-~~v~~~ 340 (363)
T TIGR01186 330 KAGIK-VPVVDE 340 (363)
T ss_pred hCCCC-EEEECC
Confidence 99999 999997
No 99
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.31 E-value=6.8e-07 Score=96.08 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=85.2
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCC----CcEEEEEEcchhcccccc----------
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP----TNIIGLILVKNLLSVDYR---------- 268 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~----d~iVGIVt~kDLl~~~~~---------- 268 (464)
+++.+|+|+|.+ ++++++.-..+. .+.+.++.+.|..|||+|+.. +++.|++-...++.....
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 356789999996 899999999998 899999999999999998543 367888887776521100
Q ss_pred ----------------c----------------ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 269 ----------------D----------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 269 ----------------~----------------~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+ -.++..+|...|++|++++++..++..|+.-+.+.+.||+.
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~ 729 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK 729 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC
Confidence 0 13345666677899999999999999999999999999987
No 100
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.20 E-value=3.3e-06 Score=87.07 Aligned_cols=137 Identities=11% Similarity=0.131 Sum_probs=105.1
Q ss_pred ccCCHHHHHHHHhhcccccccCC-CCChhHHHHHHHhhcccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEe
Q 012416 165 VLLRRAELKTFVNFHGNEAGKGG-DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV 243 (464)
Q Consensus 165 ~~~s~eEL~~lve~~~~e~~~~G-~L~~~E~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~ 243 (464)
+.+++.|....+.+++--+-=.. -=.+++..+++.+-.|.. .-++ +.+.+.++.++. ++++.-.+++++.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~---g~~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYEN---GFIN----NPIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhc---cccc----CCcccCCcccch-hhhhhccccccccc
Confidence 46678887766655421000000 115667888888887764 2233 346688999999 99999999999999
Q ss_pred eEEecC--CCcEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 244 PVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 244 PVvd~d--~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
||.++. ..+++|+|+.+|+-.. .+....+.++|+..+++.|...++.++=+.+++.+-..+||||+
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~ 210 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD 210 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc
Confidence 999632 3689999999998655 44567899999988899999999999999999999999999998
No 101
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.98 E-value=4.1e-06 Score=89.49 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=82.4
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccccccCCcE
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR 283 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~ 283 (464)
++.+++++|+| ++.++++++++. ++++.|.++++..+||+|++ |+++|+|+.+|++....++ .-+++|.....+
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence 56789999986 678899999998 99999999999999999876 8999999999999876554 236776555554
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEE
Q 012416 284 VSEDMPLYDILNEFQKGHSHIAVVY 308 (464)
Q Consensus 284 V~e~~~l~eaL~~m~~~~~~~a~VV 308 (464)
..++..+.+++..|.+++...++|.
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v~ 291 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLVL 291 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHHH
Confidence 4466788999999999999998885
No 102
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.87 E-value=3.4e-05 Score=75.61 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=38.9
Q ss_pred ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
..++.++|.+++.++.+++++.++.+.|.+++++-+||+|+
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~ 211 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD 211 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC
Confidence 35789999999999999999999999999999999999997
No 103
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.83 E-value=3.2e-05 Score=65.41 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=49.6
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 3568999974 567899999998 99999999999999999876 89999999999875
No 104
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.75 E-value=6.3e-05 Score=62.97 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=51.0
Q ss_pred cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+....++.++|.+ ++.++++++++. ++++.+.+++.+++||++++ ++++|+|+.+|+++
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 4455679999986 567889999998 99999999999999999865 89999999999875
No 105
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.71 E-value=6.9e-05 Score=63.20 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=50.5
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+..++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 467889998644566899999998 99999999999999999864 79999999999874
No 106
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.71 E-value=9e-05 Score=63.64 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=49.1
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+|+++|.+ ++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999985 677889999998 99999999999999999865 79999999999864
No 107
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.66 E-value=8.3e-05 Score=63.06 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=50.1
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|.. ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 34678899964 677899999998 99999999999999999865 79999999999874
No 108
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.66 E-value=0.00011 Score=62.74 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=50.9
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCC--CcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--TNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~--d~iVGIVt~kDLl~ 264 (464)
.+.++.++|+.-.++.++++++++. ++++.|.+++++++||++++. ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 4667889997323578999999998 999999999999999998652 58999999999874
No 109
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.65 E-value=0.00015 Score=78.62 Aligned_cols=103 Identities=15% Similarity=0.222 Sum_probs=74.3
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccc---cccccccc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIR 279 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~---~V~dIM~r 279 (464)
..+.+|+++|++..+++++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|+++....... ..+.++.-
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~ 235 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPLELLDSSKRYVVG 235 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChhhhhhhccCeeee
Confidence 45678999999867889999999998 99999999999999999865 789999999999876422100 01111110
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
..+... ...+-.+.+.+.+.+.+.|-..
T Consensus 236 --~av~~~-~~~~ra~~Lv~aGvd~i~vd~a 263 (502)
T PRK07107 236 --AGINTR-DYAERVPALVEAGADVLCIDSS 263 (502)
T ss_pred --eccChh-hHHHHHHHHHHhCCCeEeecCc
Confidence 123332 3456677788888888765433
No 110
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00023 Score=77.21 Aligned_cols=102 Identities=22% Similarity=0.285 Sum_probs=76.9
Q ss_pred cccccccCc---ceEEEcCC-CChHHHHHHHHHHcCCcEeeEE-ecCCCcEEEEEEcchhcccccc--------------
Q 012416 208 AKDAMTPIS---KAFSLDLD-ATLTLDTLNAIMTMGHSRVPVY-SGNPTNIIGLILVKNLLSVDYR-------------- 268 (464)
Q Consensus 208 V~dIMtPR~---dvvtV~~d-~tl~eeal~~m~~~~~Sr~PVv-d~d~d~iVGIVt~kDLl~~~~~-------------- 268 (464)
..++|.|+. ....++.+ .+++ +....|.++.|+.+||+ +++.++++|+|..||+......
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 445554433 34555555 8998 99999999999999987 5556889999999998632110
Q ss_pred -------------cccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 269 -------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 269 -------------~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
....++++|...|.+|..++|...++++|++-+.....|..+
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~ 678 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN 678 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC
Confidence 023467787777889999999999999999999888877543
No 111
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.62 E-value=7.1e-05 Score=81.75 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=79.4
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---------------
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------- 268 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~--------------- 268 (464)
...+|+++|+. .+++++++++++. ++.+.|.+++++.+||+|++ |+++|+++.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 36789999982 3788999999998 99999999999999999876 899999999999864321
Q ss_pred ----c-------ccccccccccCCcEe---cCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416 269 ----D-------AVPLRKMIIRRIPRV---SEDMPLYDILNEFQKGHSHIAVVYK 309 (464)
Q Consensus 269 ----~-------~~~V~dIM~r~~~~V---~e~~~l~eaL~~m~~~~~~~a~VVD 309 (464)
. ..++.++|.+.|..+ +...+...+.+.|++.+....|++.
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia 375 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA 375 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH
Confidence 0 113455665555544 4456667888889998888777764
No 112
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.59 E-value=0.00013 Score=62.62 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=37.2
Q ss_pred cccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 271 ~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~ 97 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD 97 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC
Confidence 4688998888999999999999999999999999999997
No 113
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.51 E-value=0.00019 Score=60.43 Aligned_cols=56 Identities=14% Similarity=0.354 Sum_probs=49.1
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+ .+.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3568899975 567899999998 99999999999999999865 89999999999874
No 114
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.49 E-value=0.00027 Score=76.20 Aligned_cols=95 Identities=11% Similarity=0.176 Sum_probs=72.2
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccccccc----cccCC
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM----IIRRI 281 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dI----M~r~~ 281 (464)
.+++++|++ +++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..... +..+. +....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999985 788999999998 99999999999999999875 7999999999999764332 11111 11111
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416 282 PRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (464)
Q Consensus 282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVD 309 (464)
+.-.....+.+..|.+.+.+. +++|
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D 246 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVD 246 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence 333345778888898898888 5566
No 115
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.48 E-value=0.00018 Score=60.68 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=51.1
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
..+.++.++|.+ ++.++++++++. ++++.|.+.+.+++||++++ |+++|+|+.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 356779999975 678899999998 99999999999999999865 79999999999875
No 116
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.46 E-value=0.00022 Score=60.77 Aligned_cols=58 Identities=21% Similarity=0.452 Sum_probs=51.1
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
....+++++|.+ ++.++++++++. ++++.|.+++.+++||++++ |+++|+++.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 356679999975 678899999998 99999999999999999864 89999999999875
No 117
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.45 E-value=0.00027 Score=59.07 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=41.9
Q ss_pred eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.+++++. ++++.|.+++..++||++++.|+++|+++.+|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999998 99999999999999999864478999999999875
No 118
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.44 E-value=0.00082 Score=70.50 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=76.5
Q ss_pred ccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc----------ccccccc---ccc
Q 012416 213 TPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----------AVPLRKM---IIR 279 (464)
Q Consensus 213 tPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~----------~~~V~dI---M~r 279 (464)
+++...+.+.+..++- ++...+.++++.|+||.|.+.++++.+++.+-+++..... ..++.++ +..
T Consensus 159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 4444547888898887 8888999999999999985568999999999998754321 1122222 123
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.+..+.+++++.++++.|..++..-+||||+
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~ 268 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDE 268 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence 4677999999999999999999999999998
No 119
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.43 E-value=0.00016 Score=62.50 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=47.7
Q ss_pred cccccccccccCcceEEEc----CCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLD----LDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~----~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|++...++.++ +++++. ++++.|.+++.+++||++++.++++|+|+.+|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567899997533333443 688998 99999999999999999864358999999999875
No 120
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00027 Score=59.10 Aligned_cols=55 Identities=16% Similarity=0.377 Sum_probs=48.5
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+++.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4579999964 567899999998 9999999999999999973 79999999999875
No 121
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.42 E-value=0.00029 Score=59.34 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=48.0
Q ss_pred ccccccccccCcceEEEcCC--CChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLD--ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d--~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+ ++.+++++ +++. ++++.|.+++...+||++++ |+++|+|+.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 4678899975 56777776 6888 89999999999999999875 89999999999875
No 122
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.41 E-value=0.00028 Score=59.57 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=49.5
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|.. ++.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|++.
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 45678899964 678999999998 9999999999999999975 79999999999875
No 123
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.40 E-value=0.0003 Score=58.22 Aligned_cols=56 Identities=20% Similarity=0.418 Sum_probs=48.9
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.+++++|.+ ...++++++++. ++++.|.+++..++||++++ |+++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3568899975 467789999998 99999999999999999875 79999999999875
No 124
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.00015 Score=72.44 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=38.6
Q ss_pred ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
..+..+||.|++.+|++++++.++.++|++++++-+||+||
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~ 284 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE 284 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc
Confidence 35678899999999999999999999999999999999998
No 125
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.39 E-value=0.00043 Score=57.28 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=47.4
Q ss_pred ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+++++|.+ ...++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47889976 456789999998 99999999999999999875 78999999999874
No 126
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.38 E-value=0.00032 Score=58.64 Aligned_cols=57 Identities=18% Similarity=0.391 Sum_probs=50.1
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|.+ ++.++++++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 35679999975 577899999998 99999999999999999865 79999999999874
No 127
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.35 E-value=0.00028 Score=71.91 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=51.8
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~ 265 (464)
+.+.+|+++|++ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|++++
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999986 678999999998 9999999999999999974 789999999999864
No 128
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.00039 Score=59.63 Aligned_cols=52 Identities=29% Similarity=0.334 Sum_probs=45.4
Q ss_pred cccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhc
Q 012416 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL 263 (464)
Q Consensus 208 V~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl 263 (464)
+.++|.+ ++.+++++.++. ++++.|.+++.+++||++++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 3456764 678899999998 99999999999999999875 7899999999975
No 129
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.35 E-value=0.00065 Score=73.46 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=72.6
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccc---ccccccccCC
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRRI 281 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~---~V~dIM~r~~ 281 (464)
+.+++++|++ .+++++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|++........ .-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4579999984 3678999999998 99999999999999999876 899999999999875422110 1112222222
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
..+.++ -.+.++.|.+.+.+.+ |+|.
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvi-vvD~ 248 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVL-VVDT 248 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEE-EEEC
Confidence 333332 2788889999999955 6664
No 130
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.00041 Score=57.77 Aligned_cols=55 Identities=15% Similarity=0.421 Sum_probs=49.0
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.+++++|.+ ++.+++++.++. ++++.+.+.+.+++||+++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 5678999975 678899999998 9999999999999999985 79999999999875
No 131
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.33 E-value=0.00071 Score=72.92 Aligned_cols=98 Identities=10% Similarity=0.106 Sum_probs=71.3
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccccccccccc--CCc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RIP 282 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~V~dIM~r--~~~ 282 (464)
..+++++|++ +++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..... +..+..-+ ---
T Consensus 145 ~~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vga 218 (475)
T TIGR01303 145 FTQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGA 218 (475)
T ss_pred CCCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehh
Confidence 3579999985 788999999998 99999999999999999865 8899999999999754332 22111000 001
Q ss_pred EecCCCCHHHHHHHHHhCCCcEEEEEe
Q 012416 283 RVSEDMPLYDILNEFQKGHSHIAVVYK 309 (464)
Q Consensus 283 ~V~e~~~l~eaL~~m~~~~~~~a~VVD 309 (464)
.+.......+.+..|.+.+.+.+ |+|
T Consensus 219 av~~~~~~~~ra~~Lv~aGVd~i-~~D 244 (475)
T TIGR01303 219 AVGINGDVGGKAKALLDAGVDVL-VID 244 (475)
T ss_pred eeeeCccHHHHHHHHHHhCCCEE-EEe
Confidence 13444566777888888887775 445
No 132
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.33 E-value=0.00035 Score=58.41 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=48.7
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.++.++|.+ ...++++++++. ++++.+.+++..++||++++ ++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 578899965 567889999998 99999999999999999875 89999999999874
No 133
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.31 E-value=0.00044 Score=57.93 Aligned_cols=57 Identities=14% Similarity=0.341 Sum_probs=49.6
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.++.++|.+ ++.+++.++++. ++++.|.+++..++||++++ |+++|+++.+|++.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 45678889974 678899999998 99999999999999999865 79999999999874
No 134
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.30 E-value=0.00047 Score=57.64 Aligned_cols=55 Identities=18% Similarity=0.339 Sum_probs=48.4
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.++.++|.+ ++.++++++++. ++++.|.+.+.+++||++++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 458999975 567889999998 99999999999999999865 89999999999875
No 135
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00043 Score=59.09 Aligned_cols=57 Identities=16% Similarity=0.405 Sum_probs=50.1
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.++.++|.+ .+.++++++++. ++++.|.+.+.+.+||++++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 45678899975 678899999998 99999999999999999865 78999999999875
No 136
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.27 E-value=0.001 Score=72.18 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=73.3
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccccc---ccccccccC
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRR 280 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~---~V~dIM~r~ 280 (464)
.+.+++++|+|+.++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|+++....... .-..++.
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~a~~D~~GrL~V-- 232 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPNASLDSNGQLLV-- 232 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCchhhhccCCCEEE--
Confidence 3578999999877899999999998 99999999999999999876 899999999999976422100 0011111
Q ss_pred CcEecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 012416 281 IPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 312 (464)
Q Consensus 281 ~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG 312 (464)
-..+.......+-++.+.+.+.+.+.|--.+|
T Consensus 233 gaavg~~~~~~~~~~~l~~ag~d~i~id~a~G 264 (495)
T PTZ00314 233 GAAISTRPEDIERAAALIEAGVDVLVVDSSQG 264 (495)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 11233333335666677777777765533334
No 137
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.27 E-value=0.00052 Score=60.63 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=49.5
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|++ ++..+++++++. ++++.|.++++.++||+++ ++++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 35689999975 567899999998 9999999999999999975 79999999999875
No 138
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.26 E-value=0.001 Score=55.83 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=47.6
Q ss_pred ccccccccCcceEEEcCCCChHHHHHHHHHH-cCCcEeeEEecCCC-cEEEEEEcchhc
Q 012416 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMT-MGHSRVPVYSGNPT-NIIGLILVKNLL 263 (464)
Q Consensus 207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~-~~~Sr~PVvd~d~d-~iVGIVt~kDLl 263 (464)
+++++|++ +++++.++.++. ++.+.|.+ ++++++||++++ + +++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence 69999985 678999999998 99999999 799999999875 5 999999999974
No 139
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.25 E-value=0.00053 Score=57.36 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=50.0
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~ 265 (464)
+.+++++|.+ ++.++++++++. ++++.|.+++...+||++++ ++++|+|+..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4578999975 578899999998 99999999999999999865 899999999999854
No 140
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.25 E-value=0.0009 Score=46.32 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++++++++++.++++.|.+++.+.+||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 31 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDE 31 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECC
Confidence 3567899999999999999999999999987
No 141
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.24 E-value=0.00052 Score=57.25 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=49.6
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
..++.++|.+ ++.++++++++. ++++.|.+.+.+.+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4789999986 567899999998 99999999999999999861378999999999874
No 142
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.24 E-value=0.00064 Score=56.42 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=46.8
Q ss_pred ccccccccccCcceEEEcC-CCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~-d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+ +...+.. ++++. ++++.|.+++++++||++++ ++++|+|+.+|++.
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 4578899965 3344556 99998 99999999999999999865 79999999999874
No 143
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.24 E-value=0.00048 Score=58.21 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=47.4
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+..++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 345889997644444444599998 99999999999999999865 78999999999864
No 144
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.23 E-value=0.00069 Score=57.14 Aligned_cols=56 Identities=23% Similarity=0.490 Sum_probs=48.1
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC-CCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d-~d~iVGIVt~kDLl~ 264 (464)
.+++++|.+ ++.++++++++. ++++.|.+++..++||++++ .++++|+|+.+|++.
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788874 677899999998 99999999999999999764 268999999999875
No 145
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00055 Score=58.14 Aligned_cols=57 Identities=16% Similarity=0.402 Sum_probs=49.9
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
...++.++|.+ ++.+++.++++. ++++.|.+++.+.+||++++ |+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 45678899964 578899999998 99999999999999999865 89999999999875
No 146
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.22 E-value=0.0012 Score=71.72 Aligned_cols=105 Identities=11% Similarity=0.167 Sum_probs=74.6
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccc--ccc----cccc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPL----RKMI 277 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~--~~V----~dIM 277 (464)
.+.+|+++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++...... .+. ..++
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~ 238 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL 238 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence 4678999999866688999999998 99999999999999999865 79999999999987643210 111 1111
Q ss_pred ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 012416 278 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 312 (464)
Q Consensus 278 ~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDeyG 312 (464)
. -..|.....-.+-.+.+.+.+.+++.|--.+|
T Consensus 239 v--gaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g 271 (505)
T PLN02274 239 V--GAAIGTRESDKERLEHLVKAGVDVVVLDSSQG 271 (505)
T ss_pred E--EEEEcCCccHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1 11244444445667777778888765533434
No 147
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.22 E-value=0.00074 Score=68.57 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=51.4
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~ 265 (464)
.+.+|+++|++ ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 34679999986 677899999998 99999999999999999875 799999999999864
No 148
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.22 E-value=0.00055 Score=59.78 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=50.5
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
....+++++|.+ ++.++++++++. ++++.|.+.+.+++||++ + |+++|+++.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 356789999975 678899999998 999999999999999998 4 89999999999875
No 149
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00051 Score=58.29 Aligned_cols=57 Identities=16% Similarity=0.391 Sum_probs=50.2
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.+.++.++|.+ ++.++++++++. ++++.+.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 356678899975 678899999998 9999999999999999985 79999999999875
No 150
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00067 Score=57.60 Aligned_cols=57 Identities=14% Similarity=0.330 Sum_probs=50.0
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
...++.++|.. ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 56678899964 677899999998 99999999999999999875 78999999999874
No 151
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.20 E-value=0.00068 Score=58.92 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=49.1
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
...++.++|.+ ++..+++++++. ++++.|.+.+.+++||+++ ++++|+++.+|+++
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34479999975 678899999998 9999999999999999985 89999999999875
No 152
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.18 E-value=0.0008 Score=55.93 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=49.5
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.++.++|.+ ++.++++++++. ++++.|.+.+...+||++++ |+++|+++.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 35678899975 678899999998 99999999999999999875 78999999999874
No 153
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.18 E-value=0.00089 Score=55.70 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=47.1
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.++.++|.+ +..+++++.++. ++++.|.+++.+++||++ + |+++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 357888875 467899999998 999999999999999997 3 89999999999874
No 154
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.17 E-value=0.0008 Score=56.24 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=49.2
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|.+ ++..+++++++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 35678899975 678899999998 9999999999999999974 78999999999875
No 155
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.17 E-value=0.00082 Score=56.10 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=49.3
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|.+ ++.++++++++. ++++.|.+++.+.+||++ + ++++|+|+.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678899975 677899999998 999999999999999998 4 79999999999874
No 156
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.16 E-value=0.00081 Score=55.70 Aligned_cols=55 Identities=31% Similarity=0.536 Sum_probs=48.3
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.++.++|.+ .+.++++++++. ++.+.+.+++.+++||++++ |+++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 468888975 567899999998 99999999999999999865 79999999999874
No 157
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.16 E-value=0.00092 Score=55.54 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=48.2
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.++.++|.+ ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 467788875 678899999998 99999999999999999865 79999999999874
No 158
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.16 E-value=0.00073 Score=57.19 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=50.4
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
....++.++|.+ .+.+++.++++. ++++.+.+++++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456779999975 678899999998 9999999999999999975 79999999999875
No 159
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.0009 Score=57.08 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=44.9
Q ss_pred ccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 209 ~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+++|.. ++.++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|++.
T Consensus 68 ~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDFE--GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ 119 (120)
T ss_pred cccCCC--CCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence 445542 567899999998 99999999999999999875 88999999999875
No 160
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00059 Score=57.30 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=46.7
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|.+ .+.++++++++. ++++.|.+++ .+||++++ ++++|+++.+|+++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence 46679999986 577889999998 9999998755 59999865 89999999999875
No 161
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.14 E-value=0.00088 Score=55.20 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=48.5
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+ +..++++++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 4568899975 677899999998 9999999999999999985 89999999999873
No 162
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.00071 Score=56.63 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=48.7
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+ ++.++++++++. ++++.|.+++.+++||+++ |+++|+++.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899975 567899999998 9999999999999999985 79999999999875
No 163
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.00076 Score=56.29 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=48.5
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.++.++|.. ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 468899964 678899999998 99999999999999999865 79999999999864
No 164
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.11 E-value=0.00099 Score=55.67 Aligned_cols=55 Identities=22% Similarity=0.455 Sum_probs=48.4
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+ ++.++.+++++. ++++.|.+++..++||+++ ++++|+|+..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4578888964 677899999998 9999999999999999985 78999999999874
No 165
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.08 E-value=0.0012 Score=55.20 Aligned_cols=56 Identities=18% Similarity=0.437 Sum_probs=48.6
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.++.++|.+ ++.++++++++. ++++.+.+++...+||+++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 45578899975 577889999998 9999999999999999985 38999999999874
No 166
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.05 E-value=0.0011 Score=45.89 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=40.4
Q ss_pred eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (464)
Q Consensus 218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~ 265 (464)
+.++++++++. ++.+.|.+++++.+||++++ ++++|+++.+++...
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence 45678999998 99999999999999999875 789999999998653
No 167
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.02 E-value=0.0013 Score=54.91 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=48.6
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.. ++.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3578889964 678899999998 9999999999999999985 79999999999874
No 168
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.01 E-value=0.0013 Score=54.45 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=41.3
Q ss_pred eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 67889999998 99999999999999999865 79999999999875
No 169
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.98 E-value=0.0022 Score=53.42 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=47.1
Q ss_pred ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.++|.+ ++.++++++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 47788864 567889999998 99999999999999999865 89999999999864
No 170
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0011 Score=56.27 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=48.4
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+++++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 458888864 678899999998 99999999999999999865 79999999999875
No 171
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.95 E-value=0.0014 Score=56.42 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=49.4
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEec-CCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~-d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|++ ++++++++.++. ++++.|.+.+...+||+++ +.++++|+|+.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678999975 678899999998 9999999999999999853 3478999999999874
No 172
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.94 E-value=0.0017 Score=54.00 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=48.1
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.++.++|.+ ++.+++++.++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 568888864 677899999998 99999999999999999865 79999999999874
No 173
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.91 E-value=0.0031 Score=56.06 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=28.6
Q ss_pred CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 280 ~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.+.++++++++.++++.|.+++.+.+||+|+
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~ 32 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS 32 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 4678999999999999999999999999997
No 174
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.91 E-value=0.0016 Score=54.26 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=46.0
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
..+.++|. ++.++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 34666664 357889999998 99999999999999999875 78999999999874
No 175
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.89 E-value=0.0045 Score=53.73 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=29.8
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 279 r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+++.+++++.++.++++.|++++...+||+|+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~ 33 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE 33 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 56788999999999999999999999999987
No 176
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.89 E-value=0.0033 Score=66.09 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=61.9
Q ss_pred ccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc-cccccccccccCC
Q 012416 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRI 281 (464)
Q Consensus 203 l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~-~~~~V~dIM~r~~ 281 (464)
..-.+++++|.|.... ...+.+ . +++ +++.+++.|++. |+++..+....... ....+.+ +....
T Consensus 271 ~~~l~a~~~m~~~~~~--~~~~~~-~--~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 335 (382)
T TIGR03415 271 LNVLTARSLMRPLTDL--EHVDGG-W--CVS---DRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES-LEAAP 335 (382)
T ss_pred ccceeHHHHhcccccc--cccCcc-h--hhh---hcccceeEeecc------ceecccchHhHhhcccccchhh-hcccC
Confidence 4557889999763332 223333 2 232 378888888863 88887776543221 2235666 47778
Q ss_pred cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 282 ~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
++|++++++.+++..+.+.+.+ ++|+|+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 363 (382)
T TIGR03415 336 TVINPDTLMRDVLAARHRTGGA-ILLVEN 363 (382)
T ss_pred cccCCCCcHHHHHHHHhcCCCC-eEEeeC
Confidence 8999999999999999988866 456676
No 177
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.0021 Score=53.65 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=48.5
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.+++++|.+ ++.++++++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 3468888874 577899999998 99999999999999999875 88999999999874
No 178
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=96.88 E-value=0.0012 Score=60.68 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=36.4
Q ss_pred ccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 272 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 272 ~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
....+|.+|++++.+++++.+++..|+++++..+||+++
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~ 104 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE 104 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC
Confidence 456789999999999999999999999999999999987
No 179
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.87 E-value=0.0021 Score=55.38 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=44.4
Q ss_pred cccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 210 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 210 dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.|. .++.++++++++. ++++.|.+++.+++||++++ ++++|+|+..|+++
T Consensus 75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 4554 3678899999998 99999999999999999875 89999999999875
No 180
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.78 E-value=0.0029 Score=53.18 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=43.5
Q ss_pred ccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 211 AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 211 IMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 7864 677899999998 9999999999999999953 79999999999875
No 181
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.73 E-value=0.0035 Score=66.75 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=37.6
Q ss_pred ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
..+++++|.+++.++++++++.++++.|.+++...+||+|+
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~ 374 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE 374 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 35788998889999999999999999999999999999997
No 182
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.67 E-value=0.0028 Score=69.80 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=51.4
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCC-CcEEEEEEcchhcccc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP-TNIIGLILVKNLLSVD 266 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~-d~iVGIVt~kDLl~~~ 266 (464)
+.+++|+|++ ++.++++++++. ++++.|.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999975 667899999998 999999999999999998653 4799999999998754
No 183
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.65 E-value=0.003 Score=53.35 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=47.0
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCc---EeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHS---RVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~S---r~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
.+.+++++|.+ ++.++++++++. ++++.|.+++.. ..||++++ ++++|+|+.+|++.
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999975 678899999998 999999988753 44677765 89999999999874
No 184
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.59 E-value=0.0039 Score=55.36 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=49.4
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
...++.++|.+ ++.+++.++++. ++++.|.+.+++++||+++ ++++|+++.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678999975 678899999998 9999999999999999985 79999999999874
No 185
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.49 E-value=0.0056 Score=60.32 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=36.4
Q ss_pred cccccccccC-CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 271 VPLRKMIIRR-IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 271 ~~V~dIM~r~-~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.+++++|.++ ++.+++++++.++++.|.+.+.+.++|+|+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~ 195 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE 195 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC
Confidence 4678898888 889999999999999999999999999997
No 186
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.45 E-value=0.0059 Score=61.86 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=66.2
Q ss_pred ccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---cc------cccccc
Q 012416 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AV------PLRKMI 277 (464)
Q Consensus 207 tV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~~------~V~dIM 277 (464)
+++++|.| ++++++++++. ++++.|++++....||+|+. |.++|+|+.+|++.....+ .. .+..+
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~- 207 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL- 207 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence 47788874 44799999998 99999999999999999875 7899999999998764321 11 12221
Q ss_pred ccCCcEecCCCCHHHHHHHHH
Q 012416 278 IRRIPRVSEDMPLYDILNEFQ 298 (464)
Q Consensus 278 ~r~~~~V~e~~~l~eaL~~m~ 298 (464)
....+.|+..+++.++.+.+.
T Consensus 208 ~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 208 SRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred CCCeEEEEeccCHHHHHHHhC
Confidence 223467999999999998873
No 187
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.40 E-value=0.0099 Score=48.39 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=46.5
Q ss_pred cccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 208 V~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++|.+ +..+++.++++. ++.+.+.+.+.+.+||++++ ++++|+++.+|+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677864 677889999998 99999999999999999876 89999999999874
No 188
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.40 E-value=0.0067 Score=50.23 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=46.2
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
..+.++|.+ ++.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 356777864 567789999998 9999999999999999984 68999999999874
No 189
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.38 E-value=0.0051 Score=65.95 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=53.5
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~ 266 (464)
.+.+++++|++ .+++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|++...
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence 35689999984 4788999999998 99999999999999999876 8999999999999764
No 190
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.35 E-value=0.0053 Score=66.35 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=59.9
Q ss_pred hHHHHHHHhhcc---cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416 192 DETTIIAGALEL---TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (464)
Q Consensus 192 ~E~~~I~~vl~l---~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~ 266 (464)
.++++..+++.= ...+|+++||. ++++++.++-+- ||+-.|.+++..++||+++ |+++|+|+..|++...
T Consensus 197 T~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 197 TRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLF 269 (610)
T ss_pred ehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhh
Confidence 356677777762 35789999995 899999999998 9999999999999999975 8999999999998754
No 191
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.33 E-value=0.0058 Score=50.47 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=43.6
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
+.++.++|.+ ++.++++++++. ++.+.|.+ . ...||++++ ++++|+++.+|++.
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence 3568888964 567899999998 89888887 3 347888765 89999999999875
No 192
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.27 E-value=0.0097 Score=60.73 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=74.0
Q ss_pred HHHHHHhhcccccccccccccCcceEEEcCC-CChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccccccc
Q 012416 194 TTIIAGALELTEKTAKDAMTPISKAFSLDLD-ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVP 272 (464)
Q Consensus 194 ~~~I~~vl~l~~itV~dIMtPR~dvvtV~~d-~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~~~~ 272 (464)
++.++++-...=.++++||.+ .+.-....+ ..-. .++..+.+.+.+.+.+++. .++.+|+|+..++...
T Consensus 262 ~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 262 RDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA------- 331 (386)
T ss_pred HHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc-------
Confidence 456666666677899999985 232222222 2223 5777888887777777764 3679999999887654
Q ss_pred cccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 273 V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
.+..++..++.++++.+.+....+...+.+ |+||
T Consensus 332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde 365 (386)
T COG4175 332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDE 365 (386)
T ss_pred ---cccccccccCccchHHHHHHHHhcCCCcee-EEcC
Confidence 246677889999999999999998887776 5566
No 193
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.25 E-value=0.014 Score=61.76 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=67.9
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc---c-ccccccc---
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---A-VPLRKMI--- 277 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~---~-~~V~dIM--- 277 (464)
..+++++|.| +.++++++++. ++++.|++++....+|+|+. |.++|+||.+|++...-.+ + .+-.+.+
T Consensus 254 ~~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~ 328 (408)
T TIGR03520 254 NFDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred CCCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence 3457888864 57899999999 99999999999999999875 8899999999998764211 1 0111111
Q ss_pred ccCCcEecCCCCHHHHHHHHHh
Q 012416 278 IRRIPRVSEDMPLYDILNEFQK 299 (464)
Q Consensus 278 ~r~~~~V~e~~~l~eaL~~m~~ 299 (464)
....+.++..+++.++-+.|.-
T Consensus 329 ~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 329 DDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CCCeEEEEeccCHHHHHHHhCC
Confidence 1234668889999999998853
No 194
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.014 Score=62.46 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=55.0
Q ss_pred cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 267 (464)
Q Consensus 202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~ 267 (464)
.-++..++++|.+ ++++++++++.+ ++.+.+.+++....||+|++ ++++|+++..|++....
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi~ 253 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVIE 253 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHHH
Confidence 4567889999986 478999999998 99999999999999999976 89999999999987543
No 195
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.96 E-value=0.027 Score=57.95 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=52.9
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~ 266 (464)
++.+...+|+. ..+++.+.+|+. .+.+.|...++.-+||++++ .+++|+|+.+|+++..
T Consensus 247 ~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l 305 (432)
T COG4109 247 PSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL 305 (432)
T ss_pred CCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence 56788999995 568899999999 89999999999999999976 8999999999999764
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=93.44 E-value=0.093 Score=54.85 Aligned_cols=57 Identities=19% Similarity=0.464 Sum_probs=49.4
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 267 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~ 267 (464)
..+.+.|.+ .+.++++++++. +++..+.++++. +||+|++ ++++|+|+..+++....
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY 358 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 468888864 567899999998 999999999999 9999876 89999999999987653
No 197
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.52 E-value=0.12 Score=54.23 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=52.8
Q ss_pred cccccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (464)
Q Consensus 202 ~l~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~ 265 (464)
.=....+.++|+++. ++.+.+.+++ ++-+.+.++.-.++||++++ |+++-+++..||.+.
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN 226 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence 335677999999965 7889999998 89999999999999999876 999999999999864
No 198
>PRK11573 hypothetical protein; Provisional
Probab=91.94 E-value=0.49 Score=50.32 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=61.3
Q ss_pred cccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----c----cccccccccC
Q 012416 210 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----A----VPLRKMIIRR 280 (464)
Q Consensus 210 dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~----~~V~dIM~r~ 280 (464)
++|. ++..++++.++. ++++.|++++..-.-|+|+. |...|+||..|++...-.+ + ..+... ...
T Consensus 259 ~~~r---~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~ 332 (413)
T PRK11573 259 RAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDG 332 (413)
T ss_pred hhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCC
Confidence 4554 467899999998 99999999988888888875 8899999999998753211 1 112221 223
Q ss_pred CcEecCCCCHHHHHHHHH
Q 012416 281 IPRVSEDMPLYDILNEFQ 298 (464)
Q Consensus 281 ~~~V~e~~~l~eaL~~m~ 298 (464)
.+.|+..+++.++-+.+.
T Consensus 333 ~~~v~G~~~l~d~~~~l~ 350 (413)
T PRK11573 333 SVIIDGTANVREINKAFN 350 (413)
T ss_pred EEEEEeeeEHHHHHHHhC
Confidence 466899999999988874
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.04 E-value=0.36 Score=51.14 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=49.0
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR 268 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~ 268 (464)
+.+++++|.+ +..++++++++. +++..+.++.+. +||+|++ |+++|+|+..+++.....
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALDR 394 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHHh
Confidence 3467788864 567899999998 999999987766 9999876 999999999999887643
No 200
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=88.38 E-value=1.3 Score=47.35 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=34.9
Q ss_pred cccccccccc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 270 AVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 270 ~~~V~dIM~r--~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
+.+++++|+. ++..++.+.++.++.+.+.+++....||.|+
T Consensus 205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~ 247 (429)
T COG1253 205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG 247 (429)
T ss_pred CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC
Confidence 3467888753 4677999999999999999999999999985
No 201
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=86.10 E-value=2.3 Score=48.11 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=49.2
Q ss_pred cccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecC-CCcEEEEEEcchhcccc
Q 012416 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVD 266 (464)
Q Consensus 204 ~~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d-~d~iVGIVt~kDLl~~~ 266 (464)
..+.|+++|.. ++.++..+.|.. |+.+.+..+....+|++++. ..-++|.|..+.|....
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 46789999984 899999999998 88887777669999999753 24478999999987653
No 202
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.08 E-value=2.1 Score=42.95 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=55.2
Q ss_pred eEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----------------ccccccccccC
Q 012416 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----------------AVPLRKMIIRR 280 (464)
Q Consensus 218 vvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----------------~~~V~dIM~r~ 280 (464)
++.|..| ++ ||+++- +++.|.++ |+++=+=+..+++..+.++ ...+.+.|...
T Consensus 189 ivfVTHD--id-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFVTHD--ID-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEecC--HH-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 4455444 45 676543 58888874 8999999988888765432 12233443332
Q ss_pred C----cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 281 I----PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 281 ~----~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
. -.++......+++..+...+...+||+|+
T Consensus 259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~ 292 (309)
T COG1125 259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE 292 (309)
T ss_pred ccccCCccccchhhHHHHHHHHhcCCceeEEECC
Confidence 2 12555666677899999999999999998
No 203
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=75.12 E-value=11 Score=39.66 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=60.2
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccccc-----ccccccccc--
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMII-- 278 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~~-----~~~V~dIM~-- 278 (464)
.+-.++|.--.++..++.++++. +-+..+++++-.---|+|+- |.+.|+|+..|++...-.+ +....++..
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~ 342 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQS 342 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHHHhccccccCcccchhhcccC
Confidence 45556665556788999999998 77888887765555677764 8999999999998653221 122223311
Q ss_pred cCCcEecCCCCHHHHHHHHH
Q 012416 279 RRIPRVSEDMPLYDILNEFQ 298 (464)
Q Consensus 279 r~~~~V~e~~~l~eaL~~m~ 298 (464)
...+.+..+.++.++=+.|.
T Consensus 343 dgs~iidGs~~iRdlNr~l~ 362 (423)
T COG4536 343 DGSFIIDGSANVRDLNRALD 362 (423)
T ss_pred CCcEEEeCCCcHHHHHHhcC
Confidence 11234777777777766654
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=65.41 E-value=7.2 Score=41.17 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=42.3
Q ss_pred ccccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccc
Q 012416 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (464)
Q Consensus 205 ~itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~ 266 (464)
+.++.+ +. +++.++++++++. +++..+.++++. +||+++ |+++|+|+..+++.+.
T Consensus 325 ~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 325 EQEVES-LE--AAPTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred ccchhh-hc--ccCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 344555 32 3677889999998 999988877654 788774 8999999999998654
No 205
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=62.29 E-value=9.3 Score=42.63 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=45.7
Q ss_pred cccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (464)
Q Consensus 208 V~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~ 265 (464)
....|.| ...++++++++. .+...++.-|..++-|+... .+++|+++.+|+...
T Consensus 692 l~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 692 LHPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY 745 (762)
T ss_pred cccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence 3456765 457899999998 99999999999999999865 778999999999854
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=60.68 E-value=10 Score=38.30 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=42.0
Q ss_pred cccccccccccCcce--EEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcc
Q 012416 204 TEKTAKDAMTPISKA--FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (464)
Q Consensus 204 ~~itV~dIMtPR~dv--vtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~ 264 (464)
...++.+.|.+.... -.+....... +++..+...+.+.+||+|++ |+++|.++..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 456677887653311 1123333444 67777888999999999987 99999999999874
No 207
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=56.42 E-value=36 Score=33.89 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=64.5
Q ss_pred cccccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhcccccc---------cccccccc
Q 012416 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKM 276 (464)
Q Consensus 206 itV~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~~---------~~~~V~dI 276 (464)
-.++++..| .+.++.+-.+. -.++.++.+++.---|+|+- |-+-|.|+..|++...-. +...++.+
T Consensus 133 F~i~~lLRP---av~VPESKrvd-~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l 207 (293)
T COG4535 133 FDIKELLRP---AVVVPESKRVD-RLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL 207 (293)
T ss_pred ccHHHhccc---ceecccchhHH-HHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh
Confidence 346666664 56789999998 88999998888878888864 889999999999875321 12335554
Q ss_pred cccCCcEecCCCCHHHHHHHHHh
Q 012416 277 IIRRIPRVSEDMPLYDILNEFQK 299 (464)
Q Consensus 277 M~r~~~~V~e~~~l~eaL~~m~~ 299 (464)
.+.-+.|..-+++++-=+.|..
T Consensus 208 -s~~~~~VrALT~IedFNe~F~t 229 (293)
T COG4535 208 -SRHTWRVRALTEIEDFNEAFGT 229 (293)
T ss_pred -cCCceEEEecccHHHHHHHhcC
Confidence 5566778888888877766643
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=53.21 E-value=18 Score=41.34 Aligned_cols=41 Identities=7% Similarity=0.207 Sum_probs=37.5
Q ss_pred ccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 012416 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (464)
Q Consensus 270 ~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~VVDe 310 (464)
...++++|.+++.++..+++..|+-+.++....+..|+||.
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s 627 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES 627 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC
Confidence 35688999999999999999999999999888999999987
No 209
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=40.48 E-value=2.8e+02 Score=25.09 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=3.6
Q ss_pred hhhcchHHH
Q 012416 114 GEILPQAVC 122 (464)
Q Consensus 114 GEiiPK~lA 122 (464)
|--.|..++
T Consensus 111 ~~~~~~~~~ 119 (183)
T PF01595_consen 111 ARRHPEKIA 119 (183)
T ss_pred HHHhHHHHH
Confidence 333444443
No 210
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=39.69 E-value=28 Score=36.24 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=38.1
Q ss_pred ceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccccc
Q 012416 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 267 (464)
Q Consensus 217 dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~~~ 267 (464)
++.+++.++++. +.+..+.+.+ ..+||+|++ ++++|++....++.+..
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvde~-~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVDED-GRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEcCC-CcEEEEecHHHHHHHHh
Confidence 567889999998 7777666544 568899876 99999999999887643
No 211
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=37.65 E-value=44 Score=37.49 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=43.1
Q ss_pred cccccccCcceEEEcCCCChHHHHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (464)
Q Consensus 208 V~dIMtPR~dvvtV~~d~tl~eeal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~ 265 (464)
.+++|.+ .+.++....+.+ -+++++++-|.+..-|.++ |++.|+|+.||+++.
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRH 693 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHh
Confidence 4667654 446788888887 8999999999999988753 899999999999865
No 212
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=36.94 E-value=47 Score=36.66 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCcEeeEEecCCCcEEEEEEcchhccc
Q 012416 230 DTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (464)
Q Consensus 230 eal~~m~~~~~Sr~PVvd~d~d~iVGIVt~kDLl~~ 265 (464)
.+.+.+.+.|-+.++|+++ +++.|+|+.||+.+-
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK~ 450 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcch
Confidence 4556677788899999975 799999999999864
No 213
>PF10909 DUF2682: Protein of unknown function (DUF2682); InterPro: IPR024322 The function of these viral proteins is not known.
Probab=26.30 E-value=39 Score=27.59 Aligned_cols=47 Identities=36% Similarity=0.583 Sum_probs=26.8
Q ss_pred EEEeHHHHHHHHHhc--cc-cc-cchhhHhhhhhcccccEEEEEehhhHHhHHHHHHHHHhhhc
Q 012416 401 GVITMEDVIEELLQE--EI-LD-ETDEYVNIHNRLSFMFSFVFYFFIFLCMWNLLIDLITLRHK 460 (464)
Q Consensus 401 g~vt~~d~~~~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (464)
|...+|+.+-.++-. .| .| |...|..+++.++ .| -|.+|||||++|-
T Consensus 26 ~~~~lE~~Ltkll~~~naI~Fd~~~~~l~~Lk~Ni~------------nC-iNi~IdLItIK~y 76 (77)
T PF10909_consen 26 QFDDLEERLTKLLIRANAIVFDPEQSNLKFLKNNIS------------NC-INILIDLITIKHY 76 (77)
T ss_pred chhhHHHHHHHHHHHhcceeeCcchhHHHHHHHHHH------------HH-HHHHHHHHHHhhc
Confidence 666677666555411 11 13 3333444444332 34 5999999999984
No 214
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.60 E-value=2.2e+02 Score=22.95 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcC
Q 012416 13 MFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSG 53 (464)
Q Consensus 13 ~~w~~lllilillllsafFsgsE~Al~Sv~r~rL~~l~~~g 53 (464)
++|+.+++++++ ++.|++-| ++-++|.-.+++.+..
T Consensus 2 ~l~lail~ivl~-ll~G~~~G----~fiark~~~k~lk~NP 37 (71)
T COG3763 2 SLWLAILLIVLA-LLAGLIGG----FFIARKQMKKQLKDNP 37 (71)
T ss_pred hhHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHhhCC
Confidence 467766444433 33455555 5556666666665544
No 215
>PF15284 PAGK: Phage-encoded virulence factor
Probab=22.03 E-value=1.1e+02 Score=23.91 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012416 18 VLGIIALVCFAGLMAGLTLGL 38 (464)
Q Consensus 18 lllilillllsafFsgsE~Al 38 (464)
+++.+++++.++.||++-+|-
T Consensus 7 ifL~l~~~LsA~~FSasamAa 27 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMAA 27 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 466677778888999997773
No 216
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.93 E-value=3.2e+02 Score=29.20 Aligned_cols=50 Identities=22% Similarity=0.108 Sum_probs=31.8
Q ss_pred cEEEEEEcchhcccccccccccccccccCCcEecCCCCHHHHHHHHHhCCCcEEEE
Q 012416 252 NIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 307 (464)
Q Consensus 252 ~iVGIVt~kDLl~~~~~~~~~V~dIM~r~~~~V~e~~~l~eaL~~m~~~~~~~a~V 307 (464)
++-|.++-+||+ ..... .+.+...-|--..-.|.+++++.+.+ +....+|
T Consensus 314 ~VagLlTg~Di~-~l~~~--~~~d~~liP~~~fldd~t~~~~~~~l---~~~v~v~ 363 (404)
T TIGR03278 314 DIACLITEDDLE-ELDLS--EVKETVIIPGRAFVHDMVAEEILKRD---GVDRIVV 363 (404)
T ss_pred cccccchHHHHH-HhcCC--CCCCEEEecCccccccccHHHHHHHh---CCcEEEe
Confidence 399999999999 55432 34443333334445667888888776 4555554
No 217
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=20.49 E-value=7.6e+02 Score=23.61 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=22.1
Q ss_pred HHHhhhcchHHHHHhHHH-HHHHHHHHHHHHHHHHhhhHHHHHH
Q 012416 111 LMFGEILPQAVCTRYGLT-VGATMAPIVRVLLCLFFPISYPISK 153 (464)
Q Consensus 111 lifGEiiPK~lA~~~pe~-ia~~~a~~l~~~~~ll~Plv~~l~~ 153 (464)
.++++. .|.. .+.|++ -+......+..+.+.+||++|.+..
T Consensus 141 ~l~~~~-~~~a-~~~~~~~~~~~~l~~~~~~~W~~YPi~w~l~~ 182 (222)
T PF01036_consen 141 LLFGPL-RRAA-SAVSPSVGLYNKLRNLTVVLWILYPIVWLLSE 182 (222)
T ss_dssp HHHTHH-HHHH-TTSTHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHH-HHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444 3333 344444 3333334455566888998887653
Done!